BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013142
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 5/226 (2%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 7 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYV 258
G +GN L+ D +EF+W+HG++SD+ + C D ++
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI 228
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 5/226 (2%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 2 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 177
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYV 258
G +GN L+ D +EF+W+HG++SD+ + C D ++
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI 223
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 5/226 (2%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 3 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 178
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYV 258
G +GN L+ D +EF+W+HG++SD+ + C D ++
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI 224
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 5/226 (2%)
Query: 34 AEDLVVSLPGQPKVAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXX 93
A D + LPGQP V F Y+GY+ VD GRSLFY EA + PL LWLN
Sbjct: 7 AADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 94 XXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSD-YNCGD 152
A ELG F + G GL N WNK +N+LF++SPAGVG+SY+NT+SD Y GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
TA D + F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+K
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLK 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYV 258
G +GN L+ D +EF+W+HG++SD+ + C D ++
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI 228
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 6/220 (2%)
Query: 35 EDLVVSLPGQPK-VAFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKP-LTLWLNXXXXX 92
+D ++ LPGQP VAF Y GYV +D NGR+L+Y+F EA+ L LWLN
Sbjct: 7 DDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGC 66
Query: 93 XXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGD 152
A ELG F +G L N +WNKA+N+LF ESPAGVG+SYSNT+SD + GD
Sbjct: 67 SSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGD 126
Query: 153 ASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIK 212
A+D + F++ W+E+FP + RE ++ GES GH+IPQL+ V+ + +S N +
Sbjct: 127 DKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSP--FINFQ 182
Query: 213 GVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDC 252
G+ + + L +D+ ++E +W HG+ISDE + + C
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVC 222
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/463 (27%), Positives = 215/463 (46%), Gaps = 72/463 (15%)
Query: 33 PAEDLVVSLPGQPKV-AFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXX 91
P +D + LPG K +FRQY+GY+ + L Y+FVE++ +P P+ LWLN
Sbjct: 2 PDQDEIQRLPGLAKQPSFRQYSGYLKS--SGSKHLHYWFVESQKDPENSPVVLWLNGGPG 59
Query: 92 XXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCG 151
TE GPF + DG L N SWN +N+L++ESPAGVG+SYS+ Y
Sbjct: 60 CSSLDGL-LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATN 117
Query: 152 DASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNI 211
D A+ + +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N+
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNL 171
Query: 212 KGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMS------DCDFDD--------- 256
+G+A+GN L +Q+ ++ F + HG++ + + ++ + C+F D
Sbjct: 172 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTN 231
Query: 257 -----YVSGTS----HNMTNSCIEAIT-----EANKIATKMSVGVDVCMTLERFFYLNL- 301
+ G S +N+ C + E + + + + + L+R ++ L
Sbjct: 232 LQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALL 291
Query: 302 ----------PEVQKALHANRTNLPY------------GWSMCSGVLN--YSDTDSNINI 337
P + N PY W MC+ ++N Y ++N
Sbjct: 292 RSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNS 351
Query: 338 LPVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQ 394
LK + + +++GD D +G + L + + + V YG +Q
Sbjct: 352 -QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQ 408
Query: 395 VGGWGTEYGNLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGR 437
+ G+ E+ + + F+T++GA HMVP +P A +FS F++ +
Sbjct: 409 IAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 17/250 (6%)
Query: 33 PAEDLVVSLPGQPKV-AFRQYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXX 91
P +D + LPG K +FRQY+GY+ + L Y+FVE++ +P P+ LWLN
Sbjct: 4 PDQDEIQRLPGLAKQPSFRQYSGYLKG--SGSKHLHYWFVESQKDPENSPVVLWLNGGPG 61
Query: 92 XXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCG 151
TE GPF + DG L N SWN +N+L++ESPAGVG+SYS+ Y
Sbjct: 62 CSSLDGL-LTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKF-YATN 119
Query: 152 DASTARDMHVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNI 211
D A+ + +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N+
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNL 173
Query: 212 KGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNM-TNSCI 270
+G+A+GN L +Q+ ++ F + HG++ + + ++ + C S N N +
Sbjct: 174 QGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC-----CSQNKCNFYDNKDL 228
Query: 271 EAITEANKIA 280
E +T ++A
Sbjct: 229 ECVTNLQEVA 238
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 288 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 346
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 347 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH---KQQVGGWGTEYG 403
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 404 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 440
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 288 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 346
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 347 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 406
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 407 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 446
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 288 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 346
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 347 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 406
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 407 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 442
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 288 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 346
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 347 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 406
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 407 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 440
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 288 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 346
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 347 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 406
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 407 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 440
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 188/431 (43%), Gaps = 74/431 (17%)
Query: 51 QYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRG 110
QY GY+DV+ ++ + F++ E+ +P + P+ LWLN F ELGP
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFF-ELGPSSIGP 73
Query: 111 DGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKF 170
D + + N SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQF 130
Query: 171 PEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLD 224
PE+ K ++ + GESYAGHYIP A +L H K FN+ V IGN PL + +
Sbjct: 131 PEYVNKGQDFHIAGESYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYN 186
Query: 225 QDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAIT 274
P A E + S+E L ++ C Y S + SC+ A
Sbjct: 187 YYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC----YDSQSVW----SCVPATI 238
Query: 275 EAN--KIATKMSVG---VDVCMTLE--RFFYLNLPEVQKALHANRTNLPYGWSMCSGVLN 327
N ++A G D+ E Y L ++ L+ + G + V +
Sbjct: 239 YCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVG----AEVDH 294
Query: 328 YSDTDSNIN---------ILP---VLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELA 375
Y + +IN + P + ++ +P+ V++GD+D + LG++ L
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 376 RDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVTVRGAAHMVPYAQPSR 425
+ E F Q+V W + + T++ V HMVP+ P
Sbjct: 355 WKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPEN 406
Query: 426 ALHLFSSFVHG 436
AL + + ++HG
Sbjct: 407 ALSMVNEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 188/451 (41%), Gaps = 79/451 (17%)
Query: 41 LPG-----QPKVAFRQYAGYV-----DVDVKNGRSLFYYFVEAEVEPH----EKPLTLWL 86
LPG P + +AG++ D D ++ L Y+F + ++PL +WL
Sbjct: 14 LPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWL 73
Query: 87 NXXXXXXXXXXXAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTS 146
N A E GPF DG+ L N SW +LLF++ P G G+S
Sbjct: 74 NGGPGCSSMDG-ALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKD 131
Query: 147 DYNCGDASTARDMHV-------FMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLD 199
+ D+ F+ N+++ FPE +R++ L+GESYAG YIP A+ +L+
Sbjct: 132 EGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILN 191
Query: 200 HNAHSK--GFKFNIKGVAIGNPLLR-----------------LDQDVPAIYEFFWSH--- 237
HN SK G +++K + IGN + +D+ P +H
Sbjct: 192 HNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENC 251
Query: 238 -----GMISDEIGLTIMSDCD-----FDDYVSGTSHNMTNSCIEAIT---EANKIATKMS 284
+DE +C+ Y +S T C+ + + + M+
Sbjct: 252 QNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMN 311
Query: 285 VGVDVCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGV----LNYSDTDSNINILPV 340
D+ + +FF + P V +LH + + + W C+ L+ + +I++LP
Sbjct: 312 WPKDISF-VSKFF--STPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPG 367
Query: 341 LKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIREL--ARDLNFEVTVPYGAWFHK------ 392
L +++GI + +F+GD+D + G I L F W HK
Sbjct: 368 L---LESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDD 424
Query: 393 -QQVGGWGTEYGNLLTFVTVRGAAHMVPYAQ 422
++ G+ +Y LTFV+V A+HMVP+ +
Sbjct: 425 SEEFSGY-VKYDRNLTFVSVYNASHMVPFDK 454
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/431 (25%), Positives = 186/431 (43%), Gaps = 74/431 (17%)
Query: 51 QYAGYVDVDVKNGRSLFYYFVEAEVEPHEKPLTLWLNXXXXXXXXXXXAFTELGPFYPRG 110
QY GY+DV+ ++ + F++ E+ +P + P+ LWLN F LGP
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFA-LGPSSIGP 73
Query: 111 DGRGLRRNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNCGDASTARDMHVFMMNWYEKF 170
D + + N SWN + ++F++ P VG+SYS ++ N + +D++ F+ ++++F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNT--VAAGKDVYNFLELFFDQF 130
Query: 171 PEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGN----PLLRLD 224
PE+ K ++ + G SYAGHYIP A +L H K FN+ V IGN PL + +
Sbjct: 131 PEYVNKGQDFHIAGASYAGHYIPVFASEILSH----KDRNFNLTSVLIGNGLTDPLTQYN 186
Query: 225 QDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTSHNMTNSCIEAIT 274
P A E + S+E L ++ C Y S + SC+ A
Sbjct: 187 YYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC----YDSQSVW----SCVPATI 238
Query: 275 EAN--KIATKMSVG---VDVCMTLE--RFFYLNLPEVQKALHANRTNLPYGWSMCSGVLN 327
N ++A G D+ E Y L ++ L+ + G + V +
Sbjct: 239 YCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVG----AEVDH 294
Query: 328 YSDTDSNIN---------ILP---VLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELA 375
Y + +IN + P + ++ +P+ V++GD+D + LG++ L
Sbjct: 295 YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLP 354
Query: 376 RDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL----------TFVTVRGAAHMVPYAQPSR 425
+ E F Q+V W + + T++ V HMVP+ P
Sbjct: 355 WKYDEE--------FASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPEN 406
Query: 426 ALHLFSSFVHG 436
AL + + ++HG
Sbjct: 407 ALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 298 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 355
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 356 GDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHK-----QQVGGWGTEYGNLLTFVT 410
GD D +G + L N ++ V W K +Q+ G+ E+ ++ F+T
Sbjct: 71 GDVDMACNFMGDEWFVDSL----NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 411 VRGAAHMVPYAQPSRALHLFSSFVHGR 437
++GA HMVP +P A +FS F++ +
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 349 IPVWVFSGDQDSVVPLLGSRTLIRELAR 376
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 208 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 267
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 268 SC 269
C
Sbjct: 65 LC 66
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 208 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 267
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 268 SC 269
C
Sbjct: 65 LC 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,593,363
Number of Sequences: 62578
Number of extensions: 580067
Number of successful extensions: 1253
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 23
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)