BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013135
         (449 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O93937|PYR1_EMENI Protein pyrABCN OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
           / CBS 112.46 / NRRL 194 / M139) GN=pyrABCN PE=3 SV=2
          Length = 2275

 Score = 36.6 bits (83), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 171 YNLKKCMKPKLEFFKSLGFAELQMAKFLSSQPYILER-SLENHIIPCIEILRRV 223
           YN      P L   K LGF++ Q+AKFLSS    + R  +E  IIP ++ +  V
Sbjct: 940 YNASTVTAPLLRQAKQLGFSDRQLAKFLSSNELAIRRLRVEAGIIPIVKQIDTV 993


>sp|Q03316|RHIR_RHILV Regulatory protein RhiR OS=Rhizobium leguminosarum bv. viciae
           GN=rhiR PE=4 SV=1
          Length = 247

 Score = 33.5 bits (75), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 50  LQKSCGFSLESAVS-ASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTKRPSG-DLGD 107
           L  + GF  +S VS  +EK+ + T D+    L     H L R+QI N  +++     +  
Sbjct: 130 LHTAAGF--QSIVSFGAEKVELSTCDRSALYLMAAYAHSLLRAQIGNDASRKIQALPMIT 187

Query: 108 TLEPNLKLFKSLGITGANLAEMLNKEHRVLES 139
           T E  +  + + G T   +A +L + HR +++
Sbjct: 188 TREREIIHWCAAGKTAIEIATILGRSHRTIQN 219


>sp|A5G9D7|ATPG_GEOUR ATP synthase gamma chain OS=Geobacter uraniireducens (strain Rf4)
           GN=atpG PE=3 SV=1
          Length = 287

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 99/235 (42%), Gaps = 35/235 (14%)

Query: 70  VDTTDKIDSVLKLLRTHGLTRSQINNFVTKRP-SGDLGDTLEPNLKLFKSLGITGANLAE 128
           V  T +I   +K++    L R+Q  N V  RP +  LG+ LE   +L KS  + G+ L E
Sbjct: 14  VKNTRQITKAMKMVSAAKLRRAQ-ENVVAARPYAKKLGEVLE---RLSKSQDVDGSPLME 69

Query: 129 MLNKEHRVL---ESD-----------AYATVEFFRTNGFSDSQIKSITVKRPKF-YVYNL 173
                  +L    SD             A   F +  G   +++  +T+ R  + ++ N 
Sbjct: 70  KRQGGKALLIIVSSDRGLCGGFNANICKAAERFAKERGSEFTELSMMTIGRKGYEFLKNR 129

Query: 174 KKCMKPKLEFFKSLGFAELQMAKFLSSQ---PYILERSLENHIIPCIEILRRVLDTD--- 227
            K  K     F +L +   Q A  ++ +    Y+ E   E +++      + V+  D   
Sbjct: 130 HKIYKNYANIFGTLNY---QTAALIARELIDGYLAEEYDEVYLL--FNAFKSVMTQDITL 184

Query: 228 ENVLKAIRAGCLVLEYDIEKVLEPNIAILVNHGVPKSLVVKLMLIQPRTLLQSTA 282
           E +L          EY  E + EP+ A L++  +PK + V++     + +L+S A
Sbjct: 185 EQLLPVTPEVAAEEEYAPEYIYEPSKAALLDELLPKHIEVQMF----KAMLESVA 235


>sp|Q914M5|Y005_SIFVH Uncharacterized protein 5 OS=Sulfolobus islandicus filamentous
           virus (isolate Iceland/Hveragerdi) GN=SIFV0005 PE=4 SV=1
          Length = 97

 Score = 32.7 bits (73), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 417 KQFIERIVKKYEHKVPKVVKAHQGKIKFQG 446
           ++ ++ I++KY+ KVP +VK  +GKIK  G
Sbjct: 56  REIVKEIIEKYKEKVPNIVKFKEGKIKSDG 85


>sp|Q6Q305|L_EMARV RNA-directed RNA polymerase L OS=European mountain ash
            ringspot-associated virus (isolate Sorbus aucuparia)
            GN=RdRp PE=2 SV=2
          Length = 2293

 Score = 32.3 bits (72), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 381  SLEKRILPRCSVLQLLMSNKVITEDFSLTYMFKMTEKQFIERIVKKYEHKVPKVVKAHQG 440
            S  K +L RC  +++    + I +DF     FK T K     +++ ++H        +  
Sbjct: 1713 SFCKHVLQRCGDIKIYRDPEDIDDDFRKYIEFKYTLKDATMGLIQPHQHLAEYAFDVYNN 1772

Query: 441  KIKFQGFL 448
            K+ FQG +
Sbjct: 1773 KLIFQGLM 1780


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,223,274
Number of Sequences: 539616
Number of extensions: 5695490
Number of successful extensions: 15999
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 15981
Number of HSP's gapped (non-prelim): 34
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)