Query 013138
Match_columns 449
No_of_seqs 114 out of 1168
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 3.8E-19 1.3E-23 185.4 12.0 349 32-409 108-466 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.1E-17 3.9E-22 172.6 20.3 324 31-408 106-446 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.6 2.9E-15 1E-19 152.2 18.4 286 31-409 117-408 (451)
4 3o7q_A L-fucose-proton symport 99.6 1.1E-13 3.6E-18 140.2 21.5 263 31-410 115-407 (438)
5 2gfp_A EMRD, multidrug resista 99.5 4.7E-15 1.6E-19 147.5 3.8 83 31-119 86-168 (375)
6 4gc0_A D-xylose-proton symport 98.9 2.1E-08 7.2E-13 102.8 16.1 79 30-114 123-209 (491)
7 2cfq_A Lactose permease; trans 98.9 1.2E-09 4.2E-14 110.5 5.9 87 302-408 286-373 (417)
8 3o7q_A L-fucose-proton symport 98.2 1.6E-05 5.4E-10 79.7 14.0 90 302-408 88-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.2 2.1E-05 7.3E-10 79.0 15.0 113 269-408 67-179 (451)
10 2gfp_A EMRD, multidrug resista 97.9 9.2E-05 3.1E-09 72.7 13.7 87 302-408 62-148 (375)
11 4aps_A DI-OR tripeptide H+ sym 97.8 0.00014 4.7E-09 74.2 12.9 111 269-409 59-171 (491)
12 2xut_A Proton/peptide symporte 97.8 0.00026 8.9E-09 72.9 14.4 94 292-408 74-172 (524)
13 4gc0_A D-xylose-proton symport 97.2 0.0087 3E-07 60.6 16.9 101 302-408 82-186 (491)
14 2cfq_A Lactose permease; trans 96.8 0.00032 1.1E-08 70.4 1.1 85 33-123 312-397 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=3.8e-19 Score=185.41 Aligned_cols=349 Identities=28% Similarity=0.424 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhh---hhhHHHHHHHHHHHHHHHhhhhheeccccccchhh
Q 013138 32 QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHK---SSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGF 108 (449)
Q Consensus 32 ~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r---~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF 108 (449)
+.+.+++++++.|+|.|...|...+++.|++|+++ | ...+++++...++|.++||.+++++.++.+|++.|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 56788999999999999999999999999999887 6 45566799999999999999999999989999999
Q ss_pred hHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccch
Q 013138 109 GIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSF 188 (449)
Q Consensus 109 ~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 188 (449)
++.++..+++++.+....++.+++++++++..+..+.+....+++..+.+ ....+...+........ +.......+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~ 257 (524)
T 2xut_A 182 GIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGI 257 (524)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCS
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhh
Confidence 99887766666655444433332222222211111111111111100000 00000000000000000 000000000
Q ss_pred hhhhhhhhccccccccCCCC-------ccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCC
Q 013138 189 FDKAAVEIQSDNIKESVNPW-------RLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSS 261 (449)
Q Consensus 189 l~~a~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g 261 (449)
+.................+| +..++..+++.|+.++...++.....++..+.+..+.+..+...++. + .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~ 333 (524)
T 2xut_A 258 VAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK--P--Q 333 (524)
T ss_dssp SHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC--C--S
T ss_pred hhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC--C--e
Confidence 00000000000000000000 00111122344445556666667777777777777666665543332 1 1
Q ss_pred ceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 013138 262 FKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL 341 (449)
Q Consensus 262 ~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~ 341 (449)
+ .+.+.+..++.+..++..++..++..|..+|+.++ .++..++.+|.++++++++++...+.. .+
T Consensus 334 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~ 398 (524)
T 2xut_A 334 W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MD 398 (524)
T ss_dssp S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TT
T ss_pred e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hc
Confidence 1 24555667777777888888877665555655333 566778888999888888776653210 00
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 342 PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 342 ~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
.+...+.+++++.+++.|+++++..|..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+
T Consensus 399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 01235677888999999999999999999999999999999999999999999999999999987754
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.77 E-value=1.1e-17 Score=172.61 Aligned_cols=324 Identities=20% Similarity=0.308 Sum_probs=205.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.++++++++|+|.|...|...+++.|.+|+++ ++|+.++++++...++|..+||.+++++.++.+|++.|++
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456788999999999999999999999999999876 3477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccccccc-c--CCCC-CchhHHHHH-------------HHHHHHhccCcCCCCccchhhccccccc
Q 013138 111 PAVAMAIAVVSFFSGTRLFRN-Q--KPGG-SPLTRICQV-------------VAASIRKHKVELPADKSLLYETADAESN 173 (449)
Q Consensus 111 ~~~~~~l~~i~~~~~~~~~~~-~--~~~~-~~~~~~~~v-------------l~~~~~~~~l~~~~~~~~l~~~~~~~~~ 173 (449)
.++..+++++.+....++..+ + +++. .+..+..+. ......... ...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~--------------- 245 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNS--------------- 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS-SCC---------------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc-Ccc---------------
Confidence 877666666655443332221 1 1111 111111110 000000000 000
Q ss_pred ccCCcccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhh
Q 013138 174 ITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERM 253 (449)
Q Consensus 174 ~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~ 253 (449)
.+.. ............... ....++... ....+.++..+..++++....++..+.+..+.+......
T Consensus 246 ------~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 312 (491)
T 4aps_A 246 ------LPAY--INLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE- 312 (491)
T ss_dssp ------TTHH--HHHHHHHHHHHHHHH---HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH-
T ss_pred ------cccc--hhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-
Confidence 0000 000000000000000 000000000 111233334455666777778888888777765443321
Q ss_pred ccCCCCCCceeCcccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013138 254 DTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMV 333 (449)
Q Consensus 254 ~~~~g~~g~~i~~~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~ 333 (449)
..+ .-..+.+.+..++.+..++..++...+.+ |+.+|+ .....++.+|.++++++++++......
T Consensus 313 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 377 (491)
T 4aps_A 313 --RVD--SSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL----- 377 (491)
T ss_dssp --SCC--CSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-----
T ss_pred --Hhc--cCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 112 01145667788888888888888877544 443331 455678889999999998877765422
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 334 REHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 334 ~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
..++...+.+++++..++.++++++..|..++++.+..|+++||.++|+++...++|..+++.+.+.+.
T Consensus 378 ------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 378 ------YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp ------CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred ------cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011223577888899999999999999999999999999999999999999999999999999877664
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.65 E-value=2.9e-15 Score=152.17 Aligned_cols=286 Identities=13% Similarity=0.066 Sum_probs=165.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccc-cchhhh
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFG 109 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~g-w~~iF~ 109 (449)
.+.+.+++++++.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++.+..+ ||+.|+
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 456788999999999999999999999999999876 9999999999999999999999999888898 999999
Q ss_pred HhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccchhhcccccccccCCcccCCCCccchh
Q 013138 110 IPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFF 189 (449)
Q Consensus 110 i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~l 189 (449)
+.++..++..+......++.++++...+ .. +. ... .+.++ + + ...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~--~~~--~~~~~-~------~--~~~~~---- 237 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSCGLPP-IE---------------EY--KND--YPDDY-N------E--KAEQE---- 237 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCCCS-CT---------------TT--CCC---------------------------
T ss_pred HHHHHHHHHHHHHHhhccCCHhhcCCCC-hh---------------hh--ccc--ccccc-h------h--hhhcc----
Confidence 8876655544433222221111000000 00 00 000 00000 0 0 00000
Q ss_pred hhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccchhHHHHHhhhccCCCCCCceeCc---
Q 013138 190 DKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPP--- 266 (449)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~~~~~~~~~~~~~~g~~g~~i~~--- 266 (449)
.+..+.. .+..++...++....................+.++...+| .+.
T Consensus 238 ---------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~ 290 (451)
T 1pw4_A 238 ---------------------LTAKQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH-----FALDKS 290 (451)
T ss_dssp ----------------------CCTHHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC-----CCHHHH
T ss_pred ---------------------cccccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHH
Confidence 0000000 0111111111111111111111111122222333443344 222
Q ss_pred ccccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 013138 267 ASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISI-LSMIAAAVLELIRLRMVREHNYYDLPEMP 345 (449)
Q Consensus 267 ~~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~a-i~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (449)
+.+..+..+..++..++... +.+|+. .+.++.+.++.++.+ ++++++.+. ..
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~----l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 343 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGW----MSDKVF-----RGNRGATGVFFMTLVTIATIVYWMN------------------PA 343 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHTS-----TTCHHHHHHHHHHHHHHHHHHTTSC------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHh-----cCCchhHHHHHHHHHHHHHHHHHHh------------------cc
Confidence 12223333333333333333 333420 044455556655555 555544331 01
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHH-HHHHHhHHHhhhhc
Q 013138 346 MSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVAL-GNYLSSLLVTIVTS 409 (449)
Q Consensus 346 ~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~l-G~~lg~~l~~~~~~ 409 (449)
.+.+......++.|++.....+....++.+..|++.||+++|+.+...++ |..+++.+.+.+.+
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778889998899999999999999999999999999999999 99999999987754
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=1.1e-13 Score=140.22 Aligned_cols=263 Identities=9% Similarity=0.034 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheec-cccc------
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQ-DNEG------ 103 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~-~~~g------ 103 (449)
.+.+.+++++++.|+|.|...|...+++.|.+|+++ |+++++++....++|.++||.+++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 467889999999999999999999999999999887 999999999999999999999999998 6555
Q ss_pred -------------------cchhhhHhHHHHHHHHHHHHhccccccccCCCCCchhHHHHHHHHHHHhccCcCCCCccch
Q 013138 104 -------------------WGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKHKVELPADKSLL 164 (449)
Q Consensus 104 -------------------w~~iF~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~l~~~~~~~~l 164 (449)
||+.|++.+...++..+.+...+ .++.+++.++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~------------------------- 241 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHSD------------------------- 241 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCTTTCCCC-------------------------
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--CCccccccccc-------------------------
Confidence 99999876654444443332221 11111100000
Q ss_pred hhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCCccccchhHHHHHHHHHHhhHhhhhHHHHHHhhccch
Q 013138 165 YETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGIIFSAVYSQMSS 244 (449)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~f~~~~~q~~~ 244 (449)
..+ ++..++.+..++...++......+........
T Consensus 242 -----------------~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (438)
T 3o7q_A 242 -----------------AKQ----------------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTA 276 (438)
T ss_dssp -----------------SST----------------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------ccc----------------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 000 00001111111111111111111111111111
Q ss_pred hHHHHHhh-hccCCCCCCceeCcc---cccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHH
Q 013138 245 LFVLQGER-MDTHVGNSSFKIPPA---SLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMI 320 (449)
Q Consensus 245 ~~~~~~~~-~~~~~g~~g~~i~~~---~l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l 320 (449)
.....+.+ ++..+| .+.. .+..+..+..++..++... +.+| +++++.+.++.++.+++++
T Consensus 277 ~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r-------~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPG-----MTAGFAANYLTGTMVCFFIGRFTGTW----LISR-------FAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHSTT-----CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCC-----cchhHHHHHHHHHHHHHHHHHHHHHH----HHHH-------hcchHHHHHHHHHHHHHHH
Confidence 11111222 333334 2211 1222222222222223222 3334 5566677788887777776
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHH
Q 013138 321 AAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLS 400 (449)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg 400 (449)
++.+. .+. +.+...++.+++.....|...+.+.+..|++ ++.++++.. ...+|..++
T Consensus 341 ~~~~~--------------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 341 ISAFA--------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHC--------------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHc--------------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHH
Confidence 66552 222 3445558889999999999999999999987 899999887 677999999
Q ss_pred hHHHhhhhcc
Q 013138 401 SLLVTIVTSI 410 (449)
Q Consensus 401 ~~l~~~~~~~ 410 (449)
+.+.+.+.+.
T Consensus 398 ~~~~g~l~~~ 407 (438)
T 3o7q_A 398 TPVMGFVSDA 407 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999877653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.50 E-value=4.7e-15 Score=147.50 Aligned_cols=83 Identities=13% Similarity=0.103 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccccccchhhhH
Q 013138 31 AQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGI 110 (449)
Q Consensus 31 ~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i 110 (449)
.+.+.+++.+++.|++.+...|...+++.|.+|+++ |+++++++....++|..+||.+++++.++.+||+.|++
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 467888999999999999999999999999999887 99999999999999999999999999998999999998
Q ss_pred hHHHHHHHH
Q 013138 111 PAVAMAIAV 119 (449)
Q Consensus 111 ~~~~~~l~~ 119 (449)
.++..++..
T Consensus 160 ~~~~~~~~~ 168 (375)
T 2gfp_A 160 LLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776544433
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.90 E-value=2.1e-08 Score=102.82 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=66.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHHHHHHHHHHHHHHhhhhheeccc--------
Q 013138 30 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN-------- 101 (449)
Q Consensus 30 ~~~~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~~y~~~niG~~iGp~lgg~L~~~-------- 101 (449)
..+.+.++++++++|+|.|+..|...+++++..|+++ |++..+++.....+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 3578889999999999999999999999999999887 99999999999999999999888766543
Q ss_pred cccchhhhHhHHH
Q 013138 102 EGWGWGFGIPAVA 114 (449)
Q Consensus 102 ~gw~~iF~i~~~~ 114 (449)
..|++.+.+..+.
T Consensus 197 ~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 197 DGWRYMFASECIP 209 (491)
T ss_dssp THHHHHHHTTHHH
T ss_pred hhhHHHhhhhhhh
Confidence 3466666555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.88 E-value=1.2e-09 Score=110.52 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=66.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++++++++.+.+. .+.++++...++.+++.....+....++.+..|++.
T Consensus 286 ~g~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 286 IGGKNALLLAGTIMSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 344556667777777766555431 345556666677788887777888899999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSAL-SLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl-~~~~~~lG~~lg~~l~~~~~ 408 (449)
||+..++ ++..+++|+.+|+.+.+.+.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 9999998 58899999999999998664
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.19 E-value=1.6e-05 Score=79.73 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=79.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.+|.++.+++.+++..... ..+++.++...++.|+|.+...+....++.+..|++.
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 150 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccc-----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence 67778899999999999887743211 1578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|+.++++.+...++|..+|+.+.+.+.
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988775
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.19 E-value=2.1e-05 Score=78.97 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=87.7
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+..+..+...+..++...+ .+| ++.++.+.+|.++.+++.+++.+.... ..++
T Consensus 67 ~~~~~~~~~~~~~~~~G~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~ 119 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSV----SDR-------SNPRVFLPAGLILAAAVMLFMGFVPWA----------------TSSI 119 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHH-------SCHHHHHHHHHHHHHHHHHHHHHCHHH----------------HSSS
T ss_pred HHHHHHHHHHHHHHhHHHH----HHh-------cCchHHHHHHHHHHHHHHHHHHhhhhc----------------cccH
Confidence 3344444444444554443 334 566678889999999999888762110 0567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
++++...++.|++.+...|....++.+..|+++|++++|+.+...++|..+|+.+.+.+.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999999999999999999999887654
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.94 E-value=9.2e-05 Score=72.69 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=76.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM 381 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~aP~~~ 381 (449)
+++++.+.++.++.+++.+.+.+. .+++.++...++.|++.+...+....++.+..|+++
T Consensus 62 ~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 121 (375)
T 2gfp_A 62 VGRRPVILVGMSIFMLATLVAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ 121 (375)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred hCCchhHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH
Confidence 555567788999988888887765 366788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 382 RSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 382 ~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++++++.+...++|..+|+.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 122 LRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999888664
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.81 E-value=0.00014 Score=74.24 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=85.3
Q ss_pred ccchhHHHHHHHHHHHhHhhhhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcchH
Q 013138 269 LSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSI 348 (449)
Q Consensus 269 l~~ln~~~ili~~pl~~~l~~~~~~k~~~~~~~~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~s~ 348 (449)
+.....+...+..++...+ .+|+ +++++.+.+|.++.+++.+++.+. .+.
T Consensus 59 ~~~~~~~~~~~~~~~~g~l----~dr~------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~ 108 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFV----ADRI------IGARPAVFWGGVLIMLGHIVLALP--------------------FGA 108 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHT------SCHHHHHHHHHHHHHHHHHHHHSC--------------------CST
T ss_pred HHHHHHHHHHHHHHHHHHH----Hhcc------ccchHHHHHHHHHHHHHHHHHHHh--------------------hhH
Confidence 3444445555555555553 3341 244567888888888888877652 467
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhhcChhh--HHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q 013138 349 MWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAM--RSLCSALSLTTVALGNYLSSLLVTIVTS 409 (449)
Q Consensus 349 ~~li~~~il~glge~l~~p~~~~~i~~~aP~~~--~g~~~gl~~~~~~lG~~lg~~l~~~~~~ 409 (449)
++++...+++|+|.+...|....++.+..|++. |+.+.++++...++|..+|+.+.+.+.+
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999999999999999999988 7788888999999999999998887653
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.78 E-value=0.00026 Score=72.85 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=77.6
Q ss_pred hhhccCCCCCC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc-hHHHHHHHHHHHHHHHHHHhhhh
Q 013138 292 TRKFTGHKNGL-TQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPM-SIMWQVPQYFLIGCAEVFTFIGQ 369 (449)
Q Consensus 292 ~~k~~~~~~~~-~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-s~~~li~~~il~glge~l~~p~~ 369 (449)
..++.+| + ++++.+.++.++.+++.+++.+. . +.++++...++.|++++...|..
T Consensus 74 ~G~l~dr---~~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 74 GGWIADR---FFGKYNTILWLSLIYCVGHAFLAIF--------------------EHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHTT---SSCSHHHHHHHHHHHHHHHHHHHHT--------------------SSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHh--------------------cccHHHHHHHHHHHHHhccccchhH
Confidence 3444444 5 77778888998888888877653 3 67788888999999999999999
Q ss_pred HHHHhhhcChhhHHHHHHH---HHHHHHHHHHHHhHHHhhhh
Q 013138 370 LEFFYEQAPDAMRSLCSAL---SLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 370 ~~~i~~~aP~~~~g~~~gl---~~~~~~lG~~lg~~l~~~~~ 408 (449)
.+++.+..|++.|+..++. ++...++|..+|+.+.+.+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999877777 88889999999988877654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.21 E-value=0.0087 Score=60.57 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=77.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHhhhc
Q 013138 302 LTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDL----PEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQA 377 (449)
Q Consensus 302 ~~~~~~i~iG~~l~ai~~l~l~~~~~~~~~~~~~~~~~~~----~~~~~s~~~li~~~il~glge~l~~p~~~~~i~~~a 377 (449)
+++++.+.++.+++.++.+..++.... .....-. .....+++.++...+++|+|++...+....++.+.+
T Consensus 82 ~GRk~~l~~~~~l~~i~~i~~a~~~~~------~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 82 FGRRDSLKIAAVLFFISGVGSAWPELG------FTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTTT------TSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhh------hhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 566678888999888888877753110 0000000 001257788999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 013138 378 PDAMRSLCSALSLTTVALGNYLSSLLVTIVT 408 (449)
Q Consensus 378 P~~~~g~~~gl~~~~~~lG~~lg~~l~~~~~ 408 (449)
|++.|+...++.+....+|..++..+.....
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 9999999999999999999999887766554
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.75 E-value=0.00032 Score=70.38 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChHHHhhhhhhHHH-HHHHHHHHHHHHhhhhheeccccccchhhhHh
Q 013138 33 SATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIP 111 (449)
Q Consensus 33 ~~~~~i~l~l~giG~g~~~p~~~a~i~d~~~~~~~~~~~~r~~~~~~-~y~~~niG~~iGp~lgg~L~~~~gw~~iF~i~ 111 (449)
.+.+++...+.+++.+...+...+++.|.+|++. |++++++ +....++|..+||.++|++.++.||+..|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 4455666666777777777777889999999875 8898988 47778899999999999999888999999887
Q ss_pred HHHHHHHHHHHH
Q 013138 112 AVAMAIAVVSFF 123 (449)
Q Consensus 112 ~~~~~l~~i~~~ 123 (449)
++..+++.+..+
T Consensus 386 ~~~~l~~~~~~~ 397 (417)
T 2cfq_A 386 GLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 766666665443
Done!