Query 013140
Match_columns 449
No_of_seqs 155 out of 190
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 00:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 3E-105 6E-110 802.8 29.4 410 1-449 4-445 (445)
2 PF05499 DMAP1: DNA methyltran 100.0 8.7E-34 1.9E-38 262.8 9.4 166 221-393 1-173 (176)
3 cd00167 SANT 'SWI3, ADA2, N-Co 97.5 6.1E-05 1.3E-09 53.0 1.9 41 129-170 1-42 (45)
4 smart00717 SANT SANT SWI3, AD 97.2 0.00019 4.1E-09 51.1 2.0 43 128-171 2-46 (49)
5 PF00249 Myb_DNA-binding: Myb- 97.2 9.8E-05 2.1E-09 54.8 0.5 42 129-170 3-45 (48)
6 PF13921 Myb_DNA-bind_6: Myb-l 96.8 0.00039 8.4E-09 53.4 0.9 42 130-172 1-43 (60)
7 PLN03212 Transcription repress 95.7 0.02 4.4E-07 56.9 6.1 61 119-180 66-131 (249)
8 PLN03091 hypothetical protein; 95.6 0.016 3.5E-07 61.7 5.2 62 119-181 55-121 (459)
9 PLN03212 Transcription repress 86.3 0.81 1.8E-05 45.8 3.9 49 124-172 22-72 (249)
10 PF05499 DMAP1: DNA methyltran 68.4 6.4 0.00014 37.7 3.9 115 199-338 16-138 (176)
11 PF13837 Myb_DNA-bind_4: Myb/S 67.4 1.4 3E-05 35.9 -0.7 54 128-181 2-73 (90)
12 cd05560 Xcc1710_like Xcc1710_l 58.5 7.4 0.00016 34.0 2.3 32 327-359 69-100 (109)
13 cd05126 Mth938 Mth938 domain. 58.0 7.8 0.00017 34.4 2.3 32 327-359 76-107 (117)
14 cd00248 Mth938-like Mth938-lik 57.7 8.7 0.00019 33.5 2.5 32 327-359 69-100 (109)
15 PF08963 DUF1878: Protein of u 54.3 6.3 0.00014 35.3 1.1 31 116-146 24-54 (113)
16 PLN03091 hypothetical protein; 53.3 6.4 0.00014 42.6 1.2 48 123-170 10-58 (459)
17 PF04430 DUF498: Protein of un 51.8 7.6 0.00016 33.7 1.2 32 327-359 70-101 (110)
18 PF14597 Lactamase_B_5: Metall 49.8 11 0.00025 36.6 2.2 73 66-170 6-78 (199)
19 PHA00649 hypothetical protein 48.9 45 0.00097 27.8 5.1 40 326-372 16-55 (83)
20 cd05125 Mth938_2P1-like Mth938 46.9 14 0.00031 32.7 2.2 31 327-358 71-101 (114)
21 KOG0048 Transcription factor, 45.8 19 0.00042 35.3 3.2 52 127-179 62-115 (238)
22 COG5114 Histone acetyltransfer 42.0 10 0.00023 39.6 0.6 45 125-170 61-106 (432)
23 COG1168 MalY Bifunctional PLP- 37.8 26 0.00056 37.5 2.7 26 129-156 174-199 (388)
24 PF03993 DUF349: Domain of Unk 36.1 62 0.0013 25.5 4.1 18 163-180 1-19 (77)
25 TIGR01557 myb_SHAQKYF myb-like 28.9 41 0.00088 26.4 1.9 41 129-169 5-50 (57)
26 PRK08068 transaminase; Reviewe 27.9 54 0.0012 33.6 3.2 28 129-157 183-210 (389)
27 cd03007 PDI_a_ERp29_N PDIa fam 27.2 56 0.0012 29.1 2.7 29 139-167 68-110 (116)
28 KOG0457 Histone acetyltransfer 26.5 34 0.00074 37.0 1.4 45 125-170 70-115 (438)
29 cd06227 Peptidase_M14-like_2 A 24.6 1.3E+02 0.0028 30.5 5.0 78 66-152 98-180 (272)
30 KOG0048 Transcription factor, 23.9 56 0.0012 32.1 2.3 41 128-168 10-51 (238)
31 PF13873 Myb_DNA-bind_5: Myb/S 23.7 73 0.0016 25.4 2.6 47 127-177 2-50 (78)
32 PF07357 DRAT: Dinitrogenase r 22.9 57 0.0012 33.2 2.1 54 82-143 100-160 (262)
33 PRK09147 succinyldiaminopimela 22.9 81 0.0018 32.4 3.4 28 129-157 182-209 (396)
34 PRK06620 hypothetical protein; 22.9 1.4E+02 0.0031 28.7 4.8 42 129-170 96-137 (214)
35 PRK07681 aspartate aminotransf 22.3 85 0.0018 32.3 3.4 28 129-157 182-209 (399)
36 PRK14841 undecaprenyl pyrophos 22.2 73 0.0016 31.7 2.7 79 110-204 50-139 (233)
37 KOG0049 Transcription factor, 21.6 46 0.00099 38.1 1.3 46 127-172 305-354 (939)
38 cd03769 SR_IS607_transposase_l 21.5 1.2E+02 0.0026 27.1 3.7 53 130-182 74-130 (134)
39 PRK06290 aspartate aminotransf 20.9 90 0.0019 32.7 3.3 28 129-157 195-222 (410)
40 cd04765 HTH_MlrA-like_sg2 Heli 20.3 1.7E+02 0.0036 25.0 4.2 34 327-363 62-95 (99)
41 COG1730 GIM5 Predicted prefold 20.1 1.7E+02 0.0037 27.3 4.5 65 352-416 21-90 (145)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3e-105 Score=802.82 Aligned_cols=410 Identities=41% Similarity=0.612 Sum_probs=316.7
Q ss_pred CchhhhhCCCCC-CCCCcc-cccCCCCCCCCCCCCcccHHHHHhhCC-CCCCCccccccccccCCCCC-CCCCceecccc
Q 013140 1 MDAKDILGIPKT-QLPTTQ-EKKSRPQKEPQRKPDGISREVYALTGG-LAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT 76 (449)
Q Consensus 1 ~DvrDIL~lp~~-~~~~~~-~Kk~~~~~~~~krp~Gm~REv~aLlG~-~~P~~p~~~~~~~K~k~~~~-~~~~W~~~pF~ 76 (449)
+||+|||+||+. ...+.. +++.+++....+||+|||||||||||+ .||++|+++. .||+++..+ ++++|.|+||+
T Consensus 4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt 82 (445)
T KOG2656|consen 4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT 82 (445)
T ss_pred ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence 699999999984 323332 222234455678999999999999995 7899998864 488876655 77899999999
Q ss_pred ccccCCCcEEeeeeeccCCCCCCCCCCcccccCCCcccccCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCceeEEEecCC
Q 013140 77 NSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRF 156 (449)
Q Consensus 77 N~AR~D~l~L~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~WT~eETdyLfdLc~~fDLRw~VI~DRy 156 (449)
|+||+|+++|||||++.+ ..+||||||||++|+||.||||||+.||.|+.||++|||||||||++||||||||+|||
T Consensus 83 n~aRkD~~~l~HWvr~~d---~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRy 159 (445)
T KOG2656|consen 83 NSARKDDATLHHWVRVGD---TPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRY 159 (445)
T ss_pred CccccCCceEEeeeeccC---CCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeecc
Confidence 999999999999999954 37899999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCCHHHHHHHHH-HHHHHHHHcCCCCCCCCCCCccCCCCChHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 013140 157 P-----SSRTVEELKDRYY-VSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAK 230 (449)
Q Consensus 157 ~-----~~RtvEDLK~RYY-V~~kl~~~R~~~~~~~~~~~l~~~~fd~~~E~~RK~~L~~ll~RT~~qi~EEe~L~~E~k 230 (449)
+ .+|||||||+||| ||++|+.+|++++.+. +-.++||++||++||+||++||+||++||+|||+|++|+|
T Consensus 160 d~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdl----lk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~K 235 (445)
T KOG2656|consen 160 DNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDL----LKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELK 235 (445)
T ss_pred chhhccccccHHHHHHHHHHHHHHHHHccCCCchhh----hhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5 4799999999999 9999999999986551 2337999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCC-CcccCCCCccccccccc----------CC-C---CCCCCCCCCCCcccCCCccccchhhhhh
Q 013140 231 RITDSRMASRAAEEPEM-PVASHVGSESADRAVVL----------GD-T---VSPSSNIQLPSATVVPSTSIIADSASTL 295 (449)
Q Consensus 231 rie~~R~~ek~~~e~~l-~~~s~~~~~~~e~~~~p----------~~-~---~~~~~~~~~p~a~~~~s~~~~~~~~~~~ 295 (449)
|||+ |++++..+.+++ ..+++++.+..+....| +. + ..+...+..|.+...++++.|++
T Consensus 236 kiEa-rkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~kt~~k~~~a~v~a~~~~s~~ss~~~F~~----- 309 (445)
T KOG2656|consen 236 KIEA-RKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAKKTRQKKHEANVPASPRESWMSSGIKFAD----- 309 (445)
T ss_pred HHHH-HhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHhhhhhhcccccccCccccchhhhhhhhhccc-----
Confidence 9996 667777766664 23344432221111000 00 0 00111111221222333333333
Q ss_pred hhhhccceeeehHhHHHHHHhhhccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013140 296 ASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEA 375 (449)
Q Consensus 296 ~~lr~~gvyLRs~~l~~~~~a~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~Iv~LleLKK~l~k~E~ 375 (449)
++..++.||++++ . .++++|++++|+++|+|+|+||.+.| .||+.||+.|+|||++|++|++|+.++..|++
T Consensus 310 --~~~~l~tlr~q~m---~--~panvgqrkiK~~EQ~lq~~~v~~sp-~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~ 381 (445)
T KOG2656|consen 310 --LRVALVTLRSQRM---K--QPANVGQRKIKRLEQELQELGVRLSP-APTEQLCKSFNELRSDVVTLLELSPALYLCEY 381 (445)
T ss_pred --chhhhhccchhhc---c--CccccchhhhHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHhhccHhhhhhhh
Confidence 3444566666554 3 67789999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhccccc-ccCCCCCCccccccCCCCCcccccccCCCcccccccccccc-----CCCCCCCCCCCCCCCCccc-ccCC
Q 013140 376 EGSSYRDGS-YIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRK-----GPGRLSEAPSSPAHKRPRK-KASD 448 (449)
Q Consensus 376 El~~lr~~~-~~~~p~tP~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~krk-----~~~~~~~~~~~~~~~~~~~-~~~~ 448 (449)
|++++||++ +++++. . +.++.+.++-++..+-++|++ +| +.-||++|+|+|+ +||+
T Consensus 382 e~~s~k~~~~~~~~~~-----~--------~l~~P~~p~~~~~~~~e~~~~~~~~~~p----~g~~~~~h~~kr~~~as~ 444 (445)
T KOG2656|consen 382 ELSSLKHALNEALAIL-----Q--------ELSLPSRPVLPPFDVMERKESTLKKIGP----LGIPSKKHVRKREAGASI 444 (445)
T ss_pred hhhhhhhhhhhhhhhh-----h--------hcCCCCCCCCCCcchhhhhhhhcccCCC----CCCCcccccchhhccccc
Confidence 999999998 444322 2 333333333444444444433 44 2345999999999 9997
Q ss_pred C
Q 013140 449 L 449 (449)
Q Consensus 449 ~ 449 (449)
+
T Consensus 445 ~ 445 (445)
T KOG2656|consen 445 T 445 (445)
T ss_pred C
Confidence 5
No 2
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=8.7e-34 Score=262.78 Aligned_cols=166 Identities=28% Similarity=0.396 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCcccccccccC---CCCCCCCCCCCCCcccC---CCccccch-hhh
Q 013140 221 KDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLG---DTVSPSSNIQLPSATVV---PSTSIIAD-SAS 293 (449)
Q Consensus 221 EEe~L~~E~krie~~R~~ek~~~e~~l~~~s~~~~~~~e~~~~p~---~~~~~~~~~~~p~a~~~---~s~~~~~~-~~~ 293 (449)
||++|+.|||+||+ |+++|+++++||..+.++.........+.. ......+...+|.++.. ......+. +..
T Consensus 1 EEe~Li~ELrKIE~-RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~kKk~~~~~~~~~~~~~~~v~~~agi 79 (176)
T PF05499_consen 1 EEEMLIAELRKIEA-RKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSSKKKLPQKARPSKKKESPAVPETAGI 79 (176)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccCCcccccCCCcccccccccchhhhcc
Confidence 79999999999995 889999999998765443221100000000 00000000011111100 00000011 112
Q ss_pred hhhhhhccceeeehHhHHHHHHhhhccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013140 294 TLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYK 373 (449)
Q Consensus 294 ~~~~lr~~gvyLRs~~l~~~~~a~~~~~G~k~~K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~Iv~LleLKK~l~k~ 373 (449)
.+..++++||||||++| ++|+++|++++|+|+++|+||||+++| |||+.||+.||+||++||+|+|||+++++|
T Consensus 80 kFpd~k~~GV~LRSq~m-----klp~~vGqKk~K~iEq~L~elgv~~~P-mPTe~Ic~~fneLRsdivlL~eLk~a~~~~ 153 (176)
T PF05499_consen 80 KFPDFKSAGVHLRSQRM-----KLPSSVGQKKTKAIEQFLQELGVDLNP-MPTEEICQEFNELRSDIVLLYELKQALQNC 153 (176)
T ss_pred ccccccCCceEeeeccc-----ccCcchhhHHHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788999999988 489999999999999999999999999 999999999999999999999999999999
Q ss_pred HHhhhhcccccccCCCCCCc
Q 013140 374 EAEGSSYRDGSYIDMPGTPK 393 (449)
Q Consensus 374 E~El~~lr~~~~~~~p~tP~ 393 (449)
|+|+++|||++++++||-+.
T Consensus 154 E~El~~lr~r~eal~~gk~~ 173 (176)
T PF05499_consen 154 EYELQSLRHRYEALAPGKTL 173 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999754
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.47 E-value=6.1e-05 Score=52.96 Aligned_cols=41 Identities=29% Similarity=0.605 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHH
Q 013140 129 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY 170 (449)
.||.+|...|+.+|+.|+ ..|-.|+..++. ||.++++.|||
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHH
Confidence 499999999999999999 999999998865 99999999998
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.21 E-value=0.00019 Score=51.06 Aligned_cols=43 Identities=33% Similarity=0.650 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHH-H
Q 013140 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYY-V 171 (449)
Q Consensus 128 ~~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY-V 171 (449)
..||.+|...|..++..|+ .+|-.|+..++ .||..+++.||| +
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4699999999999999999 99999998886 899999999999 5
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.21 E-value=9.8e-05 Score=54.82 Aligned_cols=42 Identities=33% Similarity=0.684 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHhhhcCce-eEEEecCCCCCCCHHHHHHHHH
Q 013140 129 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLR-w~VI~DRy~~~RtvEDLK~RYY 170 (449)
.||.||.+.|.++++.|+-. |-.|++.++..||..+++.|||
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQ 45 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHH
Confidence 69999999999999999999 9999999999999999999998
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.84 E-value=0.00039 Score=53.41 Aligned_cols=42 Identities=31% Similarity=0.596 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH-HH
Q 013140 130 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY-VS 172 (449)
Q Consensus 130 WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY-V~ 172 (449)
||.||.+.|+.|+..|+-.|--|+..+ +.||..+++.||+ ..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHHHC
Confidence 999999999999999999999999998 4899999999999 44
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.72 E-value=0.02 Score=56.95 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=52.2
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcC
Q 013140 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY-VSRAILIARA 180 (449)
Q Consensus 119 eEY~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY-V~~kl~~~R~ 180 (449)
+=|..||. ...||.||-+.|+++...|+=+|..|+..+ ..||--++|.||| +.++.+..+.
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcC
Confidence 33777874 468999999999999999999999999876 5699999999999 8888776554
No 8
>PLN03091 hypothetical protein; Provisional
Probab=95.61 E-value=0.016 Score=61.74 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=53.5
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcCC
Q 013140 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY-VSRAILIARAP 181 (449)
Q Consensus 119 eEY~~~L~----d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY-V~~kl~~~R~~ 181 (449)
+=|..||. ...||.||-..|++|.+.|+=+|..|+..+ ..||--++|.||| +.++.+..+.-
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 44777774 457999999999999999999999999766 6899999999999 99998887653
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=86.29 E-value=0.81 Score=45.83 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred hcCCCCCCHHHHHHHHHHhhhcC-ceeEEEecCCCCCCCHHHHHHHHH-HH
Q 013140 124 YLTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYY-VS 172 (449)
Q Consensus 124 ~L~d~~WT~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RYY-V~ 172 (449)
-|+-..||.||-..|..++++|. -+|-.|+-+.+..||--..++||+ +-
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 34556799999999999999998 589999988777899999999998 54
No 10
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.39 E-value=6.4 Score=37.75 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=60.7
Q ss_pred HHHHHHH-HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccCCCCcccccccccCCCCCCCCCCCCC
Q 013140 199 SQEVERK-RALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLP 277 (449)
Q Consensus 199 ~~E~~RK-~~L~~ll~RT~~qi~EEe~L~~E~krie~~R~~ek~~~e~~l~~~s~~~~~~~e~~~~p~~~~~~~~~~~~p 277 (449)
-+|++|| +-|.+|++.+.++. +......|.|+.+.. .-++ +. ..+ +.. ......+.+
T Consensus 16 KkEREKK~qDLqkLit~ad~~~-~~~~~~a~~rk~ekk--~~kK-k~------~~~----------~~~-~~~~~~~~v- 73 (176)
T PF05499_consen 16 KKEREKKTQDLQKLITAADQQP-TPATNTAEARKTEKK--SSKK-KL------PQK----------ARP-SKKKESPAV- 73 (176)
T ss_pred HHHHHHHHHHHHHHHhhccccC-CCCCccHhhhhhhhc--cCCc-cc------ccC----------CCc-ccccccccc-
Confidence 3688888 57888888876665 445556666665520 1011 00 000 000 000011112
Q ss_pred CcccCCCccccchhhhhhhhhhccceeeeh-------HhHHHHHHhhhccchhhHHHHHHHHHHHhCC
Q 013140 278 SATVVPSTSIIADSASTLASLRMLRVYLRT-------YALEQMVQAASSSAGLRTIKRVEQALQELGV 338 (449)
Q Consensus 278 ~a~~~~s~~~~~~~~~~~~~lr~~gvyLRs-------~~l~~~~~a~~~~~G~k~~K~Ie~~L~ELgv 338 (449)
...++++|+++.+.++.||++.|.|=+ ..+.++++-+.-....--...|-+..+||.-
T Consensus 74 ---~~~agikFpd~k~~GV~LRSq~mklp~~vGqKk~K~iEq~L~elgv~~~PmPTe~Ic~~fneLRs 138 (176)
T PF05499_consen 74 ---PETAGIKFPDFKSAGVHLRSQRMKLPSSVGQKKTKAIEQFLQELGVDLNPMPTEEICQEFNELRS 138 (176)
T ss_pred ---hhhhccccccccCCceEeeecccccCcchhhHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHH
Confidence 224577888988899999998887622 2334444433222222234567777777744
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=67.39 E-value=1.4 Score=35.89 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHhhh--cCcee------------EEEecCC---CCCCCHHHHHHHHH-HHHHHHHHcCC
Q 013140 128 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYY-VSRAILIARAP 181 (449)
Q Consensus 128 ~~WT~eETdyLfdLc~~--fDLRw------------~VI~DRy---~~~RtvEDLK~RYY-V~~kl~~~R~~ 181 (449)
..||.+||..|+++..+ ++++| -.|++.. +..||.++++.++= +.+.+-..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999 66654 3333332 45899999999999 99998887764
No 12
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=58.45 E-value=7.4 Score=33.99 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 359 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~ 359 (449)
..+-+.|.+.||..-. |+|.+.|..||.|.++
T Consensus 69 ~~~~~~l~~~gi~vE~-m~T~~AcrTyN~L~~E 100 (109)
T cd05560 69 PALLAPLLARGIGVEV-MDTQAACRTYNILMGE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 4567789999999776 9999999999999753
No 13
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=58.00 E-value=7.8 Score=34.43 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 359 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~ 359 (449)
..+-+.|.+.||..-. |+|.+.|..||.|..+
T Consensus 76 ~~~~~~l~~~Gi~ve~-m~T~aAcrTYN~L~~E 107 (117)
T cd05126 76 PETVEKLEKRGVEVLV-LPTEEAVKRYNELAGK 107 (117)
T ss_pred HHHHHHHHhcCCEEEE-cChHHHHHHHHHHHhC
Confidence 3456699999999776 9999999999999864
No 14
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=57.74 E-value=8.7 Score=33.49 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 359 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~ 359 (449)
..+-..|.+.||..-. |+|.+.|..||.|..+
T Consensus 69 ~~~~~~l~~~gI~vE~-m~T~aAcrTyNiL~~E 100 (109)
T cd00248 69 RALRAALRAAGIGVEV-MSTGAACRTYNVLLSE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-eCcHHHHHHHHHHHhC
Confidence 4677889999999776 9999999999999854
No 15
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=54.33 E-value=6.3 Score=35.26 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=20.5
Q ss_pred cCHHHHHhhcCCCCCCHHHHHHHHHHhhhcC
Q 013140 116 YTDEEYEKYLTDPMWTKEETDQLFELCERFD 146 (449)
Q Consensus 116 ytdeEY~~~L~d~~WT~eETdyLfdLc~~fD 146 (449)
+++--|...+-..+||++|++-.++||++++
T Consensus 24 ~~k~PFy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 24 MEKYPFYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp TTT-HHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3333344455567899999999999999853
No 16
>PLN03091 hypothetical protein; Provisional
Probab=53.32 E-value=6.4 Score=42.60 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=41.4
Q ss_pred hhcCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHH
Q 013140 123 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 123 ~~L~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY 170 (449)
+-|+-..||.||-..|..++.+|+- .|-.|+...+..||--+.++||+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~ 58 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWI 58 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHH
Confidence 4456667999999999999999996 59999877666899999999998
No 17
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=51.76 E-value=7.6 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 359 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~ 359 (449)
..+...|++.||..-- |+|.+-|..||.|.++
T Consensus 70 ~~~~~~l~~~GI~ve~-m~T~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 70 PELREYLRKKGIGVEV-MDTPAACRTYNILASE 101 (110)
T ss_dssp HHHHHHHHTTT-EEEE-E-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 5688899999999664 9999999999999865
No 18
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=49.84 E-value=11 Score=36.59 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCCCceeccccccccCCCcEEeeeeeccCCCCCCCCCCcccccCCCcccccCHHHHHhhcCCCCCCHHHHHHHHHHhhhc
Q 013140 66 EKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF 145 (449)
Q Consensus 66 ~~~~W~~~pF~N~AR~D~l~L~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~WT~eETdyLfdLc~~f 145 (449)
++--|.|.-| |++|+=++.=+-|++.. =|+=|+-|.|+.+....+. .-=
T Consensus 6 rpdl~~Ws~f-n~~~n~dfng~~~~~p~-------------GnilIDP~~ls~~~~~~l~-----------------a~g 54 (199)
T PF14597_consen 6 RPDLFSWSWF-NEARNLDFNGHAWRRPE-------------GNILIDPPPLSAHDWKHLD-----------------ALG 54 (199)
T ss_dssp STTEEEEEEE-ETTTTEEEEEEEE--TT---------------EEES-----HHHHHHHH-----------------HTT
T ss_pred CCccchhhhc-ChhhccCceeEEEEcCC-------------CCEEecCccccHHHHHHHH-----------------hcC
Confidence 3446888888 77788777778898862 2778899999999987543 234
Q ss_pred CceeEEEecCCCCCCCHHHHHHHHH
Q 013140 146 DLRFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 146 DLRw~VI~DRy~~~RtvEDLK~RYY 170 (449)
.++|||+.-| +..|.-++..++||
T Consensus 55 gv~~IvLTn~-dHvR~A~~ya~~~~ 78 (199)
T PF14597_consen 55 GVAWIVLTNR-DHVRAAEDYAEQTG 78 (199)
T ss_dssp --SEEE-SSG-GG-TTHHHHHHHS-
T ss_pred CceEEEEeCC-hhHhHHHHHHHHhC
Confidence 7899999876 67899999999999
No 19
>PHA00649 hypothetical protein
Probab=48.93 E-value=45 Score=27.83 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013140 326 IKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 372 (449)
Q Consensus 326 ~K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~Iv~LleLKK~l~k 372 (449)
-+.|.++|.-|||+..- |-+ | +|+|.++.-+-..||+.|+
T Consensus 16 ~rAV~~~~~~LGVD~~~--P~~-V----EEFr~D~~~~Rr~RKA~D~ 55 (83)
T PHA00649 16 DRAVKKVFAILGVDVDV--PEQ-V----EEFREDLRFGRRMRKAADH 55 (83)
T ss_pred HHHHHHHHHHHcCCCCC--HHH-H----HHHHHHHHHHHHHHHHhhc
Confidence 37899999999999763 433 2 8999999999999999883
No 20
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=46.85 E-value=14 Score=32.70 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRK 358 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~ 358 (449)
..+-..|.+.||..-. |+|.+.|..||.|.+
T Consensus 71 ~~~~~~l~~~gi~vev-m~T~~AcrtyN~L~~ 101 (114)
T cd05125 71 PELRKYFKKLGIAVEV-VDTRNACATFNFLAE 101 (114)
T ss_pred HHHHHHHHHcCCEEEE-ECHHHHHHHHHHHHh
Confidence 3566888899999765 999999999999975
No 21
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=45.75 E-value=19 Score=35.30 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH--HHHHHHHHc
Q 013140 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY--VSRAILIAR 179 (449)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY--V~~kl~~~R 179 (449)
-..||.||.+-|+.|-..|+-||-+|+=+. +.||--++|--.= +++++....
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~L-PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRL-PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhC-CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999998554 5799999987655 778887765
No 22
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=41.95 E-value=10 Score=39.60 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=40.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHH
Q 013140 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY 170 (449)
+-+++|+-.|--.|.+-|...+| .|-=|+|-.+ .|+-||.|+.||
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~Hyl 106 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYL 106 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHH
Confidence 34789999999999999999998 6888888666 999999999998
No 23
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=37.82 E-value=26 Score=37.47 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCC
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy 156 (449)
-||+||---|-+||.+||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 49999999999999999997 667754
No 24
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=36.05 E-value=62 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.4
Q ss_pred HHHHHHHH-HHHHHHHHcC
Q 013140 163 EELKDRYY-VSRAILIARA 180 (449)
Q Consensus 163 EDLK~RYY-V~~kl~~~R~ 180 (449)
|+|..||. +|..++..+.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~ 19 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK 19 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 57899999 9999998765
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=28.91 E-value=41 Score=26.40 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHhhhcCc-ee---EEEecCCCCCC-CHHHHHHHH
Q 013140 129 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 169 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDL-Rw---~VI~DRy~~~R-tvEDLK~RY 169 (449)
.||.||-....+=++.|+. .| --|.+-+...+ |.+.++..+
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 89 66777777666 998888765
No 26
>PRK08068 transaminase; Reviewed
Probab=27.92 E-value=54 Score=33.55 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (449)
.|+.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay~ 210 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAYG 210 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhhh
Confidence 5999999999999999998 777777763
No 27
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=27.16 E-value=56 Score=29.11 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=22.2
Q ss_pred HHHhhhcCce---eEEE-----ec-----CCCCC-CCHHHHHH
Q 013140 139 FELCERFDLR---FIVI-----AD-----RFPSS-RTVEELKD 167 (449)
Q Consensus 139 fdLc~~fDLR---w~VI-----~D-----Ry~~~-RtvEDLK~ 167 (449)
-+||.+|+++ |+.| .+ .|.+. ||.++|..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 4899999997 7755 22 47775 99999974
No 28
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=26.54 E-value=34 Score=37.04 Aligned_cols=45 Identities=36% Similarity=0.624 Sum_probs=40.3
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCCCCCCHHHHHHHHH
Q 013140 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 125 L~d~~WT~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RYY 170 (449)
+-+++||-+|--.|++-|+.|++ .|-=|+|-.+ .+|=||-|+.|+
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~ 115 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYL 115 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHH
Confidence 56789999999999999999998 6888877666 899999999998
No 29
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=24.56 E-value=1.3e+02 Score=30.50 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=54.2
Q ss_pred CCCCceeccccccccCCCcEEe-----eeeeccCCCCCCCCCCcccccCCCcccccCHHHHHhhcCCCCCCHHHHHHHHH
Q 013140 66 EKITWQWLPFTNSARKDNLQLY-----HWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFE 140 (449)
Q Consensus 66 ~~~~W~~~pF~N~AR~D~l~L~-----HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~WT~eETdyLfd 140 (449)
....|-..|.-|| ||.... .|++-..+++..-.|+| .|+..-. .+-++.|. -..--+.-||.-|.+
T Consensus 98 ~~~~i~ivP~~NP---DG~~~~~~~~~~wR~N~~GVDLNRNf~~-~w~~~~~--~~~~~~y~---G~~~~sEpEt~av~~ 168 (272)
T cd06227 98 DNFDLKIIPNENP---DGRKKVESGNYCLRENENGVDLNRNYGA-DWGFKED--DYEDEEYS---GPAPFSEPETRVLRD 168 (272)
T ss_pred hcCcEEEEeccCC---chheeEeccCcccccCCccccccccCCc-ccccCCC--CccccccC---CCCCCCcHHHHHHHH
Confidence 4468999999997 999874 59988777777777765 5554322 22333342 122457889999999
Q ss_pred HhhhcCceeEEE
Q 013140 141 LCERFDLRFIVI 152 (449)
Q Consensus 141 Lc~~fDLRw~VI 152 (449)
+++++...++|-
T Consensus 169 ~~~~~~~~~~i~ 180 (272)
T cd06227 169 LLTSFSPDVFLS 180 (272)
T ss_pred HHHhCCCeEEEE
Confidence 999998665554
No 30
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=23.85 E-value=56 Score=32.11 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHhhhcCce-eEEEecCCCCCCCHHHHHHH
Q 013140 128 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDR 168 (449)
Q Consensus 128 ~~WT~eETdyLfdLc~~fDLR-w~VI~DRy~~~RtvEDLK~R 168 (449)
..||.||-+-|.++.+.|+-+ |..|....+-.|+=-..-.|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlR 51 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLR 51 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHH
Confidence 679999999999999999988 99999887644443333333
No 31
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=23.74 E-value=73 Score=25.35 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH--HHHHHHH
Q 013140 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY--VSRAILI 177 (449)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY--V~~kl~~ 177 (449)
.+.||.+|+..|.+|+++| ..||.++....-|..+ |++.+ |+..|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~-k~~~W~~I~~~lN~ 50 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKE-KRKAWEEIAEELNA 50 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHH-HHHHHHHHHHHHHh
Confidence 4689999999999999884 4566666554445544 55666 7777765
No 32
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=22.90 E-value=57 Score=33.23 Aligned_cols=54 Identities=20% Similarity=0.549 Sum_probs=37.7
Q ss_pred CCcEEeeeeeccCCCCCCCCCCcccccCCCcccccCHHHHHhhcCC-------CCCCHHHHHHHHHHhh
Q 013140 82 DNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTD-------PMWTKEETDQLFELCE 143 (449)
Q Consensus 82 D~l~L~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d-------~~WT~eETdyLfdLc~ 143 (449)
.|+||+.||-.-=+. +..|-+. .|..+..+.|..|+.+ .+=-...-|.|++.|+
T Consensus 100 EGAVLKGWVESRFGL-------~PtfHk~-~i~~~~s~a~~~Y~~ekm~~~~~tNaI~~QLDLLYeycQ 160 (262)
T PF07357_consen 100 EGAVLKGWVESRFGL-------LPTFHKE-PIRRFHSEAWARYVEEKMSGRFHTNAIESQLDLLYEYCQ 160 (262)
T ss_pred hhhhhhhhhhhccCc-------CcccccC-cCCCCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 499999999874443 3345544 4889999999999974 2333446677777775
No 33
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=22.87 E-value=81 Score=32.37 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (449)
.||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~l~~~a~~~~~-~ii~De~y~ 209 (396)
T PRK09147 182 VLPLDDWKKLFALSDRYGF-VIASDECYS 209 (396)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEeecccc
Confidence 5999999999999999987 566666554
No 34
>PRK06620 hypothetical protein; Validated
Probab=22.85 E-value=1.4e+02 Score=28.73 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCCCCCCHHHHHHHHH
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 170 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RYY 170 (449)
.|+.++--|||+.|++=+-..+|.+|+.+..-++.||..|+=
T Consensus 96 ~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~ 137 (214)
T PRK06620 96 NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIK 137 (214)
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHh
Confidence 587778889999999999878888888877777899998873
No 35
>PRK07681 aspartate aminotransferase; Provisional
Probab=22.34 E-value=85 Score=32.34 Aligned_cols=28 Identities=7% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (449)
-||.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~i~~~a~~~~~-~iI~De~y~ 209 (399)
T PRK07681 182 MAHEDFFKEVIAFAKKHNI-IVVHDFAYA 209 (399)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEeccch
Confidence 5999999999999999998 777777664
No 36
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.23 E-value=73 Score=31.74 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCcccccCHHHHHhhcCCCCCCHHHHHHHHHHhhh-----------cCceeEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 013140 110 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADRFPSSRTVEELKDRYYVSRAILIA 178 (449)
Q Consensus 110 ~v~ip~ytdeEY~~~L~d~~WT~eETdyLfdLc~~-----------fDLRw~VI~DRy~~~RtvEDLK~RYYV~~kl~~~ 178 (449)
.|+++.||-|-|. =+.+|.++||+|+.+ .+.|.-||-|+= +=-++|++..- ++..
T Consensus 50 ~lTvYaFS~eN~~-------R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~---~Lp~~~~~~i~---~~e~- 115 (233)
T PRK14841 50 YLTAFSFSTENWK-------RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKE---GLPEKVLKKWQ---EVEE- 115 (233)
T ss_pred EEEEEeeeHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh---hCCHHHHHHHH---HHHH-
Confidence 4677788877765 367999999999864 478888887762 22245554433 1111
Q ss_pred cCCCCCCCCCCCccCCCCChHHHHHH
Q 013140 179 RAPSPTDVSGHPLVKDPYNVSQEVER 204 (449)
Q Consensus 179 R~~~~~~~~~~~l~~~~fd~~~E~~R 204 (449)
.+..++. .+-.+-++|+-..|+.+
T Consensus 116 ~T~~~~~--~~Lnia~~Yggr~EI~~ 139 (233)
T PRK14841 116 KTKEFDR--MTLVIAFNYGGRREILD 139 (233)
T ss_pred HhcCCCC--cEEEEEecCCCHHHHHH
Confidence 1211111 11123378999888743
No 37
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=21.63 E-value=46 Score=38.09 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCceeEEEecCC---CCCCCHHHHHHHHH-HH
Q 013140 127 DPMWTKEETDQLFELCERFDLRFIVIADRF---PSSRTVEELKDRYY-VS 172 (449)
Q Consensus 127 d~~WT~eETdyLfdLc~~fDLRw~VI~DRy---~~~RtvEDLK~RYY-V~ 172 (449)
...||.||-+-|..|+.+--.-=+|=|||. -..||--.|--||| +-
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~L 354 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTL 354 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheecc
Confidence 467999999999999999999999999985 36899999999999 64
No 38
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=21.50 E-value=1.2e+02 Score=27.05 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHhhhcCceeEEEecCCCC---CCCHHHHHHHHH-HHHHHHHHcCCC
Q 013140 130 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYY-VSRAILIARAPS 182 (449)
Q Consensus 130 WT~eETdyLfdLc~~fDLRw~VI~DRy~~---~RtvEDLK~RYY-V~~kl~~~R~~~ 182 (449)
|++.--|++..+|+..+++++++.+-++. ..-++.|-.=.- ++++++..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 77777778888999999999999987753 356778888888 888888888764
No 39
>PRK06290 aspartate aminotransferase; Provisional
Probab=20.92 E-value=90 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHhhhcCceeEEEecCCC
Q 013140 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (449)
Q Consensus 129 ~WT~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (449)
-|+.+|-..|.++|+++++ |+|+-|-|.
T Consensus 195 v~s~e~l~~l~~la~~~~~-~iI~DEaY~ 222 (410)
T PRK06290 195 VATKEFYEEVVDFAKENNI-IVVQDAAYA 222 (410)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEecchh
Confidence 4999999999999999998 777777764
No 40
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.31 E-value=1.7e+02 Score=25.04 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 013140 327 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTL 363 (449)
Q Consensus 327 K~Ie~~L~ELgv~~kP~mPT~~Vc~~~~eLr~~Iv~L 363 (449)
+.|-.+|...+ ....|++.+.+++.+++.+++.|
T Consensus 62 ~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l 95 (99)
T cd04765 62 EGAKQALKEDG---AAAIREEEAEERLPSIRAELLDL 95 (99)
T ss_pred HHHHHHHHhcc---ccccchhhHHHHHHHHHHHHHHH
Confidence 34444454432 33457888888888888887765
No 41
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.06 E-value=1.7e+02 Score=27.29 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc---ccCCCCCCccccccC--CCCCcccccccCCCccc
Q 013140 352 EHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS---YIDMPGTPKRSQRAG--DQDRTFVPESINFGGER 416 (449)
Q Consensus 352 ~~~eLr~~Iv~LleLKK~l~k~E~El~~lr~~~---~~~~p~tP~~~~r~~--~~~~~~~~~~~~~~~~r 416 (449)
.-+.|+.+|..|-.+..-++.|..-|+.++... +.+.|..+...-... |.|...|+-+.|+..|+
T Consensus 21 qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~ 90 (145)
T COG1730 21 QIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEK 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeee
Confidence 346788888888888888888888888888765 899999998777533 56788899888887665
Done!