Query 013138
Match_columns 449
No_of_seqs 114 out of 1168
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 4.3E-46 9.2E-51 391.6 28.3 421 4-437 121-546 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.9E-35 4.1E-40 297.9 18.0 327 31-405 115-451 (498)
3 PRK15462 dipeptide/tripeptide 100.0 1.3E-29 2.9E-34 263.1 28.4 332 34-408 101-438 (493)
4 PRK10207 dipeptide/tripeptide 100.0 1.7E-29 3.7E-34 264.6 28.7 330 34-408 106-439 (489)
5 PF00854 PTR2: POT family; In 100.0 7.8E-31 1.7E-35 265.8 12.7 338 29-394 29-370 (372)
6 TIGR00924 yjdL_sub1_fam amino 100.0 6.1E-28 1.3E-32 252.3 27.2 327 32-407 101-440 (475)
7 TIGR00926 2A1704 Peptide:H+ sy 100.0 3.2E-27 7E-32 253.0 31.2 252 33-330 85-343 (654)
8 PRK09584 tppB putative tripept 100.0 1.1E-27 2.4E-32 251.8 27.3 319 33-407 112-441 (500)
9 PRK14995 methyl viologen resis 99.8 9.7E-19 2.1E-23 184.0 17.7 321 31-409 92-412 (495)
10 TIGR00711 efflux_EmrB drug res 99.8 9.1E-18 2E-22 175.1 17.2 319 31-409 88-409 (485)
11 TIGR00900 2A0121 H+ Antiporter 99.7 3.5E-15 7.5E-20 148.7 22.5 268 32-409 91-362 (365)
12 PRK03545 putative arabinose tr 99.7 4.2E-15 9E-20 151.3 23.3 84 31-120 95-178 (390)
13 PF07690 MFS_1: Major Facilita 99.7 1.1E-15 2.5E-20 151.6 16.1 267 32-401 84-352 (352)
14 PRK10504 putative transporter; 99.7 5.4E-15 1.2E-19 154.2 21.9 319 31-412 96-417 (471)
15 PRK11646 multidrug resistance 99.6 2.3E-14 5E-19 146.8 20.0 263 31-410 97-359 (400)
16 TIGR00902 2A0127 phenyl propri 99.6 1.4E-13 3E-18 139.9 23.2 263 30-409 91-354 (382)
17 PRK10213 nepI ribonucleoside t 99.6 3E-13 6.5E-18 138.2 23.3 83 31-119 106-188 (394)
18 PRK06814 acylglycerophosphoeth 99.6 6.4E-14 1.4E-18 161.5 20.4 285 31-408 106-394 (1140)
19 PRK15402 multidrug efflux syst 99.6 3E-13 6.6E-18 138.3 23.2 266 31-408 99-368 (406)
20 PRK10489 enterobactin exporter 99.6 3.1E-13 6.7E-18 138.8 23.1 263 31-409 108-373 (417)
21 PRK11128 putative 3-phenylprop 99.6 5.4E-13 1.2E-17 135.5 22.8 262 31-409 92-354 (382)
22 PRK11195 lysophospholipid tran 99.6 4.6E-13 9.9E-18 136.8 21.9 262 37-408 92-354 (393)
23 TIGR00893 2A0114 d-galactonate 99.5 3.6E-13 7.8E-18 135.0 19.4 85 31-121 80-164 (399)
24 PRK05122 major facilitator sup 99.5 1E-12 2.3E-17 133.8 22.8 253 32-409 111-363 (399)
25 PF05977 MFS_3: Transmembrane 99.5 6.1E-13 1.3E-17 140.2 21.1 268 31-409 101-368 (524)
26 TIGR00710 efflux_Bcr_CflA drug 99.5 1.2E-12 2.7E-17 131.8 22.3 86 31-122 91-176 (385)
27 COG2814 AraJ Arabinose efflux 99.5 2.3E-12 5E-17 129.4 22.5 263 28-409 96-360 (394)
28 PRK11551 putative 3-hydroxyphe 99.5 1.1E-12 2.3E-17 134.0 20.6 82 31-118 101-182 (406)
29 TIGR00895 2A0115 benzoate tran 99.5 6.4E-12 1.4E-16 126.7 25.0 81 31-117 103-183 (398)
30 PRK09874 drug efflux system pr 99.5 1.2E-12 2.5E-17 133.5 19.5 267 31-408 105-371 (408)
31 PRK12382 putative transporter; 99.5 1.8E-12 3.8E-17 131.9 20.7 253 31-409 110-363 (392)
32 TIGR00883 2A0106 metabolite-pr 99.5 2.2E-12 4.7E-17 129.8 20.2 80 34-119 97-184 (394)
33 cd06174 MFS The Major Facilita 99.5 3.5E-12 7.7E-17 125.9 21.1 241 31-409 85-326 (352)
34 TIGR00899 2A0120 sugar efflux 99.5 4.5E-12 9.8E-17 127.4 22.1 85 31-121 85-171 (375)
35 PRK10054 putative transporter; 99.5 1.9E-12 4E-17 132.4 19.3 261 32-409 95-358 (395)
36 PRK15403 multidrug efflux syst 99.5 6.9E-12 1.5E-16 129.0 23.4 85 31-121 102-186 (413)
37 TIGR00903 2A0129 major facilit 99.5 4E-12 8.6E-17 128.9 21.1 81 31-118 77-157 (368)
38 TIGR00901 2A0125 AmpG-related 99.5 5.6E-12 1.2E-16 126.5 21.2 84 32-121 82-173 (356)
39 PRK09705 cynX putative cyanate 99.5 5.8E-12 1.3E-16 128.6 21.3 77 31-114 95-172 (393)
40 PRK10091 MFS transport protein 99.4 1.5E-11 3.3E-16 124.9 23.3 84 31-120 89-172 (382)
41 TIGR00881 2A0104 phosphoglycer 99.4 5.9E-12 1.3E-16 125.9 19.2 84 31-120 81-165 (379)
42 PRK08633 2-acyl-glycerophospho 99.4 7.9E-12 1.7E-16 144.2 22.7 269 31-408 101-382 (1146)
43 TIGR00891 2A0112 putative sial 99.4 7.8E-12 1.7E-16 126.6 19.5 82 31-118 98-181 (405)
44 PRK03633 putative MFS family t 99.4 3.3E-11 7.2E-16 122.3 23.7 69 31-105 92-160 (381)
45 TIGR00894 2A0114euk Na(+)-depe 99.4 1.7E-11 3.7E-16 127.8 21.2 83 32-120 130-213 (465)
46 TIGR00890 2A0111 Oxalate/Forma 99.4 1.2E-11 2.6E-16 123.5 19.2 84 31-121 89-172 (377)
47 PRK11102 bicyclomycin/multidru 99.4 2.3E-11 5.1E-16 122.6 21.1 84 32-121 78-161 (377)
48 TIGR00892 2A0113 monocarboxyla 99.4 1.4E-11 3E-16 128.4 19.2 86 32-124 106-192 (455)
49 PRK12307 putative sialic acid 99.4 2.4E-11 5.3E-16 124.8 20.5 78 31-114 104-181 (426)
50 PRK11652 emrD multidrug resist 99.4 3.1E-11 6.7E-16 122.9 20.1 81 31-117 94-174 (394)
51 PRK11043 putative transporter; 99.4 6.7E-11 1.4E-15 120.7 22.4 85 31-121 92-176 (401)
52 TIGR00879 SP MFS transporter, 99.4 8.5E-11 1.8E-15 121.1 23.4 85 31-121 125-212 (481)
53 TIGR00897 2A0118 polyol permea 99.4 1.6E-10 3.5E-15 118.2 24.1 75 32-112 104-179 (402)
54 PRK10642 proline/glycine betai 99.4 1E-10 2.2E-15 123.1 23.1 77 34-116 119-203 (490)
55 PRK10473 multidrug efflux syst 99.4 1E-10 2.3E-15 118.9 22.3 85 31-121 89-173 (392)
56 TIGR02332 HpaX 4-hydroxyphenyl 99.3 1.9E-10 4.1E-15 118.3 23.4 81 31-117 94-180 (412)
57 KOG2532 Permease of the major 99.3 1.6E-11 3.5E-16 127.5 15.6 288 32-409 127-418 (466)
58 PRK11663 regulatory protein Uh 99.3 1.5E-10 3.2E-15 119.8 22.4 81 31-117 109-189 (434)
59 PRK09952 shikimate transporter 99.3 2.2E-10 4.8E-15 118.7 23.6 76 34-115 126-209 (438)
60 TIGR01272 gluP glucose/galacto 99.3 1.4E-10 3.1E-15 114.7 21.1 79 31-115 8-102 (310)
61 KOG1330 Sugar transporter/spin 99.3 1.2E-11 2.7E-16 124.4 13.1 89 31-125 119-208 (493)
62 PRK10406 alpha-ketoglutarate t 99.3 2.3E-10 5E-15 118.3 22.4 79 32-116 123-209 (432)
63 TIGR00896 CynX cyanate transpo 99.3 2.4E-10 5.3E-15 114.6 21.7 79 31-116 85-165 (355)
64 PRK15011 sugar efflux transpor 99.3 1.8E-10 3.9E-15 117.5 20.2 85 32-122 104-190 (393)
65 PRK10077 xylE D-xylose transpo 99.3 3.7E-10 8E-15 117.8 23.0 84 31-120 118-209 (479)
66 PRK09556 uhpT sugar phosphate 99.3 1.2E-10 2.6E-15 121.6 19.0 81 31-117 120-203 (467)
67 PRK11273 glpT sn-glycerol-3-ph 99.3 3E-10 6.4E-15 118.2 21.8 81 32-118 119-200 (452)
68 PRK03699 putative transporter; 99.3 2.4E-10 5.1E-15 116.6 20.5 83 31-119 93-176 (394)
69 PRK11010 ampG muropeptide tran 99.3 4.4E-10 9.6E-15 118.3 22.8 85 31-121 105-190 (491)
70 TIGR00792 gph sugar (Glycoside 99.3 5E-10 1.1E-14 115.4 22.2 92 302-412 284-382 (437)
71 PRK15075 citrate-proton sympor 99.3 4.5E-10 9.7E-15 116.2 21.9 73 35-113 119-199 (434)
72 TIGR00898 2A0119 cation transp 99.3 7.2E-10 1.6E-14 116.7 23.6 83 31-122 178-260 (505)
73 PRK03893 putative sialic acid 99.3 1.6E-10 3.6E-15 121.1 18.5 78 31-114 106-183 (496)
74 PRK11902 ampG muropeptide tran 99.3 1.2E-09 2.5E-14 111.8 24.0 84 31-120 92-176 (402)
75 PRK10133 L-fucose transporter; 99.2 6.6E-10 1.4E-14 115.3 20.2 64 30-99 114-177 (438)
76 TIGR00886 2A0108 nitrite extru 99.2 3.4E-10 7.4E-15 113.4 17.4 72 32-110 90-171 (366)
77 TIGR00712 glpT glycerol-3-phos 99.2 9.7E-10 2.1E-14 113.8 20.5 83 32-120 117-200 (438)
78 COG2223 NarK Nitrate/nitrite t 99.2 2.5E-10 5.3E-15 114.1 15.0 267 30-409 102-374 (417)
79 PF06609 TRI12: Fungal trichot 99.2 6E-10 1.3E-14 118.0 18.5 321 30-407 128-464 (599)
80 PRK15034 nitrate/nitrite trans 99.2 1.8E-09 3.9E-14 111.8 20.5 87 31-124 126-230 (462)
81 PRK09528 lacY galactoside perm 99.2 7.4E-10 1.6E-14 113.9 16.3 88 302-409 289-377 (420)
82 TIGR02718 sider_RhtX_FptX side 99.2 5.6E-09 1.2E-13 106.2 22.4 79 37-121 101-179 (390)
83 TIGR01299 synapt_SV2 synaptic 99.1 8.1E-09 1.8E-13 113.0 23.7 85 31-121 253-350 (742)
84 PRK09848 glucuronide transport 99.1 9.5E-09 2.1E-13 106.7 22.8 93 302-412 291-390 (448)
85 TIGR00805 oat sodium-independe 99.1 3.7E-09 8.1E-14 114.5 18.8 86 32-123 171-278 (633)
86 TIGR00882 2A0105 oligosacchari 99.1 7E-09 1.5E-13 105.7 19.2 88 302-409 281-369 (396)
87 TIGR00885 fucP L-fucose:H+ sym 99.1 1.2E-08 2.6E-13 105.0 20.5 82 31-118 92-199 (410)
88 TIGR00788 fbt folate/biopterin 99.1 2.2E-09 4.9E-14 112.3 15.0 290 33-410 120-413 (468)
89 COG2271 UhpC Sugar phosphate p 99.1 3.4E-09 7.3E-14 106.0 15.0 91 29-125 113-206 (448)
90 KOG3764 Vesicular amine transp 99.0 1.9E-09 4.1E-14 106.7 12.2 92 28-124 154-245 (464)
91 PLN00028 nitrate transmembrane 99.0 6E-09 1.3E-13 109.3 16.6 83 31-120 122-213 (476)
92 TIGR00887 2A0109 phosphate:H+ 99.0 7.6E-08 1.7E-12 101.5 23.4 80 33-118 115-217 (502)
93 KOG2615 Permease of the major 99.0 9.7E-09 2.1E-13 101.3 14.4 64 349-412 353-416 (451)
94 TIGR01301 GPH_sucrose GPH fami 98.9 1.5E-07 3.3E-12 98.1 22.4 305 33-410 114-444 (477)
95 PF03209 PUCC: PUCC protein; 98.9 1.3E-07 2.8E-12 94.9 20.8 272 31-412 87-365 (403)
96 PF13347 MFS_2: MFS/sugar tran 98.9 8.3E-08 1.8E-12 99.1 19.7 273 33-415 103-389 (428)
97 PRK09669 putative symporter Ya 98.9 1.6E-07 3.6E-12 97.4 21.3 67 347-413 318-391 (444)
98 TIGR00889 2A0110 nucleoside tr 98.9 1.3E-07 2.8E-12 97.6 19.7 92 302-409 278-370 (418)
99 PRK10429 melibiose:sodium symp 98.7 1.5E-06 3.3E-11 91.0 21.0 96 302-412 293-395 (473)
100 PF11700 ATG22: Vacuole efflux 98.6 1.2E-05 2.7E-10 84.2 23.9 66 347-412 379-444 (477)
101 COG2807 CynX Cyanate permease 98.5 5.6E-06 1.2E-10 81.7 17.5 81 32-119 98-179 (395)
102 KOG2533 Permease of the major 98.5 6.8E-06 1.5E-10 86.1 19.0 86 31-122 132-223 (495)
103 PRK11462 putative transporter; 98.5 2.2E-05 4.9E-10 82.0 22.5 82 33-119 109-197 (460)
104 PF03825 Nuc_H_symport: Nucleo 98.5 1.8E-05 3.8E-10 81.2 20.9 101 291-409 262-363 (400)
105 KOG3626 Organic anion transpor 98.5 3.1E-06 6.8E-11 91.0 15.6 110 15-130 217-347 (735)
106 KOG4686 Predicted sugar transp 98.5 3.3E-06 7.1E-11 80.6 13.4 279 26-409 129-413 (459)
107 KOG0255 Synaptic vesicle trans 98.4 4.1E-05 8.9E-10 81.1 22.7 85 28-121 166-250 (521)
108 KOG0569 Permease of the major 98.4 7E-05 1.5E-09 77.9 22.5 304 31-409 114-429 (485)
109 KOG2504 Monocarboxylate transp 98.4 3.5E-05 7.7E-10 81.3 20.0 309 32-410 133-450 (509)
110 PRK11646 multidrug resistance 98.3 2.3E-05 5E-10 80.2 15.5 97 289-408 63-159 (400)
111 COG0738 FucP Fucose permease [ 98.2 5.3E-05 1.1E-09 75.9 16.3 66 29-100 100-165 (422)
112 PF01306 LacY_symp: LacY proto 98.2 5.2E-05 1.1E-09 77.4 16.6 113 269-409 261-374 (412)
113 PRK11663 regulatory protein Uh 98.2 6.9E-05 1.5E-09 77.6 17.4 87 302-408 85-171 (434)
114 PF03137 OATP: Organic Anion T 98.2 2.7E-07 5.8E-12 98.0 -0.9 94 32-131 140-255 (539)
115 TIGR02332 HpaX 4-hydroxyphenyl 98.2 6.1E-05 1.3E-09 77.5 16.1 87 302-408 70-156 (412)
116 TIGR00880 2_A_01_02 Multidrug 98.1 6.7E-06 1.5E-10 69.5 6.0 85 32-122 50-134 (141)
117 TIGR00885 fucP L-fucose:H+ sym 98.1 9.7E-05 2.1E-09 76.0 15.5 90 302-408 65-154 (410)
118 COG2270 Permeases of the major 98.1 0.0005 1.1E-08 69.5 19.6 121 269-412 285-405 (438)
119 TIGR00806 rfc RFC reduced fola 98.0 0.00034 7.3E-09 72.5 18.0 83 31-121 113-198 (511)
120 TIGR00891 2A0112 putative sial 98.0 0.00013 2.8E-09 73.7 14.8 88 302-409 74-161 (405)
121 PRK10054 putative transporter; 98.0 0.0002 4.2E-09 73.3 16.1 95 291-408 62-156 (395)
122 KOG2816 Predicted transporter 98.0 6.8E-05 1.5E-09 78.1 12.6 266 47-410 126-392 (463)
123 PF07690 MFS_1: Major Facilita 98.0 0.00014 3.1E-09 71.8 14.6 109 269-408 37-145 (352)
124 TIGR00895 2A0115 benzoate tran 98.0 6.2E-05 1.3E-09 75.7 12.0 87 302-408 79-165 (398)
125 PRK10213 nepI ribonucleoside t 98.0 0.00028 6.1E-09 72.1 16.9 88 302-409 82-169 (394)
126 PRK03545 putative arabinose tr 98.0 0.00021 4.5E-09 72.6 15.9 87 302-408 71-157 (390)
127 COG2211 MelB Na+/melibiose sym 97.9 0.001 2.2E-08 68.9 20.0 94 302-413 299-399 (467)
128 TIGR00880 2_A_01_02 Multidrug 97.9 0.00016 3.5E-09 60.9 11.8 87 302-408 25-111 (141)
129 PRK03633 putative MFS family t 97.9 0.00022 4.7E-09 72.3 14.7 87 302-408 68-154 (381)
130 TIGR00711 efflux_EmrB drug res 97.9 0.00014 2.9E-09 75.9 13.5 110 268-408 41-150 (485)
131 TIGR00710 efflux_Bcr_CflA drug 97.9 0.00021 4.5E-09 71.8 14.2 87 302-408 67-153 (385)
132 TIGR00893 2A0114 d-galactonate 97.9 0.00014 3E-09 72.6 12.8 109 269-408 34-142 (399)
133 KOG0254 Predicted transporter 97.9 0.0016 3.4E-08 69.1 20.7 78 31-114 140-218 (513)
134 PRK10504 putative transporter; 97.9 0.00032 6.9E-09 73.2 15.2 88 302-409 72-159 (471)
135 TIGR00900 2A0121 H+ Antiporter 97.9 0.00033 7.2E-09 69.4 14.7 114 269-408 39-152 (365)
136 KOG1330 Sugar transporter/spin 97.9 2.9E-05 6.2E-10 79.0 6.9 112 268-410 72-183 (493)
137 PF03092 BT1: BT1 family; Int 97.9 0.00019 4.1E-09 74.5 13.2 86 31-120 84-169 (433)
138 PRK11551 putative 3-hydroxyphe 97.8 0.00076 1.6E-08 68.7 17.0 86 302-407 77-162 (406)
139 PRK12307 putative sialic acid 97.8 0.00042 9.1E-09 71.1 15.1 86 302-407 80-165 (426)
140 PRK05122 major facilitator sup 97.8 0.00031 6.7E-09 71.4 14.0 103 291-408 70-172 (399)
141 TIGR00886 2A0108 nitrite extru 97.8 0.00036 7.7E-09 69.8 14.0 108 269-408 42-150 (366)
142 PRK10133 L-fucose transporter; 97.8 0.00054 1.2E-08 71.1 15.5 89 302-407 88-176 (438)
143 PRK09556 uhpT sugar phosphate 97.8 0.00013 2.9E-09 76.1 11.0 90 302-406 91-180 (467)
144 PRK14995 methyl viologen resis 97.8 0.00057 1.2E-08 72.1 15.5 111 268-409 45-156 (495)
145 TIGR01299 synapt_SV2 synaptic 97.8 0.00055 1.2E-08 75.4 15.6 87 302-408 229-315 (742)
146 PRK09874 drug efflux system pr 97.8 3.6E-05 7.8E-10 78.3 5.9 87 32-124 310-396 (408)
147 PRK12382 putative transporter; 97.7 0.00046 9.9E-09 70.1 13.6 95 302-408 78-172 (392)
148 cd06174 MFS The Major Facilita 97.7 0.00038 8.3E-09 68.3 12.5 88 302-409 61-148 (352)
149 PRK10489 enterobactin exporter 97.7 0.00049 1.1E-08 70.6 13.4 92 302-408 79-170 (417)
150 TIGR00889 2A0110 nucleoside tr 97.7 4.9E-05 1.1E-09 78.4 5.7 85 33-123 308-399 (418)
151 PRK11273 glpT sn-glycerol-3-ph 97.7 0.0015 3.3E-08 67.9 16.9 93 291-402 82-174 (452)
152 PRK10091 MFS transport protein 97.7 0.001 2.2E-08 67.5 15.0 109 269-408 43-151 (382)
153 TIGR00806 rfc RFC reduced fola 97.7 0.0015 3.4E-08 67.6 16.0 86 302-408 89-174 (511)
154 TIGR00712 glpT glycerol-3-phos 97.7 0.0012 2.6E-08 68.4 15.4 89 302-406 88-176 (438)
155 PRK03893 putative sialic acid 97.6 0.0011 2.4E-08 69.5 15.2 87 302-408 82-168 (496)
156 TIGR00879 SP MFS transporter, 97.6 0.00037 8E-09 71.6 11.4 86 302-404 98-183 (481)
157 KOG3764 Vesicular amine transp 97.6 0.00022 4.7E-09 71.4 8.6 109 282-413 116-225 (464)
158 COG2271 UhpC Sugar phosphate p 97.6 0.00033 7.1E-09 70.8 9.7 90 292-404 84-173 (448)
159 PRK09705 cynX putative cyanate 97.6 0.00078 1.7E-08 68.7 12.6 86 302-408 71-156 (393)
160 TIGR00892 2A0113 monocarboxyla 97.6 4E-05 8.7E-10 79.9 3.1 86 31-122 331-417 (455)
161 TIGR00881 2A0104 phosphoglycer 97.6 0.00019 4.2E-09 71.5 7.6 81 302-402 57-137 (379)
162 PRK15034 nitrate/nitrite trans 97.5 0.0027 5.8E-08 66.2 16.1 87 302-404 97-183 (462)
163 PRK11102 bicyclomycin/multidru 97.5 0.0013 2.9E-08 66.0 13.5 87 302-408 53-139 (377)
164 PRK10473 multidrug efflux syst 97.5 0.0023 4.9E-08 64.9 15.0 87 302-408 65-151 (392)
165 TIGR00897 2A0118 polyol permea 97.5 0.0017 3.6E-08 66.4 14.1 90 302-407 75-165 (402)
166 PRK10642 proline/glycine betai 97.5 0.0024 5.3E-08 67.2 15.6 111 278-407 67-177 (490)
167 COG2814 AraJ Arabinose efflux 97.5 0.0026 5.6E-08 64.6 14.8 113 266-409 50-162 (394)
168 PRK03699 putative transporter; 97.5 0.0017 3.7E-08 66.1 13.7 86 302-407 69-154 (394)
169 PRK11195 lysophospholipid tran 97.5 0.0016 3.6E-08 66.4 13.4 107 269-409 43-149 (393)
170 TIGR00926 2A1704 Peptide:H+ sy 97.4 0.0042 9E-08 67.7 16.3 253 33-333 82-343 (654)
171 TIGR00894 2A0114euk Na(+)-depe 97.4 0.0011 2.4E-08 69.1 11.5 90 302-409 103-192 (465)
172 PRK15402 multidrug efflux syst 97.4 0.0046 1E-07 63.1 15.8 87 302-408 75-161 (406)
173 TIGR00924 yjdL_sub1_fam amino 97.4 0.0014 3E-08 68.9 11.9 88 302-409 76-166 (475)
174 PRK15403 multidrug efflux syst 97.4 0.0063 1.4E-07 62.6 16.4 87 302-408 78-164 (413)
175 PRK09584 tppB putative tripept 97.4 0.002 4.3E-08 68.1 12.7 88 303-409 86-175 (500)
176 TIGR00887 2A0109 phosphate:H+ 97.3 0.0024 5.3E-08 67.4 12.9 93 302-408 83-175 (502)
177 TIGR00899 2A0120 sugar efflux 97.3 0.0047 1E-07 61.8 14.1 101 285-408 46-149 (375)
178 TIGR00805 oat sodium-independe 97.3 0.00072 1.6E-08 73.6 8.5 133 266-409 70-233 (633)
179 PRK11043 putative transporter; 97.3 0.009 1.9E-07 60.8 15.9 87 302-408 68-154 (401)
180 TIGR00890 2A0111 Oxalate/Forma 97.3 0.0035 7.6E-08 62.3 12.6 85 302-407 65-149 (377)
181 PRK08633 2-acyl-glycerophospho 97.2 0.0061 1.3E-07 70.8 16.0 91 302-409 74-164 (1146)
182 PRK11902 ampG muropeptide tran 97.2 0.0069 1.5E-07 61.8 14.6 85 307-408 70-154 (402)
183 PLN00028 nitrate transmembrane 97.2 0.0042 9E-08 65.2 13.0 85 302-407 98-182 (476)
184 PRK09952 shikimate transporter 97.2 0.0023 4.9E-08 66.4 10.7 112 278-408 74-185 (438)
185 TIGR00901 2A0125 AmpG-related 97.2 0.0044 9.6E-08 61.9 12.5 106 285-409 38-144 (356)
186 PRK10077 xylE D-xylose transpo 97.2 0.0085 1.8E-07 62.4 15.0 98 302-407 82-179 (479)
187 PRK11652 emrD multidrug resist 97.2 0.011 2.4E-07 59.9 15.4 87 302-408 70-156 (394)
188 PRK10207 dipeptide/tripeptide 97.2 0.0048 1E-07 65.1 12.8 89 302-409 78-168 (489)
189 PF05977 MFS_3: Transmembrane 97.1 0.018 3.9E-07 61.2 16.7 117 267-409 48-164 (524)
190 TIGR00898 2A0119 cation transp 97.1 0.0043 9.3E-08 65.3 12.0 86 302-407 154-239 (505)
191 PTZ00207 hypothetical protein; 97.1 0.01 2.2E-07 63.8 14.6 91 302-407 88-178 (591)
192 TIGR00883 2A0106 metabolite-pr 97.1 0.0027 5.8E-08 63.5 9.9 102 292-408 55-156 (394)
193 PRK10406 alpha-ketoglutarate t 97.1 0.012 2.6E-07 60.8 14.9 110 279-407 74-183 (432)
194 PRK11010 ampG muropeptide tran 97.1 0.019 4.1E-07 60.5 16.5 107 283-408 60-167 (491)
195 PRK15075 citrate-proton sympor 97.0 0.01 2.3E-07 61.2 13.4 108 282-408 70-177 (434)
196 TIGR00896 CynX cyanate transpo 97.0 0.0075 1.6E-07 60.2 12.0 107 269-408 40-146 (355)
197 PRK06814 acylglycerophosphoeth 97.0 0.011 2.4E-07 68.8 14.8 64 346-409 106-169 (1140)
198 TIGR00903 2A0129 major facilit 97.0 0.012 2.7E-07 59.5 13.3 62 346-408 77-138 (368)
199 KOG2533 Permease of the major 96.9 0.024 5.2E-07 59.7 15.2 74 346-419 132-205 (495)
200 PF05978 UNC-93: Ion channel r 96.9 0.03 6.6E-07 49.5 13.2 86 302-408 64-149 (156)
201 PTZ00207 hypothetical protein; 96.8 0.16 3.4E-06 54.7 20.9 77 31-116 118-195 (591)
202 KOG3762 Predicted transporter 96.8 0.0076 1.6E-07 62.8 10.3 118 261-409 403-521 (618)
203 PRK09528 lacY galactoside perm 96.8 0.0011 2.3E-08 68.2 4.2 84 32-121 314-398 (420)
204 PRK15462 dipeptide/tripeptide 96.8 0.015 3.3E-07 61.2 12.5 87 303-408 74-162 (493)
205 PF00083 Sugar_tr: Sugar (and 96.8 2.1E-06 4.6E-11 88.8 -16.3 78 32-115 101-181 (451)
206 KOG2325 Predicted transporter/ 96.7 0.0021 4.5E-08 66.8 5.3 70 340-409 379-449 (488)
207 TIGR01301 GPH_sucrose GPH fami 96.7 0.061 1.3E-06 56.4 16.4 131 274-407 41-175 (477)
208 PF11700 ATG22: Vacuole efflux 96.6 0.0037 8E-08 65.6 6.7 88 31-124 378-466 (477)
209 PRK15011 sugar efflux transpor 96.6 0.067 1.4E-06 54.4 15.3 62 347-408 104-167 (393)
210 COG0738 FucP Fucose permease [ 96.5 0.059 1.3E-06 54.5 13.7 91 302-409 75-165 (422)
211 KOG2532 Permease of the major 96.4 0.023 5E-07 59.5 10.9 91 302-410 100-190 (466)
212 KOG2563 Permease of the major 96.4 0.033 7.2E-07 57.0 11.4 59 350-408 361-419 (480)
213 TIGR00792 gph sugar (Glycoside 96.4 0.032 7E-07 57.2 11.8 125 269-407 32-159 (437)
214 TIGR00902 2A0127 phenyl propri 96.3 0.006 1.3E-07 61.9 5.9 83 31-121 291-374 (382)
215 KOG3098 Uncharacterized conser 96.2 0.8 1.7E-05 47.7 20.5 128 268-403 279-407 (461)
216 PF02487 CLN3: CLN3 protein; 96.1 1.7 3.8E-05 44.4 22.0 63 346-408 333-395 (402)
217 KOG0254 Predicted transporter 96.1 0.041 8.9E-07 58.3 10.9 81 302-402 116-196 (513)
218 KOG2615 Permease of the major 96.0 0.01 2.2E-07 59.5 5.4 96 290-409 86-181 (451)
219 PF03137 OATP: Organic Anion T 96.0 0.0013 2.9E-08 70.0 -0.9 132 267-409 41-202 (539)
220 TIGR00882 2A0105 oligosacchari 95.9 0.089 1.9E-06 53.4 11.9 56 351-408 102-157 (396)
221 TIGR02718 sider_RhtX_FptX side 95.8 0.012 2.7E-07 59.6 5.4 77 39-120 309-385 (390)
222 PF06609 TRI12: Fungal trichot 95.8 0.15 3.3E-06 54.8 13.4 109 267-407 81-189 (599)
223 KOG2504 Monocarboxylate transp 95.8 0.03 6.6E-07 59.3 8.1 111 266-408 83-194 (509)
224 KOG0252 Inorganic phosphate tr 95.7 0.041 8.9E-07 56.5 8.1 93 302-409 375-467 (538)
225 KOG0569 Permease of the major 95.5 0.18 3.8E-06 52.9 12.5 101 281-405 73-173 (485)
226 PF03825 Nuc_H_symport: Nucleo 95.4 0.024 5.2E-07 58.2 5.5 82 37-124 305-393 (400)
227 PF03209 PUCC: PUCC protein; 95.2 0.55 1.2E-05 47.8 14.5 116 288-409 30-150 (403)
228 COG2223 NarK Nitrate/nitrite t 95.2 0.098 2.1E-06 53.1 9.1 115 264-405 46-160 (417)
229 PRK10429 melibiose:sodium symp 95.1 0.28 6.1E-06 51.3 12.7 123 269-405 39-164 (473)
230 PRK11128 putative 3-phenylprop 95.1 0.21 4.4E-06 50.6 11.4 62 346-409 92-153 (382)
231 KOG0253 Synaptic vesicle trans 95.0 1.6 3.4E-05 44.2 16.4 89 28-124 161-250 (528)
232 PRK11462 putative transporter; 94.6 0.41 8.8E-06 50.1 12.4 124 269-406 42-168 (460)
233 PRK09669 putative symporter Ya 94.3 0.39 8.5E-06 49.7 11.3 123 269-405 42-167 (444)
234 KOG3626 Organic anion transpor 94.3 0.1 2.2E-06 56.9 7.0 106 304-409 161-298 (735)
235 KOG2325 Predicted transporter/ 94.2 0.45 9.7E-06 49.8 11.1 117 267-410 74-191 (488)
236 KOG0255 Synaptic vesicle trans 93.9 0.48 1E-05 50.1 11.3 112 269-408 119-230 (521)
237 COG2807 CynX Cyanate permease 93.8 0.55 1.2E-05 47.1 10.3 86 302-409 74-159 (395)
238 PF13347 MFS_2: MFS/sugar tran 93.3 0.19 4.1E-06 51.8 6.7 128 269-408 34-164 (428)
239 KOG4686 Predicted sugar transp 92.5 0.27 5.8E-06 47.8 5.9 76 36-117 355-433 (459)
240 TIGR01272 gluP glucose/galacto 92.1 0.5 1.1E-05 46.6 7.6 64 346-409 8-71 (310)
241 COG0477 ProP Permeases of the 91.8 0.27 5.9E-06 46.0 5.2 77 32-114 93-173 (338)
242 PRK09848 glucuronide transport 91.4 3 6.4E-05 43.1 12.9 113 269-394 41-156 (448)
243 PF01770 Folate_carrier: Reduc 90.0 26 0.00055 36.1 18.5 52 346-397 338-389 (412)
244 PF00083 Sugar_tr: Sugar (and 89.8 0.015 3.2E-07 60.2 -6.1 89 302-407 73-161 (451)
245 PF06963 FPN1: Ferroportin1 (F 89.8 27 0.00059 36.2 19.4 59 346-404 354-412 (432)
246 TIGR00769 AAA ADP/ATP carrier 89.6 11 0.00024 39.6 15.0 54 354-407 382-436 (472)
247 PF06813 Nodulin-like: Nodulin 89.2 8.8 0.00019 36.7 12.9 92 302-407 63-154 (250)
248 TIGR00788 fbt folate/biopterin 88.5 0.64 1.4E-05 48.7 5.1 68 36-109 354-426 (468)
249 PF05631 DUF791: Protein of un 88.4 6.5 0.00014 39.5 11.8 102 25-127 112-217 (354)
250 PF00854 PTR2: POT family; In 87.9 2.4 5.2E-05 42.8 8.6 92 306-408 2-96 (372)
251 COG0477 ProP Permeases of the 87.4 15 0.00034 33.8 13.5 62 347-408 93-156 (338)
252 KOG0637 Sucrose transporter an 87.0 3.6 7.8E-05 42.6 9.1 162 220-405 32-200 (498)
253 COG2270 Permeases of the major 86.1 0.78 1.7E-05 46.9 3.8 82 35-122 343-425 (438)
254 PF01306 LacY_symp: LacY proto 85.7 0.69 1.5E-05 47.5 3.3 85 31-121 310-395 (412)
255 KOG3762 Predicted transporter 84.6 0.86 1.9E-05 48.0 3.4 93 32-130 458-551 (618)
256 KOG4332 Predicted sugar transp 83.2 22 0.00047 34.6 11.8 43 352-394 348-390 (454)
257 KOG3098 Uncharacterized conser 81.8 7.7 0.00017 40.5 9.0 88 302-410 77-164 (461)
258 COG2211 MelB Na+/melibiose sym 79.8 30 0.00064 36.3 12.5 128 269-410 45-175 (467)
259 PF01770 Folate_carrier: Reduc 77.0 78 0.0017 32.7 14.4 83 306-409 72-154 (412)
260 COG3104 PTR2 Dipeptide/tripept 73.8 4.8 0.0001 42.1 4.8 80 30-115 391-476 (498)
261 PF03092 BT1: BT1 family; Int 72.4 31 0.00068 35.7 10.6 86 307-409 61-149 (433)
262 PF03219 TLC: TLC ATP/ADP tran 66.7 70 0.0015 33.9 11.7 40 55-100 166-205 (491)
263 KOG2563 Permease of the major 65.2 21 0.00045 37.1 7.1 93 302-408 106-200 (480)
264 PF12832 MFS_1_like: MFS_1 lik 62.8 20 0.00044 27.4 5.1 62 239-314 13-74 (77)
265 PF02487 CLN3: CLN3 protein; 62.2 9.1 0.0002 39.3 4.0 62 32-99 334-395 (402)
266 PF01891 CbiM: Cobalt uptake s 61.2 1.3E+02 0.0028 27.7 11.2 99 271-379 106-204 (205)
267 PF05978 UNC-93: Ion channel r 60.0 14 0.0003 32.7 4.2 58 32-95 88-145 (156)
268 PF07672 MFS_Mycoplasma: Mycop 56.9 1.9E+02 0.0041 27.9 15.7 57 73-129 4-65 (267)
269 PF06813 Nodulin-like: Nodulin 56.0 48 0.001 31.7 7.5 84 31-121 94-177 (250)
270 KOG3574 Acetyl-CoA transporter 55.8 2.5E+02 0.0055 29.0 19.3 59 351-409 372-430 (510)
271 KOG2816 Predicted transporter 53.8 1.3E+02 0.0029 31.5 11.1 60 349-409 114-173 (463)
272 KOG0252 Inorganic phosphate tr 53.4 8.6 0.00019 40.1 2.1 94 302-409 111-205 (538)
273 TIGR00939 2a57 Equilibrative N 51.1 3E+02 0.0066 28.5 22.3 61 347-407 371-431 (437)
274 KOG4332 Predicted sugar transp 45.4 35 0.00075 33.3 4.6 82 34-121 345-426 (454)
275 PRK11909 cobalt transport prot 45.1 2.7E+02 0.0059 26.2 10.6 38 347-384 182-220 (230)
276 PRK07331 cobalt transport prot 43.3 2.7E+02 0.0058 27.7 10.7 34 348-381 186-220 (322)
277 TIGR00769 AAA ADP/ATP carrier 39.1 4.9E+02 0.011 27.4 14.6 61 349-409 129-190 (472)
278 KOG1237 H+/oligopeptide sympor 36.2 52 0.0011 35.5 4.9 67 28-100 453-519 (571)
279 KOG0637 Sucrose transporter an 35.7 19 0.00041 37.5 1.4 67 28-99 137-203 (498)
280 KOG1485 Mitochondrial Fe2+ tra 35.0 1.1E+02 0.0023 31.4 6.5 31 71-101 110-140 (412)
281 TIGR00939 2a57 Equilibrative N 34.8 47 0.001 34.6 4.1 58 32-95 371-428 (437)
282 PF03219 TLC: TLC ATP/ADP tran 32.9 80 0.0017 33.4 5.5 63 43-110 292-354 (491)
283 TIGR00123 cbiM cobalamin biosy 29.6 4.6E+02 0.01 24.3 10.5 30 351-380 182-211 (214)
284 TIGR02230 ATPase_gene1 F0F1-AT 29.6 1.3E+02 0.0027 24.5 4.9 30 76-105 44-73 (100)
285 PRK08319 cobalt transport prot 29.1 4.8E+02 0.01 24.4 10.0 31 351-381 182-212 (224)
286 PRK03612 spermidine synthase; 28.8 97 0.0021 33.0 5.4 74 39-119 116-191 (521)
287 KOG3574 Acetyl-CoA transporter 28.6 1.2E+02 0.0026 31.3 5.5 53 356-408 141-193 (510)
288 COG3202 ATP/ADP translocase [E 26.3 8.1E+02 0.018 26.0 13.9 37 59-101 174-210 (509)
289 PF13000 Acatn: Acetyl-coenzym 26.1 8.3E+02 0.018 26.1 13.9 59 350-408 407-465 (544)
290 KOG0253 Synaptic vesicle trans 24.8 1.2E+02 0.0027 31.1 4.9 85 25-121 430-514 (528)
291 PF06645 SPC12: Microsomal sig 23.7 1.2E+02 0.0027 23.1 3.7 45 75-122 8-52 (76)
292 PF12273 RCR: Chitin synthesis 23.2 48 0.001 28.1 1.5 9 105-113 1-9 (130)
293 KOG4142 Phospholipid methyltra 20.6 3.1E+02 0.0068 24.3 5.9 26 346-371 93-118 (208)
294 PF13000 Acatn: Acetyl-coenzym 20.0 5.3E+02 0.012 27.5 8.5 43 367-409 137-179 (544)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-46 Score=391.64 Aligned_cols=421 Identities=53% Similarity=0.904 Sum_probs=366.0
Q ss_pred EEeecccCCCCCC-CCCCCCCcccc-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH
Q 013138 4 LTVTASVSGLKPV-CHGPRGEETCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY 81 (449)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y 81 (449)
+|.++.+..++|. |--+...+.|. ++......|+.++.++++|.|+.+|+..++.+||++++++.+++.+.+.|+|+|
T Consensus 121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y 200 (571)
T KOG1237|consen 121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY 200 (571)
T ss_pred HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence 4667777777774 42333455788 888899999999999999999999999999999999777667777889999999
Q ss_pred HHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCc
Q 013138 82 FSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADK 161 (449)
Q Consensus 82 ~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~ 161 (449)
+..|+|..++-.+..|+.++.+|.+.|.++.+.+++++++|+.+.+.|+.++|.++|...+.+|+.++.++++...+.+.
T Consensus 201 f~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~ 280 (571)
T KOG1237|consen 201 FSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDP 280 (571)
T ss_pred HHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999988876553
Q ss_pred cchhhcccccccccCCcccCCCCccchhhhhhhhhccccccc-cCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhh
Q 013138 162 SLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKE-SVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYS 240 (449)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~ 240 (449)
..+ +. .....+...+.+.++++|++++......... ..++|++|+.++|||.|..+|.+|+|+..+.+|.++.
T Consensus 281 ~~~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~a 354 (571)
T KOG1237|consen 281 EEL-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYA 354 (571)
T ss_pred hhc-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 322 10 1111222344667889999887543321001 2467999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhccCCCCCC-ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHH
Q 013138 241 QMSSLFVLQGERMDTHVGNSS-FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSM 319 (449)
Q Consensus 241 q~~~~~~~~~~~~~~~~g~~g-~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~ 319 (449)
|+.+.+..|+..||++.+ + +++|++++..+..+.++++.|+.++++.|+.+|+.++++.+++..|+.+|+.+..++|
T Consensus 355 q~~t~~v~Q~~~mdr~~~--~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm 432 (571)
T KOG1237|consen 355 QMVTFFVLQATTMDRHLG--SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSM 432 (571)
T ss_pred hhhhheehhhhhcCCCCC--CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHH
Confidence 999999999999999988 6 9999999999999999999999999999999999887656899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHH
Q 013138 320 IAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYL 399 (449)
Q Consensus 320 l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~l 399 (449)
...+.+|..|++.+.+ .....+++|++|+++||+++|+||++.+++++|+.|+++|++||+.++++|.+..++|+.+
T Consensus 433 ~~aa~vE~krl~~~~~---~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~l 509 (571)
T KOG1237|consen 433 AVAGIVEAKRLKTAVS---LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYL 509 (571)
T ss_pred HHHHHHHHHHhhhhhh---ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887765 1223467999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhhcccccCCCcCCCC-CCCCCcchhhhhhhhh
Q 013138 400 SSLLVTIVTSISTKNGNLGWIP-DNLNRGHLHYFFWLLT 437 (449)
Q Consensus 400 g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 437 (449)
+.+++.++...+.+ ..+|++ +++|.+++++|||+++
T Consensus 510 ss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla 546 (571)
T KOG1237|consen 510 SSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLA 546 (571)
T ss_pred HHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHH
Confidence 99999999877654 448999 9999999999999987
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=297.93 Aligned_cols=327 Identities=25% Similarity=0.385 Sum_probs=251.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...++++++++++|.|++|||.+++++|+||++|+ ||+..|+++|+++|+|++++|.+.+++.+++||+..|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3567899999999999999999999999999999996 599999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccC--CCCCc------hhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCC
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQK--PGGSP------LTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDH 182 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~--~~~~~------~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 182 (449)
+++.+.++++.++++++++.... ++.++ +..+..++....+-. ++.. .+
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-------------l~ 247 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LTLL-------------LN 247 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HHHH-------------HH
Confidence 99999999999999988776532 11111 111222221111100 0000 00
Q ss_pred CCccchhhhhhhhhccc-cccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCC
Q 013138 183 TKDFSFFDKAAVEIQSD-NIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNS 260 (449)
Q Consensus 183 ~~~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~ 260 (449)
.+..++......+.... ... ....+ ++.. +|+|+.++++++++..++||++++|+++++..++. ..|++..
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~-~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-- 320 (498)
T COG3104 248 QNTFSGVLLVISILIAIIYFA-EAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-- 320 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc--
Confidence 00011111000000000 000 00011 2223 67888999999999999999999999999887774 4455534
Q ss_pred CceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 013138 261 SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYD 340 (449)
Q Consensus 261 g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~ 340 (449)
|+++|+++++++|++.++++.|+.+.+++|+.++. +++++..|+++|+.+++.+++.+....... .
T Consensus 321 g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~----------~ 386 (498)
T COG3104 321 GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGIWF----------G 386 (498)
T ss_pred ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHhh----------c
Confidence 79999999999999999999999999988877664 248999999999999999999888764431 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013138 341 LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 341 ~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.++...|+||+++.|+++++||.+++|.+++.+++.+|+++++.++|.|.+..+.|+.++..+.+
T Consensus 387 ~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 387 GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 12456999999999999999999999999999999999999999999999999999999988766
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.97 E-value=1.3e-29 Score=263.10 Aligned_cols=332 Identities=16% Similarity=0.175 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHH
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 113 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~ 113 (449)
..+++++.++++|.|.++|+..++++|+||+++ ++|+++++++|+..|+|+.++|.++|++.+++|||+.|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~----~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD----PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCC----ccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 346678888899999999999999999999875 2489999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhccccccccC---CCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh-
Q 013138 114 AMAIAVVSFFSGTRLFRNQK---PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF- 189 (449)
Q Consensus 114 ~~~l~~i~~~~~~~~~~~~~---~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l- 189 (449)
.++++++.++..++.+.+.. ++..+.......+...........+ .+... .+.. +....+
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~-~~~~~~~ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP----ALITV-----------LFWK-EWSVYAL 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH----HHHHH-----------HHHH-HHHHHHH
Confidence 88888888877766654321 1111101110000000000000000 00000 0000 000000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHH-hhhccCCCCCCceeCccc
Q 013138 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQG-ERMDTHVGNSSFKIPPAS 268 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~-~~~~~~~g~~g~~i~~~~ 268 (449)
................ .. ..-+|+|++..++++++..++||+.++|.++.+.+.+ +++|++++ |+++|++|
T Consensus 241 ~~~~~~~~~~~~~~~~-----~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~--g~~ip~~~ 312 (493)
T PRK15462 241 IVATIIGLGVLAKIYR-----KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF--GYTVPTAM 312 (493)
T ss_pred HHHHHHHHHHHHHHHH-----hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc--ceeeCHHH
Confidence 0000000000000000 01 1225677888999999999999999999999865554 67888888 99999999
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
++++|+++++++.|+.+.++.++. +++++++...|+++|++++++|++.+.+.... . ++...+|.
T Consensus 313 ~qslNp~~ii~l~P~~a~lw~~l~----~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~-------~~~~~~s~ 377 (493)
T PRK15462 313 FQSINAFAVMLCGVFLAWVVKESV----AGNRTVRIWGKFALGLGLMSAGFCILTLSARW----S-------AMYGHSSL 377 (493)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHh----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c-------CCCCCcCH
Confidence 999999999999999998654432 22234889999999999999999988765422 0 11224899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~~ 408 (449)
+|++..++++++||.+.+|.+++.+.+.+|++.+|++||+|++.. .+|+.+++.+.+...
T Consensus 378 ~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~ 438 (493)
T PRK15462 378 PLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS 438 (493)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999954 799999988888664
No 4
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.97 E-value=1.7e-29 Score=264.64 Aligned_cols=330 Identities=17% Similarity=0.258 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHH
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 113 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~ 113 (449)
..++++++++++|.|+++|+..++++|+||+++ ++|+++++++|+++|+|+++||.++|++.+++|||++|+++.+
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 346789999999999999999999999998876 2468899999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhccccccccC--CCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccch-hh
Q 013138 114 AMAIAVVSFFSGTRLFRNQK--PGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSF-FD 190 (449)
Q Consensus 114 ~~~l~~i~~~~~~~~~~~~~--~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-l~ 190 (449)
.++++++.+...++.+++.+ |++++ .|..+.+........+..... +.. ++.....+ +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~ 243 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCA----WLM-------------HNVEVANLVLI 243 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHH----HHH-------------hhhhHHHHHHH
Confidence 77777777766665554432 22222 233222211110000000000 000 00000000 00
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCCCceeCcccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~g~~i~~~~l 269 (449)
.........+ .++..+.+.++ +++.+..+.+++..+++|+++.|..+.+..+.. .++++.. |+.++++++
T Consensus 244 ~~~~i~~~~f------~~~~~~~~~~~-r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G~~i~~~~~ 314 (489)
T PRK10207 244 VLSIVVTIIF------FREAFKLDKTG-RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--GFSINPVSF 314 (489)
T ss_pred HHHHHHHHHH------HHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--ceEECHHHH
Confidence 0000000000 00001112233 344556777788899999999999887766664 4666655 899999999
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013138 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
+++|++.++++.|+.+++. +|+.+|+.++++..|+++|++++++|++.+...+... . +.+..+|+|
T Consensus 315 ~~~n~~~iii~~pl~~~l~----~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~-------~~~~~~s~~ 380 (489)
T PRK10207 315 QALNPFWVVVASPILAGIY----THLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---A-------DAQGLTSPW 380 (489)
T ss_pred HhHhHHHHHHHHHHHHHHH----HHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---c-------CCCCccCHH
Confidence 9999999999999988754 3443333348999999999999999988765433210 0 001237889
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++.++++|+||++.+|++++.+++.+|++++|.++|+|++.+++|+.+|..+.+.+.
T Consensus 381 ~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 381 FIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999887653
No 5
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.97 E-value=7.8e-31 Score=265.84 Aligned_cols=338 Identities=39% Similarity=0.672 Sum_probs=228.7
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013138 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
++.+.+.++++|+++++|.|++|||..++++|||+++++ ++|+++|+++|+++|+|+++++.+.+++.+++||++.|
T Consensus 29 ~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f 105 (372)
T PF00854_consen 29 SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGF 105 (372)
T ss_dssp -----CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhh
Confidence 346778999999999999999999999999999997742 35899999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHhcccccccc-CCCCCchhH-HHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013138 109 GIPAVAMAIAVVSFFSGTRLFRNQ-KPGGSPLTR-ICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~-~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+++.+.++++++.++.++++++++ ++.+.+..+ ...++..+.+++....+.....+.+..+.. . .+ .....
T Consensus 106 ~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~ 178 (372)
T PF00854_consen 106 GIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQY-S---ER---SIFGI 178 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHHH-C---CC---CCCCC
T ss_pred hHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhhh-h---hh---hhhhh
Confidence 999999999999999999988876 566666666 455556666666555531111111110000 0 00 00001
Q ss_pred chhhhhhhhhccccccccCCCCc-cccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCC-cee
Q 013138 187 SFFDKAAVEIQSDNIKESVNPWR-LCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS-FKI 264 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g-~~i 264 (449)
.+...+........ ..+. .++++.+++.|...+.++.+...+.++..+.+..+....|..++|+.++ + +++
T Consensus 179 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i 251 (372)
T PF00854_consen 179 IVFIRAAVIFFPEI-----FFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG--GLFGI 251 (372)
T ss_dssp CCHHHHHHHHCCCH-----HHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------
T ss_pred hhhccchhhhhhhh-----hhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc--ccccc
Confidence 11111111111100 0010 1345667788888888999988899999988888888888888887777 8 899
Q ss_pred CcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 013138 265 PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEM 344 (449)
Q Consensus 265 ~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~ 344 (449)
|+++++++|++.++++.|+.+++++|+.++ . +++++..|+.+|++++.+++.....++..|....+.+ .
T Consensus 252 p~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~---~~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-------~ 320 (372)
T PF00854_consen 252 PPAWLQSFNPIFIIIFIPILDRVVYPLLRR-G---IQPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-------G 320 (372)
T ss_dssp -SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH-----------T
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhHHhhh-c---ccchhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-------C
Confidence 999999999999999999999999998872 2 2389999999999999999999888877544333222 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013138 345 PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 345 ~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
..+.+|+++.+++.+++|.+..+.+.+.+++.+|++..+.++|+|+....
T Consensus 321 ~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 321 KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 35558888999999999999999999977777777777777777666543
No 6
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.96 E-value=6.1e-28 Score=252.29 Aligned_cols=327 Identities=20% Similarity=0.262 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++++.|+|.|+++|+..++++|++|++++ ++|+++++++|+..|+|.++||.++|++.+++||++.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 456788899999999999999999999999987642 13888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCch----hHH-H--H----HHHHHHHhccCcCCCCccchhhcccccccccCCccc
Q 013138 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPL----TRI-C--Q----VVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~----~~~-~--~----vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l 180 (449)
++.++++++.+...++.+++.++++++. .+. . . .+....+....... .
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------- 236 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHH-V-------------------- 236 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-c--------------------
Confidence 8777777777766666554332221111 010 0 0 00111110000000 0
Q ss_pred CCCCccchh-hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHH-HHHhhhccCCC
Q 013138 181 DHTKDFSFF-DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFV-LQGERMDTHVG 258 (449)
Q Consensus 181 ~~~~~~~~l-~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~-~~~~~~~~~~g 258 (449)
...+..... ..+........ ...+ +.+.++ .++..+++++++..+++|+++.|..+.+. .+.+++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~-~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 237 VIANILLMTVTLAVIIFFFRL---AFKP----RLDAVA-RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhc----cCCHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 000000000 00111100000 0000 112223 33455688899999999999999999765 44566788777
Q ss_pred CCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013138 259 NSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNY 338 (449)
Q Consensus 259 ~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~ 338 (449)
++++|+++++++|++.+++++|+...++.++.+| .++++...|+.+|+++.++++..+.+.... .
T Consensus 309 --~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~----- 373 (475)
T TIGR00924 309 --GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGMLFCGASFLTFAASIWF----A----- 373 (475)
T ss_pred --ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----c-----
Confidence 8999999999999999999999988754433332 223677889999999999999988765221 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 339 YDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 339 ~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
++...+|+||+++++++.++||++..|..++++++.+|+++||+++|++.+...+|+.+|+.+.+..
T Consensus 374 --~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 374 --DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred --CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123489999999999999999999999999999999999999999999999999999999988755
No 7
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.96 E-value=3.2e-27 Score=253.02 Aligned_cols=252 Identities=31% Similarity=0.620 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...++++++++++|.|+++||..++.+||++++++ ++|.++|+|+|+++|+|+++++++.+++.+++ +|+
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~ 161 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYP 161 (654)
T ss_pred HHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchH
Confidence 35578999999999999999999999999986542 34899999999999999999999999998543 699
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013138 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
++|.++++.++++++++..+++++++++|++++.....+++..+.+++..... ....
T Consensus 162 ~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~-----------------------~~~~ 218 (654)
T TIGR00926 162 LAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRS-----------------------EHWP 218 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCC-----------------------cccc
Confidence 99999999999999999888888877777777666777777766654322110 0011
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeC
Q 013138 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIP 265 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~ 265 (449)
..|+|.+... ..++.++|+|++++++++++..++||.++.|+.+.+..|+..++.+++ ++.+|
T Consensus 219 ~~~ld~a~~~---------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~--g~~ip 281 (654)
T TIGR00926 219 LHWLDYAKDK---------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--GFEIQ 281 (654)
T ss_pred hhHHHHhccc---------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC--CEecC
Confidence 3466654311 234668899999999999999999999999999999999999998888 89999
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013138 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRL 330 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~ 330 (449)
+++++++|++.++++.|++...++|.++|+..+ +++..|+++|+++++++++.+...|..++
T Consensus 282 ~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 282 PDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888888776443 78999999999999999999998887754
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.96 E-value=1.1e-27 Score=251.81 Aligned_cols=319 Identities=17% Similarity=0.267 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhH
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA 112 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~ 112 (449)
.+.+++++.++++|.|.+.|+..++++|++|+++ ++|+++++++|+..|+|+++||.++|++.+++|||+.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 4567788999999999999999999999998765 246779999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcccccccc--CCCCCchhHHHHHHH-------HHHHhcc-CcCCCCccchhhcccccccccCCcccCC
Q 013138 113 VAMAIAVVSFFSGTRLFRNQ--KPGGSPLTRICQVVA-------ASIRKHK-VELPADKSLLYETADAESNITGSRKLDH 182 (449)
Q Consensus 113 ~~~~l~~i~~~~~~~~~~~~--~~~~~~~~~~~~vl~-------~~~~~~~-l~~~~~~~~l~~~~~~~~~~~~~~~l~~ 182 (449)
+.++++++.+.+.++.++++ ++++++. |..+.+. ....... ...+.. .
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 245 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIATWLLHNQEI---------------------A 245 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHhcchH---------------------H
Confidence 87778777766665555443 2222222 2222111 1111000 000000 0
Q ss_pred CCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHh-hhccCCCCCC
Q 013138 183 TKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGE-RMDTHVGNSS 261 (449)
Q Consensus 183 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~-~~~~~~g~~g 261 (449)
.....+.......... .+.+..+. +|.++.+..+.+++..++||+.+.|.++.+..+.. ++|++.. |
T Consensus 246 ~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~--g 313 (500)
T PRK09584 246 RMALGVVALGIVVIFG---------KEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL--G 313 (500)
T ss_pred HHHHHHHHHHHHHHHH---------HHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--c
Confidence 0000000000000000 00011122 34444566677888999999999999999887764 4566666 8
Q ss_pred ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 013138 262 FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL 341 (449)
Q Consensus 262 ~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~ 341 (449)
+.+|+++++++|++.++++.|+.+.+ ++|+.+| .++..++.+|++++++|++.+...+.. . .
T Consensus 314 ~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~-------~ 375 (500)
T PRK09584 314 IAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----A-------N 375 (500)
T ss_pred eEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----c-------C
Confidence 99999999999999999999999875 4455444 678899999999999999988775432 0 1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 342 PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 342 ~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+...+|.||++++++++|+||++..|.+++++++.+|+++||+++|+|.+..++|+.+++.+.+.+
T Consensus 376 ~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~ 441 (500)
T PRK09584 376 DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLM 441 (500)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123588999999999999999999999999999999999999999999999999999998888755
No 9
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.80 E-value=9.7e-19 Score=183.97 Aligned_cols=321 Identities=13% Similarity=0.078 Sum_probs=187.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+.+.+.+++++ +|+++++++....++|..+||.++|++.++++|||.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 567889999999999999999999998988875443 399999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+.+..++.++......+..++ ++.+..|..+.+........+.+....... .+ .+.......+.
T Consensus 167 ~~~~~~~~~~l~~~~l~~~~~---~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~-~~------------~~~~~~~~~~~ 230 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQAG---RRDQPLNLGHALMLIVAILLLVYSAKTALK-GF------------LSLWVTSLTLL 230 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCCC---CCCCCCChHhHHHHHHHHHHHHHHHHhccc-cC------------CchHHHHHHHH
Confidence 887766655443332222111 111112222222111110000000000000 00 00000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
.+..... .+..+|.+..+|..+.+ .++...+.....................+.+++...| ++
T Consensus 231 ~~~~~l~------~f~~~e~~~~~p~~~~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g----------~s 293 (495)
T PRK14995 231 TGALLLG------LFIRTQLAASRPMIDMR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHG----------LS 293 (495)
T ss_pred HHHHHHH------HHHHHHhcCCCCCcCHH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CC
Confidence 0000000 00011112233333433 2222222222222222222222222233334444445 44
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
....+..+.+..+...+..++..++.+| .++++.+..|.++.+++++.+..... ..+.+.
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r---~g~~~~~~~g~~~~~~~~~~l~~~~~-----------------~~~~~~ 353 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSR---LGLRLVATGGMALSALSFYGLAMTDF-----------------STQQWQ 353 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHHhcC-----------------CCchHH
Confidence 5555555554444444444444444444 55566777888888888776654321 134555
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.....++.|+|.++..++....+.+.+|++++|.+++++++.+++|+.+|.++.+.+.+
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999997743
No 10
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.76 E-value=9.1e-18 Score=175.14 Aligned_cols=319 Identities=15% Similarity=0.162 Sum_probs=183.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|+|.|...|...+++.|.+|+++ |++++++++...++|..+||.++|++.++++|||.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 467888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..++..+......++ ++++.....|..+..........+....+. .+..+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~---------------------~~~~~~~~ 217 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGLSE---------------------GPERGWFD 217 (485)
T ss_pred hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHHhh---------------------CCCCCCCC
Confidence 876655554443332222 111111122333222222111100000000 00001111
Q ss_pred hhhhhhccccc---cccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013138 191 KAAVEIQSDNI---KESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~---~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
...+......+ ...+..++...+++..+.+ .++...+.......+.............+.+++...|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g--------- 287 (485)
T TIGR00711 218 SNEILILSITGLVAIIAFVVWELTDDNPLVDLR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLG--------- 287 (485)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 10000000000 0000000111122222222 2222222222222222222222222222333333334
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
++..+.+.......+...+..++..++.+| .++++.+.+|.+++++++.++.+.. ....+
T Consensus 288 -~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r---~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~ 347 (485)
T TIGR00711 288 -YTALQAGLHILPVGLAPMLSSPIAGRMGDK---IDPRKLVTIGLILYAVGFYWRAFTF----------------TPDTP 347 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHHHHHHhccC----------------CCCCC
Confidence 222233333332333333333333344444 5666777888888888887665310 11245
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++.+...++.|+|.++..++....+.+..|++++|.++|+.++.+++|+.+|+++.+.+.+
T Consensus 348 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 348 FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778999999999999989999999999999999999999999999999999887753
No 11
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.69 E-value=3.5e-15 Score=148.74 Aligned_cols=268 Identities=10% Similarity=0.069 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++.+.|++.+...|...+++.|.+|+++ |+++++++....++|.++||.+++++.++.+|++.|++.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67888999999999999999999999999999876 999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhccccccccCC-CCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 112 AVAMAIAVVSFFSGTRLFRNQKP-GGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
++..+++.+.....+.+ ++++ ++++.. ... .-+
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------------------------------------~~~---~~~ 198 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALS-----------------------------------------NAV---LRD 198 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccc-----------------------------------------hhH---HHH
Confidence 76555554433322211 1111 000000 000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc--
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS-- 268 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~-- 268 (449)
. .+..++.++-.+...+......+..........+ .+.+.+..++ .+...
T Consensus 199 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~ 250 (365)
T TIGR00900 199 T---------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVAL--FPYVQSKYLG-----RGSTHYG 250 (365)
T ss_pred H---------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHhC-----CchHHHH
Confidence 0 0000000000011111122222222222111111 1111111122 11111
Q ss_pred -ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 269 -LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 269 -l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+.....+..++..++.. ++.+| .+.++.+..+.++.++++..+.+.. .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~--------~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 300 (365)
T TIGR00900 251 WVLAAFGLGALLGALLLG--------LLGRY---FKRMALMTGAIFVIGLAILVVGLTP-------------------PN 300 (365)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHH---hchhHHHHHHHHHHHHHHHHHHhhc-------------------hh
Confidence 12222222222222222 22222 3444556666666666666555431 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+......++.|++.+...+...+.+.+.+|+++||+++|+.+...++|..+|+.+.+.+.+
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778999999999999999999999999999999999999999999999999887653
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.69 E-value=4.2e-15 Score=151.29 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.++++|++.+...|...+++.|++|+|+ |+++++++....++|..+||.+++++.+++|||+.|++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 467888999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013138 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 169 ~~~~~~l~~~ 178 (390)
T PRK03545 169 IGGGALITLL 178 (390)
T ss_pred HHHHHHHHHH
Confidence 8765554443
No 13
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.67 E-value=1.1e-15 Score=151.63 Aligned_cols=267 Identities=19% Similarity=0.262 Sum_probs=158.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++++++.|+|.+...|...+++.|.+|+++ |++++++.....++|.++||.+++++.++++||+.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 44588999999999999999999999999999987 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013138 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
++..++..+......+..+++++..++..+ +..+...+.+
T Consensus 158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLPEPPPPRERESPKES---------------------------------------ESKKPKPLKP- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC---STTTT--SSTTT---------------------------------------T--HHHCCCH-
T ss_pred cchhhhhhhhHhhhhhhccccccccccccc---------------------------------------cccccccccc-
Confidence 877766655322222111110000000000 0000000000
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce--eCcccc
Q 013138 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK--IPPASL 269 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~--i~~~~l 269 (449)
..++.++...+..+......+...+........ .++....+ .. ...+.+
T Consensus 198 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~---~~~~~~~~~~ 248 (352)
T PF07690_consen 198 -----------------------GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLP---LYLQEVLG---FSGPSQAGLL 248 (352)
T ss_dssp ------------------------CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHCCHHHH---CCTHHHHHHH
T ss_pred -----------------------ccccccccchhhhhhhhhhHHHHHHHHhhcccc---hhhhhccC---CCHHHHHHHH
Confidence 011111111111122222222222222222211 12222222 11 000011
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013138 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
..+..+...+..++..+ +.+| .+..++..+...+..++.+.+...... .+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~----l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 300 (352)
T PF07690_consen 249 FSIFGIVGIIGSLLAGR----LSDR-------FGRRRRLLIAILLLILGALGLLLLPFS-----------------SSPV 300 (352)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHH-------TTCHHHHHHHHHHHHHHHHHHCCSHHH-----------------CHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHH-------cCcHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHH
Confidence 12222222222223232 3333 444455556655555555555443221 3456
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHh
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSS 401 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~ 401 (449)
+.+...++.|++.++..+...+.+.+.+|++++|+++|+.+...++|..+||
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6777888899999999999999999999999999999999999999999886
No 14
>PRK10504 putative transporter; Provisional
Probab=99.67 E-value=5.4e-15 Score=154.18 Aligned_cols=319 Identities=11% Similarity=0.058 Sum_probs=176.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+++.|.+|+++ |.+++++.....++|..+||.++|++.++.+|||.|++
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~ 169 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI 169 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence 356778899999999999999999999999998775 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+.+...++.+......++.+. + .+..|..+..........+... +.+. + ..+ ...........
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~-~---~~r~~~~~~~~~~~~~~~~~~~-----~~~~---~--~~~---~~~~~~~~~~~ 232 (471)
T PRK10504 170 NIPVGIIGAIATLMLMPNYTM-Q---TRRFDLSGFLLLAVGMATLTLA-----LDGS---K--GLG---LSPLAIAGLVA 232 (471)
T ss_pred HHHHHHHHHHHHHHhCCCccc-c---CCCCChHHHHHHHHHHHHHHHH-----HhcC---C--cCC---cchHHHHHHHH
Confidence 887665555444333222111 1 1111222211111100000000 0000 0 000 00000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhH---hhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPI---WATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~---~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
........... .+...+++..+.| .++...+ .......+...... ....+.+++...|
T Consensus 233 ~~~~~~~~~~~------~~~~~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~g--------- 293 (471)
T PRK10504 233 VGVVALLLYLL------HARNNNRALFSLK-LFRTRTFSLGLAGSFAGRIGSGML---PFMTPVFLQIGLG--------- 293 (471)
T ss_pred HHHHHHHHHHH------HHhcCCCCccCHH-HhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcC---------
Confidence 00000000000 0000111111221 1111111 12222222222111 1111222222234
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
.+.......+....+......++..|+.+| +++++.+.+|.++.+++.+.+.+... ..+
T Consensus 294 -~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 352 (471)
T PRK10504 294 -FSPFHAGLMMIPMVLGSMGMKRIVVQVVNR---FGYRRVLVATTLGLALVSLLFMLVAL-----------------LGW 352 (471)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCchHHHHHHHHHHHHHHHHHHhccc-----------------ccc
Confidence 223333333333333232222334444444 56667777788877777666554311 123
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
.+++....++.|++.++..+..+..+.+.+|++.+|.++|++++.+.+|+.+|+.+.+.+....+
T Consensus 353 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 353 YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566788999999999999999999999999999999999999999999999997765443
No 15
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.62 E-value=2.3e-14 Score=146.75 Aligned_cols=263 Identities=13% Similarity=0.074 Sum_probs=161.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+|+ |++++++.+...++|..+||.++|++. +++|++.|++
T Consensus 97 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 356778899999999999999999999999999876 999999999999999999999999999 6899999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..++..+......++ .++... ..+ ..+ ++.
T Consensus 170 ~~~~~~~~~i~~~~~~~~---~~~~~~-~~~----------------------------------------~~~--~~~- 202 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPA---YKLSTV-RTP----------------------------------------VRE--GMT- 202 (400)
T ss_pred HHHHHHHHHHHHHHhCCc---cccccc-chh----------------------------------------hHH--HHH-
Confidence 876655544332222111 000000 000 000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
+..++.+ +... .+....++....+..... +.++.+. + +.....+++.
T Consensus 203 -----------------------~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~---p~~~~~~-~--~~~~~~g~l~ 249 (400)
T PRK11646 203 -----------------------RVLRDKR-FVTY---VLTLTGYYMLAVQVMLML---PIMVNDI-A--GSPSAVKWMY 249 (400)
T ss_pred -----------------------HHHcCch-HHHH---HHHHHHHHHHHHHHHHhh---hhhHHhh-c--CCchHHHHHH
Confidence 0001111 1111 111222222222221111 1122211 2 1001111122
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.++....+... ....+...| | .+..+++..++++.+++++.+... .+.++
T Consensus 250 ~~~~~~~~~~~----~~~~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~ 299 (400)
T PRK11646 250 AIEACLSLTLL----YPIARWSEK---R---FRLEHRLMAGLLIMSLSMFPIGMV--------------------SNLQQ 299 (400)
T ss_pred HHHHHHHHHHH----HHHHHHHHH---h---cchhHHHHHHHHHHHHHHHHHHHh--------------------hhHHH
Confidence 22222222111 111112222 2 344456778888888887666543 23445
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
.+...++.++|+++..|+..+.+.+.+|++++|+++|++++..++|..+|+.+.+.+.+.
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 555667889999999999999999999999999999999999999999999999988654
No 16
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.60 E-value=1.4e-13 Score=139.92 Aligned_cols=263 Identities=10% Similarity=0.005 Sum_probs=165.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
..+.+.+++.+.+++.+.+...|...++..+. +++ |++.++......++|.++||.++|++.+++|||+.|+
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 35678888999999999999999999987543 233 7889999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013138 110 IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
+......+.++.+ ...++. ++++++.. +..+ .+-
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~----------------------------------------~~~~--~~~ 196 (382)
T TIGR00902 163 ILTAGLAFMLIGF-LIKPTI---PPKDAIPE----------------------------------------DESQ--GDS 196 (382)
T ss_pred HHHHHHHHHHHHH-HcCCCC---CCCccccc----------------------------------------cccc--cch
Confidence 7654433222222 211110 11100000 0000 000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccc
Q 013138 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l 269 (449)
+...+.+.|+ ...+.+...+++....+..+.... +++. .| .+....
T Consensus 197 ----------------------~~~~~l~~~~---~~~~l~~~~l~~~~~~~~~~~~~~---~l~~-~g-----~s~~~~ 242 (382)
T TIGR00902 197 ----------------------AFIALLKNPM---NLRFLAAVCLIQGAHAAYYGFSAI---YWQA-AG-----ISASAT 242 (382)
T ss_pred ----------------------hHHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHH-CC-----CCHhHH
Confidence 0000011111 222222333334444444443222 2222 35 222222
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013138 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
..+. ....+.+.+...+.+|+.+| +++++.+.+|.++.++....+.+. .+.|
T Consensus 243 g~l~-----~~~~~~~i~~~~~~~~l~~r---~g~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~ 294 (382)
T TIGR00902 243 GLLW-----GIGVLAEIIIFAFSNKLFQN---CSARDLLLISAIACVGRWAIIGAI--------------------EAFP 294 (382)
T ss_pred HHHH-----HHHHHHHHHHHHHhHHHHhh---CCHHHHHHHHHHHHHHHHHHHHhH--------------------hhHH
Confidence 2222 22222222222334445454 778888899999999888877664 4566
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
.++...+++|++.++..+....++.+. |++.++.++++++ +..++|..+|+.+.+.+.+
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778999999999999999999988 9999999999987 5778999999999987754
No 17
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.58 E-value=3e-13 Score=138.23 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.++++|++.|...|...+++.|.+|+++ |+++.+++....++|.++||.+++++.++++||+.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 568889999999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHH
Q 013138 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 775544433
No 18
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.58 E-value=6.4e-14 Score=161.52 Aligned_cols=285 Identities=11% Similarity=-0.026 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|++.+.+.|...+++.|.+++++ |.+++++..++.++|.++||+++|++.+..+|++.|++
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467889999999999999999999999999999887 99999999999999999999999999999999999954
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.++..+++++..... ++.++.++ +.+.. . ....
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~-----------------------------------------~----~~~~ 212 (1140)
T PRK06814 180 LMGIAVLGWLASLFI-PKTGNAAP-DLKID-----------------------------------------R----NIIR 212 (1140)
T ss_pred HHHHHHHHHHHHhhC-CCCCCCCC-CCeec-----------------------------------------c----chHH
Confidence 444333333322221 11111000 00000 0 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhh---HhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLP---IWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~---~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
+.....+...+-.. +.+....++.+.....+.+ +.++...++ .-....+
T Consensus 213 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~g--~~~~~~g 264 (1140)
T PRK06814 213 -----------------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL---PLLAKETLG--GDENVAT 264 (1140)
T ss_pred -----------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHcC--CchHHHH
Confidence 00001111111111 1222222233322222222 222222233 0000112
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCCcc
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELI-RLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~ 346 (449)
++.....+..++...+..+ +.++ ......+.+|.++++++.+.+.+.... ............ =....
T Consensus 265 ~~~~~~~~g~~ig~~~~g~--------l~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 332 (1140)
T PRK06814 265 LFLAVFSVGVAVGSFLASK--------LSEG---RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV-FLSKR 332 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HhCC---ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh-hhccc
Confidence 2223333333333333332 2222 222234445555555544433321000 000000000000 00013
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.|++++..++.|++.++..++..+++++.+|++++|+++|++++..++|..+|+.+.+.+.
T Consensus 333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788889999999999999999999999999999999999999999999999888764
No 19
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.58 E-value=3e-13 Score=138.28 Aligned_cols=266 Identities=13% Similarity=0.038 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+.+.|.+++++ |.++.++.+...++|..+||.+++++.++.+|++.|++
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 356778899999999999999999999999998776 88899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCC-CCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPG-GSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
.++..++..+......+ +++++ +++.. +-
T Consensus 173 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------------------------------------------~~ 202 (406)
T PRK15402 173 FAALAALSFFGLWRAMP---ETAGRVGEKLS-----------------------------------------------LK 202 (406)
T ss_pred HHHHHHHHHHHHHHhCC---CCCcccccccc-----------------------------------------------HH
Confidence 77665555443322211 11110 00000 00
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhh---hhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013138 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA---TGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~---~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
+..++.+..++...++. .............+. .+.++....+ .
T Consensus 203 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~g-----~-- 248 (406)
T PRK15402 203 ------------------------ELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIAL---SPVILISGEQ-----L-- 248 (406)
T ss_pred ------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHhC-----C--
Confidence 00001111111111111 111111111111111 1111111223 1
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+............+...+..++..++.+| .+.++.+.+|.++.+++...+...... ...
T Consensus 249 ---~~~~~g~~~~~~~~~~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------~~~ 307 (406)
T PRK15402 249 ---SSYEYGLLQVPVFGALIAGNLTLARLTSR---RPLRSLIRMGLWPMVAGLLLAALATVI---------------SSH 307 (406)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHc---------------ccc
Confidence 11111111111111111112233344444 556667778888888887766654211 013
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.+|++...++.++|++...+..+..+... +++++|++++++++.+.+|..+|+++.+.+.
T Consensus 308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~ 368 (406)
T PRK15402 308 AYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAY 368 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566778888999999999998887776544 4599999999999999999999999888664
No 20
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.58 E-value=3.1e-13 Score=138.77 Aligned_cols=263 Identities=12% Similarity=0.064 Sum_probs=158.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+++.|.+|+++ |+++.++.++..++|..+||.++|++.+..+|+|.|++
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~ 181 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGL 181 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHH
Confidence 456778888999999999999999999999998776 89999999999999999999999999988899999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...+++.+...... +.+++..+.. ... .+...
T Consensus 182 ~~~~~~~~~~~~~~l~----~~~~~~~~~~-----------------------------------------~~~-~~~~~ 215 (417)
T PRK10489 182 AAAGTFITLLPLLRLP----ALPPPPQPRE-----------------------------------------HPL-RSLLA 215 (417)
T ss_pred HHHHHHHHHHHHHhCC----CCCCCCcccc-----------------------------------------cch-HHHHH
Confidence 7766555544332221 1111100000 000 00000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc--
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS-- 268 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~-- 268 (449)
.. +.+.+.+.. +.. .+... .+......... .+.+.+..++ .++..
T Consensus 216 ~~---------------------~~~~~~~~~-~~~--~~~~~-~~~~~~~~~~~---~p~~~~~~~g-----~~~~~~g 262 (417)
T PRK10489 216 GF---------------------RFLLASPVV-GGI--ALLGG-LLTMASAVRVL---YPALADEVWQ-----MGAAQIG 262 (417)
T ss_pred HH---------------------HHHHcChHH-HHH--HHHHH-HHHHHHhHHHh---hHHHHHhccC-----CChhHhH
Confidence 00 000000111 111 11111 11111111111 1222232233 22211
Q ss_pred -ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 269 -LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 269 -l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+.....+..++...+ ..+..+| .++.+.+..+.++.+++++.+... .+
T Consensus 263 ~~~~~~~~g~~ig~~~--------~~~l~~~---~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~ 311 (417)
T PRK10489 263 LLYAAVPLGAALGALT--------SGWLAHS---ARPGLLMLLSTLGSFLAVGLFGLM--------------------PM 311 (417)
T ss_pred HHHHHHHHHHHHHHHH--------HHHhhhc---cCcchHHHHHHHHHHHHHHHHHcc--------------------ch
Confidence 222222222222222 2222222 233345667777777776655432 24
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+......++.|++.+...+....++.+.+|++.||+++|+++...++|..+|+.+.+.+.+
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 312 WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 45556677888999988888888999999999999999999999999999999999997764
No 21
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.56 E-value=5.4e-13 Score=135.49 Aligned_cols=262 Identities=9% Similarity=0.037 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+++++.+...|...+++.|. .++ |+++++......++|..+||.++|++.+++|||..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 5678888899999999999999998888876 233 78888899999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...++..+.. ...+ +.+|++++.. + ......++
T Consensus 164 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~-------------------------------------~--~~~~~~~~-- 198 (382)
T PRK11128 164 LTAGVASMLLGQ-LLRP---TIMPQGESRQ-------------------------------------Q--ESAGWPAW-- 198 (382)
T ss_pred HHHHHHHHHHHH-HccC---CCCCcccccc-------------------------------------c--cccccchH--
Confidence 765444333322 2111 1111110000 0 00000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
..+.+.|.+ ..+.+...+....+....+.... +.++ .| .+.+...
T Consensus 199 -----------------------~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~---~~~~-~g-----~s~~~~g 243 (382)
T PRK11128 199 -----------------------KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAI---YWQA-AG-----YSASTIG 243 (382)
T ss_pred -----------------------HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHH---HHHH-CC-----CCHhHHH
Confidence 000111111 11112222222222222222221 2221 23 1111122
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.+.+...+ ...+...+ .+|+.+| ++.++.+.++.++.+++++.+... .+.|+
T Consensus 244 ~~~~~~~~-~~~~~~~~----~g~l~~r---~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~ 295 (382)
T PRK11128 244 YLWSLGVV-AEVLIFAF----SNRLFRR---WSARDLLLLSAICGVVRWGLMGST--------------------TALPW 295 (382)
T ss_pred HHHHHHHH-HHHHHHHH----HHHHHHH---CCHHHHHHHHHHHHHHHHHHHHhh--------------------hhHHH
Confidence 22221111 11112222 2233333 566677888888888877666543 35666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
.++..++.|+++++..+....+..+. |++.++.++++.+ +..++|..+|+.+.+.+.+
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999988887 5666789999886 6678888999998887754
No 22
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.55 E-value=4.6e-13 Score=136.81 Aligned_cols=262 Identities=15% Similarity=0.113 Sum_probs=150.1
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHH
Q 013138 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA 116 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~ 116 (449)
++.++++|+|.|...|...+++.|.+|+|| |.+++++.....++|.++||.++|++.+. .|+..|++.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 677889999999999999999999999886 99999999999999999999999999874 57777776665444
Q ss_pred HHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhhhhhh
Q 013138 117 IAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEI 196 (449)
Q Consensus 117 l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~ 196 (449)
++.+..... ++.++++++. + .+..+.. + ++.+..
T Consensus 165 ~~~~~~~~l-~~~~~~~~~~-~-~~~~~~~----~-----------------------------------~~~~~~---- 198 (393)
T PRK11195 165 LAALFNLFI-PRLGARRPGQ-S-WNPIALL----R-----------------------------------DFFHAC---- 198 (393)
T ss_pred HHHHHHhcC-CCCccccccc-C-CCHHHHH----H-----------------------------------HHHHHH----
Confidence 443322221 1111100000 0 0000000 0 000000
Q ss_pred ccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccccchhHHH
Q 013138 197 QSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLS 276 (449)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~~ln~~~ 276 (449)
+.+.+.+.. +. .......+|.+.......+. .+++..++ ++....+.
T Consensus 199 -----------------~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~lg----------~s~~~~G~ 245 (393)
T PRK11195 199 -----------------RVLWRDKLG-RF--SLAGTTLFWGAGATLRFLVL---AWAPVALG----------ITLNQPAY 245 (393)
T ss_pred -----------------HHHHhCchh-HH--HHHHHHHHHHHHHHHHHHHH---HHHHHHcC----------CChhHHHH
Confidence 000000101 11 11112223333322221111 12222233 12222333
Q ss_pred HHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHH
Q 013138 277 VIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYF 356 (449)
Q Consensus 277 ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~i 356 (449)
+.....+...+...+..|+.++ .+.++.+..|. ++++....+... .+.|+.+...+
T Consensus 246 ~~~~~~~g~i~g~~~~~~l~~~---~~~~~~~~~g~-~~~~~~~~~~~~--------------------~~~~~~~~~~~ 301 (393)
T PRK11195 246 LQAVVAIGIAVGAGAAARLVTL---ETVLRVLPAGI-LMGLVVLLMALQ--------------------HSLLPAYPLLI 301 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CcccchHHHHH-HHHHHHHHHHHH--------------------hHHHHHHHHHH
Confidence 3333333333333333444333 34445566664 334433333221 34566677778
Q ss_pred HHHHHHHHHhhhhHHHHhhhcChhh-HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 357 LIGCAEVFTFIGQLEFFYEQAPDAM-RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 357 l~glge~l~~p~~~~~i~~~aP~~~-~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.|++.++..++.++.+++..|++. +|+++++.++.+++|..++.++.+.+.
T Consensus 302 ~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 302 LIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988777765 799999999999999999999988664
No 23
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.54 E-value=3.6e-13 Score=135.00 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++.++.+|++.|++
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 153 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 367889999999999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 154 ~~~~~~~~~~~ 164 (399)
T TIGR00893 154 EGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHH
Confidence 77655444443
No 24
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.54 E-value=1e-12 Score=133.84 Aligned_cols=253 Identities=11% Similarity=0.049 Sum_probs=154.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+...+++.++++|+|.+...|...+.+.|.+++|+ |+++++++....++|..+||.+++++.+++||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678899999999999999999999999998877 999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013138 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
.+..++..+ ..++ .++.++++.+.. ++.
T Consensus 185 ~~~~~~~~~---~~~~-~~~~~~~~~~~~----------------------------------------------~~~-- 212 (399)
T PRK05122 185 MLLALLGLL---LARP-RPAVPPVKGERL----------------------------------------------PFR-- 212 (399)
T ss_pred HHHHHHHHH---HHhc-CCCCCCCCccch----------------------------------------------hHH--
Confidence 654332222 1111 111111000000 000
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccccc
Q 013138 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSI 271 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~~ 271 (449)
+..|...+.... ...+...+....+.... +... .+ .. ..+....
T Consensus 213 -------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~-~~---~~-~~~~~~~ 256 (399)
T PRK05122 213 -------------------------RVLGRVWPYGMG---LALASIGFGTIATFITL---YYAA-RG---WD-GAALALT 256 (399)
T ss_pred -------------------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHH-cc---cc-cchHHHH
Confidence 001111111100 00111111111111111 1111 12 10 0011111
Q ss_pred hhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHH
Q 013138 272 FDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQ 351 (449)
Q Consensus 272 ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 351 (449)
+..+..++..++... +.+| .++++.+.++.++.++++..+... .+.+..
T Consensus 257 ~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 305 (399)
T PRK05122 257 LFGVAFVGARLLFGN----LINR-------LGGLRVAIVSLLVEILGLLLLWLA--------------------PSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHHHH----HHHH-------hccHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHH
Confidence 222222222222222 2333 455566777777777777666543 344556
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++..++.|++.+...|.....+.+..|++.||+++|+++....+|..+++.+.+.+.+
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 363 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS 363 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777899999999999888888899999999999999999999999999888886653
No 25
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.53 E-value=6.1e-13 Score=140.20 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=169.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+++.+++..++.|++.+...|.-++++-+..|+|+ ..++.++..+..|++-++||.+||.+....|-.+.|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999887 89999999999999999999999999988999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
+++.+++.++.+...++... ++..+.....+-+...+
T Consensus 175 nalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~---------------------------------------- 211 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPPP---PSSLPRERFFSALREGL---------------------------------------- 211 (524)
T ss_pred HHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHH----------------------------------------
Confidence 99887776655443332211 11111000000000000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
+.+...+.+...+ ....++.+........++. .....++ ..+..+.
T Consensus 212 -----------------------ryv~~~~~l~~~l---~~~~~~~l~~~a~~aLlPl---~a~~~l~-----~~a~~yG 257 (524)
T PF05977_consen 212 -----------------------RYVRSSPPLRSVL---LRSFLFNLFASAVWALLPL---FARDVLG-----GGASGYG 257 (524)
T ss_pred -----------------------HHHhcchHHHHHH---HHHHHHHHhhhHHHHhhhH---HHHHHhC-----CcHHHHH
Confidence 0000111111111 1111121111111111211 1122223 1111222
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.+.+.. -+ ..+..-++ ..++.++ .+..+.+..+.++.+++++.+++. .+.|.
T Consensus 258 ll~a~~-gv-Gai~Gal~---~~~l~~~---~~~~~lv~~~~~~~a~~~~~lal~--------------------~~~~~ 309 (524)
T PF05977_consen 258 LLLAAF-GV-GAILGALL---LPRLRRR---LSSRRLVLLASLLFALALLLLALS--------------------PSFWL 309 (524)
T ss_pred HHHHHH-HH-HHHHHHHH---HHHhhcc---cCcchhhHHHHHHHHHHHHHHhcc--------------------hHHHH
Confidence 222111 11 11112222 2223222 455556777888888877777664 45677
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..+..++.|++.....++.++.+++.+|++++|++++++.+....+..+|..+.+.+.+
T Consensus 310 ~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999998888887754
No 26
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.53 E-value=1.2e-12 Score=131.84 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+++ |++++++.+...++|..+||.+++++.++.+|++.|++
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 356778899999999999999999999999999776 99999999999999999999999999998999999998
Q ss_pred hHHHHHHHHHHH
Q 013138 111 PAVAMAIAVVSF 122 (449)
Q Consensus 111 ~~~~~~l~~i~~ 122 (449)
.+...++..+..
T Consensus 165 ~~~~~~~~~~~~ 176 (385)
T TIGR00710 165 LSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHHHHH
Confidence 776555544443
No 27
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.3e-12 Score=129.38 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=167.0
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-..+++.++++|++.|+..|.+.+...++..|..|+++ |+++.++......++-.+|..+|.++.|.+|||+.
T Consensus 96 alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 96 ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 334789999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccc
Q 013138 108 FGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFS 187 (449)
Q Consensus 108 F~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 187 (449)
|++-.+..+++++..+...+ +++.++..+
T Consensus 170 F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~------------------------------------------------- 198 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP--PSEISGSLP------------------------------------------------- 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CccCCCCCC-------------------------------------------------
Confidence 99766655555544333222 011110000
Q ss_pred hhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc
Q 013138 188 FFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA 267 (449)
Q Consensus 188 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~ 267 (449)
.++++..+.+|...++.....-.+.+...+..|.+....+...-|
T Consensus 199 --------------------------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g--------- 243 (394)
T COG2814 199 --------------------------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG--------- 243 (394)
T ss_pred --------------------------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccC---------
Confidence 000111112222223333333333344444444444444444434
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
++.-..-.+++..-+...+...+..|+.+| ++++.+....+++++.++.+.+.. .+
T Consensus 244 -~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr----~~~~~l~~~~~l~a~~~l~l~~~~-------------------~~ 299 (394)
T COG2814 244 -FSVSAVSLVLLAFGIAGFIGNLLGGRLADR----GPRRALIAALLLLALALLALTFTG-------------------AS 299 (394)
T ss_pred -CCHhHHHHHHHHHHHHHHHHHHHHhhhccc----cchhHHHHHHHHHHHHHHHHHHhc-------------------ch
Confidence 222222223333333333334455665543 555666667788888887766642 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC--hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--DAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP--~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+..+...++.|++..... .....+.++ ++.+..+++++....|+|..+|.++.+.+.+
T Consensus 300 ~~~~~~~~~~wg~a~~~~~---~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~ 360 (394)
T COG2814 300 PALALALLFLWGFAFSPAL---QGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD 360 (394)
T ss_pred HHHHHHHHHHHHHHhhhhh---hHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444433 344444444 6788999999999999999999999997764
No 28
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.51 E-value=1.1e-12 Score=134.00 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+++ |++++++++...++|..++|.+++++.+..+|++.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 466788899999999999999999999999998876 99999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 013138 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.+...++.
T Consensus 175 ~~~~~~~~ 182 (406)
T PRK11551 175 GGVGPLLL 182 (406)
T ss_pred HHHHHHHH
Confidence 76543333
No 29
>TIGR00895 2A0115 benzoate transport.
Probab=99.50 E-value=6.4e-12 Score=126.67 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=72.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.|.+|+++ |++++++.....++|..+||.+++++.+..+|++.|++
T Consensus 103 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 456778899999999999999999999999998776 99999999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 013138 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.+...++
T Consensus 177 ~~~~~~~ 183 (398)
T TIGR00895 177 GGIAPLL 183 (398)
T ss_pred hhhHHHH
Confidence 7543333
No 30
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.50 E-value=1.2e-12 Score=133.45 Aligned_cols=267 Identities=13% Similarity=0.122 Sum_probs=155.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+ ..|...+.+.|.+++++ |+++.+++....++|..+||.+++++.+..+|++.|++
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457788899999999866 46888889999998776 89999999999999999999999999998999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
..+..++..+......++.. ++..++... .+-+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------------~~~~ 210 (408)
T PRK09874 178 TASVLFLCFLVTLFCIRENF--QPVSKKEML---------------------------------------------HMRE 210 (408)
T ss_pred HHHHHHHHHHHHHHHhccCc--ccccchhhh---------------------------------------------HHHH
Confidence 87665555443322222110 010000000 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
.. . ..++.+.. + .+......+..........+.. +.....+ . .. ...
T Consensus 211 ~~-----~----------------~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~-~~--~~~ 257 (408)
T PRK09874 211 VV-----T----------------SLKNPKLV-L--SLFVTTLIIQVATGSIAPILTL---YVRELAG---N-VS--NIA 257 (408)
T ss_pred HH-----H----------------hCcCCchH-H--HHHHHHHHHHHHHHHHHHHHHH---HHHHHhc---c-ch--HHH
Confidence 00 0 00000100 0 0111111111111111111111 1111101 0 00 000
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
.....+.....+...+..+...++.+| .++++.+.++.++.+++++.+... .+.+.
T Consensus 258 -~~~g~~~~~~~l~~~~~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 313 (408)
T PRK09874 258 -FISGMIASVPGVAALLSAPRLGKLGDR---IGPEKILITALIFSVLLLIPMSFV--------------------QTPLQ 313 (408)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHh--------------------ccHHH
Confidence 000111111111222222233334443 555566677777666666554432 24455
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++.|++++...|...+.+.+.+|++.+|+.+++++..+.+|..+|+.+.+.+.
T Consensus 314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~ 371 (408)
T PRK09874 314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS 371 (408)
T ss_pred HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence 6667788999999999999999999999999999999999999999999999988775
No 31
>PRK12382 putative transporter; Provisional
Probab=99.50 E-value=1.8e-12 Score=131.92 Aligned_cols=253 Identities=9% Similarity=0.084 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|+|.+...|...+.+.|.+|+|+ |+++++++....++|..+||.+++++.+++||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 467888999999999999999999999999999877 99999999999999999999999999998999998876
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
..+..++.. ...+ +.++.+++++... ++.
T Consensus 184 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~----------------------------------------------~~~- 212 (392)
T PRK12382 184 TMVLPLLAW---AFNG-TVRKVPAHAGERP----------------------------------------------SLW- 212 (392)
T ss_pred HHHHHHHHH---HHHH-hccCCCCCcccCc----------------------------------------------hHH-
Confidence 544322222 1111 1111111000000 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHH-hhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRL-LPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~-~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l 269 (449)
+..|...+. .........+... .. + .+.++.. .+ .. ..+..
T Consensus 213 --------------------------~~~~~~~~~~~~~~l~~~~~~~~----~~-~--~~~~~~~-~~---~~-~~~~~ 254 (392)
T PRK12382 213 --------------------------SVVGLIWKPGLGLALQGVGFAVI----GT-F--VSLYFAS-KG---WA-MAGFT 254 (392)
T ss_pred --------------------------HHHHHHHHhHHHHHHHHHHHhHH----HH-H--HHHHHHh-cC---Cc-hhHHH
Confidence 000000000 0000011111111 01 1 0111111 12 10 01111
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013138 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
........++..++.. ++.+| +++++.+.++..+.+++++.+... .+.+
T Consensus 255 ~~~~~~~~~~~~~~~g--------~l~~r---~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~ 303 (392)
T PRK12382 255 LTAFGGAFVLMRVLFG--------WMPDR---FGGVKVAIVSLLVETVGLLLLWLA--------------------PTAW 303 (392)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHh---cCCCeehHHHHHHHHHHHHHHHHc--------------------ccHH
Confidence 1111222222222222 23333 455556777888888877665542 2445
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+..+..++.+++++...|.....+.+..|+++||+++|+++....+|+.+|+.+.+.+.+
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677889999999999988899999999999999999999999999999999987754
No 32
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.49 E-value=2.2e-12 Score=129.77 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
..+++++.++|+|.|...|...+++.|.+++++ |++..++.....++|.++|+.+++.+. +.++||
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 457889999999999999999999999999887 999999999999999999999877653 357999
Q ss_pred hhhhHhHHHHHHHH
Q 013138 106 WGFGIPAVAMAIAV 119 (449)
Q Consensus 106 ~iF~i~~~~~~l~~ 119 (449)
+.|++.++..+++.
T Consensus 171 ~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 171 IPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998776554443
No 33
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=3.5e-12 Score=125.86 Aligned_cols=241 Identities=20% Similarity=0.263 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.+.|++.+...|...+++.|.+|+|+ |++++++.+...++|..+||.+++++.++.+|++.|++
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356788999999999999999999999999999877 99999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...+++.+...... +..
T Consensus 159 ~~~~~~~~~~~~~~~~-----------~~~-------------------------------------------------- 177 (352)
T cd06174 159 LAILGLLLALLLLFLL-----------RLL-------------------------------------------------- 177 (352)
T ss_pred HHHHHHHHHHHHHHHH-----------HHH--------------------------------------------------
Confidence 8766555554432211 000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLS 270 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~ 270 (449)
..+.+................. ...+...+ .-....+.+.
T Consensus 178 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~ 217 (352)
T cd06174 178 -----------------------------------LLLALAFFLLSFGYYGLLTYLP---LYLQEVLG--LSAAEAGLLL 217 (352)
T ss_pred -----------------------------------HHHHHHHHHHHhHHHHHHHHHH---HHHHHhcC--CCHHHHHHHH
Confidence 0000000000011000000000 00111111 0000111233
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM 349 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (449)
.......++..++... +.+|. +.++ .+.++.++..++++.+... .+.+
T Consensus 218 ~~~~~~~~i~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~ 266 (352)
T cd06174 218 SLFGLGGILGALLGGL----LSDRL-------GRRRLLLLIGLLLAALGLLLLALA--------------------PSLA 266 (352)
T ss_pred HHHHHHHHHHHHHHHH----HHHHH-------HhhhHHHHHHHHHHHHHHHHHHHh--------------------ccHH
Confidence 3334444444444444 34443 3334 6778888888888777654 2466
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
......++.+++++...+...+.+.+..|+++|++.+|+.+..+++|..+++.+.+.+.+
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999999999999999999999999999999987753
No 34
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.48 E-value=4.5e-12 Score=127.41 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhh--HHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF--FNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~--~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
.+.+.+++.+.+++.+.+...|...+++.+..++++ |.++ .++.+...++|..+||.+++++.++++||+.|
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f 158 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF 158 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence 456777778888888888888999998888876654 4433 67888889999999999999999999999999
Q ss_pred hHhHHHHHHHHHH
Q 013138 109 GIPAVAMAIAVVS 121 (449)
Q Consensus 109 ~i~~~~~~l~~i~ 121 (449)
++.++..++..+.
T Consensus 159 ~~~~~~~~~~~~~ 171 (375)
T TIGR00899 159 LTAALAFVLCGVL 171 (375)
T ss_pred HHHHHHHHHHHHH
Confidence 9887765554443
No 35
>PRK10054 putative transporter; Provisional
Probab=99.48 E-value=1.9e-12 Score=132.42 Aligned_cols=261 Identities=13% Similarity=0.101 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++.+.+.+.+.+.+.|...+...|.+++++ |++++++.+...|+|.++||.+++++.+ .+|++.|++.
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 45566667777788878888999999999998776 9999999999999999999999999885 7999999987
Q ss_pred HHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhh
Q 013138 112 AVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDK 191 (449)
Q Consensus 112 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~ 191 (449)
++..+++++......++ +++++++... + .| +.
T Consensus 168 ~~~~~i~~i~~~~~~~~---~~~~~~~~~~------------------------------------------~--~~-~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQR---SEKAIATETG------------------------------------------S--VW-SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhc---cccccccchh------------------------------------------h--hh-hh
Confidence 76666654433221111 1111100000 0 00 00
Q ss_pred hhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCcc---c
Q 013138 192 AAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPA---S 268 (449)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~---~ 268 (449)
..+.+.|. ...+......+...+....+.........+ +.+ .+.+ .
T Consensus 200 ----------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~g~ 248 (395)
T PRK10054 200 ----------------------SVLLQDKA---LLWFTCSGFLASFVSGAFASCISQYVMVVA-DSD-----FAEKVVAV 248 (395)
T ss_pred ----------------------hhhccCce---ehHHHHHHHHHHHHHHHhhhhHHHHHHHhc-ccc-----hHHHHHHH
Confidence 00000011 111111111111111111111111100111 112 1111 1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+...+....+... +...|+.+| .++++.+..|+++.++++..+.+.. .+.
T Consensus 249 ~~~~~~~~~~~~~--------~~~g~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~ 298 (395)
T PRK10054 249 VLPVNAAMVVSLQ--------YSVGRRLNA---ANIRPLMTAGTLCFVIGLVGFIFSG-------------------NSL 298 (395)
T ss_pred HHHhhhhheeeeh--------hHHHHHHcc---CCchhHHHHHHHHHHHHHHHHHHcc-------------------hHH
Confidence 1222222212211 123333333 4566677788888888876665421 244
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.+.+..++.++|++...|...+.+.+.+|++++|++.+..+ ...+|..+|+.+.+.+.+
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 445566789999999999999999999999999999998766 455889999998887764
No 36
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.48 E-value=6.9e-12 Score=129.00 Aligned_cols=85 Identities=15% Similarity=0.117 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.+...+...+.+.|.+++++ |.++++++....++|+.+||.+++++.++.|||+.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 467889999999999999877888888999999876 89999999999999999999999999988999999998
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.++..+++.+.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 87765555543
No 37
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.47 E-value=4e-12 Score=128.87 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...++++++++|+|.|. .+...+.+.+++|+++ |++++++.....++|.++++++++++.+++|||+.|++
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~ 149 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP 149 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4678899999999999996 4556666789999776 99999999999999999999999999999999999998
Q ss_pred hHHHHHHH
Q 013138 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.+...++.
T Consensus 150 ~~~l~~~~ 157 (368)
T TIGR00903 150 IAAVAAAG 157 (368)
T ss_pred HHHHHHHH
Confidence 55443333
No 38
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.47 E-value=5.6e-12 Score=126.46 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--------
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-------- 103 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-------- 103 (449)
+.+.+++...+.+++.+...|...+++.|.+|+|+ |+++.++...+.++|.++|+.+++++..+.+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44555666667788889999999999999998876 9999999999999999999999999988888
Q ss_pred cchhhhHhHHHHHHHHHH
Q 013138 104 WGWGFGIPAVAMAIAVVS 121 (449)
Q Consensus 104 w~~iF~i~~~~~~l~~i~ 121 (449)
||+.|++.++..+++.+.
T Consensus 156 wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLV 173 (356)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 999999888766555544
No 39
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.46 E-value=5.8e-12 Score=128.59 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~ 109 (449)
.+.+.++++++++|+|.|...+...+++.|++| ++ |+++++++....+.|..+|+.+++++.++. +||+.|.
T Consensus 95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456788999999999999999999999999987 55 899999999999999999999999998875 8999887
Q ss_pred HhHHH
Q 013138 110 IPAVA 114 (449)
Q Consensus 110 i~~~~ 114 (449)
+.+..
T Consensus 168 ~~~~~ 172 (393)
T PRK09705 168 WWALP 172 (393)
T ss_pred HHHHH
Confidence 54443
No 40
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.45 E-value=1.5e-11 Score=124.89 Aligned_cols=84 Identities=7% Similarity=0.092 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.|.+++++ |.++++++....++|..+||.+++++.+..+||+.|++
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 467889999999999999999999999999988765 88999999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013138 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.+...++..+
T Consensus 163 ~~~~~~~~~~ 172 (382)
T PRK10091 163 IAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHH
Confidence 8765544443
No 41
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.44 E-value=5.9e-12 Score=125.89 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHh-hhhheeccccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS-SVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp-~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++++.+.|++.|...|...+++.|.+|+++ |++++++.....++|..+|| .+++.+.+..+|++.|+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 367888999999999999999999999999999876 99999999999999999999 67788888899999999
Q ss_pred HhHHHHHHHHH
Q 013138 110 IPAVAMAIAVV 120 (449)
Q Consensus 110 i~~~~~~l~~i 120 (449)
+.+...++..+
T Consensus 155 ~~~~~~~~~~~ 165 (379)
T TIGR00881 155 VPGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHHH
Confidence 87755444333
No 42
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.44 E-value=7.9e-12 Score=144.16 Aligned_cols=269 Identities=13% Similarity=0.061 Sum_probs=153.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc--------c
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------E 102 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------~ 102 (449)
.+.+.+++.++++|++.|...|...+++.|.+++++ |+++++++....++|.++||.+++++.+. +
T Consensus 101 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~ 174 (1146)
T PRK08633 101 GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI 174 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 357888999999999999999999999999999887 99999999999999999999999999875 2
Q ss_pred -ccchhhhHhHHHH-HHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCccc
Q 013138 103 -GWGWGFGIPAVAM-AIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKL 180 (449)
Q Consensus 103 -gw~~iF~i~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l 180 (449)
+|+|.+.+.+... +++++.. +..+ +.++...... +.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~-------------------~~------------------- 212 (1146)
T PRK08633 175 LGRIAPAGLVLLAVAVLGLIFA-YRLP---KVPAAAPEVF-------------------DK------------------- 212 (1146)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-hcCc---CCCCCCcccc-------------------cc-------------------
Confidence 3444443333222 2222222 1111 1111100000 00
Q ss_pred CCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHH---HhhHhhhhHHHHHHhhccchhHHHHHhhhccCC
Q 013138 181 DHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVR---LLPIWATGIIFSAVYSQMSSLFVLQGERMDTHV 257 (449)
Q Consensus 181 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~---~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~ 257 (449)
.... ..- +..+..+.+++ +....+....++.......+.+. .++...+
T Consensus 213 ~~~~--~~~------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 263 (1146)
T PRK08633 213 KKYL--FPK------------------------LLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFP---AYAKEVL 263 (1146)
T ss_pred cccc--cHH------------------------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHh
Confidence 0000 000 00000111111 11111222222322222222211 1222222
Q ss_pred CCCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013138 258 GNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHN 337 (449)
Q Consensus 258 g~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~ 337 (449)
| .+.. ...+.+.....+...+...+..++.+| .+....+.+|.++++++.+++...
T Consensus 264 g-----~s~~----~~~g~~~~~~~ig~~~g~~~~g~l~~r---~~~~~~~~~~~~~~~~~~~~~~~~------------ 319 (1146)
T PRK08633 264 G-----LDNT----FQVQYLLAASAIGIGIGSLLAGRLSGR---HIELGLVPLGALGLALSLFLLPTA------------ 319 (1146)
T ss_pred C-----CCcH----HHHHHHHHHHHHHHHHHHHHHHHHhCC---ceEccchhHHHHHHHHHHHHHHHh------------
Confidence 3 1111 011111111111111112223334333 444556667777777777666553
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 338 YYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 338 ~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+.+++++..++.|++.++..++..+++.+.+|++.||+++|+.++..++|..+++.+...+.
T Consensus 320 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 --------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred --------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777889999999999999999999999999999999999999999987776665543
No 43
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.43 E-value=7.8e-12 Score=126.63 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--cchhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--WGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g--w~~iF 108 (449)
.+.+.+++.+++.|+|.+...|...+++.|.+|+++ |+++++++....++|..+||.+++.+.+..+ ||+.|
T Consensus 98 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 98 PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 467788999999999999999999999999999876 9999999999999999999999999987766 99999
Q ss_pred hHhHHHHHHH
Q 013138 109 GIPAVAMAIA 118 (449)
Q Consensus 109 ~i~~~~~~l~ 118 (449)
++.+...++.
T Consensus 172 ~~~~~~~~~~ 181 (405)
T TIGR00891 172 FISILPIIFA 181 (405)
T ss_pred HHHHHHHHHH
Confidence 8766544333
No 44
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.42 E-value=3.3e-11 Score=122.28 Aligned_cols=69 Identities=7% Similarity=0.040 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccc
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWG 105 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~ 105 (449)
.+.+.+++.+++.|++.|...|...+.+.+..++++ |+++++++....++|..+||.+++++.+...|+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 467888999999999999999998888888888765 899999999999999999999999998764333
No 45
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.41 E-value=1.7e-11 Score=127.80 Aligned_cols=83 Identities=13% Similarity=0.205 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i 110 (449)
+.+.+++.++++|++.|...|....++.+++|+++ |+++++++....++|..+||.+++++.+.. +||+.|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 35678899999999999999999999999999887 999999999999999999999999999884 99999998
Q ss_pred hHHHHHHHHH
Q 013138 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 204 ~~~~~~~~~~ 213 (465)
T TIGR00894 204 FGIVGCAWSL 213 (465)
T ss_pred hhHHHHHHHH
Confidence 7765444433
No 46
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.41 E-value=1.2e-11 Score=123.54 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...+...+.+.+.+| |+ |+++.+++....++|.++++.+.+.+.+..+||+.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 467888899999999999988888888888886 44 89999999999999998877677777777899999998
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.++..++..+.
T Consensus 162 ~~~~~~~~~~~ 172 (377)
T TIGR00890 162 MGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHHHH
Confidence 77655444433
No 47
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.41 E-value=2.3e-11 Score=122.63 Aligned_cols=84 Identities=17% Similarity=0.244 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++.+.+.|++.+...+...+++.|.+++++ |++++++.+...++|..+||.+++++.++.+|++.|++.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 56678899999999999999999999999998776 999999999999999999999999999989999999987
Q ss_pred HHHHHHHHHH
Q 013138 112 AVAMAIAVVS 121 (449)
Q Consensus 112 ~~~~~l~~i~ 121 (449)
+...++..+.
T Consensus 152 ~~~~~~~~~~ 161 (377)
T PRK11102 152 ALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHH
Confidence 7655554443
No 48
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.40 E-value=1.4e-11 Score=128.37 Aligned_cols=86 Identities=9% Similarity=-0.008 Sum_probs=69.0
Q ss_pred hHHHHHHH-HHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVA-LYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~-l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++. +++.|+|.|...+...+++.+.++ ++ |+++.++.+...++|..++|.+++++.+.+|||+.|++
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~ 178 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLI 178 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 45555543 578899999876777788889885 44 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 013138 111 PAVAMAIAVVSFFS 124 (449)
Q Consensus 111 ~~~~~~l~~i~~~~ 124 (449)
.++..+++.+..++
T Consensus 179 ~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 179 LGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766555544333
No 49
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.39 E-value=2.4e-11 Score=124.77 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|+|.|...|...+++.|.+|+++ |+++.+++..+.++|.+++|.+++++.+.++||+.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 467889999999999999999999999999999886 99999999999999999999999999999999999998
Q ss_pred hHHH
Q 013138 111 PAVA 114 (449)
Q Consensus 111 ~~~~ 114 (449)
.+..
T Consensus 178 ~~~~ 181 (426)
T PRK12307 178 GLLP 181 (426)
T ss_pred HHHH
Confidence 6543
No 50
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.38 E-value=3.1e-11 Score=122.88 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...+...++..|.+++++ |.++.+++.....+|..+||.+++++.++.+||+.|++
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 356788999999999999888988899999988766 88999999999999999999999999998999999998
Q ss_pred hHHHHHH
Q 013138 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.++..++
T Consensus 168 ~~~~~~~ 174 (394)
T PRK11652 168 LLLLGAG 174 (394)
T ss_pred HHHHHHH
Confidence 7654443
No 51
>PRK11043 putative transporter; Provisional
Probab=99.38 E-value=6.7e-11 Score=120.70 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+.++|+|.+...+...+++.|.+++++ +.+.++......++|..+||.+++++.++++||+.|++
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 356778899999999999888888999999998776 78899999999999999999999999999999999998
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 166 ~~~~~~~~~~~ 176 (401)
T PRK11043 166 LFAITLLLILP 176 (401)
T ss_pred HHHHHHHHHHH
Confidence 77655544433
No 52
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.38 E-value=8.5e-11 Score=121.13 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh---heeccccccchh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL---VWIQDNEGWGWG 107 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg---g~L~~~~gw~~i 107 (449)
.+.+.+++++.+.|+|.|...+...+++.|.+|+++ |++++++++...++|.++||.++ +++.+..+||+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 345678999999999999999999999999999887 99999999999999999999999 888788999999
Q ss_pred hhHhHHHHHHHHHH
Q 013138 108 FGIPAVAMAIAVVS 121 (449)
Q Consensus 108 F~i~~~~~~l~~i~ 121 (449)
|++.++..++.++.
T Consensus 199 f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 199 LGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99866554444433
No 53
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.36 E-value=1.6e-10 Score=118.19 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHH-HHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA-LIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~-~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++.+.+.|+|.+...+...+.+.+.+++++ |+++.+++....++|. .+||.+++++.+.+||+..+|.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 46677888999999998888888888889998876 9999999999999996 6899999999988897766664
Q ss_pred hH
Q 013138 111 PA 112 (449)
Q Consensus 111 ~~ 112 (449)
..
T Consensus 178 ~~ 179 (402)
T TIGR00897 178 AL 179 (402)
T ss_pred HH
Confidence 43
No 54
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.36 E-value=1e-10 Score=123.06 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
.++++.++++|+|.|+..|...+++.+++|+++ |+++.++.....++|..+|+.+..++. .++|||
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 358999999999999999999999999999887 999999999888889888886655442 258999
Q ss_pred hhhhHhHHHHH
Q 013138 106 WGFGIPAVAMA 116 (449)
Q Consensus 106 ~iF~i~~~~~~ 116 (449)
+.|++.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998765433
No 55
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.36 E-value=1e-10 Score=118.87 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.++|++.+...+...+++.|.+++++ |.+++++.+...++|..+||.+++++.+..+|++.|++
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~ 162 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYT 162 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHH
Confidence 356678889999999999999999999999998876 99999999999999999999999999888999999998
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 163 ~~~~~~i~~~~ 173 (392)
T PRK10473 163 MAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHH
Confidence 77655444443
No 56
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.34 E-value=1.9e-10 Score=118.30 Aligned_cols=81 Identities=15% Similarity=0.289 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc------cccc
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD------NEGW 104 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~------~~gw 104 (449)
.+.+.+++.+++.|++.|...|...+++.+.+|+++ |+++++++....++|..+||.+++++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 456788999999999999999999999999999876 9999999999999999999999998864 4699
Q ss_pred chhhhHhHHHHHH
Q 013138 105 GWGFGIPAVAMAI 117 (449)
Q Consensus 105 ~~iF~i~~~~~~l 117 (449)
|+.|++.++..++
T Consensus 168 r~~f~~~~~~~l~ 180 (412)
T TIGR02332 168 QWLFLLEGFPSVI 180 (412)
T ss_pred hHHHHHHHHHHHH
Confidence 9999987655443
No 57
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.6e-11 Score=127.46 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~i 110 (449)
+.+.+++.|+++|++.|...|++..+..++.|++| |++..++.+....+|.+++..++|+|.++ +||+++|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 44567899999999999999999999999999998 99999999999999999999999999998 999999999
Q ss_pred hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhh
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFD 190 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~ 190 (449)
.+...++..+++.+... +.|.++|...- +| + ..+.
T Consensus 201 ~g~~g~i~~~~w~~~~~----d~P~~h~~is~--------~E-----------l----------------------~~I~ 235 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYS----DSPSKHPNISE--------KE-----------L----------------------KYIE 235 (466)
T ss_pred HHHHHHHHHHHHHHHhc----CCcccCCCCCH--------HH-----------H----------------------HHHH
Confidence 88655443333322211 22333322100 00 0 0000
Q ss_pred hhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCcee-Ccccc
Q 013138 191 KAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKI-PPASL 269 (449)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i-~~~~l 269 (449)
..+. ... .++..-...|.+++-.++|+..+..+.-...........+.+++..++ +.+ ..+++
T Consensus 236 ~~k~--~~~-----------~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~---f~v~~~G~~ 299 (466)
T KOG2532|consen 236 KGKS--EAH-----------VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG---FDVRETGFL 299 (466)
T ss_pred hccc--ccc-----------cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC---CChhhhhHH
Confidence 0000 000 000000123445666777776666666555555666677777876665 333 35667
Q ss_pred cchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 270 SIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM--GIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 270 ~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i--~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+++.-+...+...+...+.+.+..| .-. .....|+ .+++...++.++.+.+... -+
T Consensus 300 salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~------------------~~ 357 (466)
T KOG2532|consen 300 SALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSD------------------EH 357 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCC------------------Cc
Confidence 7787777777777777776666554 211 1222333 4555555555555555410 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
. +........+++.......+........-++..+..+|+.+...++...+++++++.+.+
T Consensus 358 ~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 358 R-LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred c-hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 1 223333333344444445555444445356789999999999999999999999997763
No 58
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.34 E-value=1.5e-10 Score=119.82 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.|...|...+++.+++++++ |++++++++...++|..+||.+++++.++++||+.|++
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 456777888888999999999999999999999876 99999999999999999999999999999999999998
Q ss_pred hHHHHHH
Q 013138 111 PAVAMAI 117 (449)
Q Consensus 111 ~~~~~~l 117 (449)
.++..++
T Consensus 183 ~~i~~~~ 189 (434)
T PRK11663 183 AGIIAIV 189 (434)
T ss_pred HHHHHHH
Confidence 7654443
No 59
>PRK09952 shikimate transporter; Provisional
Probab=99.34 E-value=2.2e-10 Score=118.75 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccc
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWG 105 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~ 105 (449)
..+++.++++|+|.|...|...+++.+.+|+++ |++..+.......+|.++++.+.+++. +++|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 368889999999999999999999999999887 899999999999999999887776664 357999
Q ss_pred hhhhHhHHHH
Q 013138 106 WGFGIPAVAM 115 (449)
Q Consensus 106 ~iF~i~~~~~ 115 (449)
+.|++.++..
T Consensus 200 ~~f~~~~~~~ 209 (438)
T PRK09952 200 IPFLFSIVLV 209 (438)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 60
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.34 E-value=1.4e-10 Score=114.75 Aligned_cols=79 Identities=14% Similarity=-0.016 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+++.++++.+++|.|.+..++..++++++.-++|+ +++.+++......+|.++||.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 578999999999999999999999999999999887 88999999999999999999999987632
Q ss_pred -------cccchhhhHhHHHH
Q 013138 102 -------EGWGWGFGIPAVAM 115 (449)
Q Consensus 102 -------~gw~~iF~i~~~~~ 115 (449)
.+|++.|++.+...
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~ 102 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGAL 102 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 47899998554443
No 61
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.2e-11 Score=124.35 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
..+|++.+.+.+.|+|.+.+.|..+++++|.|++++ |+++++++|+++++|..+|.+++..+.+..+ |||.|+
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 578999999999999999999999999999999987 9999999999999999999999999998777 999999
Q ss_pred HhHHHHHHHHHHHHhc
Q 013138 110 IPAVAMAIAVVSFFSG 125 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~ 125 (449)
..+++.++..++..+.
T Consensus 193 ~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLF 208 (493)
T ss_pred eehHHHHHHHHHHHhh
Confidence 8887666655554443
No 62
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.32 E-value=2.3e-10 Score=118.27 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccc
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEG 103 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~g 103 (449)
+...+++.++++|+|.|...|...+++.|.+|+++ |+++.++.+...+.|.++++.+++.+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578999999999999999999999999999887 999999999999999999988766554 2589
Q ss_pred cchhhhHhHHHHH
Q 013138 104 WGWGFGIPAVAMA 116 (449)
Q Consensus 104 w~~iF~i~~~~~~ 116 (449)
||+.|++.++..+
T Consensus 197 Wr~~F~i~~~~~l 209 (432)
T PRK10406 197 WRIPFALGAVLAV 209 (432)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998665443
No 63
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.31 E-value=2.4e-10 Score=114.60 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc--cchhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG--WGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g--w~~iF 108 (449)
.+.+.+++++++.|+|.|...+...+++.|.++ ++ |+++++++....++|..+|+.+++++.++.+ ||+.|
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f 157 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL 157 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 356777899999999999988888888888886 44 8999999999999999999999999887653 99988
Q ss_pred hHhHHHHH
Q 013138 109 GIPAVAMA 116 (449)
Q Consensus 109 ~i~~~~~~ 116 (449)
.+.+...+
T Consensus 158 ~~~~~~~~ 165 (355)
T TIGR00896 158 AWWALPAL 165 (355)
T ss_pred HHHHHHHH
Confidence 86554333
No 64
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.30 E-value=1.8e-10 Score=117.53 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhh--hhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS--SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~--~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
+.+.+++...+.+...+...|...+++.|..++++ |. ...++.....++|.++||.+++++.+++|||+.|+
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~ 177 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence 45554443333333344678888888888776554 43 34478889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHH
Q 013138 110 IPAVAMAIAVVSF 122 (449)
Q Consensus 110 i~~~~~~l~~i~~ 122 (449)
+.++..++..+..
T Consensus 178 ~~~~~~~~~~~~~ 190 (393)
T PRK15011 178 SAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 8776555544433
No 65
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.30 E-value=3.7e-10 Score=117.82 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------ccc
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNE 102 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~ 102 (449)
...+.++++++++|+|.|...|...++++|++|+++ |++++++......+|.++++.+++++. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345678899999999999999999999999999887 999999999999999999988766442 457
Q ss_pred ccchhhhHhHHHHHHHHH
Q 013138 103 GWGWGFGIPAVAMAIAVV 120 (449)
Q Consensus 103 gw~~iF~i~~~~~~l~~i 120 (449)
+||+.|++.++..++..+
T Consensus 192 gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 192 GWRYMFASEAIPALLFLM 209 (479)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 999999987665554443
No 66
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.30 E-value=1.2e-10 Score=121.63 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---ccchh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE---GWGWG 107 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~---gw~~i 107 (449)
.+.+.+++.+.++|++.|...|...+++.+++|+++ |+++++++....++|.++|+.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 568889999999999999999999999999999987 999999999999999999999988776643 69998
Q ss_pred hhHhHHHHHH
Q 013138 108 FGIPAVAMAI 117 (449)
Q Consensus 108 F~i~~~~~~l 117 (449)
|.+.+...++
T Consensus 194 f~~~g~~~~~ 203 (467)
T PRK09556 194 FIFPSIIALI 203 (467)
T ss_pred HHHHHHHHHH
Confidence 8876654443
No 67
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.30 E-value=3e-10 Score=118.19 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHH-HHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGA-LIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~-~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++.+++.|++.|...|...+.+.+++|+++ |++++++++...++|. +++|+++..+....+||+.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 46677888899999999999988889999998876 9999999999999986 5567654444344599999998
Q ss_pred hHHHHHHH
Q 013138 111 PAVAMAIA 118 (449)
Q Consensus 111 ~~~~~~l~ 118 (449)
.++..++.
T Consensus 193 ~~~~~~~~ 200 (452)
T PRK11273 193 PAFAAILV 200 (452)
T ss_pred HHHHHHHH
Confidence 77655443
No 68
>PRK03699 putative transporter; Provisional
Probab=99.29 E-value=2.4e-10 Score=116.65 Aligned_cols=83 Identities=10% Similarity=0.203 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-cccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-DNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-~~~gw~~iF~ 109 (449)
.+.+.+++.+.++|++.|...+...+.+.+.+|+++ |+++++..+...++|..++|.+.+++. ++.+||+.|+
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 456788899999999999999999999999998766 899999999999999999999988875 4579999999
Q ss_pred HhHHHHHHHH
Q 013138 110 IPAVAMAIAV 119 (449)
Q Consensus 110 i~~~~~~l~~ 119 (449)
+.+...++..
T Consensus 167 ~~~~~~~~~~ 176 (394)
T PRK03699 167 CIGLVYVAIF 176 (394)
T ss_pred HHHHHHHHHH
Confidence 7665444433
No 69
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.29 E-value=4.4e-10 Score=118.30 Aligned_cols=85 Identities=12% Similarity=0.231 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc-ccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD-NEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~-~~gw~~iF~ 109 (449)
.+.+.+.+.+.+.+++.+...+...++..|.+|+++ |+++.++...+.++|.++|+.+++++.+ ..|||..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 467778888999999999999999999999999876 9999999999999999999999999998 579999999
Q ss_pred HhHHHHHHHHHH
Q 013138 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+.+...++..+.
T Consensus 179 i~a~l~ll~~l~ 190 (491)
T PRK11010 179 LMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHH
Confidence 877655555443
No 70
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.28 E-value=5e-10 Score=115.35 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
++.++.+.+|.++++++++.+.+.+ .+.+..++..++.+++.+...+...+.+.+.+|
T Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 284 FGRKILFAGGILLMVLGYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 5556677888888888877665431 234455666788899999999998888888766
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
++.+|.++|++++...+|..+|+.+.+.+.+..+
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999998865443
No 71
>PRK15075 citrate-proton symporter; Provisional
Probab=99.28 E-value=4.5e-10 Score=116.20 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec--------cccccch
Q 013138 35 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ--------DNEGWGW 106 (449)
Q Consensus 35 ~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~--------~~~gw~~ 106 (449)
.++++++++|+|.|...|+..+++.|.+|+++ |+++.+++....++|..+|+.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 46899999999999999999999999999887 999999999999999888888887763 4689999
Q ss_pred hhhHhHH
Q 013138 107 GFGIPAV 113 (449)
Q Consensus 107 iF~i~~~ 113 (449)
.|++.+.
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9997543
No 72
>TIGR00898 2A0119 cation transport protein.
Probab=99.27 E-value=7.2e-10 Score=116.67 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+++.+++.+++.|++.|...|...+++.|.+|+++ |+++.++......+|.+++|.+++++.+ ||+.|++
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 467889999999999999999999999999999887 9999999999999999999999877653 9999998
Q ss_pred hHHHHHHHHHHH
Q 013138 111 PAVAMAIAVVSF 122 (449)
Q Consensus 111 ~~~~~~l~~i~~ 122 (449)
.++..++..+..
T Consensus 249 ~~i~~~~~~~~~ 260 (505)
T TIGR00898 249 VSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHHH
Confidence 775555444433
No 73
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.27 E-value=1.6e-10 Score=121.11 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++++.+.|++.+...+...+++.|.+++++ |++++++++...++|..+||.+++++.++++||+.|++
T Consensus 106 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~ 179 (496)
T PRK03893 106 PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI 179 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 467788999999999999999999999999999876 99999999999999999999999999999999999997
Q ss_pred hHHH
Q 013138 111 PAVA 114 (449)
Q Consensus 111 ~~~~ 114 (449)
.++.
T Consensus 180 ~~~~ 183 (496)
T PRK03893 180 GILP 183 (496)
T ss_pred HHHH
Confidence 5543
No 74
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.27 E-value=1.2e-09 Score=111.85 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=70.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~ 109 (449)
.+.+.+++..++.++..+...|...+++.|.+|+++ |+++.++..++.++|..+|+.+++++.+. .|||..|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 356666666677788899999999999999999887 99999999999999999999999999885 59999999
Q ss_pred HhHHHHHHHHH
Q 013138 110 IPAVAMAIAVV 120 (449)
Q Consensus 110 i~~~~~~l~~i 120 (449)
+.++..++..+
T Consensus 166 i~a~~~l~~~l 176 (402)
T PRK11902 166 LMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHH
Confidence 87765544443
No 75
>PRK10133 L-fucose transporter; Provisional
Probab=99.23 E-value=6.6e-10 Score=115.28 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 99 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~ 99 (449)
..+.+.++++++++|+|.|...+..++++.|..++++ |.+.++++.....+|..+||.+++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998755443 666788999999999999999887543
No 76
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.23 E-value=3.4e-10 Score=113.45 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc----------c
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD----------N 101 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~----------~ 101 (449)
+.+.++++++++|++.+.. +...+++.|.+|+++ |+++.+++....++|..+|+.+++.+.+ +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 6778889999999997765 557889999999876 9999999998889999888888877654 3
Q ss_pred cccchhhhH
Q 013138 102 EGWGWGFGI 110 (449)
Q Consensus 102 ~gw~~iF~i 110 (449)
.+|||.|++
T Consensus 163 ~~w~~~~~~ 171 (366)
T TIGR00886 163 LAWGWAFVI 171 (366)
T ss_pred ccccchhHH
Confidence 489999943
No 77
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.22 E-value=9.7e-10 Score=113.83 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee-ccccccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI-QDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L-~~~~gw~~iF~i 110 (449)
+.+.+++.+++.|++.|...|.....+.|.+|+++ |++++++++...++|..++|.+.+++ ..+.+||+.|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45667788899999999999999999999999887 99999999999999999998887754 445799999998
Q ss_pred hHHHHHHHHH
Q 013138 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
.++..++..+
T Consensus 191 ~~~~~~i~~~ 200 (438)
T TIGR00712 191 PAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 78
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.21 E-value=2.5e-10 Score=114.09 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=169.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc---cch
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG---WGW 106 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g---w~~ 106 (449)
..+.+.+++.-++.|+++|.+ ....+.+..+||||+ ++.+++++. .-|+|..+...+++++....+ |+.
T Consensus 102 ~~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~ 173 (417)
T COG2223 102 YPSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRN 173 (417)
T ss_pred CCchHHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHH
Confidence 345578888889999998875 566778999999997 899999999 999999999999999999999 999
Q ss_pred hhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013138 107 GFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 107 iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+-.+..+.++++.+.+++..+.-++.++..++..
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------------------------------- 207 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------------------------------- 207 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhccccccc----------------------------------------------
Confidence 8888888888877776665544333222111100
Q ss_pred chhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013138 187 SFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
+ .+.|...+....|..+..|......+-..-...+.+.+++++
T Consensus 208 ----------------------------~-~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg-------- 250 (417)
T COG2223 208 ----------------------------P-AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG-------- 250 (417)
T ss_pred ----------------------------h-hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 0 111222222223333444433333332222333445566667
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++...++.....-|+.+.+..|+..++.+| .+..+.+.+.++.++++...+...... .....
T Consensus 251 --~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR---~Gg~rv~~~~f~~~~~~~~~l~~~~~~-------------~~~~~ 312 (417)
T COG2223 251 --LSPVTAGLIAFLFPLIGALARPLGGWLSDR---IGGRRVTLAVFVGMALAAALLSLFLTG-------------FGHGG 312 (417)
T ss_pred --CChhhHHHHHHHHHHHHHHHHhccchhhhh---ccchhHHHHHHHHHHHHHHHHHccccc-------------cccCc
Confidence 566666677777788888888888888888 898888899999888888877764211 01113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh---hhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD---AMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~---~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.+..+...+.+.+..++-+ .-+++..|. ++.|.+.|+...+.++|+..-+...+...+
T Consensus 313 ~~~~~~~~~l~l~~~~G~Gn----Gsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 313 SFVVFVAVFLALFVFAGLGN----GSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred chHHHHHHHHHHHHHhccCc----chheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 33333333333333332222 333444443 266777777777777777666666665543
No 79
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.21 E-value=6e-10 Score=118.02 Aligned_cols=321 Identities=12% Similarity=0.020 Sum_probs=176.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
..+...+..+..+.|+|.|... .....++|..|.+. |...+.+..+..-+...+||.++..+..+-+|||.|+
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~ 200 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY 200 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence 3667779999999999987765 45666899998776 7777777776666666678888877777789999999
Q ss_pred HhHHHHHHHHHHHHhccc--cccccCCCC-C-----chhHHHHHHHHHHHhccCcCCCCccc--hhhcccccccccCCcc
Q 013138 110 IPAVAMAIAVVSFFSGTR--LFRNQKPGG-S-----PLTRICQVVAASIRKHKVELPADKSL--LYETADAESNITGSRK 179 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~--~~~~~~~~~-~-----~~~~~~~vl~~~~~~~~l~~~~~~~~--l~~~~~~~~~~~~~~~ 179 (449)
++++...++++..++..+ ..++.+.++ . +..|+.+.++..........+..=.+ .++|
T Consensus 201 ~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W------------ 268 (599)
T PF06609_consen 201 IFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPW------------ 268 (599)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCC------------
Confidence 988766666544332222 111111111 1 22477777766654443333332111 1233
Q ss_pred cCCCCccchhhhhhhhhccccccccCCCCccc--cchhHHHHHHHHHHhhHhhhhHHHHH---HhhccchhHHHHHhhhc
Q 013138 180 LDHTKDFSFFDKAAVEIQSDNIKESVNPWRLC--TVTQVEELKAIVRLLPIWATGIIFSA---VYSQMSSLFVLQGERMD 254 (449)
Q Consensus 180 l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~v~~~k~~~~~~~~~~~~~~f~~---~~~q~~~~~~~~~~~~~ 254 (449)
.++.++.-+......... +..||.+ .++|....|.+.....+...+++.+. .+......|..+...+.
T Consensus 269 -~Sa~VIa~lviG~~~Lv~------F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf 341 (599)
T PF06609_consen 269 -KSAHVIAPLVIGFVLLVA------FVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVF 341 (599)
T ss_pred -CCccchhhHHHHHHHHHH------HHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233333322221111111 1223322 12444333322211112222222222 23333333444443332
Q ss_pred cCCCCCCcee-CcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013138 255 THVGNSSFKI-PPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 255 ~~~g~~g~~i-~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
.. . .... ..++..........+...+... +.++. + ..++.+.+|.+++.+++..++...
T Consensus 342 ~~-d--~~~~~~~~~~s~~~~fg~~~g~~i~g~----l~~~i-r-----~~Kw~li~~~~~~ta~~Gama~~~------- 401 (599)
T PF06609_consen 342 GS-D--PISITEIGWISSPVGFGSCAGAVILGL----LFSKI-R-----HIKWQLIFGSVLMTAFCGAMAAVR------- 401 (599)
T ss_pred cC-C--CcccceeehhhhhHHHHHHHHHHHHHH----HHHHc-c-----chhHHHHHHHHHHHHHHHHHHHcc-------
Confidence 11 0 0000 1233444444444443333333 23332 1 234566788888777666655432
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 334 REHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 334 ~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+++ .+.+ +...++.++|.+....+....++-.+|++..|.++|+....|.+|+.+|.++...+
T Consensus 402 --------~~n-~~~~--i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 402 --------PDN-KNAA--IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred --------CCC-cchH--HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 1222 34456778888888888888888999999999999999999999999999988755
No 80
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.18 E-value=1.8e-09 Score=111.83 Aligned_cols=87 Identities=17% Similarity=0.032 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-----c-----
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-----D----- 100 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-----~----- 100 (449)
.+++.+++.+++.|+| |...+.....+.+++|+++ |+++++++....|+|..+++++++.+. .
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5778899999999998 5577889999999999887 999999998778888877766665433 2
Q ss_pred --------ccccchhhhHhHHHHHHHHHHHHh
Q 013138 101 --------NEGWGWGFGIPAVAMAIAVVSFFS 124 (449)
Q Consensus 101 --------~~gw~~iF~i~~~~~~l~~i~~~~ 124 (449)
..+|+.++++-.+..+++.+..++
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234666666655555455444433
No 81
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.16 E-value=7.4e-10 Score=113.91 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=70.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++...+.+. .+.++++...++.+++.....+...+++.+..|++.
T Consensus 289 ~g~~~~~~~~~~l~~~~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 348 (420)
T PRK09528 289 IGAKNALLLAGTIMAVRIIGSGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL 348 (420)
T ss_pred hCcchhhHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 455556778888888877766553 356677777889999998888888899999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++...+. +++..++|..+|+.+.+.+.+
T Consensus 349 ~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 349 SATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred eeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 9987765 788899999999999887754
No 82
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.16 E-value=5.6e-09 Score=106.24 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHH
Q 013138 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA 116 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~ 116 (449)
.......++..+...+...++..+..++++ ++.+.+...+...+|.++|+.+.+++.+++|||..|++.+...+
T Consensus 101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~ 174 (390)
T TIGR02718 101 VGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPL 174 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 334444556666677777777666666554 67778888888899999999999999999999999998776655
Q ss_pred HHHHH
Q 013138 117 IAVVS 121 (449)
Q Consensus 117 l~~i~ 121 (449)
+..+.
T Consensus 175 ~~~~~ 179 (390)
T TIGR02718 175 ASLVC 179 (390)
T ss_pred HHHHH
Confidence 54444
No 83
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.14 E-value=8.1e-09 Score=112.98 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+.+.+++++++.|+|.|+..|...+++.+.+|++. |++.++++.+...+|.++++.++.++..+
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~ 326 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGS 326 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccc
Confidence 457888999999999999999999999999999876 99999999999999999999877655432
Q ss_pred ----cccchhhhHhHHHHHHHHHH
Q 013138 102 ----EGWGWGFGIPAVAMAIAVVS 121 (449)
Q Consensus 102 ----~gw~~iF~i~~~~~~l~~i~ 121 (449)
.+||+.|++.++..++.++.
T Consensus 327 ~~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 327 AYQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH
Confidence 36899888776555444443
No 84
>PRK09848 glucuronide transporter; Provisional
Probab=99.12 E-value=9.5e-09 Score=106.71 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChh-
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA- 380 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~- 380 (449)
++.++.+.+|.++.+++++.+.+.. ..+.|++....++.++|+++..+...+...+.+|.+
T Consensus 291 ~g~~~~~~~g~~~~~i~~~~~~~~~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 291 IGKKNTFLIGALLGTCGYLLFFWVS------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 6677788889988888887665421 135666677788899999999999999999988865
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 381 ------MRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 381 ------~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
.+|.++|++++.+.+|..+|+.+.+.+....+
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46999999999999999999999987765544
No 85
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.10 E-value=3.7e-09 Score=114.48 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---------
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE--------- 102 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~--------- 102 (449)
....++++++++|+|.+...|...+++.|.+|+++ |++.+++++....+|+++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35678899999999999999999999999999887 999999999999999999999999987643
Q ss_pred -------------ccchhhhHhHHHHHHHHHHHH
Q 013138 103 -------------GWGWGFGIPAVAMAIAVVSFF 123 (449)
Q Consensus 103 -------------gw~~iF~i~~~~~~l~~i~~~ 123 (449)
+|+..|++.++..++..+.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266778876655554444333
No 86
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.08 E-value=7e-09 Score=105.73 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.++++...... .+.+++++..++.+++.........++..+..|++.
T Consensus 281 ~g~~~~l~~~~~l~~l~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T TIGR00882 281 IGAKNALLIAGTIMSVRIIGSSFA--------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL 340 (396)
T ss_pred hccchhHHHHHHHHHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 455566778888888777654432 466677778889999988877777788888889998
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+++..+. ++....+|+.+++.+.+.+.+
T Consensus 341 ~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 341 SATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred EEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8887766 678999999999998887754
No 87
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.07 E-value=1.2e-08 Score=104.96 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---------
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------- 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~--------- 101 (449)
.+.+.+++++++.|+|.|...+..++.+.+..|+++ |++..++.....++|..+||.+++.+...
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 467888999999999999999999999999888776 78889999999999999999999877432
Q ss_pred -----------------cccchhhhHhHHHHHHH
Q 013138 102 -----------------EGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 102 -----------------~gw~~iF~i~~~~~~l~ 118 (449)
.+||+.|++.+...++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~ 199 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV 199 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999998766544433
No 88
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.06 E-value=2.2e-09 Score=112.27 Aligned_cols=290 Identities=14% Similarity=0.076 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhH
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA 112 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~ 112 (449)
.....+.+++.+++.+...+...++..|..+ |++ +.++...++.|...++|.++|+.++|++.++++|+.+|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3444457889999999999999999999998 442 124557778888899999999999999999999999999877
Q ss_pred HHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhh
Q 013138 113 VAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKA 192 (449)
Q Consensus 113 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a 192 (449)
...++..+...+.+++.....|+..... .. .+. .........
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~----~~~--------------------------------~~~~~~~~~- 237 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIGTYL-EM----NMA--------------------------------LLTLGVLAN- 237 (468)
T ss_pred HHHHHHHHHHHhcccccccccccccccc-hh----hhh--------------------------------hhhhhHHHH-
Confidence 6655553332222111000011100000 00 000 000000000
Q ss_pred hhhhccccccccCCCCccccchhHHHHHHHHHHhhHhh--hhHHH-HHHhhccchh-HHHHHhhhccCCCCCCceeCccc
Q 013138 193 AVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWA--TGIIF-SAVYSQMSSL-FVLQGERMDTHVGNSSFKIPPAS 268 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~--~~~~f-~~~~~q~~~~-~~~~~~~~~~~~g~~g~~i~~~~ 268 (449)
..+.+.+.+..++...++. ..+.+ +......... +..+ ...+| .++
T Consensus 238 -------------------~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~----~~~lG-----~s~-- 287 (468)
T TIGR00788 238 -------------------VKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCAT----TQCLP-----GGP-- 287 (468)
T ss_pred -------------------HHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEE----cccCC-----CCc--
Confidence 0000111111111111111 11111 1111111111 1111 11223 222
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
-+.+.+.....+...+...+.+|+.+| ++.++.+.++.++.+++.+........ -+ ...+ -.+.
T Consensus 288 ---~~~G~~~~~~~v~~i~g~~~~~~~~~~---~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~--~~~g-------i~~~ 351 (468)
T TIGR00788 288 ---SFSGMSKVVGNLGSLCGVGGYDRFLKT---FPYRLLFGVTTLLYTLSSLFDLILVKR-WN--LAFG-------ISDE 351 (468)
T ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHhCceeeeec-cc--cccC-------CCCe
Confidence 222222222222222222234444444 777788888888887777543221100 00 0000 0123
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
++.....++.+++.++.+.+.+.++.+.+|++.+|+..|+.+..+++|+.+|+.+.+.+.+.
T Consensus 352 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 352 VFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred eeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999999999999999999999999999999999888877653
No 89
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.06 E-value=3.4e-09 Score=106.05 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=79.7
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh--heeccccccch
Q 013138 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL--VWIQDNEGWGW 106 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg--g~L~~~~gw~~ 106 (449)
...+.+.+.+-..+.|.-+|.-.|.....++++|+.+| |++..++|..+-|+|+.+.|++. +++..+++||.
T Consensus 113 fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~ 186 (448)
T COG2271 113 FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRA 186 (448)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhH
Confidence 34588899999999999999999999999999999988 99999999999999999999999 99999999999
Q ss_pred hhhHhHHHH-HHHHHHHHhc
Q 013138 107 GFGIPAVAM-AIAVVSFFSG 125 (449)
Q Consensus 107 iF~i~~~~~-~l~~i~~~~~ 125 (449)
.|++++++. +++++.+...
T Consensus 187 ~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 187 AFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 999998544 4444444433
No 90
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.9e-09 Score=106.74 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-+.+++.++++|.++|+|.+....+..++++|.||+|+ +|++++++.--.+.+|.++||..||.+.+..|++..
T Consensus 154 afg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP 228 (464)
T KOG3764|consen 154 AFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP 228 (464)
T ss_pred HHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence 345688899999999999999999999999999999887 499999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHh
Q 013138 108 FGIPAVAMAIAVVSFFS 124 (449)
Q Consensus 108 F~i~~~~~~l~~i~~~~ 124 (449)
|+|.+.++++-..+-++
T Consensus 229 FlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99988777765554333
No 91
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.03 E-value=6e-09 Score=109.27 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc---------c
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD---------N 101 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~---------~ 101 (449)
.+.+.+++.+++.|+|.+...+ ....+.+++|+++ |++++++.....++|..+|+.+.+.+.. .
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 3566778889999999987654 5567889999876 9999999998888998888777765532 2
Q ss_pred cccchhhhHhHHHHHHHHH
Q 013138 102 EGWGWGFGIPAVAMAIAVV 120 (449)
Q Consensus 102 ~gw~~iF~i~~~~~~l~~i 120 (449)
.|||+.|++.++..++..+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5899999987765544443
No 92
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.99 E-value=7.6e-08 Score=101.54 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc------------
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD------------ 100 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~------------ 100 (449)
.+.++++++++|+|.|+..|....++.+.+|+++ |+++.++.+...++|.++|+.++.++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5779999999999999999999999999999987 9999999999999999999988875431
Q ss_pred -----------ccccchhhhHhHHHHHHH
Q 013138 101 -----------NEGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 101 -----------~~gw~~iF~i~~~~~~l~ 118 (449)
..+||+.|.+.++..++.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHH
Confidence 247999998766544333
No 93
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.98 E-value=9.7e-09 Score=101.27 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
..+.....+.++......+-....+.+..|++.||...|+.....+++.++||++.+....++-
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~ 416 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQ 416 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEec
Confidence 3567777889999999999999999999999999999999999999999999999987765444
No 94
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.93 E-value=1.5e-07 Score=98.06 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee--cccc--------
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI--QDNE-------- 102 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L--~~~~-------- 102 (449)
.+.+.+++.+.-+.....++...++++|+.|+++ ++++.+++++....++|.++|+.+|+++ .+.+
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 3556677777778888889999999999999886 2236899999999999999999999875 2211
Q ss_pred -----ccchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCC
Q 013138 103 -----GWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGS 177 (449)
Q Consensus 103 -----gw~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 177 (449)
+.++.|++.++.++++.+...+..++.+..++++.+.. ++. +.
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~~-------~~---------- 237 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EAA-------PP---------- 237 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hcc-------cc----------
Confidence 67889999888777766665444443211000000000 000 00
Q ss_pred cccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHH----HHHHHhhHhhhhHHHHHHhhccchhHHHHHhhh
Q 013138 178 RKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELK----AIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 253 (449)
Q Consensus 178 ~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k----~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~ 253 (449)
+ +......+ .+-+++.| .+.+++..-...-.-|..+....|.+.-+..+-
T Consensus 238 ~--~~~~~~~~------------------------~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~ 291 (477)
T TIGR01301 238 S--KHGEEAFF------------------------GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYG 291 (477)
T ss_pred c--ccchhhhH------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcC
Confidence 0 00000000 00011111 122233333333333444444455555443221
Q ss_pred ccCCCCCCceeC---cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHH
Q 013138 254 DTHVGNSSFKIP---PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRM-GIGLFISILSMIAAAVLELIR 329 (449)
Q Consensus 254 ~~~~g~~g~~i~---~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i-~iG~~l~ai~~l~l~~~~~~~ 329 (449)
..+-.+..++-- ..+-..++++.. .+.+.++.++.+| .+.++++ .++.++.+++++...+++...
T Consensus 292 ~~~~~~~~y~~gvr~G~~~l~~~s~~~----~i~s~~l~~l~~~-------~g~~k~~~~~s~~~~~~~l~~~~~i~~~~ 360 (477)
T TIGR01301 292 GSVNQGAKYDDGVRAGAFGLMLNSVVL----GITSIGMEKLCRG-------WGAGKRLWGIVNIILAICLAATVLVTYVA 360 (477)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------hccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 110000000000 000111122221 2334334344444 3332233 688888888888887765320
Q ss_pred HHHHhhcCCCCC-CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh--hhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013138 330 LRMVREHNYYDL-PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD--AMRSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 330 ~~~~~~~~~~~~-~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~--~~~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
.+.....+-.+. ++..-..+..+....+.|+........=++++.+..|+ +..|.++|+.|++..+.+.+.+...+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred hccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 01011135667777888999888887778889999995 455999999999999999999887777
Q ss_pred hhcc
Q 013138 407 VTSI 410 (449)
Q Consensus 407 ~~~~ 410 (449)
+.+.
T Consensus 441 ~~~~ 444 (477)
T TIGR01301 441 WDQL 444 (477)
T ss_pred HHHH
Confidence 5443
No 95
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.93 E-value=1.3e-07 Score=94.90 Aligned_cols=272 Identities=12% Similarity=0.133 Sum_probs=165.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhh-
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFG- 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~- 109 (449)
.......++..++|+|-+.......+++.|..+||+ |.++.++.|.+.-+|..++..+.|.+.+.++..-..-
T Consensus 87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 87 LGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 455566677788999999999999999999999987 9999999999999999999999998887766432222
Q ss_pred H---hHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCcc
Q 013138 110 I---PAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDF 186 (449)
Q Consensus 110 i---~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 186 (449)
+ +.+.+++.++..+-.+++..+.++.. ..++.
T Consensus 161 ~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~---------------------------------------------~~~~~ 195 (403)
T PF03209_consen 161 IQGVALIALLLNLIALWGQEPRRSRRAAAA---------------------------------------------ERPRP 195 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccccCC---------------------------------------------CCCCc
Confidence 2 22333333333322222221111000 00001
Q ss_pred chhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc
Q 013138 187 SFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP 266 (449)
Q Consensus 187 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~ 266 (449)
.+.+..... . . + .+.+++ ...+++....|++-+... + .+|..=|.+++
T Consensus 196 ~f~~a~~~~--------~-------~-~--~~a~~f--~~fl~l~t~a~~~QD~iL-----------E-Pygg~Vfgmsv 243 (403)
T PF03209_consen 196 PFREAWRQV--------W-------A-S--PQARRF--FVFLFLGTLAFFMQDVIL-----------E-PYGGEVFGMSV 243 (403)
T ss_pred cHHHHHHHH--------H-------h-C--CChhHH--HHHHHHHHHHHHhhHHHc-----------C-CchhHHcCCCH
Confidence 111111000 0 0 0 112221 122223333322221111 1 11100111333
Q ss_pred cc---ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 013138 267 AS---LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE 343 (449)
Q Consensus 267 ~~---l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~ 343 (449)
+. ++.+..+..++...+..++.. |. .++.+...+|+...++++.........
T Consensus 244 ~eTT~Lta~~~~G~L~G~~~~g~~l~----~~------~~~~~~a~~G~~~~~~~f~lii~a~~~--------------- 298 (403)
T PF03209_consen 244 GETTRLTAFWGGGTLLGMLLAGFLLS----RR------LGKKRTAALGCLLGALAFALIILAGPL--------------- 298 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----CC------CCchHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 32 445555666666666555422 21 344445567888888887766554322
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 344 MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 344 ~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
-+.|.+.+..+++|+|.++......+..++.++++..|..+|.|...++++..+|..+.+...+...
T Consensus 299 --~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 299 --GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred --ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999888888887766533
No 96
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.92 E-value=8.3e-08 Score=99.07 Aligned_cols=273 Identities=12% Similarity=0.120 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...+.+...+..++...+.....+++.|..++++ +|.+..++.....++|.++...+.+.+.+.. +|+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 3445777777899999999999999999998654 3999999999999999977776666665322 588
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013138 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
+.+++.++..+++.+......|+.+++.++..+ .
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~----------------------------------------------~ 211 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKERSVEVTEQEK----------------------------------------------K 211 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeeecccccccccc----------------------------------------------c
Confidence 887776665555554443333330000000000 0
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeC
Q 013138 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIP 265 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~ 265 (449)
..+.+.. + .+.+.|. ...++......+.......+.......+. ++ .+-.
T Consensus 212 ~~~~~~~---------------~------~~~~nr~---~~~l~~~~~~~~~~~~~~~~~~~y~~~~v---l~---~~~~ 261 (428)
T PF13347_consen 212 ISLRDSL---------------R------SLFRNRP---FRILLLAFFLQWLAFALMNTFLPYYFTYV---LG---NEGL 261 (428)
T ss_pred cccccch---------------h------hhcccch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHH---hc---Cchh
Confidence 0000000 0 0000111 12222333333344333333322222221 12 0000
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013138 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+.+..+..+..++..|++.. +.+| ++.++.+..|.++.+++.+++.+...
T Consensus 262 ~~~~~~~~~~~~~v~~~~~~~----l~~r-------~gk~~~~~~~~~~~~~~~~~~~~~~~------------------ 312 (428)
T PF13347_consen 262 ISIFMLIFFVASIVGSPLWGR----LSKR-------FGKKKVYIIGLLLAALGFLLLFFLGP------------------ 312 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHH-------ccceeehhhhHHHHHHHHHHHHHHHh------------------
Confidence 111222333333444444433 3344 45556778899998888888777631
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-------hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccCC
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNG 415 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP-------~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~~~ 415 (449)
.+.+++.+..++.|++.+..++...+...+.++ ++..|...|++++...+|..+++.+.+.+.+..+.++
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~ 389 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDA 389 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence 367888889999999999999888888888887 4557999999999999999999999998876555333
No 97
>PRK09669 putative symporter YagG; Provisional
Probab=98.90 E-value=1.6e-07 Score=97.36 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-------hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-------DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-------~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
+.+.+++..++.+++++...+...+.+.+.+| ++..|...|++++...+|..+|+.+.+.+.+..+.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556667788999999999999999988886 44567889999999999999999999987665543
No 98
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.89 E-value=1.3e-07 Score=97.60 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.++.++.++++..+..... ...+++.+++..++.|+++++..+....++.+..|++.
T Consensus 278 ~g~r~~l~~~~~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~ 341 (418)
T TIGR00889 278 FGIKKVMLLSLVAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI 341 (418)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 56667788888888887765554210 01234446667789999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSL-TTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~-~~~~lG~~lg~~l~~~~~~ 409 (449)
||+++|+.+ ...++|+.+|+.+.+.+.+
T Consensus 342 ~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 342 RASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999997 6789999999999987754
No 99
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.71 E-value=1.5e-06 Score=91.01 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
++.++.+.++.++.+++.+.+...... ...+.+.+++..++.+++.+...+...+.+.+.+|
T Consensus 293 ~gkk~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 293 LSRRILWAGASIFPVLSCGVLLLMGLA---------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcc---------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 555566667777666666554332100 01245556677788999999999998999998877
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5557779999999999999999999997765544
No 100
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.60 E-value=1.2e-05 Score=84.16 Aligned_cols=66 Identities=18% Similarity=0.041 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
+.|.+.+..++.|+..+-..+..-++..+.+|+++.+...|++.+..-..+.+|+.+++.+.+.++
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555788999999999999999999999999999999999999999999999999986543
No 101
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.52 E-value=5.6e-06 Score=81.72 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i 110 (449)
+...++.+-++.|.|-+.......++|.+.||++ -+..+++|..+.++|+.+++.+...+.++. +||....+
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5678899999999999999999999999999976 588999999999999999999999999887 79977665
Q ss_pred hHHHHHHHH
Q 013138 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
=+..-++++
T Consensus 171 WAl~allAl 179 (395)
T COG2807 171 WALLALLAL 179 (395)
T ss_pred HHHHHHHHH
Confidence 443333333
No 102
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.51 E-value=6.8e-06 Score=86.09 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhee------cccccc
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWI------QDNEGW 104 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L------~~~~gw 104 (449)
.+.+.+++-+++.|+-++...|+...+++.+|.+++ |+..+++|+...++|.++|.++...+ ....||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 366888999999999999999999999999999887 99999999999999999999999885 345799
Q ss_pred chhhhHhHHHHHHHHHHH
Q 013138 105 GWGFGIPAVAMAIAVVSF 122 (449)
Q Consensus 105 ~~iF~i~~~~~~l~~i~~ 122 (449)
||.|+|.+++.++..++.
T Consensus 206 ~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVV 223 (495)
T ss_pred eeehhHHHHHHHHHHheE
Confidence 999999997665555443
No 103
>PRK11462 putative transporter; Provisional
Probab=98.49 E-value=2.2e-05 Score=82.01 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-------ccc
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-------GWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-------gw~ 105 (449)
...+++.-.+..++...+...-.++..++.++.+ +|.+..++.....++|.++++.+...+.+.. +|+
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 3445555566788888888899999999987654 4999999999999999988877765444332 466
Q ss_pred hhhhHhHHHHHHHH
Q 013138 106 WGFGIPAVAMAIAV 119 (449)
Q Consensus 106 ~iF~i~~~~~~l~~ 119 (449)
....+.++..+++.
T Consensus 184 ~~~~i~~ii~~i~~ 197 (460)
T PRK11462 184 GGIAVLSVVAFMML 197 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 55554444333333
No 104
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.48 E-value=1.8e-05 Score=81.22 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=75.9
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013138 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
..+|+.+| ++..+.+.++.++.++=..+.+..+. +....+..+.+..+++|+.-++......
T Consensus 262 ~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~~---------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 262 FSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFSD---------------PWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhcC---------------CcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455555 78888888998888777777766410 0001122234445689999999999999
Q ss_pred HHHhhhcChhhHHHHHHHHHHH-HHHHHHHHhHHHhhhhc
Q 013138 371 EFFYEQAPDAMRSLCSALSLTT-VALGNYLSSLLVTIVTS 409 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~-~~lG~~lg~~l~~~~~~ 409 (449)
.++.+.+|++.|+++++++... .++|..+|+.+.+.+.+
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998765 68999999999987754
No 105
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=3.1e-06 Score=90.95 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=84.7
Q ss_pred CCCCCCCCCcccc-CCCchH-HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHh
Q 013138 15 PVCHGPRGEETCQ-VTDAQS-ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIAS 92 (449)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~-~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp 92 (449)
+.|+.......|. .++..+ .+|+++.++.|+|+..+.|...+++=|...+++ -...+++++.+.-+|+++|.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGf 290 (735)
T KOG3626|consen 217 NLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGF 290 (735)
T ss_pred cccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHH
Confidence 5666554444443 444334 478899999999999999999999988887776 67899999999999999999
Q ss_pred hhhheecccc-------------------ccchhhhHhHHHHHHHHHHHHhcccccc
Q 013138 93 SVLVWIQDNE-------------------GWGWGFGIPAVAMAIAVVSFFSGTRLFR 130 (449)
Q Consensus 93 ~lgg~L~~~~-------------------gw~~iF~i~~~~~~l~~i~~~~~~~~~~ 130 (449)
++|+++.+.| .|+..|++++.+.++..+-+++.-|.++
T Consensus 291 llgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 291 LLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 9999875422 4889999998877777766665554443
No 106
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3.3e-06 Score=80.56 Aligned_cols=279 Identities=10% Similarity=0.123 Sum_probs=161.2
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccc
Q 013138 26 CQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWG 105 (449)
Q Consensus 26 ~~~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~ 105 (449)
|.....++|....++++.|+|+-......+.+...+|..+| .+.+|+++..+.-+|..+-..+.++|.++.+-
T Consensus 129 ~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~- 201 (459)
T KOG4686|consen 129 AGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR- 201 (459)
T ss_pred hchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH-
Confidence 44456799999999999999999999999999999999887 89999999999999999999899998776541
Q ss_pred hhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCc
Q 013138 106 WGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKD 185 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 185 (449)
++=...-..+++...+-. +. ...-+..+..++....
T Consensus 202 --~~~~~ghT~LG~~l~~~~-~t-------------c~~slical~lg~~D~---------------------------- 237 (459)
T KOG4686|consen 202 --MFPGVGHTLLGLWLCFEV-KT-------------CKQSLICALSLGLSDD---------------------------- 237 (459)
T ss_pred --hcccchHHHHHHHHHHHH-HH-------------HHHHHHHHHHhhhhhh----------------------------
Confidence 110111112222221110 00 0000111111100000
Q ss_pred cchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhh---HHHHHHhhccchhHHHHHhhhccCCCCCCc
Q 013138 186 FSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATG---IIFSAVYSQMSSLFVLQGERMDTHVGNSSF 262 (449)
Q Consensus 186 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~---~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~ 262 (449)
++..+.+...+.....| +. .|++.+ ..|+|... +.|+.....+.+ +-+...+.++|
T Consensus 238 -----rAerilh~e~g~~Ge~p----kL---tdv~~f--~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~rfG---- 296 (459)
T KOG4686|consen 238 -----RAERILHLEEGFLGEEP----KL---TDVNTF--YPPFWVLVIICVLYYVAWFPFIT---LGPMFFQKRFG---- 296 (459)
T ss_pred -----HHHHHHhhhcCcccCCc----cc---cccccc--CccHHHHHHHHHHHHHHHHHHhh---hhHHHHHHhhC----
Confidence 00000000000000001 11 222211 23444333 333333333322 22233344556
Q ss_pred eeCcccccchhHHHHHHH---HHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013138 263 KIPPASLSIFDTLSVIFW---VPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYY 339 (449)
Q Consensus 263 ~i~~~~l~~ln~~~ili~---~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~ 339 (449)
+++..-+++++..-.+. .|+...+ .+|++++ .+.+..+.+....+=.++.+.+
T Consensus 297 -lS~~~a~~i~s~vy~Isav~spvfg~i----~Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft~------------- 352 (459)
T KOG4686|consen 297 -LSAVSAGNILSTVYGISAVLSPVFGAI----SDKYGFN------LWWVASACILTLLGHSGLFFTF------------- 352 (459)
T ss_pred -CChhhccchhhhhhhhhhhhhhhHHHh----Hhhhcce------ehhHHHHHHHHHHHhhhHHhhh-------------
Confidence 44444566666555443 3444443 4444332 2334444444444444444321
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 340 DLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++ ...+.+.|++..+..-..+-.+...+|+++.|++-|.....+++|-++.+.+.+++.+
T Consensus 353 ------lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 353 ------LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred ------ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 233 3456788999999888888899999999999999999999999999999999988764
No 107
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.42 E-value=4.1e-05 Score=81.13 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+-..+.+.+++.+++.|++.+....+...+++|.++++. |..+.++ +.....++.++|++++++.. +|||.
T Consensus 166 a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 166 AFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred HHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 444688999999999999999999999999999999987 9999999 99999999999999999987 99999
Q ss_pred hhHhHHHHHHHHHH
Q 013138 108 FGIPAVAMAIAVVS 121 (449)
Q Consensus 108 F~i~~~~~~l~~i~ 121 (449)
+++.....++.++.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99866544444433
No 108
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.38 E-value=7e-05 Score=77.91 Aligned_cols=304 Identities=10% Similarity=0.059 Sum_probs=162.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhh--eeccccccchhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLV--WIQDNEGWGWGF 108 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg--~L~~~~gw~~iF 108 (449)
.+...+.+++++.|+..|+......-++.+..|++. |+..-...-+..++|.++|..++- .+.+.-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 577899999999999999999999999999999887 999999999999999999966552 555666799999
Q ss_pred hHhHHHHHHHHHHHHhccccccccCC----CCCchhHHHHHHHHHHHhccCcCCCCc-cchhhcccccccccCCcccCCC
Q 013138 109 GIPAVAMAIAVVSFFSGTRLFRNQKP----GGSPLTRICQVVAASIRKHKVELPADK-SLLYETADAESNITGSRKLDHT 183 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~~~----~~~~~~~~~~vl~~~~~~~~l~~~~~~-~~l~~~~~~~~~~~~~~~l~~~ 183 (449)
..+++..++.++.+.+. +|.|+ +.++.....+.+ +. .+..+. ....+.+
T Consensus 188 ~~~~i~~~~~l~~l~~~----PESPk~Ll~~k~~~~~A~~sl----~~---y~G~~~~~~~~e~~--------------- 241 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPFL----PESPKYLLIKKGDEEEARKAL----KF---YRGKEDVEAEIEEM--------------- 241 (485)
T ss_pred HHHHHHHHHHHHHHhcC----CCCcchHHHHcCCHHHHHHHH----HH---HhCCCcchhHHHHH---------------
Confidence 88876555555444332 22111 011111111111 00 000000 0000000
Q ss_pred CccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchh----HHHHHhhhccCCCC
Q 013138 184 KDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSL----FVLQGERMDTHVGN 259 (449)
Q Consensus 184 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~----~~~~~~~~~~~~g~ 259 (449)
.+...... .. ..+..+..++.+.+.. |.. +.+... .....|+... ++......+.
T Consensus 242 ---~~e~~~~~---~~-------~~~~~sl~~~~~~~~l-R~~-~~i~~~--v~~~qq~sGi~ai~~Yst~i~~~a---- 300 (485)
T KOG0569|consen 242 ---LREIEEEE---LE-------KKKQISLRQLLKNPTL-RRP-LLIGIV--VSFAQQFSGINAIFFYSTSIFKTA---- 300 (485)
T ss_pred ---HHHHHHhc---cc-------cccCCcHHHHhcCcch-hHH-HHHHHH--HHHHHHhcCcceeHHHHHHHHHHc----
Confidence 00000000 00 0000000111111111 111 111111 1122233221 1222122222
Q ss_pred CCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013138 260 SSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYY 339 (449)
Q Consensus 260 ~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~ 339 (449)
|++.+.....++....+-+...+.+.+ +.+|+ +++..+..++.++++..+.+...........
T Consensus 301 -G~~~~~a~~an~~~g~v~~~~t~~~~~---lid~~-------gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~------ 363 (485)
T KOG0569|consen 301 -GFTPEEAQYANLGIGIVNLLSTLVSPF---LIDRL-------GRRPLLLISLSLMAVALLLMSIALFLSNSFG------ 363 (485)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 344444445555555555555554443 35554 4445777888888777777666544311100
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH-hhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 340 DLPEMPMSIMWQVPQYFLIGCAEVFT-FIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~~il~glge~l~-~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++-.+..+...++..++-.+. .|..+-+..+.+|++.|+.+++.-...+-+.+.+-+...-.+.+
T Consensus 364 -----~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~ 429 (485)
T KOG0569|consen 364 -----SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN 429 (485)
T ss_pred -----hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112234444444444333 47778899999999999999999999999988887777665554
No 109
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.36 E-value=3.5e-05 Score=81.30 Aligned_cols=309 Identities=14% Similarity=0.101 Sum_probs=161.3
Q ss_pred hHHHHHHHHH-HHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVALY-LIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~-l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+-+++... +.|+|.|+.......+++.+|+++ |+.+.++-.....+|.++=|.+.-++.+.+|||+.+++
T Consensus 133 ~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 133 SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 4555555554 489999999999999999888643 99999999999999999999999999999999999997
Q ss_pred hHHHHHHHHHHHHhccccccccCCCC-CchhHHHHHHHHHHHhccCcCCCCccc-hhhcccccccccCCcccCCCCccch
Q 013138 111 PAVAMAIAVVSFFSGTRLFRNQKPGG-SPLTRICQVVAASIRKHKVELPADKSL-LYETADAESNITGSRKLDHTKDFSF 188 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~vl~~~~~~~~l~~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~ 188 (449)
-+...+-..+.-...++.....++.+ ++... .....+... ..+. +.++...+....+..+
T Consensus 206 ~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---- 267 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-------------SAASVESTPKPVEL-RISERDSGLKKLSLSN---- 267 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-------------cccccccccccccc-ccccCCCCCCcccccc----
Confidence 66544333333333333211111110 00000 000000000 0000 0000000000000000
Q ss_pred hhhhhhhhccccccccCCCCccccchh---HHHHHHHHHH---hhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCc
Q 013138 189 FDKAAVEIQSDNIKESVNPWRLCTVTQ---VEELKAIVRL---LPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSF 262 (449)
Q Consensus 189 l~~a~~~~~~~~~~~~~~~~~~~~~~~---v~~~k~~~~~---~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~ 262 (449)
.....- ....++....+. ..|.+ +++- +.+.+...+..+.+. ..+...+.+.+ ..+
T Consensus 268 --~~~~~~-------~~~~~~~~~~~~~~~~~d~~-ll~~~~fl~~~~~~~~~~~g~~---~p~~~l~~~~~-~~g---- 329 (509)
T KOG2504|consen 268 --LATLKR-------GPDKWRNSPLQAFLSMLDLS-LLKDPKFLLLALSNLFAYLGFN---VPFVYLPSYAK-SLG---- 329 (509)
T ss_pred --hhhhhh-------CCccccccchhhhhhhhhHH-HHcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcC----
Confidence 000000 000000000000 01122 1121 111111111111111 11222222333 223
Q ss_pred eeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 013138 263 KIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP 342 (449)
Q Consensus 263 ~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~ 342 (449)
+..-....++-...+.+.+..++..-..+++. .+......+++++.+++...+.+.
T Consensus 330 ------~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~-~~~~~~~~~~ll~~gl~~~~~p~~----------------- 385 (509)
T KOG2504|consen 330 ------LSSNDAAFLLSIIGVSDIIGRIILGLLADKPG-IRALVLFLLTLLIAGLARLFLPFA----------------- 385 (509)
T ss_pred ------CChhhhHHHHHHHHHhhhhhhhhhhhhcCccc-cchHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 11111122222222222222222222333311 234555566666666666555543
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 343 EMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 343 ~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
.+++.++..-++.|+..+........++.+.++.+.-+.+.|+..+.++++..+|+.+.+.+.+.
T Consensus 386 ---~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~ 450 (509)
T KOG2504|consen 386 ---TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDI 450 (509)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeec
Confidence 56777888889999999999999889999999999999999999999999999999999866543
No 110
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.26 E-value=2.3e-05 Score=80.25 Aligned_cols=97 Identities=9% Similarity=0.024 Sum_probs=80.8
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 013138 289 VPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 368 (449)
Q Consensus 289 ~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~ 368 (449)
.++..++.+| +++++.+.++.++.+++++.+... .++|+++...+++|+++++..|+
T Consensus 63 ~~~~G~l~dr---~g~k~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 63 GIFGGAIADR---FGAKPMIVTGMLMRAAGFATMAIA--------------------HEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhhhhHHHHH---hCchHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 666677888999888888877653 46778888889999999999999
Q ss_pred hHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 369 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 369 ~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..+.+.+.+|+++|++++|+.....++|..+|+.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888664
No 111
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.22 E-value=5.3e-05 Score=75.95 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc
Q 013138 29 TDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 100 (449)
Q Consensus 29 ~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~ 100 (449)
....+..|++++++++.|-|..+...++++++..++++ -+.-+++.-....+|+++||.+++++..
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999876 3445666666779999999999998876
No 112
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.21 E-value=5.2e-05 Score=77.38 Aligned_cols=113 Identities=7% Similarity=0.004 Sum_probs=83.8
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..++++-++.=.++ -.+..++.+| +++++-+.++.+++++=.+.+++. ++.
T Consensus 261 ~G~l~s~~v~~E~~~-m~~~p~li~r-------ig~k~~Lllag~i~~iRi~~~~~~--------------------~~~ 312 (412)
T PF01306_consen 261 YGYLWSVQVFLEALM-MFFSPWLINR-------IGAKNLLLLAGVIMAIRIIGSGFA--------------------TNP 312 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHT----------------------SH
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHh-------cChHhHHHHHHHHHHHHHHHHhhh--------------------cch
Confidence 455555554443333 3333334555 678888888888888777777664 677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHH-HHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSAL-SLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl-~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|++++.-.+.++-..+.-....-++.++.|++..++...+ +++..++|..+.+.+.+.+.+
T Consensus 313 ~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd 374 (412)
T PF01306_consen 313 WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD 374 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence 8889999999999999999999999999999999888877 579999999999998887754
No 113
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.19 E-value=6.9e-05 Score=77.56 Aligned_cols=87 Identities=17% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+++.+. .+++.++...++.|++++...+....++.+..|+++
T Consensus 85 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 85 SNARYFMGIGLIATGIINILFGFS--------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE 144 (434)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence 566677888888888888766654 456667777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++|+++...++|..+++.+.+.+.
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887664
No 114
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.18 E-value=2.7e-07 Score=97.97 Aligned_cols=94 Identities=14% Similarity=0.223 Sum_probs=3.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc----------
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---------- 101 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~---------- 101 (449)
-...|+++-++.|+|+..+.+...+++=|..++++ -...+++++.+..+|+++|.++|+...+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46788999999999999999999999999998887 67889999999999999999999977432
Q ss_pred -----------c-ccchhhhHhHHHHHHHHHHHHhccccccc
Q 013138 102 -----------E-GWGWGFGIPAVAMAIAVVSFFSGTRLFRN 131 (449)
Q Consensus 102 -----------~-gw~~iF~i~~~~~~l~~i~~~~~~~~~~~ 131 (449)
+ .|+..|++.+...++..+-+.+..|++++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPG 255 (539)
T ss_dssp ------------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 1 39999998887666665555554454443
No 115
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.15 E-value=6.1e-05 Score=77.47 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .++++++...++.|++++...|....++.+..|+++
T Consensus 70 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (412)
T TIGR02332 70 IGARRWIAGIMVLWGIASTATMFA--------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF 129 (412)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence 556677888998988888887764 467788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++|+++....+|..+++.+.+.+.
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887654
No 116
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.07 E-value=6.7e-06 Score=69.51 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+.+.+.+.+++.+...|...+++.|.+|+++ |++++++.....++|..+||.+++++.+..+|++.|++.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 45667888899999999999999999999999887 999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 013138 112 AVAMAIAVVSF 122 (449)
Q Consensus 112 ~~~~~l~~i~~ 122 (449)
....+++.+..
T Consensus 124 ~~~~~~~~~~~ 134 (141)
T TIGR00880 124 AILALAAFILL 134 (141)
T ss_pred HHHHHHHHHHH
Confidence 76555554443
No 117
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.07 E-value=9.7e-05 Score=76.03 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++++++.+++...... .++++++...++.|+|.++..+..+.++.+..|++.
T Consensus 65 ~G~r~~~~~g~~l~~~g~~l~~~~~~~-----------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 127 (410)
T TIGR00885 65 LSYKAGILLGLFLYALGAFLFWPAAEI-----------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST 127 (410)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHhh-----------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence 666778999999999998776543211 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+++.+..+++|..+|+.+...+.
T Consensus 128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 128 ATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988664
No 118
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.06 E-value=0.0005 Score=69.53 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+++.+-+.+.+..-+.+.+..-+..++.+| ++.++.+.+|+++..+.++...+.+. +..+
T Consensus 285 ls~~~lll~g~~~~vvA~lg~ii~g~Ld~r---fg~k~vl~~~lvi~~~~~~~~~~~~~-----------------~~~f 344 (438)
T COG2270 285 LSSTELLLIGIALSVVAALGAIIAGFLDER---FGSKPVLMIGLVILSIAALYLIFLEG-----------------ELDF 344 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCceeehHHHHHHHHHHHHHHHccc-----------------cHHH
Confidence 445554444444433333322223333333 67777888888888777777766531 1233
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 412 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~ 412 (449)
....++.|...+-+....=++..+.+|+++.++..|++++....++.+|+.+++.+.+.++
T Consensus 345 ---~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 345 ---WILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ---HHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 3334677899999999999999999999999999999999999999999999999987755
No 119
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.02 E-value=0.00034 Score=72.46 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=70.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+...+.+.+++.|++.|... ....++..++|+++ |+++.+++..+.++|.++|+++++++. .+||++-+.+
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L 184 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence 367889999999999999999 99999999999887 999999999999999999999999954 6899986665
Q ss_pred hH---HHHHHHHHH
Q 013138 111 PA---VAMAIAVVS 121 (449)
Q Consensus 111 ~~---~~~~l~~i~ 121 (449)
+. ....+++++
T Consensus 185 n~Isl~s~~~a~~~ 198 (511)
T TIGR00806 185 NIISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 53 444444444
No 120
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.00 E-value=0.00013 Score=73.73 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .+++.++...++.|++++...+....++.+..|+++
T Consensus 74 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 133 (405)
T TIGR00891 74 YGRRLPMVTSIVLFSAGTLACGFA--------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL 133 (405)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence 555667888888888887776654 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.++++.+...++|..+++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 134 RNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776643
No 121
>PRK10054 putative transporter; Provisional
Probab=98.00 E-value=0.0002 Score=73.27 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=73.8
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013138 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.++.++.+++++.+.+. .+++..+....+.+.+.....|...
T Consensus 62 ~~G~l~Dr---~g~k~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~ 118 (395)
T PRK10054 62 GFGILADK---FDKKRYMLLAITAFASGFIAIPLV--------------------NNVTLVVLFFALINCAYSVFSTVLK 118 (395)
T ss_pred HHHHHHhh---cCcchhHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 556667788888888888777664 2445555556677778888888888
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
....+..|++.|+++.|+.+...++|..+|+.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888664
No 122
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.99 E-value=6.8e-05 Score=78.08 Aligned_cols=266 Identities=14% Similarity=0.080 Sum_probs=151.2
Q ss_pred ccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHHHHHHHhcc
Q 013138 47 TGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGT 126 (449)
Q Consensus 47 ~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~~i~~~~~~ 126 (449)
.+.+.....+.++|...+|+ |.+.+++.......+..+||.+++++.+.+|+-..|+++....+++.+......
T Consensus 126 ~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l 199 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFL 199 (463)
T ss_pred hhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 34466777888999998886 999999999999999999999999999999999999999887777776544433
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCC
Q 013138 127 RLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVN 206 (449)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~ 206 (449)
++-..+ ++.. .. . ....++.. .+. |-...... .
T Consensus 200 ~Esl~~-~~~~-~~-------------~-~~~~~~~~----------------~~~-----~~~~~~~~--~-------- 232 (463)
T KOG2816|consen 200 PESLQE-KERS-DA-------------T-LRELTPGS----------------LDS-----SHVADAFQ--S-------- 232 (463)
T ss_pred ccccCc-cccc-cc-------------c-ccccCCCc----------------ccc-----hhhhhhhh--h--------
Confidence 321111 1100 00 0 00000000 000 00000000 0
Q ss_pred CCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce-eCcccccchhHHHHHHHHHHHh
Q 013138 207 PWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK-IPPASLSIFDTLSVIFWVPIYD 285 (449)
Q Consensus 207 ~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~-i~~~~l~~ln~~~ili~~pl~~ 285 (449)
. .. ..+.|..+.++ .......+....+..... ..+++..++ +. ...+.+..+.+..-.+ .+
T Consensus 233 ~----~~--~~~~r~~l~l~--l~~~~~~~~~~~~~~~~~---~~yl~~~f~---w~~~~~s~~~~~~~~~~~i----~~ 294 (463)
T KOG2816|consen 233 L----TK--VGPDRLLLLLL--LVAFLSSLPEAGGASDVL---LLYLKAKFG---WNKKEFSDLLSLVSILGII----SQ 294 (463)
T ss_pred h----cc--cCCCccchHHH--HHHHHHHHHHhcCceeEE---EEEEeeecC---cCHHHHHHHHHHHHHHHHH----HH
Confidence 0 00 11112111111 111111111111101000 011222322 10 0011122222222222 22
Q ss_pred HhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 013138 286 RFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFT 365 (449)
Q Consensus 286 ~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~ 365 (449)
.+..|++.+. ++..+.+.+|++.-.++..+.++. +.. |+.....+........
T Consensus 295 l~~~~~l~~~------l~~~~~i~lGl~~~~~~~~~~af~--------------------~~~-w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 295 LLLLPLLSSI------LGEKRLISLGLLSEFLQLLLFAFA--------------------TET-WMMFAAGVVVALAGIV 347 (463)
T ss_pred HHHHHHHHHH------HhhhhHhhHHHHHHHHHHHHHHHh--------------------ccc-hhhhHHHHHHHhhcch
Confidence 2333333332 222337889999999999999886 344 3445555667777888
Q ss_pred hhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 366 FIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 366 ~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+|...+++.+.++++.+|.++++....+++.+.+++++.+.+...
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877543
No 123
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.99 E-value=0.00014 Score=71.79 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+| +++++.+.++.++.+++.+++.+. .+.
T Consensus 37 ~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~ 85 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYL----SDR-------FGRRRVLIIGLLLFALGSLLLAFA--------------------SNF 85 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHH-------S-HHHHHHHHHHHHHHHHHHHHHH--------------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHH-------cCCeeeEeehhhhhhhHHHHhhhh--------------------hhH
Confidence 3344444445555555543 344 566678889999998885555542 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|.++...++.|++++...+....++.+..|+++|++++++.....++|..+|+.+.+.+.
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 678889999999999999999999999999999999999999999999999999988665
No 124
>TIGR00895 2A0115 benzoate transport.
Probab=97.98 E-value=6.2e-05 Score=75.66 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+++.+. .+.+.+++..++.|++.+...+....++.+..|++.
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (398)
T TIGR00895 79 IGRKRVLLWSILLFSVFTLLCALA--------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc--------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence 555667778888888877766653 456777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++++.+....+|..+++.+.+.+.
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887664
No 125
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.98 E-value=0.00028 Score=72.10 Aligned_cols=88 Identities=9% Similarity=-0.027 Sum_probs=77.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+.+.+. .++++++...+++|++.+...|....++.+..|+++
T Consensus 82 ~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 141 (394)
T PRK10213 82 TDRRYVVILFAVLLTLSCLLVSFA--------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT 141 (394)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHH--------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH
Confidence 677778889999988888776653 567888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.++.....++|..+|+.+.+.+.+
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
No 126
>PRK03545 putative arabinose transporter; Provisional
Probab=97.98 E-value=0.00021 Score=72.64 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=77.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .++++++...+++|++.+...|....++.+..|+++
T Consensus 71 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~ 130 (390)
T PRK03545 71 VERRKLLIGLFVLFIASHVLSALA--------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK 130 (390)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 677788899999999988877764 567888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++|++....++|..+|+.+.+.+.
T Consensus 131 r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 131 KAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999998887664
No 127
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.001 Score=68.86 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=75.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC---
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP--- 378 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP--- 378 (449)
+++++.+.+|.++.+++.+.+.+.. ..+.+..+...++.++|-+...+.-.+.+.+.++
T Consensus 299 ~gkk~~~~~~~~~~~i~~~~~~f~~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge 360 (467)
T COG2211 299 FGKKKLFLIGLLLLAVGYLLLYFTP------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE 360 (467)
T ss_pred hchHHHHHHHHHHHHHHHHHHHhhc------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence 6667888999999999999888863 2456677777788899999988887777776655
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013138 379 ----DAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 379 ----~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
++..|..-|...+.+=+|.++++.+.+......+.
T Consensus 361 ~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 361 WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999999999999998877765543
No 128
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.93 E-value=0.00016 Score=60.92 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..+.++.+++.+.+... .+.+......++.+++.....+.....+.+..|+++
T Consensus 25 ~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 25 FGRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 445556777777777777665543 356677778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++.+++.+....+|..+++.+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 999999999999999999999888664
No 129
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.92 E-value=0.00022 Score=72.32 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=74.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++...+. .+++.++...++.|++.+...|.....+.+..|+++
T Consensus 68 ~g~k~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (381)
T PRK03633 68 IGFNRSYYLASLIFAAGCAGLGLM--------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN 127 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 455667888988888888776653 467778888999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++++.+....++|..+|+.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 128 RGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999887654
No 130
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.91 E-value=0.00014 Score=75.91 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
+......+...+..|+...+ .+| +++++.+.+|.++.+++.+++... .+
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~ 89 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWL----AKR-------FGTRRLFLISTFAFTLGSLLCGVA--------------------PN 89 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHH-------hCcHHHHHHHHHHHHHHHHHHhCc--------------------CC
Confidence 34444444445555554442 333 556667888888888888777653 46
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.++...+++|++.+...|....++.+..|+++|+++++++.....+|..+|+.+.+.+.
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 7788889999999999999999999999999999999999999999999999998887664
No 131
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.90 E-value=0.00021 Score=71.83 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=75.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .+.+.++...++.|++.+...+....++.+..|+++
T Consensus 67 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 126 (385)
T TIGR00710 67 YGRRPVLLLGLFIFALSSLGLALS--------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE 126 (385)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH
Confidence 566677888888888888877654 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++.++.+....+|..+|+.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888654
No 132
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.90 E-value=0.00014 Score=72.59 Aligned_cols=109 Identities=13% Similarity=0.016 Sum_probs=84.6
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+| .++++.+.++.++.+++...+.+. .++
T Consensus 34 ~~~~~~~~~~~~~~~~g~l----~d~-------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~ 82 (399)
T TIGR00893 34 VFSAFSWGYVVGQFPGGWL----LDR-------FGARKTLAVFIVIWGVFTGLQAFA--------------------GAY 82 (399)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHh-------cCcceeeHHHHHHHHHHHHHHHHH--------------------cCH
Confidence 4444445555555555543 333 344456677888878877777654 467
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.++...++.|++.+...+....++.+..|+++|+.++++.+...++|..+++.+.+.+.
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999998887654
No 133
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.87 E-value=0.0016 Score=69.14 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc-cccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-EGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-~gw~~iF~ 109 (449)
.+...+++++++.|+|.|+..-....++++..|++. |+...+.+...+++|.++|..++....+. ++||..++
T Consensus 140 ~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 140 PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLG 213 (513)
T ss_pred hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHH
Confidence 377889999999999999999999999999998876 99999999999999999996665555433 48998887
Q ss_pred HhHHH
Q 013138 110 IPAVA 114 (449)
Q Consensus 110 i~~~~ 114 (449)
+..+.
T Consensus 214 ~~~i~ 218 (513)
T KOG0254|consen 214 LALIP 218 (513)
T ss_pred HHHHH
Confidence 65543
No 134
>PRK10504 putative transporter; Provisional
Probab=97.87 E-value=0.00032 Score=73.16 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=73.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+.+.+. .+.+.++...+++|++.+...|.....+.+..|++.
T Consensus 72 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 131 (471)
T PRK10504 72 VGVRNIFFTAIVLFTLGSLFCALS--------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ 131 (471)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHh--------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH
Confidence 555566777878877777765542 466778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.+.|+.+...++|..+|+.+.+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 132 YMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 9999999999999999999998876653
No 135
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.87 E-value=0.00033 Score=69.44 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=84.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..+..+...+..|+... +.+| +++++.+.++.++.+++.....+.... ...+.
T Consensus 39 ~~~~~~~~~~i~~~~~G~--------l~dr---~g~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 92 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGA--------LADR---YDRKKVMIGADLIRAVLVAVLPFVALL---------------GGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHHhhhH--------HHHh---hchhHHHHHHHHHHHHHHHHHHHHHHc---------------CCCcH
Confidence 334444444445555444 3333 455567777877777777666654311 01367
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++....++.|++.+...|...+++.+..|+++|+++.+..+...++|..+|+.+.+.+.
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999999999999999999999999888664
No 136
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.86 E-value=2.9e-05 Score=79.03 Aligned_cols=112 Identities=15% Similarity=0.196 Sum_probs=92.0
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
.++..-.+..++..|+.+.+ .+| .++.+.|++|..+-+++.+..++. ..
T Consensus 72 ll~~vf~v~~~i~sPl~gyL--------adr---yNR~~v~~vG~~iW~~Av~~~~fs--------------------~~ 120 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYL--------ADR---YNRKRVIAVGIFIWTLAVFASGFS--------------------NH 120 (493)
T ss_pred chhHHHHHHHHHHHHHHHHH--------Hhh---cCcceEEeeHHHHHHHHHHHHHHH--------------------HH
Confidence 35555566666777887773 233 566678999999999999988875 35
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+|.+.+.--+.|+||....|...+++.+..|...|+++.++++++..+|+.+|......+.+.
T Consensus 121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 677888889999999999999999999999999999999999999999999997766655543
No 137
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.86 E-value=0.00019 Score=74.46 Aligned_cols=86 Identities=16% Similarity=0.154 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.....+.+++..+|.+......-++..+....|.. +|+...++.+....+|.++|..++|++.++.++++.|.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i 159 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI 159 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence 3555667788889999999999999999999865542 278889999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013138 111 PAVAMAIAVV 120 (449)
Q Consensus 111 ~~~~~~l~~i 120 (449)
....-.+..+
T Consensus 160 ~~~~~~l~~~ 169 (433)
T PF03092_consen 160 SAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHH
Confidence 7655444433
No 138
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.83 E-value=0.00076 Score=68.67 Aligned_cols=86 Identities=14% Similarity=0.099 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .++++++...++.|++.+...|.....+.+..|++.
T Consensus 77 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 136 (406)
T PRK11551 77 IGRKRILIVSVALFGLFSLATAQA--------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL 136 (406)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH
Confidence 566677888888877777665543 467778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.++++.+....+|..+++.+...+
T Consensus 137 r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 137 RGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776544
No 139
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.83 E-value=0.00042 Score=71.07 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .+.+.++...++.|+|++...+....++.+..|++.
T Consensus 80 ~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 80 FGRKPLMMWSIVAYSVGTGLSGLA--------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 566678888999988888877764 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+++++++....++|..+++.+...+
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998776654
No 140
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.82 E-value=0.00031 Score=71.42 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=76.8
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013138 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.++.++.+++.+.+....... .....++++++...+++|+|++...+...
T Consensus 70 ~~G~l~Dr---~g~r~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 134 (399)
T PRK05122 70 HAGRYADT---LGPKKAVVFGLCGCALSGLLYLLAGLLA------------AWPVLSLLLLLLGRLLLGIGESLAGTGSI 134 (399)
T ss_pred hhHhHHhc---cCCcchHHHHHHHHHHHHHHHHHhhhhh------------ccchhHHHHHHHHHHHHHhhHHhhcchHH
Confidence 34444444 6677788888887777766554332110 00012466778888999999999999999
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..+.+..|+++|+++++++.....+|..+|+.+.+.+.
T Consensus 135 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 135 LWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988887664
No 141
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.81 E-value=0.00036 Score=69.76 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=78.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc-h
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM-S 347 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-s 347 (449)
+.....+...+..++...+ .+| .++++.+.++.++.+++.+++.+. . +
T Consensus 42 ~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~i~~~~~~~~--------------------~~~ 90 (366)
T TIGR00886 42 LVAVPVLAGAVLRIILGFL----VDK-------FGPRYTTTLSLLLLAIPCLWAGLA--------------------VQS 90 (366)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHH-------hCchHHHHHHHHHHHHHHHHHHHH--------------------hhh
Confidence 3444444445555555543 334 455567888999999998877764 3 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.++...+++|++.+.. ++...++.+..|+++|+.+++++....++|..+++.+...+.
T Consensus 91 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 677788889999997654 556789999999999999999999888888888777765443
No 142
>PRK10133 L-fucose transporter; Provisional
Probab=97.80 E-value=0.00054 Score=71.14 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+++..... ..+++.++...+++|+|.+...+..+.++.+..|+++
T Consensus 88 ~G~r~~l~~g~~~~~~~~~l~~~~~~-----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~ 150 (438)
T PRK10133 88 LSYKAGIITGLFLYALGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence 67778899999999999876532211 1567788899999999999999999999998877877
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+...+++.+...++|..+|+.+...+
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999998887654
No 143
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.80 E-value=0.00013 Score=76.13 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=72.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++....+..... ...+++.++...+++|++++...|....++.+..|+++
T Consensus 91 ~g~r~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 155 (467)
T PRK09556 91 KNTKQFLPFLLILSAICMLGFGASLGS---------------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK 155 (467)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHhc---------------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc
Confidence 666777888888777777665543111 12467788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
||+++|+++...++|..+++.+...
T Consensus 156 rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 156 RGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred eeeeEEeeecccchhhhHHHHHHHH
Confidence 9999999999999999998776643
No 144
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.78 E-value=0.00057 Score=72.07 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=86.4
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcch
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMS 347 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s 347 (449)
|..+...+......+...++ .+| +++++.+.+|.++.+++.+++... .+
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l----~D~-------~Grk~~l~~~~~~~~~~~~~~~~a--------------------~~ 93 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGAL----GDR-------IGFKRLLMLGGTLFGLASLAAAFS--------------------PT 93 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH-------hccHHHHHHHHHHHHHHHHHHHHc--------------------CC
Confidence 34444444444555554443 333 566678889999999999887764 57
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 348 IMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 348 ~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.++...+++|+|.+...|.....+.+.. |+++|++++|++....++|..+|+.+.+.+.+
T Consensus 94 ~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 94 ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788888999999999999998888777764 78999999999999999999999999887754
No 145
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.77 E-value=0.00055 Score=75.43 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=73.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+. .+++++++..++.|+|.+...|....++.+..|++.
T Consensus 229 ~GRR~~lii~lil~~i~~ll~afa--------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~ 288 (742)
T TIGR01299 229 LGRKQCLLICLSVNGFFAFFSSFV--------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK 288 (742)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 555667778888777777766654 456778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||..+++.+....+|..+++.+...+.
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987765443
No 146
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.76 E-value=3.6e-05 Score=78.27 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
+.+.+++..++.|++.|...|...+++.+..+++. |++.+++++...++|..+||.++|++.++.||++.|++.
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~ 383 (408)
T PRK09874 310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVT 383 (408)
T ss_pred cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHH
Confidence 45667778888999999999999999988888776 899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 013138 112 AVAMAIAVVSFFS 124 (449)
Q Consensus 112 ~~~~~l~~i~~~~ 124 (449)
+...+++.+..+.
T Consensus 384 ~~~~l~~~~~~~~ 396 (408)
T PRK09874 384 AGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHH
Confidence 8766666655433
No 147
>PRK12382 putative transporter; Provisional
Probab=97.74 E-value=0.00046 Score=70.08 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=70.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+........ ......++++++...+++|+|+....|...+.+.+..|+++
T Consensus 78 ~g~r~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 145 (392)
T PRK12382 78 YGAKRSALQGMLACGLAGLAYLLAAIL------------PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH 145 (392)
T ss_pred hcchHHHHHHHHHHHHHHHHHHhhhcc------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 556667777777666654432221000 00001356778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+++++.+....++|..+|+.+.+.+.
T Consensus 146 r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 146 SGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887664
No 148
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.73 E-value=0.00038 Score=68.32 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=76.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+... .+.+.+....++.|++.+...+....+..+..|+++
T Consensus 61 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 120 (352)
T cd06174 61 FGRRRVLLLGLLLFALGSLLLAFA--------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120 (352)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc
Confidence 445557888888888888877664 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+..++..+...++|..+++.+.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 121 RGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
No 149
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.71 E-value=0.00049 Score=70.58 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=71.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++++.+...... ...+++++....++.|++.++..+.....+.+..|+++
T Consensus 79 ~g~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 143 (417)
T PRK10489 79 YDRKKLILLARGTCGLGFIGLALNAFL---------------PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN 143 (417)
T ss_pred cCCceEEEehHHHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH
Confidence 455556667777777776655432110 01356777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++++.++++...++|..+|+.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 144 LMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 999999999999999999999887654
No 150
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.69 E-value=4.9e-05 Score=78.43 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccc------cccc
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDN------EGWG 105 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~------~gw~ 105 (449)
.+.+++...+.|++.+...|....++.|.+|+++ |++++++.+ ...++|..+||+++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567778889999999999999999999999876 999999997 56789999999999999887 4699
Q ss_pred hhhhHhHHHHHHHHHHHH
Q 013138 106 WGFGIPAVAMAIAVVSFF 123 (449)
Q Consensus 106 ~iF~i~~~~~~l~~i~~~ 123 (449)
+.|++.+...+++.+.+.
T Consensus 382 ~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987765555554443
No 151
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.69 E-value=0.0015 Score=67.87 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 013138 291 VTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQL 370 (449)
Q Consensus 291 ~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~ 370 (449)
+..++.+| +++++.+.+|.++.+++.+.+.+.... ..+++.++...++.|++++...|...
T Consensus 82 ~~G~l~Dr---~g~k~~l~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~l~gi~~g~~~~~~~ 142 (452)
T PRK11273 82 IMGSVSDR---SNPRVFLPAGLILAAAVMLFMGFVPWA----------------TSSIAVMFVLLFLCGWFQGMGWPPCG 142 (452)
T ss_pred hhhhhhhc---cCCchhHHHHHHHHHHHHHHHHhhhcc----------------cccHHHHHHHHHHHHHHHhccchHHH
Confidence 34444444 666678888888888888777664211 13566677778899999999988888
Q ss_pred HHHhhhcChhhHHHHHHHHHHHHHHHHHHHhH
Q 013138 371 EFFYEQAPDAMRSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 371 ~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~ 402 (449)
..+.+..|+++|+.++|+++...++|..+.+.
T Consensus 143 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 143 RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 88889999999999999999999988754333
No 152
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.68 E-value=0.001 Score=67.53 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
.........++..|+... +.+| .++++.+.++.++.+++.+++.+. .++
T Consensus 43 ~~s~~~~~~~~~~~~~g~--------l~dr---~g~r~~~~~~~~~~~~~~~l~~~~--------------------~~~ 91 (382)
T PRK10091 43 MISYYALGVVVGAPIIAL--------FSSR---YSLKHILLFLVALCVIGNAMFTLS--------------------SSY 91 (382)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHcc---CccHHHHHHHHHHHHHHHHHHHHh--------------------CcH
Confidence 334444444555555444 3333 566678889999999888877764 567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++....++.|++++...+.....+.+..|+++|+.+++++.....+|..+|+.+.+.+.
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 888888999999999999988889999999999999999999999999999888876554
No 153
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.67 E-value=0.0015 Score=67.65 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=76.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.+.-++..+++.+. .+++.+.+..++.|++|+... ....++++-.|+++
T Consensus 89 lG~K~vL~l~~l~Wsl~t~L~~fa--------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE 147 (511)
T TIGR00806 89 LRYKPVLVLQALSFVCVWLLLLLG--------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR 147 (511)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH
Confidence 566778888888888888877775 467889999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++|+++....+|..+++.+.+.+.
T Consensus 148 R~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 148 YQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998743
No 154
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.65 E-value=0.0012 Score=68.38 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=70.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+.+..... ...+.+.+....++.|++++...++....+.+..|+++
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~ 151 (438)
T TIGR00712 88 SNPRVFLPAGLILSAAVMLLMGFVPW----------------ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE 151 (438)
T ss_pred cCCceehHHHHHHHHHHHHHHhcccc----------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc
Confidence 55566777888888888776654310 01345556677788999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
||.++|+++...++|..+++.+.+.
T Consensus 152 rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 152 RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999998877654
No 155
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.65 E-value=0.0011 Score=69.51 Aligned_cols=87 Identities=13% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.+.+.+. .++++++...++.|++.+...+....++.+..|+++
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 141 (496)
T PRK03893 82 YGRRLAMVISIVLFSVGTLACGFA--------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL 141 (496)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 455567788888888888877764 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++++...++|..+++.+.+.+.
T Consensus 142 r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 142 RNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877554
No 156
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.64 E-value=0.00037 Score=71.65 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=73.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++.+++.++...... ..+.+.++...++.|+|.+...+....++.+..|+++
T Consensus 98 ~grr~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 160 (481)
T TIGR00879 98 FGRKKSLLIIALLFVIGAILMGLAAF-----------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL 160 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc-----------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh
Confidence 66677788888888888877765421 2455678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013138 382 RSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
|+.++++++...++|..+++.+.
T Consensus 161 r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 161 RGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887
No 157
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00022 Score=71.45 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=94.7
Q ss_pred HHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013138 282 PIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 282 pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
.+.+.++.|+.+.+..| .+.+..|.+|++++..+-+++++. .+++.++.+-.++|+|
T Consensus 116 A~~qllvnp~~G~l~~~---iGy~ipm~~Gl~vmf~sTilFafg--------------------~sy~~l~vAR~LQgvg 172 (464)
T KOG3764|consen 116 ALVQLLVNPFFGNLIDR---IGYKIPMVAGLFVMFLSTILFAFG--------------------NSYPMLFVARSLQGVG 172 (464)
T ss_pred HHHHHHhcccchhhHHH---hccccHHHHHHHHHHHHHHHHHHc--------------------chhHHHHHHHHHhhhh
Confidence 55666666666666665 788889999999999999999987 4667899999999999
Q ss_pred HHHHhhhhHHHHhhhcChhh-HHHHHHHHHHHHHHHHHHHhHHHhhhhccccc
Q 013138 362 EVFTFIGQLEFFYEQAPDAM-RSLCSALSLTTVALGNYLSSLLVTIVTSISTK 413 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~-~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~ 413 (449)
..++...+.+.+.+..|++. ||.++|+.....++|..+|+.+.+.+.+..++
T Consensus 173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 99999999999999999987 59999999999999999999999988765553
No 158
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.00033 Score=70.79 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=81.7
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013138 292 TRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 371 (449)
Q Consensus 292 ~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~ 371 (449)
+.-+.+| .+|+..+.+|+++.++.++++++. .|++.+..-.++.|.-.+.-.|+...
T Consensus 84 ~G~~sDr---~npr~fm~~gLilsai~nil~Gfs--------------------~s~~~~~~l~~lng~fQg~Gwpp~~~ 140 (448)
T COG2271 84 MGVLSDR---SNPRYFMAFGLILSAIVNILFGFS--------------------PSLFLFAVLWVLNGWFQGMGWPPCAR 140 (448)
T ss_pred hhhhccc---CCCceeehHHHHHHHHHHHHHhhh--------------------hHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 4445565 789999999999999999999885 47788888889999999999999999
Q ss_pred HHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHH
Q 013138 372 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 372 ~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
.+.+--|+++||+..++||.+.++|+.+.+.+.
T Consensus 141 ~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 141 TITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 999999999999999999999999999999988
No 159
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.58 E-value=0.00078 Score=68.71 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=74.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..|.++.+++.+...+. .+++.++...+++|+|++...+...+++.+..| ++
T Consensus 71 ~G~r~~l~~~~~l~~~~~~~~~~a--------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~ 129 (393)
T PRK09705 71 VSERRSVAISLLLIAVGALMRELY--------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR 129 (393)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHC--------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc
Confidence 567788999999999999988875 466778888999999999999999998888877 77
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++|++.....+|..+|+.+...+.
T Consensus 130 ~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 130 TPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877654
No 160
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.58 E-value=4e-05 Score=79.93 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~ 109 (449)
.+.+.+++.+++.|++.+...++..+++.|.+|+++ +++.++++....++|..+||.++|++.+.. +|++.|+
T Consensus 331 ~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~ 404 (455)
T TIGR00892 331 GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFY 404 (455)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHH
Confidence 355677888999999999999999999999998876 899999999999999999999999999877 5999999
Q ss_pred HhHHHHHHHHHHH
Q 013138 110 IPAVAMAIAVVSF 122 (449)
Q Consensus 110 i~~~~~~l~~i~~ 122 (449)
+.+...+++.+..
T Consensus 405 ~~~~~~li~~~~~ 417 (455)
T TIGR00892 405 ASGSIVVSAGLFL 417 (455)
T ss_pred HhhHHHHHHHHHH
Confidence 8877666655543
No 161
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.55 E-value=0.00019 Score=71.46 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=71.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.+|.++.+++.+++.+. .+.+.++...++.|++.+...|....++.+..|+++
T Consensus 57 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 116 (379)
T TIGR00881 57 SNPRVFLPIGLILCAIVNLFFGFS--------------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE 116 (379)
T ss_pred hCCeehhHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh
Confidence 556667888988888888877765 466778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 013138 382 RSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~ 402 (449)
|+.++++++....+|..+++.
T Consensus 117 r~~~~~~~~~~~~~g~~~~~~ 137 (379)
T TIGR00881 117 RGTWVSFWNCSHNVGGGLLPP 137 (379)
T ss_pred heeeEeehhccchhHHHHHHH
Confidence 999999999999999999984
No 162
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.55 E-value=0.0027 Score=66.19 Aligned_cols=87 Identities=13% Similarity=0.013 Sum_probs=67.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.++..+.+.+... +...|++.+++..++.|++ +..++.....+.+..|+++
T Consensus 97 ~G~R~v~~~~~ll~~i~~~~~~~a~~---------------~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~ 160 (462)
T PRK15034 97 FGGRRWTVFSTAILIIPCVWLGIAVQ---------------NPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK 160 (462)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHc---------------ccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH
Confidence 67778889999988888887776310 1125788889999999998 6688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 013138 382 RSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
||+++|++....++|..++..+.
T Consensus 161 rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 161 QGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999655555555444433
No 163
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.54 E-value=0.0013 Score=66.03 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=74.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.+|.++.+++.+.+.+. .+.+.++...+++|++.....+....++.+..|+++
T Consensus 53 ~g~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
T PRK11102 53 FGRKPVILGGTLVFALAAVACALA--------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE 112 (377)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 556677888888888888877654 356677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++.+....+|..+++.+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877664
No 164
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.52 E-value=0.0023 Score=64.94 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++.+++...+... .+.++++...+++|++.+...+.....+.+..|+++
T Consensus 65 ~g~r~~l~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 65 SGRKPVAIPGAALFIIASLLCSLA--------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHh--------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 444567778888888888776653 456677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.+.++.+....+|..+++.+.+.+.
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876553
No 165
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.52 E-value=0.0017 Score=66.40 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+..+.++.+++.+.+...... ..+++.++...++.|+|.....+.....+.+..|+++
T Consensus 75 ~g~k~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~ 138 (402)
T TIGR00897 75 IGPLKTMMIGLLLWCVGHAAFIVFGLG----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN 138 (402)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcc----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence 566677888888888886654322100 1355666777888999998888888888899999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGN-YLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~-~lg~~l~~~~ 407 (449)
|++++|+++...++|. .+|+.+.+.+
T Consensus 139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 139 LSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999996 5777766544
No 166
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.51 E-value=0.0024 Score=67.15 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=83.0
Q ss_pred HHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHH
Q 013138 278 IFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357 (449)
Q Consensus 278 li~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il 357 (449)
.+..|+.+.+..++.+| +++++.+.++.++++++.+++++.+....- ..+.++.++...++
T Consensus 67 ~l~~~ig~~~~G~l~Dr-------~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~------------g~~a~~~l~~~R~l 127 (490)
T PRK10642 67 FLIRPLGGLFFGMLGDK-------YGRQKILAITIVIMSISTFCIGLIPSYATI------------GIWAPILLLLCKMA 127 (490)
T ss_pred HHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHH
Confidence 34456666655445555 667788999999999999988876322000 00112247788899
Q ss_pred HHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 358 ~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+|+|++...+....++.+..|++.||.++++......+|..+|+.+...+
T Consensus 128 ~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 128 QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888766544
No 167
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.0026 Score=64.57 Aligned_cols=113 Identities=20% Similarity=0.121 Sum_probs=95.2
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013138 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+++-++.+..+.+..|+...+ .+| +++++.+...++++.+|.++..+.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~l----t~r-------~~Rr~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALL----TGR-------LERRRLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hcc-------cchHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3556677777777777777763 333 444566777788888888888875
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.|++.+++.-++.|++-+..++....++.+.+|+++|++++|+.+....++..+|..+.+.+.+
T Consensus 99 p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 99 PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999998888765
No 168
>PRK03699 putative transporter; Provisional
Probab=97.49 E-value=0.0017 Score=66.14 Aligned_cols=86 Identities=9% Similarity=0.095 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..+.++.+++.+++.+. .++++++...++.|++.+...+.....+.+..|++.
T Consensus 69 ~g~r~~~~~~~~~~~i~~~l~~~~--------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~ 128 (394)
T PRK03699 69 IPLKRQLIFGFALMILAVAGLMFS--------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ 128 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch
Confidence 455567778888888888777653 456777888899999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+..+++.+...++|+.+++.+.+.+
T Consensus 129 r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 129 RGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887654
No 169
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.48 E-value=0.0016 Score=66.41 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
......+...++.|+... +.+| +++++.+.++.++.+++.+.+.+. .+.
T Consensus 43 ~~~~~~l~~~l~~~~~G~--------laDr---~grr~vl~~~~~~~~~~~~~~~~~--------------------~~~ 91 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGA--------FADS---FPKGRVMFIANGIKLLGCLLMLFG--------------------IHP 91 (393)
T ss_pred HHHHHHHHHHHHHhhhhH--------hhhc---cCCchhhHHHHHHHHHHHHHHHHH--------------------HHH
Confidence 334444444455555444 3343 566677888888887777655442 121
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+...+++|+++++..|...+++.+.+|+++|+++.|+.....++|..+|+.+.+.+.+
T Consensus 92 ---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 92 ---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999999999998886643
No 170
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.43 E-value=0.0042 Score=67.67 Aligned_cols=253 Identities=11% Similarity=-0.012 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cch-----
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGW----- 106 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~----- 106 (449)
.+...+.++.++++.++..++-..+.+++..+.++ +++.+..++|++..+.+.+ |.+++..+..... +..
T Consensus 82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~ 157 (654)
T TIGR00926 82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQ 157 (654)
T ss_pred chHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccC
Confidence 35566788889999999999999999999988762 4456799999999998875 7777777765443 221
Q ss_pred -hhh-HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCC
Q 013138 107 -GFG-IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTK 184 (449)
Q Consensus 107 -iF~-i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 184 (449)
.|. ..++.+++.++.++.....++..++.+.+.....++........+. +... .
T Consensus 158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-----------------------~~~~-~ 213 (654)
T TIGR00926 158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-----------------------RFST-R 213 (654)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-----------------------hhcc-C
Confidence 133 4445545555555555544443333322222233333222211000 0000 0
Q ss_pred ccchhhhhhhhhccccccccCCCC-ccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCce
Q 013138 185 DFSFFDKAAVEIQSDNIKESVNPW-RLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFK 263 (449)
Q Consensus 185 ~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~ 263 (449)
...|. ..+. ....+..+++++...+.+.++...+.+|+.+.+.......+..+.++..+ .+.
T Consensus 214 ~~~~~---------------~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~--~l~ 276 (654)
T TIGR00926 214 SEHWP---------------LHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG--DVG 276 (654)
T ss_pred Ccccc---------------hhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC--ccC
Confidence 00000 0000 01223334567889999999999999999999998999999988887754 443
Q ss_pred eCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013138 264 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 264 i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
..+.....++.+-.++..++...+.++++.++.++ ..+.+++.-+.+.++++.+.+...+......-
T Consensus 277 g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 277 GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678889999998888888888999998554 56788899999999999999998888777766
No 171
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.42 E-value=0.0011 Score=69.06 Aligned_cols=90 Identities=19% Similarity=0.142 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+.. ..+.++++...+++|++++...|....++.+..|+++
T Consensus 103 ~g~r~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~ 164 (465)
T TIGR00894 103 YVFKWSIGIGMFLSSVISIVIPWAA------------------GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE 164 (465)
T ss_pred hCcchhhHHHHHHHHHHHHHHHHHH------------------HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH
Confidence 5556677788877777766554321 1345678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|++++|+.+...++|..+++.+.+.+.+
T Consensus 165 r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 165 RSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887653
No 172
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.42 E-value=0.0046 Score=63.07 Aligned_cols=87 Identities=21% Similarity=0.103 Sum_probs=70.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+..... .+++.++...++.|++.+...+.....+.+..|++.
T Consensus 75 ~g~r~~l~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 75 IGRRPVMLAGVAFFILTCLAILLA--------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 455567778888888777766553 356777788899999999988988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++..+++......+|..+|+.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888877654
No 173
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.40 E-value=0.0014 Score=68.92 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=72.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++.+.+. .+.+.+....++.++|+++..|.....+.+..|+++
T Consensus 76 ~G~~~~l~~~~~~~~~g~~~~~~~--------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~ 135 (475)
T TIGR00924 76 WGTKKTMVLGGIVLMLGHFMLAMS--------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD 135 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc--------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence 466678889999999998877653 245566677788999999999999999999988764
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 ---RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ---~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.++++...++|..+|+.+.+.+.+
T Consensus 136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred cccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999887653
No 174
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.39 E-value=0.0063 Score=62.61 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+..|.++.+++.+..... .++++++...+++|++++...+.....+.+..|+++
T Consensus 78 ~Grr~~l~~~~~~~~~~~~~~~~a--------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~ 137 (413)
T PRK15403 78 IGRRPVLITGALIFTLACAATLFT--------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK 137 (413)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455567888888888887766653 577888889999999998777777777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+++++...++|..+|+.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 138 GIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877654
No 175
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.36 E-value=0.002 Score=68.14 Aligned_cols=88 Identities=7% Similarity=-0.012 Sum_probs=69.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh-
Q 013138 303 TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM- 381 (449)
Q Consensus 303 ~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~- 381 (449)
++++.+.+|.++.+++..++.+.. .+.+.+....+++++|.++..|....++.+..|++.
T Consensus 86 G~r~~~~~g~~~~~ig~~l~~~~~-------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~ 146 (500)
T PRK09584 86 GTKRVIMLGAIVLAIGYALVAWSG-------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP 146 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch
Confidence 666778899999988877766531 233445667788999999999998899999988654
Q ss_pred -HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 -RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 -~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++.+.++++...++|..+|+.+.+.+.+
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999887753
No 176
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.33 E-value=0.0024 Score=67.36 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++..++.+++.+.... ....+++.++...+++|++++...+....++.+..|++.
T Consensus 83 ~Grr~~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~ 148 (502)
T TIGR00887 83 LGRKRVYGMELIIMIIATVASGLSPGS--------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW 148 (502)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccCc--------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence 555667778888888877766553100 001236678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+++++.+....+|..+|+.+...+.
T Consensus 149 Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 149 RGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876553
No 177
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.30 E-value=0.0047 Score=61.79 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=65.9
Q ss_pred hHhhhhhhhhccCCCCCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013138 285 DRFIVPVTRKFTGHKNGLTQLQRMGI-GLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEV 363 (449)
Q Consensus 285 ~~l~~~~~~k~~~~~~~~~~~~~i~i-G~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~ 363 (449)
..+..|+..++.+| .++++.+.+ +.++.+++.+.+... .+++.++...++++.++.
T Consensus 46 ~~~~~~~~g~l~Dr---~g~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~ 102 (375)
T TIGR00899 46 GIAVSQLLATRSDY---QGDRKGLILFCCLLAALACLLFAWN--------------------RNYFLLLVLGVLLSSFAS 102 (375)
T ss_pred HHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHhhhh
Confidence 33334444444444 555555444 455555555544432 456666666677788887
Q ss_pred HHhhhhHHHHhhhcChhhHHHH--HHHHHHHHHHHHHHHhHHHhhhh
Q 013138 364 FTFIGQLEFFYEQAPDAMRSLC--SALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 364 l~~p~~~~~i~~~aP~~~~g~~--~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
...|...+.+.+..|++.|+.. .+......++|..+|+.+.+.+.
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~ 149 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA 149 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence 7888888888888888877654 57777777888888888877654
No 178
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.29 E-value=0.00072 Score=73.57 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=94.2
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 013138 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVRE---------- 335 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~---------- 335 (449)
.+++.+...+...+..++...+ .+| .++++.+.+|.++++++.++.++.+-....+..+
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 3556666666666666666663 333 3455678899999999999887654221000000
Q ss_pred --cCC-----------------CCCCCC--cchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013138 336 --HNY-----------------YDLPEM--PMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 336 --~~~-----------------~~~~~~--~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
+.. .|+++. ...+..+++..+++|+|++...+.+..++.+.+|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 011111 12345567888999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhc
Q 013138 395 LGNYLSSLLVTIVTS 409 (449)
Q Consensus 395 lG~~lg~~l~~~~~~ 409 (449)
+|..+|..+.+.+.+
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999887764
No 179
>PRK11043 putative transporter; Provisional
Probab=97.27 E-value=0.009 Score=60.76 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .++++++...+++|++.+...+.....+.+..|++.
T Consensus 68 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 127 (401)
T PRK11043 68 YGRKPVLLAGLSLFALGSLGMLWV--------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK 127 (401)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH
Confidence 555667788888887777766653 466777888899999998888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+.+..+...++|..+++.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 128 ANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899989888887664
No 180
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.26 E-value=0.0035 Score=62.28 Aligned_cols=85 Identities=20% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+.+.+. .+++.+....++.|++++...+.....+.+..| ++
T Consensus 65 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 123 (377)
T TIGR00890 65 FGPRAVAMLGGILYGLGFTFYAIA--------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK 123 (377)
T ss_pred cCccchhHHhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc
Confidence 455566788888888888777765 456777778889999999988888888877777 56
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.+++++....++|..+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 124 RGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred cHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 99999999999999988766665544
No 181
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.25 E-value=0.0061 Score=70.81 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=73.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.++.++.+++.+...+.... .+++++++..+++|++.++..|...+++.+.+|++.
T Consensus 74 ~grk~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 136 (1146)
T PRK08633 74 FSKNRVIRIVKLFEVGLTLLIVLAYYL-----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN 136 (1146)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc
Confidence 566666777766655555444332111 357788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.++|+.....++|..+|+.+.+.+..
T Consensus 137 r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 137 LSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887754
No 182
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.23 E-value=0.0069 Score=61.82 Aligned_cols=85 Identities=12% Similarity=-0.070 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHH
Q 013138 307 RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCS 386 (449)
Q Consensus 307 ~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~ 386 (449)
.+.++.+++++++..+.+... ..++|.+....++.++......|+..+++.+..|+++|+.+.
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~ 132 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCPP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGA 132 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence 467777777777777665421 145676777777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhh
Q 013138 387 ALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 387 gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.....++|..+++.+...+.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999988777654
No 183
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.21 E-value=0.0042 Score=65.23 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.++..+. .+.+.++...++.|++++... +....+.+..|++.
T Consensus 98 ~G~r~~~~~~~~~~~~~~~~~~~~--------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~ 156 (476)
T PLN00028 98 YGPRYGSAFLLMLTAPAVFCMSLV--------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI 156 (476)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh
Confidence 455667778888887777766653 356666677788999998654 45567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.++|+.+...++|..+++.+...+
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888776666544
No 184
>PRK09952 shikimate transporter; Provisional
Probab=97.20 E-value=0.0023 Score=66.39 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred HHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHH
Q 013138 278 IFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFL 357 (449)
Q Consensus 278 li~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il 357 (449)
.+..|+.+.+..++.+| +++++.+.++.++.+++.++.++.+..... .-.+++.++...++
T Consensus 74 ~~~~~~g~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~R~l 134 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDR-------LGRKRMLMLTVWMMGIATALIGLLPSFSTI------------GWWAPVLLVTLRAI 134 (438)
T ss_pred HHHHhhHHHHHHHHHHh-------hccHHHHHHHHHHHHHHHHHHhcCCcHHHH------------HHHHHHHHHHHHHH
Confidence 34456666655555555 566778888999999888887765221000 00112346777899
Q ss_pred HHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 358 IGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 358 ~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+|++++...|....++.+..|++.||.+++..+....+|..++..+...+.
T Consensus 135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877665543
No 185
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.20 E-value=0.0044 Score=61.88 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=77.5
Q ss_pred hHhhhhhhhhccCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 013138 285 DRFIVPVTRKFTGHKNGLTQLQR-MGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEV 363 (449)
Q Consensus 285 ~~l~~~~~~k~~~~~~~~~~~~~-i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~ 363 (449)
..++.|+.+|+..| .+++++. +..+.++.++++..+.+... ..+.+++....++.+++..
T Consensus 38 ~~~~g~~~Dr~~~~--~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----------------~~~l~~l~~~~~~~~~~~~ 98 (356)
T TIGR00901 38 KFLWSPLVDTVYLP--FFGRRRSWLVLTQVLLLSLLLILSFLVP-----------------STDLPLLAGLAFLIAFFSA 98 (356)
T ss_pred HHHHHHHHhcccCC--CCCccHHHHHHHHHHHHHHHHHHHcCCc-----------------chhHHHHHHHHHHHHHHHH
Confidence 44445556665322 1455554 45667777777666655421 1456667777778888888
Q ss_pred HHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 364 FTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 364 l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
...++..+++.+.+|+++|+.+.|+.....++|..+++.+.+.+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 99 TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999998876653
No 186
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.19 E-value=0.0085 Score=62.38 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++++++.+..++.+..... ...+....++.++...+++|++.+...|....++.+..|++.
T Consensus 82 ~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 82 FGRRDSLKIAAVLFFISALGSAWPEFGFTS--------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhcccccc--------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 556677888888888877766542110000 000111334567788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.+++++.....+|..+++.+...+
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886655443
No 187
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.17 E-value=0.011 Score=59.94 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+... .+++.++...++.|++.+...+...+...+..|++.
T Consensus 70 ~grr~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T PRK11652 70 VGRRPVILVGMSIFILGTLVALFA--------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ 129 (394)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH--------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 555667788888888877766543 456778888899999999888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+.+.++....+|..+|+.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887664
No 188
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.16 E-value=0.0048 Score=65.10 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+.+|.++++++.+.+.+.. .+...+....+++++|+++..|....++.+..|++.
T Consensus 78 ~G~r~~~~~g~~~~~~g~~~~~~~~-------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 78 LGTKRTIVLGAIVLAIGYFMTGMSL-------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc-------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 4667789999999999998877631 112224467788999999999999999999998874
Q ss_pred --HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 --RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 --~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+.+.+.+.+..++|..+|+.+.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999998887753
No 189
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.12 E-value=0.018 Score=61.18 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=87.6
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+.......+..+++.++...+. +| ++.++.+...-++.++..+.+.++... ...
T Consensus 48 alv~~a~~LP~~Llsl~aG~la----Dr-------~drrrili~~~~~~~~~~~~L~~l~~~---------------~~~ 101 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALA----DR-------FDRRRILILSQLLRALVALLLAVLAFF---------------GLL 101 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hc-------ccchHHHHHHHHHHHHHHHHHHHHHHh---------------CcC
Confidence 3455666666677777666643 33 444556666666666555554443221 126
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+.|.++...++.|++..+..|..++.+-+.+|+++...+.+++.+..+++..+|+++.+.+..
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 788888888999999999999999999999999999999999999999999999998887653
No 190
>TIGR00898 2A0119 cation transport protein.
Probab=97.11 E-value=0.0043 Score=65.26 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=72.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+...+. .+++.++...++.|++.+...+....++.+..|++.
T Consensus 154 ~Grr~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~ 213 (505)
T TIGR00898 154 FGRKKVLLLSTLVTAVSGVLTAFS--------------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ 213 (505)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHc--------------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh
Confidence 555567778888887777766653 467888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+.++++......+|..+++.+...+
T Consensus 214 r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 214 RAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998887765544
No 191
>PTZ00207 hypothetical protein; Provisional
Probab=97.10 E-value=0.01 Score=63.80 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++++++.+.... ....++|.+.+..++.|+|++...+.....+.+..| +.
T Consensus 88 ~G~R~vllig~ll~~iG~ll~ala~~~--------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 88 LGPRPIFVLSMTVFCLGTLLFALTFQE--------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcc--------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 678889999999999999888764110 011478888888999999999999998889999887 67
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.++|+.....++|+.+.+.+...+
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998655555533
No 192
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.10 E-value=0.0027 Score=63.52 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=76.4
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHH
Q 013138 292 TRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLE 371 (449)
Q Consensus 292 ~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~ 371 (449)
..++.+| +++++.+.++.++.+++.+++.+.+... .......+.++...+++|++.+...+....
T Consensus 55 ~G~l~dr---~g~r~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~ 119 (394)
T TIGR00883 55 FGHFGDR---IGRKKTLVITLLMMGIGTLLIGLLPSYA------------TIGIWAPILLLLARLIQGFSLGGEWGGAAL 119 (394)
T ss_pred hhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhCCChh------------hhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 3444444 6777788899888888887776642110 000011234677779999999999999999
Q ss_pred HHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 372 FFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 372 ~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++.+..|+++|+++++.......+|..+++.+...+.
T Consensus 120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 120 YLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766543
No 193
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.10 E-value=0.012 Score=60.79 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=80.7
Q ss_pred HHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHH
Q 013138 279 FWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLI 358 (449)
Q Consensus 279 i~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~ 358 (449)
+..|+.+.+..++.+| +++++.+.++.++++++.+...+.+... .-...+...++...+++
T Consensus 74 ~~~~ig~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~R~l~ 134 (432)
T PRK10406 74 LMRPIGGWLFGRIADK-------HGRKKSMLISVCMMCFGSLVIACLPGYE------------TIGTWAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHHHHHHHhhcCCch------------hHHHHHHHHHHHHHHHH
Confidence 3344555544444454 6677888999999988888876642110 00002345678888999
Q ss_pred HHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 359 GCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 359 glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
|+|++...|....++.+..|+++||+++++.......|..++..+...+
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888887665444
No 194
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.08 E-value=0.019 Score=60.54 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHhHhhhhhhhhccCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013138 283 IYDRFIVPVTRKFTGHKNGLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 283 l~~~l~~~~~~k~~~~~~~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
+...++.|+.+|+... .++.++ .+.++.++.+++...+++..+ ..+++++....++.+++
T Consensus 60 ~~~~l~gpl~Dr~~~~--~~Grrr~~ll~~~i~~~~~~~~~a~~~~-----------------~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 60 VFKFLWSPLMDRYTPP--FLGRRRGWLLATQLLLLVAIAAMGFLEP-----------------GTQLRWLAALAVVIAFC 120 (491)
T ss_pred HHHHHHHHHHHccccc--CCCCchHHHHHHHHHHHHHHHHHHHcCC-----------------cchHHHHHHHHHHHHHH
Confidence 4455556666664211 024444 366777777777777666421 14677888888899999
Q ss_pred HHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 362 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++..+++.+..|+++|+.+.++......+|..+++.+...+.
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776654
No 195
>PRK15075 citrate-proton symporter; Provisional
Probab=97.00 E-value=0.01 Score=61.23 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=77.0
Q ss_pred HHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 013138 282 PIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCA 361 (449)
Q Consensus 282 pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glg 361 (449)
|+.+.+..++.+| +++++.+..+.++.+++.+.+.+.+... ... ......++...+++|++
T Consensus 70 ~ig~~~~G~l~Dr-------~Grr~~l~~~~~~~~~~~~l~~~~~~~~-~~~-----------~~~~~~l~~~R~l~G~~ 130 (434)
T PRK15075 70 PLGAIVLGAYIDR-------VGRRKGLIVTLSIMASGTLLIAFVPGYA-TIG-----------LAAPLLVLLGRLLQGFS 130 (434)
T ss_pred hhHHHHHHHHhhh-------hchHHHHHHHHHHHHHHHHHHHhCCcHH-HHH-----------HHHHHHHHHHHHHhhcc
Confidence 4445544444555 5666788889988888888777642110 000 00011356677899999
Q ss_pred HHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 362 EVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 362 e~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++...+....++.+..|++.||.++++.....++|..+|+.+...+.
T Consensus 131 ~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred ccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999988888887777666543
No 196
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.00 E-value=0.0075 Score=60.23 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=75.7
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
...++.+...+..++...+ .+| +++++.+.+|.++.+++.+.. .. .+.
T Consensus 40 ~~s~~~~~~~~~~~~~g~l----~dr-------~g~r~~~~~~~~~~~~~~~~~-~~--------------------~~~ 87 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWL----ARR-------FGEERSVAAGLLLIAAGILIR-SA--------------------PGT 87 (355)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHH-------hCchHHHHHHHHHHHHHHHHH-Hh--------------------ccH
Confidence 3444444445555554442 333 455567888888777776654 21 355
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.++...++.|+|.+...+.....+.+..| ++|++++++.+...++|..+++.+...+.
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777889999999988877777777776 58999999999999999999888776553
No 197
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.98 E-value=0.011 Score=68.76 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++|+++...+++|+++.+..|...+++.+..|++.++.++|+.+...++|..+|+.+.+.+..
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999997754
No 198
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.96 E-value=0.012 Score=59.54 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.++++++...++.|+|++. .++....+.+..|+++|++++++.+....+|..+++.+...+.
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~ 138 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY 138 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999996 4566667789999999999999999999999999988877664
No 199
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.024 Score=59.67 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcccccCCCcCC
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSISTKNGNLGW 419 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~~~~~~~~~~ 419 (449)
.|.+.++...+++|+.|...+|....+..+--.++++|..+|+|+...++|+++|+.+...+.+..+..+..+|
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 46788888899999999999999999999999999999999999999999999999999886554444444444
No 200
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.86 E-value=0.03 Score=49.54 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=69.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++-+.+|.++.++=...... .+.+.+++.-++.|+|..+.+...-.++.+.+.++.
T Consensus 64 lg~K~sm~lg~~~y~~y~~~~~~---------------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 64 LGPKWSMILGSLGYAIYIASFFY---------------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 56777888887776543332221 345678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++.+|+++...+.+..+|+.+.-.+-
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987766553
No 201
>PTZ00207 hypothetical protein; Provisional
Probab=96.84 E-value=0.16 Score=54.72 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHH-Hhhhhheeccccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALI-ASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~i-Gp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++.+.+.|+|.+.+.+.....+.++|| ++ |+++.++.....++|+++ +++..+++. .+|++.|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHH
Confidence 467889999999999999999999999999997 44 899999999999999975 666666665 36777777
Q ss_pred HhHHHHH
Q 013138 110 IPAVAMA 116 (449)
Q Consensus 110 i~~~~~~ 116 (449)
+.++..+
T Consensus 189 ~l~vl~~ 195 (591)
T PTZ00207 189 FLMSFAL 195 (591)
T ss_pred HHHHHHH
Confidence 6554433
No 202
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.83 E-value=0.0076 Score=62.81 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=89.2
Q ss_pred CceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 013138 261 SFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYD 340 (449)
Q Consensus 261 g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~ 340 (449)
+.++..+...+++-..=+++.+...+ +.+| .+....|.+|+.+.++=++.++++
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~k----lI~k-------iGHv~v~~lgLa~~~~Rf~~~S~L--------------- 456 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFK----LIEK-------IGHVNVMYLGLACNVGRFLYYSYL--------------- 456 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHH----HHHH-------hcccceeeehhhHHHHHHHHHHHh---------------
Confidence 45555555666665555555555444 3444 566678889999999988888887
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhhhc
Q 013138 341 LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIVTS 409 (449)
Q Consensus 341 ~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~~~ 409 (449)
.|.|..++..+++|+.-++++....+++...+|++++..++|+..... ++|..+|+.+.+.+.+
T Consensus 457 -----~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 457 -----QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred -----cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 577777777799999999999999999999999999999999977654 6677777666665543
No 203
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.82 E-value=0.0011 Score=68.17 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHH-HHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW-FYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~-~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
+.+.+++...+.+++.+...+.....+.+.+|++. |+..++. +....++|..+||.++|++.+..||+..|++
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 45667777888888888888888888899998765 7777655 6678899999999999999999999999997
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
.+...++..+.
T Consensus 388 ~~~~~~i~~~~ 398 (420)
T PRK09528 388 LGGIVLLFTLI 398 (420)
T ss_pred HHHHHHHHHHH
Confidence 66555444433
No 204
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=96.78 E-value=0.015 Score=61.20 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=65.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChh--
Q 013138 303 TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA-- 380 (449)
Q Consensus 303 ~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~-- 380 (449)
++++.+.+|.++++++.+++...+ .+.........+..+|.++..+...+++.+..|++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~ 134 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP 134 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence 556678899999888877554321 11122344445666777777787788899999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 381 MRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 381 ~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.|....+++....++|+.+++.+.+.+.
T Consensus 135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999988775
No 205
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.78 E-value=2.1e-06 Score=88.85 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc---cccchhh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN---EGWGWGF 108 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~---~gw~~iF 108 (449)
+.+.+.+++.++|+|.|+..+....++.+..|++. |++..++......+|.+++..++-.+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 78889999999999999999999999999999887 99999999999999999998876555443 3499999
Q ss_pred hHhHHHH
Q 013138 109 GIPAVAM 115 (449)
Q Consensus 109 ~i~~~~~ 115 (449)
++..+..
T Consensus 175 ~~~~~~~ 181 (451)
T PF00083_consen 175 IFGAIPS 181 (451)
T ss_pred ccccccc
Confidence 8766443
No 206
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.72 E-value=0.0021 Score=66.81 Aligned_cols=70 Identities=6% Similarity=0.028 Sum_probs=56.7
Q ss_pred CCCCCcchHHHHHHH-HHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 340 DLPEMPMSIMWQVPQ-YFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 340 ~~~~~~~s~~~li~~-~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|+....++.+.++.. .++.|++..++..+..++-.+..-+..+|.++++..+....+..+|+.+.+..-.
T Consensus 379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 344445666555555 4678999999999999999999999999999999999999999999887775543
No 207
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.72 E-value=0.061 Score=56.44 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhHhhhhhhhhccCCC-CCCCchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHH
Q 013138 274 TLSVIFWVPIYDRFIVPVTRKFTGHK-NGLTQLQRMGI-GLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQ 351 (449)
Q Consensus 274 ~~~ili~~pl~~~l~~~~~~k~~~~~-~~~~~~~~i~i-G~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 351 (449)
...+....|+...+..|+.+.+.+|- .++++++.+.+ |....+++++++.+.........+. . .+.......+..
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~--~-~~~~~~~~i~~~ 117 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN--L-DKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc--c-cccchhHHHHHH
Confidence 33334444444444444444443310 01455555444 5666667766666543210000000 0 000111233455
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhH--HHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMR--SLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~--g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+....+..++.....++..+++.+.+|+++| +.+.+....+.++|+.+|..+.+..
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788888889999999999999976 6799999999999999998887754
No 208
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.65 E-value=0.0037 Score=65.63 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=77.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
.+.+.|++.-++.|+..|...+...++.++..|+++ .+..|++|....-..+.+||++.|.+.+..+ .|+.|+
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 455668888889999999999999999999999987 7999999999999999999999999988775 889888
Q ss_pred HhHHHHHHHHHHHHh
Q 013138 110 IPAVAMAIAVVSFFS 124 (449)
Q Consensus 110 i~~~~~~l~~i~~~~ 124 (449)
...+.++++++.+..
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776543
No 209
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.57 E-value=0.067 Score=54.41 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhH--HHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMR--SLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~--g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++++.....+.+.......|...+++.+..|++.| +.+.+..+...++|..+|+.+.+.+.
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~ 167 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA 167 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455544444455555556678877777776666544 55668888888999999998888664
No 210
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.059 Score=54.50 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.+.+.-+.+|+.++++++.+..-.... .++...+...++.+.|.++.-.+.+.++...-|++.
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~-----------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS-----------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh-----------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 677788999999999999887643222 455567778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..+-+++....+++|..+|+.+++.+..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999986653
No 211
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.023 Score=59.47 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.++.+..+.++.+++.++...... .+.+.++...+++|++++..+|....+..+-+|+++
T Consensus 100 ~G~r~v~~~~~~~sa~~t~l~P~aa~------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 100 FGARRVFFISGLISALLTLLTPLAAS------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 67778899999988888877766532 455677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
|++..++.....++|.+++-.+.+.+.+.
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCES 190 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999999999999899877653
No 212
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.41 E-value=0.033 Score=57.01 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+......++|..+.-..|.+.|+..+..=|...+..+|+.++..++=+.+-..+.+...
T Consensus 361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~ 419 (480)
T KOG2563|consen 361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILA 419 (480)
T ss_pred ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHh
Confidence 44455567788888888999999999999999999999988887776666656555443
No 213
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.39 E-value=0.032 Score=57.22 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++....+...+.+|+...+.+|-+ +++. +..+.+|..+.+++++.+...... ....
T Consensus 32 ~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~--------------~~~~ 97 (437)
T TIGR00792 32 LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF--------------SATG 97 (437)
T ss_pred CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44445566666666777777777666655411 1333 234677878888777766543100 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
..+|++..+++.+++..+..++..+...+.. |+++|++..+..+....+|..+++.+...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999988888888877 578999999999999999888877665544
No 214
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.34 E-value=0.006 Score=61.86 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+.+++...+.|+..|...|....++.+. |+++ |++..+++. ....+|..+||.++|++.+++|+ ..|+
T Consensus 291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 4567778888999999999999999999987 7665 788899886 56789999999999999999996 5577
Q ss_pred HhHHHHHHHHHH
Q 013138 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+.+...+++++.
T Consensus 363 ~~~~~~~~~~~~ 374 (382)
T TIGR00902 363 FMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHH
Confidence 665544455443
No 215
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.8 Score=47.69 Aligned_cols=128 Identities=9% Similarity=0.001 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCcc
Q 013138 268 SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP-EMPM 346 (449)
Q Consensus 268 ~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (449)
.+.+++.+.+.+...+++..+.++.+| .++ ++....+.+|.++..+++++...-.+...+ -..+++++ ....
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~r-ir~---fg~~~~~~~~~~~~~~~~~li~l~~p~dap---~~~t~~~~~~~~~ 351 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKR-IRG---FGRKPTVLIGIIIHLIGFLLIHLSFPNDAP---LRPTDSPPLLFTP 351 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhh-hhh---cccCcchhHHHHHHHHHHHHHhccccccCC---CCCCccccccccc
Confidence 367777777777777766655554444 333 677778888888877777655443221000 00111111 1122
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHH
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLL 403 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l 403 (449)
+.....+..+++|+++.+.....+.++.... ++.+..+.+++-+-.++++.++...
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566678999999999999999999999 6777788888888888877665443
No 216
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.09 E-value=1.7 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+.|.+....+..|+-.|..++.....+.++.|+++|-.++|...+.-++|-.+++.+...++
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356666677788999999999999999999999999999999999999999999988776554
No 217
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.08 E-value=0.041 Score=58.30 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=72.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
++.+..+.++.++..+|.++.++. .++++++...++.|+|.++.......++.+.+|++.
T Consensus 116 ~GRk~~l~~~~~~~~iG~ii~~~a--------------------~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~ 175 (513)
T KOG0254|consen 116 IGRKKTLLLAVVLFLIGAIIIALA--------------------PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI 175 (513)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh
Confidence 455567888999999999888875 478899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 013138 382 RSLCSALSLTTVALGNYLSSL 402 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~ 402 (449)
||...++.++...+|..+|..
T Consensus 176 RG~l~~~~~l~~~~Gi~~~~~ 196 (513)
T KOG0254|consen 176 RGTLVSLYQLFITIGILLGYC 196 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988833
No 218
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.03 E-value=0.01 Score=59.49 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=77.2
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 013138 290 PVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQ 369 (449)
Q Consensus 290 ~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~ 369 (449)
|.++++.++ .+.+..+.+|....++++++.+.. .++..++.+-++.|+.-+.+.+.
T Consensus 86 ~~~G~~SD~---yGRkpvll~c~~~va~s~ll~~~S--------------------~~F~afv~aR~l~Gi~kgnl~v~- 141 (451)
T KOG2615|consen 86 PLWGCLSDR---YGRKPVLLACLIGVALSYLLWALS--------------------RNFAAFVLARFLGGIFKGNLSVI- 141 (451)
T ss_pred hhhhhhhhh---hCchHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhhhccCchHHH-
Confidence 334444444 555668888888888877776653 45656777789999999888876
Q ss_pred HHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 370 LEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 370 ~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
-+++.+.++++.|+.+++..+..+++|-.+||++++.+..
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5799999999999999999999999999999999998765
No 219
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.01 E-value=0.0013 Score=69.96 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=3.0
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----h-----h--
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV----R-----E-- 335 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~----~-----~-- 335 (449)
+++.+.+-+..++...+..++ .+| .+..+.+++|.+++++|.++++.-+-....+. . +
T Consensus 41 G~i~s~~di~~~~~~~~vsy~----g~~-------~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYF----GGR-------GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhh-------cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 344444444445555444542 222 23446789999999999998876544311110 0 0
Q ss_pred cCCCC-------------------CCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHH
Q 013138 336 HNYYD-------------------LPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALG 396 (449)
Q Consensus 336 ~~~~~-------------------~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG 396 (449)
+...| ++.....++.+++..++.|+|..-.++.+.+++-++++++..+.+.|+.+.++.+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 00001 01222345678889999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhc
Q 013138 397 NYLSSLLVTIVTS 409 (449)
Q Consensus 397 ~~lg~~l~~~~~~ 409 (449)
..+|-.+.+.+.+
T Consensus 190 Pa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 190 PALGFLLGSFCLR 202 (539)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999777776654
No 220
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.88 E-value=0.089 Score=53.41 Aligned_cols=56 Identities=7% Similarity=-0.035 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.....++.+++.....|...+++.+..++ ++...|......++|..+|+.+.+.+.
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 45556778888888888887777665433 345556666777888888888776553
No 221
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.84 E-value=0.012 Score=59.64 Aligned_cols=77 Identities=22% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHH
Q 013138 39 ALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIA 118 (449)
Q Consensus 39 ~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~ 118 (449)
...+.+++.|...+...+...+..++++ ++++.+++.....++|..+||.++|++.+..||+..|++.....+++
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3344456667777778888777776532 28999999999999999999999999999999999999876655544
Q ss_pred HH
Q 013138 119 VV 120 (449)
Q Consensus 119 ~i 120 (449)
++
T Consensus 384 ~~ 385 (390)
T TIGR02718 384 IL 385 (390)
T ss_pred HH
Confidence 43
No 222
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.78 E-value=0.15 Score=54.78 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=76.9
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
.|+...+.+...+..|+.++ +.+. ++++..+.+|.++..+|+++.+.. .
T Consensus 81 ~w~~~~~~l~~av~~~~~G~--------LSDl---fGRr~~~i~g~~l~vvG~Iv~atA--------------------~ 129 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGR--------LSDL---FGRRYFFIIGSLLGVVGSIVCATA--------------------Q 129 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHH--------HHHH---hcchHHHHHHHHHHHhHHHHhhcC--------------------C
Confidence 34555555554444455444 4444 666778899999999999988754 5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
++..++...++.|+|.+..... ...+.+.+|.+.|+...++.....-+....|+.+.+.+
T Consensus 130 ~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 6677899999999998777754 45689999999998888777665555555565655543
No 223
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.03 Score=59.25 Aligned_cols=111 Identities=10% Similarity=0.122 Sum_probs=90.1
Q ss_pred cccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013138 266 PASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 266 ~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
.+|+.++.....++..|+...+ .+| ++-+..+.+|.+++++|++...+.
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l----~~r-------fg~R~v~i~G~~v~~~g~~lssF~-------------------- 131 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSAL----CNR-------FGCRTVMIAGGLVAALGLLLSSFA-------------------- 131 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHH----Hhh-------cCchHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5677888888888888887763 444 567789999999999999999986
Q ss_pred chHHHHHHHH-HHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 346 MSIMWQVPQY-FLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 346 ~s~~~li~~~-il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
.++|.+++.+ ++.|+|.++.+.+....+. .-.++.|+.++|+.....++|..+=+.+...+.
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 5677766666 8899999999988776665 667788999999999999998888777777554
No 224
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.041 Score=56.53 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++.+--..|+.++++-++.+++.-. +. .......+..-+.+-+++---+.+.-.+..+..|.+.
T Consensus 375 iGRk~iq~~GF~~~~i~~~~~~~~y~-------------~~--~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 375 IGRKYIQLMGFFIMTIFFFVIAGPYN-------------QL--ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred hhhHHHHHhhHHHHHHHHHHHcCCcc-------------cc--cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 45556667899999888887775310 00 0111112222233333433333445556788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
||++-|++-...-+|..+|....+...+
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~ 467 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTD 467 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence 9999999999999999999888776653
No 225
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.18 Score=52.90 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=75.4
Q ss_pred HHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHH
Q 013138 281 VPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGC 360 (449)
Q Consensus 281 ~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~gl 360 (449)
..+...+..++.+|++ ++.-+.+..++..++.+++...... .+...++...++.|+
T Consensus 73 ~~~Gs~~~~~la~~~G-------RK~~l~~~~~l~~~~~~~~~~s~~~-----------------~~~e~li~GR~i~Gl 128 (485)
T KOG0569|consen 73 GMIGSFSSGLLADRFG-------RKNALLLSNLLAVLAALLMGLSKSA-----------------PSFEMLILGRLIVGL 128 (485)
T ss_pred HHHHHHHHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHH
Confidence 3445555555566644 3345566666666665555543222 466788999999999
Q ss_pred HHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013138 361 AEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 361 ge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
..++.....--++.+.+|++.||.+..+..+...+|..+|..+..
T Consensus 129 ~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 129 ACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999998855543
No 226
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.38 E-value=0.024 Score=58.22 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHH-HHHHHHHHhhhhheeccccccc------hhhh
Q 013138 37 FVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFS-INIGALIASSVLVWIQDNEGWG------WGFG 109 (449)
Q Consensus 37 ~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~-~niG~~iGp~lgg~L~~~~gw~------~iF~ 109 (449)
.++..+.|+..|.+.+....++.+..|++. |+++.+++... ..+|..+|..++|++.|++|-+ ..|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334457899999999999999999999887 89999998875 5799999999999999987655 4445
Q ss_pred HhHHHHHHHHHHHHh
Q 013138 110 IPAVAMAIAVVSFFS 124 (449)
Q Consensus 110 i~~~~~~l~~i~~~~ 124 (449)
++++..++..+.+++
T Consensus 379 v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 379 VFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555544444444443
No 227
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=95.24 E-value=0.55 Score=47.79 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=77.2
Q ss_pred hhhhhhhccCCCC-C--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH--HHHHHHHHHHHHH
Q 013138 288 IVPVTRKFTGHKN-G--LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM--WQVPQYFLIGCAE 362 (449)
Q Consensus 288 ~~~~~~k~~~~~~-~--~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~il~glge 362 (449)
..++...+.++++ . ++...-+..|.++.+.+..++.+.-..-. +..++.+.+...+ ...+.+++.|+|.
T Consensus 30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~------~~~~~~~~~~~~g~~~a~l~F~l~G~G~ 103 (403)
T PF03209_consen 30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA------ESGQQSSGPFWLGLALAALAFLLYGLGV 103 (403)
T ss_pred HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc------ccccccccccHHHHHHHHHHHHHHHhhH
Confidence 3444555444432 0 12333456777777777666554433210 0000111112222 3566778899999
Q ss_pred HHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 363 VFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 363 ~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.....+.++.+.+.+|++.|+++.++-+.+.-+|..+++.+.+.+.+
T Consensus 104 ~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 104 HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999886653
No 228
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.098 Score=53.14 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=80.0
Q ss_pred eCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 013138 264 IPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPE 343 (449)
Q Consensus 264 i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~ 343 (449)
+..++...+.+..++....+ -.....+.+| +++++...++.+++.+-++.+.+....
T Consensus 46 LS~~q~~ll~aiPil~Gall-Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~~--------------- 102 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALL-RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVTY--------------- 102 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHH-HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHccC---------------
Confidence 66666666666666554433 1112223333 788888999999999999988886422
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013138 344 MPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 344 ~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.+.|+++..-++.|++.+-... +...+.+--||+++|.++|++. ..|+|..+...+.-
T Consensus 103 --~~~~~ll~~gll~G~~GasFav-~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P 160 (417)
T COG2223 103 --PSTWQLLVIGLLLGLAGASFAV-GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP 160 (417)
T ss_pred --CchHHHHHHHHHHhcccceehc-ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence 5557788888888888765544 4668899999999999999998 66666655544433
No 229
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.11 E-value=0.28 Score=51.32 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=84.4
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++...+.++....+++.+.+|+++.+.+|.+ +++. +..+.+|...+++++.++.... . -+...
T Consensus 39 ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p-~-------------~~~~~ 104 (473)
T PRK10429 39 LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH-L-------------FEGTA 104 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC-C-------------CCccH
Confidence 45555566666677888888888776665421 1344 4456678777778776554310 0 00112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.++|+.+.+++..++..+..++..+...+.+ ++++|...++.-....++|+.+.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~ 164 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888899999999999999999999 6999999998867777777666655443
No 230
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.11 E-value=0.21 Score=50.57 Aligned_cols=62 Identities=10% Similarity=-0.213 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.++|.+....++.+++.....|...+.+.+. ++++++..+......++|..+|+.+.+.+.+
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777888998888888776666554 4557788888888888999999888886643
No 231
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=94.99 E-value=1.6 Score=44.17 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchh
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWG 107 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~i 107 (449)
+.+.++..+.+.+.+.++|-|+ .|...++-....|... |..-.-.. .-..+|.++...+.=.+..++||||-
T Consensus 161 ~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~ 232 (528)
T KOG0253|consen 161 GASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYL 232 (528)
T ss_pred cCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3446777889999999999999 9999999988888765 55444444 55677888877776556667899986
Q ss_pred hhH-hHHHHHHHHHHHHh
Q 013138 108 FGI-PAVAMAIAVVSFFS 124 (449)
Q Consensus 108 F~i-~~~~~~l~~i~~~~ 124 (449)
... ..+.++.+...++.
T Consensus 233 l~~~~~pl~~~a~f~~w~ 250 (528)
T KOG0253|consen 233 LFTSSTPLMFAARFLVWV 250 (528)
T ss_pred HHHHHhHHHHHHHHHhhc
Confidence 553 44555444444443
No 232
>PRK11462 putative transporter; Provisional
Probab=94.64 E-value=0.41 Score=50.05 Aligned_cols=124 Identities=10% Similarity=0.009 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++.-.+.+++..-+++-+.+|+++.+.+|.+ +++. +..+.+|...+++++.++...... +...
T Consensus 42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~--------------s~~~ 107 (460)
T PRK11462 42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL--------------SMNG 107 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44555566666666777788887766655422 1333 345667877888887665542100 0112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSLLVTI 406 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-~~~~g~~~gl~~~~~~lG~~lg~~l~~~ 406 (449)
...|+...+++..++.-+...+..+.....++ +++|+..++.......+|..+++.+...
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p 168 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP 168 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25678888899999999999999999999998 8899999999999999888887776543
No 233
>PRK09669 putative symporter YagG; Provisional
Probab=94.31 E-value=0.39 Score=49.66 Aligned_cols=123 Identities=10% Similarity=-0.005 Sum_probs=81.2
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++...-+++.+.+|++..+.+|-+ +++. +..+..|.+..++++.++...... +...
T Consensus 42 ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~--------------~~~~ 107 (444)
T PRK09669 42 LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF--------------GATG 107 (444)
T ss_pred CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC--------------Ccch
Confidence 44445555666666677777777766665521 1333 334556767777776554432100 0113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc-ChhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA-PDAMRSLCSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~a-P~~~~g~~~gl~~~~~~lG~~lg~~l~~ 405 (449)
..+|....+++.+.+..+..++..+...+.. ++++|+..++.-.....+|+.+++.+..
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888877 5688998888888888888888776544
No 234
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.30 E-value=0.1 Score=56.90 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=78.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH----HHHHHh-----hcC-------------CCCC---------CCCcchHH-HH
Q 013138 304 QLQRMGIGLFISILSMIAAAVLELI----RLRMVR-----EHN-------------YYDL---------PEMPMSIM-WQ 351 (449)
Q Consensus 304 ~~~~i~iG~~l~ai~~l~l~~~~~~----~~~~~~-----~~~-------------~~~~---------~~~~~s~~-~l 351 (449)
..+.+++|.++++++.++.++-+.. .++... ++. ..|. ..+...+| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 3457899999999999988876443 111110 000 0010 01112233 57
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
+...++.|+|+...++.+.+++-+.+-++..+.+.|+.+.++.+|-++|-.+.+...+
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999999999888887765
No 235
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.15 E-value=0.45 Score=49.77 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=82.9
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++..+...+...++.|+.+.+ ..|. -+.++.+..|.+++++|.++...++.. +.
T Consensus 74 G~viaa~slg~~i~~liF~~W--------s~k~--~~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~ 127 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW--------SNKT--GSVKKPLIVSFLIAIIGNLLYLALAYV----------------PN 127 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc--------cccc--CCcccCHHHHHHHHHHHHHHHHHHHhc----------------cc
Confidence 344455666666666666652 2221 234677899999999999988777643 12
Q ss_pred -hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 347 -SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 347 -s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
..|++....++.|+|.+-....- .++...+-.++|.++++.....+.+|..+|+.+...+...
T Consensus 128 ~~~y~mL~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 128 GVKYLMLVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred chHHHHHHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 67889999999999966655443 4666666667777888888888888888888888777654
No 236
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=93.93 E-value=0.48 Score=50.11 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=84.5
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
...+.....++...++..+..++-++ ++++..+..++++..++-+..++. .++
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~-------~GRk~~~~~~~~~~~i~~~~~a~a--------------------~~~ 171 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDR-------FGRKPVLLVSLLLFIIFGILTAFA--------------------PNY 171 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhh-------cccHHHHHHHHHHHHHHHHHHHHh--------------------CcH
Confidence 33444444455555556555555555 455567778888777777666664 688
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+.+++..++.|++..-.......++.+..+++.|+.++.+ ......++.+++++.+.+.
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 7777777777777776554
No 237
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=93.78 E-value=0.55 Score=47.11 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=72.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++.+.+..++++.++|.++=.. .+.+.+.....+.|.|....++..-+++-++-|++
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~---------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~- 131 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSL---------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR- 131 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-
Confidence 78888889999988888776544 24567888889999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+.++|+|....++|..+++.+.--+.+
T Consensus 132 ~~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 132 VGLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred hhhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 5789999999999999999888765554
No 238
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.30 E-value=0.19 Score=51.77 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=93.0
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++...+.+.+..++++.+.+|+.+.+.+|-+ +++. +..+.+|...+++++.++....+. +-+...
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~------------~~~~~~ 101 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA------------GLSFTA 101 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc------------hhhhhh
Confidence 56666677777788888888888766665311 1443 344567888888888877754110 001113
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
...|+.+.+++..++.-+...+..+...+.++ +++|...++.-.....+|+.+...+...+.
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55677888888899999999999999999998 578999999999999999977766666554
No 239
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=92.54 E-value=0.27 Score=47.76 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc---ccchhhhHhH
Q 013138 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE---GWGWGFGIPA 112 (449)
Q Consensus 36 ~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~---gw~~iF~i~~ 112 (449)
=++++.+.|+...+..-..-+.++...|+|+ .+.+|+..+..-|+|-.+-|++.|+|.++- .|--.|.+..
T Consensus 355 Py~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 3688899999988888778889999999887 999999999999999999999999998853 4555666555
Q ss_pred HHHHH
Q 013138 113 VAMAI 117 (449)
Q Consensus 113 ~~~~l 117 (449)
..+.+
T Consensus 429 ~~~aL 433 (459)
T KOG4686|consen 429 GLMAL 433 (459)
T ss_pred HHHHH
Confidence 44433
No 240
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=92.10 E-value=0.5 Score=46.63 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+++++++..++.|.|..+..+..+.++....|++.+++.+++...++++|..+||.+.+.+..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~ 71 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLIL 71 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999997763
No 241
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=91.84 E-value=0.27 Score=46.00 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCC-CChHHHhhhhhhHHHHHH-HHHHHHHHHhhhhheeccc--cccchh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDD-ADEAEKKHKSSFFNWFYF-SINIGALIASSVLVWIQDN--EGWGWG 107 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~-~~~~~~~~r~~~~~~~y~-~~niG~~iGp~lgg~L~~~--~gw~~i 107 (449)
+.+.+.+.+.+.|++.|...|...+++.+.+++ ++ |....+.... ...+|..++|.+++.+... .+|++.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567778888889999999999999999999987 33 8888888888 6889999999888877654 688887
Q ss_pred hhHhHHH
Q 013138 108 FGIPAVA 114 (449)
Q Consensus 108 F~i~~~~ 114 (449)
|.+....
T Consensus 167 ~~~~~~~ 173 (338)
T COG0477 167 FLLAALL 173 (338)
T ss_pred HHHHHHH
Confidence 7765543
No 242
>PRK09848 glucuronide transporter; Provisional
Probab=91.44 E-value=3 Score=43.13 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQLQ-RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~~~-~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
++....+.++...++...+.+|+.+++.+|.+ +++.++ .+.+|.+..++...++.... . +.....
T Consensus 41 l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~ 107 (448)
T PRK09848 41 VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP-T------------DWSHSS 107 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc-C------------CCCcch
Confidence 45555666666667777777777666655411 123333 33555554444444332211 0 001112
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh-hhHHHHHHHHHHHHH
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD-AMRSLCSALSLTTVA 394 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~-~~~g~~~gl~~~~~~ 394 (449)
..+|....+++.+++..+..++..+.....+++ ++|...++.-....+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 455667777888999999998888876665544 567776665544333
No 243
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=89.96 E-value=26 Score=36.13 Aligned_cols=52 Identities=8% Similarity=-0.030 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHH
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGN 397 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~ 397 (449)
.++|.....+++......+..+....-+.+...++.=|.+.|++.+..-+=+
T Consensus 338 ~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQ 389 (412)
T PF01770_consen 338 GNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQ 389 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHH
Confidence 5789999999999888888888888888888888888888888877654444
No 244
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=89.80 E-value=0.015 Score=60.16 Aligned_cols=89 Identities=25% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++.+.++.++..++.++..+... ..+++.+....++.|+|-+...+....++.+.+|++.
T Consensus 73 ~GRk~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~ 135 (451)
T PF00083_consen 73 YGRKPALIISALLMIIGSILIAFAPS-----------------YNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH 135 (451)
T ss_pred cccccccccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccc
Confidence 45556677888888888887776410 0267888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||...++.+....+|..++..+...+
T Consensus 136 R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 136 RGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999998887765444
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=89.80 E-value=27 Score=36.23 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHH
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLV 404 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~ 404 (449)
.+...++...++-=+|.=..-.....++++.+|+++||..+|.-+..+++-..+.-.+.
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ 412 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLT 412 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666777777789999999999999999999999999998887775543
No 246
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=89.63 E-value=11 Score=39.61 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHH-HHHHHHHhHHHhhh
Q 013138 354 QYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTV-ALGNYLSSLLVTIV 407 (449)
Q Consensus 354 ~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~-~lG~~lg~~l~~~~ 407 (449)
+.++.-.++--.+-+.-|.++-..+++.|-.+=+..-... .+|-.+|+.+.+.+
T Consensus 382 ~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l 436 (472)
T TIGR00769 382 QNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGL 436 (472)
T ss_pred HHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHH
Confidence 5556666666677788899999999999999887755444 47777777766653
No 247
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=89.18 E-value=8.8 Score=36.73 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=69.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.+|...+.+|.++..+|+.++...-.. .-...+.|.+.....+.+.|....+........++-|. .
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~-------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVSG-------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC-------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 677788899999999999876543211 01125777777777888888888888888888899985 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
||.+.|+--...++++.+=+.+...+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHH
Confidence 99999999999999887665555433
No 248
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=88.52 E-value=0.64 Score=48.70 Aligned_cols=68 Identities=10% Similarity=-0.060 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-----cchhhh
Q 013138 36 FFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-----WGWGFG 109 (449)
Q Consensus 36 ~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-----w~~iF~ 109 (449)
......+.+++.|........++.+..|++. ++..++++....|+|..+|+.++|++.++.| ++.-+.
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~ 426 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL 426 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 3444567777777877778999999999887 8999999999999999999999999988877 654444
No 249
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=88.44 E-value=6.5 Score=39.46 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=63.6
Q ss_pred ccc-CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheecccc
Q 013138 25 TCQ-VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNE 102 (449)
Q Consensus 25 ~~~-~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~ 102 (449)
+|. ....+.+.+++++++-|++..+....--+-......+++-++ +..+..|+... ....+-++...+++-++.+..
T Consensus 112 scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~ 190 (354)
T PF05631_consen 112 SCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWF 190 (354)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence 455 555778999999999999999877766554443332222100 11455555444 334445555566666777666
Q ss_pred cc--chhhhHhHHHHHHHHHHHHhccc
Q 013138 103 GW--GWGFGIPAVAMAIAVVSFFSGTR 127 (449)
Q Consensus 103 gw--~~iF~i~~~~~~l~~i~~~~~~~ 127 (449)
+. .+.|..+++..+++.+.....++
T Consensus 191 ~~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 191 GFGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhccc
Confidence 55 78899888777777765544333
No 250
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=87.86 E-value=2.4 Score=42.80 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh---H
Q 013138 306 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM---R 382 (449)
Q Consensus 306 ~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~---~ 382 (449)
+.+.+|.+++.+|.+++...... ...++..+.+.+.+.+.++++|.++.=|....+..++.+++. +
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-----------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~ 70 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-----------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRR 70 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-----------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-----------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhh
Confidence 45778999999999886654211 000112445678888899999999999999999999999873 4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 383 SLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 383 g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
......+....++|+.++..+...+.
T Consensus 71 ~~~F~~fY~~in~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 71 DSFFNWFYWGINIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hhhHHHHHHHHhhhhHhhcccchhhc
Confidence 55666778888999999988777665
No 251
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=87.44 E-value=15 Score=33.82 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcCh-hhHHHHHHHHHH-HHHHHHHHHhHHHhhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPD-AMRSLCSALSLT-TVALGNYLSSLLVTIVT 408 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~-~~~g~~~gl~~~-~~~lG~~lg~~l~~~~~ 408 (449)
+.+.++...++.|++.+...|....++.+..|+ +.++...+.... ...+|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777779999999999999999999998 778888888888 57788888886665554
No 252
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=87.04 E-value=3.6 Score=42.62 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCccc---ccchhHHHHHHHHHHHhHhhhhhhhhcc
Q 013138 220 KAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPAS---LSIFDTLSVIFWVPIYDRFIVPVTRKFT 296 (449)
Q Consensus 220 k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~---l~~ln~~~ili~~pl~~~l~~~~~~k~~ 296 (449)
+++++...+.+..=+.|....+..+-+.++. | +|-.| .+-..++.=++.+|+.....+++-.|+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-------G-----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G 99 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-------G-----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG 99 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-------C-----CCcccccccccccccccceecccccccccccccccc
Confidence 3355555555555567777666666555542 3 33333 3445566667888998888888877776
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCcchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013138 297 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLP---EMPMSIMWQVPQYFLIGCAEVFTFIGQLEFF 373 (449)
Q Consensus 297 ~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~---~~~~s~~~li~~~il~glge~l~~p~~~~~i 373 (449)
+| +..+..|.+..+++..+..+....-.... |++ .....+-..++...+.-++.-.+..+.=++.
T Consensus 100 RR------RPfI~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L 167 (498)
T KOG0637|consen 100 RR------RPFILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALL 167 (498)
T ss_pred cc------cchHHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHH
Confidence 55 23567888888888887776544322222 222 2224555566666777777767776777777
Q ss_pred hhhcChhhHHH-HHHHHHHHHHHHHHHHhHHHh
Q 013138 374 YEQAPDAMRSL-CSALSLTTVALGNYLSSLLVT 405 (449)
Q Consensus 374 ~~~aP~~~~g~-~~gl~~~~~~lG~~lg~~l~~ 405 (449)
.+.+-...+-. +.+.+.++.++|+.+|-++..
T Consensus 168 ~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 168 ADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 77777766666 999999999999999977654
No 253
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=86.08 E-value=0.78 Score=46.88 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccc-ccchhhhHhHH
Q 013138 35 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE-GWGWGFGIPAV 113 (449)
Q Consensus 35 ~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~-gw~~iF~i~~~ 113 (449)
.+.+.-++.|.-.|..++.+.+..++..|++| -++.|++|.+..-.++.+||.+.+.+.+.. +-|..+..-++
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34555678999999999999999999999998 588999999999999999999999887643 45666665555
Q ss_pred HHHHHHHHH
Q 013138 114 AMAIAVVSF 122 (449)
Q Consensus 114 ~~~l~~i~~ 122 (449)
.+.++++.+
T Consensus 417 ll~iGl~~L 425 (438)
T COG2270 417 LLLIGLLLL 425 (438)
T ss_pred HHHhhHhhE
Confidence 555555543
No 254
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=85.74 E-value=0.69 Score=47.51 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHH-HHHHHHHHHHHhhhhheeccccccchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWF-YFSINIGALIASSVLVWIQDNEGWGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~-y~~~niG~~iGp~lgg~L~~~~gw~~iF~ 109 (449)
.+.+...+.-.+-++--++.-....-++++++|++- .++.+.+. ..+..+|..+.+.++|++.|++|++-.|+
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 456677888888999999999999999999999765 56777774 58889999999999999999999999998
Q ss_pred HhHHHHHHHHHH
Q 013138 110 IPAVAMAIAVVS 121 (449)
Q Consensus 110 i~~~~~~l~~i~ 121 (449)
+-+.+.+...+.
T Consensus 384 img~iv~~~~li 395 (412)
T PF01306_consen 384 IMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 765544443333
No 255
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=84.64 E-value=0.86 Score=47.99 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHH-HHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFY-FSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y-~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
++|..+..=.++|+..|++..++.+.+.+..||+- |+.+.+++. .--.+|--+|.++||.+.+.++=+-.|.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 56666777789999999999999999999999987 666666543 34467777888899999999998888888
Q ss_pred hHHHHHHHHHHHHhcccccc
Q 013138 111 PAVAMAIAVVSFFSGTRLFR 130 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~ 130 (449)
.++.+++.++.+....+.++
T Consensus 532 ~giAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLLK 551 (618)
T ss_pred HHHHHHHHHHHHHHhhhhhc
Confidence 88777777766655544443
No 256
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=83.23 E-value=22 Score=34.64 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHH
Q 013138 352 VPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVA 394 (449)
Q Consensus 352 i~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~ 394 (449)
.+.+.++-..-++.+|..+-.-.+..|++.|+..+..+..--+
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence 5555667778889999999999999999999988876655444
No 257
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=7.7 Score=40.53 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=72.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
.++++-+.+|..+..+-.+...+ .|-+.+...-.+.|+|-.+.+...-.+..++.+++.
T Consensus 77 i~~K~~lv~ga~~y~~f~~gfl~---------------------~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 77 LGPKWALVIGATCYAAFPLGFLF---------------------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHh---------------------cchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 67778888887776555544333 355677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+.+..++.+.....+..+|+.+.-.+...
T Consensus 136 ie~Nisi~Wai~~~~li~Ggi~l~~~~~~ 164 (461)
T KOG3098|consen 136 IERNISIFWAIGQSSLIIGGIILFIYFQF 164 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhheeeeEe
Confidence 99999999999999999998877766543
No 258
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=79.77 E-value=30 Score=36.30 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCC-CCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKN-GLTQ-LQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM 346 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~-~~~~-~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (449)
+++.-.+.+++..=+.+.+.+|+++-..+|.+ +++. +..+..|..-.++.+.++..... -+...
T Consensus 45 is~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~--------------~~~~~ 110 (467)
T COG2211 45 LSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD--------------FSMTG 110 (467)
T ss_pred CcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC--------------cccCc
Confidence 66777777777788888888888755544322 1332 33456665655555555443210 11125
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcC-hhhHHHHHHHHHHHHHHHHHHHhHHHhhhhcc
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAP-DAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 410 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP-~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~~ 410 (449)
+..+....|.+.+++.-+++.|-.+...+..+ +++|....+..+...++|+.+...+..-+.+.
T Consensus 111 k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~ 175 (467)
T COG2211 111 KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKL 175 (467)
T ss_pred chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999888888775 57788899999999999988888877655543
No 259
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=76.99 E-value=78 Score=32.66 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHH
Q 013138 306 QRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLC 385 (449)
Q Consensus 306 ~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~ 385 (449)
..+.++.+...+...++.+. .+.+++-+..++.|++... -...++++++.+|+++=-++
T Consensus 72 pviil~~~~~i~t~~lll~~--------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v 130 (412)
T PF01770_consen 72 PVIILQALSYIITWLLLLFG--------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV 130 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence 45666666655666666554 5777877777888887655 47778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 386 SALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 386 ~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++....+.-+|..+|+.+++.+..
T Consensus 131 ts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 131 TSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888886653
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=73.83 E-value=4.8 Score=42.11 Aligned_cols=80 Identities=18% Similarity=0.080 Sum_probs=65.0
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhhe------eccccc
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVW------IQDNEG 103 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~------L~~~~g 103 (449)
..+.++++.+.+++++|+=++.|...+++++..|+.= .+.+++.|......|..++..+.+. ..+...
T Consensus 391 ~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~ 464 (498)
T COG3104 391 LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI 464 (498)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh
Confidence 3788999999999999999999999999999999764 7889999999988888888777773 233455
Q ss_pred cchhhhHhHHHH
Q 013138 104 WGWGFGIPAVAM 115 (449)
Q Consensus 104 w~~iF~i~~~~~ 115 (449)
....|+..+...
T Consensus 465 ~~~~F~~~g~v~ 476 (498)
T COG3104 465 EGRVFGTIGVVA 476 (498)
T ss_pred hhhhHHHHHHHH
Confidence 667777665433
No 261
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=72.41 E-value=31 Score=35.68 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc---ChhhHH
Q 013138 307 RMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA---PDAMRS 383 (449)
Q Consensus 307 ~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~a---P~~~~g 383 (449)
-+.+|.++.+++.+.+..... ...+........++..+|..+..........+.+ |.+ +|
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~----------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g 123 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPA----------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG 123 (433)
T ss_pred HHHHHHHHHHHHHHHHHhccc----------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence 456676666555655555421 1134445556667778888888776665555544 555 88
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 384 LCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 384 ~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..++..+..+.+|+.++..+.+...+
T Consensus 124 ~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 124 DLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999988876643
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=66.67 E-value=70 Score=33.85 Aligned_cols=40 Identities=13% Similarity=0.330 Sum_probs=33.6
Q ss_pred hhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc
Q 013138 55 SSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 100 (449)
Q Consensus 55 ~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~ 100 (449)
-++..|.++.+| -.+.|++++...|+|.+++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777776 6789999999999999999998888877
No 263
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=65.23 E-value=21 Score=37.10 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHH--HHHHHHHHHHHHHHHHhhhhHHHHhhhcCh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIM--WQVPQYFLIGCAEVFTFIGQLEFFYEQAPD 379 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~il~glge~l~~p~~~~~i~~~aP~ 379 (449)
++.+....+|..+.++|.++=.+... |..+..+| .......+.+.++.++...-.-++..--|+
T Consensus 106 ~GLR~a~llgt~ln~iGa~Ir~iss~--------------p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~ 171 (480)
T KOG2563|consen 106 FGLRTALLLGTVLNGIGAWIRLISSL--------------PFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP 171 (480)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhccC--------------ccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence 67777888999988888876554210 11112233 455566777888888775555677888999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 380 AMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 380 ~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++|..+..+-.+.+.+|-++|..+-..+-
T Consensus 172 ~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 172 DQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred chhhhhhhHHHhcchHHHHHHhhccceec
Confidence 99999999998888888888866655443
No 264
>PF12832 MFS_1_like: MFS_1 like family
Probab=62.84 E-value=20 Score=27.43 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=35.7
Q ss_pred hhccchhHHHHHhhhccCCCCCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHH
Q 013138 239 YSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFI 314 (449)
Q Consensus 239 ~~q~~~~~~~~~~~~~~~~g~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l 314 (449)
+......++..+.++.. .| ++....+.+.-..|+...+..|+++.+.+| .+..+.+..+..+
T Consensus 13 f~~~g~~~Pfl~~~~~~-~G----------l~~~~iGil~~i~~~~~~~~~pl~g~laDk---~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQ-LG----------LSPSQIGILSAIRPLIRFLAPPLWGFLADK---FGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHhhhhHhhhh-cC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCccHHHHHHHHH
Confidence 33334444555555543 46 566666666666677777667766666665 5555555555444
No 265
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=62.22 E-value=9.1 Score=39.27 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 99 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~ 99 (449)
+.|...+-++..|+-+|+...|....+.+..++++ |+-+++.-.++-++|.+++.+++-++.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666677788999999999999999999988776 999999999999999999888775553
No 266
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=61.16 E-value=1.3e+02 Score=27.66 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHH
Q 013138 271 IFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMW 350 (449)
Q Consensus 271 ~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (449)
..|.....+.-++......+..+|+ .+..+...+++...++.................. .+.+.......
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~---~~~~~~~~~~~ 175 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTA---GDYPWMALVQA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHH
Confidence 4566666665666666655544442 2233445555544555544443322211111100 00111234456
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcCh
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPD 379 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~ 379 (449)
+.+.+.+.++.|++.+.....+..+.-|+
T Consensus 176 ~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 176 YLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77788888999999999888888777664
No 267
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=59.99 E-value=14 Score=32.68 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 95 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg 95 (449)
+.+.++++-++.|+|.+.+....-.++.+..++++ |++-.+++....+.+.++|.+..
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988776654 77788888888888888776543
No 268
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=56.91 E-value=1.9e+02 Score=27.91 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhee---cc--ccccchhhhHhHHHHHHHHHHHHhccccc
Q 013138 73 KSSFFNWFYFSINIGALIASSVLVWI---QD--NEGWGWGFGIPAVAMAIAVVSFFSGTRLF 129 (449)
Q Consensus 73 r~~~~~~~y~~~niG~~iGp~lgg~L---~~--~~gw~~iF~i~~~~~~l~~i~~~~~~~~~ 129 (449)
|+....+--+..|+|+++.-+..-.- .+ .-.|++++.+.+...++-++.+.+..+++
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f 65 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF 65 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66677777788899988774332111 11 23599999988877766666665555554
No 269
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=56.01 E-value=48 Score=31.71 Aligned_cols=84 Identities=7% Similarity=0.038 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.|.+.+...+.+.|.+.+.......-.+.||+ + |+++.++.--...+++.+=..+.--+.+.-.-+..+.+
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l 166 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL 166 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 4566777777777777766666666666699985 4 99999999999999888776665544443223444444
Q ss_pred hHHHHHHHHHH
Q 013138 111 PAVAMAIAVVS 121 (449)
Q Consensus 111 ~~~~~~l~~i~ 121 (449)
+....+++++.
T Consensus 167 a~~~~~v~l~~ 177 (250)
T PF06813_consen 167 AVLPAVVCLVA 177 (250)
T ss_pred HHHHHHHHHHH
Confidence 44333444443
No 270
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=55.84 E-value=2.5e+02 Score=29.00 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+.++.+.+.-.--.+.+.+++..+.+|+...|++|.+-|...++|+..=..++..+.+
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 44456676666677778999999999999999999999999999988777666665543
No 271
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=53.85 E-value=1.3e+02 Score=31.49 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
||..+ ..=..-+.+..+....+++.+.+..+.|....|+.+.+...+..+++++.+...+
T Consensus 114 ~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 114 YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred HHHhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45444 1222334455557778899999999999999999999999999999998887654
No 272
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=53.45 E-value=8.6 Score=40.07 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=68.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc-chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMP-MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDA 380 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~ 380 (449)
++++..+..-++++.++-+..+... ..+.+ .=++|+..--+++|+|.+-=+|.+..+..+.+-++
T Consensus 111 ~GRK~vYG~~liImIi~t~~~~~s~--------------~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~ 176 (538)
T KOG0252|consen 111 FGRKKVYGKELIIMIICSALSGLSV--------------GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK 176 (538)
T ss_pred hcchhhhhHHHHHHHHHHHHhccCC--------------CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc
Confidence 4444566666777777666333211 01112 22567888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 381 MRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 381 ~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.||.-.+....+++.|...|..+...+..
T Consensus 177 ~RGa~iaavFa~Qg~GilaG~ivt~Iv~~ 205 (538)
T KOG0252|consen 177 TRGAFIAAVFAMQGFGILAGGIVALIVSA 205 (538)
T ss_pred cccceeEEEEEecchhHhhccHHHHHHHH
Confidence 99999999999998888887766655543
No 273
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=51.09 E-value=3e+02 Score=28.53 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 013138 347 SIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIV 407 (449)
Q Consensus 347 s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~ 407 (449)
+-|+.++..++.|+..|........+.-+.+++++|-.+..+..++..+|-.+|+.+.-.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777789999999999999999999999999999999999999999999998875444
No 274
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=45.39 E-value=35 Score=33.31 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHH
Q 013138 34 ATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAV 113 (449)
Q Consensus 34 ~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~ 113 (449)
..-+++..++-...|.+.|.++-+=.+..|+++ |+.+++++....|+=.+++-..---=....+-|-.|.++-.
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 334788888889999999999887776667665 99999999999998877553210000111344577888887
Q ss_pred HHHHHHHH
Q 013138 114 AMAIAVVS 121 (449)
Q Consensus 114 ~~~l~~i~ 121 (449)
.+.++.+.
T Consensus 419 ~~~~a~i~ 426 (454)
T KOG4332|consen 419 FLFVASIL 426 (454)
T ss_pred HHHHHHHH
Confidence 77666544
No 275
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=45.12 E-value=2.7e+02 Score=26.23 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhhhHHHHhhhcChhhHHH
Q 013138 347 SIMWQVPQYFLI-GCAEVFTFIGQLEFFYEQAPDAMRSL 384 (449)
Q Consensus 347 s~~~li~~~il~-glge~l~~p~~~~~i~~~aP~~~~g~ 384 (449)
....+...++.. ++.|+++......++.+.-|++..+.
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l~~ 220 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLLYK 220 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhcc
Confidence 345577778887 99999999999999988877776543
No 276
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=43.25 E-value=2.7e+02 Score=27.74 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhHHHHhhhcChhh
Q 013138 348 IMWQVPQYFLI-GCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 348 ~~~li~~~il~-glge~l~~p~~~~~i~~~aP~~~ 381 (449)
...+.+.++.. ++.|+++......++.+.-|+-.
T Consensus 186 ~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 186 IPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 33466777776 99999999999999998887654
No 277
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=39.12 E-value=4.9e+02 Score=27.43 Aligned_cols=61 Identities=8% Similarity=-0.133 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFI-GQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p-~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
|.....|+...+=..++.. ..++++.+....++..+.-++..+..++|..+|+.+...+.+
T Consensus 129 W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 129 WSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555444443334443 788999999999999999999999999999999999887764
No 278
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=36.22 E-value=52 Score=35.52 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=60.1
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD 100 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~ 100 (449)
..+.|..+++.-.+++|+|......-..-+.-+|.|++= |+-+.+++...+.+|..+..++......
T Consensus 453 ~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 453 TNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred CCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999774 9999999999999999999998865543
No 279
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=35.69 E-value=19 Score=37.46 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec
Q 013138 28 VTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ 99 (449)
Q Consensus 28 ~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~ 99 (449)
+...+...+.++..+.=+..-..+....++.+|...+++. +.++.+++...+.+|..+|..+|+|+.
T Consensus 137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccchhHHHHHHhcceeeeecccccC
Confidence 3345777889999999999999999999999999987761 222999999999999999999988553
No 280
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=35.01 E-value=1.1e+02 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhheeccc
Q 013138 71 KHKSSFFNWFYFSINIGALIASSVLVWIQDN 101 (449)
Q Consensus 71 ~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~ 101 (449)
++-++.+.+.....|+|.++|-.++|++..+
T Consensus 110 ~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS 140 (412)
T KOG1485|consen 110 KNAERRAAWIGLAANIGLAVAKVVASYLSGS 140 (412)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3345778899999999999999999999765
No 281
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=34.85 E-value=47 Score=34.57 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVL 95 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lg 95 (449)
+.+..++..++.|+..|-+.........+..+++| |+.+-.+.....++|-.+|..++
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999999999998888877655 88899999999999999888753
No 282
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=32.87 E-value=80 Score=33.41 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=51.9
Q ss_pred HHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 43 IALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 43 ~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.++..-++...-.+.+.+++|+++ ++...++-+....++-.++-..+++.+.+..||+..-.+
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Ali 354 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALI 354 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 555666677777788888898665 388999999999999988888999999999999987765
No 283
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=29.65 E-value=4.6e+02 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChh
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDA 380 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~ 380 (449)
..+.++..++.|+++......++.+.-|+-
T Consensus 182 ~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~ 211 (214)
T TIGR00123 182 FAYTQVPLAIAEGLLTVMIYDYITKLRPDT 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 445566789999999999999999887764
No 284
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.63 E-value=1.3e+02 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhheeccccccc
Q 013138 76 FFNWFYFSINIGALIASSVLVWIQDNEGWG 105 (449)
Q Consensus 76 ~~~~~y~~~niG~~iGp~lgg~L~~~~gw~ 105 (449)
.++...+.+.+..++|-.+|-||-++++-.
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 467777888888888888888998777643
No 285
>PRK08319 cobalt transport protein CbiM; Validated
Probab=29.07 E-value=4.8e+02 Score=24.36 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 351 QVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 351 li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+...++..+++|+++.....++..+.-|+-.
T Consensus 182 ~~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l 212 (224)
T PRK08319 182 FAVTQIPLAIAEGLLTVLIFNYLTKYRPDLL 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Confidence 3566677999999999999999988877654
No 286
>PRK03612 spermidine synthase; Provisional
Probab=28.80 E-value=97 Score=33.04 Aligned_cols=74 Identities=15% Similarity=0.026 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecc-ccccc-hhhhHhHHHHH
Q 013138 39 ALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQD-NEGWG-WGFGIPAVAMA 116 (449)
Q Consensus 39 ~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~-~~gw~-~iF~i~~~~~~ 116 (449)
.+++.++-.|+..|....+..+... ++ -++..+-.|....+|+++|.++.+++.- .+|-. ..+.+..+-++
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~ 188 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3344556666666666665544322 11 3456788899999999999999987754 45543 33333333333
Q ss_pred HHH
Q 013138 117 IAV 119 (449)
Q Consensus 117 l~~ 119 (449)
+++
T Consensus 189 ~a~ 191 (521)
T PRK03612 189 AAL 191 (521)
T ss_pred HHH
Confidence 343
No 287
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=28.56 E-value=1.2e+02 Score=31.29 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 356 FLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 356 il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
+++-+.-..--+.....+.+...++..|.++..+......|.++|..+...+.
T Consensus 141 ~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~ 193 (510)
T KOG3574|consen 141 LLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALE 193 (510)
T ss_pred HHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEec
Confidence 44445555556788888999999999999999999999999999877765554
No 288
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=26.27 E-value=8.1e+02 Score=26.04 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=30.1
Q ss_pred hccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc
Q 013138 59 ADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN 101 (449)
Q Consensus 59 ~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~ 101 (449)
-+..+.+| -.|.++.++...|++.+++..+..++.++
T Consensus 174 Neitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 174 NEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35555444 57899999999999999999999999764
No 289
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=26.12 E-value=8.3e+02 Score=26.14 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 350 WQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 350 ~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..+.++++..+..-..++...++-.+.++|..-|++|.+.|...|+|+.--..++-.+.
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lV 465 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLV 465 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHh
Confidence 46777888999999999999999999999999999999999999999988777666443
No 290
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=24.85 E-value=1.2e+02 Score=31.13 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=54.9
Q ss_pred cccCCCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheecccccc
Q 013138 25 TCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGW 104 (449)
Q Consensus 25 ~~~~~~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw 104 (449)
+|+....-..++..+++++..+.+ +.+.+.-+.||..- |+.+.+.-..+.-+|+++.|+++ +...-+-
T Consensus 430 ~c~~rn~~tvllf~arafisg~fq----vaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA--~~~e~s~ 497 (528)
T KOG0253|consen 430 TCKTRNAYTVLLFTARAFISGAFQ----VAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA--MRAELST 497 (528)
T ss_pred HhcCcchhHHHHHHHHHHHhchhe----EEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH--HHhccce
Confidence 344445555667788888776554 44555567777665 99999999999999999999988 3332333
Q ss_pred chhhhHhHHHHHHHHHH
Q 013138 105 GWGFGIPAVAMAIAVVS 121 (449)
Q Consensus 105 ~~iF~i~~~~~~l~~i~ 121 (449)
...-.+....++++.+.
T Consensus 498 sl~i~vy~~~~ilagIa 514 (528)
T KOG0253|consen 498 SLPIFVYGALFILAGIA 514 (528)
T ss_pred eehHHHHHHHHHHHHHH
Confidence 33333344444444443
No 291
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.69 E-value=1.2e+02 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhheeccccccchhhhHhHHHHHHHHHHH
Q 013138 75 SFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSF 122 (449)
Q Consensus 75 ~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~~~~~~l~~i~~ 122 (449)
++-.++...+-+++++|-+ .||+.+ +.+..+++.+..+++++++.
T Consensus 8 ~ae~l~~~il~~~~iisfi-~Gy~~q--~~~~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISFI-VGYITQ--SFSYTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhhe
Confidence 4555677777777877765 577776 44566676666655555543
No 292
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.20 E-value=48 Score=28.11 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.7
Q ss_pred chhhhHhHH
Q 013138 105 GWGFGIPAV 113 (449)
Q Consensus 105 ~~iF~i~~~ 113 (449)
||++++.++
T Consensus 1 RW~l~~iii 9 (130)
T PF12273_consen 1 RWVLFAIII 9 (130)
T ss_pred CeeeHHHHH
Confidence 566664433
No 293
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=20.65 E-value=3.1e+02 Score=24.32 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHH
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLE 371 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~ 371 (449)
.+..|+-+...++|+|.+++-...+.
T Consensus 93 ~~p~~~~lg~alfglG~VLVLSSmyk 118 (208)
T KOG4142|consen 93 DTPAAYSLGLALFGLGVVLVLSSMYK 118 (208)
T ss_pred cChHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45667888889999999887766543
No 294
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=20.00 E-value=5.3e+02 Score=27.52 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=36.9
Q ss_pred hhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 367 IGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 367 p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
..+...+.....++.+|.++..+....++|..++-.+...+.+
T Consensus 137 IAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns 179 (544)
T PF13000_consen 137 IAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNS 179 (544)
T ss_pred ceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCC
Confidence 5666778888899999999999999999999999888777654
Done!