Query 013141
Match_columns 449
No_of_seqs 355 out of 3058
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 00:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.4E-46 1.4E-50 360.3 33.4 282 114-403 2-351 (352)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-45 1.2E-49 360.6 35.2 248 113-403 56-309 (578)
3 KOG0117 Heterogeneous nuclear 100.0 6.2E-45 1.3E-49 332.5 26.9 252 113-405 81-335 (506)
4 KOG0148 Apoptosis-promoting RN 100.0 2.3E-42 5E-47 296.2 25.8 239 112-404 3-241 (321)
5 KOG0145 RNA-binding protein EL 100.0 7.6E-42 1.6E-46 291.1 25.0 283 111-402 37-359 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 7.1E-41 1.5E-45 343.4 34.8 270 113-401 86-364 (562)
7 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-41 1.3E-45 343.9 29.3 252 117-402 2-262 (562)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.4E-39 5.2E-44 323.8 31.7 278 114-402 1-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-38 2.5E-43 319.9 30.5 285 112-400 86-447 (457)
10 TIGR01645 half-pint poly-U bin 100.0 2.1E-38 4.5E-43 314.0 29.0 174 113-289 105-284 (612)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-37 2.6E-42 311.5 32.3 278 114-401 95-480 (481)
12 KOG0144 RNA-binding protein CU 100.0 9.2E-38 2E-42 284.2 21.7 288 111-404 30-507 (510)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.8E-37 1.9E-41 310.6 30.5 277 110-400 170-501 (509)
14 KOG0127 Nucleolar protein fibr 100.0 5.9E-36 1.3E-40 279.7 25.9 281 116-400 6-377 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 5E-35 1.1E-39 276.6 25.3 169 204-405 103-279 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 7.7E-33 1.7E-37 261.7 24.6 174 110-291 102-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 9E-31 1.9E-35 248.7 22.1 239 116-400 2-245 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 3.3E-30 7.1E-35 230.0 16.6 281 114-397 112-531 (544)
19 KOG0123 Polyadenylate-binding 100.0 1.6E-29 3.5E-34 240.2 19.2 265 118-401 79-349 (369)
20 KOG0147 Transcriptional coacti 100.0 2.9E-30 6.2E-35 243.3 12.5 285 111-399 175-526 (549)
21 TIGR01648 hnRNP-R-Q heterogene 100.0 3.1E-28 6.8E-33 241.6 25.7 227 114-353 137-367 (578)
22 TIGR01645 half-pint poly-U bin 100.0 1.1E-28 2.4E-33 245.0 21.7 176 207-404 106-287 (612)
23 KOG0148 Apoptosis-promoting RN 100.0 7.3E-29 1.6E-33 213.4 17.6 169 114-291 61-240 (321)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-28 4.4E-33 237.7 22.9 177 114-291 88-351 (352)
25 KOG0110 RNA-binding protein (R 100.0 5.2E-28 1.1E-32 234.1 19.6 257 113-401 383-693 (725)
26 KOG0144 RNA-binding protein CU 100.0 5.3E-28 1.2E-32 220.7 14.1 173 204-408 30-213 (510)
27 KOG0127 Nucleolar protein fibr 99.9 6.7E-27 1.5E-31 219.3 16.9 279 115-401 117-530 (678)
28 TIGR01622 SF-CC1 splicing fact 99.9 7.9E-26 1.7E-30 227.1 21.9 174 205-400 86-265 (457)
29 KOG4211 Splicing factor hnRNP- 99.9 9.6E-25 2.1E-29 203.4 25.5 274 113-397 8-354 (510)
30 KOG0117 Heterogeneous nuclear 99.9 2.2E-25 4.7E-30 204.7 19.8 203 162-405 39-252 (506)
31 KOG4212 RNA-binding protein hn 99.9 3.6E-24 7.8E-29 195.8 24.6 170 113-285 42-290 (608)
32 KOG0131 Splicing factor 3b, su 99.9 6.1E-26 1.3E-30 184.4 11.6 174 113-293 7-181 (203)
33 KOG0145 RNA-binding protein EL 99.9 2.3E-25 4.9E-30 190.6 13.4 166 205-403 38-211 (360)
34 KOG1190 Polypyrimidine tract-b 99.9 2.2E-24 4.7E-29 195.8 19.9 281 112-404 25-376 (492)
35 KOG0131 Splicing factor 3b, su 99.9 3.8E-24 8.3E-29 174.0 11.8 167 206-404 7-180 (203)
36 KOG1190 Polypyrimidine tract-b 99.9 1.2E-22 2.7E-27 184.5 22.5 276 114-400 149-490 (492)
37 KOG0109 RNA-binding protein LA 99.9 9.3E-24 2E-28 183.8 13.1 148 209-401 3-150 (346)
38 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.2E-23 1.6E-27 208.5 20.9 174 113-289 293-502 (509)
39 KOG4205 RNA-binding protein mu 99.9 4.4E-23 9.6E-28 189.0 14.7 174 114-292 5-179 (311)
40 KOG0109 RNA-binding protein LA 99.9 9.4E-24 2E-28 183.8 8.9 150 116-291 3-152 (346)
41 KOG1456 Heterogeneous nuclear 99.9 1.1E-20 2.3E-25 170.0 25.9 279 111-401 27-363 (494)
42 KOG0120 Splicing factor U2AF, 99.9 2.8E-21 6E-26 185.6 15.3 274 111-400 171-491 (500)
43 KOG0146 RNA-binding protein ET 99.9 1.1E-21 2.4E-26 168.7 10.9 180 111-292 15-368 (371)
44 KOG0124 Polypyrimidine tract-b 99.9 2.4E-21 5.3E-26 173.5 11.9 172 209-402 114-291 (544)
45 KOG0146 RNA-binding protein ET 99.8 1E-20 2.2E-25 162.8 13.0 209 187-402 3-366 (371)
46 KOG0110 RNA-binding protein (R 99.8 1.2E-20 2.6E-25 183.3 11.8 175 116-291 516-695 (725)
47 KOG4205 RNA-binding protein mu 99.8 1.1E-19 2.3E-24 166.8 14.0 167 207-402 5-177 (311)
48 KOG1456 Heterogeneous nuclear 99.8 1.2E-17 2.5E-22 150.6 25.3 271 120-401 127-491 (494)
49 KOG0105 Alternative splicing f 99.8 6.1E-18 1.3E-22 138.0 18.2 173 206-389 4-176 (241)
50 PLN03134 glycine-rich RNA-bind 99.8 2.5E-18 5.4E-23 142.6 16.1 82 323-404 30-117 (144)
51 KOG1365 RNA-binding protein Fu 99.8 7.4E-19 1.6E-23 158.7 12.5 282 111-399 56-360 (508)
52 KOG4206 Spliceosomal protein s 99.8 2E-17 4.3E-22 140.7 17.1 190 206-399 7-220 (221)
53 KOG0147 Transcriptional coacti 99.7 2.3E-18 4.9E-23 163.3 8.2 175 206-400 177-357 (549)
54 KOG0105 Alternative splicing f 99.7 2.3E-17 5.1E-22 134.6 12.9 151 113-276 4-175 (241)
55 KOG4206 Spliceosomal protein s 99.7 2.1E-16 4.5E-21 134.6 16.1 163 114-287 8-220 (221)
56 KOG4212 RNA-binding protein hn 99.7 2.9E-16 6.3E-21 144.3 17.6 196 206-402 42-295 (608)
57 KOG0106 Alternative splicing f 99.7 1.1E-16 2.4E-21 137.9 8.8 165 209-397 2-167 (216)
58 KOG4211 Splicing factor hnRNP- 99.7 4.9E-15 1.1E-19 139.0 20.2 167 206-399 8-180 (510)
59 PLN03134 glycine-rich RNA-bind 99.7 4.5E-16 9.9E-21 129.1 11.8 86 205-291 31-116 (144)
60 KOG1548 Transcription elongati 99.7 5.2E-15 1.1E-19 132.7 19.1 193 204-400 130-351 (382)
61 KOG1457 RNA binding protein (c 99.6 4.9E-15 1.1E-19 124.8 13.1 183 206-389 32-274 (284)
62 KOG0107 Alternative splicing f 99.6 1.9E-15 4.1E-20 122.8 10.1 84 325-408 8-92 (195)
63 KOG1548 Transcription elongati 99.6 2.5E-14 5.5E-19 128.3 17.3 172 112-291 131-354 (382)
64 KOG0106 Alternative splicing f 99.6 6.8E-16 1.5E-20 133.0 6.4 152 116-286 2-168 (216)
65 KOG0122 Translation initiation 99.6 3.6E-15 7.9E-20 127.6 9.1 84 112-197 186-269 (270)
66 KOG0149 Predicted RNA-binding 99.6 3.3E-15 7.2E-20 127.4 8.4 80 111-191 8-87 (247)
67 KOG1457 RNA binding protein (c 99.6 3.2E-14 6.9E-19 119.9 13.0 160 112-276 31-273 (284)
68 KOG0121 Nuclear cap-binding pr 99.6 6.2E-15 1.3E-19 113.2 6.8 82 112-195 33-114 (153)
69 KOG0122 Translation initiation 99.5 3.7E-14 7.9E-19 121.5 9.6 84 205-289 186-269 (270)
70 KOG4207 Predicted splicing fac 99.5 2.2E-14 4.8E-19 119.5 7.9 77 324-400 10-92 (256)
71 KOG0125 Ataxin 2-binding prote 99.5 2.1E-14 4.6E-19 127.9 8.3 81 322-402 91-175 (376)
72 PF00076 RRM_1: RNA recognitio 99.5 4.1E-14 9E-19 102.9 7.6 66 118-184 1-66 (70)
73 PF00076 RRM_1: RNA recognitio 99.5 1.5E-13 3.2E-18 100.0 9.7 70 211-282 1-70 (70)
74 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.6E-18 123.1 9.2 98 107-208 88-185 (376)
75 COG0724 RNA-binding proteins ( 99.5 6E-13 1.3E-17 124.9 13.4 150 115-267 115-283 (306)
76 KOG0149 Predicted RNA-binding 99.5 1.3E-13 2.7E-18 117.9 7.6 81 206-288 10-90 (247)
77 KOG0107 Alternative splicing f 99.5 1.8E-13 4E-18 111.3 7.7 79 207-291 9-87 (195)
78 PLN03120 nucleic acid binding 99.5 3E-13 6.4E-18 119.9 9.7 74 327-401 4-80 (260)
79 KOG0114 Predicted RNA-binding 99.5 5E-13 1.1E-17 98.9 8.9 79 322-400 13-94 (124)
80 PF14259 RRM_6: RNA recognitio 99.4 7.1E-13 1.5E-17 96.4 8.7 65 330-394 1-70 (70)
81 KOG0121 Nuclear cap-binding pr 99.4 4.7E-13 1E-17 103.0 7.3 82 206-288 34-115 (153)
82 PF14259 RRM_6: RNA recognitio 99.4 1.2E-12 2.6E-17 95.1 9.3 70 211-282 1-70 (70)
83 KOG0113 U1 small nuclear ribon 99.4 1.6E-12 3.5E-17 114.6 10.8 89 203-292 96-184 (335)
84 COG0724 RNA-binding proteins ( 99.4 1.3E-11 2.8E-16 115.8 17.9 145 208-362 115-260 (306)
85 KOG4307 RNA binding protein RB 99.4 4.2E-12 9E-17 123.5 14.4 179 104-288 300-513 (944)
86 KOG0114 Predicted RNA-binding 99.4 2E-12 4.4E-17 95.7 9.0 84 204-291 14-97 (124)
87 KOG0120 Splicing factor U2AF, 99.4 1.5E-12 3.3E-17 125.7 10.9 177 112-289 286-492 (500)
88 KOG1365 RNA-binding protein Fu 99.4 1.7E-12 3.7E-17 117.9 10.2 170 114-289 160-362 (508)
89 PF13893 RRM_5: RNA recognitio 99.4 2.1E-12 4.6E-17 89.1 8.4 55 344-398 1-56 (56)
90 KOG0129 Predicted RNA-binding 99.4 8.3E-12 1.8E-16 118.4 15.1 156 111-269 255-431 (520)
91 PLN03120 nucleic acid binding 99.4 3E-12 6.4E-17 113.6 10.5 78 208-290 4-81 (260)
92 KOG0108 mRNA cleavage and poly 99.4 7E-13 1.5E-17 127.5 6.7 84 209-293 19-102 (435)
93 KOG0126 Predicted RNA-binding 99.4 3E-13 6.5E-18 110.6 3.1 87 206-293 33-119 (219)
94 KOG0113 U1 small nuclear ribon 99.4 2.3E-12 5E-17 113.6 8.7 84 110-193 96-179 (335)
95 KOG0126 Predicted RNA-binding 99.3 7.2E-14 1.6E-18 114.2 -1.3 79 112-192 32-110 (219)
96 PLN03213 repressor of silencin 99.3 3.4E-12 7.5E-17 119.6 9.4 77 324-400 7-87 (759)
97 KOG4207 Predicted splicing fac 99.3 2E-12 4.3E-17 108.0 6.9 84 206-290 11-94 (256)
98 smart00362 RRM_2 RNA recogniti 99.3 7.6E-12 1.6E-16 91.0 8.6 68 329-396 1-72 (72)
99 PLN03121 nucleic acid binding 99.3 8.4E-12 1.8E-16 108.9 10.0 74 326-400 4-80 (243)
100 PLN03213 repressor of silencin 99.3 1.5E-11 3.2E-16 115.4 10.0 80 206-290 8-89 (759)
101 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.4E-17 108.8 3.9 86 206-292 8-93 (298)
102 KOG0130 RNA-binding protein RB 99.3 8.1E-12 1.8E-16 97.1 6.6 88 203-291 67-154 (170)
103 PLN03121 nucleic acid binding 99.3 3.5E-11 7.5E-16 105.0 10.7 79 207-290 4-82 (243)
104 smart00362 RRM_2 RNA recogniti 99.3 4.6E-11 1E-15 86.8 9.6 72 210-284 1-72 (72)
105 smart00360 RRM RNA recognition 99.2 2.7E-11 5.8E-16 87.7 7.6 65 120-184 1-65 (71)
106 KOG0111 Cyclophilin-type pepti 99.2 7.3E-12 1.6E-16 105.5 5.0 80 325-404 8-93 (298)
107 KOG4660 Protein Mei2, essentia 99.2 1.5E-10 3.2E-15 111.0 14.4 166 108-288 68-249 (549)
108 KOG4307 RNA binding protein RB 99.2 1.1E-10 2.4E-15 113.9 13.5 186 209-397 312-510 (944)
109 KOG0130 RNA-binding protein RB 99.2 1.5E-11 3.2E-16 95.6 6.1 84 114-199 71-154 (170)
110 KOG0108 mRNA cleavage and poly 99.2 2.2E-11 4.9E-16 117.2 8.6 80 116-197 19-98 (435)
111 KOG0128 RNA-binding protein SA 99.2 1.4E-12 3E-17 130.2 -0.1 239 114-403 570-817 (881)
112 KOG0129 Predicted RNA-binding 99.2 3.1E-10 6.7E-15 107.9 15.5 167 203-382 254-432 (520)
113 smart00360 RRM RNA recognition 99.2 7.2E-11 1.6E-15 85.4 9.0 71 213-284 1-71 (71)
114 cd00590 RRM RRM (RNA recogniti 99.2 7.8E-11 1.7E-15 86.1 8.9 69 329-397 1-74 (74)
115 cd00590 RRM RRM (RNA recogniti 99.1 4.3E-10 9.3E-15 82.1 10.2 74 210-285 1-74 (74)
116 smart00361 RRM_1 RNA recogniti 99.1 3.9E-10 8.4E-15 81.6 8.4 62 222-284 2-70 (70)
117 KOG4454 RNA binding protein (R 99.1 3.1E-11 6.8E-16 101.8 1.5 146 111-280 5-154 (267)
118 PF13893 RRM_5: RNA recognitio 99.1 7.5E-10 1.6E-14 76.3 7.8 56 225-286 1-56 (56)
119 KOG0226 RNA-binding proteins [ 99.1 1.8E-10 3.9E-15 99.6 5.0 171 116-290 97-271 (290)
120 KOG0153 Predicted RNA-binding 99.0 6.8E-10 1.5E-14 100.3 8.7 81 320-400 221-302 (377)
121 KOG0116 RasGAP SH3 binding pro 99.0 1.1E-09 2.5E-14 104.9 10.4 78 326-404 287-370 (419)
122 KOG0132 RNA polymerase II C-te 99.0 5.6E-10 1.2E-14 110.6 7.8 80 326-405 420-499 (894)
123 smart00361 RRM_1 RNA recogniti 99.0 7.6E-10 1.6E-14 80.0 6.3 57 129-185 2-65 (70)
124 KOG4210 Nuclear localization s 99.0 7.4E-10 1.6E-14 102.1 7.2 178 113-292 86-267 (285)
125 KOG0132 RNA polymerase II C-te 99.0 9.3E-10 2E-14 109.0 7.0 107 115-229 421-527 (894)
126 KOG0128 RNA-binding protein SA 99.0 5.2E-11 1.1E-15 119.1 -2.2 150 114-289 666-815 (881)
127 KOG0112 Large RNA-binding prot 99.0 1.2E-09 2.5E-14 110.1 7.1 166 110-292 367-534 (975)
128 KOG0415 Predicted peptidyl pro 98.9 1.5E-09 3.3E-14 98.0 6.5 84 322-405 234-323 (479)
129 KOG0415 Predicted peptidyl pro 98.9 1.9E-09 4E-14 97.5 7.0 86 204-290 235-320 (479)
130 KOG4660 Protein Mei2, essentia 98.9 2.8E-09 6E-14 102.4 7.1 179 204-400 71-249 (549)
131 KOG4210 Nuclear localization s 98.9 3.4E-09 7.4E-14 97.7 7.4 176 207-405 87-268 (285)
132 KOG4208 Nucleolar RNA-binding 98.9 3.2E-09 7E-14 89.4 6.3 77 113-189 47-124 (214)
133 KOG0112 Large RNA-binding prot 98.8 2.9E-09 6.3E-14 107.3 5.6 162 205-402 369-532 (975)
134 KOG4208 Nucleolar RNA-binding 98.8 1.4E-08 2.9E-13 85.7 8.4 87 203-289 44-130 (214)
135 KOG4661 Hsp27-ERE-TATA-binding 98.8 2.4E-08 5.3E-13 95.7 8.1 77 325-401 403-485 (940)
136 KOG0153 Predicted RNA-binding 98.7 2.2E-08 4.8E-13 90.7 6.9 83 107-196 220-302 (377)
137 KOG4454 RNA binding protein (R 98.7 1.2E-08 2.6E-13 86.5 3.7 143 205-391 6-153 (267)
138 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.7E-12 71.0 8.9 80 116-195 2-85 (97)
139 KOG2193 IGF-II mRNA-binding pr 98.6 5.5E-09 1.2E-13 96.6 -0.2 153 209-402 2-158 (584)
140 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.3E-07 2.9E-12 90.7 8.5 83 206-289 403-485 (940)
141 KOG0226 RNA-binding proteins [ 98.6 4.8E-08 1E-12 84.8 4.0 146 226-399 117-268 (290)
142 PF08777 RRM_3: RNA binding mo 98.5 1.9E-07 4.1E-12 72.7 6.3 69 328-396 2-75 (105)
143 KOG0533 RRM motif-containing p 98.5 4.2E-07 9.1E-12 80.8 8.2 83 207-291 82-164 (243)
144 KOG0533 RRM motif-containing p 98.5 4.5E-07 9.7E-12 80.6 7.7 80 111-193 79-158 (243)
145 PF11608 Limkain-b1: Limkain b 98.5 6.1E-07 1.3E-11 64.5 6.6 69 328-400 3-76 (90)
146 KOG4209 Splicing factor RNPS1, 98.4 1.3E-06 2.8E-11 78.1 9.1 79 322-401 96-180 (231)
147 PF04059 RRM_2: RNA recognitio 98.4 2.8E-06 6.1E-11 64.5 9.5 81 209-289 2-87 (97)
148 KOG0151 Predicted splicing reg 98.4 8.9E-07 1.9E-11 87.5 7.9 81 321-401 168-257 (877)
149 KOG0116 RasGAP SH3 binding pro 98.3 9.4E-07 2E-11 85.1 6.7 78 112-192 285-362 (419)
150 KOG4209 Splicing factor RNPS1, 98.3 7.6E-07 1.7E-11 79.5 5.3 82 111-195 97-178 (231)
151 KOG0151 Predicted splicing reg 98.3 1.6E-06 3.4E-11 85.7 7.4 85 110-196 169-256 (877)
152 KOG4676 Splicing factor, argin 98.1 2.6E-06 5.7E-11 78.5 4.5 184 209-395 8-220 (479)
153 KOG1995 Conserved Zn-finger pr 98.1 8.7E-06 1.9E-10 74.8 7.8 82 324-405 63-158 (351)
154 PF11608 Limkain-b1: Limkain b 97.9 6.1E-05 1.3E-09 54.4 7.6 72 209-290 3-78 (90)
155 COG5175 MOT2 Transcriptional r 97.9 2.7E-05 5.9E-10 70.5 6.9 73 327-399 114-201 (480)
156 KOG2193 IGF-II mRNA-binding pr 97.8 2.6E-06 5.7E-11 79.2 -1.4 156 116-290 2-158 (584)
157 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.1E-05 8.9E-10 51.4 4.6 52 328-380 2-53 (53)
158 PF08777 RRM_3: RNA binding mo 97.8 5.2E-05 1.1E-09 59.1 5.7 59 116-180 2-60 (105)
159 PF05172 Nup35_RRM: Nup53/35/4 97.7 9.2E-05 2E-09 56.7 6.0 71 327-399 6-90 (100)
160 KOG1855 Predicted RNA-binding 97.7 7.7E-05 1.7E-09 70.0 6.0 64 323-386 227-309 (484)
161 PF14605 Nup35_RRM_2: Nup53/35 97.7 9.7E-05 2.1E-09 49.6 4.9 52 116-174 2-53 (53)
162 KOG1995 Conserved Zn-finger pr 97.6 5.7E-05 1.2E-09 69.6 4.5 85 205-290 63-155 (351)
163 KOG4676 Splicing factor, argin 97.6 1.6E-05 3.5E-10 73.4 0.8 155 115-277 7-214 (479)
164 KOG1855 Predicted RNA-binding 97.5 9.1E-05 2E-09 69.5 4.3 79 113-191 229-320 (484)
165 KOG1996 mRNA splicing factor [ 97.5 0.00019 4.2E-09 64.0 5.7 61 340-400 299-366 (378)
166 KOG4849 mRNA cleavage factor I 97.5 0.0001 2.2E-09 67.2 3.8 70 116-185 81-152 (498)
167 KOG3152 TBP-binding protein, a 97.4 6.2E-05 1.3E-09 66.0 2.0 67 326-392 73-157 (278)
168 COG5175 MOT2 Transcriptional r 97.4 0.0005 1.1E-08 62.6 7.7 81 208-289 114-203 (480)
169 KOG2202 U2 snRNP splicing fact 97.3 9.4E-05 2E-09 65.1 1.4 58 342-399 83-146 (260)
170 KOG0115 RNA-binding protein p5 97.3 0.00058 1.3E-08 60.1 6.1 90 168-273 5-94 (275)
171 KOG3152 TBP-binding protein, a 97.3 0.0002 4.4E-09 62.8 3.0 74 207-281 73-158 (278)
172 KOG0115 RNA-binding protein p5 97.1 0.00099 2.1E-08 58.6 5.6 87 263-388 6-97 (275)
173 PF08952 DUF1866: Domain of un 97.1 0.0027 5.9E-08 51.6 7.7 56 342-400 51-106 (146)
174 KOG2314 Translation initiation 97.0 0.0014 2.9E-08 64.0 6.5 72 113-185 56-133 (698)
175 KOG2416 Acinus (induces apopto 97.0 0.00055 1.2E-08 67.0 3.6 80 322-401 439-522 (718)
176 KOG4849 mRNA cleavage factor I 96.9 0.0031 6.7E-08 57.8 7.5 72 325-396 78-157 (498)
177 KOG2202 U2 snRNP splicing fact 96.9 0.00052 1.1E-08 60.5 2.1 67 223-290 83-149 (260)
178 KOG2314 Translation initiation 96.8 0.0039 8.4E-08 60.9 7.0 73 325-397 56-140 (698)
179 KOG2135 Proteins containing th 96.7 0.0012 2.7E-08 62.9 3.3 75 325-400 370-445 (526)
180 KOG2591 c-Mpl binding protein, 96.7 0.0046 9.9E-08 60.3 7.1 70 326-396 174-247 (684)
181 PF10309 DUF2414: Protein of u 96.7 0.01 2.3E-07 40.8 6.8 54 115-177 5-62 (62)
182 KOG1996 mRNA splicing factor [ 96.6 0.0069 1.5E-07 54.3 6.7 67 222-289 300-367 (378)
183 PF10309 DUF2414: Protein of u 96.4 0.014 2.9E-07 40.2 6.0 55 327-383 5-62 (62)
184 KOG2416 Acinus (induces apopto 96.3 0.0047 1E-07 60.7 4.7 81 204-290 440-523 (718)
185 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.028 6.1E-07 43.1 7.1 78 207-287 5-90 (100)
186 PF08675 RNA_bind: RNA binding 96.0 0.038 8.1E-07 40.2 6.7 54 328-384 10-63 (87)
187 PF15023 DUF4523: Protein of u 96.0 0.033 7.1E-07 44.8 6.9 75 323-399 82-160 (166)
188 KOG2253 U1 snRNP complex, subu 95.9 0.0067 1.4E-07 60.6 3.5 70 113-191 38-107 (668)
189 PF04847 Calcipressin: Calcipr 95.9 0.019 4.2E-07 49.4 5.9 62 340-401 8-71 (184)
190 KOG4285 Mitotic phosphoprotein 95.8 0.024 5.2E-07 51.3 6.2 72 327-400 197-269 (350)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.038 8.3E-07 47.5 6.7 75 326-400 6-97 (176)
192 KOG0804 Cytoplasmic Zn-finger 95.5 0.087 1.9E-06 50.5 8.9 69 208-278 74-142 (493)
193 PF08952 DUF1866: Domain of un 95.4 0.06 1.3E-06 44.0 6.8 56 224-289 52-107 (146)
194 PF07576 BRAP2: BRCA1-associat 95.4 0.22 4.7E-06 39.0 9.7 67 210-278 15-81 (110)
195 PF07576 BRAP2: BRCA1-associat 95.4 0.2 4.4E-06 39.2 9.4 69 113-183 11-80 (110)
196 PF08675 RNA_bind: RNA binding 95.2 0.1 2.3E-06 38.0 6.6 57 207-273 8-64 (87)
197 KOG2068 MOT2 transcription fac 94.9 0.011 2.5E-07 54.4 1.2 73 328-400 78-162 (327)
198 KOG4574 RNA-binding protein (c 94.8 0.014 3.1E-07 59.9 1.8 74 330-403 301-376 (1007)
199 PF11767 SET_assoc: Histone ly 94.8 0.12 2.7E-06 36.1 6.0 55 338-395 11-65 (66)
200 KOG2591 c-Mpl binding protein, 94.8 0.059 1.3E-06 52.9 5.8 61 112-179 172-234 (684)
201 PF10567 Nab6_mRNP_bdg: RNA-re 94.1 1.3 2.7E-05 40.5 12.2 173 205-384 12-212 (309)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 93.9 0.096 2.1E-06 45.0 4.8 71 207-278 6-82 (176)
203 KOG4574 RNA-binding protein (c 93.9 0.036 7.7E-07 57.1 2.4 75 117-197 300-374 (1007)
204 PF15023 DUF4523: Protein of u 93.9 0.3 6.5E-06 39.4 7.0 73 112-194 83-159 (166)
205 PF10567 Nab6_mRNP_bdg: RNA-re 93.8 1.2 2.7E-05 40.6 11.7 160 111-272 11-212 (309)
206 PF07292 NID: Nmi/IFP 35 domai 93.6 0.11 2.3E-06 38.7 3.9 73 254-349 1-74 (88)
207 KOG0921 Dosage compensation co 93.5 0.11 2.4E-06 54.3 5.1 33 416-448 1195-1227(1282)
208 KOG2068 MOT2 transcription fac 93.2 0.039 8.4E-07 51.0 1.2 82 208-290 77-164 (327)
209 PF07292 NID: Nmi/IFP 35 domai 92.9 0.083 1.8E-06 39.3 2.4 69 160-229 1-73 (88)
210 KOG0804 Cytoplasmic Zn-finger 92.3 0.6 1.3E-05 45.0 7.7 68 114-183 73-141 (493)
211 PF03880 DbpA: DbpA RNA bindin 90.8 0.27 5.8E-06 35.6 3.0 59 337-398 11-74 (74)
212 PRK11634 ATP-dependent RNA hel 90.3 1 2.2E-05 47.3 7.9 60 337-399 497-561 (629)
213 PF04847 Calcipressin: Calcipr 90.0 0.87 1.9E-05 39.3 6.0 63 221-290 8-72 (184)
214 TIGR02542 B_forsyth_147 Bacter 88.5 1.1 2.4E-05 34.6 4.9 118 122-261 10-129 (145)
215 PF03880 DbpA: DbpA RNA bindin 88.0 2.4 5.1E-05 30.6 6.3 59 218-286 11-74 (74)
216 KOG2135 Proteins containing th 87.7 0.34 7.4E-06 46.9 2.1 70 213-290 377-447 (526)
217 PF11767 SET_assoc: Histone ly 87.6 4 8.7E-05 28.6 6.9 55 219-283 11-65 (66)
218 KOG2318 Uncharacterized conser 87.5 2.6 5.6E-05 42.2 7.9 76 323-398 170-305 (650)
219 KOG2318 Uncharacterized conser 87.2 5.4 0.00012 40.0 9.9 128 112-286 171-303 (650)
220 KOG2253 U1 snRNP complex, subu 87.0 0.54 1.2E-05 47.6 3.1 74 321-397 34-107 (668)
221 KOG4019 Calcineurin-mediated s 86.5 0.67 1.5E-05 39.1 2.9 75 326-400 9-89 (193)
222 KOG4274 Positive cofactor 2 (P 86.2 0.85 1.8E-05 45.2 3.9 17 11-27 131-147 (742)
223 KOG4285 Mitotic phosphoprotein 84.9 3.4 7.4E-05 37.9 6.8 74 208-290 197-271 (350)
224 PF14111 DUF4283: Domain of un 81.2 1.1 2.4E-05 37.4 2.2 111 219-361 28-139 (153)
225 KOG3648 Golgi apparatus protei 81.0 0.29 6.3E-06 49.1 -1.5 12 20-31 53-64 (1179)
226 COG4371 Predicted membrane pro 77.1 2.4 5.3E-05 37.6 3.0 21 412-432 71-91 (334)
227 KOG4410 5-formyltetrahydrofola 74.9 9 0.00019 34.8 6.0 49 326-374 329-378 (396)
228 KOG3973 Uncharacterized conser 70.6 4.7 0.0001 37.7 3.3 19 211-229 152-170 (465)
229 COG4907 Predicted membrane pro 67.4 5.3 0.00012 38.9 3.1 14 374-387 526-539 (595)
230 KOG4274 Positive cofactor 2 (P 66.5 9.1 0.0002 38.4 4.6 15 160-174 389-403 (742)
231 KOG4410 5-formyltetrahydrofola 62.3 19 0.0004 32.9 5.3 53 112-169 327-379 (396)
232 KOG2891 Surface glycoprotein [ 61.9 33 0.00071 31.2 6.8 110 125-242 47-194 (445)
233 PF03468 XS: XS domain; Inter 61.6 10 0.00023 30.0 3.4 49 117-168 10-67 (116)
234 PRK14548 50S ribosomal protein 59.2 22 0.00048 26.3 4.5 54 330-383 23-81 (84)
235 COG4907 Predicted membrane pro 57.7 8.3 0.00018 37.7 2.5 10 342-351 489-498 (595)
236 KOG4679 Uncharacterized protei 57.5 22 0.00047 34.9 5.3 17 125-141 252-268 (572)
237 KOG3973 Uncharacterized conser 57.0 15 0.00033 34.5 4.0 8 425-432 380-387 (465)
238 TIGR03636 L23_arch archaeal ri 54.7 31 0.00068 25.0 4.6 54 330-383 16-74 (77)
239 KOG2295 C2H2 Zn-finger protein 54.1 2.6 5.7E-05 41.9 -1.4 69 114-182 230-298 (648)
240 PF00403 HMA: Heavy-metal-asso 53.9 50 0.0011 22.3 5.5 54 329-382 1-58 (62)
241 KOG3424 40S ribosomal protein 53.8 31 0.00067 27.0 4.6 48 218-266 33-84 (132)
242 COG4371 Predicted membrane pro 52.3 27 0.00059 31.3 4.6 6 385-390 50-55 (334)
243 KOG2891 Surface glycoprotein [ 52.2 7.6 0.00017 35.1 1.3 78 323-400 145-267 (445)
244 KOG4483 Uncharacterized conser 51.4 31 0.00067 33.1 5.1 54 115-175 391-445 (528)
245 KOG2295 C2H2 Zn-finger protein 51.2 4.3 9.4E-05 40.4 -0.4 70 324-393 228-303 (648)
246 COG5638 Uncharacterized conser 50.6 63 0.0014 31.2 7.0 76 323-398 142-295 (622)
247 TIGR03636 L23_arch archaeal ri 50.4 72 0.0016 23.2 5.9 58 210-270 15-73 (77)
248 PRK01178 rps24e 30S ribosomal 49.7 54 0.0012 25.1 5.4 49 218-267 29-81 (99)
249 KOG4213 RNA-binding protein La 49.5 22 0.00047 30.2 3.4 56 116-176 112-169 (205)
250 PF08544 GHMP_kinases_C: GHMP 48.8 49 0.0011 23.9 5.1 42 342-384 37-80 (85)
251 PF14111 DUF4283: Domain of un 46.2 30 0.00065 28.6 4.0 109 126-243 28-139 (153)
252 PF02166 Androgen_recep: Andro 45.8 6.8 0.00015 36.5 0.0 14 129-142 152-165 (423)
253 KOG4483 Uncharacterized conser 45.3 64 0.0014 31.1 6.1 57 325-382 389-446 (528)
254 PRK14548 50S ribosomal protein 45.1 1.1E+02 0.0023 22.7 6.2 58 211-271 23-81 (84)
255 COG5193 LHP1 La protein, small 43.3 11 0.00024 36.2 0.9 61 115-175 174-244 (438)
256 cd04908 ACT_Bt0572_1 N-termina 41.8 84 0.0018 21.5 5.2 46 340-386 14-62 (66)
257 PF05918 API5: Apoptosis inhib 41.6 8.7 0.00019 39.2 0.0 12 163-174 235-246 (556)
258 PF06682 DUF1183: Protein of u 40.1 60 0.0013 30.8 5.2 6 429-434 211-216 (318)
259 KOG1924 RhoA GTPase effector D 39.7 46 0.001 35.1 4.7 6 265-270 805-810 (1102)
260 KOG1295 Nonsense-mediated deca 39.7 32 0.0007 33.0 3.4 70 113-182 5-77 (376)
261 COG5638 Uncharacterized conser 38.7 2.1E+02 0.0045 27.9 8.4 40 111-150 142-186 (622)
262 PTZ00071 40S ribosomal protein 38.4 88 0.0019 25.3 5.2 49 218-267 34-87 (132)
263 KOG4407 Predicted Rho GTPase-a 38.4 9.8 0.00021 42.1 -0.2 17 19-35 310-326 (1973)
264 KOG4592 Uncharacterized conser 38.1 33 0.00071 35.0 3.3 7 117-123 235-241 (728)
265 cd00874 RNA_Cyclase_Class_II R 37.5 3E+02 0.0064 26.4 9.6 115 121-260 118-239 (326)
266 KOG4365 Uncharacterized conser 37.4 5.6 0.00012 38.5 -1.9 72 328-400 4-81 (572)
267 PF03468 XS: XS domain; Inter 36.9 50 0.0011 26.2 3.6 52 328-380 9-74 (116)
268 PF15513 DUF4651: Domain of un 36.4 78 0.0017 21.8 3.9 20 130-149 9-28 (62)
269 KOG1295 Nonsense-mediated deca 36.0 48 0.001 31.9 3.9 64 326-389 6-78 (376)
270 PF02714 DUF221: Domain of unk 35.8 40 0.00087 32.1 3.6 36 366-403 1-36 (325)
271 KOG4592 Uncharacterized conser 35.5 80 0.0017 32.4 5.5 8 263-270 431-438 (728)
272 COG2608 CopZ Copper chaperone 34.8 1.2E+02 0.0026 21.4 5.1 45 328-372 4-48 (71)
273 PF04626 DEC-1_C: Dec-1 protei 34.5 26 0.00056 27.3 1.5 17 416-432 78-94 (132)
274 PRK10629 EnvZ/OmpR regulon mod 32.7 2.1E+02 0.0047 23.0 6.7 71 327-399 35-109 (127)
275 PF02714 DUF221: Domain of unk 32.5 80 0.0017 30.0 5.1 55 160-229 1-55 (325)
276 PF07530 PRE_C2HC: Associated 32.0 1E+02 0.0022 21.7 4.2 64 223-289 2-65 (68)
277 COG2004 RPS24A Ribosomal prote 31.7 1.6E+02 0.0035 22.9 5.4 48 218-266 30-81 (107)
278 PF05918 API5: Apoptosis inhib 31.0 16 0.00035 37.3 0.0 11 258-268 330-340 (556)
279 PF06682 DUF1183: Protein of u 30.8 89 0.0019 29.6 4.8 11 428-438 207-217 (318)
280 PF03439 Spt5-NGN: Early trans 29.5 91 0.002 23.0 3.8 35 353-387 33-68 (84)
281 PF11823 DUF3343: Protein of u 29.0 80 0.0017 22.4 3.4 26 364-389 2-27 (73)
282 PRK07772 single-stranded DNA-b 28.3 1.5E+02 0.0032 25.8 5.4 6 212-217 9-14 (186)
283 PF14893 PNMA: PNMA 27.9 62 0.0014 30.9 3.3 54 206-260 16-71 (331)
284 KOG4008 rRNA processing protei 27.5 57 0.0012 29.1 2.7 35 111-145 36-70 (261)
285 PF01282 Ribosomal_S24e: Ribos 26.0 2.7E+02 0.0059 20.5 5.8 49 218-267 11-63 (84)
286 PTZ00191 60S ribosomal protein 25.8 1.4E+02 0.003 24.7 4.5 53 331-383 85-142 (145)
287 PF08734 GYD: GYD domain; Int 25.0 2.4E+02 0.0051 21.1 5.4 44 341-384 22-68 (91)
288 KOG3648 Golgi apparatus protei 24.1 7.6 0.00016 39.5 -3.6 14 21-34 51-64 (1179)
289 PRK11901 hypothetical protein; 23.3 1.5E+02 0.0033 28.0 4.8 62 115-180 245-307 (327)
290 PRK11901 hypothetical protein; 23.1 2.1E+02 0.0046 27.1 5.7 62 206-273 243-306 (327)
291 PF13689 DUF4154: Domain of un 23.0 2.9E+02 0.0064 22.6 6.2 60 222-287 2-61 (145)
292 KOG4019 Calcineurin-mediated s 23.0 72 0.0016 27.3 2.4 41 251-291 51-92 (193)
293 KOG4368 Predicted RNA binding 22.4 48 0.001 33.6 1.5 10 220-229 551-560 (757)
294 PRK10905 cell division protein 22.4 1.6E+02 0.0035 27.8 4.7 54 125-179 254-308 (328)
295 PF12829 Mhr1: Transcriptional 22.3 2E+02 0.0044 21.6 4.4 52 333-384 18-72 (91)
296 cd06404 PB1_aPKC PB1 domain is 22.2 3.3E+02 0.0072 20.1 7.3 58 209-272 9-69 (83)
297 PF03439 Spt5-NGN: Early trans 22.0 1.3E+02 0.0029 22.0 3.5 24 156-179 43-66 (84)
298 smart00596 PRE_C2HC PRE_C2HC d 21.9 1.8E+02 0.0038 20.6 3.8 64 223-289 2-65 (69)
299 TIGR00110 ilvD dihydroxy-acid 21.8 4.4E+02 0.0095 27.1 8.0 46 250-298 382-427 (535)
300 KOG1151 Tousled-like protein k 21.7 69 0.0015 31.7 2.3 14 329-342 492-505 (775)
301 KOG0339 ATP-dependent RNA heli 20.5 1.2E+02 0.0026 30.7 3.7 19 367-385 571-589 (731)
302 KOG1151 Tousled-like protein k 20.2 52 0.0011 32.6 1.2 13 210-222 390-402 (775)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.4e-46 Score=360.31 Aligned_cols=282 Identities=26% Similarity=0.457 Sum_probs=227.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
...+|||+|||+++++++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|++||+.|++..+. ++.+++.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~--g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ--NKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC--CeeEEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999999999885 46778877
Q ss_pred cccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
+.+... ....++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|++|++.|+|
T Consensus 80 a~~~~~-----~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSSD-----SIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccccc-----ccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 764432 23456899999999999999999995 999999999999988889999999999999999999999999
Q ss_pred ceecC--cceEEeecCCCCCCchhhcchhhhh------hhc-C-------------------------------------
Q 013141 274 VYCSS--RPMRIDVATPKKASGYQQQYSSQAL------VLA-G------------------------------------- 307 (449)
Q Consensus 274 ~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~------~~~-~------------------------------------- 307 (449)
..+.+ ..|.|.++................. ... .
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98876 5688888765542211100000000 000 0
Q ss_pred -----------CCCCCCCC-----cCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcE
Q 013141 308 -----------GPGSNGAR-----VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGC 365 (449)
Q Consensus 308 -----------~~~~~~~~-----~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~ 365 (449)
........ ...........+.+|||+|||+++++++|+++|++||.|.+|+|+++ +|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 00000000 00001111233457999999999999999999999999999999864 799
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 366 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 366 afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
|||+|.+.++|.+|++.|||..|+|+.|+|.|..++..
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999988653
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.5e-45 Score=360.59 Aligned_cols=248 Identities=19% Similarity=0.374 Sum_probs=209.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||++++|++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..+.. ++.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccc
Confidence 35689999999999999999999999999999999999 789999999999999999999999999987742 2334443
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~-v~~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
++ ...++|||+|||.++++++|.++|+ .+++ +.++.+. .....++++|||||+|.+.++|..|++.
T Consensus 134 ~S-----------~~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 134 IS-----------VDNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred cc-----------ccCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 32 2457999999999999999999996 6653 4444443 3334567899999999999999999998
Q ss_pred hCC--ceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhc
Q 013141 271 MNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348 (449)
Q Consensus 271 l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 348 (449)
|+. ..++++.|.|+|+.++.... .......++|||+||+.++++++|+++|
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d---------------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F 254 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD---------------------------EDVMAKVKILYVRNLMTTTTEEIIEKSF 254 (578)
T ss_pred hhccceEecCceEEEEeeccccccc---------------------------ccccccccEEEEeCCCCCCCHHHHHHHH
Confidence 864 45799999999998764321 1122335789999999999999999999
Q ss_pred ccc--CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 349 SQF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 349 ~~~--G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
+.| |.|++|.++ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|+++...
T Consensus 255 ~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 255 SEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 999 999999887 57999999999999999999999999999999999987543
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.2e-45 Score=332.49 Aligned_cols=252 Identities=18% Similarity=0.373 Sum_probs=220.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...+.|||+.||.++.|+||..+|++.|.|-++++++|+.+|.+||||||.|++.++|.+|++.||+..|. .++.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999884 34555554
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
.+ ..+++|||+|||.++++++|++.|.+..--|.+|.+...+ +..+.||||||+|.+...|..|.++|
T Consensus 160 ~S-----------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VS-----------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Ee-----------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 33 3678999999999999999999996444447888777664 35678999999999999999998877
Q ss_pred CC--ceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhcc
Q 013141 272 NG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (449)
Q Consensus 272 ~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 349 (449)
-. ..++|..+.|+|+.+..... .+.....+.|||+||+.++|+|.|+++|+
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~d---------------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~ 281 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPD---------------------------EDTMSKVKVLYVRNLMESTTEETLKKLFN 281 (506)
T ss_pred cCCceeecCCcceeeccCcccCCC---------------------------hhhhhheeeeeeeccchhhhHHHHHHHHH
Confidence 54 55799999999999986642 22344568899999999999999999999
Q ss_pred ccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 013141 350 QFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 350 ~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 405 (449)
+||.|++|+.+++ +|||+|.++++|.+|++.+||++|+|..|.|+++|+...+.
T Consensus 282 ~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 282 EFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hccceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999855 99999999999999999999999999999999999865444
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-42 Score=296.22 Aligned_cols=239 Identities=33% Similarity=0.632 Sum_probs=206.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
++..|||||+||..++||+-|..+|++.|+|.+++|+.| .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467899999999999999999999999999999999886 3455
Q ss_pred cccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
.|+.......+.....--.+||+.|...++.++|++.|. +||+|.+.++++|..|+++|||+||.|...++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 555544333333333345799999999999999999995 9999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhcccc
Q 013141 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351 (449)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~ 351 (449)
||.-|++|.|+..|++.+......+. ...........++.++|||+||+..++|++|++.|+.|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~----------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKP----------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF 188 (321)
T ss_pred CCeeeccceeeccccccCccccCCCC----------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC
Confidence 99999999999999998863321111 11112234456778999999999999999999999999
Q ss_pred CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 352 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 352 G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
|.|.+|++.+++|++||+|++.|+|.+||..+|+.+++|..+++.|.|.....
T Consensus 189 G~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 189 GPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred CcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999999999999999999999999999975543
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.6e-42 Score=291.11 Aligned_cols=283 Identities=27% Similarity=0.471 Sum_probs=235.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..+..+.|.|.-||..+|+|||+.+|...|+|++|++++|+.+|.+-||+||.|.++++|++|+..|||..+ ..+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 345567799999999999999999999999999999999999999999999999999999999999999888 678899
Q ss_pred ccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
|+++.++.... ....|||++||..+|..||+.+|+ .||.|...+++.|..++.+||.+||.|+..++|++||+.
T Consensus 115 VSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhhh-----cccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 99998765433 456899999999999999999997 999999999999999999999999999999999999999
Q ss_pred hCCceec--CcceEEeecCCCCCCchhhcc----hhhhhhhcCCC----------------------------CCCCCCc
Q 013141 271 MNGVYCS--SRPMRIDVATPKKASGYQQQY----SSQALVLAGGP----------------------------GSNGARV 316 (449)
Q Consensus 271 l~g~~~~--g~~i~v~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------------------~~~~~~~ 316 (449)
|||..-. ..+|.|+++............ .... ...+++ ..-....
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~-rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~ 267 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPA-RRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLA 267 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcc-ccCCCcccchhhhhccccccchhhhhccCCCccccccceee
Confidence 9998864 467999998765432211100 0000 000000 0000001
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCC
Q 013141 317 QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGK 390 (449)
Q Consensus 317 ~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g 390 (449)
....+......++|||.||.++.+|.-|+.+|.+||.|..|+|+++ +||+||++.+-++|..|+..|||..+++
T Consensus 268 ~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~ 347 (360)
T KOG0145|consen 268 GVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 347 (360)
T ss_pred eeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc
Confidence 1122334456899999999999999999999999999999999986 7999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 013141 391 QTVRLSWGRNPG 402 (449)
Q Consensus 391 ~~l~v~~~~~~~ 402 (449)
+.|.|.|..+..
T Consensus 348 rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 348 RVLQVSFKTNKA 359 (360)
T ss_pred eEEEEEEecCCC
Confidence 999999988753
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.1e-41 Score=343.44 Aligned_cols=270 Identities=26% Similarity=0.485 Sum_probs=223.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
....+|||+|||+++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.+++..+.+ +.+.+.
T Consensus 86 ~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~--~~i~v~ 162 (562)
T TIGR01628 86 SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLND--KEVYVG 162 (562)
T ss_pred cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecC--ceEEEe
Confidence 345689999999999999999999999999999999985 68899999999999999999999999998854 455554
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
................++|||+||+.++|+++|+++|+ .||.|.++.++++. ++.++|||||+|.+.++|.+|++.|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 163 RFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred ccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 33322222122334457899999999999999999995 99999999999884 68899999999999999999999999
Q ss_pred Cceec----CcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhc
Q 013141 273 GVYCS----SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348 (449)
Q Consensus 273 g~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 348 (449)
+..+. ++.+.|.++..+..+............ .........++|||+||++++++++|+++|
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~--------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQ--------------QERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHHhhHHhhh--------------hhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 99999 999999988776543211111000000 001123456789999999999999999999
Q ss_pred cccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 349 SQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 349 ~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
+.||.|.+|+++.+ +|+|||+|.+.++|.+|++.|||+.|+|+.|.|.|+...
T Consensus 307 ~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 307 SECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 99999999999863 699999999999999999999999999999999999864
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.1e-41 Score=343.90 Aligned_cols=252 Identities=30% Similarity=0.523 Sum_probs=222.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 013141 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (449)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (449)
+|||+|||+++||++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|++|++.+++..+. ++.|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~--gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG--GKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeeEEeecccc
Confidence 7999999999999999999999999999999999999999999999999999999999999998884 57788888764
Q ss_pred CCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
....+ .....+|||+||+.++++++|+++|+ .||.|.+++++.+ .+++++|||||+|.+.++|++|++.+++..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 23356899999999999999999995 9999999999988 4688999999999999999999999999999
Q ss_pred cCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE
Q 013141 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (449)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 356 (449)
.++.|.|.....+..+. .......++|||+||+.++|+++|+++|+.||.|.+
T Consensus 155 ~~~~i~v~~~~~~~~~~---------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE---------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cCceEEEeccccccccc---------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 99999997765543321 012234568999999999999999999999999999
Q ss_pred EEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeC----CeEEEEEecCCCC
Q 013141 357 VKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIG----KQTVRLSWGRNPG 402 (449)
Q Consensus 357 v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~l~v~~~~~~~ 402 (449)
+.+.++ +|+|||+|.+.++|.+|++.|++..|. |+.|.|.++....
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 999863 689999999999999999999999999 9999999876543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.4e-39 Score=323.80 Aligned_cols=278 Identities=19% Similarity=0.234 Sum_probs=211.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
++++|||+|||+++++++|+++|+.||.|.+|.++++ ++||||+|.+.++|++|++.++...+...+++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999875 3799999999999999998764433333667888888
Q ss_pred cccCCCCCcc-------ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 194 ATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 194 ~~~~~~~~~~-------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
+......... ......+|||+||++.+|+++|+++|+ .||.|.+|.++++.. +++|||+|.+.++|.+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSAQH 149 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHHHH
Confidence 7644322211 112234799999999999999999996 999999999987643 4689999999999999
Q ss_pred HHHHhCCceecC--cceEEeecCCCCCCc------h---hhc-c-------------hhhhhh--------hcCCCCCC-
Q 013141 267 AMTEMNGVYCSS--RPMRIDVATPKKASG------Y---QQQ-Y-------------SSQALV--------LAGGPGSN- 312 (449)
Q Consensus 267 A~~~l~g~~~~g--~~i~v~~~~~~~~~~------~---~~~-~-------------~~~~~~--------~~~~~~~~- 312 (449)
|++.|||..|.+ +.|+|+|++.....- . ... . ...... ...+.+..
T Consensus 150 A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 229 (481)
T TIGR01649 150 AKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG 229 (481)
T ss_pred HHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCC
Confidence 999999999964 578888887633110 0 000 0 000000 00000000
Q ss_pred -----------CC--------------------CcCCCCCCCCCCCcEEEEcCCCC-CCCHhHHHhhccccCceEEEEEe
Q 013141 313 -----------GA--------------------RVQGSQSDGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIP 360 (449)
Q Consensus 313 -----------~~--------------------~~~~~~~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~ 360 (449)
.. ............+++|||+||++ .+++++|+++|+.||.|.+|+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~ 309 (481)
T TIGR01649 230 GPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM 309 (481)
T ss_pred CCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE
Confidence 00 00000011134678999999998 69999999999999999999998
Q ss_pred CC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 361 VG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 361 ~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
++ +++|||+|.+.++|.+|++.|||..|.|+.|+|.+++...
T Consensus 310 ~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 310 KNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred eCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 76 6999999999999999999999999999999999997643
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.2e-38 Score=319.94 Aligned_cols=285 Identities=21% Similarity=0.398 Sum_probs=219.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+.+++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|| .|++..+.+ .+|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g--~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLG--RPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECC--eeeEE
Confidence 456789999999999999999999999999999999999999999999999999999999999 489988855 44554
Q ss_pred cccccCCCCC-------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHH
Q 013141 192 NWATFSGSDR-------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (449)
Q Consensus 192 ~~~~~~~~~~-------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A 264 (449)
.+........ .......++|||+|||.++|+++|+++|. .||.|..|.++.+..++.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 4433211110 01112358999999999999999999995 999999999999999899999999999999999
Q ss_pred HHHHHHhCCceecCcceEEeecCCCCCCchhhcc--------------------hhhhhh-hcC---CC---CCCC----
Q 013141 265 SRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY--------------------SSQALV-LAG---GP---GSNG---- 313 (449)
Q Consensus 265 ~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~--------------------~~~~~~-~~~---~~---~~~~---- 313 (449)
.+|++.|+|..|.|+.|+|.++............ ...... ... +. ....
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 9999999999999999999997643211100000 000000 000 00 0000
Q ss_pred -------------CC----------cC-C---CCCCCCCCCcEEEEcCCCCCCC----------HhHHHhhccccCceEE
Q 013141 314 -------------AR----------VQ-G---SQSDGESNNATIFVGALDSDVS----------DEDLREPFSQFGEILS 356 (449)
Q Consensus 314 -------------~~----------~~-~---~~~~~~~~~~~l~V~nlp~~~t----------~~~L~~~f~~~G~v~~ 356 (449)
.. .. . ..........+|+|.||....+ .+||++.|++||.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 00 00 0 0001235678999999955443 3789999999999999
Q ss_pred EEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 357 VKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 357 v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
|.|.. ..|++||+|.+.++|.+|++.|||+.|+|+.|.|.|...
T Consensus 402 v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 99974 479999999999999999999999999999999998764
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.1e-38 Score=314.03 Aligned_cols=174 Identities=18% Similarity=0.363 Sum_probs=153.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++++++|+++|..||.|.+|+++.|+.+++++|||||+|.+.++|++|++.||+..+.+ +.|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G--R~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec--ceeeec
Confidence 467899999999999999999999999999999999999999999999999999999999999999999865 455555
Q ss_pred ccccCCCC------CccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 193 WATFSGSD------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 193 ~~~~~~~~------~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
+....... ........++|||+||++++++++|+++|+ .||.|.++++.+++.+++++|||||+|.+.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 43321111 112223457999999999999999999995 99999999999999999999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCC
Q 013141 267 AMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
|++.||+..|+|+.|+|.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999998764
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-37 Score=311.54 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=215.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
...+|+|+||++.+|+++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.||+..|.+..+.+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999988642 3689999999999999999999999977666777777
Q ss_pred cccCCCC-------------------Cc----------------------------------------------------
Q 013141 194 ATFSGSD-------------------RR---------------------------------------------------- 202 (449)
Q Consensus 194 ~~~~~~~-------------------~~---------------------------------------------------- 202 (449)
++..... ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 6531100 00
Q ss_pred -------------------cccCCCceEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 013141 203 -------------------TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (449)
Q Consensus 203 -------------------~~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~ 262 (449)
....++++|||+||++ .+|+++|+++|+ .||.|.+|++++++ +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012456999999998 699999999995 99999999999863 689999999999
Q ss_pred HHHHHHHHhCCceecCcceEEeecCCCCCCchhhcc-hhh-h--hhhcCCCCCC-CCCcCCCCCCCCCCCcEEEEcCCCC
Q 013141 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY-SSQ-A--LVLAGGPGSN-GARVQGSQSDGESNNATIFVGALDS 337 (449)
Q Consensus 263 ~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~-~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nlp~ 337 (449)
+|.+|+..||+..|.|+.|+|.+++........... ... . .......... ............+++.+|||.|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 999999999999999999999998665321110000 000 0 0000000000 0000000111235678999999999
Q ss_pred CCCHhHHHhhccccCc--eEEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeE------EEEEecCCC
Q 013141 338 DVSDEDLREPFSQFGE--ILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQT------VRLSWGRNP 401 (449)
Q Consensus 338 ~~t~~~L~~~f~~~G~--v~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~------l~v~~~~~~ 401 (449)
++++++|+++|+.||. |..|++... +++|||+|++.++|.+|+..||++.|.++. |+|+|++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888988654 589999999999999999999999999885 999999874
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.2e-38 Score=284.21 Aligned_cols=288 Identities=25% Similarity=0.494 Sum_probs=235.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCC-CCCCCCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~-~~~~~~~~~ 189 (449)
.+.+.-+|||+-||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++. .|.+...+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3467778999999999999999999999999999999999999999999999999999999999999885 588999999
Q ss_pred cccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
.+++++.+.... ..+++|||+-|+..+||.||+++|+ +||.|+++.|++|.. +.+||+|||+|.+.+.|..||+
T Consensus 110 qvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 110 QVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred eecccchhhhcc----ccchhhhhhhccccccHHHHHHHHH-hhCccchhhheeccc-ccccceeEEEEehHHHHHHHHH
Confidence 999987543322 4578999999999999999999997 999999999999965 8999999999999999999999
Q ss_pred HhCCcee---cCcceEEeecCCCCCCchhhcchhhh---hhhcCC-----------------------------------
Q 013141 270 EMNGVYC---SSRPMRIDVATPKKASGYQQQYSSQA---LVLAGG----------------------------------- 308 (449)
Q Consensus 270 ~l~g~~~---~g~~i~v~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------------- 308 (449)
.||+..- +..+|.|+|+++++.+..+....... ....++
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~ 263 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGL 263 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccc
Confidence 9999653 66789999999887554222200000 000000
Q ss_pred ------------------------------------------CCCCCC---------C----------------------
Q 013141 309 ------------------------------------------PGSNGA---------R---------------------- 315 (449)
Q Consensus 309 ------------------------------------------~~~~~~---------~---------------------- 315 (449)
.+.... .
T Consensus 264 ~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~ 343 (510)
T KOG0144|consen 264 PPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPA 343 (510)
T ss_pred cCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCch
Confidence 000000 0
Q ss_pred ---------------------------------------------------------------------cCCCCCCCCCC
Q 013141 316 ---------------------------------------------------------------------VQGSQSDGESN 326 (449)
Q Consensus 316 ---------------------------------------------------------------------~~~~~~~~~~~ 326 (449)
.........+.
T Consensus 344 ~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpe 423 (510)
T KOG0144|consen 344 NYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPE 423 (510)
T ss_pred hcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCC
Confidence 00011123356
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
+..+||.+||-+.-+.||...|..||.|++.++.- ++.|+||.|++..+|..||..|||..++.++|+|...+.
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~ 503 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD 503 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence 67899999999999999999999999999977654 368999999999999999999999999999999999887
Q ss_pred CCCC
Q 013141 401 PGNK 404 (449)
Q Consensus 401 ~~~~ 404 (449)
+.+.
T Consensus 504 ~~np 507 (510)
T KOG0144|consen 504 RNNP 507 (510)
T ss_pred cCCC
Confidence 6543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=8.8e-37 Score=310.59 Aligned_cols=277 Identities=18% Similarity=0.296 Sum_probs=208.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcc------------CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (449)
......++|||+|||+.+|+++|+++|..+ +.|.++.+ ++.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 345678999999999999999999999975 23444444 345689999999999999999 59
Q ss_pred cCCCCCCCCCcccccccccCCC------------------------CCccccCCCceEEEcCCCCCCCHHHHHHHHhhhC
Q 013141 178 SGSLMPNTDQPFRLNWATFSGS------------------------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233 (449)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~ 233 (449)
++..+.+ ..|+|.+...... .........++|||+|||..+++++|+++|. .|
T Consensus 243 ~g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~ 319 (509)
T TIGR01642 243 DSIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SF 319 (509)
T ss_pred CCeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hc
Confidence 9988855 4555543221110 0001123457899999999999999999995 99
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCC
Q 013141 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNG 313 (449)
Q Consensus 234 g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (449)
|.|..+.++++..++.++|||||+|.+.++|..||+.|+|..|.++.|.|.++.................. .. ...
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~-~~---~~~ 395 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPV-TL---LAK 395 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccc-cc---ccc
Confidence 99999999999999999999999999999999999999999999999999998754332111100000000 00 000
Q ss_pred CCcCCCCCCCCCCCcEEEEcCCCCC--C--------CHhHHHhhccccCceEEEEEeCC---------CcEEEEEecCHH
Q 013141 314 ARVQGSQSDGESNNATIFVGALDSD--V--------SDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANRK 374 (449)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~V~nlp~~--~--------t~~~L~~~f~~~G~v~~v~i~~~---------~g~afV~F~~~~ 374 (449)
.............+.+|+|.||... + ..++|+++|+.||.|++|.|++. .|+|||+|.+.+
T Consensus 396 ~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e 475 (509)
T TIGR01642 396 ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVR 475 (509)
T ss_pred cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHH
Confidence 0000000112345788999999642 1 23689999999999999999863 489999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 375 DAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 375 ~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
+|.+|+..|||+.|.|+.|.|.|...
T Consensus 476 ~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 476 SAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999999999764
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-36 Score=279.73 Aligned_cols=281 Identities=20% Similarity=0.325 Sum_probs=219.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
.||||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||.|.-.|++++|++..++..+.+ +.+++..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G--r~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG--RILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc--eeccccccc
Confidence 799999999999999999999999999999999999999999999999999999999999999988855 445554444
Q ss_pred cCCCCC---------------------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEE
Q 013141 196 FSGSDR---------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYG 254 (449)
Q Consensus 196 ~~~~~~---------------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~a 254 (449)
...... .....+..+|.|+|||+.+.+++|+.+|+ .||.|.+|.|++....+.+ |||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~dgklc-GFa 161 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKDGKLC-GFA 161 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCCCCcc-ceE
Confidence 221111 01123367899999999999999999997 9999999999988775555 999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhc------chh---hh-hh----------------hcCC
Q 013141 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ------YSS---QA-LV----------------LAGG 308 (449)
Q Consensus 255 fV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~------~~~---~~-~~----------------~~~~ 308 (449)
||.|....+|..|++.+|+..|+||+|-|+|+.++........ ... .. .. .+.+
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ed 241 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSED 241 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccc
Confidence 9999999999999999999999999999999988764322110 000 00 00 0000
Q ss_pred CC----------------------CCCC-C---cCC------CCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE
Q 013141 309 PG----------------------SNGA-R---VQG------SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (449)
Q Consensus 309 ~~----------------------~~~~-~---~~~------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 356 (449)
.. .... + ... ..........+|||.|||+++|+++|.++|++||.|.+
T Consensus 242 eEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~y 321 (678)
T KOG0127|consen 242 EEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKY 321 (678)
T ss_pred cccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcccee
Confidence 00 0000 0 000 00122234579999999999999999999999999999
Q ss_pred EEEeC------CCcEEEEEecCHHHHHHHHHHh-----cC-CeeCCeEEEEEecCC
Q 013141 357 VKIPV------GKGCGFVQFANRKDAEVALQKL-----QG-TAIGKQTVRLSWGRN 400 (449)
Q Consensus 357 v~i~~------~~g~afV~F~~~~~A~~A~~~l-----~g-~~~~g~~l~v~~~~~ 400 (449)
+.|+. ++|+|||.|.+..+|..||+.. .| ..|+||.|.|+.+-.
T Consensus 322 a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 322 AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 98875 4799999999999999999887 23 678999999998764
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=5e-35 Score=276.56 Aligned_cols=169 Identities=25% Similarity=0.489 Sum_probs=151.8
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||++||+++|+++|+++|+ .||.|.+|+|++|..+++++|||||+|.++++|++||+.|++..+.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-
Q 013141 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~- 362 (449)
.++++... ....++|||.|||.++++++|+++|++||.|++|+|+++
T Consensus 182 ~~a~p~~~--------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred eccccccc--------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 99865321 112467999999999999999999999999999999865
Q ss_pred -----CcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCCCCC
Q 013141 363 -----KGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGRNPGNKQ 405 (449)
Q Consensus 363 -----~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~~~ 405 (449)
+++|||+|.+.++|++||+.||+..|.+ +.|+|.|++......
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 4899999999999999999999999876 789999998765443
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=7.7e-33 Score=261.69 Aligned_cols=174 Identities=26% Similarity=0.473 Sum_probs=156.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++|+++|+++|+.||+|++|+|++|+.+++++|||||+|.++++|++||+.|++..+. .+.|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~--gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR--NKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC--Ccee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999884 5678
Q ss_pred cccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
+|.++.... .....++|||+|||.++|+++|+++|+ .||+|..+++++++.+++++|+|||+|.+.++|++||+
T Consensus 180 ~V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeecccccc-----cccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 888776432 123456899999999999999999995 99999999999999999999999999999999999999
Q ss_pred HhCCceecC--cceEEeecCCCCC
Q 013141 270 EMNGVYCSS--RPMRIDVATPKKA 291 (449)
Q Consensus 270 ~l~g~~~~g--~~i~v~~~~~~~~ 291 (449)
.||+..+.+ ++|+|.++.....
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HhCCCccCCCceeEEEEECCcccc
Confidence 999998866 6888888876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9e-31 Score=248.74 Aligned_cols=239 Identities=29% Similarity=0.564 Sum_probs=213.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
.+|||+ +++||..|.++|+++|+|+++++.+|. | +-|||||.|.++++|++||..+|...+ .++++++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 999999999999999999999999997 6 999999999999999999999999999 66899999987
Q ss_pred cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
..... |||.||+++++..+|.++|+ .||.|.++++..+.. | ++|| ||+|+++++|.+||+.+||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 44322 99999999999999999996 999999999999965 5 8999 999999999999999999999
Q ss_pred ecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceE
Q 013141 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~ 355 (449)
+.++.|.|.....+..+..... . ....-+.++|.+++.+++++.|.++|..+|.|.
T Consensus 140 l~~kki~vg~~~~~~er~~~~~-----------------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLG-----------------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred cCCCeeEEeeccchhhhccccc-----------------------c-hhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 9999999999888766532111 1 223356789999999999999999999999999
Q ss_pred EEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 356 SVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 356 ~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
++.+++ .++++||.|.+.++|..|++.||+..+.+..+.|.-+..
T Consensus 196 s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 196 SVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 999987 379999999999999999999999999999999987765
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.3e-30 Score=230.03 Aligned_cols=281 Identities=20% Similarity=0.338 Sum_probs=214.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
--|+|||+.|.+++.|+.|+..|.+||+|++|.+..|+.|++++|||||||+-+|.|..|++.+|+..+.+ +.|++..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG--RNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC--ccccccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999966 4555543
Q ss_pred cccCCCCC------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 013141 194 ATFSGSDR------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 194 ~~~~~~~~------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A 267 (449)
...-.... ..+...-++|||..+.++++++||+..| +.||+|..+.+-+++..+..|||+|++|.+..+-..|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 32111111 1223445789999999999999999999 6999999999999999899999999999999999999
Q ss_pred HHHhCCceecCcceEEeecCCCCCCchhhcch----h-------------hh-hhhc--------CCCC-----------
Q 013141 268 MTEMNGVYCSSRPMRIDVATPKKASGYQQQYS----S-------------QA-LVLA--------GGPG----------- 310 (449)
Q Consensus 268 ~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~----~-------------~~-~~~~--------~~~~----------- 310 (449)
|..||-..++|..|+|-.+............. . .. .... +.++
T Consensus 269 iasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 99999999999999998775433211000000 0 00 0000 0000
Q ss_pred ---------------------CCC-------------------CCcCC---------------C----------------
Q 013141 311 ---------------------SNG-------------------ARVQG---------------S---------------- 319 (449)
Q Consensus 311 ---------------------~~~-------------------~~~~~---------------~---------------- 319 (449)
... ....+ .
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 000 00000 0
Q ss_pred ----------CCCCCCCCcEEEEcCC--CCCCC---HhHHHhhccccCceEEEEEeCCC----------cEEEEEecCHH
Q 013141 320 ----------QSDGESNNATIFVGAL--DSDVS---DEDLREPFSQFGEILSVKIPVGK----------GCGFVQFANRK 374 (449)
Q Consensus 320 ----------~~~~~~~~~~l~V~nl--p~~~t---~~~L~~~f~~~G~v~~v~i~~~~----------g~afV~F~~~~ 374 (449)
..-....+++|.++|+ |.+++ +.+|.+.|.+||.|.+|.|...+ -..||+|+...
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 0001234567888887 44444 47899999999999999987532 35799999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEe
Q 013141 375 DAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 375 ~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
++.+|.++|+|+.|+|+++..+.
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHHHhhccceecCceeehhh
Confidence 99999999999999999987664
No 19
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=240.16 Aligned_cols=265 Identities=29% Similarity=0.460 Sum_probs=216.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccC
Q 013141 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (449)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~ 197 (449)
|||.||+++++.++|.++|+.||.|++|++.++.+ | ++|| ||+|+++++|.+|++.+|+..+.+..+.+-+...+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999964 5 9999 9999999999999999999999654443333222211
Q ss_pred CCCCc-cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 198 GSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 198 ~~~~~-~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
..... .....-..+++.+++.+.+.+.|.++|. .+|.|..+.++.+.. +.+++|+||.|.+.++|..|++.|++..+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcC
Confidence 11111 1223345789999999999999999995 999999999999855 66999999999999999999999999999
Q ss_pred cCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE
Q 013141 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (449)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~ 356 (449)
.+..+.|..+..+..+........... ............|||.||+..++++.|+++|+.||.|.+
T Consensus 234 ~~~~~~V~~aqkk~e~~~~l~~~~~~~--------------~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s 299 (369)
T KOG0123|consen 234 GDKELYVGRAQKKSEREAELKRKFEQE--------------FAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITS 299 (369)
T ss_pred CccceeecccccchhhHHHHhhhhHhh--------------hhhccccccccccccccCccccchhHHHHHHhcccceee
Confidence 999999998887433321111100000 001222445678999999999999999999999999999
Q ss_pred EEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 357 VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 357 v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
++|+. .+|++||.|.+.++|.+|+..+|+..+.++.|.|.++...
T Consensus 300 ~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 300 AKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred EEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 99886 3799999999999999999999999999999999988743
No 20
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.97 E-value=2.9e-30 Score=243.27 Aligned_cols=285 Identities=18% Similarity=0.346 Sum_probs=217.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.+...++||+--|+-.+++.||.+||+.+|.|.+|.+|.|+.+++++|.|||+|.+.+.+-.|+ .|.|..+.+ .+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg--~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLG--VPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccC--ceeE
Confidence 3456789999999999999999999999999999999999999999999999999999999999 789988855 4444
Q ss_pred ccccccCCCCC---------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCH
Q 013141 191 LNWATFSGSDR---------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (449)
Q Consensus 191 ~~~~~~~~~~~---------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~ 261 (449)
+.......... .....+-..|||+||.++++++.|+.+| +.||.|..|.+.+|..||.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 43332111100 0111222339999999999999999999 6999999999999998999999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEEeecCCCCCCchh-----hc---------------chhhhhhhcCCC------------
Q 013141 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ-----QQ---------------YSSQALVLAGGP------------ 309 (449)
Q Consensus 262 ~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~------------ 309 (449)
++|.+|++.|||.++.|+.|+|.....+...... .. .........+..
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999999999999999999876554322211 00 000000000000
Q ss_pred -----------C--C--CCCCcCCCCCCCCCCCcEEEEcCCCCC--CC--------HhHHHhhccccCceEEEEEeCCC-
Q 013141 310 -----------G--S--NGARVQGSQSDGESNNATIFVGALDSD--VS--------DEDLREPFSQFGEILSVKIPVGK- 363 (449)
Q Consensus 310 -----------~--~--~~~~~~~~~~~~~~~~~~l~V~nlp~~--~t--------~~~L~~~f~~~G~v~~v~i~~~~- 363 (449)
. . .........+.-...+.|+.|.|+=.. .| .+||.+.|.+||.|..|.+.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 0 0 000000001111256678888888332 22 38899999999999999998865
Q ss_pred cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 364 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 364 g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
|++||.|.+.++|..|+.+|||.+|.|+.|..+|-.
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 999999999999999999999999999999999854
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3.1e-28 Score=241.60 Aligned_cols=227 Identities=19% Similarity=0.248 Sum_probs=173.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCC-cEEEEEEe-cCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~-~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
..++|||+|||+++++++|.++|+.++. ++++.++. ....++++|||||+|.+.++|.+|++.|+...+...++.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4688999999999999999999999864 55554443 234567899999999999999999998876554445678999
Q ss_pred cccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~--g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
+|+.+............++|||+||+.++|+++|+++|+ .| |+|++|.+++ +||||+|.+.++|++|++
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHH
Confidence 998876554444444567899999999999999999995 99 9999998763 499999999999999999
Q ss_pred HhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhcc
Q 013141 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (449)
Q Consensus 270 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 349 (449)
.||+..|+|+.|+|+++.+............ ..+.................+.+.++++.|+++..+++.|.++|.
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg----~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKKSYVRYTRG----TGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcccccccccc----cCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 9999999999999999988654321110000 000000000111112223445688999999999999999999999
Q ss_pred ccCc
Q 013141 350 QFGE 353 (449)
Q Consensus 350 ~~G~ 353 (449)
.+|.
T Consensus 364 ~~g~ 367 (578)
T TIGR01648 364 MPGP 367 (578)
T ss_pred cCcc
Confidence 8875
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.1e-28 Score=244.95 Aligned_cols=176 Identities=20% Similarity=0.431 Sum_probs=151.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||+||++++++++|+++|. .||.|.+|++++|+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~-~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFD-PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-ccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 457899999999999999999995 9999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----- 361 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~----- 361 (449)
........ ............++|||+||+.++++++|+++|+.||.|.+++|.+
T Consensus 185 ~~~p~a~~---------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 185 SNMPQAQP---------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred cccccccc---------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Confidence 33211100 0000011122457899999999999999999999999999999986
Q ss_pred -CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 362 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 362 -~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
.+|||||+|.+.++|.+|++.||+..|+|+.|+|.++..+...
T Consensus 244 ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 244 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 3689999999999999999999999999999999999976544
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.3e-29 Score=213.36 Aligned_cols=169 Identities=30% Similarity=0.570 Sum_probs=155.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
.+--|||+.|..+++.++|++.|.+||+|.+++|++|.+|+++|||+||.|.+.++|++||..|+|.-| ..|.||-.|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNW 138 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNW 138 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeeccc
Confidence 356799999999999999999999999999999999999999999999999999999999999999998 568899999
Q ss_pred cccCCCCCc-----------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 013141 194 ATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (449)
Q Consensus 194 ~~~~~~~~~-----------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~ 262 (449)
+..+..+.. ....++++||++||+.-+|+++|++.|+ .||.|.+|++.++ +||+||.|.+.|
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tkE 211 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETKE 211 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecchh
Confidence 987764432 3456788999999999999999999996 9999999999988 679999999999
Q ss_pred HHHHHHHHhCCceecCcceEEeecCCCCC
Q 013141 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 263 ~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
.|..||..+|+.+|.|..+++.|.+....
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999987654
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2e-28 Score=237.67 Aligned_cols=177 Identities=26% Similarity=0.494 Sum_probs=156.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
..++|||+|||+++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.+....+++.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999988777888877
Q ss_pred cccCCCCCc-----------------------------------------------------------------------
Q 013141 194 ATFSGSDRR----------------------------------------------------------------------- 202 (449)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------------------- 202 (449)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643220000
Q ss_pred ----------------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 203 ----------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
.......+|||+|||+++++++|+++|+ .||.|.++++++|..++.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011123699999999999999999995 99999999999999899999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCCCC
Q 013141 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
||+.|||..|+|+.|+|.|...+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999988753
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=234.08 Aligned_cols=257 Identities=23% Similarity=0.389 Sum_probs=206.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...+.|+|+|||..+..++|..+|..||.|..|.+.+. |. -++|+|.+..+|..|++.|....+ ...++.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 44578999999999999999999999999999955432 21 499999999999999999887766 33445454
Q ss_pred ccccCCCC----------------------C------------c-----------cccCCCceEEEcCCCCCCCHHHHHH
Q 013141 193 WATFSGSD----------------------R------------R-----------TEACSDLSIFVGDLAPDVTDSILQE 227 (449)
Q Consensus 193 ~~~~~~~~----------------------~------------~-----------~~~~~~~~l~v~~lp~~~t~~~l~~ 227 (449)
|+....-. + . ......++|||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 44311000 0 0 0001123499999999999999999
Q ss_pred HHhhhCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhh
Q 013141 228 TFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALV 304 (449)
Q Consensus 228 ~f~~~~g~v~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~ 304 (449)
.|. ..|.|.++.|.+.+.. -.+.||+||+|.+.++|.+|++.|+|..++|+.|.|+++..+....
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~----------- 602 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST----------- 602 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc-----------
Confidence 996 8999999988765432 1356999999999999999999999999999999999998332210
Q ss_pred hcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHH
Q 013141 305 LAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEV 378 (449)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~ 378 (449)
.+.........+.|+|.|||+..+..+|+++|..||.|.+|+|+.. +|||||+|-++++|.+
T Consensus 603 ------------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 603 ------------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred ------------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 0112223344789999999999999999999999999999999873 7999999999999999
Q ss_pred HHHHhcCCeeCCeEEEEEecCCC
Q 013141 379 ALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 379 A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
|+.+|..+.|.||+|.++|+++.
T Consensus 671 A~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHhhcccceechhhheehhccc
Confidence 99999999999999999999964
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.3e-28 Score=220.71 Aligned_cols=173 Identities=27% Similarity=0.498 Sum_probs=153.0
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 280 (449)
.+.+..++||+-||..++|.||+++| |+||.|.+|.|++|+.++.++|+|||+|.+.++|.+|+.+|++... ...+
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34566789999999999999999999 6999999999999999999999999999999999999999998664 4567
Q ss_pred eEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEe
Q 013141 281 MRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP 360 (449)
Q Consensus 281 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~ 360 (449)
|.|++++.+.++ -...++|||+-|+..++|+||+++|++||.|++|.|+
T Consensus 109 vqvk~Ad~E~er-------------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 109 VQVKYADGERER-------------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred eeecccchhhhc-------------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 889998877554 1346789999999999999999999999999999999
Q ss_pred C-----CCcEEEEEecCHHHHHHHHHHhcCCe-eCC--eEEEEEecCCCCCCCCCC
Q 013141 361 V-----GKGCGFVQFANRKDAEVALQKLQGTA-IGK--QTVRLSWGRNPGNKQWRG 408 (449)
Q Consensus 361 ~-----~~g~afV~F~~~~~A~~A~~~l~g~~-~~g--~~l~v~~~~~~~~~~~~~ 408 (449)
+ +||||||+|++++.|..||+.|||.. ++| ..|.|+|+...+.+..+.
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 8 48999999999999999999999984 555 579999999876655433
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.7e-27 Score=219.28 Aligned_cols=279 Identities=24% Similarity=0.430 Sum_probs=202.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
.-+|+|+||||.+.+.+|..+|+.||.|++|.|.+.+ .|+..|||||.|....+|..||+.+|+..|. +++|-++|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~--gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKID--GRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceec--CceeEEeee
Confidence 5689999999999999999999999999999999765 5777799999999999999999999999994 578888887
Q ss_pred ccCCC-------------------------------------------CC--c---------------------c-----
Q 013141 195 TFSGS-------------------------------------------DR--R---------------------T----- 203 (449)
Q Consensus 195 ~~~~~-------------------------------------------~~--~---------------------~----- 203 (449)
-.... +. . .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 42100 00 0 0
Q ss_pred --------------ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 204 --------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 204 --------------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
......+|||+|||+++|+++|.+.|+ .||+|..+.++.++.|++++|.|||.|.+..+|..||+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 001125899999999999999999996 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceecCcceEEeecCCCCCCchhhcch-------hhhhhhcCC-------CCCCCCCc-------------
Q 013141 270 EM-----NG-VYCSSRPMRIDVATPKKASGYQQQYS-------SQALVLAGG-------PGSNGARV------------- 316 (449)
Q Consensus 270 ~l-----~g-~~~~g~~i~v~~~~~~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~------------- 316 (449)
.. .| ..+.||.|.|..+..+.......... ...++.... +.......
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 76 23 67899999999998775432111110 011111110 00000000
Q ss_pred --CCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccc----c-CceEE-EEEeC---------CCcEEEEEecCHHHHHHH
Q 013141 317 --QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ----F-GEILS-VKIPV---------GKGCGFVQFANRKDAEVA 379 (449)
Q Consensus 317 --~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~----~-G~v~~-v~i~~---------~~g~afV~F~~~~~A~~A 379 (449)
.-..+......+.|.|.|||..++...|..++.. | +.|.. ++.+. +.+++||.|...+.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 0011222334567999999999999998877654 2 22222 22221 379999999999999999
Q ss_pred HHHhcCCeeCCeEEEEEecCCC
Q 013141 380 LQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 380 ~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
+..+ |. + +.-.|.|+...
T Consensus 513 lk~~-G~-l--kq~~Vefev~~ 530 (678)
T KOG0127|consen 513 LKVL-GV-L--KQAKVEFEVDG 530 (678)
T ss_pred hhcc-cc-c--ccceEEEEecc
Confidence 9866 22 1 34455665543
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=7.9e-26 Score=227.07 Aligned_cols=174 Identities=27% Similarity=0.488 Sum_probs=149.1
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||.++++++|+++|+ .||.|.+|.++++..+++++|||||+|.+.++|.+|| .|+|..+.|++|.|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~-~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFS-KVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 34567999999999999999999995 9999999999999999999999999999999999999 599999999999998
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--- 361 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--- 361 (449)
++........... . ......+..++|||+|||..+++++|+++|+.||.|.+|.|..
T Consensus 164 ~~~~~~~~~~~~~----------~----------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~ 223 (457)
T TIGR01622 164 SSQAEKNRAAKAA----------T----------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE 223 (457)
T ss_pred ecchhhhhhhhcc----------c----------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC
Confidence 8654432210000 0 0000122378999999999999999999999999999999984
Q ss_pred ---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 362 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 362 ---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
.+++|||+|.+.++|.+|++.|+|..|.|+.|+|.|+..
T Consensus 224 ~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 368999999999999999999999999999999999774
No 29
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=9.6e-25 Score=203.41 Aligned_cols=274 Identities=21% Similarity=0.282 Sum_probs=185.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.....|.+++|||++|++||.+||+.| .|.++.+.+. +|+..|.|||+|.++|++++||++ +...+.. +-|.|-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~--RYIEVf 81 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGH--RYIEVF 81 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCC--ceEEEE
Confidence 456679999999999999999999999 5788766664 699999999999999999999964 5544432 333332
Q ss_pred ccccCCC---CCc---cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHH
Q 013141 193 WATFSGS---DRR---TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERS 265 (449)
Q Consensus 193 ~~~~~~~---~~~---~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~ 265 (449)
.+...+. .++ ........|.+++||+.||++||.++|+ -.-.|.. |.++.+ ..+++.|-|||.|++.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeecc-CCCCcccceEEEecCHHHHH
Confidence 2221111 111 1224567899999999999999999995 5554544 445555 44779999999999999999
Q ss_pred HHHHHhCCceecCcceEEeecCCCCCCchh----------hcchh----hh-hhhcCCC---------------------
Q 013141 266 RAMTEMNGVYCSSRPMRIDVATPKKASGYQ----------QQYSS----QA-LVLAGGP--------------------- 309 (449)
Q Consensus 266 ~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~----------~~~~~----~~-~~~~~~~--------------------- 309 (449)
.|+ .-+...|+.+.|+|..+.....+... ..... .. .......
T Consensus 160 ~Al-~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~ 238 (510)
T KOG4211|consen 160 IAL-GRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSR 238 (510)
T ss_pred HHH-HHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccccc
Confidence 998 46667788889988776543211110 00000 00 0000000
Q ss_pred ---------------------CCC-CCCcC---CCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---
Q 013141 310 ---------------------GSN-GARVQ---GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--- 361 (449)
Q Consensus 310 ---------------------~~~-~~~~~---~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--- 361 (449)
... ..... ............++..+||+..++.+|.++|+.. ....|+|..
T Consensus 239 ~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~d 317 (510)
T KOG4211|consen 239 YPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPD 317 (510)
T ss_pred CccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCC
Confidence 000 00000 0001111223788999999999999999999875 334555543
Q ss_pred --CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 362 --GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 362 --~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
..+.|+|+|.|.++|..|+.. ++..+..+.|.+-.
T Consensus 318 Gr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred CccCCcceeecccchhhHhhhcc-CCcccCcceeeecc
Confidence 368999999999999999864 77778777776644
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=204.70 Aligned_cols=203 Identities=20% Similarity=0.353 Sum_probs=163.6
Q ss_pred EEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEE
Q 013141 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (449)
Q Consensus 162 V~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~ 241 (449)
-...+.++|.++|.+-.+..|....- ..++..+............+.|||+.||.++.|++|.-+| ++.|+|.+++|
T Consensus 39 ~~~~~~eaal~al~E~tgy~l~ve~g--qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplf-EkiG~I~elRL 115 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERTGYTLVVENG--QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLF-EKIGKIYELRL 115 (506)
T ss_pred cccccHHHHHHHHHHhcCceEEEecc--ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHH-HhccceeeEEE
Confidence 33445788888887656554422111 1111222222333444667899999999999999999999 69999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-cCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCC
Q 013141 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQ 320 (449)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (449)
++|+.+|.+||||||+|.+.++|.+||+.||+.+| .|+.|.|+.+...
T Consensus 116 MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------- 164 (506)
T KOG0117|consen 116 MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------- 164 (506)
T ss_pred eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-------------------------------
Confidence 99999999999999999999999999999999998 8899999888664
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCc-eEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhc--CCeeCC
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGE-ILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQ--GTAIGK 390 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~-------~~g~afV~F~~~~~A~~A~~~l~--g~~~~g 390 (449)
++|||+|||...++++|++.|++.++ |++|.+.. ++|||||+|.|...|..|..+|- ...+-|
T Consensus 165 -------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 165 -------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred -------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 67999999999999999999999874 77777653 58999999999999999998883 335779
Q ss_pred eEEEEEecCCCCCCC
Q 013141 391 QTVRLSWGRNPGNKQ 405 (449)
Q Consensus 391 ~~l~v~~~~~~~~~~ 405 (449)
..+.|+|+.+.....
T Consensus 238 n~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPD 252 (506)
T ss_pred CcceeeccCcccCCC
Confidence 999999999754443
No 31
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=3.6e-24 Score=195.76 Aligned_cols=170 Identities=17% Similarity=0.289 Sum_probs=135.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-ccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
...|.+||.|||+++...+|+++|. +.|+|+-|.++.|. +|+++|||.|||+++|.+++|++.|+...+.++...++-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999996 57899999999996 699999999999999999999999999988655444332
Q ss_pred cccc----------------------------cC---------------CC-CCc-------------------------
Q 013141 192 NWAT----------------------------FS---------------GS-DRR------------------------- 202 (449)
Q Consensus 192 ~~~~----------------------------~~---------------~~-~~~------------------------- 202 (449)
+... -+ .+ ...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 2210 00 00 000
Q ss_pred ---------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 203 ---------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 203 ---------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
..+....++||.||...+....|++.|. -.|.|..|.+-.|+. +.++|++.++|.++-+|..||..|++
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 0112345799999999999999999995 899999999998866 68999999999999999999999987
Q ss_pred ceecCcceEEee
Q 013141 274 VYCSSRPMRIDV 285 (449)
Q Consensus 274 ~~~~g~~i~v~~ 285 (449)
.-+.+++..+..
T Consensus 279 ~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLFDRRMTVRL 290 (608)
T ss_pred CCCccccceeec
Confidence 666666655554
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=6.1e-26 Score=184.42 Aligned_cols=174 Identities=29% Similarity=0.568 Sum_probs=155.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
....||||+||+..++++-|.++|-+.|+|+++.+.+|+.+...+|||||+|.++|+|+-|++-||...| .+++|++.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRVN 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999997777 56888887
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
.+... ........+|||+||.+.+++..|.+.|+ .||.+.. -.+++++.|+.+++++||-|++.+.+.+|+..+
T Consensus 85 kas~~----~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 85 KASAH----QKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ecccc----cccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 76621 12223447899999999999999999997 9998766 378899999999999999999999999999999
Q ss_pred CCceecCcceEEeecCCCCCCc
Q 013141 272 NGVYCSSRPMRIDVATPKKASG 293 (449)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~~~~ 293 (449)
|+..++.++++|+++..+...+
T Consensus 160 ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccchhcCCceEEEEEEecCCCc
Confidence 9999999999999998887665
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=190.58 Aligned_cols=166 Identities=27% Similarity=0.553 Sum_probs=150.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....+.|.|.-||..+|.|||+.+|+ ..|+|+++++++|+.+|.+-||+||.|.+++||++|+..|||..+..+.|+|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~-SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhh-cccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34566788989999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--- 361 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--- 361 (449)
++++.... .....|||++||..+|..||.++|++||.|.--+|+.
T Consensus 117 yARPSs~~--------------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 117 YARPSSDS--------------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred eccCChhh--------------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 99987542 3356799999999999999999999999987777764
Q ss_pred ---CCcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCCC
Q 013141 362 ---GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGRNPGN 403 (449)
Q Consensus 362 ---~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~ 403 (449)
++|.+||+|+.+++|+.||+.|||..=-| ..|.|.|+.++..
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 48999999999999999999999998665 5799999998743
No 34
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.93 E-value=2.2e-24 Score=195.82 Aligned_cols=281 Identities=19% Similarity=0.294 Sum_probs=198.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
..+++.|.+||||++++|+||.+++.+||.|..+.+++.++ .||++|.|+++|...+.......-.-++.++.+
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 35789999999999999999999999999999999998765 799999999999986654444333334444444
Q ss_pred cccccCC---------------------------------CC--CccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCe
Q 013141 192 NWATFSG---------------------------------SD--RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236 (449)
Q Consensus 192 ~~~~~~~---------------------------------~~--~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v 236 (449)
.++.... .. ......+-.+++|.++-+.+|.|-|..+|+ +||.|
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS-~fG~V 177 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS-KFGFV 177 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh-hccee
Confidence 3332110 00 001112234577899999999999999996 99999
Q ss_pred eEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCcee--cCcceEEeecCCCCCCchhhcchhhh-----hhhc--
Q 013141 237 KGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATPKKASGYQQQYSSQA-----LVLA-- 306 (449)
Q Consensus 237 ~~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~-----~~~~-- 306 (449)
..|...... .+| |+|+|.+.+.|..|...|+|..| +-+.|+|+++.-....-.-...+++. .-.+
T Consensus 178 lKIiTF~Kn-----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 178 LKIITFTKN-----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEEecc-----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 998766442 233 89999999999999999999888 44567777765432111000000000 0000
Q ss_pred -------------------CCCCCCC-----CCcCCCCCCCCCCCcEEEEcCCCC-CCCHhHHHhhccccCceEEEEEeC
Q 013141 307 -------------------GGPGSNG-----ARVQGSQSDGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPV 361 (449)
Q Consensus 307 -------------------~~~~~~~-----~~~~~~~~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~ 361 (449)
+.+.... ..............++|.|.||.. .+|.+.|..+|.-||+|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 0000000 000000111111257888888866 589999999999999999999998
Q ss_pred C-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 362 G-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 362 ~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
+ +..|+|.|.|...|..|++.|+|.++.|+.|+|+++|...-.
T Consensus 333 nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 333 NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred cCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 6 568999999999999999999999999999999999975433
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=3.8e-24 Score=173.99 Aligned_cols=167 Identities=29% Similarity=0.514 Sum_probs=148.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
....+|||+||+..++++.|+++|- ..|+|.++.+.+|..+...+|||||+|.++|+|+-||+-||...+.|++|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 4567999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEE-EEeC---
Q 013141 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KIPV--- 361 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~--- 361 (449)
+..... ....+..|||+||.+++++..|.+.|+.||.+.+. ++++
T Consensus 86 as~~~~-------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 86 ASAHQK-------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred cccccc-------------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCccccccc
Confidence 873322 23345789999999999999999999999987662 3333
Q ss_pred ---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 362 ---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 362 ---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
.++++||.|.+.+.+.+|+..|||..++++.|+|+|+.....+
T Consensus 135 tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 135 TGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 3689999999999999999999999999999999999876544
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=184.49 Aligned_cols=276 Identities=18% Similarity=0.289 Sum_probs=210.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccE-EEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.--+++|.|+-+.+|-+.|..+|++||.|..|.-+...+ +| |+|.|.+.+.|..|...|+|..|...++.++++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-----chhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 445688999999999999999999999998887766543 34 999999999999999999999999889999998
Q ss_pred ccccCCCCC--------------------------------------------------------ccccC--CCceEEEc
Q 013141 193 WATFSGSDR--------------------------------------------------------RTEAC--SDLSIFVG 214 (449)
Q Consensus 193 ~~~~~~~~~--------------------------------------------------------~~~~~--~~~~l~v~ 214 (449)
+++-..... ..... .+..|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 875220000 00001 14678888
Q ss_pred CCCC-CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCc
Q 013141 215 DLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (449)
Q Consensus 215 ~lp~-~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 293 (449)
||.. .+|.+.|..+|+ .||+|.+|+|+.++. -.|+|++.+...|..|++.|+|..+.|+.|+|.+++......
T Consensus 304 nln~~~VT~d~LftlFg-vYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFG-VYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHHh-hhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 8875 589999999997 999999999998753 369999999999999999999999999999999998765432
Q ss_pred hhhcchhhhhhhcCCCCCCCCC---cCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE-EEEe-CCCcEEEE
Q 013141 294 YQQQYSSQALVLAGGPGSNGAR---VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIP-VGKGCGFV 368 (449)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~-~~~g~afV 368 (449)
..................-... .........+++.+|++.|+|.++++|+|++.|..-|...+ .++. +++..|++
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~ 457 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALP 457 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeec
Confidence 2222111111111111000000 00011223466789999999999999999999988776544 4443 47899999
Q ss_pred EecCHHHHHHHHHHhcCCeeCC-eEEEEEecCC
Q 013141 369 QFANRKDAEVALQKLQGTAIGK-QTVRLSWGRN 400 (449)
Q Consensus 369 ~F~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~~ 400 (449)
.+.+.|+|..|+..+|...++. ..|||+|+|.
T Consensus 458 q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 458 QLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999985 4999999985
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=9.3e-24 Score=183.78 Aligned_cols=148 Identities=22% Similarity=0.493 Sum_probs=139.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
.+|||+|||..+++.+|+.+| +.||.|.++.|+++ |+||..++...++.||.+|++..|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 379999999999999999999 69999999999965 999999999999999999999999999999999988
Q ss_pred CCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEE
Q 013141 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFV 368 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV 368 (449)
+.. .+++|+|+||.+.++.++|+..|++||.|.+++|. ++++||
T Consensus 74 Ksk----------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fv 117 (346)
T KOG0109|consen 74 KSK----------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFV 117 (346)
T ss_pred cCC----------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEE
Confidence 743 36889999999999999999999999999999999 679999
Q ss_pred EecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 369 QFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 369 ~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
.|+-.++|..|++.|++++|.|++++|..+..+
T Consensus 118 h~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 118 HFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred EEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 999999999999999999999999999998864
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=7.2e-23 Score=208.55 Aligned_cols=174 Identities=18% Similarity=0.308 Sum_probs=143.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|..|++.|++..+.+ ..|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~--~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD--NKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999999855 455665
Q ss_pred ccccCCCCCc-----------------------cccCCCceEEEcCCCCC--C--------CHHHHHHHHhhhCCCeeEE
Q 013141 193 WATFSGSDRR-----------------------TEACSDLSIFVGDLAPD--V--------TDSILQETFSSKYPSVKGA 239 (449)
Q Consensus 193 ~~~~~~~~~~-----------------------~~~~~~~~l~v~~lp~~--~--------t~~~l~~~f~~~~g~v~~i 239 (449)
++........ ....++.+|+|.|+... + ..++|+++|. .||.|..|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 5532211000 01235678899998632 1 2367899995 99999999
Q ss_pred EEeecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 240 ~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
.|+++. .++...|++||+|.+.++|.+|+..|||..|.|+.|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 998753 34556799999999999999999999999999999999998654
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=4.4e-23 Score=189.04 Aligned_cols=174 Identities=26% Similarity=0.454 Sum_probs=148.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
..++|||++|+|+++++.|+++|..||.|.+|.+++|+.+++++||+||+|++.+.+.++|.. ....|++ +.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg--r~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG--RSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCC--cccccee
Confidence 788999999999999999999999999999999999999999999999999999999999954 3344433 3444433
Q ss_pred cccCCCCCc-cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
+.+...... .......+|||++||.+++++++++.| +.||.|..+.++.|..+.+++||+||.|.+++.+++++ ...
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 332222111 122256799999999999999999999 69999999999999999999999999999999999998 577
Q ss_pred CceecCcceEEeecCCCCCC
Q 013141 273 GVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~ 292 (449)
-+.|+++.++|..+.++...
T Consensus 160 f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeeecCceeeEeeccchhhc
Confidence 78899999999999998765
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=9.4e-24 Score=183.78 Aligned_cols=150 Identities=23% Similarity=0.459 Sum_probs=135.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
-+|||+|||..+++.+|+.+|++||.|++|.|+++ |+||..++...|+.|+..|++..|.+ ..|.|+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg--~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHG--VNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecc--eEEEEEecc
Confidence 37999999999999999999999999999999996 99999999999999999999999955 555555444
Q ss_pred cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
.+ ...+++|+|+||.+.++.+||++.| ++||.|.++.|++| |+||.|...++|..||+.|++.+
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 22 4567899999999999999999999 69999999999965 99999999999999999999999
Q ss_pred ecCcceEEeecCCCCC
Q 013141 276 CSSRPMRIDVATPKKA 291 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~ 291 (449)
|.|++++|..++.+-.
T Consensus 137 ~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLR 152 (346)
T ss_pred cccceeeeeeeccccc
Confidence 9999999999887643
No 41
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.89 E-value=1.1e-20 Score=169.97 Aligned_cols=279 Identities=16% Similarity=0.181 Sum_probs=202.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
....+..|.||+|-..++|.||.+.++.||+|.-|.++..+ ..|.|+|++.+.|+.|+..--...+...+...-
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 44578899999999999999999999999999888887765 379999999999999995433333333444444
Q ss_pred ccccccCCCCCc--cccCCCceEEEc--CCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 191 LNWATFSGSDRR--TEACSDLSIFVG--DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 191 ~~~~~~~~~~~~--~~~~~~~~l~v~--~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
+.++.....+++ ....++..|.+. |--+.+|.|-|..+. ...|.|.+|.|++.. ---|+|+|++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkkn-----gVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEecc-----ceeeEEeechhHHHHH
Confidence 444432222222 222334444443 444578999999999 599999999998752 2369999999999999
Q ss_pred HHHHhCCcee--cCcceEEeecCCCCCCchhhcchhh-------------------------------hhhhcCCC--CC
Q 013141 267 AMTEMNGVYC--SSRPMRIDVATPKKASGYQQQYSSQ-------------------------------ALVLAGGP--GS 311 (449)
Q Consensus 267 A~~~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~--~~ 311 (449)
|.+.|||..| +-.+|+|+++++.+.+-.+...... ..+..+.. .+
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999887 5578999999886532211110000 00000000 00
Q ss_pred ------CCCC-----------cCCCCCCCCCCCcEEEEcCCCCC-CCHhHHHhhccccCceEEEEEeCC-CcEEEEEecC
Q 013141 312 ------NGAR-----------VQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFAN 372 (449)
Q Consensus 312 ------~~~~-----------~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~-~g~afV~F~~ 372 (449)
.... .....+.....++++.|.+|... ++.+.|.++|..||.|++|++++. .+.|.|++.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 0000 00112244567889999999875 678999999999999999999986 5999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 373 RKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 373 ~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
..+.++|+..||+..+-|.+|.|.+++-.
T Consensus 335 ~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 335 AYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred HHHHHHHHHHhccCccccceEEEeecccc
Confidence 99999999999999999999999999843
No 42
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.8e-21 Score=185.57 Aligned_cols=274 Identities=21% Similarity=0.325 Sum_probs=201.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcc-----------C-CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (449)
.....+.++|+++|+.++++.+..+|..- | .|+.+.+-..+ .|||++|.+.++|..|+ .++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~ 243 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALD 243 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-ccc
Confidence 34566789999999999999999999763 2 36666665554 59999999999999999 567
Q ss_pred CCCCCCCCCcccccccc----------------cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEe
Q 013141 179 GSLMPNTDQPFRLNWAT----------------FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI 242 (449)
Q Consensus 179 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~ 242 (449)
+..+.+....+...... .............+++||++||..++++.++|++ +.||.+....++
T Consensus 244 ~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~lv 322 (500)
T KOG0120|consen 244 GIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRLV 322 (500)
T ss_pred chhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhheee
Confidence 76664433333221111 0111122344566789999999999999999999 599999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCC
Q 013141 243 IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSD 322 (449)
Q Consensus 243 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (449)
.+..++.++||||.+|.+......|++.|||..++++.+.|..+................ ............
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~--------~~~~i~~~~~q~ 394 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS--------QVPGIPLLMTQM 394 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc--------ccccchhhhccc
Confidence 999999999999999999999999999999999999999999987765432221110000 000000000011
Q ss_pred CCCCCcEEEEcCCCC--C--------CCHhHHHhhccccCceEEEEEeCC---------CcEEEEEecCHHHHHHHHHHh
Q 013141 323 GESNNATIFVGALDS--D--------VSDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~--~--------~t~~~L~~~f~~~G~v~~v~i~~~---------~g~afV~F~~~~~A~~A~~~l 383 (449)
......+|.+.|+=. + ...|+|+..|.+||.|.+|.|.++ .|.+||+|.+.++|++|++.|
T Consensus 395 ~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L 474 (500)
T KOG0120|consen 395 AGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEEL 474 (500)
T ss_pred CCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHc
Confidence 223344444444411 1 123677788999999999999874 489999999999999999999
Q ss_pred cCCeeCCeEEEEEecCC
Q 013141 384 QGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 384 ~g~~~~g~~l~v~~~~~ 400 (449)
+|++|.|+++..+|-..
T Consensus 475 ~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 475 TGRKFANRTVVASYYDE 491 (500)
T ss_pred cCceeCCcEEEEEecCH
Confidence 99999999999998764
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.1e-21 Score=168.71 Aligned_cols=180 Identities=24% Similarity=0.456 Sum_probs=156.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC-CCCCCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~~ 189 (449)
+..+.|+|||+-|...-+|||++.+|..||.|.+|.+.+.. +|.+||||||+|.+..+|..||..|++.. +.+-...+
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 33478899999999999999999999999999999999986 69999999999999999999999999864 66666666
Q ss_pred cccccccCCCCC--------------------------------------------------------------------
Q 013141 190 RLNWATFSGSDR-------------------------------------------------------------------- 201 (449)
Q Consensus 190 ~~~~~~~~~~~~-------------------------------------------------------------------- 201 (449)
.|++++.+.+..
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 666665210000
Q ss_pred --------------------------------------------------------------------------------
Q 013141 202 -------------------------------------------------------------------------------- 201 (449)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (449)
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence
Q ss_pred -------------------------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEE
Q 013141 202 -------------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256 (449)
Q Consensus 202 -------------------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV 256 (449)
..+....+.|||..||.+..+.||...|. .||.|.+.++..|+.|+.+|+|+||
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeE
Confidence 00115568899999999999999999996 9999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCC
Q 013141 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 257 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
.|++..+|.+||..|||..|+=++|+|...++++..
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 999999999999999999999999999998888653
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.4e-21 Score=173.50 Aligned_cols=172 Identities=22% Similarity=0.456 Sum_probs=146.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
++|||+.|.+++.|+.|+..| ..||+|++|.+..|+.|++.+|||||+|+-+|.|..|++.|||..++||.|+|.+...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 589999999999999999999 5999999999999999999999999999999999999999999999999999984432
Q ss_pred CCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------
Q 013141 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------ 362 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------ 362 (449)
-... +.....- ......-.+|||..+.++++++||+.+|+.||+|.+|.+.+.
T Consensus 193 mpQA--QpiID~v-------------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 193 MPQA--QPIIDMV-------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred Cccc--chHHHHH-------------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 2110 0000000 001122468999999999999999999999999999999873
Q ss_pred CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 363 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 363 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
+|++||+|.+..+-..|+..||-..++|..|||-.+-.+.
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 7999999999999999999999999999999998766443
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1e-20 Score=162.85 Aligned_cols=209 Identities=25% Similarity=0.443 Sum_probs=158.7
Q ss_pred CcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
++|.|+.+..+ ......++|||+-|.+.-+|||++.+|. .||+|+++.+++.+. |.+||++||.|.+..+|..
T Consensus 3 rpiqvkpadse-----srg~~drklfvgml~kqq~e~dvrrlf~-pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 3 RPIQVKPADSE-----SRGGDDRKLFVGMLNKQQSEDDVRRLFQ-PFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCccccccccc-----cCCccchhhhhhhhcccccHHHHHHHhc-ccCCcceeEEecCCC-CCCCCceEEEeccchHHHH
Confidence 45555544322 2233678999999999999999999995 999999999999865 8999999999999999999
Q ss_pred HHHHhCCcee---cCcceEEeecCCCCCCchhhcchhhhh-----------------------------------h----
Q 013141 267 AMTEMNGVYC---SSRPMRIDVATPKKASGYQQQYSSQAL-----------------------------------V---- 304 (449)
Q Consensus 267 A~~~l~g~~~---~g~~i~v~~~~~~~~~~~~~~~~~~~~-----------------------------------~---- 304 (449)
||..|+|... ....|.|++++..+++..++....... +
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~ 155 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPM 155 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChh
Confidence 9999999664 456799999988776543332110000 0
Q ss_pred --------------hcCC----C-------------------------CC---------------------CC-------
Q 013141 305 --------------LAGG----P-------------------------GS---------------------NG------- 313 (449)
Q Consensus 305 --------------~~~~----~-------------------------~~---------------------~~------- 313 (449)
...+ + +. +.
T Consensus 156 ~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQ 235 (371)
T KOG0146|consen 156 AAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQ 235 (371)
T ss_pred hhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCC
Confidence 0000 0 00 00
Q ss_pred -----CC----------------------cCC---------CCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEE
Q 013141 314 -----AR----------------------VQG---------SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSV 357 (449)
Q Consensus 314 -----~~----------------------~~~---------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v 357 (449)
.. ... -.....++.|.|||..||-+..+.||...|-.||.|.+.
T Consensus 236 sp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSa 315 (371)
T KOG0146|consen 236 SPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSA 315 (371)
T ss_pred CccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeee
Confidence 00 000 001234678999999999999999999999999999998
Q ss_pred EEeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 358 KIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 358 ~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
++.. +|.|+||.|+++.+|..||.+|||..|+-++|+|...+++.
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 7764 47999999999999999999999999999999999998864
No 46
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=183.34 Aligned_cols=175 Identities=18% Similarity=0.357 Sum_probs=145.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCC---CcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g---~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
++|||.||++++|.++|..+|...|.|.++.|.+.+... .+.|||||+|.+.++|.+|++.|+++.+.+....+++.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999888765321 25599999999999999999999999997765555554
Q ss_pred ccccCCCCCc--cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 193 WATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 193 ~~~~~~~~~~--~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
-..+.....+ .....-++|+|+|||+..+..+++++|. .||.|.+|++++....+.++|||||+|.+..+|.+|++.
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 4111111111 1222246899999999999999999996 999999999998866667899999999999999999999
Q ss_pred hCCceecCcceEEeecCCCCC
Q 013141 271 MNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~~~ 291 (449)
|....+.||.|.++|+.....
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999987654
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=1.1e-19 Score=166.82 Aligned_cols=167 Identities=25% Similarity=0.423 Sum_probs=145.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||++|+++++++.|++.|+ .||+|.++.+++|+.+++++||+||+|++.+...+++ ......|+++.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 568999999999999999999995 9999999999999999999999999999999999888 45567789999999999
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----- 361 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~----- 361 (449)
.++..... ........+|||++||.++++++++++|++||.|..+.++.
T Consensus 83 v~r~~~~~--------------------------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 83 VSREDQTK--------------------------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS 136 (311)
T ss_pred cCcccccc--------------------------cccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc
Confidence 88875421 11122578999999999999999999999999999988875
Q ss_pred -CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 362 -GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 362 -~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.++|+||+|.+.+++.+++. ..-+.|+++.+.|.-+.++.
T Consensus 137 ~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 137 RPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred ccccceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 37999999999999888875 57788999999999887644
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.82 E-value=1.2e-17 Score=150.57 Aligned_cols=271 Identities=18% Similarity=0.178 Sum_probs=206.9
Q ss_pred EcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCC
Q 013141 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGS 199 (449)
Q Consensus 120 v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (449)
|-|--+.+|.+.|..++...|.|.+|.|++.. |. .|.|||++.+.|++|.+.|||..|......++++++++...
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEecc--ce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 44545799999999999999999999998863 33 69999999999999999999999988889999988874310
Q ss_pred CC----------------c-------------------------------------------------------------
Q 013141 200 DR----------------R------------------------------------------------------------- 202 (449)
Q Consensus 200 ~~----------------~------------------------------------------------------------- 202 (449)
.. .
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence 00 0
Q ss_pred cccCCCceEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 203 TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
....+...++|.+|... +.-+.|.++|. .||.|++|++++.+ .|.|+|++.|..+.++|+..||+..+.|.+|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~C-lYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFC-LYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhh-hcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 00123457888899864 55678999996 99999999999874 4689999999999999999999999999999
Q ss_pred EEeecCCCCCCc-----hhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCc-eE
Q 013141 282 RIDVATPKKASG-----YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE-IL 355 (449)
Q Consensus 282 ~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~ 355 (449)
.|.+++-..... +.....+...+.......-..+..........++++|+.-|.|..+||+.|.++|...+. ..
T Consensus 356 ~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~ 435 (494)
T KOG1456|consen 356 NVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPT 435 (494)
T ss_pred EEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcc
Confidence 999987654322 111122222222222223333334445566778999999999999999999999976643 45
Q ss_pred EEEEeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCC------eEEEEEecCCC
Q 013141 356 SVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGK------QTVRLSWGRNP 401 (449)
Q Consensus 356 ~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g------~~l~v~~~~~~ 401 (449)
+|+|... ...+.++|++.++|..||..||...+.+ -.|++-|+...
T Consensus 436 svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 436 SVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred eEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 6666653 3578999999999999999999999875 35677776653
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=6.1e-18 Score=138.00 Aligned_cols=173 Identities=19% Similarity=0.356 Sum_probs=135.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..+++|||+|||.++.+.+|.++|. +||.|..|.+... .....||||+|++..+|+.||..-+|..+++..|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567999999999999999999996 9999999988643 23467999999999999999999999999999999999
Q ss_pred cCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcE
Q 013141 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGC 365 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~ 365 (449)
.......... ...+...+.+ ..................|.|.+||.+-++.||++++.+-|+|....+.++ +.
T Consensus 80 prggr~s~~~-----~G~y~gggrg-Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDR-----RGSYSGGGRG-GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GV 152 (241)
T ss_pred ccCCCccccc-----ccccCCCCCC-CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cc
Confidence 8766422111 0111111111 111111112333445678999999999999999999999999999998875 59
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeC
Q 013141 366 GFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 366 afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
+.|+|...++.+-|+..|+...+.
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeeeehhhHHHHHHhhcccccc
Confidence 999999999999999999888775
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=2.5e-18 Score=142.63 Aligned_cols=82 Identities=24% Similarity=0.544 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||+.+++++|+++|++||.|.+|.|+.+ +++|||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999753 6999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 397 WGRNPGNK 404 (449)
Q Consensus 397 ~~~~~~~~ 404 (449)
|++.+...
T Consensus 110 ~a~~~~~~ 117 (144)
T PLN03134 110 PANDRPSA 117 (144)
T ss_pred eCCcCCCC
Confidence 99876544
No 51
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=7.4e-19 Score=158.70 Aligned_cols=282 Identities=16% Similarity=0.155 Sum_probs=192.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..++...|..|+|||..++.+|..+|.-.-...-...+.....|+..|++.|.|.|.|.-+.|++. +...+ ..+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCcee
Confidence 345667788999999999999999998764444445555556688889999999999999999965 33333 233443
Q ss_pred ccccccC---------CCCCc--cccCCCceEEEcCCCCCCCHHHHHHHHhh---hCCCeeEEEEeecCCCCCcceEEEE
Q 013141 191 LNWATFS---------GSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSS---KYPSVKGAKVIIDSNTGRTKGYGFV 256 (449)
Q Consensus 191 ~~~~~~~---------~~~~~--~~~~~~~~l~v~~lp~~~t~~~l~~~f~~---~~g~v~~i~~~~~~~~~~~~g~afV 256 (449)
+-.+..+ ..+.. .....-..|.+++||+++++.++.++|.. ..+..+.|.+++.+ .|+..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEE
Confidence 3222211 11111 22233446778999999999999999941 13456677777764 4899999999
Q ss_pred EeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCC-cCCCCCCCCCCCcEEEEcCC
Q 013141 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGAR-VQGSQSDGESNNATIFVGAL 335 (449)
Q Consensus 257 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nl 335 (449)
.|..+++|..|+. -|...++-|.|++..++..+....-......... +...+.... .............+|.+++|
T Consensus 212 lfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi--~~~~sp~~p~~p~~~~p~~~~kdcvRLRGL 288 (508)
T KOG1365|consen 212 LFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLI--PGLTSPLLPGGPARLVPPTRSKDCVRLRGL 288 (508)
T ss_pred EecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhcccccc--CCCCCCCCCCCccccCCCCCCCCeeEecCC
Confidence 9999999999994 5556677788888777654322111111110000 000111111 01111222333779999999
Q ss_pred CCCCCHhHHHhhccccCc-eEE--EEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 336 DSDVSDEDLREPFSQFGE-ILS--VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 336 p~~~t~~~L~~~f~~~G~-v~~--v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
|++.+.|||.++|..|-. |.. |++.. ..|.|||+|.+.++|..|..+-|.+.++.+.|.|--+.
T Consensus 289 Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 289 PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 999999999999998853 333 55543 36999999999999999999989888889999987655
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=2e-17 Score=140.73 Aligned_cols=190 Identities=22% Similarity=0.355 Sum_probs=147.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 206 CSDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~----~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
.++.+|||.||+..+..++|++ +|+ .||.|.+|...+ +.+.+|-|||.|.+.+.|-.|++.|+|..+.|+++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 3445999999999999999988 996 999999998884 46789999999999999999999999999999999
Q ss_pred EEeecCCCCCCchhhcc-------h--hhhhhh------cCCCCC--CCCCcCCC-CCCCCCCCcEEEEcCCCCCCCHhH
Q 013141 282 RIDVATPKKASGYQQQY-------S--SQALVL------AGGPGS--NGARVQGS-QSDGESNNATIFVGALDSDVSDED 343 (449)
Q Consensus 282 ~v~~~~~~~~~~~~~~~-------~--~~~~~~------~~~~~~--~~~~~~~~-~~~~~~~~~~l~V~nlp~~~t~~~ 343 (449)
+|.++..+.....+... . ...... ..+... ........ .....+...++++.|||.+++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 99999876432222110 0 000000 000000 00000000 133356778999999999999999
Q ss_pred HHhhccccCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEecC
Q 013141 344 LREPFSQFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGR 399 (449)
Q Consensus 344 L~~~f~~~G~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~ 399 (449)
|..+|.+|.....|+++.. ++.|||+|.+...|..|...|.+..+- ...++|.|++
T Consensus 163 l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999885 689999999999999999999999887 8899998876
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=2.3e-18 Score=163.28 Aligned_cols=175 Identities=27% Similarity=0.447 Sum_probs=144.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...+++|+--|....+..+|.++|+ .+|.|.+|.++.|..+++++|.+||+|.|.+....|| .|.|..+.|.+|.|..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs-~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFS-IVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHH-hhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 4456788888888899999999996 9999999999999999999999999999999999999 7999999999999987
Q ss_pred cCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC---
Q 013141 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--- 362 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~--- 362 (449)
........ . ..... ... .....+...|||+||...+++++|+.+|+.||.|..|.+..+
T Consensus 255 sEaeknr~---a--~~s~a-----------~~~--k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t 316 (549)
T KOG0147|consen 255 SEAEKNRA---A--NASPA-----------LQG--KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET 316 (549)
T ss_pred cHHHHHHH---H--hcccc-----------ccc--cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccc
Confidence 75543320 0 00000 000 000111223999999999999999999999999999999864
Q ss_pred ---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 363 ---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 363 ---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
+||+||+|.+.++|++|++.|||.+|.|+.|+|.....
T Consensus 317 G~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 317 GRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred ccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 79999999999999999999999999999999986553
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.3e-17 Score=134.59 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=125.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..+++|||+|||.++-+.||.++|-+||.|.+|.+...+ ....||||+|++..+|+.||..-++..+++ ..++|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg--~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDG--CRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCc--ceEEEE
Confidence 568999999999999999999999999999999886543 346799999999999999999889988865 456666
Q ss_pred ccccCCCC---------------------CccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcc
Q 013141 193 WATFSGSD---------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251 (449)
Q Consensus 193 ~~~~~~~~---------------------~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~ 251 (449)
++...... -.....+...|.|.+||++-++.+|++... +.|+|-...+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 65432110 012334567899999999999999999996 8999998888876
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 252 GYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 252 g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
|++.|+|...|+.+-|++.|+...+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 3789999999999999999988766
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=2.1e-16 Score=134.57 Aligned_cols=163 Identities=21% Similarity=0.398 Sum_probs=135.7
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 114 ETKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
+..||||+||+..+..++|+. +|++||.|++|...+. .+.+|-|||.|.+.+.|..|+..|+|..+ .+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPF--YGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcc--cCchh
Confidence 344999999999999999988 9999999999988764 67899999999999999999999999998 45677
Q ss_pred cccccccCCCCC---------------------------------------------ccccCCCceEEEcCCCCCCCHHH
Q 013141 190 RLNWATFSGSDR---------------------------------------------RTEACSDLSIFVGDLAPDVTDSI 224 (449)
Q Consensus 190 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~v~~lp~~~t~~~ 224 (449)
++.+++.+.... .....++..+|+.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 776665332110 01135667899999999999999
Q ss_pred HHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecC
Q 013141 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (449)
Q Consensus 225 l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 287 (449)
+..+| +.|....+|+++... ++.|||+|.++..|..|...+.+..|. ...+.|.+++
T Consensus 163 l~~lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999 499999999998653 569999999999999999999998885 7777777654
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=2.9e-16 Score=144.31 Aligned_cols=196 Identities=18% Similarity=0.330 Sum_probs=149.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...+.+||.|||+++.+.+|+++|.++.|+|+.|.++.| .++++||+|.|+|+++|.+++|++.||...+.||+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 344569999999999999999999999999999999999 5699999999999999999999999999999999999987
Q ss_pred cCCCCCCchhhcchhhh---------------hhhcC---CCC-----------------------------------CC
Q 013141 286 ATPKKASGYQQQYSSQA---------------LVLAG---GPG-----------------------------------SN 312 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~---------------~~~~~---~~~-----------------------------------~~ 312 (449)
........+...-.... ..... +.. ..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 76533211110000000 00000 000 00
Q ss_pred CCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCe
Q 013141 313 GARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA 387 (449)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~ 387 (449)
............+....+||.||.+.+..+.|++.|.-.|.|..|.+.- ++++|.++|+++-+|..||..|++.-
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 0000000112345567899999999999999999999999999998764 46999999999999999999999888
Q ss_pred eCCeEEEEEecCCCC
Q 013141 388 IGKQTVRLSWGRNPG 402 (449)
Q Consensus 388 ~~g~~l~v~~~~~~~ 402 (449)
+.+++..++..+...
T Consensus 281 ~~~~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 281 LFDRRMTVRLDRIPD 295 (608)
T ss_pred Cccccceeecccccc
Confidence 888888888866543
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=137.87 Aligned_cols=165 Identities=23% Similarity=0.419 Sum_probs=135.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
..+||++||+.+.+.+|.++|. .||.|.++.+. .||+||+|.+..+|..|+..|++..+++..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~-~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFK-GYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHh-hccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999999999999995 99999999875 45899999999999999999999999999899998886
Q ss_pred CCCCchhhcchhhhhhhcCCCCCCCCC-cCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEE
Q 013141 289 KKASGYQQQYSSQALVLAGGPGSNGAR-VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGF 367 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~af 367 (449)
..... +.+...... ..........+.+.+.|.++...+.+.+|.++|+++|.+....+ ..+++|
T Consensus 73 ~~~~~-------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~ 137 (216)
T KOG0106|consen 73 KRRGR-------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAF 137 (216)
T ss_pred ccccc-------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccc
Confidence 43221 000000000 11222334566788999999999999999999999999966655 578999
Q ss_pred EEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 368 VQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 368 V~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
|+|++.++|.+|++.|++..+.++.|.+..
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eeehhhhhhhhcchhccchhhcCceeeecc
Confidence 999999999999999999999999999943
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.68 E-value=4.9e-15 Score=139.02 Aligned_cols=167 Identities=19% Similarity=0.328 Sum_probs=128.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.....|-+.+||+++|++||.++|+ ..+ |+++.+.+ .+|+..|-|||+|.+++++++|+ +.+...+..+.|+|-.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~-~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFS-NCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHh-cCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 3445688899999999999999996 554 77755554 46899999999999999999999 5777889999999999
Q ss_pred cCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE-EEEeC---
Q 013141 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIPV--- 361 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~--- 361 (449)
+......-..+. .......+..+|.+.+||+.+|++||.+||+..-.|.. |.++.
T Consensus 83 ~~~~e~d~~~~~---------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 83 AGGAEADWVMRP---------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred cCCccccccccC---------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 877655321111 00111145678999999999999999999997644444 22322
Q ss_pred --CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 362 --GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 362 --~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
..+.|||.|++.+.|++|+.. |...|+.+.|.|--+.
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 368999999999999999975 7778888888886443
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=4.5e-16 Score=129.09 Aligned_cols=86 Identities=34% Similarity=0.644 Sum_probs=80.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
...+++|||+||++++|+++|+++|. .||.|.++.+++|..+++++|||||+|.+.++|++|++.|++..|.++.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45677999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++..+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9977543
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.67 E-value=5.2e-15 Score=132.70 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=141.5
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
....++.|||.|||.++|.+++.++|+ ++|.|.. |++.++.. |..+|-|+|.|...+++..||+.|++..
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc
Confidence 345667899999999999999999997 8887754 67888754 9999999999999999999999999999
Q ss_pred ecCcceEEeecCCCCCCchh--------hcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCC----CCC---
Q 013141 276 CSSRPMRIDVATPKKASGYQ--------QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDS----DVS--- 340 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~----~~t--- 340 (449)
+.|+.|+|+.+.....-... .............. -...+. ..........++|.|.|+=. ..+
T Consensus 208 ~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~-~dw~pd-~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKL-LDWRPD-RDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhh-cccCCC-ccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 99999999988653211000 00000000000000 000000 01122334567888888832 112
Q ss_pred ----HhHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 341 ----DEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 341 ----~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
.++|++.+++||.|.+|.|.. ..|.+-|.|.|.++|..||+.|+|+.|+|+.|..+....
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 477888899999999999883 579999999999999999999999999999998876543
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.63 E-value=4.9e-15 Score=124.79 Aligned_cols=183 Identities=21% Similarity=0.365 Sum_probs=126.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcce
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRPM 281 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i 281 (449)
..-++|||.+||.++...||..+|+ .|-..+...+.... ...-.+-+|||+|.+..+|.+|++.|||..| .+..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4467999999999999999999997 66666666554432 2223457999999999999999999999998 56788
Q ss_pred EEeecCCCCCCchhhcchhhh----hh--------h-------cC---CCC-----CCCCCc------------------
Q 013141 282 RIDVATPKKASGYQQQYSSQA----LV--------L-------AG---GPG-----SNGARV------------------ 316 (449)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~~~~----~~--------~-------~~---~~~-----~~~~~~------------------ 316 (449)
++++++........+...... .. . .. ++. ......
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 998887644332221111000 00 0 00 000 000000
Q ss_pred -------C--CCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcC
Q 013141 317 -------Q--GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQG 385 (449)
Q Consensus 317 -------~--~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g 385 (449)
. .........+.+|||-||...++||+|+.+|+.|-....++|.. +...|||+|++.+.|..|+..|.|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 0 00011223456899999999999999999999997766666654 356899999999999999999998
Q ss_pred CeeC
Q 013141 386 TAIG 389 (449)
Q Consensus 386 ~~~~ 389 (449)
..|-
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 7653
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.9e-15 Score=122.77 Aligned_cols=84 Identities=30% Similarity=0.537 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
...++|||+||+..+++.||..+|..||.|.+|.|.+. .|||||+|+|+.+|..|+..|+|+.|+|..|+|++++....
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 34789999999999999999999999999999999874 79999999999999999999999999999999999998765
Q ss_pred CCCCC
Q 013141 404 KQWRG 408 (449)
Q Consensus 404 ~~~~~ 408 (449)
...++
T Consensus 88 ~~r~g 92 (195)
T KOG0107|consen 88 GSRRG 92 (195)
T ss_pred ccccC
Confidence 44333
No 63
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=2.5e-14 Score=128.32 Aligned_cols=172 Identities=17% Similarity=0.289 Sum_probs=137.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (449)
....+.|||.|||.++|.+++.++|+.||.|.+ |++.++.. |..+|-|+|.|.-.++++.|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445567999999999999999999999997653 89999964 999999999999999999999999999994
Q ss_pred CCCCcccccccccCCC---------------------------------CCccccCCCceEEEcCCC----CCCC-----
Q 013141 184 NTDQPFRLNWATFSGS---------------------------------DRRTEACSDLSIFVGDLA----PDVT----- 221 (449)
Q Consensus 184 ~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~v~~lp----~~~t----- 221 (449)
++.|+|..++.... .........++|.+.|+= ...+
T Consensus 210 --g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 --GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred --CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 67777776653210 111233456788888862 1222
Q ss_pred --HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCC
Q 013141 222 --DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 222 --~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
.++|++.. ++||.|..|.|.-. .+.|.+.|.|.+.++|..||+.|+|+.|+||.|..+.++.+..
T Consensus 288 dlkedl~eec-~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 288 DLKEDLTEEC-EKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHH-HHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 35667778 49999999988643 3578999999999999999999999999999999999877643
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.8e-16 Score=133.01 Aligned_cols=152 Identities=19% Similarity=0.352 Sum_probs=127.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
..|||++||+.+.+.+|..||..||.+.+|.+.. ||+||+|.+..+|..|+..+++..+.+.. +.++|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999999998855 58999999999999999999999997755 6777776
Q ss_pred cCC---------------CCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 013141 196 FSG---------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (449)
Q Consensus 196 ~~~---------------~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~ 260 (449)
... ..........+.+.|.+++..+.+.+|.+.|+ .+|.+....+ ..+++||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 321 01112345567899999999999999999996 9999854444 24589999999
Q ss_pred HHHHHHHHHHhCCceecCcceEEeec
Q 013141 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 261 ~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
.+++.+|+..|++..+.++.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999433
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.6e-15 Score=127.58 Aligned_cols=84 Identities=30% Similarity=0.480 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
..+..+|.|.||+.+++|++|+++|.+||.|.+|.+.+|++||.++|||||.|.+.++|.+||+.|||.-+ ....++|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILrv 263 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILRV 263 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEEE
Confidence 34788999999999999999999999999999999999999999999999999999999999999999888 4578999
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
+|+++.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 998764
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=127.42 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.+..-++|||++|+|+++.|+|+++|++||+|++..|+.|+.+||+|||+||+|+|.++|++|++. -.-.|+++...+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 445667899999999999999999999999999999999999999999999999999999999965 4445655544444
Q ss_pred c
Q 013141 191 L 191 (449)
Q Consensus 191 ~ 191 (449)
+
T Consensus 87 l 87 (247)
T KOG0149|consen 87 L 87 (247)
T ss_pred h
Confidence 4
No 67
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.58 E-value=3.2e-14 Score=119.94 Aligned_cols=160 Identities=18% Similarity=0.255 Sum_probs=120.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEe-cCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCC-CCCcc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPF 189 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~-~~~~~ 189 (449)
....|||||.+||.++...||..+|..|--.+.+.+.. ++....++-+|||.|.+..+|.+|+..|||..++- ....+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 45689999999999999999999999987666655544 33333456899999999999999999999988753 34556
Q ss_pred cccccccCCCCCcc------------------------------------------------------------------
Q 013141 190 RLNWATFSGSDRRT------------------------------------------------------------------ 203 (449)
Q Consensus 190 ~~~~~~~~~~~~~~------------------------------------------------------------------ 203 (449)
+++.++......+.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 66655422100000
Q ss_pred ---------------ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 013141 204 ---------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (449)
Q Consensus 204 ---------------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 268 (449)
....-.+|||.||.++++|++|+.+|+ .|.....++|... .....||++|++.+.|..|+
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR----GGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC----CCcceEeecHHHHHHHHHHH
Confidence 001113699999999999999999995 9988776666432 12458999999999999999
Q ss_pred HHhCCcee
Q 013141 269 TEMNGVYC 276 (449)
Q Consensus 269 ~~l~g~~~ 276 (449)
..|.|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99999776
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.2e-15 Score=113.23 Aligned_cols=82 Identities=28% Similarity=0.565 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
...+++|||+||++.++||.|.++|+.+|+|..|.|--|+.+..+-|||||+|.+.++|+.||+.+++..+ ..++|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999 4577887
Q ss_pred cccc
Q 013141 192 NWAT 195 (449)
Q Consensus 192 ~~~~ 195 (449)
+|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7764
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.7e-14 Score=121.49 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=80.4
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|-|.||+.++++++|+++|. +||.|.++.|.+|+.||.+||||||.|.+.++|.+||+.|||.-++.--|+|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 013141 285 VATPK 289 (449)
Q Consensus 285 ~~~~~ 289 (449)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
No 70
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=2.2e-14 Score=119.52 Aligned_cols=77 Identities=30% Similarity=0.543 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
-+....|.|.||.+-++.++|+.+|++||.|-+|.|+++ +|||||.|.+..+|++|+++|+|..|+|+.|+|.+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 344678999999999999999999999999999999974 69999999999999999999999999999999998
Q ss_pred cCC
Q 013141 398 GRN 400 (449)
Q Consensus 398 ~~~ 400 (449)
++=
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 874
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=127.85 Aligned_cols=81 Identities=28% Similarity=0.471 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
......++|+|+|||+...+-||+.+|.+||+|.+|+|+. +|||+||+|++.+||++|.++|||..++||+|.|..
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3455678999999999999999999999999999999986 489999999999999999999999999999999999
Q ss_pred cCCCC
Q 013141 398 GRNPG 402 (449)
Q Consensus 398 ~~~~~ 402 (449)
++.+-
T Consensus 171 ATarV 175 (376)
T KOG0125|consen 171 ATARV 175 (376)
T ss_pred cchhh
Confidence 88643
No 72
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=4.1e-14 Score=102.93 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCC
Q 013141 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (449)
Q Consensus 118 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (449)
|||+|||+++|+++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|++|++.+++..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 578999999999999999999999999988754
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.50 E-value=1.5e-13 Score=99.97 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 211 l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
|||+|||.++|+++|+++|+ .||.|..+.+..+ .++..+++|||+|.+.++|++|++.|++..+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999995 8999999999998 6788999999999999999999999999999999885
No 74
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=123.14 Aligned_cols=98 Identities=21% Similarity=0.380 Sum_probs=80.8
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 107 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
.+.......++|+|+|||+..-|.||+.+|.+||.|++|.||-+. -.+|||+||+|++.++|++|-++||++.+.+
T Consensus 88 t~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG-- 163 (376)
T KOG0125|consen 88 TNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG-- 163 (376)
T ss_pred CcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec--
Confidence 344455678899999999999999999999999999999999974 4689999999999999999999999999955
Q ss_pred CcccccccccCCCCCccccCCC
Q 013141 187 QPFRLNWATFSGSDRRTEACSD 208 (449)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~ 208 (449)
+.|+|+.+...-..++.+..+.
T Consensus 164 RkIEVn~ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKKKKVLPY 185 (376)
T ss_pred eEEEEeccchhhccCCcccCCC
Confidence 6777777765544444444333
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=6e-13 Score=124.95 Aligned_cols=150 Identities=23% Similarity=0.364 Sum_probs=113.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
.++|||+|||+++++++|+++|..||.|..+.+..++.+++++|||||+|.+.++|..|+..+++..+.+ +.+++.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~--~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG--RPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC--ceeEeecc
Confidence 6999999999999999999999999999999999998899999999999999999999999999998855 55555553
Q ss_pred c----cCCCCC---------------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEE
Q 013141 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (449)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~af 255 (449)
. ...... .........+++.+++..++..++...|. .++.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 2 111111 12234456799999999999999999995 999996666655443333333333
Q ss_pred EEeCCHHHHHHH
Q 013141 256 VRFGDENERSRA 267 (449)
Q Consensus 256 V~f~~~~~A~~A 267 (449)
+.+.....+...
T Consensus 272 ~~~~~~~~~~~~ 283 (306)
T COG0724 272 VGNEASKDALES 283 (306)
T ss_pred cchhHHHhhhhh
Confidence 333333333333
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=117.87 Aligned_cols=81 Identities=36% Similarity=0.542 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..-++|||++|++.++.|+|++.| |.||+|.+..|+.|+.++++|||+||+|.|.++|.+||+.-+ -.|+||+..++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 345689999999999999999999 699999999999999999999999999999999999996444 568999999888
Q ss_pred cCC
Q 013141 286 ATP 288 (449)
Q Consensus 286 ~~~ 288 (449)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 765
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=111.31 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||+||+..+++.||+.+|. .||.|..|+|-+++ .|||||+|++..||+.|+..|+|..|+|..|+|+.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 467999999999999999999996 99999999998753 689999999999999999999999999999999999
Q ss_pred CCCCC
Q 013141 287 TPKKA 291 (449)
Q Consensus 287 ~~~~~ 291 (449)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 87654
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3e-13 Score=119.93 Aligned_cols=74 Identities=27% Similarity=0.376 Sum_probs=69.3
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
.++|||+||++.+++++|+++|+.||.|.+|+|+++ +++|||+|.+.++|..|+. |+|..|.|+.|+|+++.+-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 578999999999999999999999999999999875 5899999999999999995 9999999999999998753
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5e-13 Score=98.86 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
.+.+..+.|||.|||+++|.|++.++|.+||.|..|+|-. .+|.|||.|+|..+|++|+++|+|..+.++.|.|-|.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3455678999999999999999999999999999999965 3799999999999999999999999999999999886
Q ss_pred CC
Q 013141 399 RN 400 (449)
Q Consensus 399 ~~ 400 (449)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 64
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=7.1e-13 Score=96.37 Aligned_cols=65 Identities=34% Similarity=0.665 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 013141 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 394 (449)
Q Consensus 330 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 394 (449)
|+|+|||+.+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999876 59999999999999999999999999999985
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=4.7e-13 Score=103.01 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..+++|||+||+..++||.|.++|+ +.|+|..|.+=.|+.+..+=|||||+|-+.++|+.|++-+++..++.+.|+++|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 4578999999999999999999997 999999999999999889999999999999999999999999999999999998
Q ss_pred cCC
Q 013141 286 ATP 288 (449)
Q Consensus 286 ~~~ 288 (449)
.--
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 744
No 82
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=1.2e-12 Score=95.14 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 211 l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
|||+|||+++++++|+++|+ .+|.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999995 999999999999977 89999999999999999999999999999999875
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.6e-12 Score=114.60 Aligned_cols=89 Identities=26% Similarity=0.494 Sum_probs=82.4
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+-+||||+-|+.+++|.+|++.| +.||+|+.|.|++|..||+++|||||+|.++.+...|.+..+|..|+++.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 344677899999999999999999999 5999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|++.......
T Consensus 175 VDvERgRTvk 184 (335)
T KOG0113|consen 175 VDVERGRTVK 184 (335)
T ss_pred EEeccccccc
Confidence 9988766543
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.3e-11 Score=115.80 Aligned_cols=145 Identities=28% Similarity=0.521 Sum_probs=114.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 287 (449)
..+|||+|||.++++++|.++|. .||.|..+.+..+..++.++|+|||+|.+.++|..|++.+++..|.++.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999995 99999999999998899999999999999999999999999999999999999976
Q ss_pred C-CCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC
Q 013141 288 P-KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG 362 (449)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~ 362 (449)
. ...+...... . .....................+++.+++..++..++...|..+|.+..+.+...
T Consensus 194 ~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNN-L--------DASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccc-c--------chhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 4 1111000000 0 000000001222344566788999999999999999999999999977777653
No 85
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.40 E-value=4.2e-12 Score=123.54 Aligned_cols=179 Identities=13% Similarity=0.052 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC
Q 013141 104 NGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (449)
Q Consensus 104 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (449)
.+.+...-..+.+.+-+.+++++.++.|+++||... .|.++.|..+...+...|-++|+|....++.+|+.. +...+
T Consensus 300 sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~- 376 (944)
T KOG4307|consen 300 SGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD- 376 (944)
T ss_pred CCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh-
Confidence 333444455677889999999999999999999764 466677777766555589999999999999999964 33322
Q ss_pred CCCCcccccccccC---------------------------------CC-CCccccCCCceEEEcCCCCCCCHHHHHHHH
Q 013141 184 NTDQPFRLNWATFS---------------------------------GS-DRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (449)
Q Consensus 184 ~~~~~~~~~~~~~~---------------------------------~~-~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f 229 (449)
..+.+.+...... .. ..+..-.....|||..||..+++..+.++|
T Consensus 377 -~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f 455 (944)
T KOG4307|consen 377 -VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKF 455 (944)
T ss_pred -hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhh
Confidence 1223332211100 00 000112335689999999999999999999
Q ss_pred hhhCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 230 SSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 230 ~~~~g~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
. .--.|++ |.|.+. .+++.++.|||+|..++++..|...-+...++.+-|+|+....
T Consensus 456 ~-~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 456 M-GAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred h-hhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 6 5556666 555554 4578889999999998888888766666667777777765543
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=2e-12 Score=95.66 Aligned_cols=84 Identities=18% Similarity=0.329 Sum_probs=75.7
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.+..++.|||.|||+++|.|++.++|+ +||.|..|++=.++ ..+|.|||.|++..+|++|++.|+|..++++.+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345678999999999999999999997 99999999997554 45899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
-+..+.+.
T Consensus 90 lyyq~~~~ 97 (124)
T KOG0114|consen 90 LYYQPEDA 97 (124)
T ss_pred EecCHHHH
Confidence 99887654
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.5e-12 Score=125.72 Aligned_cols=177 Identities=16% Similarity=0.320 Sum_probs=131.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
.....+++|++||..+++..++++...||++....++.+..+|-++||||.+|.++.....|++.|||..+......+..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999988654444433
Q ss_pred cccccCCCCC-----------------ccccCCCceEEEcCCC--CCC-CH-------HHHHHHHhhhCCCeeEEEEeec
Q 013141 192 NWATFSGSDR-----------------RTEACSDLSIFVGDLA--PDV-TD-------SILQETFSSKYPSVKGAKVIID 244 (449)
Q Consensus 192 ~~~~~~~~~~-----------------~~~~~~~~~l~v~~lp--~~~-t~-------~~l~~~f~~~~g~v~~i~~~~~ 244 (449)
.......... .....+...|.+.|+= .++ ++ |+++..++ +||.|..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEecCCC
Confidence 2222111000 0111222333333321 011 11 34445564 8999999999877
Q ss_pred CC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 245 SN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 245 ~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
.. .....|..||+|.+.+++++|+++|+|++|.++.|...|.+..
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 22 2234577899999999999999999999999999999887654
No 88
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=117.89 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=123.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc---c-CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSH---T-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~---~-G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
..-.|.+|+||+++++.|+.+||.+ . |.++.|-+++.. +|+..|-|||.|..+++|..||.+. ...|.. +-|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~kh-rq~iGq--RYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKH-RQNIGQ--RYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHH-HHHHhH--HHH
Confidence 3457899999999999999999963 2 245566666654 6999999999999999999999652 222211 111
Q ss_pred cccccc----------------------cC-C---CCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCC-eeE--EE
Q 013141 190 RLNWAT----------------------FS-G---SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKG--AK 240 (449)
Q Consensus 190 ~~~~~~----------------------~~-~---~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~-v~~--i~ 240 (449)
.+-.+. +. . ...-....+...|.+++||++.+.|+|.++|. .|.. |.. |.
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gVH 314 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGVH 314 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhcccceeE
Confidence 111110 00 0 00001223366899999999999999999996 5543 444 67
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 241 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
++.+ ..|++.|-|||+|.+.++|.+|...++++....|.|+|-.+...
T Consensus 315 mv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 315 MVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 7777 45899999999999999999999999988888999999776554
No 89
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.1e-12 Score=89.15 Aligned_cols=55 Identities=36% Similarity=0.645 Sum_probs=52.0
Q ss_pred HHhhccccCceEEEEEeCCC-cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 344 LREPFSQFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 344 L~~~f~~~G~v~~v~i~~~~-g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
|+++|++||+|.++.+.+++ ++|||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999887 99999999999999999999999999999999986
No 90
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.3e-12 Score=118.42 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=116.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCC--Cccc---EEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEG---YGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g--~~~g---~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
...-+++|||++||++++|+.|...|..||.+.-=.-.+....+ -.+| |+|+.|+++.++..-|..+.... .
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~---~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE---G 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc---c
Confidence 34567889999999999999999999999975332221211111 2456 99999999999998887654411 1
Q ss_pred CCcccccccccCC----------------CCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCC
Q 013141 186 DQPFRLNWATFSG----------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR 249 (449)
Q Consensus 186 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~ 249 (449)
..-+++.....+. ........+.+||||++||.-++.++|..+|...||.|..+-|-.|++-+.
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 1111111111110 112234577899999999999999999999977999999999999988899
Q ss_pred cceEEEEEeCCHHHHHHHHH
Q 013141 250 TKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 250 ~~g~afV~f~~~~~A~~A~~ 269 (449)
++|.+=|+|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 99999999999999999985
No 91
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.37 E-value=3e-12 Score=113.65 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 287 (449)
.++|||+||++++|+++|+++|+ .||.|.+|.|+++.. ++|||||+|.+.++|+.|+ .|+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46999999999999999999996 999999999998853 4789999999999999999 599999999999999987
Q ss_pred CCC
Q 013141 288 PKK 290 (449)
Q Consensus 288 ~~~ 290 (449)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 553
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=7e-13 Score=127.53 Aligned_cols=84 Identities=31% Similarity=0.577 Sum_probs=80.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
+.|||+|+|+++++++|.++|+ ..|.|.+++++.|+.+|+++||+|++|.+.++|..|++.|||.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999996 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCc
Q 013141 289 KKASG 293 (449)
Q Consensus 289 ~~~~~ 293 (449)
...+.
T Consensus 98 ~~~~~ 102 (435)
T KOG0108|consen 98 RKNAE 102 (435)
T ss_pred cchhH
Confidence 76543
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=3e-13 Score=110.58 Aligned_cols=87 Identities=25% Similarity=0.478 Sum_probs=80.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..+.-|||+|||+++||.||.-+|+ .||+|.+|.+++|+.||+++||||+.|++-.+...|+..|||..|.||.|+|+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3566899999999999999999997 999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCc
Q 013141 286 ATPKKASG 293 (449)
Q Consensus 286 ~~~~~~~~ 293 (449)
........
T Consensus 112 v~~Yk~pk 119 (219)
T KOG0126|consen 112 VSNYKKPK 119 (219)
T ss_pred cccccCCc
Confidence 76655443
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.3e-12 Score=113.63 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
...++-+||||.-|+++++|.+|+..|+.||+|+.|.|++|+.||+++|||||+|+++.+...|.+..++..|++..+.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999997655554
Q ss_pred cccc
Q 013141 190 RLNW 193 (449)
Q Consensus 190 ~~~~ 193 (449)
-++.
T Consensus 176 DvER 179 (335)
T KOG0113|consen 176 DVER 179 (335)
T ss_pred Eecc
Confidence 4443
No 95
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=7.2e-14 Score=114.16 Aligned_cols=79 Identities=24% Similarity=0.473 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
-.++.-|||+|||++.||.||.-+|++||+|++|.+++|+.||+++||||+.|++..+...|+..|||..|. ++.|+|
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~--gRtirV 109 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL--GRTIRV 109 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec--ceeEEe
Confidence 457889999999999999999999999999999999999999999999999999999999999999999884 466666
Q ss_pred c
Q 013141 192 N 192 (449)
Q Consensus 192 ~ 192 (449)
+
T Consensus 110 D 110 (219)
T KOG0126|consen 110 D 110 (219)
T ss_pred e
Confidence 4
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=3.4e-12 Score=119.57 Aligned_cols=77 Identities=19% Similarity=0.376 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC--CCcEEEEEecCH--HHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANR--KDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~--~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
.....+|||+||.+.+++++|+.+|..||.|.+|.|++ .||||||+|.+. .++.+||..|||..+.|+.|+|.-++
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34468999999999999999999999999999999997 479999999987 68999999999999999999999888
Q ss_pred C
Q 013141 400 N 400 (449)
Q Consensus 400 ~ 400 (449)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=2e-12 Score=107.97 Aligned_cols=84 Identities=26% Similarity=0.422 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..-..|.|-||.+-++.++|+.+| ++||.|-+|.|.+|..|..++|||||.|.+..+|+.|+++|+|..++|+.|+|.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 344689999999999999999999 6999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 013141 286 ATPKK 290 (449)
Q Consensus 286 ~~~~~ 290 (449)
+.-..
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 86543
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=7.6e-12 Score=90.98 Aligned_cols=68 Identities=50% Similarity=0.850 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCC----cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK----GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~----g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
+|+|.|||..+++++|+++|+.||.|.++.+..++ ++|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998865 999999999999999999999999999999873
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=8.4e-12 Score=108.86 Aligned_cols=74 Identities=26% Similarity=0.300 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
...+|+|+||++.+|+++|+++|+.||.|.+|+|.++ +++|||+|.++++|..|+ .|+|..|.++.|.|+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4689999999999999999999999999999999985 479999999999999998 5999999999999997664
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=1.5e-11 Score=115.44 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceecCcceEE
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE--NERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~i~v 283 (449)
....+|||+||++++++++|+.+|+ .||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3457999999999999999999996 999999999994 456 89999999987 6899999999999999999999
Q ss_pred eecCCCC
Q 013141 284 DVATPKK 290 (449)
Q Consensus 284 ~~~~~~~ 290 (449)
..+++.-
T Consensus 83 NKAKP~Y 89 (759)
T PLN03213 83 EKAKEHY 89 (759)
T ss_pred eeccHHH
Confidence 9998764
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2e-12 Score=108.82 Aligned_cols=86 Identities=27% Similarity=0.583 Sum_probs=81.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||++|..++++.-|...|- +||+|.+|.+..|..+.+.|||+||+|.-.|||.+||..||+.++.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3567999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 286 ATPKKAS 292 (449)
Q Consensus 286 ~~~~~~~ 292 (449)
+.+.+..
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9987643
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.1e-12 Score=97.06 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=81.3
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
..+.....|||.++....++++|.+.|. .||+|+.|.+..|..||..+|||+|+|.+.++|.+|+..+||..+.+..|.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3345567899999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 013141 283 IDVATPKKA 291 (449)
Q Consensus 283 v~~~~~~~~ 291 (449)
|.|+..+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999876644
No 103
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.27 E-value=3.5e-11 Score=105.05 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
...+|||+||++.+|+++|+++|+ .||+|.+|.|+++. ..+++|||+|.++++++.|+ .|+|..|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 357999999999999999999996 99999999999884 45689999999999999999 79999999999999987
Q ss_pred CCCC
Q 013141 287 TPKK 290 (449)
Q Consensus 287 ~~~~ 290 (449)
....
T Consensus 79 ~~y~ 82 (243)
T PLN03121 79 GQYE 82 (243)
T ss_pred cccc
Confidence 6543
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.26 E-value=4.6e-11 Score=86.77 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
+|+|+|||..+++++|+++|. .||.|..+.+..+. +.++++|||+|.+.++|++|++.+++..+.++.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999995 99999999998876 6788999999999999999999999999999998874
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.24 E-value=2.7e-11 Score=87.74 Aligned_cols=65 Identities=37% Similarity=0.621 Sum_probs=60.5
Q ss_pred EcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCC
Q 013141 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (449)
Q Consensus 120 v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~ 184 (449)
|+|||+.+++++|+++|..||.|..+.+..++.+++++|+|||+|.+.++|.+|++.+++..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 68999999999999999999999999999988788999999999999999999999999877743
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=7.3e-12 Score=105.50 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
...++|||++|..++++..|...|-+||+|.+|.++-+ ++|+||+|.-.++|..||..||+.+|.||+|+|.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999853 799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
++.+-+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986544
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.5e-10 Score=110.98 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=108.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCC
Q 013141 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (449)
Q Consensus 108 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (449)
....+-..++|+|-|||.+|++++|+.+|+.||+|..|+.-+. .+|.+||+|.|..+|++|+++|+...+.++.+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3344567899999999999999999999999999999776554 35899999999999999999999988855433
Q ss_pred cccccccc--------------cCCC--CCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcc
Q 013141 188 PFRLNWAT--------------FSGS--DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251 (449)
Q Consensus 188 ~~~~~~~~--------------~~~~--~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~ 251 (449)
. +-.-+. .... .......+...++. .|++..+..-++.++ ..+|.+.. +.. +.-+
T Consensus 143 k-~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~-~~~~~~~~-~~~-----~~~~ 213 (549)
T KOG4660|consen 143 K-RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHIS-SVDGSSPG-RET-----PLLN 213 (549)
T ss_pred c-CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcch-hccCcccc-ccc-----cchh
Confidence 3 100000 0000 00011111223333 388877775556666 37776655 221 2112
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 252 GYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 252 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
---|++|.+..++..+.... |..+.+....+.++.+
T Consensus 214 hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 214 HQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 24578888888886655433 6666666666666554
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.24 E-value=1.1e-10 Score=113.86 Aligned_cols=186 Identities=11% Similarity=0.011 Sum_probs=130.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
+.+-+.+.+++.++.+++++|- --.|..+.|..+...+...|.++|+|....++.+|+ +-|...+-.|.+.+.....
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~--g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFP--GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcC--cccccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCCc
Confidence 4466678999999999999993 445667777777665556889999999999999998 4566667788888877666
Q ss_pred CCCCchhhcchhhh-hhhcCCC------CCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEE-EEEe
Q 013141 289 KKASGYQQQYSSQA-LVLAGGP------GSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIP 360 (449)
Q Consensus 289 ~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~ 360 (449)
.............. ....... ...................+|||..||..+++.++.++|+..-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 54432221111111 0000000 00111111123345667889999999999999999999988777777 6665
Q ss_pred CC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 361 VG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 361 ~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
+. ++.|||.|..++++.+|..--+...++.+.|+|.-
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 42 58999999999999998876677778889999974
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.5e-11 Score=95.60 Aligned_cols=84 Identities=21% Similarity=0.452 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
..-.|||.++...++|++|.+.|..||+|+.+.+.-|+.||-.+|||+|+|++.+.|.+|+..+|+..| .+..+.|+|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEEE
Confidence 344699999999999999999999999999999999999999999999999999999999999999988 457788888
Q ss_pred cccCCC
Q 013141 194 ATFSGS 199 (449)
Q Consensus 194 ~~~~~~ 199 (449)
.-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 765433
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2.2e-11 Score=117.23 Aligned_cols=80 Identities=25% Similarity=0.554 Sum_probs=76.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
+.|||+|||++++|++|.++|+..|.|.+++++.|+.+|+++||+|++|.+.++|.+|++.||+..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 56888888886
Q ss_pred cC
Q 013141 196 FS 197 (449)
Q Consensus 196 ~~ 197 (449)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 44
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.4e-12 Score=130.16 Aligned_cols=239 Identities=15% Similarity=0.210 Sum_probs=183.2
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~-~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..+...+.++.+..... ..+..|..++.|+.|.+......-..--+.++.+....+++.|... .+..+.+....+-+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCC
Confidence 44567788888777666 6788999999999998877332122222889999999999999954 555554444343333
Q ss_pred ccccCCCCCccc---cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 193 WATFSGSDRRTE---ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 193 ~~~~~~~~~~~~---~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
.+..+....+.. .....++|++||+..+.+++|...|+ .++.+..+.+......++.+|.|+|+|.+.+++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh
Confidence 333322222211 12346799999999999999999996 99999888877566778999999999999999999996
Q ss_pred HhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhcc
Q 013141 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (449)
Q Consensus 270 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 349 (449)
-..++.++ ...|+|.|.|+..|.++|+.+|+
T Consensus 728 f~d~~~~g-------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~ 758 (881)
T KOG0128|consen 728 FRDSCFFG-------------------------------------------------KISVAISGPPFQGTKEELKSLAS 758 (881)
T ss_pred hhhhhhhh-------------------------------------------------hhhhheeCCCCCCchHHHHhhcc
Confidence 44433332 24589999999999999999999
Q ss_pred ccCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 350 QFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 350 ~~G~v~~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
.+|.+.++.++. .+|.++|.|.+..++.+++...+...+.-+.+.|..+.+...
T Consensus 759 ~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 759 KTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 999999988764 368999999999999999999999888888888888776433
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.1e-10 Score=107.91 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=113.5
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCC--Ccce---EEEEEeCCHHHHHHHHHHhCCceec
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKG---YGFVRFGDENERSRAMTEMNGVYCS 277 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~--~~~g---~afV~f~~~~~A~~A~~~l~g~~~~ 277 (449)
....-+++|||++||++++|++|...|. .||.+.--.-.+....+ -++| |+|+.|+++..+..-+.++.- .-.
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~-~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~ 331 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFG-QFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEG 331 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcc-cccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-ccc
Confidence 4445678999999999999999999996 99986543332221111 2466 999999999998887766543 111
Q ss_pred CcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhcc-ccCceEE
Q 013141 278 SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS-QFGEILS 356 (449)
Q Consensus 278 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~v~~ 356 (449)
.-.+.|+..+.+...-.-..+... + ...........++.+||||++||..++.++|-.+|+ -||.|.+
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~la------D-----s~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~y 400 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLA------D-----SDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLY 400 (520)
T ss_pred ceEEEEecCcccccceeEEeeEec------c-----chhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEE
Confidence 222233333332221000000000 0 000011234566789999999999999999999998 7999999
Q ss_pred EEEeCC------CcEEEEEecCHHHHHHHHHH
Q 013141 357 VKIPVG------KGCGFVQFANRKDAEVALQK 382 (449)
Q Consensus 357 v~i~~~------~g~afV~F~~~~~A~~A~~~ 382 (449)
+-|..+ +|.+-|+|.+..+-.+||.+
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 988765 79999999999999999975
No 113
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=7.2e-11 Score=85.42 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 213 v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
|+|||..+++++|+++|. .||.|..+.+..++.++.++++|||+|.+.++|.+|++.+++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 578999999999999995 99999999999988788999999999999999999999999999999998874
No 114
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=7.8e-11 Score=86.07 Aligned_cols=69 Identities=48% Similarity=0.836 Sum_probs=64.9
Q ss_pred EEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
+|+|+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|..|++.+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999874 58999999999999999999999999999999875
No 115
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=4.3e-10 Score=82.06 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
+|+|++||..+++++|+++|. .+|.|..+.+..+..+ .+++++||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999995 8999999999988654 6789999999999999999999999999999998864
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.12 E-value=3.9e-10 Score=81.58 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=54.1
Q ss_pred HHHHHHHHhh----hCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 222 ~~~l~~~f~~----~~g~v~~i~-~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
+++|+++| . .||.|.++. ++.++.+ +.++|++||+|.+.++|.+|++.|||..+.|+.|++.
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 45677777 5 899999996 7777666 8899999999999999999999999999999999863
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.1e-11 Score=101.81 Aligned_cols=146 Identities=20% Similarity=0.366 Sum_probs=119.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..+..++|||.||...|+|+-|.++|-+.|+|..|.|..++ +++.+ ||||+|.++-++.-|++-+|+..+.+. +++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~--e~q 80 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED--EEQ 80 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccc--hhh
Confidence 34678999999999999999999999999999999988876 46777 999999999999999999999888553 333
Q ss_pred ccccccCCCCCccccCCCceEEEcC----CCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 191 LNWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~~----lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
+ +++.++ |...++++.+.+.|+ .-+.++.+++..+.. ++.+.++|+++......-.
T Consensus 81 ~------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 81 R------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred c------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcH
Confidence 2 333344 666788999999996 899999999988855 8889999999988888888
Q ss_pred HHHHhCCceecCcc
Q 013141 267 AMTEMNGVYCSSRP 280 (449)
Q Consensus 267 A~~~l~g~~~~g~~ 280 (449)
++....+....-++
T Consensus 141 ~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 141 ALDLYQGLELFQKK 154 (267)
T ss_pred HhhhhcccCcCCCC
Confidence 87766665443333
No 118
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=7.5e-10 Score=76.32 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.2
Q ss_pred HHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 225 l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
|+++|+ +||+|..+.+..+. +++|||+|.+.++|..|++.||+..+.|++|+|+|+
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678995 99999999998653 579999999999999999999999999999999985
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.05 E-value=1.8e-10 Score=99.56 Aligned_cols=171 Identities=32% Similarity=0.437 Sum_probs=130.9
Q ss_pred ceEEEcCCCCCCCHHH-H--HHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 116 KTIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~-l--~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
-.+++.++-..+..+- | ...|+.+-.++..+++++.. +..++++|+.|.....-.++-..-+++.+. ..++++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~--~~~VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIG--KPPVRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhcccccccccc--Ccceeec
Confidence 3455666655555544 3 66777777777778888764 778899999999888777777655666553 2335554
Q ss_pred ccccCCCCCc-cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 193 WATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
.....++... .-.....+||.+.|..+++.+-|...|. +|-....-++++|+.|++++||+||-|.+..++.+|+++|
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~-Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK-KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHH-hccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 3332222221 3345567899999999999999999995 9999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEeecCCCC
Q 013141 272 NGVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~ 290 (449)
+|+.++.+.|++..+.-+.
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 9999999999887665443
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=6.8e-10 Score=100.29 Aligned_cols=81 Identities=35% Similarity=0.695 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh-cCCeeCCeEEEEEec
Q 013141 320 QSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSWG 398 (449)
Q Consensus 320 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v~~~ 398 (449)
.+.......+|||++|...+++.+|+++|.+||+|.+|.+...+++|||+|.+.++|+.|.+.+ +...|+|.+|.|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 3445566789999999999999999999999999999999999999999999999999988776 666789999999999
Q ss_pred CC
Q 013141 399 RN 400 (449)
Q Consensus 399 ~~ 400 (449)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 121
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-09 Score=104.92 Aligned_cols=78 Identities=29% Similarity=0.397 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
....|||.|||.+++.++|+++|+.||.|+...|... ..|+||+|.+.+++..||++ +-..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3445999999999999999999999999999877642 28999999999999999986 5778899999999888
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
...+.
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 64433
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.02 E-value=5.6e-10 Score=110.55 Aligned_cols=80 Identities=35% Similarity=0.720 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 405 (449)
-+++|||+.|+..+++.||+++|+.||.|.+|.++.+++||||.+....+|.+|+.+|++..+.++.|+|.|+...+-+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998755443
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=7.6e-10 Score=80.04 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=50.7
Q ss_pred HHHHHHHhh----ccCCcEEEE-EEecCCC--CCcccEEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 129 ~~~l~~~f~----~~G~v~~v~-~~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
+++|+++|+ .||.|.+|. ++.++.+ ++++||+||+|.+.++|.+|++.||+..+.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 678999998 999999995 7777766 89999999999999999999999999988553
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.00 E-value=7.4e-10 Score=102.09 Aligned_cols=178 Identities=21% Similarity=0.311 Sum_probs=141.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...+++|++++.+.+.+.++..++...|.+..+.+........++|+++|.|...+.+..||.......+..+....-+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999999888888887778899999999999999999999653333443322222222
Q ss_pred cccc---CCCCCccccCCCceEE-EcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 013141 193 WATF---SGSDRRTEACSDLSIF-VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (449)
Q Consensus 193 ~~~~---~~~~~~~~~~~~~~l~-v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 268 (449)
.... .............+++ |++|+.++++++|++.|. .+|.|..+++..+..++..+|+++|.|.+...+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 2111 1111122333444555 999999999999999995 9999999999999999999999999999999999998
Q ss_pred HHhCCceecCcceEEeecCCCCCC
Q 013141 269 TEMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
.. ....+.++++.+.+..+....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 76 788899999999999887543
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.97 E-value=9.3e-10 Score=109.00 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=82.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
++||||++|+..++|.||..+|+.||.|.+|.++..+ |||||.+....+|.+||.+|+...+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 4789999999999999999999999999999998764 7999999999999999999998777 6688889998
Q ss_pred ccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHH
Q 013141 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (449)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f 229 (449)
--......-...-...+=|.-||++.-.++|+.++
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 75544432222223333444567654444555555
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=5.2e-11 Score=119.13 Aligned_cols=150 Identities=20% Similarity=0.281 Sum_probs=129.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
...++||+||+..+.+++|...|..+|.+..+.+....+.++.+|+|||+|..++++.+|+...+.+.+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4567999999999999999999999999888887766678999999999999999999999765554442
Q ss_pred cccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
...|+|.|.|+..|.++++.++. .+|.+.+++++..+ .|+++|.++|.|.++.++.++....+.
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 34789999999999999999995 99999999877664 489999999999999999999888877
Q ss_pred ceecCcceEEeecCCC
Q 013141 274 VYCSSRPMRIDVATPK 289 (449)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (449)
..+....+.|..+.+.
T Consensus 800 ~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhcCccccccCCc
Confidence 7777777777776653
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.2e-09 Score=110.09 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=137.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
.+...+++||++||...+++.+|+..|..+|.|.+|.|-..+. +.-.-|+||.|.+...+-.|+..+.+..|......+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 4556789999999999999999999999999999999877643 455569999999999999999999888886554444
Q ss_pred cccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
.+... .....+.+++++|.+.+....|...| ..||.|..|.+-. + ..|++|.|.+...+..|+.
T Consensus 446 glG~~---------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 446 GLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccccc---------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeeccc----C--CcceeeecccCccchhhHH
Confidence 43322 35577899999999999999999999 5999999887643 3 3399999999999999999
Q ss_pred HhCCceecC--cceEEeecCCCCCC
Q 013141 270 EMNGVYCSS--RPMRIDVATPKKAS 292 (449)
Q Consensus 270 ~l~g~~~~g--~~i~v~~~~~~~~~ 292 (449)
.|.+..|++ +.++|.++.+....
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 999999855 66888888776544
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.5e-09 Score=98.00 Aligned_cols=84 Identities=25% Similarity=0.472 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCC------cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
...++.++|||--|.+-++++||.-+|+.||.|.++.|++++ .+|||+|++.+++.+|.-.|++..|++++|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 445678999999999999999999999999999999999863 68999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 013141 396 SWGRNPGNKQ 405 (449)
Q Consensus 396 ~~~~~~~~~~ 405 (449)
.|+-......
T Consensus 314 DFSQSVsk~k 323 (479)
T KOG0415|consen 314 DFSQSVSKVK 323 (479)
T ss_pred ehhhhhhhhh
Confidence 9988655433
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.9e-09 Score=97.48 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=80.8
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.+.|||-.|.+-++.++|.-+|+ .||.|.++.+++|..||.+-.||||+|.+.+++++|.-.|++..|+++.|+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 346788999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 013141 284 DVATPKK 290 (449)
Q Consensus 284 ~~~~~~~ 290 (449)
.++....
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9986644
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.8e-09 Score=102.41 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=118.4
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+..+|+|.|||.++++++|+++|+ .||+|+.|+.- ...++..||+|-|..+|++|+++|++++|.++.|.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k- 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK- 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc-
Confidence 356778999999999999999999995 99999997654 34578999999999999999999999999999998
Q ss_pred eecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCC
Q 013141 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK 363 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~ 363 (449)
.+...+...........+..-....... ....-. ...+++ .|++..+..-++..+.-+|.+..-....-.
T Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~p~a~s-----~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 213 (549)
T KOG4660|consen 144 ---RPGGARRAMGLQSGTSFLNHFGSPLANS-----PPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSPGRETPLLN 213 (549)
T ss_pred ---CCCcccccchhcccchhhhhccchhhcC-----CCCCCc-CCccee-eeccchhhhhhhcchhccCccccccccchh
Confidence 2222111111100000000000000000 000111 222332 288888776667777777877662222223
Q ss_pred cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 364 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 364 g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
..-|+.|.+..++..+...+ |..+.+....++++.+
T Consensus 214 hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 214 HQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 47789999988887776644 7778888888888876
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.89 E-value=3.4e-09 Score=97.74 Aligned_cols=176 Identities=24% Similarity=0.320 Sum_probs=135.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
...++|++++...+.+.++..++ ...|.+....+........+++++.+.|...+.+..++.......+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999888888888 48887777777766677888999999999999999999644444666666666555
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---- 362 (449)
.......... .............+|.+++..+++++|+.+|..+|.|..++++..
T Consensus 166 ~~~~~~~~n~---------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 166 TRRGLRPKNK---------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG 224 (285)
T ss_pred ccccccccch---------------------hcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc
Confidence 5444210000 001112233344559999999999999999999999999999863
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 013141 363 --KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 363 --~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 405 (449)
++++||.|.+...+..++.. ....+.++.+++.+.+......
T Consensus 225 ~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred chhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcccc
Confidence 68999999999999999987 8889999999999999876553
No 132
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=3.2e-09 Score=89.39 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
.....++|..+|.-+.+.+|..+|.++ |.|..+++.+++.||.++|||||+|++++.|+-|-+.||+.+|.+.-..+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 456679999999999999999999999 78888888899999999999999999999999999999999985543333
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2.9e-09 Score=107.32 Aligned_cols=162 Identities=20% Similarity=0.379 Sum_probs=138.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
...+.+||++||+..+++.+|+..|. .+|.|.+|.|-..+. +.-.-|+||.|.+.+.+-.|+..+.+..|....+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~-e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFD-ESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhh-hhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 35577999999999999999999995 999999998876532 3444589999999999999998999888866666665
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCc
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG 364 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g 364 (449)
+...+ ....+.+++++|...+....|...|..||.|..|.+.....
T Consensus 447 lG~~k----------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 447 LGQPK----------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred ccccc----------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 55432 22367899999999999999999999999999999988889
Q ss_pred EEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCC
Q 013141 365 CGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGRNPG 402 (449)
Q Consensus 365 ~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~ 402 (449)
+++|.|++...|..|+..|.|..|++ +.|+|.|+....
T Consensus 493 yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 493 YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred ceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 99999999999999999999999984 789999998653
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=85.70 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=78.9
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
........+++..+|.-+.+.++..+|++.+|.|..+++.+++.||.++|||||+|++++.|+-|.+.||+..+.++-|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 34455678999999999999999999974458899999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 013141 283 IDVATPK 289 (449)
Q Consensus 283 v~~~~~~ 289 (449)
+.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998876
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.75 E-value=2.4e-08 Score=95.65 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
...+.|||.+|...+...||+.+|++||+|+-.+|+.+ +.++||++.+.++|.++|+.||.++|+|+.|.|+-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999998864 689999999999999999999999999999999998
Q ss_pred CCC
Q 013141 399 RNP 401 (449)
Q Consensus 399 ~~~ 401 (449)
|+.
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 863
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=2.2e-08 Score=90.71 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=70.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 107 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
.....+...++|||++|-..++|.+|+++|.+||+|.++.++..+ ++|||+|.+.++|+.|.+++-. .+...+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G 292 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVING 292 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecc
Confidence 334456678899999999999999999999999999999998865 5999999999999999987655 344466
Q ss_pred Cccccccccc
Q 013141 187 QPFRLNWATF 196 (449)
Q Consensus 187 ~~~~~~~~~~ 196 (449)
..+++.|...
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 7777889876
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.2e-08 Score=86.45 Aligned_cols=143 Identities=26% Similarity=0.329 Sum_probs=113.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||.|+...++++-|.|+|- ..|+|..|.|..+.. ++.+ ||||.|.++-...-|++.+||..+.++.+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34567999999999999999999995 999999999988765 5556 99999999999999999999999988888776
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--- 361 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--- 361 (449)
+..-.... -|...++++.+...|+.-|.+..+++.+
T Consensus 83 ~r~G~sha-----------------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 83 LRCGNSHA-----------------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred cccCCCcc-----------------------------------------hhhhhcchhhheeeecccCCCCCcccccccc
Confidence 54332111 1555678888888999989998888875
Q ss_pred --CCcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 013141 362 --GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 391 (449)
Q Consensus 362 --~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 391 (449)
++.+.||++--..+.-.++....+...--+
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 357888888777777777776666654433
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=1.7e-07 Score=71.04 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc--CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCC--CCcccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT--DQPFRL 191 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~--~~~~~~ 191 (449)
+||+|+|||...|.++|.+++... |...-+.+..|..++.+.|||||.|.+.++|.+..+.+++..+... .+.+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998763 5666788899988999999999999999999999999999888532 334444
Q ss_pred cccc
Q 013141 192 NWAT 195 (449)
Q Consensus 192 ~~~~ 195 (449)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 4443
No 139
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.63 E-value=5.5e-09 Score=96.58 Aligned_cols=153 Identities=20% Similarity=0.357 Sum_probs=126.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcceEEeecC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVAT 287 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~v~~~~ 287 (449)
+++|++||.+.++.++|..+|.+.--....-.+++ .||+||...+...|.+|++.++++. +.|+.+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999964322222222332 4799999999999999999999855 789999999888
Q ss_pred CCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-CC--c
Q 013141 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-GK--G 364 (449)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-~~--g 364 (449)
++..+ ++.+-|.|+|....++.|..++..||.|+.+.... +. -
T Consensus 75 ~kkqr----------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta 120 (584)
T KOG2193|consen 75 PKKQR----------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA 120 (584)
T ss_pred hHHHH----------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH
Confidence 87654 45588999999999999999999999999987653 22 3
Q ss_pred EEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 365 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 365 ~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
..-|+|.+.+.++.|+..|+|..|....++|.|--+..
T Consensus 121 vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 121 VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 44578999999999999999999999999999976543
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=1.3e-07 Score=90.70 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...+.|||.+|...+...+|+.+|+ +||.|.-.+++.+..+.-.++|+||++.+.++|.+||+.|+..++.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4467899999999999999999997 999999999999988888899999999999999999999999999999999999
Q ss_pred cCCC
Q 013141 286 ATPK 289 (449)
Q Consensus 286 ~~~~ 289 (449)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8764
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.57 E-value=4.8e-08 Score=84.78 Aligned_cols=146 Identities=25% Similarity=0.424 Sum_probs=108.3
Q ss_pred HHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhh
Q 013141 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVL 305 (449)
Q Consensus 226 ~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~ 305 (449)
...|+ .+-.+....++++.. +.-++++|+.|.....-.++-..-+++.+..+.|++...+.-...
T Consensus 117 ~~~f~-~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP------------- 181 (290)
T KOG0226|consen 117 PVVFS-EYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP------------- 181 (290)
T ss_pred hhhhc-cchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc-------------
Confidence 44553 566666666666643 566789999998877776666556667776666555443332221
Q ss_pred cCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC------CCcEEEEEecCHHHHHHH
Q 013141 306 AGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRKDAEVA 379 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~------~~g~afV~F~~~~~A~~A 379 (449)
...+-.....+||.+.|..+++++.|-..|.+|-.....++++ ++|++||.|.+..++..|
T Consensus 182 -------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 182 -------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred -------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 1223345678899999999999999999999997766666665 469999999999999999
Q ss_pred HHHhcCCeeCCeEEEEEecC
Q 013141 380 LQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 380 ~~~l~g~~~~g~~l~v~~~~ 399 (449)
+..|+|+.++.+.|+++-+.
T Consensus 249 mrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HHhhcccccccchhHhhhhh
Confidence 99999999999998876443
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=1.9e-07 Score=72.70 Aligned_cols=69 Identities=35% Similarity=0.541 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCC-----eeCCeEEEEE
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-----AIGKQTVRLS 396 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~-----~~~g~~l~v~ 396 (449)
++|+|.+++..++.++|++.|+.||.|.+|.+.++...|||+|.+.++|++|++.+... .+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 67999999999999999999999999999999999999999999999999999988544 5566666655
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.50 E-value=4.2e-07 Score=80.81 Aligned_cols=83 Identities=29% Similarity=0.478 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
...+|+|.||+..++.+||+++|. .|+.+..+.+..+ .+|.+.|.|-|.|...++|.+|++.+++..++|+.+++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHH-HhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 346899999999999999999995 9999999988888 45999999999999999999999999999999999999887
Q ss_pred CCCCC
Q 013141 287 TPKKA 291 (449)
Q Consensus 287 ~~~~~ 291 (449)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 66543
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.47 E-value=4.5e-07 Score=80.64 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
....+.+|+|.|||+.|+++||+++|..||.+..+.+..++ .|++.|.|-|.|...++|++|++.+++..+++.. ++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~--mk 155 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP--MK 155 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCce--ee
Confidence 34456789999999999999999999999998888888886 6999999999999999999999999997776544 55
Q ss_pred ccc
Q 013141 191 LNW 193 (449)
Q Consensus 191 ~~~ 193 (449)
+..
T Consensus 156 ~~~ 158 (243)
T KOG0533|consen 156 IEI 158 (243)
T ss_pred eEE
Confidence 443
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.46 E-value=6.1e-07 Score=64.49 Aligned_cols=69 Identities=20% Similarity=0.424 Sum_probs=48.3
Q ss_pred cEEEEcCCCCCCCHhHHH----hhccccC-ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 328 ATIFVGALDSDVSDEDLR----EPFSQFG-EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~----~~f~~~G-~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
..|+|.|||...+...|+ .++..+| .|.+| ..+.|+|.|.+.+.|.+|.++|+|..+.|+.|.|+|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 468999999998876655 5555775 67766 268999999999999999999999999999999999854
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=1.3e-06 Score=78.06 Aligned_cols=79 Identities=25% Similarity=0.433 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
....+...+||+|+.+.+|.++|..+|+.||.|..|.++.+ ++++||+|.+.+.+..|+. |++..|.++.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 34556789999999999999999999999999998888763 6899999999999999998 9999999999999
Q ss_pred EecCCC
Q 013141 396 SWGRNP 401 (449)
Q Consensus 396 ~~~~~~ 401 (449)
++.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998876
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.41 E-value=2.8e-06 Score=64.47 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhh-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec----CcceEE
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~-~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v 283 (449)
+||+|+|||...|.++|.+++.+. .|...-+.++.|..++...|||||.|.+.+.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888543 355667888899888999999999999999999999999998873 556677
Q ss_pred eecCCC
Q 013141 284 DVATPK 289 (449)
Q Consensus 284 ~~~~~~ 289 (449)
.+|+..
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 776543
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.38 E-value=8.9e-07 Score=87.46 Aligned_cols=81 Identities=40% Similarity=0.751 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 391 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~---------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 391 (449)
.+..+..+.|||+||+++++++.|...|..||.|.+|+|+- .+.|+||-|-+..+|.+|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 34567788999999999999999999999999999999973 368999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 013141 392 TVRLSWGRNP 401 (449)
Q Consensus 392 ~l~v~~~~~~ 401 (449)
.+++.|++..
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999999853
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.33 E-value=9.4e-07 Score=85.10 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
.....+|||+|||.++++.+|+++|..||+|+...|......++...|+||+|.+.+++..||.+ + .+....+.+.|
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-s--p~~ig~~kl~V 361 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-S--PLEIGGRKLNV 361 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-C--ccccCCeeEEE
Confidence 34455699999999999999999999999999988877654455568999999999999999965 3 33333444444
Q ss_pred c
Q 013141 192 N 192 (449)
Q Consensus 192 ~ 192 (449)
+
T Consensus 362 e 362 (419)
T KOG0116|consen 362 E 362 (419)
T ss_pred E
Confidence 3
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=7.6e-07 Score=79.47 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..-+.+.|||+|+-+.+|.++|...|+.||.|..+.|.+|+..+.++||+||+|.+.+.++.++. |++..+.+ ..+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~--~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG--PAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc--ccce
Confidence 34577899999999999999999999999999999999999999999999999999999999997 99999854 4555
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
+.+..
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 54443
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.30 E-value=1.6e-06 Score=85.73 Aligned_cols=85 Identities=27% Similarity=0.551 Sum_probs=72.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCC---CCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
..+..++.|||+||++.++++.|..-|..||+|.+|+|+..+. ..+.+-|+||-|.+..+|++|++.|++.++ ..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~ 246 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--ME 246 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--ee
Confidence 3456788899999999999999999999999999999987542 334567999999999999999999999988 55
Q ss_pred Cccccccccc
Q 013141 187 QPFRLNWATF 196 (449)
Q Consensus 187 ~~~~~~~~~~ 196 (449)
..+++.|.+.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 7788888853
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.12 E-value=2.6e-06 Score=78.52 Aligned_cols=184 Identities=16% Similarity=0.137 Sum_probs=122.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..|.|.||.+++|.+.+..+|. ..|.|.++.|+.+.. -......|||.|.+...+..|- .|.+..|-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4789999999999999999996 999999999886432 2234568999999999988885 7888888888877765
Q ss_pred cCCCCCCchhhc---chhhh---hhhcCCC-----CC------CCCCcCCC-------CCCCCCCCcEEEEcCCCCCCCH
Q 013141 286 ATPKKASGYQQQ---YSSQA---LVLAGGP-----GS------NGARVQGS-------QSDGESNNATIFVGALDSDVSD 341 (449)
Q Consensus 286 ~~~~~~~~~~~~---~~~~~---~~~~~~~-----~~------~~~~~~~~-------~~~~~~~~~~l~V~nlp~~~t~ 341 (449)
............ ..... .....+. .. .......+ .....+...+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 544322111000 00000 0000000 00 00000000 0011122367999999999999
Q ss_pred hHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 342 EDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 342 ~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
.++.+.|..+|.|.+.++.. ....|.|+|........|+. ++|..+.-...++
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ 220 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRR 220 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhh
Confidence 99999999999999988764 35678899998888888875 6788776333333
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.12 E-value=8.7e-06 Score=74.83 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEE--------EEEeC------CCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
.....+|||.+|+..+++++|.++|.++|.|.. |.|.+ .|+.|.|+|+|...|+.|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 456678999999999999999999999988754 23322 3799999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCC
Q 013141 390 KQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 390 g~~l~v~~~~~~~~~~ 405 (449)
+..|+|.++....+..
T Consensus 143 gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVE 158 (351)
T ss_pred CCCchhhhhhhccCcc
Confidence 9999999988765433
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=6.1e-05 Score=54.36 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=46.5
Q ss_pred ceEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 209 LSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~----~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..|+|.|||.+.+...|+ .++..-.|.|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999999877665 44433345555552 3579999999999999999999999999999999
Q ss_pred ecCCCC
Q 013141 285 VATPKK 290 (449)
Q Consensus 285 ~~~~~~ 290 (449)
+.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985543
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=2.7e-05 Score=70.51 Aligned_cols=73 Identities=19% Similarity=0.503 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCCCHhH----HH--hhccccCceEEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 013141 327 NATIFVGALDSDVSDED----LR--EPFSQFGEILSVKIPVGK---------GCGFVQFANRKDAEVALQKLQGTAIGKQ 391 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~----L~--~~f~~~G~v~~v~i~~~~---------g~afV~F~~~~~A~~A~~~l~g~~~~g~ 391 (449)
..-+||-+|++.+..|+ |+ ++|.+||.|..|.|-+.. --+||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999987766 33 789999999999987521 2359999999999999999999999999
Q ss_pred EEEEEecC
Q 013141 392 TVRLSWGR 399 (449)
Q Consensus 392 ~l~v~~~~ 399 (449)
.|+.+|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99999987
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.81 E-value=2.6e-06 Score=79.24 Aligned_cols=156 Identities=15% Similarity=0.290 Sum_probs=115.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
..||++||.+.++..||..+|...-.-.+-.++.. .||+||...+..-|.+|++.+++..- ..+..+.+...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccchh
Confidence 36899999999999999999987532222222222 27999999999999999999888642 133334433322
Q ss_pred cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 013141 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII-DSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (449)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 274 (449)
.. ...++++-|.|+|+...++-|..++. .||.++.+..+. +.. .-..-|+|.+.+.+..||..|+|.
T Consensus 75 ~k-------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 75 PK-------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hH-------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcch
Confidence 11 22345688999999999999999996 999999886542 222 223357899999999999999999
Q ss_pred eecCcceEEeecCCCC
Q 013141 275 YCSSRPMRIDVATPKK 290 (449)
Q Consensus 275 ~~~g~~i~v~~~~~~~ 290 (449)
.+....+++.|..+..
T Consensus 143 Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQ 158 (584)
T ss_pred HhhhhhhhcccCchhh
Confidence 9999999998876543
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=4.1e-05 Score=51.42 Aligned_cols=52 Identities=35% Similarity=0.613 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHH
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVAL 380 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~ 380 (449)
+.|.|.+.+.+.. ++|..+|..||+|.++.+.......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4678888887766 556668889999999999978899999999999999985
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=5.2e-05 Score=59.08 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCC
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~ 180 (449)
+.|.|.++...++.++|++.|+.||.|.-|.+.+... .|||.|.+.++|.+|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 4689999999999999999999999999998877643 7999999999999999887654
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.72 E-value=9.2e-05 Score=56.68 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEE-------------EeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE-
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVK-------------IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT- 392 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~-------------i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~- 392 (449)
.+-|.|-+.|.. ..+.|.++|++||+|.+.. +........|+|+++.+|.+||. -||+.|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888899888 5588889999999998885 55567899999999999999997 5999999864
Q ss_pred EEEEecC
Q 013141 393 VRLSWGR 399 (449)
Q Consensus 393 l~v~~~~ 399 (449)
+-|.|.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4477764
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.67 E-value=7.7e-05 Score=70.00 Aligned_cols=64 Identities=30% Similarity=0.362 Sum_probs=56.5
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-------------------CcEEEEEecCHHHHHHHHHHh
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------------------KGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-------------------~g~afV~F~~~~~A~~A~~~l 383 (449)
.+..+++|.+.|||.+-..+.|.++|..+|.|+.|+|+.. +-+|+|+|++.+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999999999999999999999999752 468999999999999999988
Q ss_pred cCC
Q 013141 384 QGT 386 (449)
Q Consensus 384 ~g~ 386 (449)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=9.7e-05 Score=49.62 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHH
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al 174 (449)
+.|-|.+.+.+..+ +|..+|..||+|+++.+-... -+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 57889999987665 455688899999998886433 38999999999999986
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.64 E-value=5.7e-05 Score=69.62 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=76.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
.....+|||-+|+..+++++|.++|. ..+.|.. |.|.+|++|+++|+-|.|.|.+...|+.||.-+++..|
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 34556899999999999999999995 8888754 77888999999999999999999999999999999999
Q ss_pred cCcceEEeecCCCC
Q 013141 277 SSRPMRIDVATPKK 290 (449)
Q Consensus 277 ~g~~i~v~~~~~~~ 290 (449)
.+.+|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998887654
No 163
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.62 E-value=1.6e-05 Score=73.44 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=105.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCC---CCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
...|.|.||.+.+|.+.++.+|.-.|.|.++.++.... -......|||.|.|...+..|- .|..+.+-.+.+ |.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdral-iv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRAL-IVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeE-EEE
Confidence 34899999999999999999999999999999988432 2234568999999999999887 344433311111 111
Q ss_pred cccccC-----------------------CC---CCc------------------------cccCCCceEEEcCCCCCCC
Q 013141 192 NWATFS-----------------------GS---DRR------------------------TEACSDLSIFVGDLAPDVT 221 (449)
Q Consensus 192 ~~~~~~-----------------------~~---~~~------------------------~~~~~~~~l~v~~lp~~~t 221 (449)
-+.... .. ... ......++++|.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 111000 00 000 0112235789999999999
Q ss_pred HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 013141 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (449)
Q Consensus 222 ~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 277 (449)
..++.+.| +.+|+|....+-. +...-+|.++|........|+ .++|..+.
T Consensus 165 l~e~~e~f-~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESF-ERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred chhhhhhh-hhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 99999999 5999988776543 223446779999888888887 46666654
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.53 E-value=9.1e-05 Score=69.54 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEec---CCCCC----------cccEEEEEEccHHHHHHHHHHhcC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQTGQ----------SEGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~g~----------~~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
-.+++|.+-|||.+-.-+.|.++|..+|.|..|+|+.. ..+.+ .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 38999999999999999999999999999999999886 33332 245799999999999999988766
Q ss_pred CCCCCCCCcccc
Q 013141 180 SLMPNTDQPFRL 191 (449)
Q Consensus 180 ~~~~~~~~~~~~ 191 (449)
...+..+..+++
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 555544444444
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.49 E-value=0.00019 Score=63.96 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=52.9
Q ss_pred CHhHHHhhccccCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 340 SDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 340 t~~~L~~~f~~~G~v~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
-++++++.|++||.|..|.|... ---.||+|+..++|.+|+-.|||+.|+|+.++..|..-
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 35789999999999999888652 24579999999999999999999999999999888653
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.48 E-value=0.0001 Score=67.22 Aligned_cols=70 Identities=23% Similarity=0.453 Sum_probs=63.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
..+||+||-|.+|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++.++.|-.+.|.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 4699999999999999999998877 578899999999999999999999999999999988887777554
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.45 E-value=6.2e-05 Score=65.97 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------------------CcEEEEEecCHHHHHHHHHHhcCCe
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------------------KGCGFVQFANRKDAEVALQKLQGTA 387 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------------------~g~afV~F~~~~~A~~A~~~l~g~~ 387 (449)
..-+||+++||+.+....|+++|+.||.|-+|.+-+. -..++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988652 1357899999999999999999999
Q ss_pred eCCeE
Q 013141 388 IGKQT 392 (449)
Q Consensus 388 ~~g~~ 392 (449)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.44 E-value=0.0005 Score=62.56 Aligned_cols=81 Identities=19% Similarity=0.370 Sum_probs=64.5
Q ss_pred CceEEEcCCCCCCCHHHH------HHHHhhhCCCeeEEEEeecCCCCCc-ceE--EEEEeCCHHHHHHHHHHhCCceecC
Q 013141 208 DLSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNTGRT-KGY--GFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l------~~~f~~~~g~v~~i~~~~~~~~~~~-~g~--afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
.+-+||-+|++.+..|++ .++|+ .||.|..|.+.+...+..+ .+. .||+|.+.|+|.++|.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456899999998877663 37896 9999999988766422221 222 3999999999999999999999999
Q ss_pred cceEEeecCCC
Q 013141 279 RPMRIDVATPK 289 (449)
Q Consensus 279 ~~i~v~~~~~~ 289 (449)
|.|+..+.+.+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887754
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.30 E-value=9.4e-05 Score=65.07 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=51.2
Q ss_pred hHHHhhcc-ccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 342 EDLREPFS-QFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 342 ~~L~~~f~-~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
++|...|+ +||+|+.+.|..+ .|.+||.|...++|++|++.||+..|.|+.|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 8999999988764 5899999999999999999999999999999998766
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.00058 Score=60.05 Aligned_cols=90 Identities=18% Similarity=0.400 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCC
Q 013141 168 AAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (449)
Q Consensus 168 ~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~ 247 (449)
.-|+.|..+|++... ..+.+++.++. ...|+|.||...++.|.+.+.|+ .||+|+.-.++.| ..
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~------------~a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAM------------HAELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeec------------cceEEEEecchhhhhHHHHHhhh-hcCccchheeeec-cc
Confidence 346667777899888 55778877775 25899999999999999999996 9999999888777 44
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 248 GRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 248 ~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
++..+-++|+|...-.|.+|+..+.-
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhcc
Confidence 78888999999999999999988753
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.0002 Score=62.80 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=62.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhCCc
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--------GRTK----GYGFVRFGDENERSRAMTEMNGV 274 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~--------~~~~----g~afV~f~~~~~A~~A~~~l~g~ 274 (449)
....||+++||+.+...-|+++|+ .||.|-+|.+-....+ +..+ .-++|+|.+...|.++...||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999996 9999999999876554 2221 23799999999999999999999
Q ss_pred eecCcce
Q 013141 275 YCSSRPM 281 (449)
Q Consensus 275 ~~~g~~i 281 (449)
.|+|+.-
T Consensus 152 ~Iggkk~ 158 (278)
T KOG3152|consen 152 PIGGKKK 158 (278)
T ss_pred ccCCCCC
Confidence 9988753
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.09 E-value=0.00099 Score=58.65 Aligned_cols=87 Identities=25% Similarity=0.386 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHh
Q 013141 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDE 342 (449)
Q Consensus 263 ~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~ 342 (449)
-|+.|..+|++....++.++|.|+.. ..|+|.||...++.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~snd 46 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASND 46 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhhH
Confidence 46677778999999999999999866 248999999999999
Q ss_pred HHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCee
Q 013141 343 DLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAI 388 (449)
Q Consensus 343 ~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~ 388 (449)
.|...|+.||.|....+..+ .+..+|+|...-.|.+|+......-|
T Consensus 47 ll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 47 LLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred HHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 99999999999988665542 57899999999999999988754433
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.09 E-value=0.0027 Score=51.63 Aligned_cols=56 Identities=25% Similarity=0.474 Sum_probs=46.1
Q ss_pred hHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 342 EDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 342 ~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
.+|.+.|..||+|.=|++.. +.-+|+|.+-+.|.+|+. |+|..++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 36778889999998888874 589999999999999985 899999999999998765
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0014 Score=63.95 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=59.5
Q ss_pred CCCceEEEcCCCC--CCC----HHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 113 DETKTIWIGDLFH--WMD----ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 113 ~~~~~l~v~nLp~--~~t----~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
.....|+|.|+|- ... ..-|.++|+++|.++.+.+..+.. |.++||.|++|.+..+|+.|++.|||+.++.+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3456799999994 222 334678999999999999998865 55999999999999999999999999988654
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.01 E-value=0.00055 Score=66.98 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhcc-ccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCee---CCeEEEEEe
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFS-QFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI---GKQTVRLSW 397 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~l~v~~ 397 (449)
.....+++|+|.||-.-+|.-.|+.++. ..|.|....|.+=+..|||.|.+.++|...+.+|||..+ +.+.|.+.|
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 3556789999999999999999999997 567788876655578999999999999999999999987 478999999
Q ss_pred cCCC
Q 013141 398 GRNP 401 (449)
Q Consensus 398 ~~~~ 401 (449)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8853
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.94 E-value=0.0031 Score=57.80 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=58.6
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccC--ceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFG--EILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
....++||+||-+.+|++||.+.+..-| .+.++++.. +||||+|...+..+.++.++.|--++|+|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999887766 345555554 48999999999999999999999999998655443
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.89 E-value=0.00052 Score=60.51 Aligned_cols=67 Identities=16% Similarity=0.343 Sum_probs=55.6
Q ss_pred HHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 013141 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 223 ~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 290 (449)
++|...|.++||+|+++.+..+- ...-.|.++|.|..+++|++|++.||+..+.|++|..++.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 56666676699999999776553 24557889999999999999999999999999999999886543
No 178
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0039 Score=60.92 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCCCC------HhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeC-CeE
Q 013141 325 SNNATIFVGALDSDVS------DEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIG-KQT 392 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t------~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~ 392 (449)
.-..+|+|.|+|---. ...|..+|+++|+|..+.++.+ +|+.|++|.+..+|+.|++.|||+.|+ +++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3457899999986432 2446688999999999998853 699999999999999999999999987 677
Q ss_pred EEEEe
Q 013141 393 VRLSW 397 (449)
Q Consensus 393 l~v~~ 397 (449)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77764
No 179
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.71 E-value=0.0012 Score=62.93 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCC-CHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 325 SNNATIFVGALDSDV-SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~-t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
...+.|-+.-++... +.++|..+|.+||.|..|.+..+.--|.|+|.+..+|-+|.. .++..|+++.|+|.|-++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344556666666664 668999999999999999998877889999999999988864 799999999999999887
No 180
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.70 E-value=0.0046 Score=60.30 Aligned_cols=70 Identities=11% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccc--cCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCC--eeCCeEEEEE
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQ--FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLS 396 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~ 396 (449)
..|+|.|+-||..+.+|+|+.+|+. +-.+.+|.+-.+ ..+||+|++..||+.|.+.|... +|.|+.|-.+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3578899999999999999999964 678899988764 46899999999999999988543 4666655433
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.69 E-value=0.01 Score=40.79 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=45.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc----CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHh
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 177 (449)
...|+|+++. +++.++|+.+|..| + ...|.-+-|. .|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3479999984 58889999999999 4 4678888885 4999999999999999754
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.57 E-value=0.0069 Score=54.34 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhCCCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 222 DSILQETFSSKYPSVKGAKVIIDSNTGRT-KGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 222 ~~~l~~~f~~~~g~v~~i~~~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
++++++.+ ++||.|..|.|..++..... .--.||+|...++|.+|+-.|||+.|+|+.++..|....
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 45788889 59999999988877543222 234799999999999999999999999999998887554
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.42 E-value=0.014 Score=40.24 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=44.6
Q ss_pred CcEEEEcCCCCCCCHhHHHhhcccc---CceEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQF---GEILSVKIPVGKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~---G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l 383 (449)
...|+|.+++ .++.++|+.+|..| ....+|+.+.+ ..|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 4679999985 47789999999988 23567887765 57889999999999999765
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.33 E-value=0.0047 Score=60.73 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=66.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 280 (449)
....++.|+|.||-.-+|.-.|++++....|.|.+.+| |+. +..|||.|.+.++|.+.+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 34567899999999999999999999767777777733 322 55799999999999999999999887 6788
Q ss_pred eEEeecCCCC
Q 013141 281 MRIDVATPKK 290 (449)
Q Consensus 281 i~v~~~~~~~ 290 (449)
|.+.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 8888876543
No 185
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.12 E-value=0.028 Score=43.11 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=50.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEe-ecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVI-IDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~-~~~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 279 (449)
..+-|.|.+.|+. ....|.+.|+ +||+|.+..-. ++. ..........|+|.+..+|.+|+ ..||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 3456889999997 5667888895 99998877511 100 00122457899999999999999 6899999876
Q ss_pred ce-EEeecC
Q 013141 280 PM-RIDVAT 287 (449)
Q Consensus 280 ~i-~v~~~~ 287 (449)
.+ -|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 54 466653
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.00 E-value=0.038 Score=40.21 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=40.7
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 384 (449)
.+.+|. .|...-..||.++|+.||.|.=-.| . ...|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~-dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-N-DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-C-TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-c-CCcEEEEeecHHHHHHHHHHhc
Confidence 445554 9999999999999999998654433 3 5789999999999999998885
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.96 E-value=0.033 Score=44.77 Aligned_cols=75 Identities=28% Similarity=0.375 Sum_probs=56.9
Q ss_pred CCCCCcEEEEcCCCCCC-CHhH---HHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 323 GESNNATIFVGALDSDV-SDED---LREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~-t~~~---L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
.+++..+|.|.=|...+ ..+| |...++.||.|.+|.+. ++-.|.|.|.|..+|=+|+.++.. ...|..+++.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 35556778777665554 2344 44567889999999865 578999999999999999999876 557888888874
Q ss_pred C
Q 013141 399 R 399 (449)
Q Consensus 399 ~ 399 (449)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 3
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.91 E-value=0.0067 Score=60.64 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
...-+|||+|+...++.+-++.+...||-|.+++... |+|.+|.....+.+|+..++...+.+......+
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567999999999999999999999999988877644 899999999999999988888777665555555
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.88 E-value=0.019 Score=49.44 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=49.6
Q ss_pred CHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEecCCC
Q 013141 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 340 t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~~ 401 (449)
..+.|+++|..|+.+..+.++++-+-..|.|.+.++|.+|...|+ +..|.|..|+|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 458899999999999999999988889999999999999999999 99999999999998643
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.024 Score=51.25 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE-EEEEecCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-VRLSWGRN 400 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-l~v~~~~~ 400 (449)
..=|.|.+.++.-. .-|..+|++||.|++.....+...-+|+|.++.+|.+||.+ ||+.|+|.. |-|.-..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 34466777776644 56788999999999988887778899999999999999975 999998765 44555444
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.62 E-value=0.038 Score=47.51 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccc-cCce---EEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeCC---
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQ-FGEI---LSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGK--- 390 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v---~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g--- 390 (449)
...+|.|++||+.+|++++.+.++. ++.- .++....+ ..-|||.|.+.++.......++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999998887 6655 33432111 2579999999999999999999988753
Q ss_pred --eEEEEEecCC
Q 013141 391 --QTVRLSWGRN 400 (449)
Q Consensus 391 --~~l~v~~~~~ 400 (449)
....|+|+--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3556666553
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.45 E-value=0.087 Score=50.50 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=59.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
++.|+|-.+|..++..||..|+....-.|.++++++|.... +=..+|+|.+-++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn--rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN--RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc--eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999997566679999999975433 3368999999999999999999988744
No 193
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.44 E-value=0.06 Score=43.96 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=44.4
Q ss_pred HHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 224 ILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 224 ~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
+|.+.|. .||++.=|+++.+ .-+|+|.+-+.|.+|+ .++|..++|+.|+|+.-.+.
T Consensus 52 ~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 6778885 8999887777754 4699999999999998 79999999999999987765
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.44 E-value=0.22 Score=39.03 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=48.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
.+.+...|..++.++|..+.+..-..|..+++++|... .+-.++++|.+.++|++..+.+||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444455556666777666533445778888887442 45579999999999999999999998744
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.40 E-value=0.2 Score=39.19 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC-CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (449)
..+..+.+-..|+.++.++|..+.+.+- .|..++|++|.. .++-.++++|.+.++|......+||+.+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444555655666677777877766654 467888888753 34557999999999999999999998874
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.23 E-value=0.1 Score=37.97 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=41.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
.....+|+ +|..+...||.++|+ .||.|.-..|- | ..|||...+.+.|..++..+..
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFs-pfG~I~VsWi~-d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFS-PFGQIYVSWIN-D-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCC-CCCCEEEEEEC-T-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhc-cCCcEEEEEEc-C-------CcEEEEeecHHHHHHHHHHhcc
Confidence 34556665 999999999999996 99987655543 2 2799999999999999987763
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.85 E-value=0.011 Score=54.44 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=59.6
Q ss_pred cEEEEcCCCCCCCHhHHH---hhccccCceEEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 328 ATIFVGALDSDVSDEDLR---EPFSQFGEILSVKIPVGK---------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~---------g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
..+||-+|+..+..+.+. +.|.+||.|.+|.+.++. ..++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888876555554 578999999999887632 35899999999999999999999999999888
Q ss_pred EecCC
Q 013141 396 SWGRN 400 (449)
Q Consensus 396 ~~~~~ 400 (449)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 87663
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.82 E-value=0.014 Score=59.87 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCee--CCeEEEEEecCCCCC
Q 013141 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGRNPGN 403 (449)
Q Consensus 330 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~~~~~ 403 (449)
..+.|.+-..+-..|-.+|++||.|.+++.+++-..|.|+|.+.+.|..|+++|+|+++ -|...+|.|++.-..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 34555566667788999999999999999999999999999999999999999999985 488899999997543
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.81 E-value=0.12 Score=36.14 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=45.6
Q ss_pred CCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 338 DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 338 ~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
.++-++|+..++.|+- .+|..++.--||.|.|.++|+++....+++.+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999953 334455666799999999999999999999998888765
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.79 E-value=0.059 Score=52.87 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhc--cCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcC
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
....|.|+||.||..+..|+|+.+|+. |-.+.+|.+-.+.. =||+|++..+|..|.+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHH
Confidence 345567999999999999999999975 66788998877643 69999999999999987655
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.13 E-value=1.3 Score=40.54 Aligned_cols=173 Identities=9% Similarity=0.060 Sum_probs=102.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHHH----HhCC
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-------TGRTKGYGFVRFGDENERSRAMT----EMNG 273 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~-------~~~~~g~afV~f~~~~~A~~A~~----~l~g 273 (449)
....+.|.+.|+..+++-..+.+.|- +||.|++|.++.+.. .........+-|-+.+.|-.... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34456788999999999888888884 999999999997751 12234568899999998876543 2322
Q ss_pred --ceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHh---hc
Q 013141 274 --VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLRE---PF 348 (449)
Q Consensus 274 --~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~---~f 348 (449)
..+....+.+.+..-+............ +. .................++.|.|.--.....++-|.+ ++
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~--~~----~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEA--DF----SDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHhcCCcceeEEEEEEecccccccccccc--ch----hhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhh
Confidence 3356777777776542221110000000 00 0000000111122334567777765533333333333 22
Q ss_pred cccC----ceEEEEEeC--------CCcEEEEEecCHHHHHHHHHHhc
Q 013141 349 SQFG----EILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 349 ~~~G----~v~~v~i~~--------~~g~afV~F~~~~~A~~A~~~l~ 384 (449)
..-+ .|++|.++. ++.+|.++|-+..-|...+.-|.
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2222 477788874 36899999999999999888875
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.91 E-value=0.096 Score=45.05 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhh-CCCe---eEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~-~g~v---~~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
...+|.|+.||+++|++++.+.++ . +++. ..+.-...... .....-|+|.|.+.+++...+..++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 456899999999999999999774 4 5555 23331122111 1123469999999999999999999988743
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.90 E-value=0.036 Score=57.07 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 013141 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (449)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (449)
+.++.|.+-..+-.-|..+|..||.|.+.+.+++-+ .|.|+|.+.+.|..|++.++|+.+...+.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345555566778888999999999999999999865 79999999999999999999999888888999988874
Q ss_pred C
Q 013141 197 S 197 (449)
Q Consensus 197 ~ 197 (449)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 4
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.87 E-value=0.3 Score=39.40 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCCCceEEEcCCCCCCC-HHH---HHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCC
Q 013141 112 NDETKTIWIGDLFHWMD-ETF---LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t-~~~---l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (449)
+.+-.+|.|+=|..++. .+| |...++.||+|.+|.+.-.. .|.|.|.|..+|.+|+.++..... +.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~p---gt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAP---GT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCC---Cc
Confidence 45667899988776554 334 45566889999999875432 599999999999999999877433 23
Q ss_pred ccccccc
Q 013141 188 PFRLNWA 194 (449)
Q Consensus 188 ~~~~~~~ 194 (449)
-+.+.|.
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 4455554
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.84 E-value=1.2 Score=40.56 Aligned_cols=160 Identities=10% Similarity=0.168 Sum_probs=97.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecC-------CCCCcccEEEEEEccHHHHHHHHH----HhcC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-------QTGQSEGYGFVEFYSRAAAEKVLQ----SYSG 179 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-------~~g~~~g~afV~f~~~~~A~~Al~----~l~~ 179 (449)
+...+|.|...|+..+++-.++...|-.||+|++|.++.+. ...+......+-|-+.+.+-.... .|..
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44578899999999999999999999999999999999986 112234578899999988766552 2221
Q ss_pred CCCCCCCCccccccccc-----C--CCCCc--------------cccCCCceEEEcCCCCCCCHHHHH-H---HHhhhCC
Q 013141 180 SLMPNTDQPFRLNWATF-----S--GSDRR--------------TEACSDLSIFVGDLAPDVTDSILQ-E---TFSSKYP 234 (449)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-----~--~~~~~--------------~~~~~~~~l~v~~lp~~~t~~~l~-~---~f~~~~g 234 (449)
..-.-+...+.+.+..- . ..+.. ......+.|.|. +...++++++. + ++ ..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL-~~~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL-KNSN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh-ccCC
Confidence 11111222233322221 0 00000 122344566664 33445444332 2 23 1222
Q ss_pred C----eeEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 235 S----VKGAKVIIDS--NTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 235 ~----v~~i~~~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
. +++|.++... ....++.||.++|-+..-|.+.++-+.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 5666666442 234467899999999999999987665
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.60 E-value=0.11 Score=38.74 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 013141 254 GFVRFGDENERSRAMTEMN-GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (449)
Q Consensus 254 afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (449)
|+|+|.++.-|.+.++.-. ...+++..+.|.......... ...........++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~-----------------------~k~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHL-----------------------QKFQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCc-----------------------eEEEEEEcccCCEEEE
Confidence 6899999999999985322 233466666665443222110 0001223445788999
Q ss_pred cCCCCCCCHhHHHhhcc
Q 013141 333 GALDSDVSDEDLREPFS 349 (449)
Q Consensus 333 ~nlp~~~t~~~L~~~f~ 349 (449)
.|||...++|+|++.++
T Consensus 58 sgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCCCCCCChhhheeeEE
Confidence 99999999999998764
No 207
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.52 E-value=0.11 Score=54.31 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 013141 416 GAHYGGQGYSGNGYAFPPNQDPNMYAATAVPGA 448 (449)
Q Consensus 416 g~~~g~~g~~g~g~~~~~~~~~~~~~~~~~~g~ 448 (449)
|++|+++|+|++|||+-.+.....||++...|+
T Consensus 1195 Gggys~gGygsGGYGgsa~~~~~~~Gagvg~Gy 1227 (1282)
T KOG0921|consen 1195 GGGYSGGGYGSGGYGGSAPSARANYGAGVGNGY 1227 (1282)
T ss_pred CCCCCCCCcCCCCCCCCCCCCCCCccccccCCC
Confidence 445666777788888776666556776655554
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.19 E-value=0.039 Score=51.04 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=63.0
Q ss_pred CceEEEcCCCCCCCHHHHH---HHHhhhCCCeeEEEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 208 DLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSN--TG-RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~---~~f~~~~g~v~~i~~~~~~~--~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
.+-+||-+|+..+..+++. +.|+ .||.|..|.+.++.. .+ .....++|+|..+++|..||...+|...+++.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3567888888877655554 5785 889999998887752 11 112338999999999999999999999999998
Q ss_pred EEeecCCCC
Q 013141 282 RIDVATPKK 290 (449)
Q Consensus 282 ~v~~~~~~~ 290 (449)
+..+.+.+.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 888777654
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.90 E-value=0.083 Score=39.31 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=43.9
Q ss_pred EEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCc----cccCCCceEEEcCCCCCCCHHHHHHHH
Q 013141 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR----TEACSDLSIFVGDLAPDVTDSILQETF 229 (449)
Q Consensus 160 afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~~lp~~~t~~~l~~~f 229 (449)
|+|+|.++.-|++.++. ....+......+++........... ....+.++|.|.|||..+++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999954 3333222223333322221111111 344667899999999999999998776
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.26 E-value=0.6 Score=45.00 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=58.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (449)
.++.|.|-.+|..+|-.||..|+..+- .|.++++++|... .+=.++|+|.+.++|....+.+||+.+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 388999999999999999999998765 5889999997542 3346899999999999999999998874
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.80 E-value=0.27 Score=35.59 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCCCHhHHHhhccccC-----ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 337 SDVSDEDLREPFSQFG-----EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 337 ~~~t~~~L~~~f~~~G-----~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
..++..+|..++...+ .|-.|+|. ..++||+-.. +.|..+++.|++..+.|+.|+|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577788888876653 45667776 5688998864 5889999999999999999999864
No 212
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.27 E-value=1 Score=47.27 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=46.3
Q ss_pred CCCCHhHHHhhccccCceE-----EEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 337 SDVSDEDLREPFSQFGEIL-----SVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 337 ~~~t~~~L~~~f~~~G~v~-----~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
..++..+|..++..-+.|. .|+|. ..+.||+.. .+.|...+..|++..+.|+.|.|+.++
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 4577788887776655443 35555 468899986 467889999999999999999999875
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.05 E-value=0.87 Score=39.35 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcceEEeecCCCC
Q 013141 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 221 t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~~~~~~ 290 (449)
..+.|+++|. .++.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999995 9999888877754 2357899999999999999999 899999999999985543
No 214
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=88.49 E-value=1.1 Score=34.58 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCC
Q 013141 122 DLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDR 201 (449)
Q Consensus 122 nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 201 (449)
-||+.++ .|-++|+.-|.|.+|..+..-.+ ..|+-.++|..-.. +-.+++..........
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~v-Dg~i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQV-DGNIRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhc-cCcEEEccCCCcccEE
Confidence 3777664 49999999999998876553211 12232334432211 1123333222111111
Q ss_pred ccccCCCceEEEcCCCCCCCHHHHHHHHhhh--CCCeeEEEEeecCCCCCcceEEEEEeCCH
Q 013141 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (449)
Q Consensus 202 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~--~g~v~~i~~~~~~~~~~~~g~afV~f~~~ 261 (449)
-......+.+ .--|..+|..+++++|+|. |-.|.+-.+.+|.-..-+-..||..|...
T Consensus 70 i~gTPsgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1111111222 2246788999999999753 33344444455532222345688888765
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.04 E-value=2.4 Score=30.59 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHhhhCCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 218 PDVTDSILQETFSSKYPS-----VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~-----v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++..+|..++. ..+. |-.|.+..+ |+||+-... .|..+++.|++..+.|+.++|+.+
T Consensus 11 dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAIC-NEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHH-TCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHH-hccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578889999886 4433 445666533 789987764 788999999999999999999864
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.71 E-value=0.34 Score=46.88 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=55.6
Q ss_pred EcCCCCCC-CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 013141 213 VGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 213 v~~lp~~~-t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 290 (449)
+.-.++.+ +.++|...|. .||+|..|.+-... -.|.|+|.+..+|-+|. ..++-.|+++.|+|.|..+..
T Consensus 377 lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFA-QFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhh-hcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 33344433 5678999996 99999999886542 25899999999997776 588899999999999998854
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.58 E-value=4 Score=28.64 Aligned_cols=55 Identities=22% Similarity=0.416 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 219 ~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.++.++++..|. .|.- . +++.++ .|| ||.|.+..+|+++....++..+....+.+
T Consensus 11 ~~~v~d~K~~Lr-~y~~-~--~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLR-KYRW-D--RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHh-cCCc-c--eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467889999995 8862 3 333332 344 89999999999999999999887766654
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=2.6 Score=42.18 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHhHHHhhcccc----CceEEEEEeCC--------------C--------------------
Q 013141 323 GESNNATIFVGALDSD-VSDEDLREPFSQF----GEILSVKIPVG--------------K-------------------- 363 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~----G~v~~v~i~~~--------------~-------------------- 363 (449)
....+++|-|-||.++ +...||.-+|+.| |.|.+|.|..+ .
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3566789999999997 7889999888766 68999988631 0
Q ss_pred -------------------cEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 013141 364 -------------------GCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWG 398 (449)
Q Consensus 364 -------------------g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 398 (449)
=+|.|+|.+.+.|....+..+|..|.. ..|-++|-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 268899999999999999999999984 55555553
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.21 E-value=5.4 Score=40.00 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhcc----CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 112 NDETKTIWIGDLFH-WMDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 112 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~----G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
...+++|-|-||-| .+..+||.-+|+.| |.|.+|.|.+... .-. ..+-+..+|..+...
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF------------Gke---RM~eEeV~GP~~el~- 234 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF------------GKE---RMKEEEVHGPPKELF- 234 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh------------hHH---HhhhhcccCChhhhc-
Confidence 56788999999998 67889999998876 4788998877632 111 112222233322110
Q ss_pred CcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
-.+... +... .....-++-.++.++ .|+ +..++. -||.|+|.+.+.|..
T Consensus 235 --~~~e~~------------~~s~-----sD~ee~~~~~~~kLR-~Yq-~~rLkY----------YyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 235 --KPVEEY------------KESE-----SDDEEEEDVDREKLR-QYQ-LNRLKY----------YYAVVECDSIETAKA 283 (650)
T ss_pred --cccccC------------cccc-----cchhhhhhHHHHHHH-HHH-hhhhee----------EEEEEEecCchHHHH
Confidence 000000 0000 011111112234443 333 122211 279999999999999
Q ss_pred HHHHhCCceecCcceEEeec
Q 013141 267 AMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~~ 286 (449)
..+.|+|..+......+...
T Consensus 284 vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLR 303 (650)
T ss_pred HHHhcCcceeccccceeeee
Confidence 99999999996655554443
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.96 E-value=0.54 Score=47.55 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
....+...++||+|+-..+..+-++.++..+|.|.++.... |+|+.|.....+.+|+..|+-..++|..+.+.-
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34556778999999999999999999999999988877664 999999999999999999999999888877654
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.51 E-value=0.67 Score=39.08 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCcEEEEcCCCCCCC-----HhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCe-EEEEEecC
Q 013141 326 NNATIFVGALDSDVS-----DEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRLSWGR 399 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t-----~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v~~~~ 399 (449)
-...+.+-+++..+- .....++|..|-+..-..++++.+...|.|.+.+.|..|...++.+.|.|+ .++.-|+.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 345566777766542 234456777777776677778888999999999999999999999999998 78777776
Q ss_pred C
Q 013141 400 N 400 (449)
Q Consensus 400 ~ 400 (449)
.
T Consensus 89 ~ 89 (193)
T KOG4019|consen 89 P 89 (193)
T ss_pred C
Confidence 5
No 222
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=86.16 E-value=0.85 Score=45.24 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=10.2
Q ss_pred HHHHHHhhhCCCCCCCC
Q 013141 11 AAAAAAAAVSGGAGGGS 27 (449)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (449)
.+|+.++||..-+.++-
T Consensus 131 gtA~~~~av~s~~~P~t 147 (742)
T KOG4274|consen 131 GTAPHSMAVVSTATPQT 147 (742)
T ss_pred ccchhHHHHhccCCCCc
Confidence 45556666666666663
No 223
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.89 E-value=3.4 Score=37.88 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=53.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc-eEEeec
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-MRIDVA 286 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~~ 286 (449)
+.=|-|.++++.- ..-|..+|. ++|+|.+.....+ -.+-.|.|.+..+|.+|| ..+|+.|++.. |-|+..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~-~cG~Vvkhv~~~n------gNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFS-RCGEVVKHVTPSN------GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHH-hhCeeeeeecCCC------CceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 3456777888854 446777884 9999888765422 347899999999999999 57888887654 446655
Q ss_pred CCCC
Q 013141 287 TPKK 290 (449)
Q Consensus 287 ~~~~ 290 (449)
.++.
T Consensus 268 tDks 271 (350)
T KOG4285|consen 268 TDKS 271 (350)
T ss_pred CCHH
Confidence 5543
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.15 E-value=1.1 Score=37.41 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcc
Q 013141 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY 298 (449)
Q Consensus 219 ~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 298 (449)
..+...|.+.+...++....+.+..- ..++..+.|.+++++.++++ .....+.+..+.+...++.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~----- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS----- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc-----
Confidence 45677777777544454434444322 24588999999999999884 45556777778887776543211
Q ss_pred hhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCC-CCHhHHHhhccccCceEEEEEeC
Q 013141 299 SSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPV 361 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~ 361 (449)
.........=|.|.+||.. .+++-|+.+.+.+|.+.+++...
T Consensus 97 ---------------------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 97 ---------------------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ---------------------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0111122344788899988 67888999999999999998765
No 225
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.04 E-value=0.29 Score=49.06 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCC
Q 013141 20 SGGAGGGSQPTP 31 (449)
Q Consensus 20 ~~~~~~~~q~~~ 31 (449)
+||+||-.|+-+
T Consensus 53 ~~~~~~~~~~~~ 64 (1179)
T KOG3648|consen 53 AGGGGPAGQQLP 64 (1179)
T ss_pred cCCCCchhhhhH
Confidence 344444444433
No 226
>COG4371 Predicted membrane protein [Function unknown]
Probab=77.06 E-value=2.4 Score=37.62 Aligned_cols=21 Identities=48% Similarity=1.028 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 013141 412 NHWNGAHYGGQGYSGNGYAFP 432 (449)
Q Consensus 412 ~~~~g~~~g~~g~~g~g~~~~ 432 (449)
++..||+|++++|+|+||+.|
T Consensus 71 ~gpsGGgY~gg~Y~GGGfgfP 91 (334)
T COG4371 71 GGPSGGGYSGGGYSGGGFGFP 91 (334)
T ss_pred CCCCCCCCCCCCCCCCCcCcC
Confidence 344566666666777777655
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.86 E-value=9 Score=34.84 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCc-eEEEEEeCCCcEEEEEecCHH
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGE-ILSVKIPVGKGCGFVQFANRK 374 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~g~afV~F~~~~ 374 (449)
....|+|.||+.++...||+..+.+-+- ..++...-..+.||+.|.|..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 3456999999999999999999987653 456666666899999997754
No 228
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=70.57 E-value=4.7 Score=37.67 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=9.2
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 013141 211 IFVGDLAPDVTDSILQETF 229 (449)
Q Consensus 211 l~v~~lp~~~t~~~l~~~f 229 (449)
|-+...|.++++-.|.+-+
T Consensus 152 L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 152 LNFPKQPGNINEWKLFETI 170 (465)
T ss_pred cCCCCCCCCchHHHHHHHH
Confidence 4444455555554444433
No 229
>COG4907 Predicted membrane protein [Function unknown]
Probab=67.41 E-value=5.3 Score=38.91 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=7.2
Q ss_pred HHHHHHHHHhcCCe
Q 013141 374 KDAEVALQKLQGTA 387 (449)
Q Consensus 374 ~~A~~A~~~l~g~~ 387 (449)
+...+|++.++..+
T Consensus 526 dkVvkam~~~~~~e 539 (595)
T COG4907 526 DKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHhCcHh
Confidence 44555665554443
No 230
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=66.53 E-value=9.1 Score=38.36 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=9.3
Q ss_pred EEEEEccHHHHHHHH
Q 013141 160 GFVEFYSRAAAEKVL 174 (449)
Q Consensus 160 afV~f~~~~~A~~Al 174 (449)
...++.+..++..+-
T Consensus 389 ~~~~~~sp~~~qq~q 403 (742)
T KOG4274|consen 389 SLPMLSSPSPGQQVQ 403 (742)
T ss_pred cccccCCCchHhhhh
Confidence 455666666666555
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.29 E-value=19 Score=32.89 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHH
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~ 169 (449)
......|+|+||+.++.-.||+..+.+.+.+ -+.+.. ..+.|-||+.|.+...
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKG 379 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccC
Confidence 3445669999999999999999999987643 223322 2345779999987543
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.93 E-value=33 Score=31.17 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHhhcc---CCcEEEEEEecCCCCCcccEEEEEEcc----HHHHHHHHHHhcCCCC--CCCCCcccccccc
Q 013141 125 HWMDETFLHNCFSHT---GQVVNVKVIRNKQTGQSEGYGFVEFYS----RAAAEKVLQSYSGSLM--PNTDQPFRLNWAT 195 (449)
Q Consensus 125 ~~~t~~~l~~~f~~~---G~v~~v~~~~~~~~g~~~g~afV~f~~----~~~A~~Al~~l~~~~~--~~~~~~~~~~~~~ 195 (449)
.+++.=||.+-+... -...+|+|.... .-||.|+- ..-..+.+..|+|..+ .+....++|..+.
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHh
Confidence 355555555555432 134567765543 57888764 4455666777788654 2333344443222
Q ss_pred cCCC-----------------CCccccCCCceEEEcCCCCC------------CCHHHHHHHHhhhCCCeeEEEEe
Q 013141 196 FSGS-----------------DRRTEACSDLSIFVGDLAPD------------VTDSILQETFSSKYPSVKGAKVI 242 (449)
Q Consensus 196 ~~~~-----------------~~~~~~~~~~~l~v~~lp~~------------~t~~~l~~~f~~~~g~v~~i~~~ 242 (449)
.+-. ..........+|++.+||-. -+++-|+..| +.||+|..|.+.
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdip 194 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIP 194 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCc
Confidence 1110 01112233457888888743 3577899999 699999998765
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.63 E-value=10 Score=30.01 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=28.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHH
Q 013141 117 TIWIGDLFHW---------MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168 (449)
Q Consensus 117 ~l~v~nLp~~---------~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~ 168 (449)
++.|-|++.. .+.++|++.|..|.++ +++.+.++. .+.|+++|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCCh
Confidence 4667777543 4568899999999876 466666643 67899999998754
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.24 E-value=22 Score=26.30 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHhHHHhhccc-cC-ceEEEEEeC---CCcEEEEEecCHHHHHHHHHHh
Q 013141 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 330 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l 383 (449)
-|+-..+...+..+|++.++. || .|.+|.... +...|||+|..-++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444557788899999988876 55 567776553 4568999999988888876554
No 235
>COG4907 Predicted membrane protein [Function unknown]
Probab=57.72 E-value=8.3 Score=37.65 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=4.3
Q ss_pred hHHHhhcccc
Q 013141 342 EDLREPFSQF 351 (449)
Q Consensus 342 ~~L~~~f~~~ 351 (449)
+..+++++.|
T Consensus 489 ~aFKnfLsd~ 498 (595)
T COG4907 489 QAFKNFLSDY 498 (595)
T ss_pred HHHHHHHHhH
Confidence 3344444443
No 236
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=57.53 E-value=22 Score=34.86 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHhhccCC
Q 013141 125 HWMDETFLHNCFSHTGQ 141 (449)
Q Consensus 125 ~~~t~~~l~~~f~~~G~ 141 (449)
.-++..+|.+++..||.
T Consensus 252 ~ltSsktlhdlyldcgS 268 (572)
T KOG4679|consen 252 SLTSSKTLHDLYLDCGS 268 (572)
T ss_pred ccccchhHHHHHHhhcc
Confidence 44567788888888874
No 237
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=57.04 E-value=15 Score=34.46 Aligned_cols=8 Identities=50% Similarity=1.107 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 013141 425 SGNGYAFP 432 (449)
Q Consensus 425 ~g~g~~~~ 432 (449)
||+||-.|
T Consensus 380 GGggyqqp 387 (465)
T KOG3973|consen 380 GGGGYQQP 387 (465)
T ss_pred CCCCCcCc
Confidence 34455444
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.72 E-value=31 Score=25.04 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHhHHHhhccc-cC-ceEEEEEeC---CCcEEEEEecCHHHHHHHHHHh
Q 013141 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 330 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l 383 (449)
-|+-.++...+..+|+..++. |+ .|.+|..+. +...|||++..-+.|.+.-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 455567888999999988876 44 566665543 4468999999888888765544
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.15 E-value=2.6 Score=41.88 Aligned_cols=69 Identities=7% Similarity=0.064 Sum_probs=54.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCC
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (449)
..++|+++|+++.++-.+|..+++.+-.+..+.+..+..-.+...+.+|.|.---....|+..|++.-+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 457899999999999999999999987777776655544445667889999877777777777777655
No 240
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=53.92 E-value=50 Score=22.29 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=40.7
Q ss_pred EEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCH----HHHHHHHHH
Q 013141 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR----KDAEVALQK 382 (449)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~----~~A~~A~~~ 382 (449)
++.|.++.=.--...|.+.+...-.|.++.+....+.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 456767766666788888888888899999998889999999854 444445543
No 241
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=53.81 E-value=31 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.408 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~----~~~~~~~g~afV~f~~~~~A~~ 266 (449)
..++.+||+|-+++-|-.-.+..++.+ -..|++.|||+| |++.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 357889999888766665444444433 245788889987 777766653
No 242
>COG4371 Predicted membrane protein [Function unknown]
Probab=52.34 E-value=27 Score=31.27 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=2.5
Q ss_pred CCeeCC
Q 013141 385 GTAIGK 390 (449)
Q Consensus 385 g~~~~g 390 (449)
|-.|+|
T Consensus 50 GGriGG 55 (334)
T COG4371 50 GGRIGG 55 (334)
T ss_pred CCCccC
Confidence 334444
No 243
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.24 E-value=7.6 Score=35.07 Aligned_cols=78 Identities=31% Similarity=0.591 Sum_probs=51.1
Q ss_pred CCCCCcEEEEcCCCCC------------CCHhHHHhhccccCceEEEEEeC---------C-------CcE---------
Q 013141 323 GESNNATIFVGALDSD------------VSDEDLREPFSQFGEILSVKIPV---------G-------KGC--------- 365 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~------------~t~~~L~~~f~~~G~v~~v~i~~---------~-------~g~--------- 365 (449)
+.....+|++.+||-. .+++.|+..|+.||.|..|.|+- + .+|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3445667888888733 36788999999999999998863 1 122
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeC----C----eEEEEEecCC
Q 013141 366 GFVQFANRKDAEVALQKLQGTAIG----K----QTVRLSWGRN 400 (449)
Q Consensus 366 afV~F~~~~~A~~A~~~l~g~~~~----g----~~l~v~~~~~ 400 (449)
|||.|-....-..|+..|.|+.+. + ..++|.|.+.
T Consensus 225 ayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 245555555555677777776542 2 3567777664
No 244
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.36 E-value=31 Score=33.14 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=44.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCC-cEEEEEEecCCCCCcccEEEEEEccHHHHHHHHH
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (449)
...|-|.++|.....+||...|+.|+. --+|+.+-|. .||-.|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 356889999999999999999999974 2345555553 69999999999999994
No 245
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.17 E-value=4.3 Score=40.41 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 393 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 393 (449)
....++|++.|+++.++..+|..+|+.+-.+.++.+... ....+|+|+-.-.-..|+.+||+..+....+
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 345788999999999999999999999877777766542 4678999987777788888888876654443
No 246
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=50.65 E-value=63 Score=31.18 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcCCCCC-CCHhHHHhhcccc----CceEEEEEeCC-----------------------------------
Q 013141 323 GESNNATIFVGALDSD-VSDEDLREPFSQF----GEILSVKIPVG----------------------------------- 362 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~----G~v~~v~i~~~----------------------------------- 362 (449)
....+..|-|-||.++ +...+|...|+.| |.|..|.|.++
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3556778999999986 7888999888765 67888877520
Q ss_pred -----------------C-------------------cEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 013141 363 -----------------K-------------------GCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWG 398 (449)
Q Consensus 363 -----------------~-------------------g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 398 (449)
. =+|.|++.+.+.+.......+|.++.. ..+.++|-
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 157899999999999888889988874 44555543
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.40 E-value=72 Score=23.18 Aligned_cols=58 Identities=9% Similarity=0.162 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~-v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
.-|+..++.+.+..+|++.+...|+. |..|..+.-+. ..--|||++...++|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 34556688999999999999655653 56665554432 223599999998888876543
No 248
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=49.74 E-value=54 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.+...++.-.+..++..-. .+.++|||.| |.+.+.+.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35778899888877777544544443322 3556777766 7777666543
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=49.48 E-value=22 Score=30.20 Aligned_cols=56 Identities=21% Similarity=0.122 Sum_probs=39.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCC--CcccEEEEEEccHHHHHHHHHH
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQS 176 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g--~~~g~afV~f~~~~~A~~Al~~ 176 (449)
+++|.. +.+..-++|..+-+ |.+..|.+.+..+ + ..+|-.||.|.+.+.|.++++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhh
Confidence 556666 43444455555555 7788887776543 3 5678999999999999998854
No 250
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=48.80 E-value=49 Score=23.93 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=33.6
Q ss_pred hHHHhhccccCceEEEEEeCC--CcEEEEEecCHHHHHHHHHHhc
Q 013141 342 EDLREPFSQFGEILSVKIPVG--KGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 342 ~~L~~~f~~~G~v~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~ 384 (449)
++|++.+..+| +....+.-. .+++|+-+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 66778888888 666777766 6788999989999998888774
No 251
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=46.20 E-value=30 Score=28.57 Aligned_cols=109 Identities=12% Similarity=-0.033 Sum_probs=60.4
Q ss_pred CCCHHHHHHHhhc-cCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCC-CCcc
Q 013141 126 WMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGS-DRRT 203 (449)
Q Consensus 126 ~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (449)
..+-..|...+.. ++....+.+..-. .++..+.|.+.+++.++++. ....+.+ ..+.+..-.+... ....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~~~--~~~~l~~W~~~~~~~~~~ 99 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNFNG--HFLILQRWSPDFNPSEVK 99 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccccc--cchhhhhhcccccccccc
Confidence 4566666666654 3333344444322 25899999999999999952 2223322 2333222111111 1111
Q ss_pred ccCCCceEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEee
Q 013141 204 EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVII 243 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~~g~v~~i~~~~ 243 (449)
......=|.|.|||.. .+++-++.+. ...|.+..+....
T Consensus 100 ~~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~t 139 (153)
T PF14111_consen 100 FEHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDENT 139 (153)
T ss_pred eeccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcCC
Confidence 1112223566899987 5666777777 4999988886543
No 252
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=45.83 E-value=6.8 Score=36.47 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCc
Q 013141 129 ETFLHNCFSHTGQV 142 (449)
Q Consensus 129 ~~~l~~~f~~~G~v 142 (449)
..||+++++..|.+
T Consensus 152 S~dlkdilseagtm 165 (423)
T PF02166_consen 152 SADLKDILSEAGTM 165 (423)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 34566666666543
No 253
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.26 E-value=64 Score=31.14 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCc-eEEEEEeCCCcEEEEEecCHHHHHHHHHH
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGE-ILSVKIPVGKGCGFVQFANRKDAEVALQK 382 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~g~afV~F~~~~~A~~A~~~ 382 (449)
.-..+|-|.+.|.....+||...|+.|+. --+|..+ +...||-.|.+...|..|+-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv-DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV-DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEe-ecceeEEeecchHHHHHHhhc
Confidence 34678999999999988999999999864 2334443 356899999999999999864
No 254
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.13 E-value=1.1e+02 Score=22.73 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=40.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 211 IFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 211 l~v~~lp~~~t~~~l~~~f~~~~g~-v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
-|+.-.+.+.+..+|++.+...|+. |.+|..+.-+. ..--|+|++...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 4555578889999999999655653 56666654432 2335999999999988875443
No 255
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.28 E-value=11 Score=36.18 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=50.6
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHhhc--cCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHH
Q 013141 115 TKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (449)
.|.+|+.+.....+.+ ++..+|.. .+++..+...++.....++|..|++|...+.+.+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567888877655544 89999998 6788889998887677889999999999999999884
No 256
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=41.84 E-value=84 Score=21.55 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=27.8
Q ss_pred CHhHHHhhccccC-ceEEEEEeCC--CcEEEEEecCHHHHHHHHHHhcCC
Q 013141 340 SDEDLREPFSQFG-EILSVKIPVG--KGCGFVQFANRKDAEVALQKLQGT 386 (449)
Q Consensus 340 t~~~L~~~f~~~G-~v~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~g~ 386 (449)
.-.+|.++|.+.| .|.++..... ++...+.+++.+.|.++++. +|.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCC
Confidence 4577888887766 6777776543 34444455665566666543 444
No 257
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=41.56 E-value=8.7 Score=39.21 Aligned_cols=12 Identities=0% Similarity=0.194 Sum_probs=5.3
Q ss_pred EEccHHHHHHHH
Q 013141 163 EFYSRAAAEKVL 174 (449)
Q Consensus 163 ~f~~~~~A~~Al 174 (449)
...+.+..++.+
T Consensus 235 ~~sD~e~Idrli 246 (556)
T PF05918_consen 235 DPSDPESIDRLI 246 (556)
T ss_dssp -SSSHHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 344455554444
No 258
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=40.07 E-value=60 Score=30.76 Aligned_cols=6 Identities=50% Similarity=0.993 Sum_probs=2.2
Q ss_pred CCCCCC
Q 013141 429 YAFPPN 434 (449)
Q Consensus 429 ~~~~~~ 434 (449)
+..|||
T Consensus 211 ~~~PPP 216 (318)
T PF06682_consen 211 YPDPPP 216 (318)
T ss_pred CCCCCC
Confidence 333333
No 259
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.68 E-value=46 Score=35.12 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013141 265 SRAMTE 270 (449)
Q Consensus 265 ~~A~~~ 270 (449)
.+||++
T Consensus 805 t~ACEE 810 (1102)
T KOG1924|consen 805 TAACEE 810 (1102)
T ss_pred HHHHHH
Confidence 334433
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.67 E-value=32 Score=32.97 Aligned_cols=70 Identities=10% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcE-EEEEEecCCC--CCcccEEEEEEccHHHHHHHHHHhcCCCC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (449)
.....|.|+.||+..++++|.+-..++-.-+ ...+.+...+ ..-.+.|||.|...++.......+++..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4567899999999999999998888764322 2222211111 11246799999999998888888888764
No 261
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=2.1e+02 Score=27.85 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhcc----CCcEEEEEEec
Q 013141 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHT----GQVVNVKVIRN 150 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~----G~v~~v~~~~~ 150 (449)
....+.+|-|=||.| .+...+|...|+.| |.+..|.|.+.
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 356788899999998 57788999888875 46777877665
No 262
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=38.43 E-value=88 Score=25.33 Aligned_cols=49 Identities=16% Similarity=0.389 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHhhhCC-CeeEEEEeecC----CCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYP-SVKGAKVIIDS----NTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g-~v~~i~~~~~~----~~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.+...|+ .-.+..++..- ..+.+.|||.| |++.+.+...
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 36788999998887777 33333333221 24567777776 6776665543
No 263
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=38.40 E-value=9.8 Score=42.14 Aligned_cols=17 Identities=41% Similarity=0.270 Sum_probs=7.4
Q ss_pred hCCCCCCCCCCCCCCCC
Q 013141 19 VSGGAGGGSQPTPQQPY 35 (449)
Q Consensus 19 ~~~~~~~~~q~~~qqqq 35 (449)
.+||..+-.|+-.+|||
T Consensus 310 a~~~~~~LS~P~~~~~~ 326 (1973)
T KOG4407|consen 310 ASGGITVLSQPFYPQQQ 326 (1973)
T ss_pred ccCCcccccccCchhhh
Confidence 34555444444443333
No 264
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=33 Score=35.01 Aligned_cols=7 Identities=14% Similarity=0.619 Sum_probs=3.0
Q ss_pred eEEEcCC
Q 013141 117 TIWIGDL 123 (449)
Q Consensus 117 ~l~v~nL 123 (449)
.|++-.+
T Consensus 235 vi~~pqm 241 (728)
T KOG4592|consen 235 VIYLPQM 241 (728)
T ss_pred ccccccC
Confidence 4444433
No 265
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=37.51 E-value=3e+02 Score=26.36 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=61.6
Q ss_pred cCCCCCCCHHHHHHHh----hccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 013141 121 GDLFHWMDETFLHNCF----SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (449)
Q Consensus 121 ~nLp~~~t~~~l~~~f----~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~ 196 (449)
.|.+++.+-+.++..| ++||.-.++++.+.-. .++|=+-|.|.-.-. + .+....+...++..+
T Consensus 118 T~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~--~---~l~~i~l~~~g~i~~------ 184 (326)
T cd00874 118 TDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS--K---LLPPLLLEERGEIEK------ 184 (326)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc--c---CCCcceeecCCCeEE------
Confidence 4557777777777655 6788777788877533 234445555533211 0 111111111111111
Q ss_pred CCCCCccccCCCceEEEcCCCCCCCHHHHH---HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 013141 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (449)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~---~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~ 260 (449)
-.-..+..++|..+.+..+. +.+. .. ...++.+..+...+.+.|++.+.+..
T Consensus 185 ----------irg~~~~~~l~~~va~r~~~~a~~~L~-~~-~~~dv~i~~~~~~~~s~G~~i~L~ae 239 (326)
T cd00874 185 ----------IRGISHAANLPPHVAERQAEAAAALLR-KA-LGLQIEIEPEDQSALGPGSGIVLWAE 239 (326)
T ss_pred ----------EEEEEEEccCCHHHHHHHHHHHHHHHh-hc-cCCCeEEEEEecCCCCCCEEEEEEEE
Confidence 12256788999888776554 4453 41 22344555554447778888776653
No 266
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.38 E-value=5.6 Score=38.45 Aligned_cols=72 Identities=7% Similarity=-0.091 Sum_probs=57.8
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
...++..++...+++++.-+|..||.|..+.+.+ .+..+||+-.+ .++..+|.-+.-..+.+..++|..++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567888999999999999999999999888765 24578888765 467778877777778888888887764
No 267
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=36.88 E-value=50 Score=26.18 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=25.9
Q ss_pred cEEEEcCCCCC---------CCHhHHHhhccccCceEEEEEeCC----CcEEEEEecCHHH-HHHHH
Q 013141 328 ATIFVGALDSD---------VSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANRKD-AEVAL 380 (449)
Q Consensus 328 ~~l~V~nlp~~---------~t~~~L~~~f~~~G~v~~v~i~~~----~g~afV~F~~~~~-A~~A~ 380 (449)
.++.|.|++.. .+.++|++.|+.|..++ |+.+.+ .++++|+|...-. -..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 45667777543 35588999999997664 444332 5899999975443 33344
No 268
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.37 E-value=78 Score=21.84 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCcEEEEEEe
Q 013141 130 TFLHNCFSHTGQVVNVKVIR 149 (449)
Q Consensus 130 ~~l~~~f~~~G~v~~v~~~~ 149 (449)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999987665543
No 269
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.95 E-value=48 Score=31.87 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccC-ceEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
..+.|.|.+||+..++++|.+-...+- .|....+... .+.+||.|...++...-...++|..|-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356789999999999999988887753 2333334321 378999999999988888888887653
No 270
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.84 E-value=40 Score=32.07 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=26.8
Q ss_pred EEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 366 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 366 afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
|||+|++.++|..|++.+.... .+.++++.+-++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998765543 35557776666544
No 271
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.54 E-value=80 Score=32.40 Aligned_cols=8 Identities=0% Similarity=-0.217 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 013141 263 ERSRAMTE 270 (449)
Q Consensus 263 ~A~~A~~~ 270 (449)
++.++++.
T Consensus 431 d~~~nse~ 438 (728)
T KOG4592|consen 431 DPYANSEL 438 (728)
T ss_pred hHHHHHHH
Confidence 34444433
No 272
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=34.82 E-value=1.2e+02 Score=21.38 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=36.1
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~ 372 (449)
..++|.++.=.--...+.+.+..-..|.++.+...++.+.|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 456676666555567788888887779999999888999999988
No 273
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=34.48 E-value=26 Score=27.28 Aligned_cols=17 Identities=47% Similarity=1.072 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 013141 416 GAHYGGQGYSGNGYAFP 432 (449)
Q Consensus 416 g~~~g~~g~~g~g~~~~ 432 (449)
|-.||++|+|.+.||.+
T Consensus 78 gtsYg~ggyGsnaYG~~ 94 (132)
T PF04626_consen 78 GTSYGGGGYGSNAYGVQ 94 (132)
T ss_pred ceeecCCcccccccCCC
Confidence 44566667777677654
No 274
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=32.70 E-value=2.1e+02 Score=23.02 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred CcEEEEcCCCCC---CCHhHHHhhccccC-ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 327 NATIFVGALDSD---VSDEDLREPFSQFG-EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 327 ~~~l~V~nlp~~---~t~~~L~~~f~~~G-~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
...|.|+..... .+-+.|.+.++.-| .++++... .+...|+|++.++-.+|.+.|....=++..|.+..+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 345666655333 46678888888776 34555443 5689999999999999998887665555666666554
No 275
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.52 E-value=80 Score=29.99 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=34.2
Q ss_pred EEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHH
Q 013141 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (449)
Q Consensus 160 afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f 229 (449)
|||.|++..+|..|++.+..... ..+++..+. +...|.=.||..+..+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999985444322 233333332 22345556776666666666554
No 276
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=32.02 E-value=1e+02 Score=21.75 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 223 ~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
++|++.|.+..=.|..+.-+....+..+-..-||+.....+...+ ++=..+++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 466777753444577777777766667777788888776553333 3444567788888776554
No 277
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=31.73 E-value=1.6e+02 Score=22.88 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~ 266 (449)
.+.+..+|++.+...++.-.+..++..-. .++++||+-| |.|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 55688899988887777766655554432 3566777766 777766553
No 278
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=31.03 E-value=16 Score=37.33 Aligned_cols=11 Identities=18% Similarity=-0.043 Sum_probs=4.3
Q ss_pred eCCHHHHHHHH
Q 013141 258 FGDENERSRAM 268 (449)
Q Consensus 258 f~~~~~A~~A~ 268 (449)
|...|..--++
T Consensus 330 fs~vEcLL~af 340 (556)
T PF05918_consen 330 FSYVECLLYAF 340 (556)
T ss_dssp HHHHHHHHHHH
T ss_pred chHhhHHHHHH
Confidence 33344433333
No 279
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=30.81 E-value=89 Score=29.61 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=4.3
Q ss_pred CCCCCCCCCCc
Q 013141 428 GYAFPPNQDPN 438 (449)
Q Consensus 428 g~~~~~~~~~~ 438 (449)
+++..+.++|.
T Consensus 207 ~~~~~~~PPPP 217 (318)
T PF06682_consen 207 GWGGYPDPPPP 217 (318)
T ss_pred CCCCCCCCCCC
Confidence 33333434443
No 280
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.51 E-value=91 Score=22.96 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=24.6
Q ss_pred ceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCe
Q 013141 353 EILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTA 387 (449)
Q Consensus 353 ~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~ 387 (449)
.|.++..+.+ +|+.||+=.+..+..+|++.+.+..
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 5677766654 8999999999999999998775543
No 281
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.04 E-value=80 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=21.5
Q ss_pred cEEEEEecCHHHHHHHHHHhcCCeeC
Q 013141 364 GCGFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 364 g~afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
...+|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36799999999999999988766553
No 282
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=28.32 E-value=1.5e+02 Score=25.77 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=2.4
Q ss_pred EEcCCC
Q 013141 212 FVGDLA 217 (449)
Q Consensus 212 ~v~~lp 217 (449)
+|++|-
T Consensus 9 LiGrL~ 14 (186)
T PRK07772 9 VVGNLT 14 (186)
T ss_pred EEEEeC
Confidence 334443
No 283
>PF14893 PNMA: PNMA
Probab=27.86 E-value=62 Score=30.90 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeec--CCCCCcceEEEEEeCC
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID--SNTGRTKGYGFVRFGD 260 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~--~~~~~~~g~afV~f~~ 260 (449)
+..+.|.|.+||.++++++|.+.+....-.+-..+++-. ...-..+ .++|+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~-aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAK-AALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccc-eeeeeccc
No 284
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.52 E-value=57 Score=29.12 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEE
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV 145 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 145 (449)
......+||+-|||..++++.|.++.+.+|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34577899999999999999999999999855444
No 285
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=25.99 E-value=2.7e+02 Score=20.51 Aligned_cols=49 Identities=10% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEe----ecCCCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~----~~~~~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.+...++.=.+..++ ..-..+.+.|+|.| |.+.+.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 4567888888776555542222222 22234556777766 7777766543
No 286
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.76 E-value=1.4e+02 Score=24.67 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHhHHHhhccc-cC-ceEEEEEeC---CCcEEEEEecCHHHHHHHHHHh
Q 013141 331 FVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 331 ~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l 383 (449)
++-.++...+..+|++.++. |+ .|..|..+. +...|||++....+|......+
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
No 287
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.97 E-value=2.4e+02 Score=21.14 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred HhHHHhhccccC-ceEEEEEeCCC--cEEEEEecCHHHHHHHHHHhc
Q 013141 341 DEDLREPFSQFG-EILSVKIPVGK--GCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 341 ~~~L~~~f~~~G-~v~~v~i~~~~--g~afV~F~~~~~A~~A~~~l~ 384 (449)
.+.++++++..| +++++.+..+. -.+.+++.|.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466777777765 78888887653 577889999998888765553
No 288
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.12 E-value=7.6 Score=39.46 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCC
Q 013141 21 GGAGGGSQPTPQQP 34 (449)
Q Consensus 21 ~~~~~~~q~~~qqq 34 (449)
|-+|+..+.-+|-+
T Consensus 51 ~~~~~~~~~~~~~~ 64 (1179)
T KOG3648|consen 51 GQAGGGGPAGQQLP 64 (1179)
T ss_pred cccCCCCchhhhhH
Confidence 44444444444333
No 289
>PRK11901 hypothetical protein; Reviewed
Probab=23.30 E-value=1.5e+02 Score=27.99 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=41.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcc-cEEEEEEccHHHHHHHHHHhcCC
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE-GYGFVEFYSRAAAEKVLQSYSGS 180 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~-g~afV~f~~~~~A~~Al~~l~~~ 180 (449)
..+|-|-. ...++.|..|...++ +..+++......|+.- -.-|=.|.+.++|..|++.|-..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 33444444 446888999988885 4667777765555542 12334599999999999886543
No 290
>PRK11901 hypothetical protein; Reviewed
Probab=23.13 E-value=2.1e+02 Score=27.09 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV--RFGDENERSRAMTEMNG 273 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~g 273 (449)
....+|-|..+ .+++.|..|.. .++ +..+++......|+.. |.+| .|.+.++|++|++.|-.
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~-~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAK-KQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHH-HcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 34455655543 45778888884 665 4556666554444432 3333 59999999999988764
No 291
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.99 E-value=2.9e+02 Score=22.56 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 013141 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (449)
Q Consensus 222 ~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 287 (449)
|.+|+..| -|.-+..+...... ....+-++.+.+.. ...++..+.++.+.+++++|....
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 45666555 23334444444331 12335666676665 445777899999999999998764
No 292
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.96 E-value=72 Score=27.30 Aligned_cols=41 Identities=10% Similarity=0.188 Sum_probs=33.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceecCc-ceEEeecCCCCC
Q 013141 251 KGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRIDVATPKKA 291 (449)
Q Consensus 251 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~~~~~~~ 291 (449)
.+..-|.|.+.+.|..|...++...|.++ .++..++.+.-.
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 44567889999999999999999999888 788877776543
No 293
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=22.39 E-value=48 Score=33.60 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=5.2
Q ss_pred CCHHHHHHHH
Q 013141 220 VTDSILQETF 229 (449)
Q Consensus 220 ~t~~~l~~~f 229 (449)
...+.|+..+
T Consensus 551 p~sErl~~av 560 (757)
T KOG4368|consen 551 PPSERLLAAV 560 (757)
T ss_pred ChHHHHHHHH
Confidence 3445555555
No 294
>PRK10905 cell division protein DamX; Validated
Probab=22.38 E-value=1.6e+02 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHhhccCCcEEEEEEecCCCCCc-ccEEEEEEccHHHHHHHHHHhcC
Q 013141 125 HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQS-EGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 125 ~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~-~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
-..+++.|++|..+.| +....+......|+. .-.-+=.|.+.++|++|++.|-.
T Consensus 254 A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 254 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred ecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 3446788999998885 455555555444542 22334469999999999988654
No 295
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=22.27 E-value=2e+02 Score=21.63 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=34.3
Q ss_pred cCCCCCCCHhHHHhhccccCc-eEEEEEeCC--CcEEEEEecCHHHHHHHHHHhc
Q 013141 333 GALDSDVSDEDLREPFSQFGE-ILSVKIPVG--KGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 333 ~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~ 384 (449)
..+-+.++...|..-|-.-|. -.-..+.+| +..|.|+|.+.+.+..|...|-
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 345556666777655544442 122333334 6899999999999999998874
No 296
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.18 E-value=3.3e+02 Score=20.10 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=36.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCee--EEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~--~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
..|++..++..++-++|.+.+.+.|.-.. ...+. .| .-|. .|+|.+.++-+.|++.+.
T Consensus 9 gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D-EEGD-----p~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 9 GDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID-EEGD-----PCTISSQMELEEAFRLYE 69 (83)
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC-CCCC-----ceeecCHHHHHHHHHHHH
Confidence 35778888888888776655543333322 22222 33 2233 488999999999987654
No 297
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.04 E-value=1.3e+02 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.2
Q ss_pred cccEEEEEEccHHHHHHHHHHhcC
Q 013141 156 SEGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 156 ~~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
.+||-|||=.+.+++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 579999999999999999965544
No 298
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=21.91 E-value=1.8e+02 Score=20.64 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=40.6
Q ss_pred HHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 013141 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 223 ~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 289 (449)
++|++.|.+..=++..+..+....+..+-..-+|+.....+-.. -|+=+.+++..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677775344457778777777766676777887765543332 23445568888888766544
No 299
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=21.82 E-value=4.4e+02 Score=27.14 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=34.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcc
Q 013141 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY 298 (449)
Q Consensus 250 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 298 (449)
.+|-|.| |+++++|.+|+. ++..-.|..|.|.+.-|+...+.....
T Consensus 382 ~~G~A~V-F~see~a~~ai~--~g~i~~gdVvViRyeGPkGgPGMpEml 427 (535)
T TIGR00110 382 FEGPAKV-FESEEEALEAIL--GGKIKEGDVVVIRYEGPKGGPGMPEML 427 (535)
T ss_pred EEEeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCCChhhhc
Confidence 4566655 999999999985 466668889999999998665544433
No 300
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=21.72 E-value=69 Score=31.73 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=8.2
Q ss_pred EEEEcCCCCCCCHh
Q 013141 329 TIFVGALDSDVSDE 342 (449)
Q Consensus 329 ~l~V~nlp~~~t~~ 342 (449)
-+.|..|..++.++
T Consensus 492 AvKIHqlNK~WrdE 505 (775)
T KOG1151|consen 492 AVKIHQLNKNWRDE 505 (775)
T ss_pred eEeeehhccchhhH
Confidence 45666666666543
No 301
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.48 E-value=1.2e+02 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=9.8
Q ss_pred EEEecCHHHHHHHHHHhcC
Q 013141 367 FVQFANRKDAEVALQKLQG 385 (449)
Q Consensus 367 fV~F~~~~~A~~A~~~l~g 385 (449)
+|+=+|.+.|-.-++.|.+
T Consensus 571 lvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 571 LVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred EechhhHHHhhHHHHHHhh
Confidence 4555555555555555543
No 302
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=20.17 E-value=52 Score=32.57 Aligned_cols=13 Identities=8% Similarity=-0.192 Sum_probs=6.5
Q ss_pred eEEEcCCCCCCCH
Q 013141 210 SIFVGDLAPDVTD 222 (449)
Q Consensus 210 ~l~v~~lp~~~t~ 222 (449)
..++-++|..++.
T Consensus 390 ifrrpeep~~ltl 402 (775)
T KOG1151|consen 390 IFRRPEEPETLTL 402 (775)
T ss_pred cccCCCCcccccH
Confidence 3444555555553
Done!