Query 013135
Match_columns 449
No_of_seqs 256 out of 1258
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 04:52:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013135.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013135hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 76.1 0.63 4.6E-05 28.8 1.9 25 318-342 4-28 (41)
2 d1uxda_ a.35.1.5 (A:) Fructose 73.3 1.8 0.00013 28.9 3.9 46 255-300 6-51 (59)
3 d2hsga1 a.35.1.5 (A:2-58) Gluc 72.3 3.6 0.00027 27.1 5.3 44 254-300 6-49 (57)
4 d1efaa1 a.35.1.5 (A:2-60) Lac 68.9 4.7 0.00034 26.8 5.2 44 254-300 7-50 (59)
5 d1efaa1 a.35.1.5 (A:2-60) Lac 67.4 3.6 0.00026 27.3 4.4 53 46-98 4-56 (59)
6 d1qpza1 a.35.1.5 (A:2-58) Puri 67.1 4.4 0.00032 26.7 4.7 43 255-300 6-48 (57)
7 d1oqya1 a.5.2.1 (A:160-200) DN 64.5 3.1 0.00023 25.5 3.3 25 75-99 3-27 (41)
8 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 63.2 5.7 0.00041 25.5 4.6 41 41-85 10-50 (51)
9 d1qpza1 a.35.1.5 (A:2-58) Puri 62.9 3.7 0.00027 27.0 3.7 51 48-98 4-54 (57)
10 d2hsga1 a.35.1.5 (A:2-58) Gluc 62.5 4.4 0.00032 26.7 4.0 52 46-97 3-54 (57)
11 d2g3qa1 a.5.2.1 (A:1339-1381) 60.3 2.2 0.00016 26.2 1.9 21 322-342 8-28 (43)
12 d1wiva_ a.5.2.1 (A:) Ubiquitin 55.4 7.6 0.00056 26.8 4.5 37 320-363 31-67 (73)
13 d1zcza1 c.24.1.3 (A:1-157) IMP 52.2 5 0.00036 32.3 3.4 39 141-181 31-69 (157)
14 d2crna1 a.5.2.1 (A:8-58) Suppr 50.9 7.4 0.00054 24.8 3.5 41 43-87 2-42 (51)
15 d1g8ma1 c.24.1.3 (A:4-200) IMP 49.7 7.6 0.00055 32.3 4.3 39 141-181 32-70 (197)
16 d1vg5a_ a.5.2.1 (A:) Rhomboid 49.0 7 0.00051 27.0 3.4 37 320-363 31-67 (73)
17 d1wgna_ a.5.2.1 (A:) Ubiquitin 42.7 6 0.00044 26.5 2.1 38 319-363 20-57 (63)
18 d1wiva_ a.5.2.1 (A:) Ubiquitin 39.6 15 0.0011 25.2 3.9 41 41-86 27-67 (73)
19 d1rxwa1 a.60.7.1 (A:220-324) F 36.7 56 0.0041 23.5 7.3 40 55-99 23-62 (105)
20 d1wjia_ a.5.2.1 (A:) Tudor dom 36.3 16 0.0011 24.2 3.5 41 41-86 7-47 (63)
21 d1vg5a_ a.5.2.1 (A:) Rhomboid 35.6 20 0.0014 24.5 4.0 23 77-99 30-52 (73)
22 d2pfxa1 a.152.1.3 (A:1-190) Un 35.1 42 0.0031 26.9 7.0 18 253-270 144-161 (190)
23 d1wjia_ a.5.2.1 (A:) Tudor dom 34.4 15 0.0011 24.3 3.2 39 319-364 10-48 (63)
24 d1rw1a_ c.47.1.12 (A:) Hypothe 33.8 16 0.0012 27.0 3.7 20 189-208 73-92 (114)
25 d1whca_ a.5.2.1 (A:) UBA/UBX 3 33.5 24 0.0017 23.4 4.1 44 40-87 6-49 (64)
26 d2r1jl1 a.35.1.2 (L:3-68) P22 32.5 19 0.0014 23.5 3.5 54 319-372 5-63 (66)
27 d1k6ya1 a.4.10.1 (A:1-46) N-te 31.7 11 0.00083 23.4 1.9 27 319-345 16-43 (46)
28 d1cuka1 a.5.1.1 (A:156-203) DN 27.5 19 0.0014 22.5 2.5 24 76-99 5-28 (48)
29 d1y9qa1 a.35.1.8 (A:4-82) Prob 27.4 17 0.0013 24.7 2.6 58 316-373 7-69 (79)
30 d2cwqa1 a.152.1.4 (A:1-117) Hy 27.2 43 0.0032 24.8 5.1 27 314-340 70-96 (117)
31 d2od5a1 a.4.5.70 (A:6-96) Hypo 26.9 38 0.0027 24.1 4.3 32 72-103 21-55 (91)
32 d1vkea_ a.152.1.2 (A:) Hypothe 26.7 1.1E+02 0.0081 22.3 7.7 28 313-340 55-82 (118)
33 d2b5aa1 a.35.1.3 (A:1-77) Regu 26.7 22 0.0016 23.9 3.1 56 318-373 11-71 (77)
34 d1veka_ a.5.2.1 (A:) Ubiquitin 25.3 33 0.0024 24.0 3.8 43 41-87 27-69 (84)
35 d1z96a1 a.5.2.1 (A:295-332) UB 25.1 46 0.0034 18.6 3.5 22 319-340 3-24 (38)
36 d2f3na1 a.60.1.2 (A:2-65) Sh3 23.9 75 0.0055 20.2 5.4 23 75-99 5-27 (64)
37 d1yira2 d.41.2.2 (A:4-144) Nic 22.7 78 0.0057 24.2 6.0 26 76-102 55-80 (141)
38 d2prra1 a.152.1.3 (A:5-194) Un 22.3 54 0.0039 26.1 5.3 41 321-370 140-180 (190)
39 d2croa_ a.35.1.2 (A:) cro 434 22.0 19 0.0014 23.5 1.8 21 319-339 5-26 (65)
40 d2af7a1 a.152.1.2 (A:1-119) Ga 20.6 83 0.0061 23.1 5.7 27 314-340 69-95 (119)
41 d1r69a_ a.35.1.2 (A:) 434 C1 r 20.5 27 0.002 22.4 2.4 21 320-340 4-25 (63)
42 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 20.4 31 0.0023 21.7 2.5 19 282-300 6-24 (50)
43 d1b0na2 a.35.1.3 (A:1-68) SinR 20.4 33 0.0024 22.4 2.9 16 359-374 49-64 (68)
44 d2q0ta1 a.152.1.1 (A:1-257) Hy 20.2 2.3E+02 0.016 23.5 16.2 150 177-343 79-232 (257)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.09 E-value=0.63 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhcC
Q 013135 318 WEKKLEAYMNFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 318 l~~k~~~l~~lG~s~~ev~~~v~~~ 342 (449)
.+++++-|.+|||+++++..+++.+
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4566777777888888887777654
No 2
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=73.31 E-value=1.8 Score=28.87 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013135 255 ILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 255 ~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
.-+.+|++...+.+.+...|.-...+++.-+...+..+++||.++.
T Consensus 6 iA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn~ 51 (59)
T d1uxda_ 6 IARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (59)
T ss_dssp HHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCCS
T ss_pred HHHHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcCH
Confidence 4456899999999999888775556777777777888899999875
No 3
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=72.31 E-value=3.6 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=34.5
Q ss_pred HHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013135 254 AILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 254 ~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
+.-+..|++...+.+.+...|. .+++.-+...+..+++||.++.
T Consensus 6 dvA~~agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn~ 49 (57)
T d2hsga1 6 DVAREASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPNA 49 (57)
T ss_dssp HHHHHTTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSCH
T ss_pred HHHHHHCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCCH
Confidence 3456689999999999988775 3666667777778899999884
No 4
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=68.93 E-value=4.7 Score=26.75 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=34.8
Q ss_pred HHHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013135 254 AILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 254 ~~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
+.-+..|++...+.+.+...+. .+++.-+...+..+++||.++.
T Consensus 7 diA~~agvS~sTVSr~l~~~~~---vs~~tr~rI~~~a~~lgY~pn~ 50 (59)
T d1efaa1 7 DVAEYAGVSYQTVSRVVNQASH---VSAKTREKVEAAMAELNYIPNR 50 (59)
T ss_dssp HHHHTTTSCHHHHHHHHTTCSS---CCTHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHCCCHHHHHHHHCCCCc---CCHHHHHHHHHHHHHHCCCcCH
Confidence 3456689999999999877765 3677777777788899999885
No 5
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=67.36 E-value=3.6 Score=27.33 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=37.2
Q ss_pred hHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHh
Q 013135 46 TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVT 98 (449)
Q Consensus 46 ~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~ 98 (449)
|+.-+-+.+|+|...+.++...-..-+++..+.+.+..+++|+.+..+++-+.
T Consensus 4 Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI~~~a~~lgY~pn~~Ar~L~ 56 (59)
T d1efaa1 4 TLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLA 56 (59)
T ss_dssp CHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHHHHHHHHHTCCCCHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCcCCHHHHHHHHHHHHHHCCCcCHHHHHHh
Confidence 45555567888888888887654444666777777788888887777766554
No 6
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=67.13 E-value=4.4 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=33.3
Q ss_pred HHHhCCCChHHHHHHHhhcCccceecchHHHHHHHHHHhcCCCCCh
Q 013135 255 ILVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 255 ~L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~~l~~lG~~~~~ 300 (449)
.-+..|++...+.+.+...|. .+++.-+...+..+++||.++.
T Consensus 6 vA~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~ 48 (57)
T d1qpza1 6 VAKRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSA 48 (57)
T ss_dssp HHHHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCH
Confidence 445689999999999987774 4666666677777899999885
No 7
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.48 E-value=3.1 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=17.6
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHHhh
Q 013135 75 KIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 75 ~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
+.+..++-|.++||++++..+.+.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~ 27 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRA 27 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566677777777777777776666
No 8
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.22 E-value=5.7 Score=25.47 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=30.7
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHh
Q 013135 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRT 85 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~ 85 (449)
..++..|..|+ +.||+.+.+.++.... ...+++.-++||-+
T Consensus 10 ~~~~~~l~~L~-~MGF~~~~a~~AL~~t---~n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 10 IKHGSALDVLL-SMGFPRARAQKALAST---GGRSVQTACDWLFS 50 (51)
T ss_dssp SSCCCHHHHHH-HHTCCHHHHHHHHHHT---TTSCHHHHHHHHHS
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHH---CCCCHHHHHHHHHc
Confidence 46667899997 7999999999886522 12468888888864
No 9
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=62.93 E-value=3.7 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHh
Q 013135 48 SDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVT 98 (449)
Q Consensus 48 ~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~ 98 (449)
.-.-+.+|+|...+.++...-..-+++.-+.|.+..+++|+.+..+++-++
T Consensus 4 ~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 4 KDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCccCHHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 334456777777777776544333455566666666777776666655444
No 10
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=62.47 E-value=4.4 Score=26.67 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=33.4
Q ss_pred hHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHH
Q 013135 46 TVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFV 97 (449)
Q Consensus 46 ~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il 97 (449)
|+.-+-+.+|+|...+.++.+.-..-+++.-+.+.+..+++|+.+...++-+
T Consensus 3 Ti~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 3 TIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHhCCCCcCCHHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 4445556778888887777665444455666667777777777766555543
No 11
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=60.28 E-value=2.2 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=14.2
Q ss_pred HHHHHHcCCCHHHHHHHHhcC
Q 013135 322 LEAYMNFGLTKDEVYSAFRRQ 342 (449)
Q Consensus 322 ~~~l~~lG~s~~ev~~~v~~~ 342 (449)
++-+.+|||++++..+++.++
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHc
Confidence 445567777777777777665
No 12
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.45 E-value=7.6 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013135 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
+.++-|.+|||+++++.++++.+- .++..-++||.+.
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 456677788888888888887662 2466677777764
No 13
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=52.18 E-value=5 Score=32.28 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=34.1
Q ss_pred hhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHH
Q 013135 141 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKL 181 (449)
Q Consensus 141 l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl 181 (449)
-.-+-.||++.|++-.+|.++ +.+|.+|.-.+ ++|-|++
T Consensus 31 TgGTak~L~~~Gi~v~~Vs~~-Tg~peil~gRv-KTLhp~i 69 (157)
T d1zcza1 31 SSGTAKFLKSNGIEANDVSTI-TGFENLLGGLV-KTLHPEI 69 (157)
T ss_dssp CHHHHHHHHHTTCCCEEGGGG-SCCCCGGGGTT-TTCCHHH
T ss_pred cChHHHHHHHhhhhhhHHHHH-hhHHHHHHhhh-ccchHHH
Confidence 456789999999999999984 48999999998 8899987
No 14
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.87 E-value=7.4 Score=24.84 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCC
Q 013135 43 QPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHG 87 (449)
Q Consensus 43 ~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G 87 (449)
+|..|.-|+ +.||+...+.++.... ...+++.-++||.++.
T Consensus 2 ~p~~v~~L~-~MGF~~~~a~~Al~~t---~n~~ve~A~~Wl~~h~ 42 (51)
T d2crna1 2 SPSLLEPLL-AMGFPVHTALKALAAT---GRKTAEEALAWLHDHC 42 (51)
T ss_dssp SCSSHHHHH-HTSCCHHHHHHHHHHH---TSCCHHHHHHHHHHHS
T ss_pred CHHHHHHHH-HcCCCHHHHHHHHHHH---CCCCHHHHHHHHHHcC
Confidence 566788887 7999999999886422 1246888888887653
No 15
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=49.68 E-value=7.6 Score=32.32 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=33.6
Q ss_pred hhhHHHHHHHCCCChhhHhhHhhhCCceeecCcccchhhHH
Q 013135 141 AYATVEFFRTNGFSDSQIKSITVKRPKFYVYNLKKCMKPKL 181 (449)
Q Consensus 141 l~~~l~fL~~lGl~~~~i~~il~~~P~lL~~~~e~~l~pkl 181 (449)
-.-+-.||++.|++-.+|.++ +.+|.++.-.+ ++|-|++
T Consensus 32 TgGTak~L~~~gi~v~~Vs~~-tg~peil~GRV-KTLhPkI 70 (197)
T d1g8ma1 32 SGGTATALRDAGLPVRDVSDL-TGFPEMLGGRV-KTLHPAV 70 (197)
T ss_dssp CHHHHHHHHHTTCCCEEHHHH-HSCCCBGGGTB-SSCSHHH
T ss_pred CcHHHHHHHHhcccHHHHHhh-hcCHHHHHHHH-hhcccee
Confidence 356788999999999999996 58999999998 7899988
No 16
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=48.98 E-value=7 Score=27.01 Aligned_cols=37 Identities=8% Similarity=0.314 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013135 320 KKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 320 ~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
+.++-|++|||+++++.++++.+- .++..-++||...
T Consensus 31 e~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Ll~~ 67 (73)
T d1vg5a_ 31 EQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC-------CCHHHHHHHHHhC
Confidence 344455566666666665554321 2355556666553
No 17
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.67 E-value=6 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHh
Q 013135 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNK 363 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~ 363 (449)
++.|+-|.+|||+++++.++++.+= .++..-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhC
Confidence 5678888899999999988877541 2466778888764
No 18
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=39.57 E-value=15 Score=25.19 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=30.2
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013135 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
..+...|.-|+ ++||+.+++.++.+.. ..+++.-++||-+.
T Consensus 27 ~~d~~~i~~L~-~MGF~~~~a~~AL~~~----~~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 27 DIDQSSVDTLL-SFGFAEDVARKALKAS----GGDIEKATDWVFNN 67 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHT----TSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHH-hcCCCHHHHHHHHHHc----CCCHHHHHHHHHcC
Confidence 35556778887 7999999999886533 35788888888654
No 19
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=36.65 E-value=56 Score=23.52 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCCHHHHHHhhcccccCCCcCHHHHHHHHHhCCCCHHHHHHHHhh
Q 013135 55 GFSLESAVSASEKLRVDTTDKIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 55 Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
|+-+..|.++.++. ++++.+++.+...........+++..
T Consensus 23 GIG~ktA~kli~~~-----gsle~i~~~~~~~~~~~~~~r~l~~~ 62 (105)
T d1rxwa1 23 GVGVKKALNYIKTY-----GDIFRALKALKVNIDHVEEIRNFFLN 62 (105)
T ss_dssp TCCHHHHHHHHHHH-----SSHHHHHHHHTC----CHHHHHHHHS
T ss_pred CcCHHHHHHHHHHh-----CCHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 55566666665443 34555555555444444455555443
No 20
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.31 E-value=16 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.1
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhC
Q 013135 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTH 86 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~ 86 (449)
..+...|.-|+ ++||+...+.++.+.- ..+++.-++||.+.
T Consensus 7 ~~d~~~v~~L~-~MGF~~~~a~~AL~~~----~~~~e~A~~wL~~~ 47 (63)
T d1wjia_ 7 GVDEKALKHIT-EMGFSKEASRQALMDN----GNNLEAALNVLLTS 47 (63)
T ss_dssp SSCHHHHHHHH-TTTCCHHHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHH-HcCCCHHHHHHHHHHh----CCCHHHHHHHHHHC
Confidence 35566778886 6899988888876532 34788888888654
No 21
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.63 E-value=20 Score=24.54 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=14.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhh
Q 013135 77 DSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 77 ~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
++.++-|.++||++++..+.+..
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~ 52 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34455566777777666666555
No 22
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=35.06 E-value=42 Score=26.94 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=10.8
Q ss_pred HHHHHhCCCChHHHHHHH
Q 013135 253 IAILVNHGVPKSLVVKLM 270 (449)
Q Consensus 253 v~~L~~lGv~~~~i~~li 270 (449)
++.|++.|++..+|..++
T Consensus 144 ~~~L~~~G~sd~eI~el~ 161 (190)
T d2pfxa1 144 REVLRSHGFNDRDIWDIA 161 (190)
T ss_dssp HHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHH
Confidence 455666666666665554
No 23
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.43 E-value=15 Score=24.29 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhc
Q 013135 319 EKKLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKL 364 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~m 364 (449)
++.++-|..|||+++.+.++++.+- ..+..-++||.+..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 3456677889999999998887662 25777888998864
No 24
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=33.77 E-value=16 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=9.0
Q ss_pred CChHHHHHHHHhCCcceecc
Q 013135 189 FAELQMAKFLSSQPYILERS 208 (449)
Q Consensus 189 ~s~~~i~~il~~~P~iL~~s 208 (449)
++.+++..++..+|.++.+.
T Consensus 73 ls~~e~i~~i~~~P~LikRP 92 (114)
T d1rw1a_ 73 LDEAKAIELMLAQPSMIKRP 92 (114)
T ss_dssp CCHHHHHHHHHHCGGGBCSC
T ss_pred ccHHHHHHHHHhCcceEeCC
Confidence 34444444444444444443
No 25
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.51 E-value=24 Score=23.40 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCC
Q 013135 40 TCTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHG 87 (449)
Q Consensus 40 ~~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G 87 (449)
...+...|.-|+ +.||+.+.+.++...- ....++.-++||.++.
T Consensus 6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t---~n~~~e~A~~Wl~~h~ 49 (64)
T d1whca_ 6 SGAELTALESLI-EMGFPRGRAEKALALT---GNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCCCCHHHHHH-TTTCCHHHHHHHHHHH---TSCCHHHHHHHHHHHT
T ss_pred CccCHHHHHHHH-HcCCCHHHHHHHHHHh---CCCCHHHHHHHHHHCC
Confidence 345667889997 7999999999886532 1236888888887643
No 26
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=32.46 E-value=19 Score=23.54 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=26.3
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHhcCCcccccChH-HHH---hHHHHHHHhcCCChHHHh
Q 013135 319 EKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQ-KIS---KLMDCYVNKLSMEPLIIS 372 (449)
Q Consensus 319 ~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e-~l~---~k~~fL~~~mg~~~~~i~ 372 (449)
..++.-++ +.|+|.++++..+.-.+..++.=+. +-. ..+.-+.+.+|++.++++
T Consensus 5 g~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~Ll 63 (66)
T d2r1jl1 5 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 63 (66)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 34455554 5666666666655444433332111 111 122334456777777765
No 27
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=31.73 E-value=11 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=22.2
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHhcCCcc
Q 013135 319 EKKLEAYM-NFGLTKDEVYSAFRRQPMF 345 (449)
Q Consensus 319 ~~k~~~l~-~lG~s~~ev~~~v~~~P~i 345 (449)
-.....|. .+|++..+.+.+|..+|.|
T Consensus 16 H~n~~~L~~~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 16 HSNWRAMASDFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCTTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33445676 7999999999999999987
No 28
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.49 E-value=19 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhh
Q 013135 76 IDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 76 ~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
.+..++.|..+|+++.+..+++.+
T Consensus 5 ~~eAi~AL~~LGY~~~ea~~av~~ 28 (48)
T d1cuka1 5 EQEAVARLVALGYKPQEASRMVSK 28 (48)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456677777888888887777766
No 29
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=27.39 E-value=17 Score=24.71 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChH-HHHh---HHHHHHHhcCCChHHHhh
Q 013135 316 ALWEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQ-KISK---LMDCYVNKLSMEPLIISK 373 (449)
Q Consensus 316 ~~l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e-~l~~---k~~fL~~~mg~~~~~i~~ 373 (449)
+.+-.++.-++ ..|+|.++++..+.-.+.-++-=+. +-.+ .+.-+.+.+|+++++++.
T Consensus 7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~ 69 (79)
T d1y9qa1 7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA 69 (79)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcchhHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhC
Confidence 45566676676 6888888888665443333322111 1111 223344455666666543
No 30
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=27.18 E-value=43 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 013135 314 SKALWEKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 314 s~~~l~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
...-++.......+.|.|++||..++.
T Consensus 70 c~~c~~~h~~~A~~~G~t~eEI~Eal~ 96 (117)
T d2cwqa1 70 SEACVKAMAHRAKRLGLSKEALLETLK 96 (117)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456677777777889999999987664
No 31
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=26.88 E-value=38 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=27.5
Q ss_pred CCcCHHHHHHHHH---hCCCCHHHHHHHHhhCCCC
Q 013135 72 TTDKIDSVLKLLR---THGLTRSQINNFVTKRPSG 103 (449)
Q Consensus 72 s~~~~~~v~~~L~---~~G~~~~~i~~il~~~P~l 103 (449)
.+.+-.++.++|. +.|-+..||+.|+.++|.+
T Consensus 21 ~p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf 55 (91)
T d2od5a1 21 RPRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDI 55 (91)
T ss_dssp SCEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTE
T ss_pred CCCcHHHHHHHHHHhcccCCCHHHHHHHHhcCcch
Confidence 3567788999996 4899999999999999988
No 32
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=26.74 E-value=1.1e+02 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 013135 313 MSKALWEKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 313 ~s~~~l~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
..+.-+...+...++.|.|++||..++.
T Consensus 55 ~c~~c~~~H~~~A~~~G~t~eEI~Eal~ 82 (118)
T d1vkea_ 55 RCDDCIRYHLVRCVQEGASDEEIFEALD 82 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467778888888899999999986664
No 33
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=26.71 E-value=22 Score=23.94 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHhcCCcccccChH-HHHh---HHHHHHHhcCCChHHHhh
Q 013135 318 WEKKLEAYM-NFGLTKDEVYSAFRRQPMFMIVSEQ-KISK---LMDCYVNKLSMEPLIISK 373 (449)
Q Consensus 318 l~~k~~~l~-~lG~s~~ev~~~v~~~P~iL~~S~e-~l~~---k~~fL~~~mg~~~~~i~~ 373 (449)
+-.++.-++ ..|+|.++++..+.-.++.++.=+. +-.+ .+.-+...+|+++++++.
T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~ 71 (77)
T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555555 5677777776655444433322111 1111 122244456666666543
No 34
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.30 E-value=33 Score=24.01 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHhcCCCHHHHHHhhcccccCCCcCHHHHHHHHHhCC
Q 013135 41 CTQPLTVSDLQKSCGFSLESAVSASEKLRVDTTDKIDSVLKLLRTHG 87 (449)
Q Consensus 41 ~~~~~~v~~L~~~~Gls~~~~~~~~~~~~~~s~~~~~~v~~~L~~~G 87 (449)
..++..|.-|+ ++||+...+.++.... ...+++.-++||-++.
T Consensus 27 ~~d~~~v~~L~-~MGF~~~~a~~AL~~t---~n~~~e~A~~Wl~~h~ 69 (84)
T d1veka_ 27 VANEEIVAQLV-SMGFSQLHCQKAAINT---SNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCCHHHHHHHH-HHTCCHHHHHHHHHHT---TTCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHH---cCCCHHHHHHHHHHcC
Confidence 35677889997 7999999999886422 1247889999997654
No 35
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=25.10 E-value=46 Score=18.62 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHh
Q 013135 319 EKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 319 ~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
..|+.-+.+|||+.-|..+.+.
T Consensus 3 nskiaqlvsmgfdpleaaqald 24 (38)
T d1z96a1 3 NSKIAQLVSMGFDPLEAAQALD 24 (38)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHh
Confidence 4566667777777777665543
No 36
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=23.91 E-value=75 Score=20.16 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=14.8
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHHhh
Q 013135 75 KIDSVLKLLRTHGLTRSQINNFVTK 99 (449)
Q Consensus 75 ~~~~v~~~L~~~G~~~~~i~~il~~ 99 (449)
+++.|.+||.++|+. +....+..
T Consensus 5 s~~~V~~wL~~~gl~--~y~~~F~~ 27 (64)
T d2f3na1 5 SKFDVGDWLESIHLG--EHRDRFED 27 (64)
T ss_dssp CHHHHHHHHHHTTCG--GGHHHHHH
T ss_pred CHHHHHHHHHHCCCH--HHHHHHHH
Confidence 356778888888875 34444444
No 37
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.67 E-value=78 Score=24.19 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC
Q 013135 76 IDSVLKLLRTHGLTRSQINNFVTKRPS 102 (449)
Q Consensus 76 ~~~v~~~L~~~G~~~~~i~~il~~~P~ 102 (449)
++..+++|+++.|+++++.-+ +.+|.
T Consensus 55 l~~~i~~l~~lrFt~eei~yL-~~~~~ 80 (141)
T d1yira2 55 IREQLEYLAGLAISDEQLAFL-ERIPF 80 (141)
T ss_dssp HHHHHHHHHHCCCCHHHHHHH-HTSTT
T ss_pred HHHHHHHHHhCCCCHHHHHHH-HcCCC
Confidence 567788888888888888654 44443
No 38
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=22.29 E-value=54 Score=26.05 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCHHHHHHHHhcCCcccccChHHHHhHHHHHHHhcCCChHH
Q 013135 321 KLEAYMNFGLTKDEVYSAFRRQPMFMIVSEQKISKLMDCYVNKLSMEPLI 370 (449)
Q Consensus 321 k~~~l~~lG~s~~ev~~~v~~~P~iL~~S~e~l~~k~~fL~~~mg~~~~~ 370 (449)
-++-|++.|||++||..++.-. -.-.-+..+.+.+|+++++
T Consensus 140 ~~~~L~~~g~s~~eivel~~~v---------a~~~~~nr~~~~l~i~~d~ 180 (190)
T d2prra1 140 DFEALREHGFTDEDAWDIAAIT---------AFFGLSNRMANTIGMRPND 180 (190)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH---------HHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCCh
Confidence 3456778899999999776511 1223445566778888764
No 39
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=22.05 E-value=19 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=10.4
Q ss_pred HHHHHHHH-HcCCCHHHHHHHH
Q 013135 319 EKKLEAYM-NFGLTKDEVYSAF 339 (449)
Q Consensus 319 ~~k~~~l~-~lG~s~~ev~~~v 339 (449)
..++..++ +.|++.+|++..+
T Consensus 5 ~~rlr~~R~~~gltq~~lA~~~ 26 (65)
T d2croa_ 5 SERLKKRRIALKMTQTELATKA 26 (65)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 34444444 4555555555444
No 40
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone decarboxylase, CMD {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.65 E-value=83 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 013135 314 SKALWEKKLEAYMNFGLTKDEVYSAFR 340 (449)
Q Consensus 314 s~~~l~~k~~~l~~lG~s~~ev~~~v~ 340 (449)
.+..++..+..-...|+|++||..++.
T Consensus 69 ~~~~l~~H~~~Al~~G~t~eEi~e~~~ 95 (119)
T d2af7a1 69 ADDQLKSHVRGALNAGCSKDEIIEVMI 95 (119)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 466788888888889999999987654
No 41
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=20.51 E-value=27 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHH-HcCCCHHHHHHHHh
Q 013135 320 KKLEAYM-NFGLTKDEVYSAFR 340 (449)
Q Consensus 320 ~k~~~l~-~lG~s~~ev~~~v~ 340 (449)
+++..++ ..|+|.+|++..+.
T Consensus 4 ~rik~~R~~~g~sq~elA~~~g 25 (63)
T d1r69a_ 4 SRVKSKRIQLGLNQAELAQKVG 25 (63)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCcHHHHHHHhC
Confidence 4444444 55666666555443
No 42
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.43 E-value=31 Score=21.68 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhcCCCCCh
Q 013135 282 ARLNKIIDEVKKLGFDPTN 300 (449)
Q Consensus 282 ~~l~~~v~~l~~lG~~~~~ 300 (449)
++...-++-|++|||...+
T Consensus 6 ~ry~~QL~qL~~MGF~d~~ 24 (50)
T d2dnaa1 6 VRFSKEMECLQAMGFVNYN 24 (50)
T ss_dssp HHTHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHcCCCCHH
Confidence 4566666777777776543
No 43
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=20.40 E-value=33 Score=22.39 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=10.7
Q ss_pred HHHHhcCCChHHHhhC
Q 013135 359 CYVNKLSMEPLIISKH 374 (449)
Q Consensus 359 fL~~~mg~~~~~i~~~ 374 (449)
-+.+.+|+++++++..
T Consensus 49 ~ia~~l~v~~~~l~~~ 64 (68)
T d1b0na2 49 KVSAVLDVSVHTLLDE 64 (68)
T ss_dssp HHHHHHTCCHHHHHCC
T ss_pred HHHHHHCCcHHHHcCC
Confidence 3556678888877653
No 44
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=20.16 E-value=2.3e+02 Score=23.50 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=81.3
Q ss_pred hhhHHHHHHHcCCChHHHHHHHHhCCcceecc-ccccchHHHHHHHHhcCChHHHHHHHHhCCcccccchhhhhHHHHHH
Q 013135 177 MKPKLEFFKSLGFAELQMAKFLSSQPYILERS-LENHIIPCIEILRRVLDTDENVLKAIRAGCLVLEYDIEKVLEPNIAI 255 (449)
Q Consensus 177 l~pkl~fL~~lG~s~~~i~~il~~~P~iL~~s-~~~~l~p~v~fL~~~g~~~~~v~~~l~~~P~iL~~s~e~~l~~~v~~ 255 (449)
+.--+..-...|+++++|..++.-.|. .+.. ..+.+.-..+.+.+.|.+.+. .| .....+. +.. .+
T Consensus 79 ~~~h~~~al~~G~t~~ei~E~l~~~~~-~G~~~~~~~~~~~~ev~~e~g~~~~~-------~~--~~~~~~~-~~~--~~ 145 (257)
T d2q0ta1 79 VARHIERALSFGATREELIEVLELVST-IGIHTSNVGVPVLLEVLEEEGLRKGA-------PP--LDERRQK-LKA--EF 145 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHGG-GGGHHHHHHHHHHHHHHHHTTSCCSC-------CC--CCHHHHH-HHH--HH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHcCCCCCC-------CC--CcchhhH-HHH--HH
Confidence 555566777789999999988866543 3432 222234444555555543210 01 1111111 222 22
Q ss_pred HHhCCCChHHHHHHHhhcCccceecchHHHHHHH-HHHhcCCCCChhHHHH-HHHHHHh-cCHHHHHHHHHHHHHcCCCH
Q 013135 256 LVNHGVPKSLVVKLMLIQPRTLLQSTARLNKIID-EVKKLGFDPTNLLFVL-AIRSMAV-MSKALWEKKLEAYMNFGLTK 332 (449)
Q Consensus 256 L~~lGv~~~~i~~li~~~P~lL~~s~~~l~~~v~-~l~~lG~~~~~~~~~~-a~~~i~~-~s~~~l~~k~~~l~~lG~s~ 332 (449)
-...|.-...+..+....|.++.. +.+... .+.+=++++.+..++. +..+..+ ..+..++..++--.+.|.|.
T Consensus 146 ~~~~g~~~~~~~~~~~~~P~~~~~----~~~~~~~~~~~~~L~~k~reLi~la~~aa~~~~~~~~l~~Hi~~al~~G~t~ 221 (257)
T d2q0ta1 146 ETNRGYWHPTWEGLLELDPDLFEA----YVEFSSVPWRTGVLSPKIKEFMYCAFDASATHLYVPGLKLHIRNALRYGATA 221 (257)
T ss_dssp HHHHSCCCHHHHHHHHHCHHHHHH----HHHHHHHHHHHCCSCHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHhccccHHHHHHHhcCHHHHHH----HHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCCH
Confidence 333566666666666666654321 111111 1345577777765442 2222222 23667888888888999999
Q ss_pred HHHHHHHhcCC
Q 013135 333 DEVYSAFRRQP 343 (449)
Q Consensus 333 ~ev~~~v~~~P 343 (449)
+||..++.-.+
T Consensus 222 eEi~eal~~~~ 232 (257)
T d2q0ta1 222 EELMELLEIVS 232 (257)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 99998776443
Done!