Query 013143
Match_columns 449
No_of_seqs 251 out of 1418
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 00:50:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02938 phosphatidylserine de 100.0 2E-117 5E-122 915.3 36.0 423 1-441 1-427 (428)
2 KOG2420 Phosphatidylserine dec 100.0 3.6E-96 8E-101 725.1 16.8 310 95-436 72-382 (382)
3 PTZ00403 phosphatidylserine de 100.0 5.9E-84 1.3E-88 655.4 24.4 320 55-441 15-340 (353)
4 PRK00044 psd phosphatidylserin 100.0 6.5E-77 1.4E-81 592.8 25.7 282 98-440 3-286 (288)
5 PRK03934 phosphatidylserine de 100.0 1.1E-74 2.5E-79 570.5 26.1 262 109-439 3-265 (265)
6 PRK09629 bifunctional thiosulf 100.0 8.1E-72 1.8E-76 604.4 24.5 278 99-438 327-606 (610)
7 PRK03140 phosphatidylserine de 100.0 1.4E-70 3.1E-75 539.8 24.8 255 99-439 4-258 (259)
8 PRK00723 phosphatidylserine de 100.0 4.8E-70 1E-74 545.0 22.1 268 87-439 18-294 (297)
9 TIGR00163 PS_decarb phosphatid 100.0 1.4E-66 3.1E-71 505.8 22.4 234 145-438 1-236 (238)
10 PLN02964 phosphatidylserine de 100.0 3.3E-65 7.2E-70 550.6 17.8 280 79-440 336-628 (644)
11 PF02666 PS_Dcarbxylase: Phosp 100.0 1.2E-57 2.5E-62 432.8 22.5 202 158-438 1-202 (202)
12 KOG2419 Phosphatidylserine dec 100.0 4.5E-55 9.7E-60 457.2 9.1 268 89-438 680-957 (975)
13 COG0688 Psd Phosphatidylserine 100.0 1.1E-52 2.4E-57 407.9 12.5 234 104-435 2-238 (239)
14 TIGR00164 PS_decarb_rel phosph 100.0 2.8E-40 6E-45 311.4 19.1 171 155-440 15-186 (189)
15 PRK05305 phosphatidylserine de 100.0 1.1E-38 2.4E-43 304.2 20.0 167 158-439 37-205 (206)
16 cd00210 PTS_IIA_glc PTS_IIA, P 95.6 0.075 1.6E-06 47.5 8.6 17 180-196 1-17 (124)
17 PRK09439 PTS system glucose-sp 95.4 0.32 6.9E-06 45.8 12.4 73 277-396 53-125 (169)
18 PRK10255 PTS system N-acetyl g 93.8 0.79 1.7E-05 51.5 13.0 107 276-439 530-646 (648)
19 PRK08225 acetyl-CoA carboxylas 91.4 0.53 1.2E-05 37.1 5.6 51 380-439 18-69 (70)
20 TIGR00830 PTBA PTS system, glu 90.8 1.5 3.3E-05 39.0 8.4 17 380-396 87-103 (121)
21 TIGR01995 PTS-II-ABC-beta PTS 90.5 2.4 5.2E-05 47.4 11.7 105 278-439 496-609 (610)
22 PRK07051 hypothetical protein; 88.7 1.2 2.5E-05 36.4 5.7 52 380-440 27-79 (80)
23 PF00358 PTS_EIIA_1: phosphoen 88.3 1.1 2.4E-05 40.5 5.6 70 279-396 37-107 (132)
24 PRK09824 PTS system beta-gluco 88.2 3.7 8E-05 46.1 10.9 105 278-439 512-625 (627)
25 PRK05889 putative acetyl-CoA c 77.1 6.4 0.00014 31.1 5.3 51 380-439 19-70 (71)
26 COG0688 Psd Phosphatidylserine 75.9 1.5 3.3E-05 43.4 1.7 86 110-196 12-100 (239)
27 cd06850 biotinyl_domain The bi 75.2 7.2 0.00016 29.3 5.0 50 380-439 16-67 (67)
28 PF00364 Biotin_lipoyl: Biotin 71.6 8.3 0.00018 30.8 4.7 49 380-439 23-74 (74)
29 PF07831 PYNP_C: Pyrimidine nu 68.8 4.4 9.5E-05 33.0 2.6 32 414-445 28-59 (75)
30 PF13533 Biotin_lipoyl_2: Biot 67.4 4.8 0.0001 30.0 2.3 23 420-442 14-36 (50)
31 TIGR00531 BCCP acetyl-CoA carb 62.2 26 0.00055 32.4 6.6 51 380-439 104-155 (156)
32 TIGR00830 PTBA PTS system, glu 61.4 7.8 0.00017 34.6 2.9 22 419-440 81-102 (121)
33 KOG2420 Phosphatidylserine dec 57.5 16 0.00036 38.1 4.8 82 347-440 222-306 (382)
34 PRK05305 phosphatidylserine de 56.3 1.4E+02 0.003 28.7 10.8 20 285-304 56-75 (206)
35 PLN02983 biotin carboxyl carri 56.1 20 0.00044 36.2 5.1 52 380-440 221-273 (274)
36 PF00358 PTS_EIIA_1: phosphoen 55.8 8.6 0.00019 34.8 2.3 23 419-441 85-107 (132)
37 PRK14875 acetoin dehydrogenase 52.3 27 0.00059 34.9 5.5 52 380-441 25-78 (371)
38 PF13375 RnfC_N: RnfC Barrel s 51.8 11 0.00024 32.5 2.2 48 385-440 15-62 (101)
39 COG2190 NagE Phosphotransferas 51.7 11 0.00024 35.2 2.3 19 173-191 38-56 (156)
40 PRK06748 hypothetical protein; 51.0 32 0.0007 28.7 4.8 50 380-440 21-74 (83)
41 PRK09439 PTS system glucose-sp 50.5 16 0.00034 34.5 3.2 22 419-440 103-124 (169)
42 COG0511 AccB Biotin carboxyl c 49.3 50 0.0011 29.9 6.2 51 380-440 87-139 (140)
43 PF01551 Peptidase_M23: Peptid 46.5 1.3E+02 0.0028 24.6 7.8 19 282-300 13-31 (96)
44 PRK06302 acetyl-CoA carboxylas 45.7 39 0.00085 31.2 5.0 51 380-439 103-154 (155)
45 PRK05641 putative acetyl-CoA c 44.4 38 0.00082 31.4 4.6 50 380-439 101-152 (153)
46 cd06663 Biotinyl_lipoyl_domain 44.1 53 0.0012 25.5 4.9 50 380-439 22-73 (73)
47 PRK05889 putative acetyl-CoA c 44.1 20 0.00042 28.3 2.4 23 420-442 14-36 (71)
48 PRK06549 acetyl-CoA carboxylas 43.8 50 0.0011 29.8 5.2 51 380-439 78-129 (130)
49 PF12700 HlyD_2: HlyD family s 43.5 26 0.00056 34.7 3.8 40 391-441 14-53 (328)
50 cd00210 PTS_IIA_glc PTS_IIA, P 43.5 16 0.00035 32.7 2.0 20 173-192 31-50 (124)
51 PRK08225 acetyl-CoA carboxylas 42.2 22 0.00048 27.8 2.4 22 420-441 13-34 (70)
52 PRK11854 aceF pyruvate dehydro 42.1 3.2E+02 0.007 30.9 12.4 51 380-440 227-279 (633)
53 PRK09282 pyruvate carboxylase 41.7 61 0.0013 36.3 6.6 52 380-440 539-591 (592)
54 PLN02226 2-oxoglutarate dehydr 40.9 39 0.00086 36.8 4.8 51 380-440 114-166 (463)
55 PF00364 Biotin_lipoyl: Biotin 40.7 17 0.00036 29.0 1.5 24 420-443 18-41 (74)
56 cd06850 biotinyl_domain The bi 40.5 26 0.00056 26.2 2.5 21 421-441 12-32 (67)
57 COG2190 NagE Phosphotransferas 40.0 24 0.00051 33.0 2.6 22 419-440 88-109 (156)
58 cd06849 lipoyl_domain Lipoyl d 38.8 74 0.0016 23.1 4.8 51 380-439 23-74 (74)
59 COG0511 AccB Biotin carboxyl c 37.2 25 0.00055 31.8 2.3 21 420-440 82-102 (140)
60 PF01551 Peptidase_M23: Peptid 36.1 30 0.00065 28.5 2.4 19 423-441 56-74 (96)
61 PRK14042 pyruvate carboxylase 35.8 92 0.002 35.1 6.8 52 380-440 542-594 (596)
62 PF02666 PS_Dcarbxylase: Phosp 35.6 3.9E+02 0.0085 25.3 10.9 21 420-440 147-169 (202)
63 PRK14040 oxaloacetate decarbox 33.0 1E+02 0.0022 34.7 6.6 50 380-439 541-592 (593)
64 PRK06748 hypothetical protein; 31.7 40 0.00088 28.1 2.5 22 420-441 16-37 (83)
65 cd06250 M14_PaAOTO_like An unc 30.5 54 0.0012 34.3 3.8 23 419-441 299-321 (359)
66 cd06255 M14_ASTE_ASPA_like_5 A 30.1 36 0.00079 34.4 2.3 23 420-442 242-264 (293)
67 PTZ00144 dihydrolipoamide succ 30.0 94 0.002 33.5 5.5 53 380-441 67-120 (418)
68 TIGR01347 sucB 2-oxoglutarate 29.0 92 0.002 33.2 5.2 53 380-441 23-76 (403)
69 PRK05704 dihydrolipoamide succ 28.5 1E+02 0.0022 33.0 5.4 53 380-441 25-78 (407)
70 PF01333 Apocytochr_F_C: Apocy 28.3 40 0.00086 30.0 1.9 29 397-437 33-61 (118)
71 cd06253 M14_ASTE_ASPA_like_3 A 27.9 39 0.00085 34.3 2.1 24 419-442 239-262 (298)
72 cd06254 M14_ASTE_ASPA_like_4 A 27.9 54 0.0012 32.9 3.1 22 420-441 234-255 (288)
73 TIGR02994 ectoine_eutE ectoine 26.9 57 0.0012 33.7 3.1 23 420-442 266-288 (325)
74 cd06252 M14_ASTE_ASPA_like_2 A 26.4 59 0.0013 33.2 3.2 23 420-442 255-277 (316)
75 cd06663 Biotinyl_lipoyl_domain 25.8 57 0.0012 25.3 2.3 22 420-441 17-38 (73)
76 TIGR01348 PDHac_trf_long pyruv 24.0 1.5E+02 0.0032 32.9 5.9 53 380-441 22-75 (546)
77 cd06251 M14_ASTE_ASPA_like_1 A 23.9 54 0.0012 33.0 2.3 23 419-441 229-251 (287)
78 TIGR01936 nqrA NADH:ubiquinone 23.2 80 0.0017 34.2 3.5 20 420-439 41-60 (447)
79 TIGR01108 oadA oxaloacetate de 22.5 1.6E+02 0.0034 33.1 5.7 48 380-436 534-582 (582)
80 cd06253 M14_ASTE_ASPA_like_3 A 22.4 2.1E+02 0.0045 29.1 6.2 51 380-439 245-297 (298)
81 TIGR01995 PTS-II-ABC-beta PTS 22.3 70 0.0015 36.0 2.9 23 419-441 545-567 (610)
82 PLN02964 phosphatidylserine de 22.2 2.9E+02 0.0063 31.5 7.7 21 420-440 565-585 (644)
83 TIGR02712 urea_carbox urea car 21.2 1.9E+02 0.0042 35.3 6.5 49 380-439 1149-1200(1201)
84 PRK10255 PTS system N-acetyl g 20.5 82 0.0018 35.8 3.0 22 419-440 581-602 (648)
85 TIGR01235 pyruv_carbox pyruvat 20.4 2.3E+02 0.005 34.5 6.8 51 380-439 1091-1142(1143)
86 PRK11854 aceF pyruvate dehydro 20.2 1.8E+02 0.0039 32.9 5.6 54 380-442 23-77 (633)
No 1
>PLN02938 phosphatidylserine decarboxylase
Probab=100.00 E-value=2.2e-117 Score=915.31 Aligned_cols=423 Identities=74% Similarity=1.222 Sum_probs=382.2
Q ss_pred CccccCCCCcccccccccccccccccchhhhhhhccCCccccccccCCCCCcccceEeecchhHHHHHHHHHhhhhhhhh
Q 013143 1 MKFRFSNKVSVFPHYLRLEYDHHCRQFSTSFLRKLQTNPQVRASFSGGSNNSQGNTFLLPGATLATLLMLGALHARRMYD 80 (449)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~ 80 (449)
||||+++++|+|+++.+++|+|+ ++. .+++++|+++++|||.|+|||||++||+|||++|+||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 66 (428)
T PLN02938 1 MKFRVSSKLPLLARYSLLRHQHH-HQS-------------SRASVNGGSGSSQGNSFLLPGATVATLLMLGALHARRLYE 66 (428)
T ss_pred CCCCCCCCcccccccCcchhhcc-hhc-------------ccccccCCCCCCCCceeecCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887765 331 2257889999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccceecchHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCccccccccc
Q 013143 81 DRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLRE 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~ 160 (449)
++|+++++++|++++|+++|++.++++||++++||+||+++++++|.|+|+++|++|++.|+|||+|+++|+++|+||||
T Consensus 67 ~~~~~~~~~~g~~~~~~~~~~~~ll~lLP~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f~inl~E~~~p~~~Y~Sfnd 146 (428)
T PLN02938 67 DKKVEEAREKGIEPEFSPDTKASFLRLLPLRSISRLWGSLTSVELPVWMRPYVYKAWARAFHSNLEEAALPLEEYASLRE 146 (428)
T ss_pred HHHHHHHHhcCcccccCCHHHHHHHHHccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCcCHHHhhcchhhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCC
Q 013143 161 FFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTP 240 (449)
Q Consensus 161 FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~ 240 (449)
||+|+||||+||||+|+++|||||||+|+++|+|+++++.++||||++|||++|||.+..++...++.+..+ ++..
T Consensus 147 FFtRkLKpgaRPid~d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~----~~~~ 222 (428)
T PLN02938 147 FFVRSLKEGARPIDPDPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKE----EETL 222 (428)
T ss_pred hheeccCCCCCcCCCCCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchh----hccc
Confidence 999999999999999999999999999999999986555788999999999999997654333222222111 2345
Q ss_pred cccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccc
Q 013143 241 TEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFE 320 (449)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~ 320 (449)
.|++.++||+++++++|.+|...+++++||+||||||||+||||||||+||+|++++||||+||||||.+++++++||++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ViYLsP~DYHR~HsP~dg~v~~~rhipG~L~sVnp~~~~~i~~LF~~ 302 (428)
T PLN02938 223 KDKSSKSWLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFSGRLFPVNERATRTIRNLYVE 302 (428)
T ss_pred cccccchhhhhhhccccccccccccccCCcEEEEEEeCccccceEeecCCcEEEEEEEcCCcccccCHHHHhhCCCcccc
Confidence 67778899999999999998878889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecCCEE
Q 013143 321 NERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTV 400 (449)
Q Consensus 321 NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTV 400 (449)
||||||+++|++|+|+||+|||||||||+++||++|+||.++.....++++.+++|+....|..++||||||+|+|||||
T Consensus 303 NERvVl~g~w~~G~~a~v~VGAtnVGsI~~~~d~~l~TN~~~~~~~~~~~~~~~~Y~~~~~g~~l~KGeE~G~F~lGSTV 382 (428)
T PLN02938 303 NERVVLEGEWQEGFMAMAAVGATNIGSIELFIEPELRTNRPKKKIFNSEPPEERVYEPEGCGLCLKKGDEVAVFNLGSTV 382 (428)
T ss_pred ceEEEEEeecCCceEEEEEEeeeEEEEEEEEeccccccCCcccccccccccceeecccccCCceeccccEeeeecCCCeE
Confidence 99999999999999999999999999999999999999998766556677889999766568999999999999999999
Q ss_pred EEEeeCCCCC----CCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 401 VLVFQAPTIK----SPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 401 VLvFea~~~~----~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
|||||+|... +.++..+.+|+|++++||+|||||+||++.+
T Consensus 383 VLvFEap~~~~~~~~~~~~~~~~~~~~l~~G~~Vk~Gq~LG~~~~ 427 (428)
T PLN02938 383 VLVFEAPVEVEPLFKVLDQSSSDFRFCVRKGDRIRVGQALGRWME 427 (428)
T ss_pred EEEEeCCcccccccccccccccCccccccCCCEEEcchhhccccc
Confidence 9999999642 1235556689999999999999999998864
No 2
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-96 Score=725.14 Aligned_cols=310 Identities=47% Similarity=0.817 Sum_probs=268.8
Q ss_pred eecchHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCC-cccccccccceeccCCCCCCcC
Q 013143 95 EFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALP-LGEYASLREFFVRTLKQGSRPI 173 (449)
Q Consensus 95 ~~~~~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~p-l~~Y~Sln~FF~R~LKpgaRPI 173 (449)
+..+.|++++|.+||+|++||+||++|+++||.|+|++.|++|+|+|||||+|+++| +++|+||+|||+|+||||+|||
T Consensus 72 r~~~~wq~~~y~sLPlrtlSR~WG~~n~~elP~wlR~~~y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpI 151 (382)
T KOG2420|consen 72 RTYSIWQFRVYSSLPLRTLSRVWGQLNSLELPVWLRPPGYGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPI 151 (382)
T ss_pred eeccceEEEEEEecchHHHHHHHHhhhheeccchhcchhhhhhhHhhccCchhccCchhhhhhhHHHHHhhccCCCCccc
Confidence 455679999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCccccccccccccc
Q 013143 174 DHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISL 253 (449)
Q Consensus 174 d~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (449)
|++ ..+||||||||++||.|++ ++||||||++|||++|||.... |..+-.|.. +|-+++.
T Consensus 152 dp~-~piVSPaDGkIL~fG~v~~--~~IEqVKG~tYSleafLG~~~~-P~~~~~d~~----------------~f~~~~a 211 (382)
T KOG2420|consen 152 DPA-SPLVSPADGKILHFGVVED--NEIEQVKGHTYSLEAFLGTHSH-PSCASVDLP----------------QFARVSA 211 (382)
T ss_pred CCC-CceecCCCCcEEEEEEecC--ceeeEecCeeeeHHHHcCCCCC-Ccccccccc----------------ccccccC
Confidence 985 4799999999999999997 5999999999999999995432 211101100 0111110
Q ss_pred CCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCe
Q 013143 254 ASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEG 333 (449)
Q Consensus 254 ~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G 333 (449)
...++.. ...+..+++|+|||||+||||||||||+||+++.+|||+|.|++|+|..++++++||++||||++.|+|++|
T Consensus 212 s~~~lk~-~~s~~~~~Ly~~VIYLaPGDYH~fHSP~dWv~t~rRHf~G~l~svsp~~~~~l~~lf~LnerV~l~G~wkhG 290 (382)
T KOG2420|consen 212 SCDELKP-SVSRPGTELYQCVIYLAPGDYHRFHSPADWVATVRRHFPGLLLSVSPTLARWLPNLFCLNERVVLLGSWKHG 290 (382)
T ss_pred chhhhhh-cCCCcccceeEEEEEccCCcccccCChHHhhhhhhhcccCcccccChhhhccCCceEEEEEEeeecceeeec
Confidence 0011111 122567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecCCEEEEEeeCCCCCCCC
Q 013143 334 YLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPN 413 (449)
Q Consensus 334 ~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d 413 (449)
||+|++|||||||||++++|++|+||++..+...+.++++.+|.+. +|.++.|||++|.|+|||||||+||||+
T Consensus 291 Ffs~taVGATNvGsI~i~~d~~l~TN~~~~~k~~~~~~~~~~~~~~-eg~p~~kge~~g~f~lGStivl~feap~----- 364 (382)
T KOG2420|consen 291 FFSMTAVGATNVGSIVINFDPELRTNSPIVRKKSPKTFNEETYINA-EGMPYVKGERVGEFRLGSTIVLVFEAPK----- 364 (382)
T ss_pred eeeeeeeccCccceEEeecCcccccCccccccCCCCCCcceEEEcC-CCceeccccccccEecCcEEEEEEeCCC-----
Confidence 9999999999999999999999999988443344456667777654 6899999999999999999999999998
Q ss_pred CCCCCCceeeeeCCCEEEcccee
Q 013143 414 RGDNSNFRFCIKRGDKIRVGEGL 436 (449)
Q Consensus 414 ~~~~~~~~~~v~~G~kVk~Gq~L 436 (449)
+|+|+++.||+|||||+|
T Consensus 365 -----~fkf~~~~gq~vr~ge~l 382 (382)
T KOG2420|consen 365 -----DFKFDIKAGQKVRVGESL 382 (382)
T ss_pred -----cceeeeecCceeeccccC
Confidence 699999999999999986
No 3
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=5.9e-84 Score=655.43 Aligned_cols=320 Identities=33% Similarity=0.582 Sum_probs=270.8
Q ss_pred ceEeecchhHHHHHHHHHhhhhhhhhhHHHHHHHhhcccceecchHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhH
Q 013143 55 NTFLLPGATLATLLMLGALHARRMYDDRKVEEAREKGIEIEFKPDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVY 134 (449)
Q Consensus 55 ~~~~~~~~~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~ 134 (449)
|.+++.|+|+++.. |++ | |+ |.+- ...-+++. ..++++++.++++||.+++||+||+++++++|.|+|.++|
T Consensus 15 ~~~~~~~~~~~~~~-~~~-~-y~-~~e~--~~~~~~~~--~~~~~~~~~~l~llp~~~~Srl~G~~a~~~~p~~lr~~ii 86 (353)
T PTZ00403 15 KKYLITGVTILSFI-LMF-Q-YK-YHEV--LTLHDNSE--NAQQSSKLFWARLLFGRTRSRITGSIFNIEIPNTYRLPIY 86 (353)
T ss_pred HHHHHHHHHHHhhe-eee-e-hh-hhhH--hhccCCCc--eeccHHHHHHHHHhhhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 55788888875332 221 1 11 2111 11113333 4457899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccccCCcccccccccceeccCCCCCCcCC-CCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhh
Q 013143 135 KAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPID-HDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSS 213 (449)
Q Consensus 135 k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~LKpgaRPId-~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~ 213 (449)
++|++.|+|||+|+++|+++|+||||||+|+||||+|||+ +++++|||||||+|+++|.|+++ .++||||++|||++
T Consensus 87 ~~fik~y~Inl~E~~~~~~~Y~SfndFFtR~lk~~~RPi~~~~~~~iVSPaDg~v~~~g~I~~~--~~~qvKG~~Ysl~~ 164 (353)
T PTZ00403 87 NFLIKYMGINKEEIKYPIESYKSIGDFFSRYIREETRPIGDVSDYSIVSPCDSELTDYGELSSE--YLENVKGVKFNVNT 164 (353)
T ss_pred HHHHHHHCCCHHHhhCChhcCCCHHHceeecccCCCCCCCCCCCCeEEeCCCceeEeeeEecCC--CEEEeCCCcccHHH
Confidence 9999999999999998899999999999999999999995 47889999999999999999873 45699999999999
Q ss_pred hcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCccccCccccccc----CCeEEEEEEECCCCceeeeecc
Q 013143 214 LLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPV----KGLYYCVIYLKPGDYHRIHSPV 289 (449)
Q Consensus 214 LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~gg~~~vIYLsP~DYHR~HsPv 289 (449)
|||++. ++.+ ++++|++|||||.||||||||+
T Consensus 165 LLg~~~--------------------------------------------a~~~~~g~~~~~~~v~yLsP~DYHR~HsP~ 200 (353)
T PTZ00403 165 FLGSDM--------------------------------------------QKKYNDGSTKFFYAIFYLSPKKYHHFHAPF 200 (353)
T ss_pred HhCchh--------------------------------------------HHhhcCCCCcEEEEEEEECcceeeEEeccC
Confidence 999531 1123 3458999999999999999999
Q ss_pred CcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccC-C
Q 013143 290 DWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLH-S 368 (449)
Q Consensus 290 ~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~-~ 368 (449)
+|+|.+++||||+||||||.+++++++||++|||+|+.++|++|.|+||+|||+|||||++++|++++||..+..+.. .
T Consensus 201 ~g~v~~~~~IpG~L~pVnp~~l~~~~~lf~~NERvv~~~~~~~G~~~~v~VGA~~VGsI~~~~~~~l~tn~~~~~~~~~~ 280 (353)
T PTZ00403 201 NFKYKIRRHISGELFPVFQGMFKIINNLFNINERVILSGEWKGGNVYYAAISAYNVGNIKIINDEELVTNNLRTQLSYMG 280 (353)
T ss_pred ceEEEEEEEeCCeEeeeCHHHHhcCcccccceEEEEEEeecCCceEEEEEEeeEEEEEEEEEeccccccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974321111 1
Q ss_pred CCCCceecccCCCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 369 EPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 369 ~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
+...++.|+ .+..++||||+|+|+|||||||+||++. +|++++++|++|||||+||.+.+
T Consensus 281 ~~~~~~~y~---~~~~v~KGeElG~F~~GSTVVllFe~~~----------~~~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 281 GDINTKIYD---SYKSVEVGDEVGEFRMGSSIVVIFENKK----------NFSWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred CcceeeecC---CCCcccccceeeEeccCCeEEEEEeCCC----------cCCcccCCCCEEEeeeeccccCC
Confidence 223455664 2568999999999999999999999996 48999999999999999998753
No 4
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=100.00 E-value=6.5e-77 Score=592.80 Aligned_cols=282 Identities=34% Similarity=0.557 Sum_probs=253.0
Q ss_pred chHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCC-cccccccccceeccCCCCCCcCCCC
Q 013143 98 PDAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALP-LGEYASLREFFVRTLKQGSRPIDHD 176 (449)
Q Consensus 98 ~~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~p-l~~Y~Sln~FF~R~LKpgaRPId~d 176 (449)
..+...+++++|++++||+||+++++++| |++++.|+.|++.|+|||+|+++| +++|+||||||+|+|||++|||+++
T Consensus 3 ~~~~~~~~~~~p~~~~Sr~~g~~~~~~~~-~~~~~~i~~f~~~~~i~~~E~~~~~~~~y~s~~~FF~R~lk~~~Rpi~~~ 81 (288)
T PRK00044 3 DRLKILLQYLLPKHLLTRLAGWLASSRAG-WLTTAVIRLFIKKYKVDMSEAQKPDPAAYKTFNDFFTRALKDGARPIDED 81 (288)
T ss_pred hHHHHHHHHHcChHHHHHHHHHHHcCCCc-cchHHHHHHHHHHhCCCHHHHccCChhhCCCHHHhceecccCCCCCCCCC
Confidence 46788899999999999999999999998 889999999999999999999876 9999999999999999999999999
Q ss_pred CCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCc
Q 013143 177 PHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASP 256 (449)
Q Consensus 177 ~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (449)
+++|||||||+|+.+|+|+++ .++||||++|||++|||++.
T Consensus 82 ~~~ivSPaDG~v~~~~~i~~~--~~~~vKG~~Ysl~~lL~~~~------------------------------------- 122 (288)
T PRK00044 82 PNALVSPADGAISQLGPIEDG--QIFQAKGHSYSLEALLGGDA------------------------------------- 122 (288)
T ss_pred CCEEEeCCCceEEeEEeecCC--CEEEECCceeeHHHHcCCCh-------------------------------------
Confidence 999999999999999999873 46699999999999998531
Q ss_pred cccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEE
Q 013143 257 RVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLA 336 (449)
Q Consensus 257 ~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a 336 (449)
.+++.+.||++++|||||.||||||||++|+|.+++|+||+||||||.++++.++||++|||+++.++|++|.|+
T Consensus 123 -----~~~~~~~~G~~i~iyLsp~DYHr~HsPv~G~v~~~~~i~G~~~~v~~~~~~~~~~lf~~NeR~v~~i~t~~G~v~ 197 (288)
T PRK00044 123 -----ALADPFRNGSFATIYLSPRDYHRVHMPCDGTLREMIYVPGDLFSVNPLTARNVPNLFARNERVVCLFDTEFGPMA 197 (288)
T ss_pred -----HHHHhcCCCEEEEEEECcceeeEEeccCCcEEEEEEEeCCcccccCHHHhccCCCccceeeEEEEEEECCCCcEE
Confidence 134578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecceecCeeEEeecCccccCCccccccCCCCCCceecccC-CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCC
Q 013143 337 MAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQ-GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRG 415 (449)
Q Consensus 337 ~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~-~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~ 415 (449)
+++|||+|||||+++|++.+.+|... ...++.|... ..|..++||||+|+|+|||||||+||++.+
T Consensus 198 ~v~VGA~~VGsI~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~v~kGee~G~F~fGStVvllfe~~~~------ 264 (288)
T PRK00044 198 QVLVGATIVGSIETVWAGTVTPPREG-------IIKRWDYPEAGDGAITLKKGAEMGRFKLGSTVINLFPPGKV------ 264 (288)
T ss_pred EEEEeeEeecceEEEecccccCCcCC-------cceeeeccccccCCCeEccccEeecccCCCeEEEEEeCCCc------
Confidence 99999999999999999888655421 1223445321 347899999999999999999999999864
Q ss_pred CCCCceeeeeCCCEEEccceeeeec
Q 013143 416 DNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 416 ~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
.|.+++++||+|+|||+||++.
T Consensus 265 ---~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 265 ---QLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred ---eeccccCCCCEEEcChhhcCcc
Confidence 3667799999999999999764
No 5
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.1e-74 Score=570.50 Aligned_cols=262 Identities=35% Similarity=0.662 Sum_probs=238.6
Q ss_pred chHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCcccccccccceeccCCCCCCcCCCCCCeeEecCCcEE
Q 013143 109 PLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIV 188 (449)
Q Consensus 109 P~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~LKpgaRPId~d~~~lVSPaDGkV 188 (449)
|++++||+||+++++++|.|+++++|++|++.|+|||+|++ ++++|+||||||+|+||| .|||++++++|||||||+|
T Consensus 3 ~~~~~S~~~g~~~~~~~~~~~~~~~i~~f~~~~~i~~~e~~-~~~~y~sfn~FF~R~lk~-~Rpi~~~~~~ivSPaDG~v 80 (265)
T PRK03934 3 LSNALSRIFGKFAGYKFPKFIQKFINASYVKIFKIDMSEFK-PPENYKSLNALFTRSLKK-PREFDEDPNIFISPCDSLI 80 (265)
T ss_pred chHHHHHHHHHHhcCCCCccchHHHHHHHHHHHCCCHHHhc-CcccCCCHHHhccccCCC-CCCCCCCCCEEEECCCcEE
Confidence 67899999999999999999999999999999999999997 689999999999999999 5999999999999999999
Q ss_pred EEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCccccCcccccccC
Q 013143 189 LRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVK 268 (449)
Q Consensus 189 l~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 268 (449)
+++|+|+++ .++||||.+|||++|||++. ++.+.
T Consensus 81 ~~~~~i~~~--~~~~vKg~~y~l~~lL~~~~--------------------------------------------~~~~~ 114 (265)
T PRK03934 81 TECGSLEED--KALQIKGMEYSIEELLGESN--------------------------------------------SELVN 114 (265)
T ss_pred EEEEEECCC--CEEEECCccccHHHHcCCcc--------------------------------------------hhhcC
Confidence 999999874 45699999999999998641 14678
Q ss_pred CeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCe-eEEEEEecceecCe
Q 013143 269 GLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEG-YLAMAAVGATNIGS 347 (449)
Q Consensus 269 gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G-~~a~v~VGAtnVGs 347 (449)
+|++++|||||.||||+|||++|+|.+++|+||+||||||.+++..++||++|||+++.++|++| .|+|++|||+||||
T Consensus 115 ~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG~~~~vn~~~~~~~~~lf~~NeR~v~~~et~~g~~v~~v~VgA~~Vg~ 194 (265)
T PRK03934 115 GFDYINFYLSPKDYHRYHAPCDLEILEARYIPGKLYPVNLPSLEKNKNLFVKNERVVLKCKDKKGKRLYFVFVGALNVGK 194 (265)
T ss_pred CcEEEEEEECcceEEEEeccCCcEEEEEEEcCCeeeccCHHHHhhcCccccceeEEEEEEEcCCCCEEEEEEEeeEEeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999977 89999999999999
Q ss_pred eEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCC
Q 013143 348 IELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRG 427 (449)
Q Consensus 348 I~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G 427 (449)
|+++|++++.||.....+ ..+.| .|..++||||+|+|+|||||||+||++. +++++++|
T Consensus 195 I~~~~~~~~~~~~~~r~i------~~~~~----~~~~v~kGee~G~F~fGSTVvllf~~~~-----------~~~~v~~g 253 (265)
T PRK03934 195 MRFNFDERIQTNAKARFI------QTYEY----ENLKLKKGEELGNFEMGSTIVLFSQKGS-----------LEFNLKAG 253 (265)
T ss_pred EEEEeccccccCcccCce------eeecc----CCceEccccEeeEEccCCEEEEEEeCCc-----------ceEccCCC
Confidence 999999999998532211 12222 3789999999999999999999999974 78889999
Q ss_pred CEEEccceeeee
Q 013143 428 DKIRVGEGLGRW 439 (449)
Q Consensus 428 ~kVk~Gq~LG~~ 439 (449)
|+|+|||+||.+
T Consensus 254 ~~V~~Ge~ig~~ 265 (265)
T PRK03934 254 KSVKFGESIGEI 265 (265)
T ss_pred CEEEcchhhccC
Confidence 999999999863
No 6
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=8.1e-72 Score=604.38 Aligned_cols=278 Identities=29% Similarity=0.501 Sum_probs=248.5
Q ss_pred hHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCccccc-CCcccccccccceeccCCCCCCcCCCCC
Q 013143 99 DAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAA-LPLGEYASLREFFVRTLKQGSRPIDHDP 177 (449)
Q Consensus 99 ~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~-~pl~~Y~Sln~FF~R~LKpgaRPId~d~ 177 (449)
.+...++.+||.+++||+||+++++++| |++.++|++|++.|+|||+|++ +|+++|+||||||+|+||||+|||+.++
T Consensus 327 ~~~~~~~~llp~~~~S~~~g~~a~~~~~-~~~~~~i~~fi~~y~i~l~E~~~~~~~~y~sfn~FF~R~lk~~~Rpi~~~~ 405 (610)
T PRK09629 327 RLFIISQYLLPHHLLSRLAGCVAECRVR-WFKNAFTAWFARRYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDTTP 405 (610)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHhCccH-hhHHHHHHHHHHHhCCCHHHhhccCcccCCCHHHhcccccCCCCCCCCCCC
Confidence 4677888999999999999999999997 8999999999999999999988 4699999999999999999999999999
Q ss_pred CeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCcc
Q 013143 178 HCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPR 257 (449)
Q Consensus 178 ~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (449)
++|||||||+|+++|.|+++ .++||||++|||.+|||.+.
T Consensus 406 ~~ivSPaDg~v~~~g~i~~~--~~~~vKG~~Ysl~eLL~~~~-------------------------------------- 445 (610)
T PRK09629 406 GAILSPADGAISQLGPIDHG--RIFQAKGHSFSVLELLGGDP-------------------------------------- 445 (610)
T ss_pred CeEEecCccceeeeccccCC--cEEEECCCcccHHHHhCCCH--------------------------------------
Confidence 99999999999999999873 56699999999999998531
Q ss_pred ccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEE
Q 013143 258 VRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAM 337 (449)
Q Consensus 258 ~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~ 337 (449)
.+++.+.||++++|||||.||||||||++|+|.+++|+||+||||||.++++++++|++|||++++++|++|.|+|
T Consensus 446 ----~~~~~~~~G~~~~iyLsP~DYHR~H~Pv~G~v~~~~~ipG~l~sV~~~~~~~~~~lf~~NeR~v~~i~t~~G~~~~ 521 (610)
T PRK09629 446 ----KLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAV 521 (610)
T ss_pred ----HHHhhcCCCeEEEEEECCCeeEEEeecCCcEEEEEEEECCeEEeccHHHhhccCccchhceeEEEEEEeCCCeEEE
Confidence 1345688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecceecCeeEEeecCccccCCccccccCCCCCCceeccc-CCCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCC
Q 013143 338 AAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEP-QGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGD 416 (449)
Q Consensus 338 v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~-~~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~ 416 (449)
|+|||+|||||+++|+.. .||..+ ...++.|.. ...|..++||||+|+|+|||||||+||++.+
T Consensus 522 v~VGA~~VgsI~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~kGeE~G~F~~GSTvvllf~~~~~------- 586 (610)
T PRK09629 522 VLVGAMIVASVETVWAGL-VTPPKR-------ELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPNQV------- 586 (610)
T ss_pred EEeceEeeeeEEEEeccc-ccCCcc-------ccceeccccccccCceEeecceeeEeccCCeEEEEecCCce-------
Confidence 999999999999999754 466421 122344532 2347899999999999999999999999865
Q ss_pred CCCceeeeeCCCEEEccceeee
Q 013143 417 NSNFRFCIKRGDKIRVGEGLGR 438 (449)
Q Consensus 417 ~~~~~~~v~~G~kVk~Gq~LG~ 438 (449)
.|..++++|++|||||.||+
T Consensus 587 --~~~~~l~~~~~v~~Gq~lg~ 606 (610)
T PRK09629 587 --KWAEQLTAGSKVQMGQALAV 606 (610)
T ss_pred --ecCccccCCCEEeechhhCC
Confidence 36667999999999999985
No 7
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.4e-70 Score=539.82 Aligned_cols=255 Identities=32% Similarity=0.487 Sum_probs=235.2
Q ss_pred hHHHHHHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCcccccccccceeccCCCCCCcCCCCCC
Q 013143 99 DAKASFLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPH 178 (449)
Q Consensus 99 ~~~~~ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~LKpgaRPId~d~~ 178 (449)
.+...+++++|.+++||++|++++++++ .++|+.|++.|+|||+|+++|+++|+||||||+|+||||+|||+++++
T Consensus 4 ~~~~~~~~~~~~~~~s~~~g~~~~~~~s----~~~i~~f~~~~~i~~~e~~~~~~~y~sfn~FF~R~lk~~~Rpi~~~~~ 79 (259)
T PRK03140 4 TLYRLLIELTNGRFTSYLLRKFAQSRLS----SILIPSYAKVYQINQDEMEKGLKEYRTLHELFTRKLKEGKRPIDTDAS 79 (259)
T ss_pred HHHHHHHHHcchHHHHHHHHHHhCCccc----HHHHHHHHHHhCCChHHhccChhcCCCHHHhceecCCCCCCCCCCCCC
Confidence 4677889999999999999999999964 557899999999999999999999999999999999999999998889
Q ss_pred eeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCccc
Q 013143 179 CLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRV 258 (449)
Q Consensus 179 ~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (449)
+|||||||+|+.+|+|+++ . ..||||++|||.+|||++.
T Consensus 80 ~vvSPaDg~v~~~~~i~~~-~-~~~iKg~~ysl~~lL~~~~--------------------------------------- 118 (259)
T PRK03140 80 SIVSPVDGVFADVGPIEDD-K-TFDVKGKRYSIAEMLGNEE--------------------------------------- 118 (259)
T ss_pred EEEeCCCcEEEEEeecCCC-C-EEEECCceeeHHHhcCChh---------------------------------------
Confidence 9999999999999999874 3 4599999999999998542
Q ss_pred cCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEE
Q 013143 259 RDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMA 338 (449)
Q Consensus 259 ~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v 338 (449)
+++.+.+|++++|||||.||||+|+|++|+|.+.+|++|+||||||.++...+++|++|||+++.+++++|.++++
T Consensus 119 ----~a~~f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~~~~i~G~l~~V~~~~~~~~~~~~~~NeR~v~~i~~~~G~v~~v 194 (259)
T PRK03140 119 ----RAQRYAGGTYMVLYLSPSHYHRIHSPISGTVTEQFVLGRKSYPVNALGLEYGKRPLSKNYRSVTEVNSDGEHMALV 194 (259)
T ss_pred ----HHhhhcCCeEEEEEECccceEEEeccCCcEEEEEEECCCceeccCHHHhhcCCccccccceEEEEEEeCCceEEEE
Confidence 3567889999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred EecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCC
Q 013143 339 AVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNS 418 (449)
Q Consensus 339 ~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~ 418 (449)
+|||++||+|+++. .|..++||||+|+|+|||||||+||++.+
T Consensus 195 ~Vga~~Vg~I~~~~----------------------------~g~~v~kGee~G~F~fGStvvllf~~~~~--------- 237 (259)
T PRK03140 195 KVGAMFVNSIELTH----------------------------ERDTVQKGEEMAYFSFGSTVVLLFEKDMI--------- 237 (259)
T ss_pred EEeeEEeeEEEEec----------------------------CCCEEecCcEeeeeccCCeEEEEEeCCcc---------
Confidence 99999999998621 36789999999999999999999999865
Q ss_pred CceeeeeCCCEEEccceeeee
Q 013143 419 NFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
.|++++++||+|+|||+||++
T Consensus 238 ~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 238 EPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred ccchhhcCCCEEEcChhhccc
Confidence 477889999999999999975
No 8
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=4.8e-70 Score=544.99 Aligned_cols=268 Identities=32% Similarity=0.479 Sum_probs=237.9
Q ss_pred HHhhcccceecchHHHHHHhhc-chHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCcccccccccceecc
Q 013143 87 AREKGIEIEFKPDAKASFLRLL-PLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRT 165 (449)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~L-P~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~ 165 (449)
+++..+++.|++.++..++++| |.+++||+||++++++++ +. .++.|++.|+|||+|+++|+++|+||||||+|+
T Consensus 18 ~~~~~~~~~y~~~~gr~~l~~l~~~~~~S~~~G~~~~~~~s---~~-~I~~f~~~~~id~~e~~~~~~~y~sfn~FFtR~ 93 (297)
T PRK00723 18 AGEKYLKWLYSSPIGKNLLELLIKKKIFSKIYGWYCDSRLS---RK-KIKPFVNDFNIDMSESEKPLSDFKSFNDFFTRK 93 (297)
T ss_pred cHHHHHHHHhcCHHHHHHHHHhcCcHHHHHHHHHHhCCcch---HH-HHHHHHHHhCCCHHHhhcChhhCCCHHHceeec
Confidence 3455678899999988888766 679999999999999965 44 459999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCccccc
Q 013143 166 LKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTK 245 (449)
Q Consensus 166 LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (449)
|||++|||++++++|||||||+|+.+++|+++ . ..||||++|||.+|||++.
T Consensus 94 lk~~~Rpi~~~~~~ivSPaDg~v~~~~~i~~~-~-~~~vKG~~Ysl~~LLg~~~-------------------------- 145 (297)
T PRK00723 94 LKPEARPIDQGENILISPGDGRLLAYENIDLN-S-LFQVKGKTYSLKELLGDPE-------------------------- 145 (297)
T ss_pred CCCCCCCCCCCCCEEEECCCcEEEEEEEEcCC-C-eEEEcCceeeHHHHcCChh--------------------------
Confidence 99999999998999999999999999999874 3 4599999999999998642
Q ss_pred ccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEE
Q 013143 246 KSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVV 325 (449)
Q Consensus 246 ~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvv 325 (449)
+++.+.+|+++++||||.||||+|||++|+|.+++|++|+||||||.+++..+++|++|||++
T Consensus 146 -----------------~a~~f~~G~~~~~yLsp~DYHR~HsPv~G~v~~~~~i~G~l~~V~p~~l~~~~~~f~~NeR~v 208 (297)
T PRK00723 146 -----------------LAKKYAGGTCLILRLCPTDYHRFHFPDSGICEETRKIKGHYYSVNPIALKKIFELFCENKREW 208 (297)
T ss_pred -----------------HHHhcCCCEEEEEEECCCeEEEEEccCCcEEEEEEEECCeEeecChHHhhccccccccceeEE
Confidence 356788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec-CeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeec-CCEEEEE
Q 013143 326 LEGMWQ-EGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM-GSTVVLV 403 (449)
Q Consensus 326 l~g~~~-~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l-GSTVVLv 403 (449)
++++++ +|.|++++|||++||+|+.++ .+|..++||||+|+|+| ||||||+
T Consensus 209 ~~i~t~~~G~v~~v~VGa~~VgsI~~~~---------------------------~~g~~v~KGeE~G~F~fGGSTvvll 261 (297)
T PRK00723 209 SIFKSENFGDILYVEVGATCVGSIIQTY---------------------------KPNKKVKKGDEKGYFKFGGSTVILF 261 (297)
T ss_pred EEEEcCCCCEEEEEEEhheEeeEEEEEe---------------------------cCCCEEecCcCccccccCCCcEEEE
Confidence 999985 899999999999999998643 23678999999999999 5999999
Q ss_pred eeCCCCCCCCCCCCCCceeeeeC------CCEEEccceeeee
Q 013143 404 FQAPTIKSPNRGDNSNFRFCIKR------GDKIRVGEGLGRW 439 (449)
Q Consensus 404 Fea~~~~~~d~~~~~~~~~~v~~------G~kVk~Gq~LG~~ 439 (449)
||++++. |..++.+ +++|+|||.||+.
T Consensus 262 fe~~~i~---------~~~~l~~~~~~~~~~~V~~G~~ig~~ 294 (297)
T PRK00723 262 FEKNKIK---------IDADILEQSKLGYETKVLMGESIGRK 294 (297)
T ss_pred EcCCccc---------cChhhhhccccCcccEEEcCHHHhhh
Confidence 9999864 3333332 4899999999975
No 9
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=100.00 E-value=1.4e-66 Score=505.80 Aligned_cols=234 Identities=39% Similarity=0.635 Sum_probs=209.2
Q ss_pred cccccC-CcccccccccceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCC
Q 013143 145 LEEAAL-PLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPM 223 (449)
Q Consensus 145 l~E~~~-pl~~Y~Sln~FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~ 223 (449)
|+|+++ ++++|+||||||+|+||||+|||++++++|||||||+|+.+|+|+++ .+.||||++|||.+|||.+.
T Consensus 1 ~~e~~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~ivSPaDG~v~~~~~i~~~--~~~~vKG~~ysl~~lL~~~~---- 74 (238)
T TIGR00163 1 LDEAEKPDLADYRSLNEFFIRPLKLERRPVDKEPNALVSPADGVISEVGIINPN--QILQVKGMDYSLEELLGEKN---- 74 (238)
T ss_pred CchhccCCcccCCCHHHheeecCCCCCCCCCCCCCEEEECCCceeEEEEEecCC--cEEEEcCCcccHHHHcCCCh----
Confidence 689987 49999999999999999999999999999999999999999999874 45699999999999998641
Q ss_pred cccCccccccCcccCCCcccccccccccccCCccccCcccccccCCeE-EEEEEECCCCceeeeeccCcEEEEEEEecCc
Q 013143 224 IEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLY-YCVIYLKPGDYHRIHSPVDWNVLVRRHFSGR 302 (449)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~-~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~ 302 (449)
.+++.+.+|. |++|||||.||||+|||++|+|.+.+|+||+
T Consensus 75 --------------------------------------~~~~~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~~~~ipG~ 116 (238)
T TIGR00163 75 --------------------------------------PLSPYFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRYFPGD 116 (238)
T ss_pred --------------------------------------hHHHhccCCeEEEEEEECccceeEEeccCCcEEEEEEEcCcc
Confidence 1245677777 9999999999999999999999999999999
Q ss_pred eecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCC
Q 013143 303 LFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVG 382 (449)
Q Consensus 303 L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G 382 (449)
||||+|.++++.+++|++|||+++.++|++|.|+|++|||++||+|+++|++++.||... +...++.|.. ..|
T Consensus 117 ~~~v~~~~~~~~~~lf~~NeR~v~~i~~~~G~v~~v~VGA~~Vg~I~~~~~~~i~~~~~~------~~~~~~~y~~-~~g 189 (238)
T TIGR00163 117 LFSVNPLGLQNVPNLFVRNERVILVFDTEFGNMLMIPVGATNVGSIRTNFDGNIQTNPRH------EFTQTWTYNA-LGP 189 (238)
T ss_pred EeccCHHHHhcCCCcceeeeEEEEEEEeCCceEEEEEEeeeEeeEEEEEecCceecCCCc------cceeeEeecc-ccC
Confidence 999999999999999999999999999999999999999999999999999999887431 1234566653 238
Q ss_pred ceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeee
Q 013143 383 MMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGR 438 (449)
Q Consensus 383 ~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~ 438 (449)
..++||||+|+|+|||||||+||++.. .+.+++++||+|++||+||.
T Consensus 190 ~~v~kGee~G~F~fGStVvllf~~~~~---------~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 190 VKLLKGEEMGYFELGSTVILLFEADAF---------QLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred ceeccccEeeeEcCCCeEEEEEeCCCc---------ccChhhccCCEEEcChhhcc
Confidence 899999999999999999999999854 47789999999999999984
No 10
>PLN02964 phosphatidylserine decarboxylase
Probab=100.00 E-value=3.3e-65 Score=550.61 Aligned_cols=280 Identities=26% Similarity=0.378 Sum_probs=241.1
Q ss_pred hhhHHHHHHHhhcccceecchHHHHHHhhcch---HHHHHHHhhhhcCCCCcccchhhHHHHHHHh--CCCcccccCCcc
Q 013143 79 YDDRKVEEAREKGIEIEFKPDAKASFLRLLPL---RSISRIWGFMTSVEYPVWMRPYVYKAWARAF--HSNLEEAALPLG 153 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~LP~---r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~f--ginl~E~~~pl~ 153 (449)
+++|++--....++++.|++.+++.++.++-. +.+|+++|++++++.+ +. .++.|++.| +|||+|+++|++
T Consensus 336 ~~~E~v~~~~~~~~~~lY~~~~G~~~l~~~~~~~l~~~S~~~G~~~dsp~S---~~-~I~~Fi~~~~~~id~~E~~~p~~ 411 (644)
T PLN02964 336 LVEELIDSKIVLSMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMNSVES---AQ-DIPKFLEFFKDQINMDEVKYPLE 411 (644)
T ss_pred EEEEEeeeeehhhHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhHcCChhh---HH-HHHHHHHHhhcCcCHHHhhcCcc
Confidence 34443332333467788999999999999877 7789999999999976 33 569999988 899999999999
Q ss_pred cccccccceeccCCCCCCcCCC--CCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCcccc
Q 013143 154 EYASLREFFVRTLKQGSRPIDH--DPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHE 231 (449)
Q Consensus 154 ~Y~Sln~FF~R~LKpgaRPId~--d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~ 231 (449)
+|+||||||+|+||||+|||+. ++++|||||||+|++++.|+++ ...||||.+|||.+|||++.
T Consensus 412 ~y~SfNdFFtRkLKp~aRPi~~~~~~~~iVSPaDg~v~~~~~i~~~--~~~~IKG~~Ysl~~LLg~~~------------ 477 (644)
T PLN02964 412 HFKTFNEFFIRELKPGARPIACMDNDDVAVCAADCRLMAFQSVDDS--TRFWIKGRKFSIKGLLGKKV------------ 477 (644)
T ss_pred cCCCHHHcceecCCCCCCCCCCCCCCCEEEECCCceeEEeeeecCC--cEEEECCCcccHHHHcCCch------------
Confidence 9999999999999999999984 6779999999999999999873 34599999999999999642
Q ss_pred ccCcccCCCcccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHH
Q 013143 232 QSGEQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERAT 311 (449)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~ 311 (449)
+++.|.+|+++++||||.||||||+|++|+|.+.+|+||+||||||.++
T Consensus 478 -------------------------------~a~~f~gG~~~i~rLsP~DYHR~HsPv~G~v~~~~~I~G~l~sVnp~al 526 (644)
T PLN02964 478 -------------------------------HSDAFLDGSLVIFRLAPQDYHRFHVPVSGVIEKFVDVPGSLYTVNPIAV 526 (644)
T ss_pred -------------------------------hHHhcCCCEEEEEEECCceeceeecCCCCEEEEEEEECCeeEecChhhh
Confidence 3567899999999999999999999999999999999999999999999
Q ss_pred hh-cCCcccceeEEEEEEEec-CeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeeccc
Q 013143 312 RT-IRNLYFENERVVLEGMWQ-EGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGD 389 (449)
Q Consensus 312 ~~-~~~LF~~NERvvl~g~~~-~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGe 389 (449)
+. .+++|++|||+++++++. +|.|++|+|||++||||++++ .+|..|+|||
T Consensus 527 ~~~~~~~f~~NeR~v~~iet~~~G~V~~v~VGA~~VgsI~~~~---------------------------~~g~~v~KGd 579 (644)
T PLN02964 527 NSKYCNVFTENKRAVCIISTAEFGKVAFVAIGATMVGSITFVK---------------------------KEGDHVKKGD 579 (644)
T ss_pred cccccchhhcCeeEEEEEEcCCCCEEEEEEEeeeEeeEEEEEe---------------------------cCCCEEccCc
Confidence 75 689999999999999985 899999999999999999753 2467899999
Q ss_pred Eeeeeec-CCEEEEEeeCCCCC-CCC--CCCCCCceeeeeCCCEEEccceeeeec
Q 013143 390 EVGAFNM-GSTVVLVFQAPTIK-SPN--RGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 390 E~G~F~l-GSTVVLvFea~~~~-~~d--~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
|+|+|+| ||||||+||++++. ++| .++..+++ ++|+|||.||...
T Consensus 580 E~G~F~fGGSTvVllFe~~~i~~d~dl~~~s~~~~E------t~V~~Ge~iG~~~ 628 (644)
T PLN02964 580 ELGYFSFGGSTVICVFEKDAIDIDEDLLANSERSLE------TLVSVGMTLGVST 628 (644)
T ss_pred EeeeeecCCceEEEEecCCCcccChhhhhccccccc------eeEecChhhcccc
Confidence 9999999 69999999999886 444 33333443 6899999999754
No 11
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=100.00 E-value=1.2e-57 Score=432.79 Aligned_cols=202 Identities=45% Similarity=0.722 Sum_probs=186.3
Q ss_pred cccceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCccc
Q 013143 158 LREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQE 237 (449)
Q Consensus 158 ln~FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~ 237 (449)
||+||+|.+|+++|||++++++|||||||+|+.+++|+++ ...||||.+||+++|||++.
T Consensus 1 f~~FF~r~~r~~~R~i~~~~~~ivSPaDG~v~~~~~i~~~--~~~~iKg~~y~l~~ll~~~~------------------ 60 (202)
T PF02666_consen 1 FNDFFTRFFRDPARPIPDDPDAIVSPADGKVLVIGEIEED--SLFQIKGQPYSLRELLGDPS------------------ 60 (202)
T ss_pred ChhHeehhcCCCCCCCCCCCCEEEeCcCcEEEeeEEECCC--ceEEEecCcCCHHHHhCccc------------------
Confidence 7999999999999999999999999999999999999874 35599999999999999731
Q ss_pred CCCcccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCc
Q 013143 238 STPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNL 317 (449)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~L 317 (449)
.+++.+.++++++|||||.||||+|+|++|+|++.+|+||+++||+|.++++.+++
T Consensus 61 ------------------------~~~~~~~~g~~i~i~Lsp~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~~~~ 116 (202)
T PF02666_consen 61 ------------------------PLAEPFQGGTFIVIYLSPFDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHIPGL 116 (202)
T ss_pred ------------------------cceeccCCceEEEEEcCCCcceEEEecCCEEEEEEEEECccccccChHHhhccCCe
Confidence 12456899999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecC
Q 013143 318 YFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMG 397 (449)
Q Consensus 318 F~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lG 397 (449)
|++|||+++.++|++|.|++++|||++||+|++.+|+ ..|..++||||+|+|+||
T Consensus 117 ~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~~-------------------------~~g~~v~kG~e~G~f~fG 171 (202)
T PF02666_consen 117 FAENERVVLVIETKFGKVAVVQVGALLVGSIVLTVDP-------------------------KEGDEVKKGEELGYFRFG 171 (202)
T ss_pred eEEeeEEEEEEEECCCEEEEEEeccceeceeEEEecc-------------------------cCCCEEecCcEeCEEecC
Confidence 9999999999999999999999999999999986643 147899999999999999
Q ss_pred CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeee
Q 013143 398 STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGR 438 (449)
Q Consensus 398 STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~ 438 (449)
|||+|+||++.+ +++.+++||+|+|||+||.
T Consensus 172 Stvvl~f~~~~~----------~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 172 STVVLLFPKDKI----------FEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred CeEEEEEeCCCc----------cccccCCCCEEEeeeEEeC
Confidence 999999999974 5889999999999999984
No 12
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-55 Score=457.17 Aligned_cols=268 Identities=29% Similarity=0.443 Sum_probs=227.9
Q ss_pred hhcccceecchHHHHHHhh---cchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCcccccccccceecc
Q 013143 89 EKGIEIEFKPDAKASFLRL---LPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRT 165 (449)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~---LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~ 165 (449)
..|++..|++-..+.++.- --|+.+|---|+-+++..+ ..-++.|++.|.+||+|...|+.+|++|||||||+
T Consensus 680 ~lgmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~S----ak~I~pFi~Ff~lnm~ev~~p~~~FKTFNEFFyRk 755 (975)
T KOG2419|consen 680 VLGMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVES----AKQIPPFIEFFKLNMAEVKYPLKHFKTFNEFFYRK 755 (975)
T ss_pred eeehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhh----hhhcchHHhhhhcchhhhcCccccchhHHHHHHHh
Confidence 4566666766655444321 1256778888998888876 22358899999999999999999999999999999
Q ss_pred CCCCCCcCC--CCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCccc
Q 013143 166 LKQGSRPID--HDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEK 243 (449)
Q Consensus 166 LKpgaRPId--~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (449)
||||+||++ .+++++|||||+++++|..|++. .++ ||||..|||+.|||-+-
T Consensus 756 LKPGsRp~a~~nn~dIlvspADsR~~af~~Ie~s-t~~-WIKGrkFsik~Llg~n~------------------------ 809 (975)
T KOG2419|consen 756 LKPGSRPIACMNNKDILVSPADSRLMAFQSIEDS-TRF-WIKGRKFSIKGLLGYNV------------------------ 809 (975)
T ss_pred cCCCCcccCCCCCCceeecccccceEeeeeeccc-ceE-EEeccEEehhHhhCCCC------------------------
Confidence 999999997 56789999999999999999975 566 99999999999999542
Q ss_pred ccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeE
Q 013143 244 TKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENER 323 (449)
Q Consensus 244 ~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NER 323 (449)
.++.|.+|..++++|||+|||||||||+|+|....++.|++|.|||.|.+..-++|.+|.|
T Consensus 810 -------------------n~~~F~dgSi~IfRLAPQDYHRFHsPvnG~Igk~v~v~G~yYTVNPmAvrSyldVFgEN~R 870 (975)
T KOG2419|consen 810 -------------------NPEAFLDGSIVIFRLAPQDYHRFHSPVNGVIGKFVYVSGSYYTVNPMAVRSYLDVFGENKR 870 (975)
T ss_pred -------------------CchhccCCcEEEEEeccchhhhccCcccccccCceEecceEEEechHHHHhhhhhhcCceE
Confidence 1346788888888999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe-cCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeec-CCEEE
Q 013143 324 VVLEGMW-QEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM-GSTVV 401 (449)
Q Consensus 324 vvl~g~~-~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l-GSTVV 401 (449)
|++.+++ .+|.+++|+||||+||||.++. ++|..|+||||+|+|+| ||||+
T Consensus 871 viipIds~eFGKv~~VaiGAmMVGSi~lt~---------------------------kEgd~V~~gdELGYFkFGGSTVI 923 (975)
T KOG2419|consen 871 VIIPIDSAEFGKVAFVAIGAMMVGSILLTR---------------------------KEGDHVKKGDELGYFKFGGSTVI 923 (975)
T ss_pred EEEEecchhhccEEEEeecceeeeeEEEEe---------------------------ecCcccccccccceEeeCCeeEE
Confidence 9999987 6899999999999999999854 45889999999999999 79999
Q ss_pred EEeeCCCCC-CCC--CCCCCCceeeeeCCCEEEccceeee
Q 013143 402 LVFQAPTIK-SPN--RGDNSNFRFCIKRGDKIRVGEGLGR 438 (449)
Q Consensus 402 LvFea~~~~-~~d--~~~~~~~~~~v~~G~kVk~Gq~LG~ 438 (449)
+|||++.+. ++| .|++...+ +-|+||+.||.
T Consensus 924 ~vfe~n~~~fDeDLl~NS~~~iE------TLVkvGm~iGv 957 (975)
T KOG2419|consen 924 CVFEKNNIMFDEDLLKNSSRSIE------TLVKVGMQIGV 957 (975)
T ss_pred EEEcCCcccccHHHHhcchhhHH------HHHHHHHhhce
Confidence 999999887 555 44444444 56788888884
No 13
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=100.00 E-value=1.1e-52 Score=407.87 Aligned_cols=234 Identities=32% Similarity=0.477 Sum_probs=211.3
Q ss_pred HHhhcchHHHHHHHhhhhcCCCCcccchhhHHHHHHHhCCCcccccCCcccccccccceeccCCCCCCcCCCCCCeeEec
Q 013143 104 FLRLLPLRSISRIWGFMTSVEYPVWMRPYVYKAWARAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSP 183 (449)
Q Consensus 104 ll~~LP~r~iSr~~G~~~~~~lP~~lr~~i~k~y~~~fginl~E~~~pl~~Y~Sln~FF~R~LKpgaRPId~d~~~lVSP 183 (449)
++++||..+++|+||+++....|.|+..+.++.|++.|.+|++|++.|++.|.+||+||+|.|+++.||||++ ++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp~---~v~P 78 (239)
T COG0688 2 LRYLLPELSLTRLFGLLAGVRSPSPIIKREIYPFIAAFLVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDPE---RVSP 78 (239)
T ss_pred cccccchhhhhhhHHHHhhhcCCCceeehhhhhHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCCC---ccCC
Confidence 3578999999999999999999999999999999999999999999989999999999999999999999986 8999
Q ss_pred CCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCcccCCCcccccccccccccCCccccCccc
Q 013143 184 VDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQESTPTEKTKKSWWSISLASPRVRDTAT 263 (449)
Q Consensus 184 aDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 263 (449)
+||+++..+ +||+.||+++||+.+. ++
T Consensus 79 ~D~~i~~~p-----------akG~~~sv~~ll~~~~------------------------------------------el 105 (239)
T COG0688 79 ADGRIVVSP-----------ADGRVYSVEELLGPDD------------------------------------------EL 105 (239)
T ss_pred CCCcEEEec-----------CCCeEEEHHHhcCChh------------------------------------------hh
Confidence 999999877 8999999999998542 23
Q ss_pred ccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecce
Q 013143 264 TRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGAT 343 (449)
Q Consensus 264 ~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAt 343 (449)
+..++++.+++|||||.||||+|||+||+|.+++|++|+++||+|.. +|++|||+++++++++|.|++|+|||+
T Consensus 106 ~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~~~~~G~~~~v~~~~------~~~~NER~~~~i~t~~g~v~~v~Vga~ 179 (239)
T COG0688 106 AYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEVRYVPGKFFSANLDK------AFTENERNSVLIETEQGKVVVVQVAGL 179 (239)
T ss_pred ccccCCceEEEEEeCcceeeeEeCCCCCEEEEEEEECCceeccChhh------hhcccceEEEEEEcCCCcEEEEEEhhh
Confidence 45688999999999999999999999999999999999999999976 899999999999999999999999999
Q ss_pred ecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeecC---CEEEEEeeCCCCCCCCCCCCCCc
Q 013143 344 NIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNMG---STVVLVFQAPTIKSPNRGDNSNF 420 (449)
Q Consensus 344 nVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~lG---STVVLvFea~~~~~~d~~~~~~~ 420 (449)
+||||+.+++ +|+.+++|||+|+|+|| |||+++|+++.+ .+
T Consensus 180 ~v~~Iv~~~~---------------------------~~~~v~~G~~~G~~~fGs~gstvip~~~~~~v---------~~ 223 (239)
T COG0688 180 VARRIVCYVK---------------------------EGDTVKKGERIGGIRFGSRGSTVLPLFAEPRV---------AV 223 (239)
T ss_pred eeeEEEEEec---------------------------CCcEEEhhhhhhhhhhCCcccEEEecCCCcee---------ee
Confidence 9999998663 36789999999999998 999999999864 35
Q ss_pred eeeeeCCCEEEccce
Q 013143 421 RFCIKRGDKIRVGEG 435 (449)
Q Consensus 421 ~~~v~~G~kVk~Gq~ 435 (449)
...+..|++|++|+.
T Consensus 224 ~~~v~~g~tv~~~~~ 238 (239)
T COG0688 224 GERVVAGETVLAGEK 238 (239)
T ss_pred ccccccCceEEeeec
Confidence 555666666666654
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=100.00 E-value=2.8e-40 Score=311.43 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=146.5
Q ss_pred ccccccceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccC
Q 013143 155 YASLREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSG 234 (449)
Q Consensus 155 Y~Sln~FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~ 234 (449)
+..|+.||+|+ | .||++++++.++|||||+|..++++.+. +.|+
T Consensus 15 ~~~~~~~ffR~--p-~R~~~~~~~~ivSPaDG~v~~i~~~~~~----------------~~~g----------------- 58 (189)
T TIGR00164 15 FTLFTLQFFRD--P-DREIPQGPEAVLSPADGRIDVVERARRP----------------FPDG----------------- 58 (189)
T ss_pred HHHHHHHhcCC--C-CCCCCCCCCEEEeCCCcEEEEEEeeccc----------------cCCC-----------------
Confidence 44588999998 4 8999999999999999999987654320 1121
Q ss_pred cccCCCcccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhc
Q 013143 235 EQESTPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTI 314 (449)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~ 314 (449)
...+++|||||.||||+|||++|+|++.+|++|+++|++ .
T Consensus 59 ----------------------------------~~~~i~I~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~~~------~ 98 (189)
T TIGR00164 59 ----------------------------------DGLKISIFMSPFDVHVNRAPAGGKVTYVKHIDGSFVPAF------L 98 (189)
T ss_pred ----------------------------------cEEEEEEEcCCcccceEEcccccEEEEEEEECCeEeecc------c
Confidence 136899999999999999999999999999999999975 3
Q ss_pred CCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeee
Q 013143 315 RNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAF 394 (449)
Q Consensus 315 ~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F 394 (449)
+++|.+|||+++.+++++|.+++++||++.+++|.... .+|..++||||+|+|
T Consensus 99 ~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i~~~~---------------------------~~g~~v~kGeeiG~f 151 (189)
T TIGR00164 99 RKASTENERNAVLIKTASGEVGVVQIAGFVARRIVCYV---------------------------KEGEKVSRGQRIGMI 151 (189)
T ss_pred CcccccceeEEEEEEcCCCCEEEEEECeEEccEEEEec---------------------------CCCCEEecCcEEEEE
Confidence 67899999999999999999999999999999997521 347899999999999
Q ss_pred ecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccce-eeeec
Q 013143 395 NMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEG-LGRWQ 440 (449)
Q Consensus 395 ~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~-LG~~~ 440 (449)
+|||||+|+||++ ++++|++||+|++||+ ||++.
T Consensus 152 ~fGStv~ll~p~~------------~~~~v~~G~~V~~G~tli~~~~ 186 (189)
T TIGR00164 152 RFGSRVDLYLPEN------------AQAQVKVGEKVTAGETVLARLP 186 (189)
T ss_pred ecCCeEEEEEcCC------------CccccCCCCEEEeceEEEEEec
Confidence 9999999999975 5678999999999998 66653
No 15
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.1e-38 Score=304.25 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=147.2
Q ss_pred cccceeccCCCCCCcCCCCCCeeEecCCcEEEEEeeeeCCCceEEeeeCCccchhhhcCCCCCCCCcccCccccccCccc
Q 013143 158 LREFFVRTLKQGSRPIDHDPHCLVSPVDGIVLRVGELKGVGAKIEQVKGFSYSVSSLLGSSSFLPMIEEGDMHEQSGEQE 237 (449)
Q Consensus 158 ln~FF~R~LKpgaRPId~d~~~lVSPaDGkVl~~G~I~~~~~~ieqVKG~~YSl~~LLG~~~~~~~~~~~~~~~~~~~~~ 237 (449)
|..||+|+ | .||+++|++.++|||||+|..+++++++ +++..
T Consensus 37 ~~~~ffRd--p-~R~~~~~~~~i~SPaDG~v~~i~~v~d~----------------~~~~~------------------- 78 (206)
T PRK05305 37 FCLYFFRD--P-ERVIPTDDGLVVSPADGKVVVIEEVVPP----------------YGDEP------------------- 78 (206)
T ss_pred HHHheecC--C-CCCCCCCCCEEEeCCCcEEEEEEEECCC----------------ccCCc-------------------
Confidence 77899999 6 8999999999999999999999988751 24421
Q ss_pred CCCcccccccccccccCCccccCcccccccCCeEEEEEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCc
Q 013143 238 STPTEKTKKSWWSISLASPRVRDTATTRPVKGLYYCVIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNL 317 (449)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~gg~~~vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~L 317 (449)
..+++|||+|.||||+|||++|+|++.+|++|+++||+. +..
T Consensus 79 --------------------------------~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~~G~~~~~~~------~~~ 120 (206)
T PRK05305 79 --------------------------------RLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNAFL------DKA 120 (206)
T ss_pred --------------------------------eEEEEEEECcccCCEEEeCccCEEEEEEEECCeEEecCC------Ccc
Confidence 247899999999999999999999999999999999963 567
Q ss_pred ccceeEEEEEEEec-CeeEEEEEecceecCeeEEeecCccccCCccccccCCCCCCceecccCCCCceeecccEeeeeec
Q 013143 318 YFENERVVLEGMWQ-EGYLAMAAVGATNIGSIELVIEPELRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM 396 (449)
Q Consensus 318 F~~NERvvl~g~~~-~G~~a~v~VGAtnVGsI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l 396 (449)
+.+|||+++.++|+ +|.++|++|||+++++|+... .+|+.++||||+|+|+|
T Consensus 121 ~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~~~~---------------------------~~g~~v~kGe~~G~f~f 173 (206)
T PRK05305 121 SEENERNAVVIETADGGEIGVVQIAGLIARRIVCYV---------------------------KEGDEVERGERFGLIRF 173 (206)
T ss_pred cccCceEEEEEEeCCCCEEEEEEeCeEEccEEEEeC---------------------------CCCCEEccCcEEeEEec
Confidence 99999999999997 689999999999999997521 34789999999999999
Q ss_pred CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccce-eeee
Q 013143 397 GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEG-LGRW 439 (449)
Q Consensus 397 GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~-LG~~ 439 (449)
||||+|+||++ .+++|++||+|++||+ ||++
T Consensus 174 GStV~l~~p~~------------~~~~V~~G~kV~~Getvi~~~ 205 (206)
T PRK05305 174 GSRVDVYLPLG------------TEPLVSVGQKVVAGETVLARL 205 (206)
T ss_pred CCeEEEEEcCC------------CcccccCCCEEEcccEEEEEc
Confidence 99999999886 5788999999999998 7764
No 16
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.57 E-value=0.075 Score=47.51 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=14.0
Q ss_pred eEecCCcEEEEEeeeeC
Q 013143 180 LVSPVDGIVLRVGELKG 196 (449)
Q Consensus 180 lVSPaDGkVl~~G~I~~ 196 (449)
|+||++|++....++.+
T Consensus 1 i~aPv~G~~~~l~~v~D 17 (124)
T cd00210 1 LASPITGEIVPLDQVPD 17 (124)
T ss_pred CccccceEEEEhhhCcC
Confidence 57999999998877765
No 17
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.36 E-value=0.32 Score=45.78 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=44.5
Q ss_pred ECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCcc
Q 013143 277 LKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPEL 356 (449)
Q Consensus 277 LsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l 356 (449)
.-|.| +.++||++|+|..... .+-++-++++.|.=.++=||- .++.++=+
T Consensus 53 I~P~~-~~v~AP~dG~V~~vf~-----------------------T~HAigi~t~~G~eiLIHiGi---DTV~L~G~--- 102 (169)
T PRK09439 53 IKPTG-NKMVAPVDGTIGKIFE-----------------------TNHAFSIESDSGVELFVHFGI---DTVELKGE--- 102 (169)
T ss_pred EEccC-CEEEecCCeEEEEEcC-----------------------CCCEEEEEeCCCcEEEEEEee---cccccCCC---
Confidence 34556 7899999999965321 123444456667666666665 33333100
Q ss_pred ccCCccccccCCCCCCceecccCCCCceeecccEeeeeec
Q 013143 357 RTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM 396 (449)
Q Consensus 357 ~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l 396 (449)
.+. . ....|+.+++||.+..|.+
T Consensus 103 -------------gF~-~---~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 103 -------------GFK-R---IAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred -------------ceE-E---EecCCCEEeCCCEEEEEcH
Confidence 000 0 1357999999999999986
No 18
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=93.82 E-value=0.79 Score=51.47 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=61.3
Q ss_pred EECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCc
Q 013143 276 YLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPE 355 (449)
Q Consensus 276 YLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~ 355 (449)
-.-|.| +.++||+||+|+... ...-++-++++.|.-.++-||- .+++++-++
T Consensus 530 aI~P~~-~~v~AP~~G~v~~v~-----------------------~T~HA~gi~t~~G~eiLIHiGi---dTV~l~G~g- 581 (648)
T PRK10255 530 AVKPTD-KIVVSPAAGTIVKIF-----------------------NTNHAFCLETEKGAEIVVHMGI---DTVALEGKG- 581 (648)
T ss_pred EEeCCC-CeEEecCCeEEEEEc-----------------------CCCcEEEEEcCCCCEEEEEecc---chhccCCCC-
Confidence 445666 799999999996532 1123344456677767776665 333332100
Q ss_pred cccCCccccccCCCCCCceecccCCCCceeecccEeeeeec------C--CEEEEEeeCCCCCCCCCCCCCCce-eeeeC
Q 013143 356 LRTNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM------G--STVVLVFQAPTIKSPNRGDNSNFR-FCIKR 426 (449)
Q Consensus 356 l~TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l------G--STVVLvFea~~~~~~d~~~~~~~~-~~v~~ 426 (449)
..+ ..++|+.+++||.+..|.+ | .++.+++-... +++ .....
T Consensus 582 F~~-------------------~Vk~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtN~~----------~~~~~~~~~ 632 (648)
T PRK10255 582 FKR-------------------LVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNID----------DFSGLIIKA 632 (648)
T ss_pred ceE-------------------EecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccc----------cccceeecc
Confidence 000 1357999999999999976 3 34444444332 122 22333
Q ss_pred CCEEEccce-eeee
Q 013143 427 GDKIRVGEG-LGRW 439 (449)
Q Consensus 427 G~kVk~Gq~-LG~~ 439 (449)
...|..|+. +..+
T Consensus 633 ~~~v~~g~~~~~~i 646 (648)
T PRK10255 633 QGHVVAGQTPLYEI 646 (648)
T ss_pred CCceecCCceEEEE
Confidence 456888875 5543
No 19
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.41 E-value=0.53 Score=37.08 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++..+-+ .++.+..+..-. =.++.++.||.|..||.|+++
T Consensus 18 ~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~---------v~~~~~~~G~~V~~g~~l~~i 69 (70)
T PRK08225 18 KVGDTVEEGQDVVILESMKMEIPIVAEEAGT---------VKKINVQEGDFVNEGDVLLEI 69 (70)
T ss_pred CCCCEECCCCEEEEEEcCCCcceEeCCCCEE---------EEEEEecCCCEECCCCEEEEE
Confidence 458999999999998775 345555554321 135778999999999999875
No 20
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=90.75 E-value=1.5 Score=39.05 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=15.2
Q ss_pred CCCceeecccEeeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM 396 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l 396 (449)
+.|+.+++||.+..|.+
T Consensus 87 ~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 87 EEGQRVKKGDPLLEFDL 103 (121)
T ss_pred cCCCEEcCCCEEEEEcH
Confidence 57899999999999984
No 21
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=90.54 E-value=2.4 Score=47.38 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=60.2
Q ss_pred CCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccc
Q 013143 278 KPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELR 357 (449)
Q Consensus 278 sP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~ 357 (449)
-|.| +.++||+||+|.... ..+-++-.+++.|.-.++-||- .+++++
T Consensus 496 ~P~~-~~v~aP~~G~v~~~~-----------------------~t~Ha~gi~~~~G~eiliHiGi---dTv~l~------ 542 (610)
T TIGR01995 496 LPTE-GEVVAPVDGTVTAVF-----------------------PTKHAIGIRSDNGIEILIHVGI---DTVELN------ 542 (610)
T ss_pred eCCC-CEEECCCCeEEEEEc-----------------------CCCCEEEEEECCCcEEEEEecc---chhccC------
Confidence 4666 689999999996421 1123444456667666666665 222221
Q ss_pred cCCccccccCCCCCCceecccCCCCceeecccEeeeeec------C-C-EEEEEeeC-CCCCCCCCCCCCCceeeeeCCC
Q 013143 358 TNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM------G-S-TVVLVFQA-PTIKSPNRGDNSNFRFCIKRGD 428 (449)
Q Consensus 358 TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l------G-S-TVVLvFea-~~~~~~d~~~~~~~~~~v~~G~ 428 (449)
.. ..+ . ..++|+.+++||.+..|.+ | | ++.+++-. +.. -......+.
T Consensus 543 --g~--------gF~--~--~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~----------~~~~~~~~~ 598 (610)
T TIGR01995 543 --GE--------GFE--I--LVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDF----------LDVIPTDKE 598 (610)
T ss_pred --CC--------CeE--E--EecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccc----------cceeeccCC
Confidence 00 000 0 1357999999999999976 4 3 44444433 321 122344556
Q ss_pred EEEccceeeee
Q 013143 429 KIRVGEGLGRW 439 (449)
Q Consensus 429 kVk~Gq~LG~~ 439 (449)
.|+.|+.+.++
T Consensus 599 ~~~~~~~~~~~ 609 (610)
T TIGR01995 599 TVTAGDVLLRL 609 (610)
T ss_pred cccCCCeeEEe
Confidence 78888876643
No 22
>PRK07051 hypothetical protein; Validated
Probab=88.74 E-value=1.2 Score=36.39 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|..+++||.+|..+-- ..+.+-.+.+-. =.++.++.|+.|+.||.|+.+.
T Consensus 27 ~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~---------v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 27 EVGDAVAAGDVVGLIEVMKQFTEVEAEAAGR---------VVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCCEECCCCEEEEEEEcceEEEEeCCCCEE---------EEEEEcCCcCEECCCCEEEEEe
Confidence 468999999999998873 334443333321 1357789999999999999863
No 23
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=88.25 E-value=1.1 Score=40.54 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCcccc
Q 013143 279 PGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELRT 358 (449)
Q Consensus 279 P~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~T 358 (449)
|.+ ..+.||++|+|+... . ..-++.++++.|.=.++-||.--| .+
T Consensus 37 p~~-~~v~AP~~G~v~~i~---------------------~--T~HAi~i~s~~G~eiLiHiGidTv---~L-------- 81 (132)
T PF00358_consen 37 PSD-GKVYAPVDGTVTMIF---------------------P--TKHAIGIRSDNGVEILIHIGIDTV---KL-------- 81 (132)
T ss_dssp ESS-SEEEESSSEEEEEE----------------------T--TSSEEEEEETTSEEEEEE-SBSGG---GG--------
T ss_pred cCC-CeEEEEeeEEEEEEc---------------------C--CCCEEEEEeCCCCEEEEEEccchh---hc--------
Confidence 444 478899999996521 1 123444567778777888876322 11
Q ss_pred CCccccccCCCCCCceecc-cCCCCceeecccEeeeeec
Q 013143 359 NQPRKKLLHSEPPEERVYE-PQGVGMMLKKGDEVGAFNM 396 (449)
Q Consensus 359 N~~~~~~~~~~~~~~~~y~-~~~~G~~l~KGeE~G~F~l 396 (449)
|.. .|+ ....|+.+++||.+..|.+
T Consensus 82 ~G~-------------gF~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 82 NGE-------------GFETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp TTT-------------TEEESS-TTSEE-TTEEEEEE-H
T ss_pred CCc-------------ceEEEEeCCCEEECCCEEEEEcH
Confidence 100 011 1357999999999999975
No 24
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=88.17 E-value=3.7 Score=46.11 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeecCccc
Q 013143 278 KPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIEPELR 357 (449)
Q Consensus 278 sP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d~~l~ 357 (449)
-|.| ..++||+||+|+... . .+-++-.+++.|.=.++=||- .+++++ .+
T Consensus 512 ~P~~-~~v~AP~~G~v~~vf---------------------~--T~HAigi~t~~G~eiLiHiGi---DTV~L~--G~-- 560 (627)
T PRK09824 512 LPSV-GEVRSPVAGRVASLF---------------------A--TLHAIGLESDDGVEVLIHVGI---DTVKLD--GK-- 560 (627)
T ss_pred cCCC-CeEEccCCeEEEEEc---------------------C--CCcEEEEEeCCCcEEEEEech---hhhhcC--CC--
Confidence 4666 589999999997431 1 123444566677777776665 223221 00
Q ss_pred cCCccccccCCCCCCceecccCCCCceeecccEeeeeec------C-C-EEEEEeeCCCCCCCCCCCCCCce-eeeeCCC
Q 013143 358 TNQPRKKLLHSEPPEERVYEPQGVGMMLKKGDEVGAFNM------G-S-TVVLVFQAPTIKSPNRGDNSNFR-FCIKRGD 428 (449)
Q Consensus 358 TN~~~~~~~~~~~~~~~~y~~~~~G~~l~KGeE~G~F~l------G-S-TVVLvFea~~~~~~d~~~~~~~~-~~v~~G~ 428 (449)
.++ . ..++|+.+++||.+..|.+ | + |+.+++-... +++ .....+.
T Consensus 561 ------------gF~-~---~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~----------~~~~~~~~~~~ 614 (627)
T PRK09824 561 ------------FFT-A---HVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSD----------DYTDVLPHATA 614 (627)
T ss_pred ------------Cce-E---EecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEccc----------cccceeeccCC
Confidence 010 0 1357999999999999976 4 3 4444444332 111 1223445
Q ss_pred EEEccceeeee
Q 013143 429 KIRVGEGLGRW 439 (449)
Q Consensus 429 kVk~Gq~LG~~ 439 (449)
.|+.|+.+..+
T Consensus 615 ~v~~~~~~~~~ 625 (627)
T PRK09824 615 QVSAGEPLLSI 625 (627)
T ss_pred cccCCCeEEEe
Confidence 68888876544
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=77.07 E-value=6.4 Score=31.12 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.+..-+-. .++.+..+.+-. =.+..+++|+.|+.|+.|+.+
T Consensus 19 ~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~---------V~~i~v~~G~~V~~G~~l~~i 70 (71)
T PRK05889 19 NEGDQIGKGDTLVLLESMKMEIPVLAEVAGT---------VSKVSVSVGDVIQAGDLIAVI 70 (71)
T ss_pred CCCCEECCCCEEEEEEeccceeEEeCCCCEE---------EEEEEeCCCCEECCCCEEEEE
Confidence 468999999999977763 334444443321 145678999999999999875
No 26
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=75.86 E-value=1.5 Score=43.40 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=50.6
Q ss_pred hHHHHHHHhhhhcCCCCcccchhhHHHHH---HHhCCCcccccCCcccccccccceeccCCCCCCcCCCCCCeeEecCCc
Q 013143 110 LRSISRIWGFMTSVEYPVWMRPYVYKAWA---RAFHSNLEEAALPLGEYASLREFFVRTLKQGSRPIDHDPHCLVSPVDG 186 (449)
Q Consensus 110 ~r~iSr~~G~~~~~~lP~~lr~~i~k~y~---~~fginl~E~~~pl~~Y~Sln~FF~R~LKpgaRPId~d~~~lVSPaDG 186 (449)
.+.+|.+.++.+...+-.+.-.+.++.|. ..+.--+..+.--..-+.-+-.+|+|.+.|+ |-...|+.+++|||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~fi~~~~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp~-~v~P~D~~i~~~pakG 90 (239)
T COG0688 12 TRLFGLLAGVRSPSPIIKREIYPFIAAFLVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDPE-RVSPADGRIVVSPADG 90 (239)
T ss_pred hhhHHHHhhhcCCCceeehhhhhHHHHHHhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCCC-ccCCCCCcEEEecCCC
Confidence 35667777777776654443333333332 2222222222211233445556677876676 5455567899999999
Q ss_pred EEEEEeeeeC
Q 013143 187 IVLRVGELKG 196 (449)
Q Consensus 187 kVl~~G~I~~ 196 (449)
++..+.++.+
T Consensus 91 ~~~sv~~ll~ 100 (239)
T COG0688 91 RVYSVEELLG 100 (239)
T ss_pred eEEEHHHhcC
Confidence 9998887765
No 27
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=75.23 E-value=7.2 Score=29.26 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++...-.. ...-..+|.. + ....++.|+.|..|+.|+.+
T Consensus 16 ~~G~~v~~g~~l~~i~~~~-~~~~i~ap~~---------G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 16 KEGDKVEAGQPLAVLEAMK-MENEVTAPVA---------GVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CCCCEECCCCEEEEEEccc-EEEEEeCCCC---------EEEEEEEECCCCEECCCCEEEEC
Confidence 4588999999999886422 2233444431 2 34567889999999998753
No 28
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=71.64 E-value=8.3 Score=30.82 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.+...+-. ..+-+ ++|.. + -+..++.|+.|..|+.|+.+
T Consensus 23 ~~G~~V~~G~~l~~iet~K~~~~v--~a~~~---------G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 23 EEGDKVKKGDPLAEIETMKMEMEV--EAPVS---------GIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp STTEEESTTSEEEEEESSSEEEEE--EBSSS---------EEEEEESSTTTEEEETTSEEEEE
T ss_pred CCCCEEEcCceEEEEEcCccceEE--ECCCC---------EEEEEEEECCCCEECCCCEEEEC
Confidence 579999999999999873 44433 44431 2 34567889999999999864
No 29
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=68.84 E-value=4.4 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCCCCCceeeeeCCCEEEccceeeeecccccc
Q 013143 414 RGDNSNFRFCIKRGDKIRVGEGLGRWQESCNE 445 (449)
Q Consensus 414 ~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~~~~ 445 (449)
.....++.+..+.||+|+.||.|.++..+..+
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCChH
Confidence 55566899999999999999999998754433
No 30
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=67.42 E-value=4.8 Score=29.97 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.3
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
-++.|+.||.|+.||.|.++...
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcH
Confidence 35779999999999999988643
No 31
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=62.22 E-value=26 Score=32.45 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|+.+++||.++..+- -...-+.-+..-. =-++.++.|+.|..||.|.++
T Consensus 104 ~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~---------v~~i~v~~g~~V~~Gq~L~~i 155 (156)
T TIGR00531 104 EVGDKVKKGQIVCIVEAMKLMNEIEAEVAGK---------VVEILVENGQPVEYGQPLIVI 155 (156)
T ss_pred cCCCEeCCCCEEEEEEecccceEEecCCCcE---------EEEEEeCCCCEECCCCEEEEE
Confidence 57999999999888876 3444443333211 035789999999999999875
No 32
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=61.42 E-value=7.8 Score=34.57 Aligned_cols=22 Identities=18% Similarity=0.521 Sum_probs=20.0
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+..++.||+|++||.|.++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 3888899999999999999986
No 33
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=57.50 E-value=16 Score=38.09 Aligned_cols=82 Identities=12% Similarity=-0.051 Sum_probs=53.4
Q ss_pred eeEEeecCccccCCccccccCCCCCCceecccCC--CCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCCceeee
Q 013143 347 SIELVIEPELRTNQPRKKLLHSEPPEERVYEPQG--VGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCI 424 (449)
Q Consensus 347 sI~i~~d~~l~TN~~~~~~~~~~~~~~~~y~~~~--~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v 424 (449)
++.+.++..+.++.|..- -.-+++.+|++.... .|..+. +.+.+.+.++++.||.++... +.+|..
T Consensus 222 ~~~~~Ly~~VIYLaPGDY-H~fHSP~dWv~t~rRHf~G~l~s-vsp~~~~~l~~lf~LnerV~l----------~G~wkh 289 (382)
T KOG2420|consen 222 RPGTELYQCVIYLAPGDY-HRFHSPADWVATVRRHFPGLLLS-VSPTLARWLPNLFCLNERVVL----------LGSWKH 289 (382)
T ss_pred CcccceeEEEEEccCCcc-cccCChHHhhhhhhhcccCcccc-cChhhhccCCceEEEEEEeee----------cceeee
Confidence 444444444555554320 011345567765321 344444 999999999999999999986 367777
Q ss_pred eCCCEEEccce-eeeec
Q 013143 425 KRGDKIRVGEG-LGRWQ 440 (449)
Q Consensus 425 ~~G~kVk~Gq~-LG~~~ 440 (449)
.-++.+.+|-+ +|.+.
T Consensus 290 GFfs~taVGATNvGsI~ 306 (382)
T KOG2420|consen 290 GFFSMTAVGATNVGSIV 306 (382)
T ss_pred ceeeeeeeccCccceEE
Confidence 77899999998 66554
No 34
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=56.27 E-value=1.4e+02 Score=28.74 Aligned_cols=20 Identities=25% Similarity=0.183 Sum_probs=16.7
Q ss_pred eeeccCcEEEEEEEecCcee
Q 013143 285 IHSPVDWNVLVRRHFSGRLF 304 (449)
Q Consensus 285 ~HsPv~g~v~~~rh~~G~L~ 304 (449)
+-||+||+|.....++.+++
T Consensus 56 i~SPaDG~v~~i~~v~d~~~ 75 (206)
T PRK05305 56 VVSPADGKVVVIEEVVPPYG 75 (206)
T ss_pred EEeCCCcEEEEEEEECCCcc
Confidence 67999999999998887543
No 35
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=56.10 E-value=20 Score=36.22 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.+++||.++..+= -..+.+.-+..-. --++.++.|+.|..||.|+.+.
T Consensus 221 kvGDsVkkGQvLavIEAMKmeieV~AP~sGt---------V~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 221 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGT---------IVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCCCEecCCCEEEEEEeeceeeEEecCCCeE---------EEEEecCCCCEeCCCCEEEEec
Confidence 46899999999999987 4555544443321 0357789999999999998763
No 36
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=55.76 E-value=8.6 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=18.4
Q ss_pred CceeeeeCCCEEEccceeeeecc
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
+|+..++.||+|++||.|.++..
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-H
T ss_pred ceEEEEeCCCEEECCCEEEEEcH
Confidence 69999999999999999998863
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=52.28 E-value=27 Score=34.95 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCC-ceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSN-FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~-~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|+.|++||.++..+- -.++. .++|.. +- -+..++.|+.|..||.|+.+.+
T Consensus 25 ~~g~~v~~~~~~~~~e~~k~~~~--~~a~~~--------g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 25 QEGDEVEKGDELLDVETDKITNE--VEAPAA--------GTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred CCCCEeCCCCEEEEEEecceeEE--EecCCC--------eEEEEEEcCCCCEeCCCCEEEEEec
Confidence 57999999999999763 23333 344421 01 3467899999999999998864
No 38
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=51.78 E-value=11 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=32.3
Q ss_pred eecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 385 LKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 385 l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+.+...+=...+-.++++-+.-... ...+..|++||+|+.||.||+..
T Consensus 15 ~s~~~~i~~~~~p~~v~ipL~qh~G--------~~~~p~V~~Gd~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 15 LSKDKPIEEAPLPKKVVIPLRQHIG--------APAEPVVKVGDKVKKGQLIAEAE 62 (101)
T ss_pred cccCCCeEECCCcCEEEEECcccCC--------CcceEEEcCCCEEcCCCEEEecC
Confidence 3444455555566666666654321 12678899999999999999764
No 39
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=51.72 E-value=11 Score=35.16 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCCCCCeeEecCCcEEEEE
Q 013143 173 IDHDPHCLVSPVDGIVLRV 191 (449)
Q Consensus 173 Id~d~~~lVSPaDGkVl~~ 191 (449)
|.|..+.++||+||+|..+
T Consensus 38 I~P~~g~vvAPvdG~v~~i 56 (156)
T COG2190 38 IKPSEGEVVAPVDGTVVLI 56 (156)
T ss_pred EecCCCeEEeccCcEEEEE
Confidence 5566789999999998754
No 40
>PRK06748 hypothetical protein; Validated
Probab=50.97 E-value=32 Score=28.73 Aligned_cols=50 Identities=8% Similarity=-0.009 Sum_probs=36.7
Q ss_pred CCCceeecccEeeeeec-C-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM-G-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-G-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+.|..+++||.+-..+= - -++ -.++|.. + -++.++.|+.|..||.|+.+.
T Consensus 21 k~GD~V~~gd~l~~IETMdK~~~--ei~Ap~~---------G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 21 RESSYVYEWEKLALIETIDKQKV--EIKVGIS---------GYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred CCCCEECCCCEEEEEEcCCCceE--EEecCCC---------EEEEEEEeCCCCEECCCCEEEEEE
Confidence 56899999999987763 2 233 4555532 2 256789999999999999875
No 41
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=50.48 E-value=16 Score=34.48 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=20.5
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+..|+.||+|+.||.|.++.
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 5999999999999999999875
No 42
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=49.30 E-value=50 Score=29.92 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.+++||- +++.||=+..-+-.-..++ -++.|+.||.|..||.|..+.
T Consensus 87 ~vGd~V~~Gq~----------l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 87 EVGDTVKAGQT----------LAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ccCCEEcCCCE----------EEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 56899999984 4556653321000111112 346689999999999998764
No 43
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=46.50 E-value=1.3e+02 Score=24.63 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=14.7
Q ss_pred ceeeeeccCcEEEEEEEec
Q 013143 282 YHRIHSPVDWNVLVRRHFS 300 (449)
Q Consensus 282 YHR~HsPv~g~v~~~rh~~ 300 (449)
-..+.||.+|+|+.....+
T Consensus 13 g~~V~A~~~G~V~~~~~~~ 31 (96)
T PF01551_consen 13 GTPVYAPADGKVVFVGEDP 31 (96)
T ss_dssp T-EEEESSSEEEEEEEEET
T ss_pred CCEEEeCccEEEEEEEecc
Confidence 4479999999998877744
No 44
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=45.68 E-value=39 Score=31.16 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||-++..+- ....-+..+..-. =-++.++.|+.|..||.|.++
T Consensus 103 ~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~---------i~~i~v~~g~~V~~Gq~L~~i 154 (155)
T PRK06302 103 EVGDTVKEGQTLCIIEAMKVMNEIEADKSGV---------VTEILVENGQPVEFGQPLFVI 154 (155)
T ss_pred CCCCEeCCCCEEEEEEecccceEEecCCCeE---------EEEEEcCCCCEeCCCCEEEEe
Confidence 57999999999988876 3444443333211 145778999999999999875
No 45
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=44.36 E-value=38 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCceeecccEeeeeecCC-EEEEEeeC-CCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGS-TVVLVFQA-PTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGS-TVVLvFea-~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|+.+++||.+...+--- ...+.-+. +.+ -++.++.||.|..||.|+++
T Consensus 101 ~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V----------~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 101 REGQQVKVGQGLLILEAMKMENEIPAPKDGVV----------KKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCCEEcCCCEEEEEeecccceEEecCCCeEE----------EEEEcCCCCEECCCCEEEEe
Confidence 4689999999888765422 12222221 111 34668999999999999875
No 46
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=44.10 E-value=53 Score=25.47 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=35.1
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++..+-+-+. +-+.+|.. + -+++++.|+.|..|+.|.++
T Consensus 22 ~~G~~v~~g~~l~~ie~~k~~-~~i~ap~~---------G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 22 KVGDKVKKGDVLAEIEAMKAT-SDVEAPKS---------GTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCcCEECCCCEEEEEEeCCeE-EEEEcCCC---------EEEEEEEeCCCCEECCCCEEEEC
Confidence 468999999999998765332 22334421 2 34668899999999998763
No 47
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=44.09 E-value=20 Score=28.30 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.9
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
++|.++.|++|+.||.|+.+...
T Consensus 14 ~~~~v~~Gd~V~~g~~l~~ve~~ 36 (71)
T PRK05889 14 LEVVVNEGDQIGKGDTLVLLESM 36 (71)
T ss_pred EEEEeCCCCEECCCCEEEEEEec
Confidence 67899999999999999977543
No 48
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=43.78 E-value=50 Score=29.83 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|+.+++||.+-..+=- ....+..+.+-. =-++.++.||.|+.|+.|+++
T Consensus 78 ~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~---------V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 78 AVGDQVTENQPLLILEAMKMENEIVASSAGT---------VTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCCCEECCCCEEEEEeccCccEEEEcCCCeE---------EEEEEeCCCCEeCCCCEEEEe
Confidence 458899999988777643 223333332211 035779999999999999875
No 49
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=43.51 E-value=26 Score=34.73 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=25.6
Q ss_pred eeeeecCCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 391 VGAFNMGSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 391 ~G~F~lGSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.|.+.- .++.+.++.+.. .++.+++||+|+.||.|+++..
T Consensus 14 ~G~v~~-~~~~v~~~~~G~----------v~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 14 SGTVEP-NEVSVSAPVSGR----------VSVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEEEE-SEEEE--SS-EE----------EEE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEEE-EEEEEECCCCEE----------EEEEeCCcCEECCCCEEEEEEC
Confidence 455556 677777776643 5888999999999999998864
No 50
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=43.51 E-value=16 Score=32.72 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=14.9
Q ss_pred CCCCCCeeEecCCcEEEEEe
Q 013143 173 IDHDPHCLVSPVDGIVLRVG 192 (449)
Q Consensus 173 Id~d~~~lVSPaDGkVl~~G 192 (449)
|.+.++.++||+||+|...-
T Consensus 31 I~P~~~~v~AP~~G~v~~i~ 50 (124)
T cd00210 31 IKPSDGKVVAPVDGTIVQIF 50 (124)
T ss_pred EEccCCeEECcCCeEEEEEc
Confidence 33445789999999998653
No 51
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=42.18 E-value=22 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=18.9
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|.++.|+.|+.||.|+.+..
T Consensus 13 ~~~~v~~G~~V~~g~~l~~ve~ 34 (70)
T PRK08225 13 WKIVVKVGDTVEEGQDVVILES 34 (70)
T ss_pred EEEEeCCCCEECCCCEEEEEEc
Confidence 5678999999999999998653
No 52
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=42.15 E-value=3.2e+02 Score=30.86 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=37.0
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeC-CCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQA-PTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea-~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.+++||.+-..+- =.++.+--+. +.+ -++.++.|+.|.+|+.|+.+.
T Consensus 227 ~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l----------~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 227 KVGDKVEAEQSLITVEGDKASMEVPAPFAGTV----------KEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred cCCCeecCCCceEEEEecceeeEeeCCCCeEE----------EEEecCCCCEecCCCEEEEEe
Confidence 57999999999988876 2344333222 221 367899999999999999875
No 53
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=41.71 E-value=61 Score=36.31 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=36.9
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.++|||-++..+=. ....+.-+..-. =-++.+++|+.|..|+.|+.+.
T Consensus 539 ~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~---------V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 539 KEGDKVKAGDTVLVLEAMKMENEIQAPVDGT---------VKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCCEECCCCEEEEEeccccceEEEcCCCeE---------EEEEEeCCCCEeCCCCEEEEec
Confidence 569999999999998753 333333332211 0367899999999999999774
No 54
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=40.94 E-value=39 Score=36.75 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=37.4
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCC-CceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNS-NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~-~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.+++||.+...+= =.++. +++|.. + --++.++.|+.|.+||.|+.+.
T Consensus 114 ~~GD~V~~Gq~L~~VEtdK~~~e--I~Ap~~--------G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 114 KPGERVQADEAIAQIETDKVTID--IASPAS--------GVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred CCCCEecCCCEEEEEEecceeeE--EecCCC--------eEEEEEEeCCCCEecCCCEEEEec
Confidence 56999999999998875 23333 344421 0 1467899999999999999885
No 55
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=40.73 E-value=17 Score=29.03 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=20.3
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++|+.|+.||.|+.+...+
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~K 41 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETMK 41 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESSS
T ss_pred eEEEECCCCEEEcCceEEEEEcCc
Confidence 568899999999999999876444
No 56
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=40.48 E-value=26 Score=26.16 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.6
Q ss_pred eeeeeCCCEEEccceeeeecc
Q 013143 421 RFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 421 ~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
++.+++|+.|+.||.|+++..
T Consensus 12 ~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 12 KVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEeCCCCEECCCCEEEEEEc
Confidence 588999999999999998764
No 57
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=40.03 E-value=24 Score=33.00 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.4
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+-.++.||+|+.||.|.++.
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 3777899999999999999875
No 58
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=38.81 E-value=74 Score=23.10 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=34.1
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+.+|+.++..... ++..+-.+.... --+..++.|+.|..|+.|+++
T Consensus 23 ~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~---------v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 23 KEGDSVEEGDVLAEVETDKATVEVEAPAAGV---------LAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCCCEEcCCCEEEEEEeCCeEEEEECCCCEE---------EEEEeeCCcCEeCCCCEEEEC
Confidence 357889999999888764 444333333211 123668899999999998753
No 59
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=37.22 E-value=25 Score=31.80 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=17.8
Q ss_pred ceeeeeCCCEEEccceeeeec
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+...|++||+|+.||.|+.+.
T Consensus 82 ~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 82 YKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred EEEeeccCCEEcCCCEEEEEE
Confidence 556799999999999998664
No 60
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=36.11 E-value=30 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=14.9
Q ss_pred eeeCCCEEEccceeeeecc
Q 013143 423 CIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 423 ~v~~G~kVk~Gq~LG~~~~ 441 (449)
.|++||.|+.||.||....
T Consensus 56 ~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBS
T ss_pred cceecccccCCCEEEecCC
Confidence 4889999999999998764
No 61
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=35.77 E-value=92 Score=35.07 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=37.0
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|+.|++||.+-..+- -.++.+..+.+-. =-+..+++|+.|..|+.|..+.
T Consensus 542 ~~Gd~V~~Gq~L~~iEamKme~eV~AP~~Gv---------V~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 542 SAGDEVKAGQAVLVIEAMKMETEIKAPANGV---------VAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCCEeCCCCEEEEEEecceeeEEecCCCeE---------EEEEEeCCcCEECCCCEEEEEe
Confidence 56999999998877765 3444444433321 0356789999999999999875
No 62
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=35.63 E-value=3.9e+02 Score=25.32 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=16.1
Q ss_pred ceeee--eCCCEEEccceeeeec
Q 013143 420 FRFCI--KRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 420 ~~~~v--~~G~kVk~Gq~LG~~~ 440 (449)
....+ ++|+.|+.||.+|.+.
T Consensus 147 I~~~~~~~~g~~v~kG~e~G~f~ 169 (202)
T PF02666_consen 147 IVLTVDPKEGDEVKKGEELGYFR 169 (202)
T ss_pred eEEEecccCCCEEecCcEeCEEe
Confidence 45556 6799999999999754
No 63
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.00 E-value=1e+02 Score=34.65 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=35.3
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.+...+-.-. ..-..+|.. + -++.+++|+.|..|+.|+.+
T Consensus 541 ~~Gd~V~~Gd~l~~iEamKm-e~~I~Ap~~---------G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 541 TEGQTVAEGDVLLILEAMKM-ETEIRAAQA---------GTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred CCCCEeCCCCEEEEEecCce-eEEEEcCCC---------EEEEEEEeCCCCEECCCCEEEEe
Confidence 56899999999998765322 222334421 2 35778999999999999865
No 64
>PRK06748 hypothetical protein; Validated
Probab=31.67 E-value=40 Score=28.14 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=19.7
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.+|.+++|+.|+.||.|..+..
T Consensus 16 ~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 16 EKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEeCCCCEECCCCEEEEEEc
Confidence 6899999999999999998754
No 65
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=30.47 E-value=54 Score=34.27 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred CceeeeeCCCEEEccceeeeecc
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
-|...+++|+.|+.||.||++.+
T Consensus 299 l~~~~~~~Gd~V~~G~~lg~I~d 321 (359)
T cd06250 299 MVVYRAAPGDWVEAGDVLAEILD 321 (359)
T ss_pred EEEEecCCCCEecCCCEEEEEEC
Confidence 38889999999999999999864
No 66
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=30.11 E-value=36 Score=34.39 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.7
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
|+..+++|+.|+.||.||++.+.
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp 264 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDL 264 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECC
Confidence 88899999999999999998653
No 67
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=30.04 E-value=94 Score=33.45 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=38.3
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC-ceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN-FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~-~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|+.+++||.+...+--= +.+-.++|.. +- -++.++.|+.|..||.|+.+..
T Consensus 67 ~~Gd~V~~Gd~L~~vEtdK-~~~ei~Ap~~--------G~v~~i~v~~G~~V~~G~~L~~I~~ 120 (418)
T PTZ00144 67 KVGDYVKEDEVICIIETDK-VSVDIRAPAS--------GVITKIFAEEGDTVEVGAPLSEIDT 120 (418)
T ss_pred CCCCEeCCCCEEEEEEEcc-eEEEEecCCC--------eEEEEEEeCCCCEecCCCEEEEEcC
Confidence 5699999999999887521 3333455531 01 3577899999999999998853
No 68
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=29.00 E-value=92 Score=33.21 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=38.4
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|+.+++||.+...+- =+++.+--+..-. --++.++.|+.|++|+.|+.+..
T Consensus 23 ~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~---------v~~i~~~eG~~v~vG~~l~~i~~ 76 (403)
T TIGR01347 23 KVGDTVKRDENIVEIETDKVVLEVPSPADGV---------LQEILFKEGDTVESGQVLAILEE 76 (403)
T ss_pred CCcCEeCCCCEEEEEEEcceeeEEecCCCEE---------EEEEEeCCCCEeCCCCEEEEEec
Confidence 56999999999998875 3444443332211 03577899999999999998853
No 69
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=28.52 E-value=1e+02 Score=32.99 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|+.+++||.+-..+- -.++.+--+..-. --++.++.|+.|..|+.|+.+..
T Consensus 25 ~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~---------v~~i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 25 KPGDAVKRDEVLVEIETDKVVLEVPAPAAGV---------LSEILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred CCcCEeCCCCEEEEEEecCceeEEecCCCEE---------EEEEEeCCCCEeCCCCEEEEEec
Confidence 56999999999988876 4555543332211 03678999999999999998854
No 70
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=28.33 E-value=40 Score=30.05 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=19.8
Q ss_pred CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceee
Q 013143 397 GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLG 437 (449)
Q Consensus 397 GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG 437 (449)
|.+|+-..|++ -+..|+.||.|++||.|-
T Consensus 33 G~~v~~~IP~G------------peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 33 GETVVETIPAG------------PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SEEEEEEEESS------------S-BS--TT-EETTT-BSB
T ss_pred CCEEEEecCCC------------CeEEEcCCCEEecCCccc
Confidence 67888888875 577899999999999973
No 71
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.92 E-value=39 Score=34.31 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred CceeeeeCCCEEEccceeeeeccc
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
-|...+++|+.|+.||.||++.+.
T Consensus 239 l~~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 239 IFVPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred EEEECcCCCCEECCCCEEEEEeCC
Confidence 388889999999999999998764
No 72
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.91 E-value=54 Score=32.94 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
|...++.|+.|+.||.||.+.+
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i~d 255 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYVTD 255 (288)
T ss_pred EEEecCCCCEecCCCEEEEEEC
Confidence 7888999999999999999864
No 73
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=26.87 E-value=57 Score=33.69 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.0
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
|...+++|+.|+.||.||++.+.
T Consensus 266 ~~~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 266 IEFMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred EEEecCCCCEeCCCCEEEEEECC
Confidence 88889999999999999998763
No 74
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=26.41 E-value=59 Score=33.19 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
|...+++|+.|+.||.||++.+.
T Consensus 255 ~~~~~~~G~~V~~G~~lg~i~d~ 277 (316)
T cd06252 255 FEPLVDLGDEVSAGQVAGRIHFP 277 (316)
T ss_pred EEEecCCCCEEcCCCEEEEEECC
Confidence 88889999999999999998654
No 75
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=25.75 E-value=57 Score=25.31 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.1
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.+|.++.|+.|+.||.|+.+..
T Consensus 17 ~~~~v~~G~~v~~g~~l~~ie~ 38 (73)
T cd06663 17 VKWLKKVGDKVKKGDVLAEIEA 38 (73)
T ss_pred EEEEcCCcCEECCCCEEEEEEe
Confidence 3467889999999999998754
No 76
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=24.02 E-value=1.5e+02 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|..+++||.+...+=- ....+..+..-. --++.++.|+.|+.|+.|+.+..
T Consensus 22 ~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~---------V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 22 KPGDKVEAGQSLITLESDKASMEVPSSAAGI---------IKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred CCCCEEcCCCEEEEEEcccceeEEEcCCCEE---------EEEEEecCCCEEeccceEEEEec
Confidence 468999999999998652 333333332211 13577899999999999998753
No 77
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.87 E-value=54 Score=32.96 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred CceeeeeCCCEEEccceeeeecc
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
-|+..++.|++|+.||.||++.+
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d 251 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITD 251 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEEC
Confidence 37888999999999999999865
No 78
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=23.16 E-value=80 Score=34.23 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.6
Q ss_pred ceeeeeCCCEEEccceeeee
Q 013143 420 FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~ 439 (449)
.+..|++||+|+.||.|+.-
T Consensus 41 ~k~~Vk~GD~V~~Gq~I~~~ 60 (447)
T TIGR01936 41 PKMKVRPGDKVKAGQPLFED 60 (447)
T ss_pred CceEeCcCCEEcCCCEeEec
Confidence 46789999999999999964
No 79
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=22.49 E-value=1.6e+02 Score=33.10 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEcccee
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGL 436 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~L 436 (449)
..|..+++||.+-..+- -..+.+..+..-. =.++.++.|+.|..|+.|
T Consensus 534 ~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~---------V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 534 SEGQTVAEGEVLLILEAMKMETEIKAAAAGT---------VREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCCEECCCCEEEEEEeccceeEEecCCCeE---------EEEEEeCCCCEeCCCCCC
Confidence 57899999988877765 3444444443321 134778999999999865
No 80
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=22.41 E-value=2.1e+02 Score=29.07 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=39.9
Q ss_pred CCCceeecccEeeeeec--CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNM--GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l--GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..|+|||.+|...- +.+++-.+-+|.. +.-+.+...-.|..|+.|.++
T Consensus 245 ~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~d---------Giv~~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 245 HLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCD---------GILFTLREYPLVYEGSLVARI 297 (298)
T ss_pred CCCCEECCCCEEEEEeCCCCCCeeEEEEcCCC---------eEEEEeecCCeecCCceEEEe
Confidence 46899999999999854 6666666666653 677778888889999988765
No 81
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=22.27 E-value=70 Score=35.99 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.1
Q ss_pred CceeeeeCCCEEEccceeeeecc
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
+|+..|++||+|+.||.|.++..
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEecH
Confidence 69999999999999999998863
No 82
>PLN02964 phosphatidylserine decarboxylase
Probab=22.23 E-value=2.9e+02 Score=31.50 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=15.8
Q ss_pred ceeeeeCCCEEEccceeeeec
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..+.+++|++|+.||-+|.+.
T Consensus 565 I~~~~~~g~~v~KGdE~G~F~ 585 (644)
T PLN02964 565 ITFVKKEGDHVKKGDELGYFS 585 (644)
T ss_pred EEEEecCCCEEccCcEeeeee
Confidence 445567788999999988653
No 83
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=21.21 E-value=1.9e+02 Score=35.28 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=35.0
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|+.|++||.+...+=- .++.+ ++|.. + -+..+++|+.|+.||.|+.+
T Consensus 1149 ~~Gd~V~~Gd~l~~iEsmK~~~~v--~ap~~---------G~v~~i~~~~G~~V~~G~~l~~i 1200 (1201)
T TIGR02712 1149 EVGDRVEAGQPLVILEAMKMEMPV--SAPVA---------GKVTKILCQPGDMVDAGDIVAVL 1200 (1201)
T ss_pred CCCCEECCCCEEEEEEecCeeEEE--EcCCC---------EEEEEEEeCCCCEeCCCCEEEEe
Confidence 579999999999887642 23333 33321 2 35678999999999999865
No 84
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=20.50 E-value=82 Score=35.79 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=20.5
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+..|+.||+|+.||.|.++.
T Consensus 581 gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 581 GFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 5999999999999999999886
No 85
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=20.42 E-value=2.3e+02 Score=34.48 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=35.2
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|+.|+|||.+...+- =.+..+.-+..-. =-++.++.|+.|..|+.|+.+
T Consensus 1091 ~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~---------V~~i~v~~G~~V~~g~~l~~i 1142 (1143)
T TIGR01235 1091 SSGQAVNKGDPLVVLEAMKMETAIQAPKDGT---------IKEVLVKAGEQIDAKDLLLVL 1142 (1143)
T ss_pred CCCCEeCCCCEEEEEEecceeEEEecCCCEE---------EEEEEeCCCCEECCCCEEEEe
Confidence 46899999999888765 2333333332211 135678999999999999865
No 86
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=20.18 E-value=1.8e+02 Score=32.86 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=39.2
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.+-..+- =.++.+..+..-. --++.++.|+.|+.|+.|+.+.+.
T Consensus 23 ~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~---------v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 23 KVGDKVEAEQSLITVEGDKASMEVPSPQAGV---------VKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CCCCEECCCCEEEEEEeCCeeEEEeCCCCEE---------EEEEEeCCCCEEeCCCEEEEEecc
Confidence 46899999999887764 4555555444321 124678999999999999988654
Done!