Query 013141
Match_columns 449
No_of_seqs 355 out of 3058
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.3E-44 4.6E-49 339.5 29.4 241 113-403 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-43 5.3E-48 333.6 26.5 247 110-401 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.3E-33 4.3E-38 252.9 17.7 171 113-291 13-183 (213)
4 4f02_A Polyadenylate-binding p 100.0 1.3E-32 4.3E-37 246.4 19.6 167 205-402 12-182 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 4E-32 1.4E-36 240.1 20.0 177 111-292 9-186 (196)
6 3md3_A Nuclear and cytoplasmic 100.0 6.1E-32 2.1E-36 232.3 20.3 166 116-288 1-166 (166)
7 2qfj_A FBP-interacting repress 100.0 6E-32 2E-36 242.8 20.6 176 113-291 26-207 (216)
8 1b7f_A Protein (SXL-lethal pro 100.0 7.1E-32 2.4E-36 232.4 20.1 165 114-286 2-168 (168)
9 1fxl_A Paraneoplastic encephal 100.0 1.4E-31 4.8E-36 230.2 21.1 164 115-286 2-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 3.8E-31 1.3E-35 229.4 21.9 168 114-287 2-175 (175)
11 1l3k_A Heterogeneous nuclear r 100.0 2.4E-31 8.2E-36 235.2 20.4 173 203-404 8-186 (196)
12 1b7f_A Protein (SXL-lethal pro 100.0 4.2E-31 1.4E-35 227.6 20.5 159 207-398 2-168 (168)
13 2qfj_A FBP-interacting repress 100.0 4.3E-31 1.5E-35 237.3 20.6 177 206-404 26-208 (216)
14 3md3_A Nuclear and cytoplasmic 100.0 6.6E-31 2.3E-35 225.8 20.8 160 209-400 1-166 (166)
15 2cjk_A Nuclear polyadenylated 100.0 5.9E-32 2E-36 232.7 13.8 165 114-289 2-166 (167)
16 1fxl_A Paraneoplastic encephal 100.0 7.9E-31 2.7E-35 225.5 20.7 159 207-398 1-167 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 4.9E-30 1.7E-34 222.4 19.4 161 207-399 2-175 (175)
18 2adc_A Polypyrimidine tract-bi 100.0 1E-29 3.4E-34 230.1 20.9 192 204-401 30-228 (229)
19 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-29 7.5E-34 235.6 23.5 192 205-400 6-282 (282)
20 2g4b_A Splicing factor U2AF 65 100.0 2E-29 6.7E-34 218.0 18.3 160 113-287 2-172 (172)
21 2cjk_A Nuclear polyadenylated 100.0 3E-30 1E-34 222.0 12.2 159 207-401 2-166 (167)
22 1qm9_A Polypyrimidine tract-bi 100.0 1.7E-29 6E-34 223.6 16.8 189 207-401 2-197 (198)
23 1fje_B Nucleolin RBD12, protei 100.0 7.5E-30 2.6E-34 221.3 13.5 164 204-401 9-174 (175)
24 2yh0_A Splicing factor U2AF 65 100.0 4.7E-29 1.6E-33 220.8 18.3 169 113-291 2-196 (198)
25 1fje_B Nucleolin RBD12, protei 100.0 4.3E-30 1.5E-34 222.8 11.2 166 111-289 9-174 (175)
26 3smz_A Protein raver-1, ribonu 100.0 1.1E-28 3.7E-33 231.1 21.4 173 114-292 94-267 (284)
27 3tyt_A Heterogeneous nuclear r 100.0 4.8E-29 1.6E-33 220.7 17.8 163 114-286 3-204 (205)
28 3tyt_A Heterogeneous nuclear r 100.0 5.1E-29 1.8E-33 220.5 17.2 186 207-398 3-204 (205)
29 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-28 5.4E-33 229.8 21.1 166 111-287 5-281 (282)
30 2yh0_A Splicing factor U2AF 65 100.0 2.5E-28 8.6E-33 216.0 21.0 177 207-403 3-196 (198)
31 2g4b_A Splicing factor U2AF 65 100.0 1.5E-28 5.2E-33 212.4 17.8 153 207-399 3-172 (172)
32 2adc_A Polypyrimidine tract-bi 100.0 3.5E-28 1.2E-32 219.9 20.1 165 112-289 31-228 (229)
33 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-28 4.6E-33 231.4 16.9 171 114-289 116-291 (292)
34 1qm9_A Polypyrimidine tract-bi 100.0 4.3E-28 1.5E-32 214.6 16.6 163 114-289 2-197 (198)
35 3sde_A Paraspeckle component 1 100.0 1.3E-27 4.5E-32 220.5 19.2 159 111-290 18-180 (261)
36 3sde_A Paraspeckle component 1 99.9 1.3E-26 4.3E-31 214.0 19.1 155 204-403 18-181 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 5.7E-22 2E-26 168.4 15.0 146 144-292 2-153 (158)
38 2i2y_A Fusion protein consists 99.9 1.2E-21 4E-26 164.8 11.8 138 248-402 10-149 (150)
39 2kn4_A Immunoglobulin G-bindin 99.9 4.7E-21 1.6E-25 162.7 14.7 146 238-404 2-153 (158)
40 4f25_A Polyadenylate-binding p 99.8 3.7E-21 1.3E-25 153.8 9.5 107 114-224 4-113 (115)
41 4f25_A Polyadenylate-binding p 99.8 6.4E-20 2.2E-24 146.6 11.2 110 207-343 4-113 (115)
42 2i2y_A Fusion protein consists 99.8 5.9E-20 2E-24 154.4 11.3 128 154-290 10-149 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-19 5.7E-24 139.7 9.8 82 113-196 17-98 (99)
44 1u6f_A Tcubp1, RNA-binding pro 99.8 5.3E-19 1.8E-23 146.5 13.3 87 111-199 38-124 (139)
45 4fxv_A ELAV-like protein 1; RN 99.8 7.8E-19 2.7E-23 136.0 11.7 82 206-288 17-98 (99)
46 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.7E-19 2.3E-23 148.9 11.3 82 324-405 36-123 (156)
47 3r27_A HnRNP L, heterogeneous 99.8 1.9E-18 6.5E-23 132.0 11.1 79 323-401 17-97 (100)
48 1sjq_A Polypyrimidine tract-bi 99.8 1.4E-18 4.8E-23 134.2 9.7 82 323-404 12-95 (105)
49 2dgu_A Heterogeneous nuclear r 99.8 5.6E-18 1.9E-22 132.6 13.3 81 324-406 8-88 (103)
50 3pgw_S U1-70K; protein-RNA com 99.8 5.5E-19 1.9E-23 173.4 9.2 82 325-406 100-187 (437)
51 2cq1_A PTB-like protein L; RRM 99.8 1.1E-17 3.6E-22 129.5 14.3 83 322-404 10-94 (101)
52 1x4d_A Matrin 3; structural ge 99.8 3.6E-18 1.2E-22 131.9 11.4 79 324-402 12-93 (102)
53 2wbr_A GW182, gawky, LD47780P; 99.8 2.7E-18 9.3E-23 126.1 9.4 74 326-399 6-79 (89)
54 1x4c_A Splicing factor, argini 99.8 1.4E-17 4.6E-22 131.5 14.2 81 324-405 12-97 (108)
55 3s8s_A Histone-lysine N-methyl 99.8 2.9E-18 9.9E-23 135.3 10.2 81 113-195 4-84 (110)
56 1wex_A Hypothetical protein (r 99.8 1E-17 3.4E-22 130.5 12.6 82 323-404 11-94 (104)
57 3s8s_A Histone-lysine N-methyl 99.8 8.8E-18 3E-22 132.5 12.3 84 206-290 4-87 (110)
58 2lea_A Serine/arginine-rich sp 99.8 1.3E-18 4.4E-23 142.9 7.7 125 159-292 6-130 (135)
59 1x4a_A Splicing factor, argini 99.7 2.4E-17 8.2E-22 130.4 14.5 84 321-404 16-102 (109)
60 1u6f_A Tcubp1, RNA-binding pro 99.7 1.1E-17 3.7E-22 138.6 12.5 83 322-404 37-125 (139)
61 2cq3_A RNA-binding protein 9; 99.7 3.6E-17 1.2E-21 128.0 14.4 85 321-405 9-97 (103)
62 2lkz_A RNA-binding protein 5; 99.7 1.3E-18 4.5E-23 133.0 6.0 84 112-195 6-93 (95)
63 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 4.1E-22 132.4 11.5 83 322-404 26-110 (119)
64 2lxi_A RNA-binding protein 10; 99.7 7.5E-19 2.6E-23 133.9 4.4 82 115-198 1-84 (91)
65 1why_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 128.8 11.6 81 323-403 13-95 (97)
66 2cpj_A Non-POU domain-containi 99.7 2.1E-17 7.2E-22 128.3 12.3 81 323-403 11-91 (99)
67 2lxi_A RNA-binding protein 10; 99.7 2.5E-18 8.7E-23 131.0 6.7 84 208-292 1-86 (91)
68 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-17 7.9E-22 131.8 12.7 89 110-200 10-98 (115)
69 2dnq_A RNA-binding protein 4B; 99.7 1.8E-17 6.1E-22 126.2 11.5 79 324-404 5-83 (90)
70 1x5u_A Splicing factor 3B subu 99.7 1.8E-17 6.3E-22 130.1 11.9 87 111-199 11-97 (105)
71 2cpz_A CUG triplet repeat RNA- 99.7 1.8E-17 6.3E-22 132.4 11.9 88 111-200 21-108 (115)
72 1whw_A Hypothetical protein ri 99.7 2.4E-17 8.2E-22 128.0 12.1 82 324-405 5-92 (99)
73 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-17 6.4E-22 129.4 11.3 88 111-200 8-95 (102)
74 2dnz_A Probable RNA-binding pr 99.7 2.8E-17 9.6E-22 126.5 12.2 80 325-404 3-88 (95)
75 2dgs_A DAZ-associated protein 99.7 3.1E-17 1.1E-21 127.3 12.5 86 111-199 6-91 (99)
76 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.8E-17 1.6E-21 127.2 13.6 83 322-404 10-96 (103)
77 2d9p_A Polyadenylate-binding p 99.7 3E-17 1E-21 128.4 12.2 84 322-405 10-97 (103)
78 2dgt_A RNA-binding protein 30; 99.7 3.8E-17 1.3E-21 125.0 12.5 80 323-404 6-85 (92)
79 2dgo_A Cytotoxic granule-assoc 99.7 7.4E-17 2.5E-21 128.9 14.8 84 322-405 10-99 (115)
80 2dnm_A SRP46 splicing factor; 99.7 1.6E-17 5.4E-22 130.0 10.6 86 111-198 9-94 (103)
81 2dnh_A Bruno-like 5, RNA bindi 99.7 4.8E-17 1.6E-21 127.7 13.4 88 111-199 11-99 (105)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.5E-17 5.1E-22 141.9 11.2 130 162-292 11-155 (165)
83 2dgp_A Bruno-like 4, RNA bindi 99.7 2.2E-17 7.5E-22 129.9 11.4 88 111-198 9-97 (106)
84 1x4f_A Matrin 3; structural ge 99.7 2.2E-17 7.7E-22 129.3 11.2 81 324-404 22-105 (112)
85 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.3E-17 4.5E-22 126.2 9.4 82 113-196 4-85 (87)
86 2lkz_A RNA-binding protein 5; 99.7 6.4E-18 2.2E-22 129.2 7.6 80 208-288 9-94 (95)
87 2cqd_A RNA-binding region cont 99.7 6.7E-17 2.3E-21 129.3 13.7 83 321-404 11-99 (116)
88 1x4g_A Nucleolysin TIAR; struc 99.7 3.3E-17 1.1E-21 129.6 11.7 81 324-404 22-102 (109)
89 2div_A TRNA selenocysteine ass 99.7 2.4E-17 8.3E-22 127.9 10.7 86 112-197 6-94 (99)
90 2jrs_A RNA-binding protein 39; 99.7 5.3E-17 1.8E-21 127.8 12.7 86 110-197 21-106 (108)
91 2cqc_A Arginine/serine-rich sp 99.7 1.9E-17 6.6E-22 127.5 10.0 84 110-195 10-93 (95)
92 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-17 5.7E-22 127.6 9.6 83 111-195 12-94 (94)
93 2kxn_B Transformer-2 protein h 99.7 2.8E-17 9.5E-22 133.7 11.3 86 110-197 41-126 (129)
94 2khc_A Testis-specific RNP-typ 99.7 2.1E-17 7.2E-22 132.7 10.5 83 110-194 35-117 (118)
95 2d9p_A Polyadenylate-binding p 99.7 5.7E-17 1.9E-21 126.8 12.7 87 109-199 9-95 (103)
96 2la6_A RNA-binding protein FUS 99.7 4.2E-17 1.4E-21 126.5 11.8 82 111-194 9-98 (99)
97 3p5t_L Cleavage and polyadenyl 99.7 8.6E-18 3E-22 127.9 7.7 80 116-197 2-83 (90)
98 2cph_A RNA binding motif prote 99.7 5.4E-17 1.9E-21 127.9 12.6 87 111-199 11-99 (107)
99 2cpz_A CUG triplet repeat RNA- 99.7 5.8E-17 2E-21 129.5 12.9 83 322-404 20-108 (115)
100 2cph_A RNA binding motif prote 99.7 4.7E-17 1.6E-21 128.3 12.2 83 322-404 10-100 (107)
101 2cq0_A Eukaryotic translation 99.7 6.8E-17 2.3E-21 126.4 13.0 83 323-405 11-99 (103)
102 2fy1_A RNA-binding motif prote 99.7 3.8E-17 1.3E-21 130.5 11.7 81 324-404 4-89 (116)
103 2cpd_A Apobec-1 stimulating pr 99.7 8.7E-17 3E-21 124.7 13.4 81 321-403 9-91 (99)
104 1x5t_A Splicing factor 3B subu 99.7 2.1E-17 7.1E-22 127.5 9.8 81 325-405 3-90 (96)
105 2m2b_A RNA-binding protein 10; 99.7 1.4E-17 4.7E-22 136.3 9.2 86 110-198 18-109 (131)
106 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.5E-22 125.1 8.9 82 112-195 4-85 (85)
107 2do4_A Squamous cell carcinoma 99.7 7E-17 2.4E-21 125.6 12.7 84 321-404 11-99 (100)
108 3md1_A Nuclear and cytoplasmic 99.7 2.5E-17 8.5E-22 123.4 9.7 81 115-197 1-81 (83)
109 3md1_A Nuclear and cytoplasmic 99.7 6.3E-17 2.2E-21 121.2 11.9 81 209-290 2-82 (83)
110 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.4E-17 1.5E-21 123.2 11.2 83 206-289 4-86 (87)
111 2dgx_A KIAA0430 protein; RRM d 99.7 4.2E-17 1.4E-21 125.7 11.2 81 324-404 6-93 (96)
112 1sjq_A Polypyrimidine tract-bi 99.7 2.7E-17 9.4E-22 126.9 10.1 81 112-200 13-95 (105)
113 1x5u_A Splicing factor 3B subu 99.7 5.2E-17 1.8E-21 127.5 11.8 83 322-404 10-98 (105)
114 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.1E-17 1.4E-21 127.4 11.1 82 324-405 9-96 (102)
115 2dnh_A Bruno-like 5, RNA bindi 99.7 6.1E-17 2.1E-21 127.1 12.1 82 324-405 12-101 (105)
116 2dnz_A Probable RNA-binding pr 99.7 6.7E-17 2.3E-21 124.4 11.9 86 206-292 3-88 (95)
117 2dgs_A DAZ-associated protein 99.7 8E-17 2.7E-21 125.0 12.4 81 323-404 6-92 (99)
118 2dhg_A TRNA selenocysteine ass 99.7 1E-16 3.5E-21 125.6 13.0 86 111-199 5-92 (104)
119 1p27_B RNA-binding protein 8A; 99.7 5.2E-17 1.8E-21 127.8 11.3 84 112-197 20-103 (106)
120 2ytc_A PRE-mRNA-splicing facto 99.7 2.9E-17 1E-21 123.6 9.4 76 324-399 9-85 (85)
121 1x4h_A RNA-binding protein 28; 99.7 6.6E-17 2.3E-21 128.3 12.0 86 111-198 11-102 (111)
122 2jrs_A RNA-binding protein 39; 99.7 1.2E-16 4E-21 125.9 13.2 88 202-290 20-107 (108)
123 2lea_A Serine/arginine-rich sp 99.7 6.7E-18 2.3E-22 138.6 6.2 120 253-405 6-131 (135)
124 2do4_A Squamous cell carcinoma 99.7 1.2E-16 4.1E-21 124.2 13.1 86 204-291 13-98 (100)
125 2hvz_A Splicing factor, argini 99.7 2.1E-17 7.3E-22 128.7 8.7 95 116-217 1-100 (101)
126 2cq0_A Eukaryotic translation 99.7 7.8E-17 2.7E-21 126.0 11.9 89 203-292 10-98 (103)
127 3ex7_B RNA-binding protein 8A; 99.7 2.6E-17 9E-22 133.8 9.4 83 322-404 17-105 (126)
128 2x1f_A MRNA 3'-END-processing 99.7 6.9E-17 2.4E-21 124.6 11.3 85 207-292 1-85 (96)
129 2cqc_A Arginine/serine-rich sp 99.7 1.2E-16 4E-21 123.0 12.5 85 203-288 10-94 (95)
130 2dnm_A SRP46 splicing factor; 99.7 5.3E-17 1.8E-21 127.0 10.7 82 323-404 9-96 (103)
131 2x1f_A MRNA 3'-END-processing 99.7 3.1E-17 1E-21 126.6 9.2 83 114-198 1-83 (96)
132 3lqv_A PRE-mRNA branch site pr 99.7 2E-17 6.7E-22 132.3 8.4 105 112-235 5-109 (115)
133 2dnp_A RNA-binding protein 14; 99.7 7.5E-17 2.6E-21 122.7 11.2 80 323-404 5-84 (90)
134 2cpf_A RNA binding motif prote 99.7 5.9E-17 2E-21 125.5 10.7 80 325-404 3-91 (98)
135 1whw_A Hypothetical protein ri 99.7 8.1E-17 2.8E-21 125.0 11.4 87 205-292 5-91 (99)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.5E-17 1.2E-21 139.5 10.1 138 256-405 11-156 (165)
137 1x5s_A Cold-inducible RNA-bind 99.7 5.8E-17 2E-21 126.5 10.5 82 323-404 8-95 (102)
138 2la4_A Nuclear and cytoplasmic 99.7 2.7E-17 9.4E-22 128.1 8.6 78 324-401 24-101 (101)
139 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-16 4.3E-21 125.1 12.4 80 323-404 11-97 (104)
140 2do0_A HnRNP M, heterogeneous 99.7 2.7E-16 9.3E-21 125.4 14.6 82 323-404 11-97 (114)
141 1x4e_A RNA binding motif, sing 99.7 2.4E-17 8E-22 124.1 7.8 80 113-194 3-82 (85)
142 1x5p_A Negative elongation fac 99.7 2.4E-16 8.1E-21 121.7 13.6 80 323-404 11-90 (97)
143 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7E-17 2.4E-21 121.5 10.4 82 205-287 4-85 (85)
144 2cqd_A RNA-binding region cont 99.7 6.8E-17 2.3E-21 129.3 10.8 86 110-198 12-97 (116)
145 3p5t_L Cleavage and polyadenyl 99.7 2.2E-17 7.6E-22 125.6 7.5 82 209-291 2-85 (90)
146 1wex_A Hypothetical protein (r 99.7 1.5E-16 5E-21 123.8 12.2 84 111-200 11-94 (104)
147 3ns6_A Eukaryotic translation 99.7 1.5E-17 5.3E-22 129.1 6.6 82 113-195 4-91 (100)
148 2dh8_A DAZ-associated protein 99.7 5.6E-17 1.9E-21 127.3 9.9 86 111-199 12-97 (105)
149 1p27_B RNA-binding protein 8A; 99.7 1.1E-16 3.9E-21 125.8 11.6 87 203-290 18-104 (106)
150 2la6_A RNA-binding protein FUS 99.7 1.5E-16 5.2E-21 123.3 12.1 84 203-287 8-99 (99)
151 1wf1_A RNA-binding protein RAL 99.7 1.7E-16 5.9E-21 125.6 12.6 80 323-404 23-103 (110)
152 2cqh_A IGF-II mRNA-binding pro 99.7 3.2E-17 1.1E-21 125.7 8.1 80 324-404 5-86 (93)
153 2kvi_A Nuclear polyadenylated 99.7 3E-17 1E-21 126.5 8.0 80 323-404 6-86 (96)
154 1x5t_A Splicing factor 3B subu 99.7 7.3E-17 2.5E-21 124.4 10.0 86 206-292 3-89 (96)
155 3r27_A HnRNP L, heterogeneous 99.7 4.4E-17 1.5E-21 124.5 8.5 81 111-197 17-97 (100)
156 2jvo_A Nucleolar protein 3; nu 99.7 8E-17 2.7E-21 126.8 10.3 82 321-404 25-106 (108)
157 1s79_A Lupus LA protein; RRM, 99.7 5.4E-17 1.8E-21 126.3 9.0 80 112-195 8-87 (103)
158 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1E-16 3.4E-21 125.2 10.4 87 205-292 9-95 (102)
159 2cpe_A RNA-binding protein EWS 99.7 1.7E-16 6E-21 126.3 12.0 83 322-404 10-106 (113)
160 3n9u_C Cleavage and polyadenyl 99.7 5.1E-17 1.8E-21 136.5 9.1 81 113-195 53-135 (156)
161 2kxn_B Transformer-2 protein h 99.7 1.2E-16 3.9E-21 130.1 10.9 86 204-290 42-127 (129)
162 2e5h_A Zinc finger CCHC-type a 99.7 1.5E-16 5.2E-21 122.1 11.0 83 204-287 12-94 (94)
163 1oo0_B CG8781-PA, drosophila Y 99.7 6.8E-17 2.3E-21 128.0 9.2 85 111-197 22-106 (110)
164 2dgv_A HnRNP M, heterogeneous 99.7 2.5E-16 8.7E-21 120.4 12.1 82 112-197 5-86 (92)
165 2jvr_A Nucleolar protein 3; RN 99.7 5.6E-17 1.9E-21 127.5 8.6 78 325-402 26-106 (111)
166 4a8x_A RNA-binding protein wit 99.7 1.2E-16 4.2E-21 121.0 10.2 78 326-403 3-87 (88)
167 2cpf_A RNA binding motif prote 99.7 1.4E-16 4.8E-21 123.3 10.7 86 206-292 3-91 (98)
168 2cq3_A RNA-binding protein 9; 99.7 2.8E-16 9.7E-21 122.8 12.6 86 110-199 10-95 (103)
169 1x4h_A RNA-binding protein 28; 99.7 2.1E-16 7.2E-21 125.4 12.0 88 204-292 11-104 (111)
170 2hvz_A Splicing factor, argini 99.7 7.5E-17 2.6E-21 125.6 9.2 77 328-404 1-78 (101)
171 2cpi_A CCR4-NOT transcription 99.7 2.4E-16 8.1E-21 124.9 12.2 79 324-402 12-102 (111)
172 1p1t_A Cleavage stimulation fa 99.7 4E-17 1.4E-21 127.9 7.5 84 112-197 5-88 (104)
173 2div_A TRNA selenocysteine ass 99.7 2.1E-16 7.3E-21 122.6 11.6 86 205-291 6-96 (99)
174 2cqp_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 125.6 8.2 83 111-195 11-93 (98)
175 2dgv_A HnRNP M, heterogeneous 99.7 8.8E-17 3E-21 122.9 9.2 81 324-404 5-89 (92)
176 3lqv_A PRE-mRNA branch site pr 99.7 3.2E-17 1.1E-21 131.0 7.0 105 205-353 5-109 (115)
177 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 126.4 10.3 86 109-200 25-110 (119)
178 2cq1_A PTB-like protein L; RRM 99.7 1.2E-16 4.2E-21 123.5 9.9 84 110-199 10-93 (101)
179 1x5o_A RNA binding motif, sing 99.7 3.9E-16 1.3E-20 124.5 13.1 85 111-196 21-111 (114)
180 2ywk_A Putative RNA-binding pr 99.7 1.2E-16 4E-21 123.0 9.7 78 323-400 12-94 (95)
181 2cq2_A Hypothetical protein LO 99.7 9.8E-17 3.3E-21 125.7 9.3 81 325-405 23-110 (114)
182 3s7r_A Heterogeneous nuclear r 99.7 8.3E-17 2.8E-21 121.7 8.6 80 111-193 7-86 (87)
183 1whx_A Hypothetical protein ri 99.7 4.9E-17 1.7E-21 128.7 7.7 76 326-401 9-84 (111)
184 1x4d_A Matrin 3; structural ge 99.7 6.7E-17 2.3E-21 124.8 8.2 81 111-197 11-92 (102)
185 2khc_A Testis-specific RNP-typ 99.7 2.2E-16 7.6E-21 126.7 11.6 79 321-399 34-118 (118)
186 2dng_A Eukaryotic translation 99.7 3.3E-16 1.1E-20 122.4 12.2 81 322-404 10-96 (103)
187 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.2E-21 121.5 11.2 79 322-402 17-96 (97)
188 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-16 6.4E-21 125.4 10.9 88 203-291 21-108 (110)
189 2err_A Ataxin-2-binding protei 99.7 1.4E-16 4.9E-21 125.7 10.0 81 321-401 23-107 (109)
190 2do0_A HnRNP M, heterogeneous 99.7 3.9E-16 1.3E-20 124.5 12.7 84 111-197 11-94 (114)
191 2dng_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 122.3 12.2 87 203-292 10-96 (103)
192 3ns6_A Eukaryotic translation 99.7 3.3E-17 1.1E-21 127.2 6.2 83 206-289 4-93 (100)
193 2dgp_A Bruno-like 4, RNA bindi 99.7 2.2E-16 7.4E-21 124.2 10.7 88 204-292 9-99 (106)
194 2fy1_A RNA-binding motif prote 99.7 2.8E-16 9.6E-21 125.4 11.3 86 205-292 4-89 (116)
195 3ex7_B RNA-binding protein 8A; 99.7 1.9E-16 6.6E-21 128.6 10.6 86 111-198 18-103 (126)
196 3q2s_C Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 146.7 6.8 75 326-400 67-149 (229)
197 3beg_B Splicing factor, argini 99.7 1.2E-16 4.2E-21 127.3 9.2 79 325-404 14-97 (115)
198 2dhg_A TRNA selenocysteine ass 99.7 2.4E-16 8.4E-21 123.4 10.7 86 205-292 6-93 (104)
199 2kt5_A RNA and export factor-b 99.7 4.4E-16 1.5E-20 126.1 12.5 85 111-198 31-115 (124)
200 2fc9_A NCL protein; structure 99.7 6.1E-16 2.1E-20 120.4 12.8 79 323-404 11-94 (101)
201 3ucg_A Polyadenylate-binding p 99.7 1.3E-16 4.5E-21 121.1 8.6 80 114-196 5-84 (89)
202 3ulh_A THO complex subunit 4; 99.7 1.9E-16 6.4E-21 124.8 9.8 82 111-195 25-106 (107)
203 1wez_A HnRNP H', FTP-3, hetero 99.7 2.1E-16 7E-21 123.0 9.8 81 112-197 12-92 (102)
204 2mss_A Protein (musashi1); RNA 99.7 7.7E-17 2.6E-21 118.2 6.9 75 117-194 1-75 (75)
205 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.6E-21 119.3 10.0 83 207-290 3-86 (88)
206 2cqg_A TDP-43, TAR DNA-binding 99.7 4.7E-16 1.6E-20 121.5 11.8 84 111-198 11-94 (103)
207 2cpe_A RNA-binding protein EWS 99.7 3.5E-16 1.2E-20 124.5 11.1 88 204-292 11-106 (113)
208 2ywk_A Putative RNA-binding pr 99.7 4E-16 1.4E-20 120.0 11.0 83 204-288 12-94 (95)
209 3pgw_S U1-70K; protein-RNA com 99.7 2.6E-17 8.8E-22 161.5 5.3 157 132-292 9-185 (437)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.2E-17 3.1E-21 124.8 7.4 83 111-197 15-98 (100)
211 1wi8_A EIF-4B, eukaryotic tran 99.7 3.6E-16 1.2E-20 122.4 10.8 86 204-292 11-97 (104)
212 1x4a_A Splicing factor, argini 99.7 6.3E-16 2.2E-20 122.1 12.2 83 111-198 18-100 (109)
213 3ucg_A Polyadenylate-binding p 99.7 4.9E-16 1.7E-20 118.0 11.0 81 207-289 5-85 (89)
214 3n9u_C Cleavage and polyadenyl 99.7 3.9E-16 1.3E-20 131.1 11.5 84 207-291 54-139 (156)
215 2ek1_A RNA-binding protein 12; 99.7 6.3E-17 2.2E-21 124.5 6.1 81 113-195 13-93 (95)
216 3s7r_A Heterogeneous nuclear r 99.7 6.4E-16 2.2E-20 116.7 11.5 80 205-286 8-87 (87)
217 2rs2_A Musashi-1, RNA-binding 99.7 1.2E-16 4.2E-21 126.1 7.7 84 111-197 21-104 (109)
218 1p1t_A Cleavage stimulation fa 99.7 1.9E-16 6.7E-21 124.0 8.9 86 206-292 6-91 (104)
219 2dh8_A DAZ-associated protein 99.7 4E-16 1.4E-20 122.4 10.6 87 204-292 12-98 (105)
220 2cqp_A RNA-binding protein 12; 99.7 2.8E-16 9.6E-21 121.6 9.6 84 205-289 12-95 (98)
221 2e5j_A Methenyltetrahydrofolat 99.7 5.6E-16 1.9E-20 119.6 11.2 80 323-403 15-96 (97)
222 1wg5_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 122.1 10.4 81 112-196 12-93 (104)
223 3ulh_A THO complex subunit 4; 99.7 7.1E-16 2.4E-20 121.4 11.9 82 204-287 25-106 (107)
224 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8E-17 2.7E-21 118.7 6.0 76 116-194 1-76 (77)
225 2e5i_A Heterogeneous nuclear r 99.7 1.1E-15 3.8E-20 122.1 12.8 77 327-403 25-104 (124)
226 1s79_A Lupus LA protein; RRM, 99.7 3.6E-16 1.2E-20 121.7 9.7 81 205-288 8-88 (103)
227 2fc8_A NCL protein; structure 99.7 9.6E-16 3.3E-20 119.5 12.1 83 322-404 10-95 (102)
228 2dgw_A Probable RNA-binding pr 99.7 1.1E-15 3.7E-20 116.5 12.1 83 205-291 7-89 (91)
229 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-15 4E-20 119.3 12.5 86 204-292 11-96 (103)
230 2wbr_A GW182, gawky, LD47780P; 99.7 3.6E-16 1.2E-20 114.8 8.9 74 207-287 6-79 (89)
231 1why_A Hypothetical protein ri 99.7 9.5E-16 3.3E-20 118.3 11.8 81 111-197 13-93 (97)
232 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.5E-16 2.9E-20 129.7 12.5 87 204-291 35-121 (156)
233 2rs2_A Musashi-1, RNA-binding 99.7 4.9E-16 1.7E-20 122.6 10.2 87 203-291 20-106 (109)
234 1sjr_A Polypyrimidine tract-bi 99.7 5.8E-16 2E-20 128.9 11.0 80 324-403 43-126 (164)
235 2dis_A Unnamed protein product 99.7 3.5E-16 1.2E-20 123.7 9.1 85 113-199 6-94 (109)
236 2kt5_A RNA and export factor-b 99.6 2.1E-15 7.1E-20 122.1 13.9 86 204-291 31-116 (124)
237 2ek1_A RNA-binding protein 12; 99.6 2.6E-16 8.8E-21 121.1 7.9 82 206-288 13-94 (95)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.1E-16 1.4E-20 129.3 9.5 82 111-194 59-140 (140)
239 1nu4_A U1A RNA binding domain; 99.6 5.3E-16 1.8E-20 119.8 9.5 79 324-402 5-90 (97)
240 2dgx_A KIAA0430 protein; RRM d 99.6 7.7E-16 2.6E-20 118.5 10.4 82 206-291 7-92 (96)
241 1wel_A RNA-binding protein 12; 99.6 2.1E-16 7.1E-21 128.0 7.3 82 111-195 21-102 (124)
242 1x4b_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 124.3 9.4 79 325-404 25-109 (116)
243 2ki2_A SS-DNA binding protein 99.6 9.6E-17 3.3E-21 122.2 5.0 79 116-197 2-80 (90)
244 2dgw_A Probable RNA-binding pr 99.6 9.2E-16 3.1E-20 116.9 10.5 78 324-403 7-89 (91)
245 2cq4_A RNA binding motif prote 99.6 1.2E-16 4.1E-21 127.4 5.7 81 113-196 23-103 (114)
246 3zzy_A Polypyrimidine tract-bi 99.6 9.6E-16 3.3E-20 122.9 10.9 79 325-403 26-108 (130)
247 1x4e_A RNA binding motif, sing 99.6 1.5E-16 5.3E-21 119.6 5.9 81 206-287 3-83 (85)
248 2a3j_A U1 small nuclear ribonu 99.6 5.2E-16 1.8E-20 125.2 9.4 79 324-402 26-111 (127)
249 1wg1_A KIAA1579 protein, homol 99.6 5.6E-16 1.9E-20 117.3 9.1 76 326-402 4-79 (88)
250 2mss_A Protein (musashi1); RNA 99.6 3E-16 1E-20 115.0 7.3 75 210-286 1-75 (75)
251 2lmi_A GRSF-1, G-rich sequence 99.6 2.7E-16 9.2E-21 123.7 7.4 81 111-195 7-90 (107)
252 2a3j_A U1 small nuclear ribonu 99.6 8.7E-16 3E-20 123.9 10.6 81 112-197 26-110 (127)
253 1x4f_A Matrin 3; structural ge 99.6 6E-16 2.1E-20 121.1 9.3 80 112-197 22-102 (112)
254 2m2b_A RNA-binding protein 10; 99.6 2E-16 6.7E-21 129.4 6.8 87 204-292 19-111 (131)
255 1x4b_A Heterogeneous nuclear r 99.6 7.5E-16 2.6E-20 123.2 10.0 87 204-292 23-109 (116)
256 2cpy_A RNA-binding protein 12; 99.6 1.8E-16 6.2E-21 126.2 6.4 82 111-196 11-93 (114)
257 2cqg_A TDP-43, TAR DNA-binding 99.6 2.5E-15 8.6E-20 117.4 12.8 87 203-292 10-96 (103)
258 2hgl_A HNRPF protein, heteroge 99.6 2.6E-16 9E-21 128.5 7.4 80 112-195 41-123 (136)
259 2db1_A Heterogeneous nuclear r 99.6 2.6E-16 8.9E-21 126.0 7.3 80 112-195 14-96 (118)
260 1sjr_A Polypyrimidine tract-bi 99.6 9.3E-16 3.2E-20 127.7 10.7 84 113-200 44-127 (164)
261 1wez_A HnRNP H', FTP-3, hetero 99.6 1.1E-15 3.7E-20 118.9 10.3 78 323-402 11-93 (102)
262 2cpx_A Hypothetical protein FL 99.6 1.5E-15 5E-20 121.3 11.4 83 323-405 21-109 (115)
263 2cpi_A CCR4-NOT transcription 99.6 9E-16 3.1E-20 121.6 9.7 86 205-291 12-103 (111)
264 2krb_A Eukaryotic translation 99.6 5.1E-16 1.8E-20 115.5 7.7 69 115-185 1-75 (81)
265 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.1E-16 1.1E-20 121.7 6.8 85 203-290 14-99 (100)
266 2err_A Ataxin-2-binding protei 99.6 1E-15 3.6E-20 120.7 9.9 84 203-289 24-107 (109)
267 1x5o_A RNA binding motif, sing 99.6 2.6E-15 8.8E-20 119.6 12.3 83 205-289 22-112 (114)
268 2dis_A Unnamed protein product 99.6 9.3E-16 3.2E-20 121.2 9.6 85 206-291 6-94 (109)
269 2nlw_A Eukaryotic translation 99.6 1.1E-15 3.8E-20 119.7 9.9 80 323-402 11-101 (105)
270 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.5E-15 1.2E-19 123.6 13.4 83 203-286 58-140 (140)
271 2jwn_A Embryonic polyadenylate 99.6 7.5E-16 2.6E-20 124.8 9.0 78 326-404 35-118 (124)
272 2cq4_A RNA binding motif prote 99.6 7.3E-16 2.5E-20 122.8 8.7 83 206-290 23-105 (114)
273 2lcw_A RNA-binding protein FUS 99.4 2.4E-17 8.2E-22 131.9 0.0 81 324-404 4-98 (116)
274 2dnn_A RNA-binding protein 12; 99.6 3.7E-16 1.3E-20 122.6 6.8 77 113-194 14-90 (109)
275 1fj7_A Nucleolin RBD1, protein 99.6 1.9E-16 6.7E-21 123.3 5.1 82 112-197 14-95 (101)
276 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.5E-16 1.6E-20 114.6 6.7 76 209-286 1-76 (77)
277 2e5g_A U6 snRNA-specific termi 99.6 2.3E-15 7.8E-20 115.4 10.8 79 325-404 6-85 (94)
278 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.3E-21 130.8 3.6 79 323-403 42-125 (139)
279 2e5j_A Methenyltetrahydrofolat 99.6 3.3E-15 1.1E-19 115.3 11.4 80 111-197 15-94 (97)
280 2e44_A Insulin-like growth fac 99.6 1.6E-15 5.6E-20 116.8 9.5 79 324-402 12-93 (96)
281 2ki2_A SS-DNA binding protein 99.6 2.7E-16 9.1E-21 119.7 4.9 81 209-291 2-82 (90)
282 2jwn_A Embryonic polyadenylate 99.6 2.3E-15 7.9E-20 121.9 10.8 84 206-291 34-117 (124)
283 2hgn_A Heterogeneous nuclear r 99.6 2.2E-16 7.5E-21 129.3 4.6 124 158-291 2-125 (139)
284 2diu_A KIAA0430 protein; struc 99.6 1.7E-15 5.7E-20 112.3 8.6 74 327-404 9-87 (96)
285 2nlw_A Eukaryotic translation 99.6 1.8E-15 6.1E-20 118.5 9.5 83 205-290 12-101 (105)
286 2cpj_A Non-POU domain-containi 99.6 2.8E-15 9.7E-20 116.1 10.5 79 111-197 11-89 (99)
287 1iqt_A AUF1, heterogeneous nuc 99.6 3.8E-16 1.3E-20 114.4 5.2 74 117-193 1-74 (75)
288 2fc8_A NCL protein; structure 99.6 4.1E-15 1.4E-19 115.9 11.3 86 203-292 10-95 (102)
289 1fjc_A Nucleolin RBD2, protein 99.6 2.9E-15 9.8E-20 115.4 10.3 82 322-404 11-94 (96)
290 1wg5_A Heterogeneous nuclear r 99.6 2.5E-15 8.5E-20 117.5 9.9 84 205-291 12-96 (104)
291 2hgl_A HNRPF protein, heteroge 99.6 1.3E-15 4.4E-20 124.4 8.6 82 205-289 41-125 (136)
292 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 117.8 9.4 79 207-289 15-93 (109)
293 2cpy_A RNA-binding protein 12; 99.6 1.8E-15 6E-20 120.5 8.6 83 205-290 12-95 (114)
294 2db1_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 121.0 8.8 82 205-289 14-98 (118)
295 2dnq_A RNA-binding protein 4B; 99.6 6.6E-15 2.3E-19 111.9 11.2 79 205-292 5-83 (90)
296 2fc9_A NCL protein; structure 99.6 4.2E-15 1.4E-19 115.6 10.3 83 204-291 11-93 (101)
297 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 116.2 10.0 80 111-200 7-86 (103)
298 2hgm_A HNRPF protein, heteroge 99.6 1.6E-15 5.4E-20 121.8 7.8 79 112-195 39-119 (126)
299 2bz2_A Negative elongation fac 99.6 2.7E-15 9.1E-20 120.4 9.2 79 324-404 36-114 (121)
300 2e5i_A Heterogeneous nuclear r 99.6 7.7E-15 2.6E-19 117.2 11.7 79 115-199 25-104 (124)
301 3q2s_C Cleavage and polyadenyl 99.6 2.2E-15 7.6E-20 135.0 9.6 82 207-289 67-150 (229)
302 1x4c_A Splicing factor, argini 99.6 7.2E-15 2.5E-19 115.7 11.3 79 206-292 13-96 (108)
303 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.8E-20 122.5 6.7 78 113-194 21-102 (123)
304 2krb_A Eukaryotic translation 99.6 1.4E-15 4.9E-20 113.1 6.6 74 208-284 1-81 (81)
305 1fj7_A Nucleolin RBD1, protein 99.6 5.6E-16 1.9E-20 120.6 4.4 85 205-292 14-98 (101)
306 3zzy_A Polypyrimidine tract-bi 99.6 2.6E-15 9E-20 120.3 8.4 83 114-201 27-110 (130)
307 1wel_A RNA-binding protein 12; 99.6 1.7E-15 5.7E-20 122.6 7.2 84 205-290 22-105 (124)
308 2jvr_A Nucleolar protein 3; RN 99.6 3.6E-15 1.2E-19 117.2 8.6 79 206-289 26-105 (111)
309 2lcw_A RNA-binding protein FUS 99.4 1.1E-16 3.9E-21 128.0 0.0 85 112-198 4-96 (116)
310 2la4_A Nuclear and cytoplasmic 99.6 5.1E-15 1.8E-19 115.1 9.4 77 206-289 25-101 (101)
311 2j8a_A Histone-lysine N-methyl 99.6 4.5E-15 1.5E-19 116.4 8.8 82 209-291 3-98 (136)
312 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.6E-20 111.5 5.5 75 210-286 1-75 (75)
313 2dgt_A RNA-binding protein 30; 99.6 1.7E-14 5.8E-19 110.1 11.8 80 204-292 6-85 (92)
314 2f3j_A RNA and export factor b 99.6 5.1E-15 1.7E-19 127.1 9.9 83 111-196 84-166 (177)
315 2ytc_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.6E-19 109.4 10.4 77 204-287 8-85 (85)
316 1x4g_A Nucleolysin TIAR; struc 99.6 9.2E-15 3.2E-19 115.4 10.6 81 205-292 22-102 (109)
317 2xs2_A Deleted in azoospermia- 99.6 9.3E-16 3.2E-20 119.6 4.7 81 112-197 6-86 (102)
318 2cpx_A Hypothetical protein FL 99.6 2.5E-15 8.6E-20 119.9 7.4 87 205-292 22-108 (115)
319 2hzc_A Splicing factor U2AF 65 99.6 3.9E-15 1.3E-19 112.4 8.0 71 326-397 5-86 (87)
320 2kvi_A Nuclear polyadenylated 99.6 8E-15 2.7E-19 112.8 9.8 77 112-198 7-84 (96)
321 2jvo_A Nucleolar protein 3; nu 99.6 1.1E-14 3.7E-19 114.5 10.6 80 203-291 26-105 (108)
322 2e5g_A U6 snRNA-specific termi 99.6 1.4E-14 4.9E-19 110.9 11.0 78 112-197 5-82 (94)
323 2cpd_A Apobec-1 stimulating pr 99.6 2.5E-14 8.7E-19 110.7 12.5 80 203-291 10-91 (99)
324 1wf0_A TDP-43, TAR DNA-binding 99.6 4.2E-15 1.5E-19 112.4 7.7 77 326-404 4-81 (88)
325 2xnq_A Nuclear polyadenylated 99.6 1.8E-14 6.2E-19 110.9 11.1 78 203-289 17-95 (97)
326 2diu_A KIAA0430 protein; struc 99.6 2.5E-14 8.5E-19 106.0 11.1 77 113-201 6-88 (96)
327 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.2E-19 109.9 9.7 77 323-403 7-86 (89)
328 2lmi_A GRSF-1, G-rich sequence 99.6 2.5E-15 8.5E-20 118.2 6.1 84 204-290 7-93 (107)
329 2cq2_A Hypothetical protein LO 99.6 5.8E-15 2E-19 115.5 7.6 77 113-195 23-104 (114)
330 1wf1_A RNA-binding protein RAL 99.6 2.3E-14 8E-19 113.2 11.1 78 205-291 24-102 (110)
331 2dha_A FLJ20171 protein; RRM d 99.6 5.9E-15 2E-19 118.2 7.6 81 206-289 21-105 (123)
332 1nu4_A U1A RNA binding domain; 99.6 7.2E-15 2.5E-19 113.4 7.8 83 205-291 5-91 (97)
333 2e44_A Insulin-like growth fac 99.6 1.4E-14 4.8E-19 111.5 9.4 79 113-197 13-92 (96)
334 1fjc_A Nucleolin RBD2, protein 99.6 8E-15 2.7E-19 112.9 8.0 81 205-291 13-93 (96)
335 2dnl_A Cytoplasmic polyadenyla 99.6 7.4E-15 2.5E-19 116.8 8.0 64 113-177 6-72 (114)
336 2f3j_A RNA and export factor b 99.6 1.3E-14 4.5E-19 124.6 10.0 85 205-291 85-169 (177)
337 2dnp_A RNA-binding protein 14; 99.6 2.2E-14 7.5E-19 108.9 10.1 78 205-291 6-83 (90)
338 3d2w_A TAR DNA-binding protein 99.5 4.7E-15 1.6E-19 112.2 6.2 77 112-197 8-84 (89)
339 2j8a_A Histone-lysine N-methyl 99.5 2.6E-15 8.8E-20 117.8 4.8 75 116-192 3-91 (136)
340 3u1l_A PRE-mRNA-splicing facto 99.5 5.5E-15 1.9E-19 131.6 7.4 82 324-405 131-233 (240)
341 2hgm_A HNRPF protein, heteroge 99.5 7.4E-15 2.5E-19 117.9 7.0 81 205-289 39-121 (126)
342 2xs2_A Deleted in azoospermia- 99.5 6.6E-15 2.3E-19 114.7 6.6 82 206-291 7-88 (102)
343 2cqh_A IGF-II mRNA-binding pro 99.5 1.6E-14 5.4E-19 110.5 8.4 79 206-292 6-86 (93)
344 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.1E-19 114.4 8.3 77 207-290 9-85 (111)
345 3egn_A RNA-binding protein 40; 99.5 1.5E-14 5E-19 120.2 8.6 81 324-404 42-133 (143)
346 1wg1_A KIAA1579 protein, homol 99.5 2.5E-14 8.6E-19 108.1 8.7 76 207-290 4-79 (88)
347 2pe8_A Splicing factor 45; RRM 99.5 5.8E-14 2E-18 109.3 10.3 76 325-400 6-93 (105)
348 1x5p_A Negative elongation fac 99.5 1.8E-13 6E-18 105.5 12.2 79 205-292 12-90 (97)
349 2dit_A HIV TAT specific factor 99.5 2.2E-13 7.7E-18 107.8 12.5 81 323-403 11-104 (112)
350 3egn_A RNA-binding protein 40; 99.5 1.5E-14 5E-19 120.2 5.8 84 205-292 42-133 (143)
351 2pe8_A Splicing factor 45; RRM 99.5 2.2E-13 7.5E-18 106.0 11.4 84 205-289 5-94 (105)
352 3beg_B Splicing factor, argini 99.5 6.3E-14 2.1E-18 111.5 8.2 77 206-290 14-95 (115)
353 2dnl_A Cytoplasmic polyadenyla 99.5 9.3E-14 3.2E-18 110.4 8.3 78 206-287 6-86 (114)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 4.2E-14 1.4E-18 106.9 6.0 78 113-199 3-80 (88)
355 2voo_A Lupus LA protein; RNA-b 99.5 2E-13 7E-18 118.9 11.0 122 166-290 63-188 (193)
356 2hzc_A Splicing factor U2AF 65 99.5 1.7E-13 5.8E-18 103.3 8.5 72 206-285 4-86 (87)
357 2voo_A Lupus LA protein; RNA-b 99.5 6.4E-13 2.2E-17 115.7 13.0 117 260-400 63-186 (193)
358 3v4m_A Splicing factor U2AF 65 99.4 2.7E-13 9.2E-18 105.6 8.8 76 325-400 3-96 (105)
359 2bz2_A Negative elongation fac 99.4 4.9E-13 1.7E-17 107.1 9.7 78 205-291 36-113 (121)
360 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.6E-12 5.4E-17 99.8 11.2 76 327-404 10-93 (100)
361 3ue2_A Poly(U)-binding-splicin 99.4 8.5E-13 2.9E-17 104.7 8.7 75 326-400 19-108 (118)
362 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-12 4E-17 116.6 8.8 80 205-291 131-231 (240)
363 3s6e_A RNA-binding protein 39; 99.4 2.6E-12 8.9E-17 101.1 9.6 75 325-399 5-91 (114)
364 2dit_A HIV TAT specific factor 99.3 6.8E-12 2.3E-16 99.2 11.1 83 204-291 11-104 (112)
365 3tht_A Alkylated DNA repair pr 99.3 1.9E-12 6.5E-17 121.6 8.9 77 323-399 14-97 (345)
366 3v4m_A Splicing factor U2AF 65 99.3 3.1E-12 1.1E-16 99.5 8.7 83 206-289 3-97 (105)
367 3ue2_A Poly(U)-binding-splicin 99.3 5.9E-12 2E-16 99.8 9.3 81 207-288 19-108 (118)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.2E-11 7.6E-16 93.4 11.4 77 113-198 8-91 (100)
369 1jmt_A Splicing factor U2AF 35 99.3 7.3E-13 2.5E-17 103.0 2.8 67 332-398 20-103 (104)
370 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.5E-17 101.0 4.7 72 213-286 20-103 (104)
371 1owx_A Lupus LA protein, SS-B, 99.3 1.5E-11 5.2E-16 96.7 9.9 78 322-399 13-94 (121)
372 3tht_A Alkylated DNA repair pr 99.3 5.6E-12 1.9E-16 118.3 8.1 79 111-195 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 5.6E-11 1.9E-15 87.2 8.9 74 325-401 5-86 (91)
374 3s6e_A RNA-binding protein 39; 99.1 2.5E-10 8.6E-15 89.7 9.4 79 206-289 5-93 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.0 4.7E-10 1.6E-14 82.7 7.3 75 323-400 11-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.9E-09 6.4E-14 84.7 8.6 66 111-182 14-81 (121)
377 2l9w_A U4/U6 snRNA-associated- 98.9 7.5E-09 2.6E-13 77.6 9.1 73 324-396 18-95 (117)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 1.3E-08 4.4E-13 74.7 8.0 73 207-289 6-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.8 1.5E-08 5E-13 90.4 8.8 73 328-400 125-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.6 6.8E-08 2.3E-12 86.0 8.7 68 220-288 141-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 1E-07 3.5E-12 70.3 6.6 73 206-288 13-94 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.4 2.5E-06 8.4E-11 64.1 9.3 74 206-286 19-97 (117)
383 1wey_A Calcipressin 1; structu 98.1 8.7E-06 3E-10 61.1 6.5 76 326-401 4-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.0 5.4E-05 1.8E-09 56.5 10.2 89 113-221 6-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.8 0.00013 4.5E-09 54.4 9.6 75 325-402 6-85 (104)
386 1uw4_A UPF3X; nonsense mediate 97.6 0.0002 6.9E-09 52.8 7.4 67 116-182 2-70 (91)
387 1uw4_A UPF3X; nonsense mediate 97.5 0.00027 9.2E-09 52.1 7.3 72 328-399 2-86 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.5 0.00025 8.4E-09 54.8 7.2 74 324-399 21-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.4 0.0012 4E-08 48.6 8.8 57 113-178 14-70 (100)
390 1wey_A Calcipressin 1; structu 97.2 0.0011 3.7E-08 49.7 7.5 76 207-289 4-84 (104)
391 1whv_A Poly(A)-specific ribonu 97.2 0.0027 9.3E-08 46.7 8.8 56 326-384 15-70 (100)
392 2l08_A Regulator of nonsense t 97.1 0.0013 4.4E-08 48.7 6.8 74 326-399 8-94 (97)
393 2l08_A Regulator of nonsense t 96.7 0.001 3.5E-08 49.3 3.5 69 114-182 8-78 (97)
394 3ctr_A Poly(A)-specific ribonu 96.7 0.0025 8.6E-08 47.0 5.4 53 117-178 8-60 (101)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0027 9.2E-08 46.9 5.5 54 328-384 7-60 (101)
396 3p3d_A Nucleoporin 53; structu 96.7 0.001 3.5E-08 52.0 3.4 71 327-399 7-97 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.2 0.0022 7.5E-08 62.2 3.0 56 114-175 52-107 (464)
398 1wwh_A Nucleoporin 35, nucleop 96.1 0.024 8.2E-07 43.7 8.1 74 206-288 22-96 (119)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0033 1.1E-07 61.0 3.7 54 327-381 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 89.5 0.3 1E-05 38.2 3.6 78 208-288 7-98 (132)
401 3d45_A Poly(A)-specific ribonu 87.6 1.6 5.5E-05 43.1 8.4 56 115-179 440-495 (507)
402 4eyt_A Telomerase associated p 81.8 8.2 0.00028 27.4 7.5 56 326-383 11-66 (129)
403 3d45_A Poly(A)-specific ribonu 81.3 3.6 0.00012 40.6 7.7 55 327-384 440-494 (507)
404 4eyt_A Telomerase associated p 61.1 41 0.0014 23.8 8.2 59 113-179 10-68 (129)
405 2g0c_A ATP-dependent RNA helic 51.9 15 0.0005 25.3 3.7 59 338-399 12-75 (76)
406 2pk2_A Cyclin-T1, protein TAT; 50.9 3.2 0.00011 38.9 0.0 14 337-350 227-240 (358)
407 3fry_A Probable copper-exporti 47.1 33 0.0011 22.9 4.9 56 327-383 6-61 (73)
408 1xn9_A 30S ribosomal protein S 44.4 80 0.0027 23.2 6.7 49 218-267 28-80 (101)
409 1ywx_A 30S ribosomal protein S 37.9 83 0.0028 23.2 5.9 48 218-266 28-79 (102)
410 2v94_A RPS24, 30S ribosomal pr 37.4 88 0.003 23.3 6.0 49 218-267 37-89 (107)
411 4a4j_A Pacszia, cation-transpo 35.6 52 0.0018 21.3 4.4 55 328-382 4-61 (69)
412 3dxs_X Copper-transporting ATP 35.0 85 0.0029 20.6 5.5 56 328-383 4-63 (74)
413 2g1d_A 30S ribosomal protein S 34.8 20 0.00068 26.4 2.1 49 218-267 29-81 (98)
414 4e8u_A Putative uncharacterize 34.2 78 0.0027 25.8 5.7 49 117-168 14-73 (172)
415 2cu1_A Mitogen-activated prote 32.3 1.1E+02 0.0036 22.4 5.4 53 332-386 21-74 (103)
416 3u5c_Y RP50, 40S ribosomal pro 31.9 1.7E+02 0.0057 22.8 6.9 49 218-267 33-85 (135)
417 2xzm_P RPS24E; ribosome, trans 31.7 39 0.0013 26.8 3.4 49 218-267 31-83 (149)
418 2e5p_A Protein PHF1, PHD finge 28.7 30 0.001 23.1 1.9 20 352-373 28-47 (68)
419 2hiy_A Hypothetical protein; C 28.6 68 0.0023 26.5 4.7 116 116-241 7-133 (183)
420 2cpq_A FragIle X mental retard 26.5 1.8E+02 0.0061 20.9 6.4 43 344-387 37-79 (91)
421 4e8u_A Putative uncharacterize 26.4 1.2E+02 0.0043 24.6 5.6 53 328-380 13-80 (172)
422 1yg0_A COP associated protein; 26.3 1.2E+02 0.0041 18.7 5.9 55 329-383 4-61 (66)
423 2xmw_A PACS-N, cation-transpor 24.8 1.3E+02 0.0046 18.8 6.0 56 328-383 5-63 (71)
424 2crl_A Copper chaperone for su 23.5 2E+02 0.0069 20.4 6.9 54 328-382 21-75 (98)
425 2i9x_A Putative septation prot 21.5 1.1E+02 0.0038 21.8 3.9 26 141-166 5-30 (87)
426 1osd_A MERP, hypothetical prot 21.4 1.6E+02 0.0056 18.5 6.5 56 328-383 5-64 (72)
427 1cpz_A Protein (COPZ); copper 21.0 1.6E+02 0.0054 18.2 6.8 44 329-372 3-46 (68)
428 2l3m_A Copper-ION-binding prot 20.8 1.7E+02 0.0057 18.4 5.7 56 328-383 7-66 (71)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.3e-44 Score=339.46 Aligned_cols=241 Identities=19% Similarity=0.312 Sum_probs=218.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..+++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|++..+. ++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR--ERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC--CeEEEEE
Confidence 3678999999999999999999999999 999888 456789999999999999999999999985 4677777
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
++. ..++|||+|||+++|+++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|+
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 643 457999999999999999999995 99999999999999899999999999999999999999999
Q ss_pred CceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCC-CHhHHHhhcccc
Q 013141 273 GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV-SDEDLREPFSQF 351 (449)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~f~~~ 351 (449)
+..+.|+.|.|.++.++... ......++|||+|||.++ ++++|+++|+.|
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~ 209 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAV 209 (284)
T ss_dssp TCEETTEECEEEECCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS
T ss_pred CCEeCCcEEEEEECCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCC
Confidence 99999999999999775432 122457899999999995 999999999999
Q ss_pred CceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 352 GEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 352 G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
|.|.+|.|+++ +++|||+|.+.++|.+|++.|||..|+|+.|+|.|+++...
T Consensus 210 G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 210 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999875 78999999999999999999999999999999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-43 Score=333.59 Aligned_cols=247 Identities=17% Similarity=0.352 Sum_probs=208.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++|+++|+++|+.||.|.+|++++++. .++|||||+|.+.++|.+|+ .+++..+. ++.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~--g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAI-TKTHKVVG--QNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHH-TTTTCEET--TEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHH-HhCCcEeC--CcEE
Confidence 3456789999999999999999999999999999999999864 35799999999999999999 48998884 4667
Q ss_pred cccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 013141 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (449)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 268 (449)
.+.++ ..++|||+|||.++++++|+++|+ .|| .|..+.++.+.. +.++|||||+|.+.++|.+|+
T Consensus 111 ~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 111 IVSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp EEEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred EEEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 76654 467999999999999999999995 999 999999998865 788999999999999999999
Q ss_pred HHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCC-CCHhHHHhh
Q 013141 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREP 347 (449)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~ 347 (449)
+.|++..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRES 231 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHH
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHH
Confidence 999999999999999999876543110 123456789999999999 999999999
Q ss_pred ccccCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 348 FSQFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 348 f~~~G~v~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
|+.||.|.+|.|+++ +|+|||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 232 F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 232 FEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999999763 589999999999999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.3e-33 Score=252.88 Aligned_cols=171 Identities=27% Similarity=0.510 Sum_probs=151.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.+.++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|.+|++.+++..+. ++.+++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~--g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK--GKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC--Ccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999884 4666766
Q ss_pred ccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
++.... ........+|||+|||+++|+++|+++|+ .||.|..+.++++. +.++|||||+|.+.++|.+|++.||
T Consensus 91 ~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 91 WSQRDP---SLRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECCCCT---HHHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccc---cccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 664322 22233456899999999999999999995 99999999999985 4579999999999999999999999
Q ss_pred CceecCcceEEeecCCCCC
Q 013141 273 GVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~ 291 (449)
|..|+|+.|+|.++.++..
T Consensus 165 g~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TCEETTEECEEEECCCHHH
T ss_pred CCEECCEEEEEEEcCCCcc
Confidence 9999999999999987643
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.3e-32 Score=246.39 Aligned_cols=167 Identities=32% Similarity=0.520 Sum_probs=150.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||+++|+++|+++|+ .||+|.+|++++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34668999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC--
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-- 362 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-- 362 (449)
++....... .....+|||+|||+++++++|+++|+.||.|.+|+|+++
T Consensus 91 ~~~~~~~~~------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 91 WSQRDPSLR------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp ECCCCTHHH------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred ccccccccc------------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 987654321 112468999999999999999999999999999999863
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 363 --KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 363 --~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
+|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 141 ~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 141 GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 6899999999999999999999999999999999998753
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4e-32 Score=240.13 Aligned_cols=177 Identities=18% Similarity=0.366 Sum_probs=149.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+||+. ++..+. ++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~--g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD--GRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC--CEEee
Confidence 456789999999999999999999999999999999999999999999999999999999999965 777774 46677
Q ss_pred ccccccCCCCC-ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 013141 191 LNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (449)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 269 (449)
+.++....... .......++|||+|||.++|+++|+++|+ .||.|..+.++.+..++.++|||||+|.+.++|.+|++
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 77765443222 22334568999999999999999999995 99999999999998899999999999999999999997
Q ss_pred HhCCceecCcceEEeecCCCCCC
Q 013141 270 EMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 270 ~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
. ++..|.|+.|.|.++.++...
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 5 899999999999999988654
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-32 Score=232.26 Aligned_cols=166 Identities=31% Similarity=0.604 Sum_probs=151.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
|+|||+|||+++|+++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|.+|++.+++..+. ++.+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIE--NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccC--CCeeEEEEcC
Confidence 689999999999999999999999999999999997 4789999999999999999999999999984 5677777776
Q ss_pred cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
.... ....+.++|||+|||.++++++|+++|+ .||.|..+.++++..++.++|+|||+|.+.++|.+|++.|++..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 4432 3345678999999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred ecCcceEEeecCC
Q 013141 276 CSSRPMRIDVATP 288 (449)
Q Consensus 276 ~~g~~i~v~~~~~ 288 (449)
+.|+.|+|.+++.
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6e-32 Score=242.85 Aligned_cols=176 Identities=20% Similarity=0.392 Sum_probs=154.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+. ++.|++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--GRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--CeeEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999885 4667776
Q ss_pred ccccCCCCCc------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 013141 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
++........ ......++|||+|||.++++++|+++|+ .||.|..+.++++..+++++|+|||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 6543321111 1235668999999999999999999995 99999999999998899999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCCCC
Q 013141 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 267 A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
|++.|++..|.|+.|+|.++.++..
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999988754
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.1e-32 Score=232.42 Aligned_cols=165 Identities=26% Similarity=0.502 Sum_probs=152.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+. ++.+++.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC--CcEEEEEe
Confidence 4689999999999999999999999999999999999989999999999999999999999999999884 56788888
Q ss_pred cccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
+.... .....++|||+|||.++++++|+++|+ .||.|..+.++++..++.++|+|||+|.+.++|.+|++.|++
T Consensus 80 ~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCS-----STTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 76443 234568999999999999999999995 999999999999988899999999999999999999999999
Q ss_pred ceecC--cceEEeec
Q 013141 274 VYCSS--RPMRIDVA 286 (449)
Q Consensus 274 ~~~~g--~~i~v~~~ 286 (449)
..+.| ++|+|+++
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999875
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.4e-31 Score=230.25 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=149.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
+++|||+|||+++++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|.+|++.|++..+. ++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ--TKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC--CceEEEEec
Confidence 689999999999999999999999999999999999989999999999999999999999999999884 567777777
Q ss_pred ccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 013141 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (449)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 274 (449)
.... .....++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|+|.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 234567899999999999999999995 9999999999999888999999999999999999999999999
Q ss_pred eecCcc--eEEeec
Q 013141 275 YCSSRP--MRIDVA 286 (449)
Q Consensus 275 ~~~g~~--i~v~~~ 286 (449)
.+.|+. |+|+|+
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888775
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=3.8e-31 Score=229.37 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=149.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCC--CcccEEEEEEccHHHHHHHHHHhcCCCC-CCCCCccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g--~~~g~afV~f~~~~~A~~Al~~l~~~~~-~~~~~~~~ 190 (449)
+.++|||+|||+++|+++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 8999999999999999999999999765 44577777
Q ss_pred ccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
+.++..... .....++|||+|||.++|+++|+++|+ .||.|.++.++++. ++.++|+|||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654432 233567999999999999999999995 99999999999995 589999999999999999999999
Q ss_pred hCCceec---CcceEEeecC
Q 013141 271 MNGVYCS---SRPMRIDVAT 287 (449)
Q Consensus 271 l~g~~~~---g~~i~v~~~~ 287 (449)
|||..+. +++|+|+|++
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998875 4999999874
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=2.4e-31 Score=235.16 Aligned_cols=173 Identities=23% Similarity=0.406 Sum_probs=146.7
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
......++|||+|||+++|+++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 3445678999999999999999999995 999999999999999999999999999999999999965 89999999999
Q ss_pred EeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC
Q 013141 283 IDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG 362 (449)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~ 362 (449)
|.++....... ........++|||+|||.++++++|+++|+.||.|.+|.++.+
T Consensus 86 v~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 86 PKRAVSREDSQ--------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp EEECCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred eecccCccccc--------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 99987754321 0112345689999999999999999999999999999999864
Q ss_pred ------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 363 ------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 363 ------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
+|+|||+|.+.++|.+|++. ++..|+|+.|.|.|+.++...
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 58999999999999999986 899999999999999987654
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.98 E-value=4.2e-31 Score=227.57 Aligned_cols=159 Identities=25% Similarity=0.479 Sum_probs=147.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
++++|||+|||+++++++|+++|+ .||.|.++.+++++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 568999999999999999999995 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---- 362 (449)
.+... ....++|+|+|||..+++++|+++|+.||.|.++.+.++
T Consensus 81 ~~~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 81 RPGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp CCCSS--------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred CCCcc--------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 76543 234678999999999999999999999999999999875
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEec
Q 013141 363 --KGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWG 398 (449)
Q Consensus 363 --~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~ 398 (449)
+++|||+|.+.++|.+|++.|||..|.| +.|+|+|+
T Consensus 129 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 3899999999999999999999999987 99999986
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=4.3e-31 Score=237.26 Aligned_cols=177 Identities=20% Similarity=0.388 Sum_probs=152.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++|+++|+++|+ .||.|.+|.++++..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3467999999999999999999995 999999999999988899999999999999999999999999999999999998
Q ss_pred cCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC---
Q 013141 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--- 362 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~--- 362 (449)
+............. .......++|||+|||.++++++|+++|+.||.|.+|.|.++
T Consensus 105 ~~~~~~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 163 (216)
T 2qfj_A 105 PSNIGQAQPIIDQL---------------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT 163 (216)
T ss_dssp CSCCGGGHHHHHHH---------------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT
T ss_pred CCCccccchhhhhh---------------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC
Confidence 87654321110000 001234689999999999999999999999999999999875
Q ss_pred ---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 363 ---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 363 ---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
+++|||+|.+.++|.+|++.||+..|+|+.|+|.|++++...
T Consensus 164 g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 164 GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 689999999999999999999999999999999999987544
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-31 Score=225.76 Aligned_cols=160 Identities=28% Similarity=0.562 Sum_probs=146.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
++|||+|||.++|+++|+++|+ .||.|.++.+++++. +.++|+|||+|.+.++|.+|++.|++..+.++.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4899999999999999999995 999999999999864 77999999999999999999999999999999999999876
Q ss_pred CCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------
Q 013141 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------ 362 (449)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------ 362 (449)
.... .....++|||+|||..+++++|+++|+.||.|.++.+..+
T Consensus 79 ~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 79 SQQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp CCCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 5431 2345789999999999999999999999999999999854
Q ss_pred CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 363 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 363 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
+|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++.
T Consensus 129 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 129 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 58999999999999999999999999999999999873
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=5.9e-32 Score=232.72 Aligned_cols=165 Identities=26% Similarity=0.507 Sum_probs=146.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+ .++.+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 578999999999999999999999999999999999998999999999999999999999974 3444 345556655
Q ss_pred cccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
+... ......++|||+|||.++++++|+++|+ .||.|..+.++.++.++.++|+|||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5422 2233567999999999999999999995 99999999999998899999999999999999999997 899
Q ss_pred ceecCcceEEeecCCC
Q 013141 274 VYCSSRPMRIDVATPK 289 (449)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (449)
..+.|+.|+|.++.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999876
No 16
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=7.9e-31 Score=225.51 Aligned_cols=159 Identities=28% Similarity=0.570 Sum_probs=146.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
++++|||+|||+++++++|+++|+ .||.|.++.+++++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 357999999999999999999995 9999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---- 362 (449)
.+.... ...++|+|+|||..+++++|+++|+.||.|.++.+..+
T Consensus 80 ~~~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 127 (167)
T 1fxl_A 80 RPSSAS--------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 127 (167)
T ss_dssp CCCCGG--------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CCCccc--------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC
Confidence 765431 23578999999999999999999999999999999864
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCCeE--EEEEec
Q 013141 363 --KGCGFVQFANRKDAEVALQKLQGTAIGKQT--VRLSWG 398 (449)
Q Consensus 363 --~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--l~v~~~ 398 (449)
+++|||+|.+.++|.+|++.|||..|.|+. |+|+||
T Consensus 128 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 128 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 589999999999999999999999999965 888886
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=4.9e-30 Score=222.36 Aligned_cols=161 Identities=24% Similarity=0.482 Sum_probs=143.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceec---Ccce
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 281 (449)
..++|||+|||+++|+++|+++|+ .||.|.++.++++..++ +++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 467999999999999999999995 99999999999998876 89999999999999999999999998875 6777
Q ss_pred EEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC
Q 013141 282 RIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (449)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~ 361 (449)
.+.++...... ....++|||+|||.++++++|+++|+.||.|.+|.+.+
T Consensus 81 ~~~~~~~~~~~-------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 81 QMKPADSEKNN-------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp EEEECGGGCCS-------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred EEccccccccc-------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 77776554321 23467899999999999999999999999999999987
Q ss_pred C-----CcEEEEEecCHHHHHHHHHHhcCCeeC---CeEEEEEecC
Q 013141 362 G-----KGCGFVQFANRKDAEVALQKLQGTAIG---KQTVRLSWGR 399 (449)
Q Consensus 362 ~-----~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~l~v~~~~ 399 (449)
+ +|+|||+|.+.++|.+|++.|||..+. ++.|+|.|+.
T Consensus 130 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 5 689999999999999999999998776 4999999984
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1e-29 Score=230.12 Aligned_cols=192 Identities=22% Similarity=0.314 Sum_probs=150.5
Q ss_pred ccCCCceEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 204 EACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
...++++|||+|||+ ++++++|+++|+ .||.|.+|.++++. +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345678999999999 999999999995 99999999999874 78999999999999999999999999999999
Q ss_pred EeecCCCCCCchhhcchhhhh---hhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccC-ceEEEE
Q 013141 283 IDVATPKKASGYQQQYSSQAL---VLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVK 358 (449)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~ 358 (449)
|.++................. ........................++|||+|||..+++++|+++|+.|| .|.+|+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 999986532111100000000 0000000000000001112234579999999999999999999999999 999999
Q ss_pred EeC-CCcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEecCCC
Q 013141 359 IPV-GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGRNP 401 (449)
Q Consensus 359 i~~-~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 401 (449)
+.. ++++|||+|.+.++|.+|++.|||..|. |+.|+|+|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 954 7899999999999999999999999999 999999999864
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.2e-29 Score=235.61 Aligned_cols=192 Identities=21% Similarity=0.358 Sum_probs=149.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
..++++|||+|||.++|+++|+ ++|+ .||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4567899999999999999976 8995 999999999886 5788999999999999999999999999999999
Q ss_pred eEEeecCCCCCCchhhcch------------------h-hhhhhc-CCCC-----CCCC---------------------
Q 013141 281 MRIDVATPKKASGYQQQYS------------------S-QALVLA-GGPG-----SNGA--------------------- 314 (449)
Q Consensus 281 i~v~~~~~~~~~~~~~~~~------------------~-~~~~~~-~~~~-----~~~~--------------------- 314 (449)
|+|.++............. . ...... .... ....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999997654210000000 0 000000 0000 0000
Q ss_pred ---------------------------------CcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC
Q 013141 315 ---------------------------------RVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (449)
Q Consensus 315 ---------------------------------~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~ 361 (449)
.............++|||+|||..+++++|+++|+.||.|.+|+|.+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00000112334578999999999999999999999999999999998
Q ss_pred CC-cEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEecCC
Q 013141 362 GK-GCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGRN 400 (449)
Q Consensus 362 ~~-g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~ 400 (449)
++ ++|||+|.+.++|.+|++.|||..|. |+.|+|+|+|.
T Consensus 242 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 76 99999999999999999999999999 99999999873
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2e-29 Score=217.99 Aligned_cols=160 Identities=20% Similarity=0.438 Sum_probs=141.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~ 181 (449)
++.++|||+|||+++|+++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 677777654 4689999999999999999 899998
Q ss_pred CCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCH
Q 013141 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (449)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~ 261 (449)
+. ++.+++.++.... .....++|||+|||.++|+++|+++|+ .||.|..+.+++++.++.++|+|||+|.+.
T Consensus 75 ~~--g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 FQ--GQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp ET--TEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred ec--CceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 84 5677777665332 223478999999999999999999995 999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEEeecC
Q 013141 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (449)
Q Consensus 262 ~~A~~A~~~l~g~~~~g~~i~v~~~~ 287 (449)
++|.+|++.|++..++|+.|+|+++.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999873
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3e-30 Score=222.00 Aligned_cols=159 Identities=25% Similarity=0.482 Sum_probs=144.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
++++|||+|||+++|+++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|.+|++. +..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 467999999999999999999995 999999999999998999999999999999999999974 57899999999887
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---- 362 (449)
.++... ....+|||+|||.++++++|+++|+.||.|.++.+..+
T Consensus 79 ~~~~~~--------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g 126 (167)
T 2cjk_A 79 IPRDEQ--------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 126 (167)
T ss_dssp CCHHHH--------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS
T ss_pred cchhhc--------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC
Confidence 654221 12468999999999999999999999999999999864
Q ss_pred --CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 363 --KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 363 --~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
+|+|||+|.+.++|.+|++ +++..|+|+.|+|.|++++
T Consensus 127 ~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 127 QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999998 8999999999999999875
No 22
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.7e-29 Score=223.56 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=148.4
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 207 SDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 207 ~~~~l~v~~lp~-~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.+++|||+|||+ ++++++|+++|+ .||.|.+|.++++. +|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 357999999999 999999999995 99999999998764 78999999999999999999999999999999999
Q ss_pred cCCCCCCchhhcchhh---hhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccC-ceEEEEEeC
Q 013141 286 ATPKKASGYQQQYSSQ---ALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPV 361 (449)
Q Consensus 286 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~ 361 (449)
+............... ..+.....................+.++|||+|||..+++++|+++|+.|| .|.+|++.+
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 9865322111000000 000000000000000011112234589999999999999999999999999 999999955
Q ss_pred -CCcEEEEEecCHHHHHHHHHHhcCCeeC-CeEEEEEecCCC
Q 013141 362 -GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSWGRNP 401 (449)
Q Consensus 362 -~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~~~~~ 401 (449)
++++|||+|.+.++|.+|++.|||..|+ |+.|+|.|++++
T Consensus 156 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7899999999999999999999999999 999999999864
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=7.5e-30 Score=221.30 Aligned_cols=164 Identities=22% Similarity=0.442 Sum_probs=143.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||.++|+++|+++|. .||.+.. .++.+..++.++|||||+|.+.++|.+|+ +|++..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 345778999999999999999999995 8888766 34445566889999999999999999999 59999999999999
Q ss_pred eecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEe--C
Q 013141 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--V 361 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~--~ 361 (449)
.++..+... .....++|||+|||.++++++|+++|+.||.|..+ .. .
T Consensus 86 ~~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 86 EKPKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp ECCCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred ecCCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 999876432 12346899999999999999999999999999887 22 2
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 362 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 362 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
++++|||+|.+.++|.+|++.|||..|+|+.|+|+|++++
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 4799999999999999999999999999999999999875
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=4.7e-29 Score=220.76 Aligned_cols=169 Identities=20% Similarity=0.405 Sum_probs=144.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~ 181 (449)
..+++|||+|||+++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 5 5566655 345799999999999999999 899998
Q ss_pred CCCCCCcccccccccCCCCC---------------ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCC
Q 013141 182 MPNTDQPFRLNWATFSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (449)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~ 246 (449)
+. ++.+++.++....... .......++|||+|||.++++++|+++|+ .||.|..+.+++++.
T Consensus 75 ~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 FQ--GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSA 151 (198)
T ss_dssp ET--TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTT
T ss_pred Ec--CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCC
Confidence 84 5677777765432111 11225678999999999999999999995 999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCC
Q 013141 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 247 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|.++.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999988754
No 25
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=4.3e-30 Score=222.80 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=143.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|..||.+.. .++.+..+++++|||||+|.+.++|.+|+ .|++..+. ++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF--GNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET--TEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC--CeEEE
Confidence 4467899999999999999999999999998766 34444467889999999999999999999 59999885 57788
Q ss_pred ccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
+.++..... ......++|||+|||.++|+++|+++|+ .||.|..+ ..++.++|+|||+|.+.++|.+|++.
T Consensus 85 v~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 888765432 2334678999999999999999999995 89987665 46788999999999999999999999
Q ss_pred hCCceecCcceEEeecCCC
Q 013141 271 MNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~ 289 (449)
|+|..+.|+.|+|+++.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.1e-28 Score=231.10 Aligned_cols=173 Identities=16% Similarity=0.302 Sum_probs=157.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
..++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+. ++.+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--PRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEEEEE
Confidence 4579999999999999999999999999999999999989999999999999999999999999999884 57888888
Q ss_pred cccCCCCCccccCCCceEEEcCCCCCC-CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~~lp~~~-t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
+...... ......++|||+|||.++ |+++|+++|+ .||.|..+.++++. ++.++|+|||+|.+.++|.+|++.|+
T Consensus 172 a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 8755432 233567899999999995 9999999995 99999999999986 68999999999999999999999999
Q ss_pred CceecCcceEEeecCCCCCC
Q 013141 273 GVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~ 292 (449)
|..+.|+.|+|.++.++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999887664
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4.8e-29 Score=220.70 Aligned_cols=163 Identities=14% Similarity=0.181 Sum_probs=137.3
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
+.++|||+||| +.+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|++|++.||+..+.+ +.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g--~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFG--QKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEE
Confidence 57899999999 899999999999999999999998763 5899999999999999999999999955 667777
Q ss_pred ccccCCCCCc--------------------------------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCe--eE
Q 013141 193 WATFSGSDRR--------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--KG 238 (449)
Q Consensus 193 ~~~~~~~~~~--------------------------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v--~~ 238 (449)
+++....... ....+.++|||+|||+++|+++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 7653221000 0113456899999999999999999995 99999 89
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc----ceEEeec
Q 013141 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (449)
Q Consensus 239 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~i~v~~~ 286 (449)
++++.+. +.++|+|||+|.+.++|.+||..||+..|.++ ++.|+++
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9988774 45679999999999999999999999999776 5666654
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=5.1e-29 Score=220.51 Aligned_cols=186 Identities=17% Similarity=0.193 Sum_probs=140.4
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 207 ~~~~l~v~~lp-~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
++++|||+||+ .++|+++|+++|+ .||.|.+|+++++ .+|||||+|.+.++|++||+.|||..+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 7999999999996 9999999999865 378999999999999999999999999999999999
Q ss_pred cCCCCCCchhhc-chhhh---hhhcCCCCCCCCC-cCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCce--EEEE
Q 013141 286 ATPKKASGYQQQ-YSSQA---LVLAGGPGSNGAR-VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI--LSVK 358 (449)
Q Consensus 286 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v--~~v~ 358 (449)
++.......... ..... ............. ..........+.++|||+|||+++++++|+++|++||.| .+|+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 975432110000 00000 0000000000000 000001123457899999999999999999999999999 8999
Q ss_pred EeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCe----EEEEEec
Q 013141 359 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQ----TVRLSWG 398 (449)
Q Consensus 359 i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~----~l~v~~~ 398 (449)
+..+ +++|||+|.+.++|.+|+..|||..|.|+ .+.|.|+
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8864 48999999999999999999999999886 4666553
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.6e-28 Score=229.76 Aligned_cols=166 Identities=23% Similarity=0.403 Sum_probs=143.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
...++++|||+|||+++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..+.+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC--
Confidence 34678999999999999999977 8999999999999886 57899999999999999999999999998854
Q ss_pred CcccccccccCCCC------------------------------------------------------------------
Q 013141 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (449)
Q Consensus 187 ~~~~~~~~~~~~~~------------------------------------------------------------------ 200 (449)
+.|+|.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 77777777543310
Q ss_pred ----------------------------------------CccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEE
Q 013141 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (449)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~ 240 (449)
......+.++|||+|||.++++++|+++|+ .||.|.+++
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001122467899999999999999999995 999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecC
Q 013141 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (449)
Q Consensus 241 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 287 (449)
++.+. +|+|||+|.+.++|.+|++.|||..|. |+.|+|+|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98653 589999999999999999999999999 9999999985
No 30
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=2.5e-28 Score=216.03 Aligned_cols=177 Identities=15% Similarity=0.335 Sum_probs=143.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~----g-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
..++|||+|||+++|+++|+++|+ .| | .|.++.+ +.++|||||+|.+.++|.+|+ .|++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 467999999999999999999995 88 4 5555554 355899999999999999999 899999
Q ss_pred ecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceE
Q 013141 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~ 355 (449)
+.|+.|+|.++........... ..................++|||+|||..+++++|+++|+.||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSE------------NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSS------------CSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred EcCceEEEeCCCCCCCCCCCcC------------CCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 9999999999877643211000 0000000111122335679999999999999999999999999999
Q ss_pred EEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 356 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 356 ~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
+|.+.++ +++|||+|.+.++|.+|++.|||..|+|+.|+|.|++++..
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999865 68999999999999999999999999999999999998654
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=1.5e-28 Score=212.36 Aligned_cols=153 Identities=18% Similarity=0.440 Sum_probs=137.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~----g-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
+.++|||+|||+++|+++|+++|+ .| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999995 88 6 66666664 34789999999999999999 899999
Q ss_pred ecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceE
Q 013141 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~ 355 (449)
+.|+.|+|.++..... ....++|||+|||..+++++|+++|++||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~--------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp ETTEECEEECCSSCCC--------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ecCceeeecCCcccCC--------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999999998765432 12368899999999999999999999999999
Q ss_pred EEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 356 SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 356 ~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
++.+.++ +|+|||+|.+.++|.+|++.|||..|+|+.|+|+|+.
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999875 5899999999999999999999999999999999973
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.5e-28 Score=219.95 Aligned_cols=165 Identities=16% Similarity=0.289 Sum_probs=142.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 112 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..++++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH--GKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCS--SSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeEC--CeEEE
Confidence 35789999999999 99999999999999999999999875 589999999999999999999999985 46777
Q ss_pred ccccccCCCCCc------------------------------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCC-CeeEE
Q 013141 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (449)
Q Consensus 191 ~~~~~~~~~~~~------------------------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g-~v~~i 239 (449)
+.++........ ....+.++|||+|||.++++++|+++|+ .|| .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 777654311100 1123468999999999999999999995 999 99999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecCCC
Q 013141 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (449)
Q Consensus 240 ~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~~ 289 (449)
.++.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|+|.|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99753 3689999999999999999999999999 999999999764
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.3e-28 Score=231.44 Aligned_cols=171 Identities=13% Similarity=0.297 Sum_probs=145.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..++|||+|||+++++++|+++|+.|| .|.+|.+++++. ++++|||||+|.+.++|.+|++.|++..+.+ +.+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG--YTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT--EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEE
Confidence 578999999999999999999999999 999999999875 8899999999999999999999999999954 778888
Q ss_pred ccccCCCCCc--cccCCCceEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHH
Q 013141 193 WATFSGSDRR--TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (449)
Q Consensus 193 ~~~~~~~~~~--~~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~~g~v~~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~ 268 (449)
++.+...... ......++|||+|||.+ +|+++|+++|+ .||.|..+.++++.. |+.++|+|||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8765543322 24456789999999999 99999999995 999999999999866 6899999999999999999999
Q ss_pred HHhCCceecCcceEEeecCCC
Q 013141 269 TEMNGVYCSSRPMRIDVATPK 289 (449)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~ 289 (449)
.|||..|.|+.|+|.++.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 34
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=4.3e-28 Score=214.57 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=140.8
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+. ++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLH--GKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCS--SCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeec--CeEEEEE
Confidence 368999999999 99999999999999999999998875 589999999999999999999999985 4677777
Q ss_pred ccccCCCCCc------------------------------cccCCCceEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEE
Q 013141 193 WATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKV 241 (449)
Q Consensus 193 ~~~~~~~~~~------------------------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g-~v~~i~~ 241 (449)
++........ ....+.++|||+|||.++++++|+++|+ .|| .|..+.+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEE
Confidence 7654321100 1123478999999999999999999995 999 9999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecCCC
Q 013141 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (449)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~~ 289 (449)
+.+ .+|+|||+|.+.++|.+|++.|+|..+. |+.|+|.|+++.
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 764 2789999999999999999999999999 999999998764
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.3e-27 Score=220.54 Aligned_cols=159 Identities=26% Similarity=0.510 Sum_probs=142.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++.+++..+. ++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILK--SRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEEC--CceeE
Confidence 3456789999999999999999999999999999999654 589999999999999999999999984 57788
Q ss_pred ccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 013141 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (449)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 270 (449)
+.++. +..+|||+|||.++|+++|+++|+ .||.|..+.++.+ .++.++|+|||+|.+.++|.+|++.
T Consensus 90 v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 87775 357999999999999999999995 9999999999999 5799999999999999999999999
Q ss_pred hCC-ceec---CcceEEeecCCCC
Q 013141 271 MNG-VYCS---SRPMRIDVATPKK 290 (449)
Q Consensus 271 l~g-~~~~---g~~i~v~~~~~~~ 290 (449)
|++ ..+. +++|.|.++....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 954 4444 9999999998754
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.3e-26 Score=213.97 Aligned_cols=155 Identities=30% Similarity=0.464 Sum_probs=139.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||+++|+++|+++|+ .||.|..|.+.++ +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 345668999999999999999999995 9999999998643 789999999999999999999999999999999
Q ss_pred eecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-
Q 013141 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (449)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~- 362 (449)
.++.+ ..+|||+|||..+|+++|+++|+.||.|.+|.|+.+
T Consensus 91 ~~a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 91 RFATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EECCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred eeccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 99854 357999999999999999999999999999999864
Q ss_pred ----CcEEEEEecCHHHHHHHHHHhc-CCeeC---CeEEEEEecCCCCC
Q 013141 363 ----KGCGFVQFANRKDAEVALQKLQ-GTAIG---KQTVRLSWGRNPGN 403 (449)
Q Consensus 363 ----~g~afV~F~~~~~A~~A~~~l~-g~~~~---g~~l~v~~~~~~~~ 403 (449)
+|+|||+|.+.++|.+|++.|| +..+. ++.|+|.+++....
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 7899999999999999999994 55554 99999999987543
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=5.7e-22 Score=168.39 Aligned_cols=146 Identities=23% Similarity=0.324 Sum_probs=115.5
Q ss_pred EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC-----Ccccccccc-cCCCCCccccCCCceEEEcCCC
Q 013141 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD-----QPFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (449)
Q Consensus 144 ~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~l~v~~lp 217 (449)
+++++.+.. +++||+||+|.+.++|++|++.+++....... ......... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567888754 68999999999999999999887753321111 111111111 1111122334557899999999
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCC
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
+++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|.++.+....
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999995 9999999999999889999999999999999999999999999999999999999887543
No 38
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.2e-21 Score=164.84 Aligned_cols=138 Identities=20% Similarity=0.263 Sum_probs=115.2
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCC
Q 013141 248 GRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326 (449)
Q Consensus 248 ~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (449)
...+|+++|+|.+.++|++|++.+ |+..++| .+.+.++..+....... ..............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----------------~~~~~~~~~~~~~~ 72 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----------------HHHHHHMHRDSCPL 72 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----------------SSCCCCSCSSSSTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----------------ccccccccccCCCC
Confidence 456899999999999999999999 9999999 99999876543211000 00011112334556
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.++|||+|||+.+++++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.|||..|.|+.|+|+|++++.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 799999999999999999999999999999999987 8999999999999999999999999999999999998864
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=4.7e-21 Score=162.69 Aligned_cols=146 Identities=20% Similarity=0.273 Sum_probs=109.1
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcC
Q 013141 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQ 317 (449)
Q Consensus 238 ~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (449)
.+.++.+.. .++||+||+|.+.++|++|++.+++....+..+.+........... ....
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 60 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------------------GSHH 60 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------------------CCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------------------cccc
Confidence 355666643 6899999999999999999988876433333333222211100000 0000
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 013141 318 GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQ 391 (449)
Q Consensus 318 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 391 (449)
..........++|||+|||+++++++|+++|+.||.|.+|.|+++ +|+|||+|.+.++|.+|++.|||..|.|+
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 011223455789999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred EEEEEecCCCCCC
Q 013141 392 TVRLSWGRNPGNK 404 (449)
Q Consensus 392 ~l~v~~~~~~~~~ 404 (449)
.|+|.|+++...+
T Consensus 141 ~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 141 ELRVQMARYGRPP 153 (158)
T ss_dssp EEEEEEECCSSCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999986544
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.7e-21 Score=153.79 Aligned_cols=107 Identities=24% Similarity=0.422 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
.+.+|||+|||+++++++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|++||+.|++..+. ++.|+|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~--g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC--CEEEEEEE
Confidence 46789999999999999999999999999999999986 468999999999999999999999999985 46788888
Q ss_pred cccCCCCCc---cccCCCceEEEcCCCCCCCHHH
Q 013141 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (449)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~l~v~~lp~~~t~~~ 224 (449)
+........ ......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 765433221 2233456799999999999864
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.4e-20 Score=146.56 Aligned_cols=110 Identities=22% Similarity=0.436 Sum_probs=75.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
...+|||+|||+++|+++|+++|+ .||.|.+++++++. +.++|||||+|.+.++|++||+.|++..|.|+.|+|.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356899999999999999999995 99999999999985 457999999999999999999999999999999999999
Q ss_pred CCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhH
Q 013141 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED 343 (449)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 343 (449)
.++..+.... .......++|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAEL------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------------------------------
T ss_pred CCcccccccc------------------------ccccCCCCceEeCCCCCCccccc
Confidence 8765432110 11122345799999999999864
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=5.9e-20 Score=154.39 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=110.5
Q ss_pred CCcccEEEEEEccHHHHHHHHHHh-cCCCCCCCCCcccccccccCC-----------CCCccccCCCceEEEcCCCCCCC
Q 013141 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (449)
Q Consensus 154 g~~~g~afV~f~~~~~A~~Al~~l-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~v~~lp~~~t 221 (449)
.+.+|+++|+|.+.++|++|++.+ ++..+.+ .++++++.... ..........++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9998866 67777665321 12233456678999999999999
Q ss_pred HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 013141 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 222 ~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 290 (449)
+++|+++|+ .||.|.++.++++ ++|||||+|.+.++|.+|++.|++..|.|+.|+|+++.++.
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999996 9999999999876 58899999999999999999999999999999999998763
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=139.74 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++|+++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.||+..+. ++.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ--SKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC--CEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999995 5788888
Q ss_pred cccc
Q 013141 193 WATF 196 (449)
Q Consensus 193 ~~~~ 196 (449)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8864
No 44
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=146.54 Aligned_cols=87 Identities=24% Similarity=0.424 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999985 57788
Q ss_pred ccccccCCC
Q 013141 191 LNWATFSGS 199 (449)
Q Consensus 191 ~~~~~~~~~ 199 (449)
|.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 888875543
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=135.96 Aligned_cols=82 Identities=29% Similarity=0.527 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||+++|+++|+++|+ .||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 013141 286 ATP 288 (449)
Q Consensus 286 ~~~ 288 (449)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=6.7e-19 Score=148.91 Aligned_cols=82 Identities=27% Similarity=0.491 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+||+.||+..|.|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999764 47999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++.....
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99765443
No 47
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=132.00 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCe--eCCeEEEEEecCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA--IGKQTVRLSWGRN 400 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~~~~ 400 (449)
..+++++|||+|||+++|+++|+++|++||.|.+|.++++|++|||+|.+.++|.+|++.|++.. |.|+.|+|.|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34568899999999999999999999999999999999999999999999999999999999875 7899999999987
Q ss_pred C
Q 013141 401 P 401 (449)
Q Consensus 401 ~ 401 (449)
.
T Consensus 97 k 97 (100)
T 3r27_A 97 Q 97 (100)
T ss_dssp S
T ss_pred c
Confidence 5
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=134.18 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEecCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWGRN 400 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~~ 400 (449)
.....++|||+|||+++++++|+++|++||.|.+|.|++++|+|||+|++.++|.+|++.|+ +..|.|+.|+|.|++.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 34567899999999999999999999999999999999999999999999999999999886 4789999999999987
Q ss_pred CCCC
Q 013141 401 PGNK 404 (449)
Q Consensus 401 ~~~~ 404 (449)
+...
T Consensus 92 ~~~~ 95 (105)
T 1sjq_A 92 KELK 95 (105)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6544
No 49
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=5.6e-18 Score=132.56 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
....++|||+|||.++++++|+++|+.||.|.+|.++ +++|||+|.+.++|.+|++.||+..|.|+.|+|.|+++...
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4457899999999999999999999999999999998 56999999999999999999999999999999999998765
Q ss_pred CCC
Q 013141 404 KQW 406 (449)
Q Consensus 404 ~~~ 406 (449)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 543
No 50
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=5.5e-19 Score=173.35 Aligned_cols=82 Identities=23% Similarity=0.493 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999864 699999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013141 399 RNPGNKQW 406 (449)
Q Consensus 399 ~~~~~~~~ 406 (449)
+.......
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 97655443
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=129.46 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh--cCCeeCCeEEEEEecC
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL--QGTAIGKQTVRLSWGR 399 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~l~v~~~~ 399 (449)
....+.++|||+|||+++++++|+++|++||.|.+|.+++++++|||+|.+.++|.+|++.| ++..|.|+.|+|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 34456789999999999999999999999999999999999999999999999999999987 4678999999999999
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
...-.
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76544
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=131.92 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCC-CCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCC--eeCCeEEEEEecCC
Q 013141 324 ESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSWGRN 400 (449)
Q Consensus 324 ~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~~ 400 (449)
..++++|||+|||+ ++++++|+++|++||.|.+|.|++++++|||+|.+.++|.+|++.||+. .|.|+.|+|.|++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 34688999999999 9999999999999999999999999999999999999999999999864 59999999999996
Q ss_pred CC
Q 013141 401 PG 402 (449)
Q Consensus 401 ~~ 402 (449)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.7e-18 Score=126.09 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
.+..|+|+||++.+|+++|+++|.+||+|.++++..++|+|||+|.|.++|.+|++.||+..+.|+.|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999985
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=131.47 Aligned_cols=81 Identities=20% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCC-----eEEEEEec
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-----QTVRLSWG 398 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~l~v~~~ 398 (449)
....++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|.+.++|.+||+.||+..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 355789999999999999999999999999999999987 999999999999999999999999999 99999999
Q ss_pred CCCCCCC
Q 013141 399 RNPGNKQ 405 (449)
Q Consensus 399 ~~~~~~~ 405 (449)
+++....
T Consensus 91 ~~~~~~~ 97 (108)
T 1x4c_A 91 GPRSPSY 97 (108)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 9876553
No 55
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=135.34 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.||+..+. ++.|+|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~--gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM--GNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC--CeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999995 4667777
Q ss_pred ccc
Q 013141 193 WAT 195 (449)
Q Consensus 193 ~~~ 195 (449)
++.
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 664
No 56
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=130.45 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCC--eeCCeEEEEEecCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSWGRN 400 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~~~~ 400 (449)
...+.++|||+|||+++++++|+++|++||.|.+|.+++++++|||+|.+.++|.+|++.|++. .|.|+.|+|.|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 3456789999999999999999999999999999999999999999999999999999998765 59999999999997
Q ss_pred CCCC
Q 013141 401 PGNK 404 (449)
Q Consensus 401 ~~~~ 404 (449)
....
T Consensus 91 ~~~~ 94 (104)
T 1wex_A 91 KRIT 94 (104)
T ss_dssp SSCC
T ss_pred cccc
Confidence 6543
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=132.54 Aligned_cols=84 Identities=12% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.+.++|||+||++++++++|+++|+ .||.|.++.+++|+.+++++|||||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4568999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013141 286 ATPKK 290 (449)
Q Consensus 286 ~~~~~ 290 (449)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97654
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.3e-18 Score=142.90 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=83.7
Q ss_pred EEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE
Q 013141 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG 238 (449)
Q Consensus 159 ~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~ 238 (449)
+.|++|.+...+..|++.+++....+... ..+ ..........++|||+|||.++|+++|+++|+ .||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGD 76 (135)
T ss_dssp --------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC---CCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEE
Confidence 67888888889999998888765543321 111 12233445678999999999999999999995 9999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCC
Q 013141 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 239 i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
|.++.++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|+++++....
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999889999999999999999999999999999999999999999887553
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-17 Score=130.38 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.......++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344556789999999999999999999999999999999864 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 398 GRNPGNK 404 (449)
Q Consensus 398 ~~~~~~~ 404 (449)
+++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9986543
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=138.60 Aligned_cols=83 Identities=25% Similarity=0.436 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||.++++++|+++|+.||.|.+|+|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999864 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|+++...+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999987544
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-17 Score=127.96 Aligned_cols=85 Identities=34% Similarity=0.522 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344566899999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 013141 397 WGRNPGNKQ 405 (449)
Q Consensus 397 ~~~~~~~~~ 405 (449)
|+++.....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999876553
No 62
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=133.04 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC--cEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC--CCCCCC
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL--MPNTDQ 187 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~--~~~~~~ 187 (449)
...-.||||+|||+++|+++|+++|++||. |.+|++++|+.+++++|||||+|.+.++|.+|++.|++.. +...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456789999999999999999999999994 7799999999999999999999999999999999999974 223567
Q ss_pred cccccccc
Q 013141 188 PFRLNWAT 195 (449)
Q Consensus 188 ~~~~~~~~ 195 (449)
.|+|+|++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 88888876
No 63
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=132.37 Aligned_cols=83 Identities=14% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc--CCeeCCeEEEEEecC
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSWGR 399 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~~~ 399 (449)
....++++|||+|||+++++++|+++|++||.|.+|.|++++++|||+|++.++|.+|++.|+ +..|.|+.|+|.|++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 344567899999999999999999999999999999999999999999999999999999987 468999999999998
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
...-.
T Consensus 106 ~k~~~ 110 (119)
T 2ad9_A 106 HKELK 110 (119)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 64
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=7.5e-19 Score=133.92 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcC-CCCCCCCCccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPFRLN 192 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~-~~~~~~~~~~~~~ 192 (449)
+++|||+|||+++|+++|+++|+.|| .|.+|++++++.+++++|||||+|.+.++|.+|++.+++ ..+ .++.|+|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 57999999999999999999999999 899999999999999999999999999999999987644 456 45788888
Q ss_pred ccccCC
Q 013141 193 WATFSG 198 (449)
Q Consensus 193 ~~~~~~ 198 (449)
++.+..
T Consensus 79 ~a~~~~ 84 (91)
T 2lxi_A 79 YSDPKP 84 (91)
T ss_dssp CCCSCC
T ss_pred EcCCCC
Confidence 887543
No 65
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=128.75 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeC--CeEEEEEecCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSWGRN 400 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~~~~~ 400 (449)
.....++|||+|||..+++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|++.||+..|. |+.|+|+|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3455789999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred CCC
Q 013141 401 PGN 403 (449)
Q Consensus 401 ~~~ 403 (449)
+..
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 66
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=128.27 Aligned_cols=81 Identities=26% Similarity=0.512 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.+.+++++|||+|.+.++|.+|++.||+..|.|+.|+|.|+++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q 013141 403 N 403 (449)
Q Consensus 403 ~ 403 (449)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=130.96 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=77.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCcceEEee
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPMRIDV 285 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~ 285 (449)
+++|||+|||+++|+++|+++|+ .|| .|.+|++++++.++.++|||||+|.+.++|.+|++.++ +..+.|+.|+|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999995 999 89999999999999999999999999999999998874 5679999999999
Q ss_pred cCCCCCC
Q 013141 286 ATPKKAS 292 (449)
Q Consensus 286 ~~~~~~~ 292 (449)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887543
No 68
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.3e-17 Score=131.85 Aligned_cols=89 Identities=27% Similarity=0.542 Sum_probs=80.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++++++|+++|..||.|.+|+|++++.+++++|||||+|.+.++|++|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--TEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999885 4788
Q ss_pred cccccccCCCC
Q 013141 190 RLNWATFSGSD 200 (449)
Q Consensus 190 ~~~~~~~~~~~ 200 (449)
+|.|+......
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 88888765443
No 69
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=126.21 Aligned_cols=79 Identities=24% Similarity=0.504 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
....++|||+|||.++++++|+++|+.||.|.+|.+. +++|||+|.+.++|.+|++.||+..|.|+.|+|+|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4567899999999999999999999999999999998 78999999999999999999999999999999999998755
Q ss_pred C
Q 013141 404 K 404 (449)
Q Consensus 404 ~ 404 (449)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=130.13 Aligned_cols=87 Identities=30% Similarity=0.515 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--GKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS--SCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC--CeEEE
Confidence 4467899999999999999999999999999999999999989999999999999999999999999999985 57788
Q ss_pred ccccccCCC
Q 013141 191 LNWATFSGS 199 (449)
Q Consensus 191 ~~~~~~~~~ 199 (449)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 888875543
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.8e-17 Score=132.40 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC--CEEEE
Confidence 4457789999999999999999999999999999999999989999999999999999999999999999984 57888
Q ss_pred ccccccCCCC
Q 013141 191 LNWATFSGSD 200 (449)
Q Consensus 191 ~~~~~~~~~~ 200 (449)
|.|+......
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 8888765443
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=127.98 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
....++|||+|||.++++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999864 48999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++.....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99876553
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=129.37 Aligned_cols=88 Identities=25% Similarity=0.455 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--GRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT--SCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CeEEE
Confidence 3457899999999999999999999999999999999999989999999999999999999999999999984 57788
Q ss_pred ccccccCCCC
Q 013141 191 LNWATFSGSD 200 (449)
Q Consensus 191 ~~~~~~~~~~ 200 (449)
|.++......
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 8888765443
No 74
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=126.55 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
...++|||+|||.++++++|+++|+.||.|.+|.+.++ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999874 579999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
+++..+
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 986543
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=127.30 Aligned_cols=86 Identities=20% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+. ++.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC--CeEEE
Confidence 34578999999999999999999999999999999999999899999999999999999999998 9999884 57788
Q ss_pred ccccccCCC
Q 013141 191 LNWATFSGS 199 (449)
Q Consensus 191 ~~~~~~~~~ 199 (449)
|.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888875543
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=127.23 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
......++|||+|||..+++++|+++|+.||.|.+|.|++ ++++|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3455679999999999999999999999999999999987 368999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 398 GRNPGNK 404 (449)
Q Consensus 398 ~~~~~~~ 404 (449)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9986544
No 77
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=128.44 Aligned_cols=84 Identities=29% Similarity=0.522 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
......++|||+|||+.+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34457889999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++...+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 99876543
No 78
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-17 Score=124.96 Aligned_cols=80 Identities=19% Similarity=0.402 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.+. +++|||+|.+.++|.+|++.||+..|.|+.|+|+|++++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 45567999999999999999999999999999999998 4599999999999999999999999999999999999865
Q ss_pred CC
Q 013141 403 NK 404 (449)
Q Consensus 403 ~~ 404 (449)
..
T Consensus 84 ~~ 85 (92)
T 2dgt_A 84 RT 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=7.4e-17 Score=128.89 Aligned_cols=84 Identities=33% Similarity=0.648 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456889999999999999999999999999999999875 589999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 013141 396 SWGRNPGNKQ 405 (449)
Q Consensus 396 ~~~~~~~~~~ 405 (449)
.|+++.....
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876543
No 80
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=130.00 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
...+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD--GRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--TBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999985 57788
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88887543
No 81
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=4.8e-17 Score=127.75 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCC-CCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~-~~~~~ 189 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.|+.++ +++++|||||+|.+.++|++|++.|++..+.+ ..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34578999999999999999999999999999999999997 79999999999999999999999999998753 33788
Q ss_pred cccccccCCC
Q 013141 190 RLNWATFSGS 199 (449)
Q Consensus 190 ~~~~~~~~~~ 199 (449)
+|.++.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9988876543
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.5e-17 Score=141.88 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=80.6
Q ss_pred EEEccHHHHHHHHHHhcCCCCCCCCCcccccccccC---------------CCCCccccCCCceEEEcCCCCCCCHHHHH
Q 013141 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---------------GSDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (449)
Q Consensus 162 V~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~v~~lp~~~t~~~l~ 226 (449)
.+|.+.++|+.|+..+++......++..+..+.... ....+....+.++|||+|||+++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 789999999999999888776545555554442211 11112334556789999999999999999
Q ss_pred HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCC
Q 013141 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 227 ~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 292 (449)
++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.++..+...
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 9995 9999999999999999999999999999999999999999999999999999999876543
No 83
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.2e-17 Score=129.94 Aligned_cols=88 Identities=20% Similarity=0.428 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC-CCCCCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~~ 189 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++.. +.+.++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999976 45567889
Q ss_pred cccccccCC
Q 013141 190 RLNWATFSG 198 (449)
Q Consensus 190 ~~~~~~~~~ 198 (449)
+|.++....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 998887554
No 84
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=129.28 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCC-CCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcC--CeeCCeEEEEEecCC
Q 013141 324 ESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG--TAIGKQTVRLSWGRN 400 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~~~~ 400 (449)
..++++|||+|||++ +++++|+++|++||.|.+|.|++++++|||+|.+.++|.+|++.|++ ..|.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred CCCC
Q 013141 401 PGNK 404 (449)
Q Consensus 401 ~~~~ 404 (449)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6543
No 85
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=126.17 Aligned_cols=82 Identities=29% Similarity=0.606 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 46789999999999999999999999999999999999889999999999999999999999999999884 4778888
Q ss_pred cccc
Q 013141 193 WATF 196 (449)
Q Consensus 193 ~~~~ 196 (449)
|+..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 7764
No 86
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=129.23 Aligned_cols=80 Identities=20% Similarity=0.408 Sum_probs=74.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCcce
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSRPM 281 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~--v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~~i 281 (449)
=++|||+|||+++|+++|+++|+ .||. |.+|++++|+.+++++|||||+|.+.++|.+|++.||+. .|+|+.|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 35899999999999999999995 9995 679999999999999999999999999999999999986 5899999
Q ss_pred EEeecCC
Q 013141 282 RIDVATP 288 (449)
Q Consensus 282 ~v~~~~~ 288 (449)
.|++++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-17 Score=129.31 Aligned_cols=83 Identities=28% Similarity=0.422 Sum_probs=74.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 394 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 394 (449)
.......++|||+|||..+++++|+++|+.||.|.+|+|+++ +++|||+|.+.++|.+|++.|++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344567899999999999999999999999999999999874 58999999999999999999998 89999999
Q ss_pred EEecCCCCCC
Q 013141 395 LSWGRNPGNK 404 (449)
Q Consensus 395 v~~~~~~~~~ 404 (449)
|+|++.....
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999875443
No 88
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=129.55 Aligned_cols=81 Identities=30% Similarity=0.642 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
....++|||+|||..+++++|+++|+.||.|.+|.|++++++|||+|.+.++|.+|++.||+..|.|+.|+|.|+++...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 013141 404 K 404 (449)
Q Consensus 404 ~ 404 (449)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=127.93 Aligned_cols=86 Identities=43% Similarity=0.797 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcE-EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc--
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP-- 188 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~-- 188 (449)
....++|||+|||+++++++|+++|+.||.|. +|++++++.+++++|||||+|.+.++|++|++.|++..+.++...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 999999999999999999999999999999999999998665422
Q ss_pred ccccccccC
Q 013141 189 FRLNWATFS 197 (449)
Q Consensus 189 ~~~~~~~~~ 197 (449)
+++.|+...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 888888654
No 90
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=127.84 Aligned_cols=86 Identities=23% Similarity=0.505 Sum_probs=78.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++.|++..+. ++.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--GRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS--SSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999885 5778
Q ss_pred cccccccC
Q 013141 190 RLNWATFS 197 (449)
Q Consensus 190 ~~~~~~~~ 197 (449)
+|.++...
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 88777643
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=127.46 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
....+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999884 5777
Q ss_pred cccccc
Q 013141 190 RLNWAT 195 (449)
Q Consensus 190 ~~~~~~ 195 (449)
+|.+++
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 877765
No 92
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=127.55 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--GRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET--TEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 3457889999999999999999999999999999999999989999999999999999999999999999884 57777
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77653
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=2.8e-17 Score=133.73 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=78.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
....+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++||+.|++..+. ++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--SSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999885 5778
Q ss_pred cccccccC
Q 013141 190 RLNWATFS 197 (449)
Q Consensus 190 ~~~~~~~~ 197 (449)
+|.|+...
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 88887643
No 94
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.1e-17 Score=132.73 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..+. ++.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999999999885 4667
Q ss_pred ccccc
Q 013141 190 RLNWA 194 (449)
Q Consensus 190 ~~~~~ 194 (449)
+|.|+
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 77665
No 95
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.7e-17 Score=126.81 Aligned_cols=87 Identities=25% Similarity=0.450 Sum_probs=78.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc
Q 013141 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (449)
.......++|||+|||+++++++|+++|+.||.|.+|.++.+ +++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 84 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKP 84 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSB
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 344568899999999999999999999999999999999998 799999999999999999999999999998 4578
Q ss_pred ccccccccCCC
Q 013141 189 FRLNWATFSGS 199 (449)
Q Consensus 189 ~~~~~~~~~~~ 199 (449)
|+|.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 88888875543
No 96
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=126.53 Aligned_cols=82 Identities=17% Similarity=0.392 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (449)
.....++|||+|||+++++++|+++|+.||.|.+ |+++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4467899999999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred CCCCCccccccc
Q 013141 183 PNTDQPFRLNWA 194 (449)
Q Consensus 183 ~~~~~~~~~~~~ 194 (449)
. ++.|+|.++
T Consensus 89 ~--g~~l~V~~A 98 (99)
T 2la6_A 89 S--GNPIKVSFA 98 (99)
T ss_dssp S--SSBCEEEEC
T ss_pred C--CcEEEEEec
Confidence 5 467777765
No 97
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=8.6e-18 Score=127.93 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=69.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
.+|||+|||+++++++|+++|+.|| .|.+|+++.++.+|+++|||||+|.+.++|++|++.|++..+. ++.|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~--gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS--SCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC--CEEEEEEE
Confidence 4799999999999999999999999 9999999999999999999999999999999999999999995 46777777
Q ss_pred cccC
Q 013141 194 ATFS 197 (449)
Q Consensus 194 ~~~~ 197 (449)
+.+.
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 7644
No 98
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=127.90 Aligned_cols=87 Identities=21% Similarity=0.431 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEec-CCCCCcccEEEEEEccHHHHHHHHHHh-cCCCCCCCCCc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQP 188 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l-~~~~~~~~~~~ 188 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++++ +.+++++|||||+|.+.++|.+|++.| ++..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--GRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--CCE
Confidence 4567899999999999999999999999999999999999 788999999999999999999999999 899885 578
Q ss_pred ccccccccCCC
Q 013141 189 FRLNWATFSGS 199 (449)
Q Consensus 189 ~~~~~~~~~~~ 199 (449)
|+|.|+.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 88888875543
No 99
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=5.8e-17 Score=129.48 Aligned_cols=83 Identities=28% Similarity=0.524 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||.++++++|+++|+.||.|.+|+|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999864 379999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
+|+++...+
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999987554
No 100
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-17 Score=128.25 Aligned_cols=83 Identities=28% Similarity=0.544 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHh-cCCeeCCeEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKL-QGTAIGKQTV 393 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l 393 (449)
......++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|++.| |+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34566899999999999999999999999999999999876 699999999999999999999 9999999999
Q ss_pred EEEecCCCCCC
Q 013141 394 RLSWGRNPGNK 404 (449)
Q Consensus 394 ~v~~~~~~~~~ 404 (449)
+|+|+++....
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999987554
No 101
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-17 Score=126.37 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3556799999999999999999999999999999999864 4799999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 013141 397 WGRNPGNKQ 405 (449)
Q Consensus 397 ~~~~~~~~~ 405 (449)
|+++...+.
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 999876543
No 102
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=130.49 Aligned_cols=81 Identities=21% Similarity=0.498 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
....++|||+|||.++++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.|||..|.|+.|+|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999875 499999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 986543
No 103
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-17 Score=124.75 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhcccc--CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
.......++|||+|||..+++++|+++|+.| |.|.+|.+. +++|||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3445567899999999999999999999999 999999887 679999999999999999999999999999999999
Q ss_pred CCCCC
Q 013141 399 RNPGN 403 (449)
Q Consensus 399 ~~~~~ 403 (449)
++...
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 104
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=127.55 Aligned_cols=81 Identities=30% Similarity=0.565 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEE-EEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
...++|||+|||..+++++|+++|+.||.|.+| .|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 88764 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++...+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876543
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=136.32 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=77.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEE--EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCC----CCC
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMP 183 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~----~~~ 183 (449)
......++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|++. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~- 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI- 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC-
Confidence 34467889999999999999999999999999976 99999999999999999999999 999999999998 66
Q ss_pred CCCCcccccccccCC
Q 013141 184 NTDQPFRLNWATFSG 198 (449)
Q Consensus 184 ~~~~~~~~~~~~~~~ 198 (449)
.++.|+|.++....
T Consensus 96 -~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 -DGKTINVEFAKGSK 109 (131)
T ss_dssp -GGCCCCCEECCCSC
T ss_pred -CCEEEEEEECCCCC
Confidence 45778888887543
No 106
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=1.6e-17 Score=125.08 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
..+.++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|.+|++.|++..+. ++.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEE
Confidence 357899999999999999999999999999999999999889999999999999999999999999999984 567777
Q ss_pred cccc
Q 013141 192 NWAT 195 (449)
Q Consensus 192 ~~~~ 195 (449)
.|++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7653
No 107
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7e-17 Score=125.56 Aligned_cols=84 Identities=18% Similarity=0.381 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
.......++|||+|||..+++++|+++|+.||.|.+|.|..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334566789999999999999999999999999999999874 489999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|++++..+
T Consensus 91 ~~a~~~~~~ 99 (100)
T 2do4_A 91 AISNSGPSS 99 (100)
T ss_dssp EECCCCSCC
T ss_pred EECCCCCCC
Confidence 999987543
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=2.5e-17 Score=123.40 Aligned_cols=81 Identities=35% Similarity=0.591 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
+.+|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.+++.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC--CcEEEEEec
Confidence 468999999999999999999999999999999999889999999999999999999999999999984 578888887
Q ss_pred ccC
Q 013141 195 TFS 197 (449)
Q Consensus 195 ~~~ 197 (449)
...
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
No 109
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=6.3e-17 Score=121.19 Aligned_cols=81 Identities=37% Similarity=0.705 Sum_probs=77.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
.+|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+|+++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999995 999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 013141 289 KK 290 (449)
Q Consensus 289 ~~ 290 (449)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 110
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=123.23 Aligned_cols=83 Identities=35% Similarity=0.675 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.+.++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567999999999999999999995 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013141 286 ATPK 289 (449)
Q Consensus 286 ~~~~ 289 (449)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9765
No 111
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=125.68 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHhHHH----hhccccCceEEEEEeCC---CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
....++|||+|||+.+++++|+ ++|++||.|.+|.|+.+ +++|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456899999999999999999 99999999999999875 7899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 397 WGRNPGNK 404 (449)
Q Consensus 397 ~~~~~~~~ 404 (449)
|+++...+
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99886544
No 112
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=126.91 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcC--CCCCCCCCcc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQPF 189 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~--~~~~~~~~~~ 189 (449)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.|++ ..+ .+++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 357899999999999999999999999999999999876 48999999999999999998875 445 56889
Q ss_pred cccccccCCCC
Q 013141 190 RLNWATFSGSD 200 (449)
Q Consensus 190 ~~~~~~~~~~~ 200 (449)
+|.|++.....
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99998765433
No 113
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=127.53 Aligned_cols=83 Identities=28% Similarity=0.503 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556799999999999999999999999999999999864 579999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|+++....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999987654
No 114
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=127.41 Aligned_cols=82 Identities=27% Similarity=0.557 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999764 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++...+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99876553
No 115
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=6.1e-17 Score=127.14 Aligned_cols=82 Identities=27% Similarity=0.539 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCC---eEEEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGK---QTVRL 395 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~l~v 395 (449)
....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..+.+ +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999875 6899999999999999999999999998 99999
Q ss_pred EecCCCCCCC
Q 013141 396 SWGRNPGNKQ 405 (449)
Q Consensus 396 ~~~~~~~~~~ 405 (449)
.|++....+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876553
No 116
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=124.40 Aligned_cols=86 Identities=31% Similarity=0.636 Sum_probs=81.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.+.++|||+|||.++++++|+++|+ .||.|..+.+++++.+++++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4678999999999999999999995 999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 286 ATPKKAS 292 (449)
Q Consensus 286 ~~~~~~~ 292 (449)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887654
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8e-17 Score=124.98 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|++ ||+..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999863 6899999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 013141 397 WGRNPGNK 404 (449)
Q Consensus 397 ~~~~~~~~ 404 (449)
|++++..+
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99987554
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=125.60 Aligned_cols=86 Identities=28% Similarity=0.477 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhc-cCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCC-CCCCCCc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~-~~~~~~~ 188 (449)
.....++|||+|||+++++++|+++|+. ||.|.+|.|+.++ +++++|||||+|.+.++|.+|++.|++.. +. ++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~--g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG--SKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS--SSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC--CEe
Confidence 3457889999999999999999999999 9999999999998 89999999999999999999999999988 85 467
Q ss_pred ccccccccCCC
Q 013141 189 FRLNWATFSGS 199 (449)
Q Consensus 189 ~~~~~~~~~~~ 199 (449)
|+|.++.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 88888765443
No 119
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=127.75 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+. ++.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999999885 577888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 887644
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=123.62 Aligned_cols=76 Identities=36% Similarity=0.713 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh-cCCeeCCeEEEEEecC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSWGR 399 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v~~~~ 399 (449)
....++|||+|||..+++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|++.| ++..+.|+.|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999986
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-17 Score=128.31 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhc------CCCCCC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMPN 184 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~------~~~~~~ 184 (449)
.....++|||+|||+++++++|+++|..||.|.+|.|++++.+++++|||||+|.+.++|.+|++.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44678999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred CCCcccccccccCC
Q 013141 185 TDQPFRLNWATFSG 198 (449)
Q Consensus 185 ~~~~~~~~~~~~~~ 198 (449)
.++.|+|.++....
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 45788888887553
No 122
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=125.89 Aligned_cols=88 Identities=28% Similarity=0.662 Sum_probs=81.9
Q ss_pred ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 202 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
.......++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456778999999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 013141 282 RIDVATPKK 290 (449)
Q Consensus 282 ~v~~~~~~~ 290 (449)
+|+++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998763
No 123
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=6.7e-18 Score=138.61 Aligned_cols=120 Identities=22% Similarity=0.332 Sum_probs=76.2
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 013141 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (449)
Q Consensus 253 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (449)
+.|++|.+...+..|++.+++....++.- +.+.. ........++|||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~--------------------------------~~~~~~~~~~l~V 52 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR--------------------------------PPPDVEGMTSLKV 52 (135)
T ss_dssp ------------------------------CCSCC--------------------------------SCSSGGGCCCEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC--------------------------------CCCCCCCCCEEEE
Confidence 56888888888999998888765544321 11111 1223345789999
Q ss_pred cCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 013141 333 GALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 333 ~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 405 (449)
+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|+++...+.
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 999999999999999999999999999753 5899999999999999999999999999999999999865543
No 124
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=124.20 Aligned_cols=86 Identities=19% Similarity=0.408 Sum_probs=80.2
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||.++++++|+++|+ .||.|..+.++.+. +++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999995 99999999999997 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
.++.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99988754
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=128.74 Aligned_cols=95 Identities=24% Similarity=0.332 Sum_probs=79.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
++|||+|||+++++++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|++|++.|++..+. ++.++|.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC--GSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS--SCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC--CcEEEEEEcc
Confidence 58999999999999999999999999999999887 5789999999999999999999999885 4668888887
Q ss_pred cCCCCCc-----cccCCCceEEEcCCC
Q 013141 196 FSGSDRR-----TEACSDLSIFVGDLA 217 (449)
Q Consensus 196 ~~~~~~~-----~~~~~~~~l~v~~lp 217 (449)
....... .......+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 6543322 122336689999986
No 126
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-17 Score=126.03 Aligned_cols=89 Identities=26% Similarity=0.439 Sum_probs=82.9
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456778999999999999999999995 999999999999988999999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999887654
No 127
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.6e-17 Score=133.81 Aligned_cols=83 Identities=23% Similarity=0.525 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999865 789999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|+++....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876544
No 128
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=6.9e-17 Score=124.55 Aligned_cols=85 Identities=26% Similarity=0.457 Sum_probs=80.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
++++|||+|||.++++++|+++|+ .||.|.++.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 467999999999999999999995 9999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013141 287 TPKKAS 292 (449)
Q Consensus 287 ~~~~~~ 292 (449)
.++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 987653
No 129
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=123.05 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=79.7
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred EeecCC
Q 013141 283 IDVATP 288 (449)
Q Consensus 283 v~~~~~ 288 (449)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 130
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=126.97 Aligned_cols=82 Identities=27% Similarity=0.443 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456799999999999999999999999999999999863 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 397 WGRNPGNK 404 (449)
Q Consensus 397 ~~~~~~~~ 404 (449)
|++.....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99986544
No 131
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=3.1e-17 Score=126.56 Aligned_cols=83 Identities=22% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+.+ +.++|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 46899999999999999999999999999999999999899999999999999999999999999998854 7888888
Q ss_pred cccCC
Q 013141 194 ATFSG 198 (449)
Q Consensus 194 ~~~~~ 198 (449)
+....
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 87543
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=2e-17 Score=132.26 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=89.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|++..+. ++.++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS--NRYLVV 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS--SCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEE
Confidence 356789999999999999999999999999999999876 456899999999999999999999999995 577888
Q ss_pred cccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCC
Q 013141 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (449)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~ 235 (449)
.++...... .+++...++++|.++|. .||.
T Consensus 80 ~~a~~~~~~-------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF-------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EECCHHHHT-------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEecCChhh-------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 887643211 56777888999999995 8874
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-17 Score=122.73 Aligned_cols=80 Identities=21% Similarity=0.447 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.+.+ ++|||+|.+.++|.+|++.||+..|.|+.|+|.|+++..
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 345678999999999999999999999999999999984 599999999999999999999999999999999999865
Q ss_pred CC
Q 013141 403 NK 404 (449)
Q Consensus 403 ~~ 404 (449)
.+
T Consensus 83 ~~ 84 (90)
T 2dnp_A 83 KK 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 134
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=125.50 Aligned_cols=80 Identities=26% Similarity=0.487 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~---------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
...++|||+|||.++++++|+++|+.||.|.+|.|.. .+++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999984 2579999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|+++....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999986554
No 135
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-17 Score=124.96 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=81.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987653
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=3.5e-17 Score=139.55 Aligned_cols=138 Identities=19% Similarity=0.375 Sum_probs=74.4
Q ss_pred EEeCCHHHHHHHHHHhCCceec--CcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEc
Q 013141 256 VRFGDENERSRAMTEMNGVYCS--SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVG 333 (449)
Q Consensus 256 V~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 333 (449)
.+|.+.++|+.++..+++.... |+.+...+............ . ..........+......++|||+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~----------~--~s~~~~~~~~~~~~~~~~~l~V~ 78 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERV----------R--NEDDDELEPGPQRSVEGWILFVT 78 (165)
T ss_dssp -------------------------------------------------------------------CCCCC-CEEEEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCcccc----------c--cCCCCCCCCCCCCCCCCCEEEEe
Confidence 7899999999999988876553 44444444221110000000 0 00000011122334567899999
Q ss_pred CCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 013141 334 ALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 334 nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~~ 405 (449)
|||..+++++|+++|+.||.|..|.|+.+ +++|||+|.+.++|.+||+.|||..|.|+.|+|.|++....+.
T Consensus 79 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 79 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999999999999999999865 5899999999999999999999999999999999998765443
No 137
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.8e-17 Score=126.53 Aligned_cols=82 Identities=28% Similarity=0.557 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||.++++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999873 5899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 397 WGRNPGNK 404 (449)
Q Consensus 397 ~~~~~~~~ 404 (449)
|+++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99986544
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.7e-17 Score=128.12 Aligned_cols=78 Identities=26% Similarity=0.513 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
....++|||+|||.++++++|+++|+.||.|.+|++.+++++|||+|.+.++|.+|++.||+..|+|+.|+|.|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999863
No 139
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=125.05 Aligned_cols=80 Identities=29% Similarity=0.518 Sum_probs=73.3
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
.....++|||+|||.++++++|+++|+.|| |.+|.|+.+ +++|||+|.+.++|.+|+ .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999999754 679999999999999999 99999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|++++..+
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999987654
No 140
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-16 Score=125.37 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3455789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 398 GRNPGNK 404 (449)
Q Consensus 398 ~~~~~~~ 404 (449)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 141
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=124.13 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
.+.++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.||+..+. ++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eEEEeec
Confidence 46889999999999999999999999999999999999989999999999999999999999999999884 4566665
Q ss_pred cc
Q 013141 193 WA 194 (449)
Q Consensus 193 ~~ 194 (449)
|+
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 142
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=121.75 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
.....++|||+|| ++++++|+++|+.||.|.+|.|.+++++|||+|.+.++|.+|++.||+..|.|+.|+|.|+++..
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3456789999996 89999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 013141 403 NK 404 (449)
Q Consensus 403 ~~ 404 (449)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 143
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=7e-17 Score=121.51 Aligned_cols=82 Identities=26% Similarity=0.515 Sum_probs=77.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||+++++++|+++|+ .||.|..+.+++++.++.++|+|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34678999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q 013141 285 VAT 287 (449)
Q Consensus 285 ~~~ 287 (449)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 144
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=129.30 Aligned_cols=86 Identities=28% Similarity=0.448 Sum_probs=77.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++++++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .+ .++.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999887 66 45788
Q ss_pred cccccccCC
Q 013141 190 RLNWATFSG 198 (449)
Q Consensus 190 ~~~~~~~~~ 198 (449)
+|.++....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 888886543
No 145
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=2.2e-17 Score=125.65 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=72.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
.+|||+|||+++|+++|+++|+ .|| .|.++.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999995 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 013141 287 TPKKA 291 (449)
Q Consensus 287 ~~~~~ 291 (449)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 88654
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=123.85 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
...++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++..+...++.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4467899999999999999999999999999999998764 5899999999999999999998765444678899
Q ss_pred ccccccCCCC
Q 013141 191 LNWATFSGSD 200 (449)
Q Consensus 191 ~~~~~~~~~~ 200 (449)
|.|+......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998765443
No 147
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.5e-17 Score=129.11 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 113 ~~~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..+.+ .
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL-K 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-C
Confidence 3568999999999 99999999999999999999999999999999999999999999999999999999954 2
Q ss_pred Ccccccccc
Q 013141 187 QPFRLNWAT 195 (449)
Q Consensus 187 ~~~~~~~~~ 195 (449)
+.|+|.++.
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 677777765
No 148
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=127.35 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+||+. ++..+. ++.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~~l~ 88 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--GRNID 88 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET--TEEEB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC--CEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999988 888884 56788
Q ss_pred ccccccCCC
Q 013141 191 LNWATFSGS 199 (449)
Q Consensus 191 ~~~~~~~~~ 199 (449)
|.++.....
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 888775543
No 149
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=125.82 Aligned_cols=87 Identities=23% Similarity=0.431 Sum_probs=81.0
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3345678999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 013141 283 IDVATPKK 290 (449)
Q Consensus 283 v~~~~~~~ 290 (449)
|+++.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99997764
No 150
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=123.35 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=78.7
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 274 (449)
....+.++|||+|||.++++++|+++|+ .||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|++.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3455678999999999999999999995 9999999 999999999999999999999999999999999999
Q ss_pred eecCcceEEeecC
Q 013141 275 YCSSRPMRIDVAT 287 (449)
Q Consensus 275 ~~~g~~i~v~~~~ 287 (449)
.+.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.7e-16 Score=125.59 Aligned_cols=80 Identities=28% Similarity=0.539 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCC-CCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 323 GESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
.....++|||+|||.. +++++|+++|+.||.|.+|.+ .+++|||+|.+.++|.+|++.||+..|+|+.|+|+|++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3445689999999999 999999999999999999999 5899999999999999999999999999999999999875
Q ss_pred CCC
Q 013141 402 GNK 404 (449)
Q Consensus 402 ~~~ 404 (449)
...
T Consensus 101 ~~~ 103 (110)
T 1wf1_A 101 KPD 103 (110)
T ss_dssp CSC
T ss_pred CCC
Confidence 443
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=125.65 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCc-eEEEEEeCCCcEEEEEecCHHHHHHHHHHhcC-CeeCCeEEEEEecCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGE-ILSVKIPVGKGCGFVQFANRKDAEVALQKLQG-TAIGKQTVRLSWGRNP 401 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~l~v~~~~~~ 401 (449)
....++|||+|||.++++++|+++|++||. |..+.+ .++++|||+|.+.++|.+|++.||+ ..|+|+.|+|+|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 345789999999999999999999999999 555555 5689999999999999999999999 9999999999999986
Q ss_pred CCC
Q 013141 402 GNK 404 (449)
Q Consensus 402 ~~~ 404 (449)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=3e-17 Score=126.54 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 323 GESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
...+.++|||+|||. .+++++|+++|+.||.|.+|.+. +++|||+|.+.++|.+|++.||+..+.|+.|+|+|++..
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 345688999999998 99999999999999999999996 799999999999999999999999999999999999886
Q ss_pred CCC
Q 013141 402 GNK 404 (449)
Q Consensus 402 ~~~ 404 (449)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 544
No 154
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=124.45 Aligned_cols=86 Identities=31% Similarity=0.660 Sum_probs=80.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
.+.++|||+|||.++++++|+++|+ .||.|..+ .+++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4678999999999999999999995 99999999 999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887654
No 155
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=4.4e-17 Score=124.45 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
...++++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++..+...+++|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4468899999999999999999999999999999999864 4899999999999999999999887544678899
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.+++..
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9888754
No 156
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8e-17 Score=126.78 Aligned_cols=82 Identities=29% Similarity=0.602 Sum_probs=73.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
.......++|||+|||..+++++|+++|+.||.|.+|.+. +|+|||+|.+.++|.+|++.|||..|+|+.|+|.|++.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3445678999999999999999999999999999999998 89999999999999999999999999999999999998
Q ss_pred CCCC
Q 013141 401 PGNK 404 (449)
Q Consensus 401 ~~~~ 404 (449)
+..+
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7554
No 157
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=126.31 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++|+++|+++|+.||.|.+|.|++++. ++++|||||+|.+.++|.+|++ +++..+.+ +.|+|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g--r~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE--TDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT--TTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC--EEEEE
Confidence 34678999999999999999999999999999999999987 9999999999999999999997 88888854 66676
Q ss_pred cccc
Q 013141 192 NWAT 195 (449)
Q Consensus 192 ~~~~ 195 (449)
.|+.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 6654
No 158
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=125.19 Aligned_cols=87 Identities=25% Similarity=0.517 Sum_probs=81.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999995 99999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 159
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=126.27 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceE--------EEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCe
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEIL--------SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTA 387 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~ 387 (449)
......++|||+|||..+++++|+++|+.||.|. .|.|+.+ +++|||+|.+.++|.+|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455689999999999999999999999999998 5888764 6899999999999999999999999
Q ss_pred eCCeEEEEEecCCCCCC
Q 013141 388 IGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 388 ~~g~~l~v~~~~~~~~~ 404 (449)
|.|+.|+|+|++.....
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999987554
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=136.52 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC--CcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
...++|||+|||+++++++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.|++..+. ++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--GEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeEeE
Confidence 4578999999999999999999999999 9999999999999999999999999999999999999999985 46777
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
|.++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 77765
No 161
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=1.2e-16 Score=130.05 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=81.0
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||.++++++|+++|+ .||.|..|.+++++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 013141 284 DVATPKK 290 (449)
Q Consensus 284 ~~~~~~~ 290 (449)
+++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 162
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=122.14 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=78.0
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 013141 284 DVAT 287 (449)
Q Consensus 284 ~~~~ 287 (449)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 163
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=6.8e-17 Score=128.01 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999999999884 57888
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.|+...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 8887654
No 164
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=2.5e-16 Score=120.35 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|++|++.|++..+. ++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS--GREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT--TBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CcEEEE
Confidence 357889999999999999999999999999999999985 6899999999999999999999999999985 467888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 777654
No 165
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=5.6e-17 Score=127.50 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccC-ceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
...++|||+|||+++++++|+++|+.|| .|..+.+. +++|+|||+|.+.++|.+|++.|||..|+|+.|+|++++.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999 99999986 36899999999999999999999999999999999999875
Q ss_pred C
Q 013141 402 G 402 (449)
Q Consensus 402 ~ 402 (449)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=121.02 Aligned_cols=78 Identities=29% Similarity=0.541 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
..++|||+|||.++++++|+++|+.||.|.+|.++. .+++|||+|.+.++|.+|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999864 4789999999999999999999999999999999999
Q ss_pred CCCCC
Q 013141 399 RNPGN 403 (449)
Q Consensus 399 ~~~~~ 403 (449)
+++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=123.34 Aligned_cols=86 Identities=17% Similarity=0.386 Sum_probs=79.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
.+.++|||+|||.++++++|+++|+ .||.|..+.++++.. ++.++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4568999999999999999999995 999999999999876 668999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|+++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887653
No 168
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=122.80 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
......++|||+|||+++++++|+++|+.||.|.+|+|+.++. .++|||||+|.+.++|++|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE--GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 3456789999999999999999999999999999999999864 48999999999999999999999999984 5778
Q ss_pred cccccccCCC
Q 013141 190 RLNWATFSGS 199 (449)
Q Consensus 190 ~~~~~~~~~~ 199 (449)
+|.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 8888875543
No 169
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=125.40 Aligned_cols=88 Identities=18% Similarity=0.458 Sum_probs=82.1
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC------Cceec
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~ 277 (449)
...+.++|||+|||+++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|++.|+ +..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999995 99999999999999999999999999999999999999999 99999
Q ss_pred CcceEEeecCCCCCC
Q 013141 278 SRPMRIDVATPKKAS 292 (449)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (449)
|+.|+|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887654
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=125.63 Aligned_cols=77 Identities=29% Similarity=0.508 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
++|||+|||.++++++|+++|++||.|.+|.+..+ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|+++...+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999986 999999999999999999999999999999999999987644
No 171
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=124.91 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHhHHH---hhccccCceEEEEEeCCC---------cEEEEEecCHHHHHHHHHHhcCCeeCCe
Q 013141 324 ESNNATIFVGALDSDVSDEDLR---EPFSQFGEILSVKIPVGK---------GCGFVQFANRKDAEVALQKLQGTAIGKQ 391 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~---------g~afV~F~~~~~A~~A~~~l~g~~~~g~ 391 (449)
....++|||+|||+++++++|+ ++|++||.|.+|.|++++ |+|||+|.+.++|.+|++.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999998643 7999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q 013141 392 TVRLSWGRNPG 402 (449)
Q Consensus 392 ~l~v~~~~~~~ 402 (449)
.|+|.|++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999865
No 172
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=127.94 Aligned_cols=84 Identities=23% Similarity=0.512 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+. ++.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v 82 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS--GRALRV 82 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS--SSCBEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CcEEEE
Confidence 346789999999999999999999999999999999999989999999999999999999999999999984 577888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 887644
No 173
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-16 Score=122.57 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc---
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP--- 280 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~-~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 280 (449)
....++|||+|||+++++++|+++|+ .||.|. ++.+++++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 34678999999999999999999995 999999 9999999999999999999999999999999999999999999
Q ss_pred -eEEeecCCCCC
Q 013141 281 -MRIDVATPKKA 291 (449)
Q Consensus 281 -i~v~~~~~~~~ 291 (449)
|+|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999987643
No 174
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=125.58 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|..||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC--CeEEE
Confidence 3456789999999999999999999999999999999999899999999999999999999999999999885 46777
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
|.++.
T Consensus 89 V~~a~ 93 (98)
T 2cqp_A 89 LVLGS 93 (98)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 77765
No 175
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=8.8e-17 Score=122.93 Aligned_cols=81 Identities=28% Similarity=0.491 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
....++|||+|||..+++++|+++|+.||.|.+|.|.+ .+++|||+|.+.++|.+|++.||+..|.|+.|+|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 44578999999999999999999999999999999986 36899999999999999999999999999999999999
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 176
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=3.2e-17 Score=130.98 Aligned_cols=105 Identities=18% Similarity=0.310 Sum_probs=92.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..++++|||+|||.++++++|+++|+ .||.|.++.++++ +.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34678999999999999999999996 9999999999876 4558999999999999999999999999999999999
Q ss_pred ecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCCCCCHhHHHhhccccCc
Q 013141 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353 (449)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~ 353 (449)
++.+.... .+++...++++|.++|++||.
T Consensus 81 ~a~~~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 99765331 356677788999999999974
No 177
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=126.41 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc
Q 013141 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 109 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (449)
.....++++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.+++......++.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344567899999999999999999999999999999999876 58999999999999999998885422235688
Q ss_pred ccccccccCCCC
Q 013141 189 FRLNWATFSGSD 200 (449)
Q Consensus 189 ~~~~~~~~~~~~ 200 (449)
|+|.+++.....
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999988765443
No 178
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=123.48 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=70.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 110 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
....++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++......++.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34467899999999999999999999999999999998875 589999999999999999987643322356889
Q ss_pred cccccccCCC
Q 013141 190 RLNWATFSGS 199 (449)
Q Consensus 190 ~~~~~~~~~~ 199 (449)
+|.|+.....
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9998875543
No 179
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-16 Score=124.46 Aligned_cols=85 Identities=25% Similarity=0.494 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCC------
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~------ 184 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.||+..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999998854
Q ss_pred CCCccccccccc
Q 013141 185 TDQPFRLNWATF 196 (449)
Q Consensus 185 ~~~~~~~~~~~~ 196 (449)
..+++++.|+.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 346677777653
No 180
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=123.02 Aligned_cols=78 Identities=31% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.....++|||+|||..+++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4456789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCC
Q 013141 398 GRN 400 (449)
Q Consensus 398 ~~~ 400 (449)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 181
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.8e-17 Score=125.65 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=74.2
Q ss_pred CCCcEEEE--cCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCee-----CCeEEEEEe
Q 013141 325 SNNATIFV--GALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI-----GKQTVRLSW 397 (449)
Q Consensus 325 ~~~~~l~V--~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~-----~g~~l~v~~ 397 (449)
.++++||| +||++++++++|+++|++||.|.+|.++.+++||||+|.+.++|.+|++.|||+.| .++.|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45688999 77999999999999999999999999999999999999999999999999999998 689999999
Q ss_pred cCCCCCCC
Q 013141 398 GRNPGNKQ 405 (449)
Q Consensus 398 ~~~~~~~~ 405 (449)
+++..-..
T Consensus 103 a~~~p~~~ 110 (114)
T 2cq2_A 103 VEKVQWSG 110 (114)
T ss_dssp ESCCCCSS
T ss_pred cccCcccC
Confidence 98765443
No 182
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=8.3e-17 Score=121.68 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999995 466666 345566
Q ss_pred ccc
Q 013141 191 LNW 193 (449)
Q Consensus 191 ~~~ 193 (449)
|.+
T Consensus 84 v~~ 86 (87)
T 3s7r_A 84 PKK 86 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 183
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=128.72 Aligned_cols=76 Identities=22% Similarity=0.382 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
..++|||+|||+.+++++|+++|++||.|.+|.|++++++|||+|.+.++|.+|++.|||..|.|+.|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999864
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=124.76 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
...++++|||+|||+ ++++++|+++|++||.|.+|.|++++ |||||+|.+.++|.+|++.|++......++.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445789999999999 99999999999999999999998763 79999999999999999999876533367889
Q ss_pred cccccccC
Q 013141 190 RLNWATFS 197 (449)
Q Consensus 190 ~~~~~~~~ 197 (449)
+|.++...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99988744
No 185
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2.2e-16 Score=126.69 Aligned_cols=79 Identities=27% Similarity=0.540 Sum_probs=72.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 394 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 394 (449)
.......++|||+|||.++++++|+++|+.||.|.+|+|+++ +++|||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344566799999999999999999999999999999999864 68999999999999999999999999999999
Q ss_pred EEecC
Q 013141 395 LSWGR 399 (449)
Q Consensus 395 v~~~~ 399 (449)
|+|+|
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99986
No 186
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.3e-16 Score=122.37 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEE
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 395 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 395 (449)
......++|||+|||.++++++|+++|+.|| |.+|.|+++ +++|||+|.+.++|.+|+ .||+..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445679999999999999999999999996 999999864 579999999999999999 89999999999999
Q ss_pred EecCCCCCC
Q 013141 396 SWGRNPGNK 404 (449)
Q Consensus 396 ~~~~~~~~~ 404 (449)
.|+++....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999986544
No 187
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.4e-16 Score=121.55 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCC-CCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 322 DGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
......++|||+|||. .+++++|+++|+.||.|.+|.+. +|+|||+|.+.++|.+|++.|||..|+|+.|+|+|++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3455689999999998 99999999999999999999995 89999999999999999999999999999999999987
Q ss_pred CC
Q 013141 401 PG 402 (449)
Q Consensus 401 ~~ 402 (449)
+.
T Consensus 95 ~~ 96 (97)
T 2xnq_A 95 NA 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 188
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.9e-16 Score=125.43 Aligned_cols=88 Identities=22% Similarity=0.408 Sum_probs=81.5
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..+.++.+..++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445678999999999999999999995 999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 013141 283 IDVATPKKA 291 (449)
Q Consensus 283 v~~~~~~~~ 291 (449)
|.++.++..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999987653
No 189
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=125.70 Aligned_cols=81 Identities=35% Similarity=0.565 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 321 SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.......++|||+|||.++++++|+++|+.||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999999875 7999999999999999999999999999999999
Q ss_pred ecCCC
Q 013141 397 WGRNP 401 (449)
Q Consensus 397 ~~~~~ 401 (449)
|++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 190
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=124.46 Aligned_cols=84 Identities=24% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|..||.|.+|+|+.++ +++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCEEE
Confidence 34568899999999999999999999999999999999997 5999999999999999999999999999985 56777
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8777543
No 191
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.5e-16 Score=122.25 Aligned_cols=87 Identities=20% Similarity=0.462 Sum_probs=80.1
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .|| |..|.+++++.+++++|||||+|.+.++|++|+ .|++..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 3445678999999999999999999995 896 999999999999999999999999999999999 8999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887553
No 192
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=3.3e-17 Score=127.25 Aligned_cols=83 Identities=27% Similarity=0.314 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-
Q 013141 206 CSDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS- 278 (449)
Q Consensus 206 ~~~~~l~v~~lp~------~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 278 (449)
..+++|||+|||. ++++++|+++|+ .||.|.++.+++++.+++++|||||+|.+.++|.+|++.|||..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 999999999996 99999999999999999999999999999999999999999999999
Q ss_pred cceEEeecCCC
Q 013141 279 RPMRIDVATPK 289 (449)
Q Consensus 279 ~~i~v~~~~~~ 289 (449)
+.|+|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 193
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=2.2e-16 Score=124.19 Aligned_cols=88 Identities=17% Similarity=0.399 Sum_probs=81.5
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 280 (449)
...+.++|||+|||.++++++|+++|+ .||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345678999999999999999999995 999999999999999999999999999999999999999999988 8999
Q ss_pred eEEeecCCCCCC
Q 013141 281 MRIDVATPKKAS 292 (449)
Q Consensus 281 i~v~~~~~~~~~ 292 (449)
|+|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887653
No 194
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=125.42 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=80.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||.++++++|+++|+ .||.|..|.++.+. ++.++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34678999999999999999999995 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.9e-16 Score=128.65 Aligned_cols=86 Identities=21% Similarity=0.441 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CeEEE
Confidence 3456789999999999999999999999999999999999889999999999999999999999999999994 57788
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.|+....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88876543
No 196
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=3.6e-17 Score=146.73 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccC--ceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
..++|||+||++.+|+++|+++|+.|| .|++|+|+++ ++||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999864 58999999999999999999999999999999999
Q ss_pred cCC
Q 013141 398 GRN 400 (449)
Q Consensus 398 ~~~ 400 (449)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 863
No 197
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1.2e-16 Score=127.32 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE-----EEEEecC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-----VRLSWGR 399 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-----l~v~~~~ 399 (449)
...++|||+|||+++++++|+++|+.||.|.+|.|+.+ ++|||+|.+.++|.+||+.||+..|+|+. |+|..++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 34689999999999999999999999999999999987 99999999999999999999999999988 8888877
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
+....
T Consensus 93 ~~~~~ 97 (115)
T 3beg_B 93 PRSPS 97 (115)
T ss_dssp ----C
T ss_pred CCCCC
Confidence 65443
No 198
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=123.42 Aligned_cols=86 Identities=52% Similarity=0.913 Sum_probs=80.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhh-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcceE
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMR 282 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~-~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~ 282 (449)
..+.++|||+|||.++|+++|+++|+ . ||.|.++.++++. ++.++|||||+|.+.++|.+|++.|++.. +.|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45678999999999999999999996 8 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999877654
No 199
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=4.4e-16 Score=126.08 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS--SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--CcEEE
Confidence 44678899999999999999999999999999999999998 8999999999999999999999999999884 57888
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.++....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 88887543
No 200
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-16 Score=120.41 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.....++|||+|||..+++++|+++|+.||.| +++. .+++|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34568999999999999999999999999987 3333 379999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 398 GRNPGNK 404 (449)
Q Consensus 398 ~~~~~~~ 404 (449)
++++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987543
No 201
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=1.3e-16 Score=121.13 Aligned_cols=80 Identities=19% Similarity=0.384 Sum_probs=73.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
..++|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|+ .+++..+. ++.|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~--g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR--GRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET--TEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC--CcEEEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 99999984 57778877
Q ss_pred ccc
Q 013141 194 ATF 196 (449)
Q Consensus 194 ~~~ 196 (449)
++.
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 202
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.9e-16 Score=124.78 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +++++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD--GRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEEE
Confidence 34678999999999999999999999999999999999998 8999999999999999999999999999984 46777
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 76653
No 203
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=122.98 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++|+++|+++|+.||.+ +|+|+.++ +++++|||||+|.+.++|++|| .+++..+.+ +.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g--r~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQH--RYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS--SCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECC--cEEEE
Confidence 3567899999999999999999999999955 99999997 8999999999999999999999 578888854 56777
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 666543
No 204
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=7.7e-17 Score=118.16 Aligned_cols=75 Identities=25% Similarity=0.334 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
+|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+.+ +.+++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC--EEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999997 89988854 56666553
No 205
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=119.30 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
..++|||+|||.++++++|+++|+ .||.|.++.++.+..++. ++|+|||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999995 999999999999987665 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013141 286 ATPKK 290 (449)
Q Consensus 286 ~~~~~ 290 (449)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97754
No 206
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=121.53 Aligned_cols=84 Identities=24% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|..||.|.+|.++.++.+++++|||||+|.+.++|.+||+ ++..+ .++.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEEE
Confidence 45678899999999999999999999999999999999999899999999999999999999997 34555 457788
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.++....
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 88876543
No 207
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=124.51 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=81.7
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~--------~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
.....++|||+|||.++|+++|+++|+ .||.|. .+.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 345678999999999999999999995 999999 69999998899999999999999999999999999999
Q ss_pred ecCcceEEeecCCCCCC
Q 013141 276 CSSRPMRIDVATPKKAS 292 (449)
Q Consensus 276 ~~g~~i~v~~~~~~~~~ 292 (449)
|.|+.|+|+++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 208
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=4e-16 Score=120.01 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=77.2
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||+++++++|+++|+ .||.|.++.+++++. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 345678999999999999999999995 999999999999976 899999999999999999999999999999999999
Q ss_pred eecCC
Q 013141 284 DVATP 288 (449)
Q Consensus 284 ~~~~~ 288 (449)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=2.6e-17 Score=161.48 Aligned_cols=157 Identities=18% Similarity=0.335 Sum_probs=109.7
Q ss_pred HHHHhhccCCcEEEEEEec----C-CCCCcccEE--EEEEccHHHHHHHHHHhcCCCCCCC-------------CCcccc
Q 013141 132 LHNCFSHTGQVVNVKVIRN----K-QTGQSEGYG--FVEFYSRAAAEKVLQSYSGSLMPNT-------------DQPFRL 191 (449)
Q Consensus 132 l~~~f~~~G~v~~v~~~~~----~-~~g~~~g~a--fV~f~~~~~A~~Al~~l~~~~~~~~-------------~~~~~~ 191 (449)
|.++|.++++|..|..+.. + .+....|++ |++|.+...+..++..++....... ...+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999988743322 1 112223333 7788776554433321111100000 000000
Q ss_pred cccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 013141 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (449)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 271 (449)
|. ..........+.++|||+|||+++|+++|.++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|
T Consensus 89 -~~--p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 89 -WD--PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred -cC--CcccccccCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 00 0011112234567999999999999999999995 9999999999999989999999999999999999999999
Q ss_pred CCceecCcceEEeecCCCCCC
Q 013141 272 NGVYCSSRPMRIDVATPKKAS 292 (449)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~~~ 292 (449)
|+..|.|+.|.|.++......
T Consensus 165 ng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred CCCEECCEEEEEEEeCCCCCC
Confidence 999999999999999876543
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=9.2e-17 Score=124.77 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecC-CCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
.....++|||+|||+++++++|+++|+.|| |.+|.+++++ .+|+++|||||+|.+.++|.+|+ .|++..+. ++.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~--g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT--TBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC--CeEE
Confidence 345789999999999999999999999999 9999999998 68999999999999999999999 89999984 5677
Q ss_pred cccccccC
Q 013141 190 RLNWATFS 197 (449)
Q Consensus 190 ~~~~~~~~ 197 (449)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 88777643
No 211
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=122.42 Aligned_cols=86 Identities=23% Similarity=0.445 Sum_probs=79.7
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
...+.++|||+|||+++++++|+++|+ .|| |..|.+++++.+ ++++|||||+|.+.++|++|+ .|++..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 345678999999999999999999995 999 999999999887 999999999999999999999 9999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|+++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887654
No 212
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-16 Score=122.13 Aligned_cols=83 Identities=16% Similarity=0.272 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.+..+ ++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD--GYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET--TEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeEEE
Confidence 4457899999999999999999999999999999999654 568999999999999999999999999884 57888
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.|++...
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88887543
No 213
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=4.9e-16 Score=117.97 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||+|||.++++++|+++|+ .||.|.++.++.++.++.++|+|||+|.+.++|++|+ .|++..+.|+.|+|.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 357999999999999999999995 9999999999999889999999999999999999999 99999999999999999
Q ss_pred CCC
Q 013141 287 TPK 289 (449)
Q Consensus 287 ~~~ 289 (449)
++.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 774
No 214
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=131.13 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..++|||+|||+++|+++|+++|+ .|| .|.+|.+++|+.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999995 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9987543
No 215
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=6.3e-17 Score=124.55 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|++|++.|++..+. ++.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC--CcEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999985 4667766
Q ss_pred ccc
Q 013141 193 WAT 195 (449)
Q Consensus 193 ~~~ 195 (449)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 553
No 216
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=6.4e-16 Score=116.75 Aligned_cols=80 Identities=26% Similarity=0.455 Sum_probs=74.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||+++++++|+++|+ .||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45678999999999999999999995 99999999999999999999999999999999999995 68889999999998
Q ss_pred ec
Q 013141 285 VA 286 (449)
Q Consensus 285 ~~ 286 (449)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 217
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=1.2e-16 Score=126.07 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.+++++.+|+++|||||+|.+.++|++|++.+ +..+ .++.++
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEE
Confidence 4467899999999999999999999999999999999999999999999999999999999999875 4666 457778
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
+.++...
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 8777644
No 218
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=124.00 Aligned_cols=86 Identities=34% Similarity=0.573 Sum_probs=80.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++++++|+++|+ .||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3467999999999999999999995 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013141 286 ATPKKAS 292 (449)
Q Consensus 286 ~~~~~~~ 292 (449)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9887553
No 219
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=122.42 Aligned_cols=87 Identities=26% Similarity=0.399 Sum_probs=81.1
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||+++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+|++. ++..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 455678999999999999999999995 999999999999999999999999999999999999988 999999999999
Q ss_pred eecCCCCCC
Q 013141 284 DVATPKKAS 292 (449)
Q Consensus 284 ~~~~~~~~~ 292 (449)
+++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887654
No 220
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=121.64 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=78.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||+++++++|+++|+ .||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34568999999999999999999995 99999999899998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 013141 285 VATPK 289 (449)
Q Consensus 285 ~~~~~ 289 (449)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98764
No 221
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=119.61 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEe--CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
.....++|||+|||+.+++++|+++|+.||.|. +.++ ..+++|||+|.+.++|.+|++.||+..|.|+.|+|+|+++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 445678999999999999999999999999986 4554 4589999999999999999999999999999999999998
Q ss_pred CCC
Q 013141 401 PGN 403 (449)
Q Consensus 401 ~~~ 403 (449)
+..
T Consensus 94 ~~~ 96 (97)
T 2e5j_A 94 QRD 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.9e-16 Score=122.08 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEE-EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
....++|||+|||+++++++|+++|..||.|.+ |.|+.+ .+++++|||||+|.+.++|++||+. ++..+.+ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g--r~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH--RYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS--SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC--cEEE
Confidence 356789999999999999999999999999987 888888 6899999999999999999999986 8888854 5677
Q ss_pred cccccc
Q 013141 191 LNWATF 196 (449)
Q Consensus 191 ~~~~~~ 196 (449)
|.++..
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 766653
No 223
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=7.1e-16 Score=121.42 Aligned_cols=82 Identities=32% Similarity=0.470 Sum_probs=77.2
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||+++++++|+++|+ .||.|..+.++.+. ++.++|+|||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999999999999995 99999999999998 8999999999999999999999999999999999999
Q ss_pred eecC
Q 013141 284 DVAT 287 (449)
Q Consensus 284 ~~~~ 287 (449)
+++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9975
No 224
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8e-17 Score=118.75 Aligned_cols=76 Identities=28% Similarity=0.421 Sum_probs=69.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~ 194 (449)
++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.++|++|++.++ ..+. ++.+++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~--g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD--SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS--SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC--CEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999888 6664 466666654
No 225
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.1e-15 Score=122.10 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcE-EEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGRNPGN 403 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~~~~ 403 (449)
...|||+||++.+++++|+++|++||.|.+|+|....|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|++++..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 345789999999999999999999999999998766686 9999999999999999999999987 6999999998653
No 226
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=121.65 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||+++|+++|+++|+ .||.|.+|.+++++. +.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 34568999999999999999999995 999999999999977 9999999999999999999997 99999999999999
Q ss_pred ecCC
Q 013141 285 VATP 288 (449)
Q Consensus 285 ~~~~ 288 (449)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8765
No 227
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.6e-16 Score=119.54 Aligned_cols=83 Identities=29% Similarity=0.476 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
......++|||+|||.++++++|+++|+.|+.|.-+.... .+++|||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3455678999999999999999999999885433222211 2589999999999999999999999999999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 986543
No 228
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=116.55 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=77.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||+++++++|+++|+ .| .|..+.++++ .+++++|+|||+|.+.++|.+|++ |++..|.|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34568999999999999999999995 89 9999999999 789999999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.++..
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9987743
No 229
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=119.27 Aligned_cols=86 Identities=24% Similarity=0.464 Sum_probs=78.2
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||.++++++|+++|+ .||.|..|.++++..+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345678999999999999999999995 9999999999998543 6899999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 013141 284 DVATPKKAS 292 (449)
Q Consensus 284 ~~~~~~~~~ 292 (449)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999887543
No 230
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=3.6e-16 Score=114.79 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
.+.-|||+||++.+|+++|+++|. .||+|.++++.. ++|||||+|.++++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999995 999999999864 5899999999999999999999999999999999999
Q ss_pred C
Q 013141 287 T 287 (449)
Q Consensus 287 ~ 287 (449)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 231
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.5e-16 Score=118.34 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
...+.++|||+|||+++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|++|++.|++..+.+.++.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998764 5799999999999999999999999964478899
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.|+...
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9888754
No 232
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=8.5e-16 Score=129.74 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=81.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||.++|+++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|++||+.|++..|.++.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
+++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987644
No 233
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=4.9e-16 Score=122.58 Aligned_cols=87 Identities=29% Similarity=0.454 Sum_probs=76.5
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
......++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|++|++.+ +..+.|+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 3445678999999999999999999995 9999999999999999999999999999999999999876 5999999999
Q ss_pred EeecCCCCC
Q 013141 283 IDVATPKKA 291 (449)
Q Consensus 283 v~~~~~~~~ 291 (449)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999988754
No 234
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=5.8e-16 Score=128.90 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGR 399 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~ 399 (449)
.....+|||+||++.+++++|+++|++||.|++|.|.. .+++|||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34457799999999999999999999999999999874 36799999999999999999999999965 999999999
Q ss_pred CCCC
Q 013141 400 NPGN 403 (449)
Q Consensus 400 ~~~~ 403 (449)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8653
No 235
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=123.69 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-cEEEEEE-ecCCCCCcccEEEEEEccHHHHHHHHHHhc--CCCCCCCCCc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQP 188 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~-~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--~~~~~~~~~~ 188 (449)
.+.++|||+|||+++++++|+++|..||. |.+|.++ .++.+++++|||||+|.+.++|.+|++.|+ +..+. ++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec--CCe
Confidence 46789999999999999999999999998 9999998 788889999999999999999999999996 46774 578
Q ss_pred ccccccccCCC
Q 013141 189 FRLNWATFSGS 199 (449)
Q Consensus 189 ~~~~~~~~~~~ 199 (449)
|+|.|+.....
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 88888876543
No 236
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=2.1e-15 Score=122.08 Aligned_cols=86 Identities=28% Similarity=0.428 Sum_probs=80.4
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||.++++++|+++|+ .||.|..+.++.+. +++++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 446678999999999999999999995 99999999999997 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
+++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99988654
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=2.6e-16 Score=121.09 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||+++++++|+++|. .||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3458999999999999999999995 999999999999989999999999999999999999999999999999999998
Q ss_pred cCC
Q 013141 286 ATP 288 (449)
Q Consensus 286 ~~~ 288 (449)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=129.27 Aligned_cols=82 Identities=22% Similarity=0.439 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--TEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 3457899999999999999999999999999999999999989999999999999999999999999998885 46666
Q ss_pred cccc
Q 013141 191 LNWA 194 (449)
Q Consensus 191 ~~~~ 194 (449)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 6553
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=5.3e-16 Score=119.84 Aligned_cols=79 Identities=27% Similarity=0.534 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHhHHH----hhccccCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
..+.++|||+|||.++++++|+ ++|+.||.|.+|.+.+ ++++|||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999 9999999999999984 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013141 397 WGRNPG 402 (449)
Q Consensus 397 ~~~~~~ 402 (449)
|+++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 999864
No 240
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.7e-16 Score=118.53 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 206 CSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~----~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
...++|||+|||.++++++|+ ++|+ .||.|.++.++.++.+ +|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 356799999999999999999 9995 9999999999988765 8899999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 013141 282 RIDVATPKKA 291 (449)
Q Consensus 282 ~v~~~~~~~~ 291 (449)
+|+++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 241
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=127.96 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++|+++|+++|..||.|.++.++.+..+|+++|||||+|.+.++|++||+ +++..|. ++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG--NRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST--TSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEE
Confidence 34567899999999999999999999999999987777777899999999999999999999998 9999985 46677
Q ss_pred ccccc
Q 013141 191 LNWAT 195 (449)
Q Consensus 191 ~~~~~ 195 (449)
|.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 76664
No 242
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=124.27 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
...++|||+|||..+++++|+++|+.||.|.+|.|+.+ +++|||+|.+.++|.+|++. ++..|+|+.|+|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34689999999999999999999999999999999874 58999999999999999987 999999999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987544
No 243
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=9.6e-17 Score=122.18 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=71.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccc
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~ 195 (449)
++|||+|||+++++++|+++|+.||.|.+|.+++++.+++++|||||+|.+.+ |.+|+..|++..+. ++.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC--CeEEEEEEcC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999985 5778888876
Q ss_pred cC
Q 013141 196 FS 197 (449)
Q Consensus 196 ~~ 197 (449)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 244
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=116.93 Aligned_cols=78 Identities=15% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
....++|||+|||+++++++|+++|+.| .|.+|.|+++ +|+|||+|.+.++|.+|++ ||+..|+|+.|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 9999999864 6899999999999999999 9999999999999999
Q ss_pred CCCCC
Q 013141 399 RNPGN 403 (449)
Q Consensus 399 ~~~~~ 403 (449)
++...
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 88643
No 245
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=127.45 Aligned_cols=81 Identities=20% Similarity=0.376 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++++++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|++|| .|++..+. ++.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET--TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC--CeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999 99999984 4677777
Q ss_pred cccc
Q 013141 193 WATF 196 (449)
Q Consensus 193 ~~~~ 196 (449)
++..
T Consensus 100 ~a~~ 103 (114)
T 2cq4_A 100 ASQA 103 (114)
T ss_dssp EHHH
T ss_pred ecCC
Confidence 7653
No 246
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=9.6e-16 Score=122.87 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-CCcE-EEEEecCHHHHHHHHHHhcCCeeCC--eEEEEEecCC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-GKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSWGRN 400 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~~~~ 400 (449)
.....|||+||++.+|+++|+++|++||.|.+|.+.. .+++ |||+|.+.++|.+|++.|||..|.| +.|+|+|++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4456788999999999999999999999999998875 4677 9999999999999999999999988 9999999998
Q ss_pred CCC
Q 013141 401 PGN 403 (449)
Q Consensus 401 ~~~ 403 (449)
..-
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 643
No 247
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=119.61 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
.+.++|||+|||+++++++|+++|+ .||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+..+.|+.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4678999999999999999999995 999999999999998999999999999999999999999999999999998876
Q ss_pred cC
Q 013141 286 AT 287 (449)
Q Consensus 286 ~~ 287 (449)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 248
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=125.21 Aligned_cols=79 Identities=18% Similarity=0.431 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHH----hhccccCceEEEEEeC---CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLR----EPFSQFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~---~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ ++|+|||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3457899999999999999876 6999999999999864 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 013141 397 WGRNPG 402 (449)
Q Consensus 397 ~~~~~~ 402 (449)
|++.+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 999754
No 249
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=5.6e-16 Score=117.26 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPG 402 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~ 402 (449)
..++|||+|||+++++++|+++|++| .|.++.+.+++|+|||+|.+.++|.+|++.||+..++|+.|+|+|++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46789999999999999999999999 99999998889999999999999999999999999999999999997653
No 250
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3e-16 Score=114.95 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
+|||+|||+++++++|+++|+ .||.|.++.++.++.++.++|||||+|.+.++|++|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999995 99999999999998899999999999999999999996 9999999999999875
No 251
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=123.72 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCC---cEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCC
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (449)
.....++|||+|||+++|+++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|++||+ +++..+. ++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMG--QR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSS--SS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeC--Ce
Confidence 4467889999999999999999999999998 89999999987 9999999999999999999998 8998884 45
Q ss_pred cccccccc
Q 013141 188 PFRLNWAT 195 (449)
Q Consensus 188 ~~~~~~~~ 195 (449)
.|+|.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 66766654
No 252
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=123.92 Aligned_cols=81 Identities=12% Similarity=0.325 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCC
Q 013141 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (449)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.||+..+. ++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--GN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT--TS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC--CC
Confidence 3567899999999999999876 6999999999988754 5789999999999999999999999999985 56
Q ss_pred cccccccccC
Q 013141 188 PFRLNWATFS 197 (449)
Q Consensus 188 ~~~~~~~~~~ 197 (449)
.|+|.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 8888888744
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6e-16 Score=121.13 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..++++|||+|||++ +++++|+++|++||.|.+|+|++. +|||||+|.+.++|.+|++.|++......++.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999998 999999999999999999999753 5899999999999999999987655333678899
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9888644
No 254
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=129.41 Aligned_cols=87 Identities=16% Similarity=0.355 Sum_probs=80.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eec
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCS 277 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~--i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~ 277 (449)
.....++|||+|||+++|+++|+++|+ .||.|.. |++++|+.+++++|||||+|.+. +|.+|++.|++. .+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 345678999999999999999999995 9999977 99999998999999999999999 999999999999 999
Q ss_pred CcceEEeecCCCCCC
Q 013141 278 SRPMRIDVATPKKAS 292 (449)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (449)
|+.|+|+++.++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999886543
No 255
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=123.17 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=80.3
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||.++++++|+++|. .||.|..|.++.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|+|
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 344568999999999999999999995 999999999999999999999999999999999999977 999999999999
Q ss_pred eecCCCCCC
Q 013141 284 DVATPKKAS 292 (449)
Q Consensus 284 ~~~~~~~~~ 292 (449)
.++.++...
T Consensus 101 ~~a~~~~~~ 109 (116)
T 1x4b_A 101 KRAVAREES 109 (116)
T ss_dssp ECCSSCCCC
T ss_pred EECCCCccC
Confidence 999887653
No 256
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=126.24 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCc-EEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
.....++|||+|||+++|+++|+++|+.||.| .+|+|+.++ +++++|||||+|.+.++|++||+. ++..|. ++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~--gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN--GREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET--TEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC--CeEE
Confidence 34577899999999999999999999999999 899999998 899999999999999999999976 888884 4677
Q ss_pred ccccccc
Q 013141 190 RLNWATF 196 (449)
Q Consensus 190 ~~~~~~~ 196 (449)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 7777653
No 257
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-15 Score=117.36 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=79.3
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..+.++.++.++.++|||||+|.+.++|.+|++ ++..|.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445678999999999999999999995 99999999999999999999999999999999999997 47789999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887653
No 258
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=2.6e-16 Score=128.46 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---cEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (449)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..+. ++.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG--HRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS--SSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC--CEE
Confidence 356789999999999999999999999999 89999999987 9999999999999999999998 9998884 456
Q ss_pred ccccccc
Q 013141 189 FRLNWAT 195 (449)
Q Consensus 189 ~~~~~~~ 195 (449)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 6665543
No 259
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=2.6e-16 Score=126.02 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC---cEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (449)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++||+ +++..+. ++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMG--HRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEET--TEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeEC--CeE
Confidence 356789999999999999999999999998 89999999976 9999999999999999999998 8998884 456
Q ss_pred ccccccc
Q 013141 189 FRLNWAT 195 (449)
Q Consensus 189 ~~~~~~~ 195 (449)
|+|.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 6666553
No 260
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=9.3e-16 Score=127.68 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
....+|||+||++.+|+++|+++|++||.|.+|+|+.++ ++|||||+|.+.++|++|++.|++..|.+.++.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 455679999999999999999999999999999987542 5689999999999999999999999998777899999
Q ss_pred ccccCCCC
Q 013141 193 WATFSGSD 200 (449)
Q Consensus 193 ~~~~~~~~ 200 (449)
|++.....
T Consensus 120 ~Ak~~~l~ 127 (164)
T 1sjr_A 120 FSKLTSLN 127 (164)
T ss_dssp ECSSSSCC
T ss_pred EecCCccc
Confidence 99876443
No 261
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=118.90 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.....++|||+|||+++++++|+++|+.||.| +|+|+.+ +|+|||+|.+.++|.+||+ +|+..|+++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 8888754 6899999999999999995 799999999999999
Q ss_pred cCCCC
Q 013141 398 GRNPG 402 (449)
Q Consensus 398 ~~~~~ 402 (449)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88754
No 262
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=121.31 Aligned_cols=83 Identities=22% Similarity=0.414 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCce----EEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEI----LSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.....++|||+|||..+++++|+++|+.||.| ..+++.. .+++|||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998 5666654 47999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 013141 397 WGRNPGNKQ 405 (449)
Q Consensus 397 ~~~~~~~~~ 405 (449)
|+++...+.
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 263
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9e-16 Score=121.57 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=78.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHH---HHHhhhCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~---~~f~~~~g~v~~i~~~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
....++|||+|||+++++++|+ ++|+ .||.|.++.++++..++ .++|||||+|.+.++|++|++.||+..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3456799999999999999999 9995 99999999999887644 566999999999999999999999999999
Q ss_pred cceEEeecCCCCC
Q 013141 279 RPMRIDVATPKKA 291 (449)
Q Consensus 279 ~~i~v~~~~~~~~ 291 (449)
+.|+|+++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999988764
No 264
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=115.52 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=63.4
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 115 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
+++|||+|||+.+ ++++|+++|++||.|.+|.+.+ .+|+++|||||+|.+.++|.+|++.||+..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4799999999999 7799999999999999999873 5789999999999999999999999999998654
No 265
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=121.74 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=75.1
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
......++|||+|||.++++++|+++|+ .|| |.++.++++. .+++++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 3445678999999999999999999995 999 9999999998 58999999999999999999999 899999999999
Q ss_pred EEeecCCCC
Q 013141 282 RIDVATPKK 290 (449)
Q Consensus 282 ~v~~~~~~~ 290 (449)
+|+++.++.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998763
No 266
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=120.72 Aligned_cols=84 Identities=20% Similarity=0.459 Sum_probs=77.1
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
......++|||+|||.++++++|+++|+ .||.|..+.++++. +.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455678999999999999999999995 99999999999885 34899999999999999999999999999999999
Q ss_pred EeecCCC
Q 013141 283 IDVATPK 289 (449)
Q Consensus 283 v~~~~~~ 289 (449)
|+++.++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999875
No 267
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=119.64 Aligned_cols=83 Identities=17% Similarity=0.451 Sum_probs=76.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-------- 276 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-------- 276 (449)
....++|||+|||+++++++|+++|+ .||.|..+.++++. ++.++|||||+|.+.++|++|++.||+..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 45678999999999999999999995 99999999999997 899999999999999999999999999999
Q ss_pred cCcceEEeecCCC
Q 013141 277 SSRPMRIDVATPK 289 (449)
Q Consensus 277 ~g~~i~v~~~~~~ 289 (449)
.+++|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999864
No 268
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-16 Score=121.19 Aligned_cols=85 Identities=15% Similarity=0.286 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcce
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPM 281 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~-v~~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i 281 (449)
.+.++|||+|||.++|+++|+++|. .||. |.++.++ .+..++.++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 4578999999999999999999995 9998 9999998 788888999999999999999999999996 589999999
Q ss_pred EEeecCCCCC
Q 013141 282 RIDVATPKKA 291 (449)
Q Consensus 282 ~v~~~~~~~~ 291 (449)
+|+++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999988755
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=119.72 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCC------CHhHHHhhccccCceEEEEEeC----CCcEEEEEecCHHHHHHHHHHhcCCeeCCe-
Q 013141 323 GESNNATIFVGALDSDV------SDEDLREPFSQFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ- 391 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~- 391 (449)
.....++|||+|||+.+ ++++|+++|+.||.|.+|.|++ ++|+|||+|.+.++|.+|++.|||..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 7899999999999999999984 479999999999999999999999999998
Q ss_pred EEEEEecCCCC
Q 013141 392 TVRLSWGRNPG 402 (449)
Q Consensus 392 ~l~v~~~~~~~ 402 (449)
.|+|.|+++..
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999998653
No 270
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=123.60 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.6
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .||.|..+.+++++.+++++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456778999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 013141 283 IDVA 286 (449)
Q Consensus 283 v~~~ 286 (449)
|+++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 271
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=7.5e-16 Score=124.78 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
..++|||+|||.++++++|+++|+.||.|.+|.++.+ +++|||+|.+.++|.+|+ .||+..|+|+.|+|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999764 689999999999999999 799999999999999999
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
.....
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 75443
No 272
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.3e-16 Score=122.83 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|++|+ .|++..|.|+.|+|.+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 4567999999999999999999995 9999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 013141 286 ATPKK 290 (449)
Q Consensus 286 ~~~~~ 290 (449)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87653
No 273
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-17 Score=131.91 Aligned_cols=81 Identities=26% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEE--------EEEeCC------CcEEEEEecCHHHHHHHHHHhcCCeeC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~------~g~afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
....++|||+|||..+++++|+++|+.||.|.+ |.|+.+ +++|||+|.+.++|.+|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 777754 689999999999999999999999999
Q ss_pred CeEEEEEecCCCCCC
Q 013141 390 KQTVRLSWGRNPGNK 404 (449)
Q Consensus 390 g~~l~v~~~~~~~~~ 404 (449)
|+.|+|.|++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999986543
No 274
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=122.56 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
...++|||+|||+++++++|+++|+.| .|.+|.|+.++. |+++|||||+|.+.++|++|| .+++..|.+ +.|+|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g--r~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ--RYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETT--EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECC--eEEEEE
Confidence 356799999999999999999999999 899999999975 999999999999999999999 789988854 456654
Q ss_pred cc
Q 013141 193 WA 194 (449)
Q Consensus 193 ~~ 194 (449)
.+
T Consensus 89 ~a 90 (109)
T 2dnn_A 89 PA 90 (109)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 275
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-16 Score=123.26 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+ .++.++.+++++|||||+|.+.++|.+|++ |++..+. ++.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--CcEEEE
Confidence 446789999999999999999999999999888 677777789999999999999999999998 9999985 578888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 887654
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-16 Score=114.64 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
++|||+|||.++++++|+++|+ .||.|..+.+++++.+++++|+|||+|.+.++|++|++.++ ..+.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999995 99999999999998899999999999999999999999999 9999999999986
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=115.43 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCc-EEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG-CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g-~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
...++|||+|||.++++++|+++|+.||.|.+|.+.+..+ +|||+|.+.++|.+|++ ||+..|+|+.|+|.++.+...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3467999999999999999999999999999984433322 99999999999999999 999999999999999886554
Q ss_pred C
Q 013141 404 K 404 (449)
Q Consensus 404 ~ 404 (449)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1.2e-16 Score=130.80 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSW 397 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 397 (449)
.....++|||+|||+++|+++|+++|++|| |.+|.|+.+ +|+|||+|.+.++|++|| .+|+..|+++.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345578999999999999999999999999 669998853 789999999999999999 7899999999999999
Q ss_pred cCCCCC
Q 013141 398 GRNPGN 403 (449)
Q Consensus 398 ~~~~~~ 403 (449)
+.....
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887643
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=115.29 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG--TDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS--SSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC--CcEEE
Confidence 345688999999999999999999999999996 666654 57899999999999999999999999985 46788
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.++...
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 8887643
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=116.80 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEE-EeCC--CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVK-IPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~-i~~~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
....++|||+|||+.+++++|+++|+.||.|.+|+ ++.+ .+.|||+|.+.++|.+|++.|||..|.|+.|+|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34568999999999999999999999999999994 7765 35599999999999999999999999999999999998
Q ss_pred CC
Q 013141 401 PG 402 (449)
Q Consensus 401 ~~ 402 (449)
..
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 281
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=2.7e-16 Score=119.70 Aligned_cols=81 Identities=33% Similarity=0.580 Sum_probs=73.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 209 ~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
++|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|||||+|.+.+ |.+|++.|++..+.|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4899999999999999999995 9999999999999999999999999999999 9999999999999999999999988
Q ss_pred CCC
Q 013141 289 KKA 291 (449)
Q Consensus 289 ~~~ 291 (449)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 282
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=2.3e-15 Score=121.87 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++|+++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|++|+ .|++..|.|+.|+|++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 4568999999999999999999995 9999999999999889999999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 013141 286 ATPKKA 291 (449)
Q Consensus 286 ~~~~~~ 291 (449)
+.....
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 987543
No 283
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.2e-16 Score=129.33 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred cEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCee
Q 013141 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (449)
Q Consensus 158 g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~ 237 (449)
|+||.+|..++.+..++..+....- +... - ...............++|||+|||+++|+++|+++|+ .|| |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g-g~~~--g---~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTG-GQQM--G---RGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS-PLN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS
T ss_pred CcccccccCccccchhcccchhccC-CCCC--C---CCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce
Confidence 5788888888887777755333211 1100 0 0000111122345567999999999999999999995 999 67
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCC
Q 013141 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 238 ~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 291 (449)
+|.|++++. ++++|||||+|.+.++|++|| .+++..|.++.|+|.++.....
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999976 999999999999999999999 8999999999999999887654
No 284
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=112.28 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCHhH----HHhhcccc-CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 013141 327 NATIFVGALDSDVSDED----LREPFSQF-GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNP 401 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~----L~~~f~~~-G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~ 401 (449)
.+.|||+|||+++++++ |+++|++| |.|.+|. .|+|||+|.+.++|.+|++.|+|..|.|+.|+|.|++.+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 34499999999999988 55899999 5999992 399999999999999999999999999999999999986
Q ss_pred CCC
Q 013141 402 GNK 404 (449)
Q Consensus 402 ~~~ 404 (449)
..-
T Consensus 85 sd~ 87 (96)
T 2diu_A 85 REL 87 (96)
T ss_dssp CCC
T ss_pred cce
Confidence 544
No 285
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=118.52 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=75.6
Q ss_pred cCCCceEEEcCCCCCC------CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 205 ACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~------t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
....++|||+|||+.+ |+++|+++|+ .||.|.++.++ ..+++++|||||+|.+.++|.+|++.|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3456899999999999 7899999995 99999999988 3678999999999999999999999999999999
Q ss_pred c-ceEEeecCCCC
Q 013141 279 R-PMRIDVATPKK 290 (449)
Q Consensus 279 ~-~i~v~~~~~~~ 290 (449)
+ .|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 9 99999997654
No 286
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=116.13 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR--GKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT--TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC--CceEE
Confidence 4467889999999999999999999999999999999865 589999999999999999999999985 47788
Q ss_pred ccccccC
Q 013141 191 LNWATFS 197 (449)
Q Consensus 191 ~~~~~~~ 197 (449)
|.++...
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 8888754
No 287
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.8e-16 Score=114.41 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
+|||+|||+++++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|++|++. ++..+.+ +.+++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g--~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL--SKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT--BCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC--EEEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999974 7777744 4555443
No 288
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=115.91 Aligned_cols=86 Identities=29% Similarity=0.502 Sum_probs=77.5
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....+.++|||+|||.++++++|+++|+ .| ..+.++.+..++.++|||||+|.+.++|++|++.|++..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999999999999995 66 4788888888899999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 013141 283 IDVATPKKAS 292 (449)
Q Consensus 283 v~~~~~~~~~ 292 (449)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987654
No 289
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=115.41 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 322 DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
......++|||+|||..+++++|+++|+.||.|..+ ... .+|+|||+|.+.++|.+|++.||+..|.|+.|+|.|++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 344567899999999999999999999999998877 222 37899999999999999999999999999999999998
Q ss_pred CCCCC
Q 013141 400 NPGNK 404 (449)
Q Consensus 400 ~~~~~ 404 (449)
++...
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 86543
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=117.49 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=76.3
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
....++|||+|||+++|+++|+++|+ .||.|.. |.++.+ .+++++|||||+|.+.++|++||+. ++..+.++.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34568999999999999999999995 9999987 888888 7899999999999999999999986 999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
.++..+..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99877644
No 291
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.3e-15 Score=124.36 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=76.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
....++|||+|||+++|+++|+++|+ .||. |.+|++++++. ++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 44678999999999999999999995 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 013141 282 RIDVATPK 289 (449)
Q Consensus 282 ~v~~~~~~ 289 (449)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 292
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=117.85 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
...+|||+|||+++|+++|+++|+ .| .|.+|.|++++. ++++|||||+|.+.++|++|| .+++..|.++.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 457999999999999999999995 89 899999999976 999999999999999999999 79999999999999888
Q ss_pred CCC
Q 013141 287 TPK 289 (449)
Q Consensus 287 ~~~ 289 (449)
..+
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 293
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=120.47 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=76.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v-~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
....++|||+|||+++|+++|+++|+ .||.| ..|.+++++ +++++|||||+|.+.++|++||+. ++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45678999999999999999999995 99999 899999997 899999999999999999999976 999999999999
Q ss_pred eecCCCC
Q 013141 284 DVATPKK 290 (449)
Q Consensus 284 ~~~~~~~ 290 (449)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997754
No 294
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.60 E-value=1.9e-15 Score=120.97 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=75.9
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
....++|||+|||+++|+++|+++|+ .||. |..|+++++.. ++++|||||+|.+.++|++||+ +++..|.++.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 44568999999999999999999995 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 013141 282 RIDVATPK 289 (449)
Q Consensus 282 ~v~~~~~~ 289 (449)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 295
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-15 Score=111.87 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=73.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||.++++++|+++|+ .||.|.++.++ ++||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 35678999999999999999999995 99999999987 5799999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99887653
No 296
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=115.64 Aligned_cols=83 Identities=24% Similarity=0.451 Sum_probs=74.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
...+.++|||+|||.++++++|+++|+ .||.| .++.+ .+++++|||||+|.+.++|++|++.|++..|.++.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999995 89976 56666 67899999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
+++.++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99988754
No 297
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=3.9e-15 Score=116.23 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|.+|.+++ +||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~ 76 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLE--GENIE 76 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEET--TEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccC--CCEEE
Confidence 345689999999999999999999999999999999863 59999999999999999999999885 57888
Q ss_pred ccccccCCCC
Q 013141 191 LNWATFSGSD 200 (449)
Q Consensus 191 ~~~~~~~~~~ 200 (449)
|.++......
T Consensus 77 v~~a~~~~~~ 86 (103)
T 2dgu_A 77 IVFAKPPDQK 86 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCccc
Confidence 8888765443
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1.6e-15 Score=121.78 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcE--EEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~ 189 (449)
....++|||+|||+++|+++|+++|+.| .|+ +|+|+.++. |+++|||||+|.+.++|++||+. ++..|. ++.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~--gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIG--HRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBT--TBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEEC--CEEE
Confidence 3567899999999999999999999999 677 999999986 99999999999999999999974 667774 4566
Q ss_pred cccccc
Q 013141 190 RLNWAT 195 (449)
Q Consensus 190 ~~~~~~ 195 (449)
+|..+.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 665553
No 299
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.7e-15 Score=120.42 Aligned_cols=79 Identities=24% Similarity=0.465 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGN 403 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~ 403 (449)
....++|||+|+ ++++++|+++|+.||.|.+|.+..++++|||+|.+.++|.+|++.||+..|.|+.|+|.|++....
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 456789999996 699999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 013141 404 K 404 (449)
Q Consensus 404 ~ 404 (449)
.
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=7.7e-15 Score=117.18 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=70.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccE-EEEEEccHHHHHHHHHHhcCCCCCCCCCcccccc
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~~ 193 (449)
...|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|++..|.+..+.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 344689999999999999999999999999999752 276 9999999999999999999999988778999999
Q ss_pred cccCCC
Q 013141 194 ATFSGS 199 (449)
Q Consensus 194 ~~~~~~ 199 (449)
++....
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 986643
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=2.2e-15 Score=135.01 Aligned_cols=82 Identities=17% Similarity=0.280 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..++|||+||++++|+++|+++|+ .|| .|.+|+|++++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999995 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 013141 285 VATPK 289 (449)
Q Consensus 285 ~~~~~ 289 (449)
++...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 99764
No 302
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.2e-15 Score=115.74 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-----cc
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-----RP 280 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 280 (449)
...++|||+|||+++|+++|+++|+ .||.|..+.++.+ |||||+|.+.++|++||+.||+..|.+ +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4578999999999999999999995 9999999999876 799999999999999999999999999 99
Q ss_pred eEEeecCCCCCC
Q 013141 281 MRIDVATPKKAS 292 (449)
Q Consensus 281 i~v~~~~~~~~~ 292 (449)
|+|+++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886543
No 303
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=122.46 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCc----EEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~ 188 (449)
...++|||+|||+++|+++|+++|+.||.| .+|.|+.++ +|+++|||||+|.+.++|++||+. ++..|.+ +.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g--R~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK--RY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS--CE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC--eE
Confidence 457899999999999999999999999975 689999984 899999999999999999999975 8877754 45
Q ss_pred cccccc
Q 013141 189 FRLNWA 194 (449)
Q Consensus 189 ~~~~~~ 194 (449)
|+|..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 555433
No 304
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=113.07 Aligned_cols=74 Identities=20% Similarity=0.399 Sum_probs=67.6
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-c
Q 013141 208 DLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-P 280 (449)
Q Consensus 208 ~~~l~v~~lp~~~------t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~ 280 (449)
+++|||+|||.++ ++++|+++|+ .||.|.++.+. +.+++++|||||+|.+.++|.+|++.|||..+.|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 7799999995 99999999987 36789999999999999999999999999999999 8
Q ss_pred eEEe
Q 013141 281 MRID 284 (449)
Q Consensus 281 i~v~ 284 (449)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8763
No 305
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-16 Score=120.65 Aligned_cols=85 Identities=16% Similarity=0.452 Sum_probs=76.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||.++|+++|+++|+ .||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..|.|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 34678999999999999999999995 9999988 667777788999999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++..+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99887543
No 306
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=2.6e-15 Score=120.31 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccE-EEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
....|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|++|++.|||..+.+..+.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 44568899999999999999999999999999988753 477 999999999999999999999998777899999
Q ss_pred ccccCCCCC
Q 013141 193 WATFSGSDR 201 (449)
Q Consensus 193 ~~~~~~~~~ 201 (449)
|++.....-
T Consensus 102 ~ak~~~l~v 110 (130)
T 3zzy_A 102 FSKLTSLNV 110 (130)
T ss_dssp ECSCSSCCC
T ss_pred ecCCCceeE
Confidence 998765433
No 307
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=122.62 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=76.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||+++|+++|+++|+ .||.|..+.++.+..+++++|||||+|.+.++|++||+ |++..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34568999999999999999999995 99999987777777889999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 013141 285 VATPKK 290 (449)
Q Consensus 285 ~~~~~~ 290 (449)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 308
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=3.6e-15 Score=117.17 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
...++|||+|||+++++++|+++|+ .|| +|..+.+..+ .++|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567999999999999999999995 999 8999988533 478999999999999999999999999999999999
Q ss_pred ecCCC
Q 013141 285 VATPK 289 (449)
Q Consensus 285 ~~~~~ 289 (449)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98765
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-16 Score=127.95 Aligned_cols=85 Identities=19% Similarity=0.381 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEE--------EEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~ 183 (449)
..+.++|||+|||+++++++|+++|+.||.|.+ |.++.++.+++++|||||+|.+.++|.+|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457889999999999999999999999999999 999999888999999999999999999999999999885
Q ss_pred CCCCcccccccccCC
Q 013141 184 NTDQPFRLNWATFSG 198 (449)
Q Consensus 184 ~~~~~~~~~~~~~~~ 198 (449)
++.|+|.++....
T Consensus 84 --g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 --GNPIKVSFATRRA 96 (116)
Confidence 5678888876543
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.1e-15 Score=115.13 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++++++|+++|+ .||.|.++.+. +++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4468999999999999999999995 99999999987 3478999999999999999999999999999999999
Q ss_pred cCCC
Q 013141 286 ATPK 289 (449)
Q Consensus 286 ~~~~ 289 (449)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8763
No 311
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-15 Score=116.42 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=73.5
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCc
Q 013141 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (449)
Q Consensus 209 ~~l~v~~l----p~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~ 274 (449)
+.|||+|| |+++++++|+++|+ .||+|.++.++.|+.||+++|||||+|.+ +++ |.+|++ .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 99999999999996 99999999999999999999999999996 323 788888 78999
Q ss_pred eecCcceEEeecCCCCC
Q 013141 275 YCSSRPMRIDVATPKKA 291 (449)
Q Consensus 275 ~~~g~~i~v~~~~~~~~ 291 (449)
.|+|+.|+|.+.+....
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999998877543
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.58 E-value=1.3e-15 Score=111.48 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 210 ~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
+|||+|||.++++++|+++|+ .||.|.++.+++++.++.++|||||+|.+.++|++|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999995 99999999999999999999999999999999999996 5889999999999875
No 313
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=110.05 Aligned_cols=80 Identities=18% Similarity=0.417 Sum_probs=72.9
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
.....++|||+|||.++++++|+++|+ .||.|..+.+++ +||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345678999999999999999999995 999999999873 39999999999999999999999999999999
Q ss_pred eecCCCCCC
Q 013141 284 DVATPKKAS 292 (449)
Q Consensus 284 ~~~~~~~~~ 292 (449)
+++.++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999887553
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=5.1e-15 Score=127.13 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
.....++|||+|||+++++++|+++|+.||.|++|.|+.++ +++++|||||+|.+.++|.+|++.|++..+. ++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD--GRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS--SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC--CEEEE
Confidence 34567899999999999999999999999999999999998 8999999999999999999999999999885 47788
Q ss_pred cccccc
Q 013141 191 LNWATF 196 (449)
Q Consensus 191 ~~~~~~ 196 (449)
|.|+..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 887753
No 315
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=109.45 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=70.6
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcceE
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMR 282 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~ 282 (449)
.....++|||+|||.++++++|+++|+ .||.|..+.++++ +|+|||+|.+.++|.+|++.| ++..+.|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 345678999999999999999999995 9999999999864 789999999999999999989 99999999999
Q ss_pred EeecC
Q 013141 283 IDVAT 287 (449)
Q Consensus 283 v~~~~ 287 (449)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 316
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.2e-15 Score=115.36 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=74.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||.++++++|+++|+ .||.|..|.++++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45678999999999999999999995 9999999999876 7899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99887653
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=9.3e-16 Score=119.60 Aligned_cols=81 Identities=32% Similarity=0.532 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +++++|||||+|.+.++|++|++ ++..+. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~--g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFH--GKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEET--TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeEC--CEEEEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999997 666664 456666
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 666533
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=119.91 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=75.0
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||.++|+++|+++|+ .||.|..+.+..+..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999995 99999544333332378899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=3.9e-15 Score=112.42 Aligned_cols=71 Identities=20% Similarity=0.453 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhcccc----C-------ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 394 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 394 (449)
..++|||+|||+++++++|+++|+.| | .|.++.+.+++++|||+|.+.++|.+|+ .||+..|.|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 46899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEe
Q 013141 395 LSW 397 (449)
Q Consensus 395 v~~ 397 (449)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 973
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=8e-15 Score=112.84 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccc
Q 013141 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (449)
Q Consensus 112 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~ 190 (449)
..+.++|||+|||+ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|++.|++..+. ++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF--GKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB--TTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 45789999999998 99999999999999999999984 579999999999999999999999985 57778
Q ss_pred ccccccCC
Q 013141 191 LNWATFSG 198 (449)
Q Consensus 191 ~~~~~~~~ 198 (449)
|.++....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 88876543
No 321
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.1e-14 Score=114.52 Aligned_cols=80 Identities=24% Similarity=0.481 Sum_probs=72.3
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
......++|||+|||.++++++|+++|+ .||.|..+.++ +|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456678999999999999999999995 99999999987 68999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 013141 283 IDVATPKKA 291 (449)
Q Consensus 283 v~~~~~~~~ 291 (449)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999988654
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=110.92 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
....++|||+|||+++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ |++..+.+ +.|+|
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g--~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG--HRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT--EECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC--EEEEE
Confidence 3467899999999999999999999999999987 56655555 99999999999999998 99999854 66777
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++...
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 776544
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-14 Score=110.71 Aligned_cols=80 Identities=23% Similarity=0.471 Sum_probs=72.2
Q ss_pred cccCCCceEEEcCCCCCCCHHHHHHHHhhhC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~--g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
....+.++|||+|||+++|+++|+++|+ .| |.|..+.+. +|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445678999999999999999999995 99 999988764 569999999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 013141 281 MRIDVATPKKA 291 (449)
Q Consensus 281 i~v~~~~~~~~ 291 (449)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999988754
No 324
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.2e-15 Score=112.42 Aligned_cols=77 Identities=30% Similarity=0.500 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC-CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNK 404 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 404 (449)
..++|||+|||.++++++|+++|+.||.|.+|.|+++ +++|||+|.+.++|++|+. ....+.++.|+|.|++++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 4689999999999999999999999999999999865 8999999999999975432 123458999999999886543
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=1.8e-14 Score=110.91 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=70.7
Q ss_pred cccCCCceEEEcCCCC-CCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 203 TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 203 ~~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
....+.++|||+|||. ++++++|+++|+ .||.|..+.+. +|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3455778999999998 999999999995 99999999883 7899999999999999999999999999999
Q ss_pred EEeecCCC
Q 013141 282 RIDVATPK 289 (449)
Q Consensus 282 ~v~~~~~~ 289 (449)
+|+++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998765
No 326
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-14 Score=105.99 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhhcc-CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCC
Q 013141 113 DETKT-IWIGDLFHWMDETF----LHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (449)
Q Consensus 113 ~~~~~-l~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~ 186 (449)
.++.| |||+|||+++++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|++.|++..+ .+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~g 73 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FG 73 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CC
Confidence 34556 99999999999988 55899999 599988 23 8999999999999999999999999 56
Q ss_pred CcccccccccCCCCC
Q 013141 187 QPFRLNWATFSGSDR 201 (449)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (449)
++|++.+++...+..
T Consensus 74 r~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 74 NRIIVSFTPKNRELC 88 (96)
T ss_dssp SCCEEESSCCSCCCC
T ss_pred ceEEEEecCCCccee
Confidence 889999988665443
No 327
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=109.88 Aligned_cols=77 Identities=31% Similarity=0.501 Sum_probs=62.8
Q ss_pred CCCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeC-CCcEEEEEecCHHHHHHHHHHhcCCee--CCeEEEEEecC
Q 013141 323 GESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSWGR 399 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~-~~g~afV~F~~~~~A~~A~~~l~g~~~--~g~~l~v~~~~ 399 (449)
.....++|||+|||+++|+++|+++|++||.|.+|.|++ ++|+|||+|.+.++|.+ |++..+ .|+.|.|.+++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 345678999999999999999999999999999999987 48999999999999883 566654 59999999998
Q ss_pred CCCC
Q 013141 400 NPGN 403 (449)
Q Consensus 400 ~~~~ 403 (449)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7643
No 328
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=118.15 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=76.7
Q ss_pred ccCCCceEEEcCCCCCCCHHHHHHHHhhhCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
.....++|||+|||+++|+++|+++|+ .||. |..|.+++++. ++++|||||+|.+.++|++||+ +++..++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345678999999999999999999995 9888 89999999977 9999999999999999999998 9999999999
Q ss_pred eEEeecCCCC
Q 013141 281 MRIDVATPKK 290 (449)
Q Consensus 281 i~v~~~~~~~ 290 (449)
|+|.++.++.
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 329
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=115.55 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=66.2
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCC---CCCCC
Q 013141 113 DETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTDQ 187 (449)
Q Consensus 113 ~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~---~~~~~ 187 (449)
.++++||| +||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.||+..+ .+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 46789999 779999999999999999999999987643 58999999999999999999999865 33466
Q ss_pred cccccccc
Q 013141 188 PFRLNWAT 195 (449)
Q Consensus 188 ~~~~~~~~ 195 (449)
++.+.++.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 77776665
No 330
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=2.3e-14 Score=113.22 Aligned_cols=78 Identities=31% Similarity=0.529 Sum_probs=71.2
Q ss_pred cCCCceEEEcCCCCC-CCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 013141 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~-~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 283 (449)
....++|||+|||++ +++++|+++|+ .||.|..+.+ ++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 99999999995 9999999988 4789999999999999999999999999999999
Q ss_pred eecCCCCC
Q 013141 284 DVATPKKA 291 (449)
Q Consensus 284 ~~~~~~~~ 291 (449)
+++.....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99986543
No 331
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.9e-15 Score=118.20 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v----~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
....+|||+|||+++|+++|+++|+ .||.| ..|.|+++ .+++++|||||+|.+.++|++||+. ++..|.++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567999999999999999999995 99875 68999998 5799999999999999999999975 9999999999
Q ss_pred EEeecCCC
Q 013141 282 RIDVATPK 289 (449)
Q Consensus 282 ~v~~~~~~ 289 (449)
+|..+..+
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988654
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=7.2e-15 Score=113.39 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=75.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHH----HHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
..+.++|||+|||.++++++|+ ++|+ .||.|..+.+.+ ++.++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3567899999999999999999 9995 999999998874 4678899999999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 013141 281 MRIDVATPKKA 291 (449)
Q Consensus 281 i~v~~~~~~~~ 291 (449)
|+|+++.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999988654
No 333
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=111.50 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEE-EEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
...++|||+|||+++++++|+++|+.||.|.+| .++.++.++ .|||+|.+.++|.+|++.|++..+. ++.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~--g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLE--NFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCS--SCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEEC--CcEEEE
Confidence 457899999999999999999999999999999 488776543 4999999999999999999999995 577888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 887654
No 334
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=8e-15 Score=112.90 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=72.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|||.++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34678999999999999999999995 89887766 2568899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987654
No 335
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7.4e-15 Score=116.85 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCC---CCcccEEEEEEccHHHHHHHHHHh
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSY 177 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l 177 (449)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 5679999999999999999999999999999 888888777 799999999999999999999988
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=124.58 Aligned_cols=85 Identities=28% Similarity=0.436 Sum_probs=79.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||+++++++|+++|+ .||.|..|.++.+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999995 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9977543
No 337
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=108.94 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=71.8
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
....++|||+|||.++|+++|+++|+ .||.|..+.+++ +||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999995 999999999973 399999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9988754
No 338
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=4.7e-15 Score=112.20 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCcccc
Q 013141 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (449)
Q Consensus 112 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~ 191 (449)
.....+|||+|||+++|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|++ +++..+.+.++.+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 457889999999999999999999999999999999874 67999999999999983 466666667788888
Q ss_pred cccccC
Q 013141 192 NWATFS 197 (449)
Q Consensus 192 ~~~~~~ 197 (449)
.++.+.
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 887643
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.6e-15 Score=117.79 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=64.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEcc----HHH----HHHHHH--HhcCCC
Q 013141 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (449)
Q Consensus 116 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~----~~~----A~~Al~--~l~~~~ 181 (449)
..|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888887 678888
Q ss_pred CCCCCCccccc
Q 013141 182 MPNTDQPFRLN 192 (449)
Q Consensus 182 ~~~~~~~~~~~ 192 (449)
+.+ +.++|.
T Consensus 83 I~G--r~irV~ 91 (136)
T 2j8a_A 83 IMG--FKFEVI 91 (136)
T ss_dssp ETT--EEEEEE
T ss_pred ecC--cEEEEE
Confidence 855 444443
No 340
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=5.5e-15 Score=131.57 Aligned_cols=82 Identities=24% Similarity=0.534 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCC---------CHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCee------
Q 013141 324 ESNNATIFVGALDSDV---------SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI------ 388 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~------ 388 (449)
....++|||+||+..+ ++++|+++|++||.|.+|+|+.++|+|||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3467899999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEEEEEecCCCCCCC
Q 013141 389 ------GKQTVRLSWGRNPGNKQ 405 (449)
Q Consensus 389 ------~g~~l~v~~~~~~~~~~ 405 (449)
.|+.|.|.|++...+..
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TGGGGGGSCCCEEEECC------
T ss_pred cccccCCCCEEEEEEccCCCCHH
Confidence 89999999999866543
No 341
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=7.4e-15 Score=117.85 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=72.5
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~--~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
....++|||+|||+++|+++|+++|+ .| .|. +|+|++++. ++++|||||+|.+.++|++||+ +++..|.|+.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567999999999999999999995 89 677 899999977 9999999999999999999997 577999999999
Q ss_pred EeecCCC
Q 013141 283 IDVATPK 289 (449)
Q Consensus 283 v~~~~~~ 289 (449)
|..+..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9888654
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=6.6e-15 Score=114.72 Aligned_cols=82 Identities=27% Similarity=0.524 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 285 (449)
...++|||+|||.++++++|+++|+ .||.|..+.++.+. ++.++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3567999999999999999999995 99999999999997 89999999999999999999997 99999999999999
Q ss_pred cCCCCC
Q 013141 286 ATPKKA 291 (449)
Q Consensus 286 ~~~~~~ 291 (449)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876643
No 343
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=110.48 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceecCcceEE
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRI 283 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~-v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v 283 (449)
...++|||+|||.++|+++|+++|+ .||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4567999999999999999999995 9999 6666553 478999999999999999999999 9999999999
Q ss_pred eecCCCCCC
Q 013141 284 DVATPKKAS 292 (449)
Q Consensus 284 ~~~~~~~~~ 292 (449)
+++.++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887554
No 344
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=114.37 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||+|||+++++++|+++|+ .||.|..|.+++ +++||||+|.+.++|++|++.||+..+.|+.|.|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467999999999999999999995 999999998864 4789999999999999999999999999999999999
Q ss_pred CCCC
Q 013141 287 TPKK 290 (449)
Q Consensus 287 ~~~~ 290 (449)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7654
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=120.20 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEE--------EEEe---CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILS--------VKIP---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQT 392 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 392 (449)
....++|||+|||+.+++++|+++|+.||.|.. +.+. ..+|+|||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 445789999999999999999999999998876 3333 35799999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 013141 393 VRLSWGRNPGNK 404 (449)
Q Consensus 393 l~v~~~~~~~~~ 404 (449)
|+|.|++....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999875443
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=2.5e-14 Score=108.08 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 013141 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (449)
Q Consensus 207 ~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 286 (449)
..++|||+|||+++++++|+++|+ .| .|.++.+. +++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 567999999999999999999995 89 99999884 56899999999999999999999999999999999998
Q ss_pred CCCC
Q 013141 287 TPKK 290 (449)
Q Consensus 287 ~~~~ 290 (449)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6653
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=5.8e-14 Score=109.28 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCC-----CCCHhHHHhhccccCceEEEEEeCC-------CcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 013141 325 SNNATIFVGALDS-----DVSDEDLREPFSQFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQT 392 (449)
Q Consensus 325 ~~~~~l~V~nlp~-----~~t~~~L~~~f~~~G~v~~v~i~~~-------~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 392 (449)
..+++|+|.||.. +.++++|+++|++||.|.+|.|+++ +|+|||+|.+.++|.+|++.|||+.|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 2378999999999999999999752 689999999999999999999999999999
Q ss_pred EEEEecCC
Q 013141 393 VRLSWGRN 400 (449)
Q Consensus 393 l~v~~~~~ 400 (449)
|+|.|++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999874
No 348
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-13 Score=105.47 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.2
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|| ++|+++|+++|+ .||.|..|.+. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 446789999996 899999999995 99999999884 458899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 013141 285 VATPKKAS 292 (449)
Q Consensus 285 ~~~~~~~~ 292 (449)
++.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99887543
No 349
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-13 Score=107.79 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HhHHHhhccccCceEEEEEeC--CCcEEEEEecCHHHHHHHHHHhcCCeeC
Q 013141 323 GESNNATIFVGALDSDVS-----------DEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIG 389 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~~t-----------~~~L~~~f~~~G~v~~v~i~~--~~g~afV~F~~~~~A~~A~~~l~g~~~~ 389 (449)
....+++|+|.||....+ +++|+++|++||.|.+|.|.. .+|+|||+|.+.++|.+|++.|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445689999999954432 589999999999999997753 4799999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q 013141 390 KQTVRLSWGRNPGN 403 (449)
Q Consensus 390 g~~l~v~~~~~~~~ 403 (449)
|+.|+|.|+++...
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987543
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=120.21 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=73.6
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEE--------EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA--------KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i--------~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
..++++|||+|||+++|+++|+++|+ .||.|..+ .+. .++.++|||||+|.+.++|.+|++.||+..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 45678999999999999999999995 99998764 333 4588999999999999999999999999999
Q ss_pred cCcceEEeecCCCCCC
Q 013141 277 SSRPMRIDVATPKKAS 292 (449)
Q Consensus 277 ~g~~i~v~~~~~~~~~ 292 (449)
.|+.|.|.++.....+
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999876543
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=2.2e-13 Score=106.00 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=73.5
Q ss_pred cCCCceEEEcCCCC-----CCCHHHHHHHHhhhCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 205 ACSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 205 ~~~~~~l~v~~lp~-----~~t~~~l~~~f~~~~g~v~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
..++++|+|.|+.. +-++++|+++|+ +||.|.++.+++++.+ ++++|++||+|.+.++|.+|++.|||+.+.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35678999999962 237899999995 9999999999998654 6889999999999999999999999999999
Q ss_pred cceEEeecCCC
Q 013141 279 RPMRIDVATPK 289 (449)
Q Consensus 279 ~~i~v~~~~~~ 289 (449)
+.|.|.++...
T Consensus 84 r~i~v~~a~~~ 94 (105)
T 2pe8_A 84 RVVKACFYNLD 94 (105)
T ss_dssp EECEEEECCHH
T ss_pred cEEEEEEcCHH
Confidence 99999998653
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.48 E-value=6.3e-14 Score=111.54 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc-----
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP----- 280 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~----- 280 (449)
...++|||+|||+++++++|+++|. .||+|..+.++.+ |||||+|.+.++|++||+.||+..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 3467999999999999999999995 9999999999765 79999999999999999999999999998
Q ss_pred eEEeecCCCC
Q 013141 281 MRIDVATPKK 290 (449)
Q Consensus 281 i~v~~~~~~~ 290 (449)
|+|..+.+..
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777666543
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.3e-14 Score=110.43 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 282 (449)
...++|||+|||+++|+++|+++|+ .||.|. +.++.+..+ ++++|||||+|.+.++|++||+.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 4568999999999999999999995 999999 888888776 7999999999999999999999883 35666666
Q ss_pred EeecC
Q 013141 283 IDVAT 287 (449)
Q Consensus 283 v~~~~ 287 (449)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 55443
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.2e-14 Score=106.90 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCCccccc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~~~~~~ 192 (449)
..+++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++| ++..+...++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 46799999999999999999999999999999999865 579999999999999754 444555567888888
Q ss_pred ccccCCC
Q 013141 193 WATFSGS 199 (449)
Q Consensus 193 ~~~~~~~ 199 (449)
++.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8875543
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=2e-13 Score=118.92 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHh--cCCCCCCCCCcccccccccCCCCC--ccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEE
Q 013141 166 SRAAAEKVLQSY--SGSLMPNTDQPFRLNWATFSGSDR--RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (449)
Q Consensus 166 ~~~~A~~Al~~l--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~ 241 (449)
+.+.+..|++.. ....+......++.....+.+... .......++|||+|||+++|+++|+++|+ .||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEEEE
Confidence 667788888655 222333333333322111110000 01223468999999999999999999995 9999999999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 013141 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (449)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 290 (449)
+++. ++.++|||||+|.+.++|.+|++.++ ..+.|+.|+|.+.....
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDYF 188 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC-
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHHH
Confidence 9985 48999999999999999999997654 58999999999987653
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.7e-13 Score=103.27 Aligned_cols=72 Identities=21% Similarity=0.455 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~----g-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 274 (449)
.+.++|||+|||+++++++|+++|+ .| | .|.++.+.++ +|||||+|.+.++|.+|+ .|++.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3568999999999999999999995 88 8 8999988754 789999999999999999 99999
Q ss_pred eecCcceEEee
Q 013141 275 YCSSRPMRIDV 285 (449)
Q Consensus 275 ~~~g~~i~v~~ 285 (449)
.+.|+.|+|++
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999975
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.45 E-value=6.4e-13 Score=115.74 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHh--CCceecCcceEEeecCCCCCCchhhcchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEcCCCC
Q 013141 260 DENERSRAMTEM--NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDS 337 (449)
Q Consensus 260 ~~~~A~~A~~~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~ 337 (449)
+.+....|++.. ....+.+....|............... ......++|||+|||.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~-----------------------~~~~~~~~l~V~nLp~ 119 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEY-----------------------KNDVKNRSVYIKGFPT 119 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHH-----------------------HHHHHHTEEEEECCCT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhh-----------------------hhccccCEEEecCCCC
Confidence 567777888766 555666666666555221111000000 0012357899999999
Q ss_pred CCCHhHHHhhccccCceEEEEEeC-----CCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 338 DVSDEDLREPFSQFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 338 ~~t~~~L~~~f~~~G~v~~v~i~~-----~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
++++++|+++|+.||.|.+|+|++ .+|+|||+|.+.++|.+|++.++ ..|+|+.|+|.|++.
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 999999999999999999999986 36999999999999999997654 599999999999876
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2.7e-13 Score=105.56 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=66.5
Q ss_pred CCCcEEEEcCC--CCCCC--------HhHHHhhccccCceEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCC
Q 013141 325 SNNATIFVGAL--DSDVS--------DEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGT 386 (449)
Q Consensus 325 ~~~~~l~V~nl--p~~~t--------~~~L~~~f~~~G~v~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~ 386 (449)
.++++|.|.|+ +..+. +++|+++|++||.|.+|.|+++ +|++||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33333 3789999999999999999853 699999999999999999999999
Q ss_pred eeCCeEEEEEecCC
Q 013141 387 AIGKQTVRLSWGRN 400 (449)
Q Consensus 387 ~~~g~~l~v~~~~~ 400 (449)
.|+|+.|+|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999764
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=4.9e-13 Score=107.14 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=70.7
Q ss_pred cCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 013141 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 284 (449)
..+.++|||+|| ++|+++|+++|+ .||.|.+|.+. .++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456789999996 699999999995 99999999985 458899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 013141 285 VATPKKA 291 (449)
Q Consensus 285 ~~~~~~~ 291 (449)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9988754
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-12 Score=99.80 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=64.2
Q ss_pred CcEEEEcCCC-------CCCCHhHHHhhccccCceEEEEEe-CCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 013141 327 NATIFVGALD-------SDVSDEDLREPFSQFGEILSVKIP-VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWG 398 (449)
Q Consensus 327 ~~~l~V~nlp-------~~~t~~~L~~~f~~~G~v~~v~i~-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~ 398 (449)
..+|.|.-.. ..+++++|+++|++||.|.+|.|+ +.+|+|||+|.+.++|.+|++.+++ +.++.|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566666554 458999999999999999999998 4689999999999999999997544 68999999999
Q ss_pred CCCCCC
Q 013141 399 RNPGNK 404 (449)
Q Consensus 399 ~~~~~~ 404 (449)
+++...
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 987543
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=8.5e-13 Score=104.70 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCC--C---CCHhHHHhhccccCceEEEEEeCC----------CcEEEEEecCHHHHHHHHHHhcCCeeCC
Q 013141 326 NNATIFVGALDS--D---VSDEDLREPFSQFGEILSVKIPVG----------KGCGFVQFANRKDAEVALQKLQGTAIGK 390 (449)
Q Consensus 326 ~~~~l~V~nlp~--~---~t~~~L~~~f~~~G~v~~v~i~~~----------~g~afV~F~~~~~A~~A~~~l~g~~~~g 390 (449)
++++|+|.|+-. + -.++||+++|++||.|.+|.|+++ +|++||+|.+.++|.+|++.|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999942 2 246899999999999999999863 3799999999999999999999999999
Q ss_pred eEEEEEecCC
Q 013141 391 QTVRLSWGRN 400 (449)
Q Consensus 391 ~~l~v~~~~~ 400 (449)
+.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999764
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=1.2e-12 Score=116.56 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=70.7
Q ss_pred cCCCceEEEcCCCCCC---------CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 205 ACSDLSIFVGDLAPDV---------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 205 ~~~~~~l~v~~lp~~~---------t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
....++|||+||+.++ ++++|+++|+ .||+|.+|+++.+ +|||||+|.+.++|+.|++.|++..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 7999999995 9999999999853 7899999999999999999999999
Q ss_pred e------------cCcceEEeecCCCCC
Q 013141 276 C------------SSRPMRIDVATPKKA 291 (449)
Q Consensus 276 ~------------~g~~i~v~~~~~~~~ 291 (449)
| .|+.|.|.|+.....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987654
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=2.6e-12 Score=101.13 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCCcEEEEcCCCCCC----------CHhHHHhhccccCceEEEEEeCC--CcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 013141 325 SNNATIFVGALDSDV----------SDEDLREPFSQFGEILSVKIPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQT 392 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~----------t~~~L~~~f~~~G~v~~v~i~~~--~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 392 (449)
.++++|.|.|+=... .++||+++|++||.|.+|.|.++ +|++||+|.+.++|.+|++.|||+.|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457889999984322 23688999999999999999875 699999999999999999999999999999
Q ss_pred EEEEecC
Q 013141 393 VRLSWGR 399 (449)
Q Consensus 393 l~v~~~~ 399 (449)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.8e-12 Score=99.19 Aligned_cols=83 Identities=13% Similarity=0.246 Sum_probs=70.5
Q ss_pred ccCCCceEEEcCCCCCCC-----------HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 013141 204 EACSDLSIFVGDLAPDVT-----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (449)
Q Consensus 204 ~~~~~~~l~v~~lp~~~t-----------~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 272 (449)
...++++|+|.||....+ +++|+++|+ .||.|.++.+ .+. .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 445788999999944332 579999995 9999999965 553 379999999999999999999999
Q ss_pred CceecCcceEEeecCCCCC
Q 013141 273 GVYCSSRPMRIDVATPKKA 291 (449)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~ 291 (449)
|..|.|+.|+|.++.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999987644
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=1.9e-12 Score=121.56 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcC--CCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeC---Ce--EEEE
Q 013141 323 GESNNATIFVGA--LDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG---KQ--TVRL 395 (449)
Q Consensus 323 ~~~~~~~l~V~n--lp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~--~l~v 395 (449)
...++.+|||+| |+..+|+++|+++|++||.|.+|.+.++|+||||+|.+.++|++|++.|||+.+- |+ .|.|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 356678999999 5789999999999999999999999999999999999999999999999999883 44 6888
Q ss_pred EecC
Q 013141 396 SWGR 399 (449)
Q Consensus 396 ~~~~ 399 (449)
.|..
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8885
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=3.1e-12 Score=99.53 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=70.9
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhhhCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 206 CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 206 ~~~~~l~v~~l--p~~~t--------~~~l~~~f~~~~g~v~~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
.+++.|.|.|+ +.++. +++|++.|+ +||.|.+|.++++..+ ++++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35678899987 33333 368999996 9999999999988654 46899999999999999999999999
Q ss_pred ceecCcceEEeecCCC
Q 013141 274 VYCSSRPMRIDVATPK 289 (449)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (449)
+.+.||.|+|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998654
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=5.9e-12 Score=99.84 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHHhhhCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 013141 207 SDLSIFVGDLAP--DV---TDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (449)
Q Consensus 207 ~~~~l~v~~lp~--~~---t~~~l~~~f~~~~g~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 277 (449)
++++|+|.|+-. ++ .+++|++.|+ +||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|||+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 577899999832 22 3689999995 999999999998864 4577899999999999999999999999999
Q ss_pred CcceEEeecCC
Q 013141 278 SRPMRIDVATP 288 (449)
Q Consensus 278 g~~i~v~~~~~ 288 (449)
||.|+|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-11 Score=93.36 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCceEEEcCCC-------CCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCC
Q 013141 113 DETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (449)
Q Consensus 113 ~~~~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~ 185 (449)
...++|.|.-.. .++++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ + .
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~ 78 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--V 78 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--S
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--C
Confidence 346788888765 458999999999999999999987 36789999999999999999987544 2 4
Q ss_pred CCcccccccccCC
Q 013141 186 DQPFRLNWATFSG 198 (449)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (449)
.++|+|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 6788999987554
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=7.3e-13 Score=102.96 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=57.4
Q ss_pred EcCCCCCCCHhHHHhhc------------cccCceEEEEEeCC-----CcEEEEEecCHHHHHHHHHHhcCCeeCCeEEE
Q 013141 332 VGALDSDVSDEDLREPF------------SQFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 394 (449)
Q Consensus 332 V~nlp~~~t~~~L~~~f------------~~~G~v~~v~i~~~-----~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 394 (449)
+.+|+..+++++|+++| ++||.|.+|.|+++ +|+|||+|.+.++|.+|++.|||+.|.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666666665555 99999999999864 69999999999999999999999999999999
Q ss_pred EEec
Q 013141 395 LSWG 398 (449)
Q Consensus 395 v~~~ 398 (449)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.6e-12 Score=101.00 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=62.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 213 v~~lp~~~t~~~l~~~f------------~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
+.+|+..+++++|++.| + +||.|.++.++++.. ++++|||||+|.+.++|.+|++.|||+.+.|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45666667776666555 7 999999999998854 789999999999999999999999999999999
Q ss_pred eEEeec
Q 013141 281 MRIDVA 286 (449)
Q Consensus 281 i~v~~~ 286 (449)
|+|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 371
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.5e-11 Score=96.67 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEcCCCCC-CCHhHHHhhccccCceEEEEEeCCCcEEEEEecC-HHHHHHHHHHh--cCCeeCCeEEEEEe
Q 013141 322 DGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN-RKDAEVALQKL--QGTAIGKQTVRLSW 397 (449)
Q Consensus 322 ~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~-~~~A~~A~~~l--~g~~~~g~~l~v~~ 397 (449)
.....+++|+|+||+.. +++++|+++|+.||.|.+|.+.++..+|||+|.+ .++|..|++.| ++..|.|..++++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 44667899999999999 9999999999999999999999999999999999 89999999999 47789999999886
Q ss_pred cC
Q 013141 398 GR 399 (449)
Q Consensus 398 ~~ 399 (449)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=5.6e-12 Score=118.34 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=65.7
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCC---CC
Q 013141 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP---NT 185 (449)
Q Consensus 111 ~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~---~~ 185 (449)
...++++|||+| |++.+||++|+++|++||.|.+|.+.+ +||||||+|.+.++|++|++.||+..+. ++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356889999999 579999999999999999999987743 4689999999999999999999998773 22
Q ss_pred CCcccccccc
Q 013141 186 DQPFRLNWAT 195 (449)
Q Consensus 186 ~~~~~~~~~~ 195 (449)
..++.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 2356666653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.6e-11 Score=87.22 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCC----CCCH----hHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 325 SNNATIFVGALDS----DVSD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 325 ~~~~~l~V~nlp~----~~t~----~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
++..+|+|.-.+. ...+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+|++ |||..++|+.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 3455677766652 3333 6788999999999999999876 8999999999999998 99999999999999
Q ss_pred ecCCC
Q 013141 397 WGRNP 401 (449)
Q Consensus 397 ~~~~~ 401 (449)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99874
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.12 E-value=2.5e-10 Score=89.72 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 013141 206 CSDLSIFVGDLAPDV----------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~----------t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 275 (449)
.+++.|.|.|+=... .+++|++.|+ +||.|.+|.+.++. ++|++||+|.+.++|.+|++.|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456678888763211 1358899995 99999999987653 48999999999999999999999999
Q ss_pred ecCcceEEeecCCC
Q 013141 276 CSSRPMRIDVATPK 289 (449)
Q Consensus 276 ~~g~~i~v~~~~~~ 289 (449)
++|+.|+|.++...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999998654
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=4.7e-10 Score=82.69 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCC-----CCH----hHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEE
Q 013141 323 GESNNATIFVGALDSD-----VSD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 393 (449)
Q Consensus 323 ~~~~~~~l~V~nlp~~-----~t~----~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 393 (449)
..++..+|+|.-++.+ +.+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+|++ |||..++||.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3455678888877643 222 5688999999999999999776 9999999999999998 99999999999
Q ss_pred EEEecCC
Q 013141 394 RLSWGRN 400 (449)
Q Consensus 394 ~v~~~~~ 400 (449)
+|++..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9998654
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.9e-09 Score=84.73 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=58.3
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEcc-HHHHHHHHHHhcCCCC
Q 013141 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSGSLM 182 (449)
Q Consensus 111 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~-~~~A~~Al~~l~~~~~ 182 (449)
.-...+.|+|+||+++ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.++...+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 3456789999999999 99999999999999999999998864 69999999 8999999999864433
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=7.5e-09 Score=77.58 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhcccc-----CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEE
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQF-----GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 396 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 396 (449)
.+..++|-|-+||..+++..|+.+++++ |.|..|.+..+.+-|+|+|.|...|.+|...|+|.+|.|++|+|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 3457889999999999999999999999 999999999999999999999999999999999999999999996
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-08 Score=74.69 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=60.4
Q ss_pred CCceEEEcCCCC----CC-C---HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 013141 207 SDLSIFVGDLAP----DV-T---DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (449)
Q Consensus 207 ~~~~l~v~~lp~----~~-t---~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 278 (449)
+..+|+|.-.+. ++ + ..+|.+.|+ .||+|..++++.+. +||+|.+.++|.+||+ |+|..++|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 455777765551 22 3 257899996 99999999999763 8999999999999997 99999999
Q ss_pred cceEEeecCCC
Q 013141 279 RPMRIDVATPK 289 (449)
Q Consensus 279 ~~i~v~~~~~~ 289 (449)
|.|+|+.+++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998864
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.5e-08 Score=90.38 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=61.3
Q ss_pred cEEEEcCCC-----CCCCHhHHHhhccccCceEEEEEeC----------CCcEEEEEecCHHHHHHHHHHhcCCeeCCeE
Q 013141 328 ATIFVGALD-----SDVSDEDLREPFSQFGEILSVKIPV----------GKGCGFVQFANRKDAEVALQKLQGTAIGKQT 392 (449)
Q Consensus 328 ~~l~V~nlp-----~~~t~~~L~~~f~~~G~v~~v~i~~----------~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 392 (449)
..+.+.|+- ..-.+++|++.|++||.|.+|.|.+ ++|++||+|.+.++|.+|++.|||+.|.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 445555542 2235688999999999999999973 4689999999999999999999999999999
Q ss_pred EEEEecCC
Q 013141 393 VRLSWGRN 400 (449)
Q Consensus 393 l~v~~~~~ 400 (449)
|+|.|...
T Consensus 205 i~~~~~~~ 212 (222)
T 3dxb_A 205 VVAEVYDQ 212 (222)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999763
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=6.8e-08 Score=86.05 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=60.9
Q ss_pred CCHHHHHHHHhhhCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 013141 220 VTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (449)
Q Consensus 220 ~t~~~l~~~f~~~~g~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 288 (449)
-.+++|++.|+ +||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|+|+.+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35679999996 999999999986644 458999999999999999999999999999999999999864
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1e-07 Score=70.27 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=60.5
Q ss_pred CCCceEEEcCCCCC------CC---HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 013141 206 CSDLSIFVGDLAPD------VT---DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (449)
Q Consensus 206 ~~~~~l~v~~lp~~------~t---~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 276 (449)
.+..+|+|.-++.+ .+ ..+|.+.|. .||+|..+++..++ +||+|.+.++|.+||+ |+|..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 45678888777643 23 257889996 89999999999773 8999999999999997 999999
Q ss_pred cCcceEEeecCC
Q 013141 277 SSRPMRIDVATP 288 (449)
Q Consensus 277 ~g~~i~v~~~~~ 288 (449)
+||.|+|++-.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999987543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.5e-06 Score=64.08 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~-----g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 280 (449)
...++|-+-+||..++...|+.++ +.+ |.+..|.+..|.. -|+|+|.|...|.+|.-.|+|.+|.|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 346789999999999999999999 599 9999999998843 6999999999999999999999999999
Q ss_pred eEEeec
Q 013141 281 MRIDVA 286 (449)
Q Consensus 281 i~v~~~ 286 (449)
|++...
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.05 E-value=8.7e-06 Score=61.07 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCC-CH----hHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 013141 326 NNATIFVGALDSDV-SD----EDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 400 (449)
Q Consensus 326 ~~~~l~V~nlp~~~-t~----~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~~ 400 (449)
..++|+|.||+.++ .. +.++++|..|+.+......++-.-..|.|.+.++|.+|...||+..|.|+.|+|=|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35789999998765 32 56788999999999999999877889999999999999999999999999999999985
Q ss_pred C
Q 013141 401 P 401 (449)
Q Consensus 401 ~ 401 (449)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=5.4e-05 Score=56.48 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-----CCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcCCCCCCCCC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~~~~~~~~~ 187 (449)
...++|.|.|||+++.++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.|+. ..+.|.+ .
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~--~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG--A 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS--S
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC--e
Confidence 457899999999999999999999872 4888888765 2599999999999999954 2444433 3
Q ss_pred cccccccccCCCCCccccCCCceEEEcCCCCCCC
Q 013141 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVT 221 (449)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t 221 (449)
.+.|... ......+|++.+|++.++
T Consensus 75 ~LsV~P~---------~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPA---------PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEEC---------CCCCCCCCCCCSCCCCCC
T ss_pred EEEEEcC---------CCCCcceEeeecCCCCCC
Confidence 4444221 123556889999998775
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00013 Score=54.36 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCCCCCHhHHHhhcccc-----CceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 325 SNNATIFVGALDSDVSDEDLREPFSQF-----GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 325 ~~~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
....+|.|.|||..++++.|.-+|++- |.|.+|.... ..|+|+|.+.+.|++.++. ....|.+..|.|....
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 346899999999999999999999872 6899999876 8999999999999998863 3668889999998755
Q ss_pred CCC
Q 013141 400 NPG 402 (449)
Q Consensus 400 ~~~ 402 (449)
+..
T Consensus 83 ~~~ 85 (104)
T 2dhx_A 83 PRA 85 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.61 E-value=0.0002 Score=52.83 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCC--cccEEEEEEccHHHHHHHHHHhcCCCC
Q 013141 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (449)
Q Consensus 116 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (449)
++|.||+||+.+||+++.+.+..+..+.....+..+.+.+ ...-|||.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5799999999999999999999998877777766654333 234599999999999999999999876
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.54 E-value=0.00027 Score=52.14 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=59.4
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeCCe-----EEE
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGKQ-----TVR 394 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g~-----~l~ 394 (449)
++|.|++||+.+|++++.+.+.....+....+..+ ..-|||.|.+.+++....+.++|..|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57999999999999999999999888877777643 26799999999999999999999988542 334
Q ss_pred EEecC
Q 013141 395 LSWGR 399 (449)
Q Consensus 395 v~~~~ 399 (449)
|+||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 56553
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00025 Score=54.82 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=62.7
Q ss_pred CCCCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCC-eEEEEEecC
Q 013141 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-QTVRLSWGR 399 (449)
Q Consensus 324 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~~l~v~~~~ 399 (449)
....+-|.|.+.|... .+.|..+|++||+|.+...........|+|.++.+|++||. .||..|.+ ..|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3456789999999885 67888999999999999987678899999999999999997 59999985 667777754
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.38 E-value=0.0012 Score=48.65 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhc
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (449)
.....++| ++|++....||.++|+.||. ..|+-+.|. .|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34455667 99999999999999999984 466666663 69999999999999998664
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0011 Score=49.72 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 013141 207 SDLSIFVGDLAPDV-T----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (449)
Q Consensus 207 ~~~~l~v~~lp~~~-t----~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 281 (449)
-.++|+|.||+.++ . .+.++++|. .|+++.....++.- .-..|.|.+.++|.+|...|++..+.|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 45689999998765 2 257789995 99999888777542 246899999999999999999999999999
Q ss_pred EEeecCCC
Q 013141 282 RIDVATPK 289 (449)
Q Consensus 282 ~v~~~~~~ 289 (449)
+|.++.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999854
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.17 E-value=0.0027 Score=46.70 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 384 (449)
...+++| +.|.++...||.++|+.||.| .|..+. ...|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID-DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE-TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 3456666 999999999999999999843 333333 5799999999999999998774
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.12 E-value=0.0013 Score=48.73 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=57.7
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCC--------CcEEEEEecCHHHHHHHHHHhcCCeeCC-----eE
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGK-----QT 392 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~--------~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~ 392 (449)
.+.+|.|+.||+.+|++++.+.+...-.+....+..+ -.-|||.|.+.++.....+.++|..|.+ ..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4678999999999999999999988655544444332 2568999999999999999999998854 24
Q ss_pred EEEEecC
Q 013141 393 VRLSWGR 399 (449)
Q Consensus 393 l~v~~~~ 399 (449)
..|+||-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566653
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.75 E-value=0.001 Score=49.27 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=51.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCC--cccEEEEEEccHHHHHHHHHHhcCCCC
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ--SEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~~~~~ 182 (449)
-+-+|.||.||+.+||+++.+.+..+=.+.....+..+.+-+ ...-|||.|.+.+++....+.+++..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 456899999999999999998888764443333333222221 123489999999999999999999776
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.0025 Score=47.03 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=45.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhc
Q 013141 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (449)
Q Consensus 117 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 178 (449)
.++| ++|++....||.++|+.|| -..|+-+.|. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999998 4567777763 69999999999999998764
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.0027 Score=46.88 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 384 (449)
.+++| +.|.++...||.++|+.||. ..|..+. ...|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999983 3444443 5799999999999999999874
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.70 E-value=0.001 Score=52.04 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEE-EEEeC-------------------CCcEEEEEecCHHHHHHHHHHhcCC
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILS-VKIPV-------------------GKGCGFVQFANRKDAEVALQKLQGT 386 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~-------------------~~g~afV~F~~~~~A~~A~~~l~g~ 386 (449)
..-|.|-+.|.+.+ ..|.+.|++||.|.+ +.+.+ ......|+|++..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45677778866654 667788999999877 22211 35678999999999999996 5999
Q ss_pred eeCCeEEEEEecC
Q 013141 387 AIGKQTVRLSWGR 399 (449)
Q Consensus 387 ~~~g~~l~v~~~~ 399 (449)
.|.|..|-|.+.+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888776
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.18 E-value=0.0022 Score=62.25 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHH
Q 013141 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (449)
Q Consensus 114 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~ 175 (449)
..|+|+|. .|..+++.+|.++|++||+|.++.+.+++. -||.|||.+.+++..+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 34789997 799999999999999999999999887642 499999999999998874
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.15 E-value=0.024 Score=43.70 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cceEEe
Q 013141 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRID 284 (449)
Q Consensus 206 ~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~ 284 (449)
...+-|.|.++|+.. .+.|.+.|. .||+|.+..... ...+-.|.|.+..+|++|+ ..||..|.+ ..|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 346789999999985 667778884 999999887621 2358999999999999999 579999874 556666
Q ss_pred ecCC
Q 013141 285 VATP 288 (449)
Q Consensus 285 ~~~~ 288 (449)
...+
T Consensus 93 p~~d 96 (119)
T 1wwh_A 93 PCID 96 (119)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 6543
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0033 Score=60.98 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=42.2
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCc-EEEEEecCHHHHHHHHH
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG-CGFVQFANRKDAEVALQ 381 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g-~afV~F~~~~~A~~A~~ 381 (449)
.++|+|. .+..+++.+|.++|++||.|.++.+.+++| +|.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 4789997 799999999999999999999999988765 99999999999886653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.48 E-value=0.3 Score=38.19 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEE-Eeec------------CCCC-CcceEEEEEeCCHHHHHHHHHHhCC
Q 013141 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIID------------SNTG-RTKGYGFVRFGDENERSRAMTEMNG 273 (449)
Q Consensus 208 ~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~-~~~~------------~~~~-~~~g~afV~f~~~~~A~~A~~~l~g 273 (449)
..-|.|.+.|++.+ ..+.+.|+ +||.|.+-. ..++ +... ....+..|+|.+..+|.+|| ..||
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred ceEEEEEecCHHHH-HHHHHHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 45688889987654 46677784 899987621 1110 0000 12457899999999999999 6999
Q ss_pred ceecCcceEEeecCC
Q 013141 274 VYCSSRPMRIDVATP 288 (449)
Q Consensus 274 ~~~~g~~i~v~~~~~ 288 (449)
..|.|.-|=|...++
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999998777777654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.57 E-value=1.6 Score=43.12 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=45.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcC
Q 013141 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 115 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
...++|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 4466676 9999999999999999995 456555442 799999999999999988754
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.84 E-value=8.2 Score=27.42 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 013141 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l 383 (449)
..+.|.|-|+|..+-..++.-.....|---++..+ .|.|.|+|.+.++-+.|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHH
Confidence 35778999999998888877666666766667666 578999999999999999988
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.25 E-value=3.6 Score=40.60 Aligned_cols=55 Identities=20% Similarity=0.401 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhc
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 384 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~ 384 (449)
...++|+ +|..+...+|.++|+.||.| +|..+ +...|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566665 88899999999999999954 44443 45789999999999999999885
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=61.12 E-value=41 Score=23.84 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=47.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccHHHHHHHHHHhcC
Q 013141 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (449)
Q Consensus 113 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~~ 179 (449)
...+-|.|-|+|..+-..++.-.....|--.-|..+. |.|.|.|.+.++-..|+.+|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 4678899999999999999888888887655555433 5699999999999999988644
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.92 E-value=15 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCCHhHHHhhccccC-----ceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 013141 338 DVSDEDLREPFSQFG-----EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 399 (449)
Q Consensus 338 ~~t~~~L~~~f~~~G-----~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~~~ 399 (449)
.+...+|..++..-+ .|-.|.+. ..+.||+-.. +.|..+++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 356667776665433 46667776 4578888864 57888999999999999999998765
No 406
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=50.90 E-value=3.2 Score=38.89 Aligned_cols=14 Identities=29% Similarity=0.143 Sum_probs=9.4
Q ss_pred CCCCHhHHHhhccc
Q 013141 337 SDVSDEDLREPFSQ 350 (449)
Q Consensus 337 ~~~t~~~L~~~f~~ 350 (449)
..+++++|+++...
T Consensus 227 ~~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 227 ATVTLELLDELTHE 240 (358)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 35678888777654
No 407
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.06 E-value=33 Score=22.87 Aligned_cols=56 Identities=5% Similarity=0.016 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHh
Q 013141 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 383 (449)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l 383 (449)
..++.|.++.=.--...|.+.+.. ..|..+.+....+.+.|+|++.++...+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 356888888877777888888888 78999988877888999998556666676653
No 408
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=44.40 E-value=80 Score=23.24 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEe----ecCCCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~----~~~~~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.+...|+.-.++.++ ..-..+++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 6678899998887666653332222 22234667788766 7777776655
No 409
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=37.94 E-value=83 Score=23.19 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEE----eecCCCCCcceEEEEEeCCHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKV----IIDSNTGRTKGYGFVRFGDENERSR 266 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~----~~~~~~~~~~g~afV~f~~~~~A~~ 266 (449)
.+.+..+|++.+...|+.-.++.+ ...-..+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567888998888765554322222 222234667788866 788777664
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=37.44 E-value=88 Score=23.27 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEee----cCCCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVII----DSNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~----~~~~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.++..|+.-.++.++. .-..+++.|||.| |+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788899888876666533322222 2234667888876 8888877654
No 411
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=35.55 E-value=52 Score=21.30 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC---HHHHHHHHHH
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN---RKDAEVALQK 382 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~---~~~A~~A~~~ 382 (449)
.++.|.++.-.--...|...+.....|..+.+....+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 356777776665667888888888789999988888899999853 3344445543
No 412
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=34.99 E-value=85 Score=20.57 Aligned_cols=56 Identities=7% Similarity=0.169 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEec----CHHHHHHHHHHh
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFA----NRKDAEVALQKL 383 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~----~~~~A~~A~~~l 383 (449)
.++.|.++.-.--...|...+.....|..+.+....+.+.|+|+ +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 35677777665556778888888777888888877889999995 455666676653
No 413
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=34.77 E-value=20 Score=26.36 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~A 267 (449)
.+.+..+|++.+...|+.-.++.++..-. .+++.|||.| |++.+.|.+.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888888776665544444443322 3556777766 6666655543
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.25 E-value=78 Score=25.82 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=35.6
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCcEEEEEEecCCCCCcccEEEEEEccHH
Q 013141 117 TIWIGDLFH-W--------MDETFLHNCF--SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168 (449)
Q Consensus 117 ~l~v~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~~ 168 (449)
++.|-|+|. . .+..+|++.| ..|.++. |+.+.+. ..+.|++.|+|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 567778886 2 3457899977 9998754 6666654 357899999998754
No 415
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=32.30 E-value=1.1e+02 Score=22.45 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=40.4
Q ss_pred EcCCCCCCCHhHHHhhc-cccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCC
Q 013141 332 VGALDSDVSDEDLREPF-SQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 386 (449)
Q Consensus 332 V~nlp~~~t~~~L~~~f-~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~ 386 (449)
|--++..+..+||.... ..||.-.+++.. .....|-..+-+|-.+|++.|+..
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHccC
Confidence 44556778888877655 457877777776 446789999999999999998654
No 416
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=31.91 E-value=1.7e+02 Score=22.80 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEe----ecCCCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~----~~~~~~~~~g~afV~f~~~~~A~~A 267 (449)
...+..||++.+...|+.-.++.++ ..-..+.+.|||.| |++.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4688999999998777753333332 22234567788877 7888777653
No 417
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=31.68 E-value=39 Score=26.77 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhhhCCCeeEEEEeec----CCCCCcceEEEEEeCCHHHHHHH
Q 013141 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSRA 267 (449)
Q Consensus 218 ~~~t~~~l~~~f~~~~g~v~~i~~~~~----~~~~~~~g~afV~f~~~~~A~~A 267 (449)
...+..||++.+...|+.-.++.++.. -..+.+.|||.| |++.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 467888999888765665333333322 124567788877 7888777654
No 418
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.74 E-value=30 Score=23.08 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=14.3
Q ss_pred CceEEEEEeCCCcEEEEEecCH
Q 013141 352 GEILSVKIPVGKGCGFVQFANR 373 (449)
Q Consensus 352 G~v~~v~i~~~~g~afV~F~~~ 373 (449)
|+|.+|. ..+..|+|.|.|-
T Consensus 28 GtV~kV~--~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETTT
T ss_pred eEEEEEe--cCCcEEEEEEccC
Confidence 5666654 4478999999873
No 419
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=28.62 E-value=68 Score=26.51 Aligned_cols=116 Identities=12% Similarity=-0.078 Sum_probs=58.7
Q ss_pred ceEEEcCCC----CCCCHHHHHHHhhccCCcEEEEEEecCCCCCcccEEEEEEccH---HHHHHHHHHhcCCCCCCCCCc
Q 013141 116 KTIWIGDLF----HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR---AAAEKVLQSYSGSLMPNTDQP 188 (449)
Q Consensus 116 ~~l~v~nLp----~~~t~~~l~~~f~~~G~v~~v~~~~~~~~g~~~g~afV~f~~~---~~A~~Al~~l~~~~~~~~~~~ 188 (449)
..+++|+|. ..+...||+++|...| ..+|+-.-. + +=|-|.+. ++....|+..=...+ +...+
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~--S------GNvvF~s~~~~~~l~~~ie~~l~~~f-g~~v~ 76 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYIN--S------GNIFFTSIDSKAQLVEKLETFFAVHY-PFIQS 76 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETT--T------TEEEEEECSCHHHHHHHHHHHHHHHC-TTCCC
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEe--c------CCEEEecCCCHHHHHHHHHHHHHHhc-CCCCC
Confidence 357788884 5688999999999987 566665553 2 23444432 333333332211111 11122
Q ss_pred ccccccc----cCCCCCccccCCCceEEEcCCCCCCCHHHHHHHHhhhCCCeeEEEE
Q 013141 189 FRLNWAT----FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (449)
Q Consensus 189 ~~~~~~~----~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~~g~v~~i~~ 241 (449)
+-+.... .-...+.........++|.-+....+.+++.+.+...-...+.+.+
T Consensus 77 v~vrs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~ 133 (183)
T 2hiy_A 77 FSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYF 133 (183)
T ss_dssp CEEEEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEE
T ss_pred EEEecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEE
Confidence 2221111 0001111111134577777777788888877766322223455554
No 420
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.54 E-value=1.8e+02 Score=20.85 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=30.5
Q ss_pred HHhhccccCceEEEEEeCCCcEEEEEecCHHHHHHHHHHhcCCe
Q 013141 344 LREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA 387 (449)
Q Consensus 344 L~~~f~~~G~v~~v~i~~~~g~afV~F~~~~~A~~A~~~l~g~~ 387 (449)
|+++-+..| +..|.+..+.+..+|.=.|.+.+.+|++.++..+
T Consensus 37 Ik~I~e~tG-v~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 37 IQQARKVPG-VTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHTSTT-EEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhC-CeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 334444444 3447776666899998889999999999887653
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.36 E-value=1.2e+02 Score=24.62 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=34.6
Q ss_pred cEEEEcCCCCC---------CCHhHHHhhc--cccCceEEEEEeCC---CcEEEEEecCHHH-HHHHH
Q 013141 328 ATIFVGALDSD---------VSDEDLREPF--SQFGEILSVKIPVG---KGCGFVQFANRKD-AEVAL 380 (449)
Q Consensus 328 ~~l~V~nlp~~---------~t~~~L~~~f--~~~G~v~~v~i~~~---~g~afV~F~~~~~-A~~A~ 380 (449)
..+.|-|++.. .+..+|++.| +.|..+.-..+... .|++.|.|...-. -..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 46778888862 2447899977 89977654444432 4789999975433 33344
No 422
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=26.25 E-value=1.2e+02 Score=18.74 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC---HHHHHHHHHHh
Q 013141 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN---RKDAEVALQKL 383 (449)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~---~~~A~~A~~~l 383 (449)
++.|.++.-..-...|...+.....|..+.+....+.+.|+|+. .+...++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHc
Confidence 34555555444457788888887778888888888899999863 34445555543
No 423
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=24.81 E-value=1.3e+02 Score=18.85 Aligned_cols=56 Identities=5% Similarity=0.135 Sum_probs=38.2
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecCH---HHHHHHHHHh
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR---KDAEVALQKL 383 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~~---~~A~~A~~~l 383 (449)
.++.|.++.-..-...|...+.....|.++.+....+.+.|.|+.. +....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc
Confidence 3567777765445567788888777788999888888999999743 3334455543
No 424
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.52 E-value=2e+02 Score=20.38 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=37.2
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEec-CHHHHHHHHHH
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFA-NRKDAEVALQK 382 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~-~~~~A~~A~~~ 382 (449)
.++.|. +.=.--...|...+...-.|..+.+....+.+.|+|. +.++..++++.
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 456665 5433345778888888878999998888888999985 34444555543
No 425
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.51 E-value=1.1e+02 Score=21.79 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCCCCcccEEEEEEcc
Q 013141 141 QVVNVKVIRNKQTGQSEGYGFVEFYS 166 (449)
Q Consensus 141 ~v~~v~~~~~~~~g~~~g~afV~f~~ 166 (449)
.|.+|++.+-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888877778999999999974
No 426
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=21.38 E-value=1.6e+02 Score=18.53 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN----RKDAEVALQKL 383 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 383 (449)
.++.|.++.-..-...|...+.....|..+.+....+.+.|.|.. .+....+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 356677776665567788888877778889888888899999864 34445556543
No 427
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=20.96 E-value=1.6e+02 Score=18.25 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC
Q 013141 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (449)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~ 372 (449)
++.|.++.-..-...|...+.....|..+.+....+.+.|+|..
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDE 46 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECC
Confidence 46777776665667788888877778888888888899999964
No 428
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=20.75 E-value=1.7e+02 Score=18.43 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=39.0
Q ss_pred cEEEEcCCCCCCCHhHHHhhccccCceEEEEEeCCCcEEEEEecC----HHHHHHHHHHh
Q 013141 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN----RKDAEVALQKL 383 (449)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~g~afV~F~~----~~~A~~A~~~l 383 (449)
.++.|.++.-..-...|...+...-.|..+.+....+.+.|.|.. .+....+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457777776544456677788777678888888888899999863 34445555543
Done!