Query 013143
Match_columns 449
No_of_seqs 251 out of 1418
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gpr_A Glucose-permease IIA co 97.9 1.4E-05 4.8E-10 72.4 6.6 107 274-439 37-153 (154)
2 1f3z_A EIIA-GLC, glucose-speci 97.7 7.4E-05 2.5E-09 68.1 6.9 44 274-341 42-85 (161)
3 1ax3_A Iiaglc, glucose permeas 97.6 0.00011 3.7E-09 67.1 6.8 108 274-439 42-160 (162)
4 1iyu_A E2P, dihydrolipoamide a 83.4 2.5 8.4E-05 32.6 6.1 55 380-445 21-78 (79)
5 1z6h_A Biotin/lipoyl attachmen 83.4 1.8 6.3E-05 32.4 5.3 54 380-442 16-70 (72)
6 1qjo_A Dihydrolipoamide acetyl 79.7 2.4 8.4E-05 32.6 4.9 54 380-442 23-77 (80)
7 1y8o_B Dihydrolipoyllysine-res 73.8 5.2 0.00018 34.6 5.7 57 380-445 50-108 (128)
8 1ghj_A E2, E2, the dihydrolipo 73.3 6.6 0.00023 30.1 5.7 53 380-441 24-77 (79)
9 3crk_C Dihydrolipoyllysine-res 72.8 6.6 0.00023 30.9 5.7 54 380-442 28-83 (87)
10 2dn8_A Acetyl-COA carboxylase 71.4 6.9 0.00024 31.7 5.7 54 380-443 34-88 (100)
11 1bdo_A Acetyl-COA carboxylase; 71.0 6.1 0.00021 30.3 5.0 49 380-439 28-79 (80)
12 2kcc_A Acetyl-COA carboxylase 67.1 9 0.00031 30.0 5.3 56 380-445 22-78 (84)
13 2dnc_A Pyruvate dehydrogenase 66.3 8.5 0.00029 31.3 5.2 57 380-445 30-88 (98)
14 2k7v_A Dihydrolipoyllysine-res 65.5 6.2 0.00021 30.9 4.1 53 380-441 19-72 (85)
15 2d5d_A Methylmalonyl-COA decar 65.4 9.3 0.00032 28.4 4.9 50 380-439 22-73 (74)
16 2ejm_A Methylcrotonoyl-COA car 63.4 11 0.00038 30.4 5.3 52 380-442 31-85 (99)
17 1gjx_A Pyruvate dehydrogenase; 63.1 7.2 0.00025 30.0 4.0 54 380-442 24-78 (81)
18 1k8m_A E2 component of branche 62.7 7.6 0.00026 31.2 4.2 52 380-442 27-81 (93)
19 2dne_A Dihydrolipoyllysine-res 62.2 5.7 0.0002 33.0 3.4 55 380-443 30-86 (108)
20 2l5t_A Lipoamide acyltransfera 60.2 7.5 0.00026 29.5 3.6 50 380-440 24-76 (77)
21 2gpr_A Glucose-permease IIA co 56.6 5.2 0.00018 35.7 2.3 22 419-440 90-111 (154)
22 1ax3_A Iiaglc, glucose permeas 51.8 6.4 0.00022 35.5 2.1 23 418-440 94-116 (162)
23 1z6h_A Biotin/lipoyl attachmen 50.9 7.6 0.00026 28.9 2.1 23 420-442 11-33 (72)
24 2d5d_A Methylmalonyl-COA decar 50.4 7.8 0.00027 28.8 2.1 22 420-441 17-38 (74)
25 1dcz_A Transcarboxylase 1.3S s 49.8 18 0.00061 27.2 4.2 50 380-439 25-76 (77)
26 1bdo_A Acetyl-COA carboxylase; 47.9 7.2 0.00025 29.9 1.6 24 420-443 23-46 (80)
27 1qjo_A Dihydrolipoamide acetyl 46.4 9.2 0.00032 29.2 2.0 24 420-443 18-41 (80)
28 3crk_C Dihydrolipoyllysine-res 46.2 9.8 0.00034 29.9 2.2 24 420-443 23-46 (87)
29 1ghj_A E2, E2, the dihydrolipo 45.6 8.7 0.0003 29.4 1.7 23 420-442 19-41 (79)
30 1iyu_A E2P, dihydrolipoamide a 45.5 7.8 0.00027 29.7 1.4 23 420-442 16-38 (79)
31 3our_B EIIA, phosphotransferas 44.4 10 0.00035 34.9 2.3 22 419-440 117-138 (183)
32 1k8m_A E2 component of branche 44.1 10 0.00035 30.4 2.0 24 420-443 22-45 (93)
33 1pmr_A Dihydrolipoyl succinylt 43.2 8 0.00027 29.8 1.2 53 380-441 25-78 (80)
34 2jku_A Propionyl-COA carboxyla 42.3 8.9 0.00031 30.7 1.4 51 380-439 42-93 (94)
35 2l5t_A Lipoamide acyltransfera 41.4 9.4 0.00032 29.0 1.3 23 420-442 19-41 (77)
36 1dcz_A Transcarboxylase 1.3S s 40.3 14 0.00047 27.8 2.1 21 421-441 21-41 (77)
37 2dnc_A Pyruvate dehydrogenase 40.2 13 0.00045 30.1 2.1 24 420-443 25-48 (98)
38 3it5_A Protease LASA; metallop 39.6 10 0.00036 34.5 1.5 19 423-441 86-104 (182)
39 3our_B EIIA, phosphotransferas 38.4 10 0.00036 34.9 1.3 18 174-191 68-85 (183)
40 1gjx_A Pyruvate dehydrogenase; 37.6 11 0.00037 28.9 1.2 24 420-443 19-42 (81)
41 2k32_A A; NMR {Campylobacter j 37.3 15 0.00053 30.0 2.1 22 421-442 14-35 (116)
42 2kcc_A Acetyl-COA carboxylase 36.5 14 0.00049 28.8 1.7 23 420-442 17-39 (84)
43 1pmr_A Dihydrolipoyl succinylt 36.4 8.1 0.00028 29.8 0.2 24 420-443 20-43 (80)
44 2ejm_A Methylcrotonoyl-COA car 36.0 15 0.00053 29.5 1.9 22 420-441 26-47 (99)
45 2dne_A Dihydrolipoyllysine-res 35.3 15 0.00053 30.3 1.8 24 420-443 25-48 (108)
46 2dn8_A Acetyl-COA carboxylase 33.6 16 0.00055 29.4 1.6 22 420-441 29-50 (100)
47 2k32_A A; NMR {Campylobacter j 33.0 46 0.0016 27.0 4.4 22 422-443 81-103 (116)
48 2jku_A Propionyl-COA carboxyla 32.0 14 0.00047 29.6 0.9 23 420-442 37-59 (94)
49 1qwy_A Peptidoglycan hydrolase 31.7 19 0.00066 35.4 2.1 21 422-442 239-259 (291)
50 1y8o_B Dihydrolipoyllysine-res 30.4 23 0.0008 30.4 2.2 24 420-443 45-68 (128)
51 3tuf_B Stage II sporulation pr 30.4 21 0.00071 34.1 2.0 21 422-442 135-155 (245)
52 2k7v_A Dihydrolipoyllysine-res 30.3 10 0.00035 29.6 -0.1 23 420-442 14-36 (85)
53 3hbl_A Pyruvate carboxylase; T 29.5 74 0.0025 36.8 6.7 53 380-441 1094-1147(1150)
54 3nyy_A Putative glycyl-glycine 28.1 24 0.00083 33.7 2.0 20 423-442 183-202 (252)
55 2hsi_A Putative peptidase M23; 27.6 24 0.00084 34.3 2.0 21 422-442 232-252 (282)
56 3csq_A Morphogenesis protein 1 27.4 22 0.00074 35.2 1.6 21 422-442 251-271 (334)
57 3va7_A KLLA0E08119P; carboxyla 27.2 80 0.0027 36.9 6.5 52 379-439 1183-1235(1236)
58 3tuf_B Stage II sporulation pr 25.9 3.1E+02 0.01 25.9 9.4 27 274-300 85-111 (245)
59 4ala_C Envelope protein, E gly 31.8 14 0.00049 30.8 0.0 52 283-342 37-88 (101)
60 3n6r_A Propionyl-COA carboxyla 25.4 1E+02 0.0036 33.3 6.7 52 379-439 628-680 (681)
61 2gu1_A Zinc peptidase; alpha/b 24.1 31 0.0011 34.4 2.1 21 422-442 284-304 (361)
62 2jqm_A Envelope protein E; yel 22.1 41 0.0014 28.6 2.1 35 300-342 60-94 (112)
63 3nyy_A Putative glycyl-glycine 21.5 2.8E+02 0.0097 26.2 8.2 25 275-299 130-156 (252)
64 1svb_A TICK-borne encephalitis 21.3 54 0.0018 33.5 3.1 69 268-352 323-392 (395)
No 1
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.92 E-value=1.4e-05 Score=72.42 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=68.5
Q ss_pred EEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeec
Q 013143 274 VIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIE 353 (449)
Q Consensus 274 vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d 353 (449)
.+.+.|.| |.++||++|+|.... | +|.++.++++.|.-.++-||- +...+
T Consensus 37 Giai~p~~-~~v~AP~~G~V~~v~--~---------------------t~HAigi~~~~G~evLiHiGi---dTv~l--- 86 (154)
T 2gpr_A 37 GFAINPKS-NDFHAPVSGKLVTAF--P---------------------TKHAFGIQTKSGVEILLHIGL---DTVSL--- 86 (154)
T ss_dssp EEEEEESS-SEEECSSCEEEEECC--T---------------------TCSEEEEECTTSCEEEEECSS---SGGGG---
T ss_pred eEEEEeCC-CcEECCCCeEEEEEc--c---------------------CCeEEEEEcCCCCEEEEEECc---chhhc---
Confidence 56788889 999999999997532 1 466777788788766667772 22211
Q ss_pred CccccCCccccccCCCCCCceecc-cCCCCceeecccEeeeeec------C-C--EEEEEeeCCCCCCCCCCCCCCceee
Q 013143 354 PELRTNQPRKKLLHSEPPEERVYE-PQGVGMMLKKGDEVGAFNM------G-S--TVVLVFQAPTIKSPNRGDNSNFRFC 423 (449)
Q Consensus 354 ~~l~TN~~~~~~~~~~~~~~~~y~-~~~~G~~l~KGeE~G~F~l------G-S--TVVLvFea~~~~~~d~~~~~~~~~~ 423 (449)
|.. .|+ ....|+.+++||.++.|.+ | | |.|++-. ... -...
T Consensus 87 -----~G~-------------gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~----------~~~~ 137 (154)
T 2gpr_A 87 -----DGN-------------GFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGG----------KTLE 137 (154)
T ss_dssp -----TTC-------------SEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSS----------CCCS
T ss_pred -----CCC-------------ceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCc----------ceEE
Confidence 100 011 1467999999999999984 4 2 4555555 432 1122
Q ss_pred eeCCCEEEccceeeee
Q 013143 424 IKRGDKIRVGEGLGRW 439 (449)
Q Consensus 424 v~~G~kVk~Gq~LG~~ 439 (449)
...+..|+.|+.|..+
T Consensus 138 ~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 138 IVKMGEVKQGDVVAIL 153 (154)
T ss_dssp CBCCEEECTTCEEEEE
T ss_pred EccCceEcCCCEEEEe
Confidence 3345678888887654
No 2
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.65 E-value=7.4e-05 Score=68.13 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.1
Q ss_pred EEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEec
Q 013143 274 VIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVG 341 (449)
Q Consensus 274 vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VG 341 (449)
.|.+.|.| |.++||++|+|.... ++|.++.++++.|.-.++-||
T Consensus 42 Giai~p~~-~~v~AP~~G~V~~v~-----------------------~t~hAigi~t~~G~evLiHiG 85 (161)
T 1f3z_A 42 GIAIKPTG-NKMVAPVDGTIGKIF-----------------------ETNHAFSIESDSGVELFVHFG 85 (161)
T ss_dssp EEEEEECS-SEEECSSSEEEEEEC-----------------------TTSSEEEEEETTSCEEEEECS
T ss_pred eEEEEeCC-CcEECCCCeEEEEEc-----------------------cCCeEEEEEeCCCCEEEEEEC
Confidence 57788899 899999999997653 256777778878866666776
No 3
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.57 E-value=0.00011 Score=67.12 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=67.3
Q ss_pred EEEECCCCceeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecCeeEEeec
Q 013143 274 VIYLKPGDYHRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIGSIELVIE 353 (449)
Q Consensus 274 vIYLsP~DYHR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVGsI~i~~d 353 (449)
.|.+.|.+ |.++||++|+|.... |+|.++.++++.|.-.++-||- +...+
T Consensus 42 Giai~p~~-~~v~AP~~G~V~~v~-----------------------~t~hAigi~t~~G~evLiHIGi---dTV~l--- 91 (162)
T 1ax3_A 42 GFAILPSE-GIVVSPVRGKILNVF-----------------------PTKHAIGLQSDGGREILIHFGI---DTVSL--- 91 (162)
T ss_dssp EEEEEECS-SEEEESCCEEEEECC-----------------------SSSSEEEEESSSSCEEEEECSS---STTTT---
T ss_pred eEEEEeCC-CcEECCCCeEEEEEc-----------------------cCCeEEEEEcCCCCEEEEEECc---cchhc---
Confidence 46677775 688999999996533 7788888888888766667772 21111
Q ss_pred CccccCCccccccCCCCCCceecc-cCCCCceeecccEeeeeec------C-C-EEEEEeeCCCCCCCCCCCCCCc-eee
Q 013143 354 PELRTNQPRKKLLHSEPPEERVYE-PQGVGMMLKKGDEVGAFNM------G-S-TVVLVFQAPTIKSPNRGDNSNF-RFC 423 (449)
Q Consensus 354 ~~l~TN~~~~~~~~~~~~~~~~y~-~~~~G~~l~KGeE~G~F~l------G-S-TVVLvFea~~~~~~d~~~~~~~-~~~ 423 (449)
|.. .|+ ....|+.+++||.++.|.+ | | ++.+++-... ++ ...
T Consensus 92 -----~G~-------------gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn~~----------~~~~~~ 143 (162)
T 1ax3_A 92 -----KGE-------------GFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLA----------EGETVS 143 (162)
T ss_dssp -----TTT-------------TEEESCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGG----------GTCEEE
T ss_pred -----CCC-------------ccEEEEeCCCEEcCCCEEEEECHHHHHhcCCCCEEEEEEECCc----------ccceEE
Confidence 100 011 1467999999999999984 4 3 3333443321 12 233
Q ss_pred eeCCCEEEccce-eeee
Q 013143 424 IKRGDKIRVGEG-LGRW 439 (449)
Q Consensus 424 v~~G~kVk~Gq~-LG~~ 439 (449)
...+..|+.|+. |..+
T Consensus 144 ~~~~~~v~~g~~~i~~~ 160 (162)
T 1ax3_A 144 IKASGSVNREQEDIVKI 160 (162)
T ss_dssp ECCCSEECTTCSSSEEE
T ss_pred eccCceEecCCEEEEEE
Confidence 444567889985 4443
No 4
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=83.43 E-value=2.5 Score=32.61 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeecccccc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQESCNE 445 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~~~~~~ 445 (449)
..|+.+++||.+....-- ....+ .+|.. + -+..++.|+.|..|+.|+++.+....
T Consensus 21 ~~Gd~V~~G~~l~~le~~k~~~~i--~Ap~~---------G~v~~~~v~~G~~V~~g~~l~~i~~~~~~ 78 (79)
T 1iyu_A 21 KTGDLIEVEQGLVVLESAKASMEV--PSPKA---------GVVKSVSVKLGDKLKEGDAIIELEPAAGA 78 (79)
T ss_dssp CTTCBCCSSSEEEEEECSSCEEEE--ECSSS---------SEEEEESCCTTCEEETTSEEEEEECCCSC
T ss_pred CCCCEEcCCCEEEEEEccceEEEE--ECCCC---------EEEEEEEeCCCCEECCCCEEEEEecCCCC
Confidence 468999999999988752 33333 34421 2 24668899999999999988755443
No 5
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=83.42 E-value=1.8 Score=32.41 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=38.1
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.++...-. ..+.+..+..-. =.+..++.|+.|..|+.|+++.+.
T Consensus 16 ~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~---------v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 16 KAGDQIEKGQEVAILESMKMEIPIVADRSGI---------VKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CTTCEECTTCEEEEEEETTEEEEEECSSCEE---------EEEESSCTTCEECTTCEEEEEGGG
T ss_pred CCcCEECCCCEEEEEECCccEEEEECCCCcE---------EEEEecCCCCEECCCCEEEEEeCC
Confidence 468999999999998764 344443333211 023568899999999999987643
No 6
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=79.74 E-value=2.4 Score=32.59 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=39.1
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.++...- -..+.+.-+..-. --+..++.|+.|..|+.|.++.+.
T Consensus 23 ~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~---------v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 23 KVGDKVAAEQSLITVEGDKASMEVPAPFAGV---------VKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CTTCEECBTSEEEEEESSSSCEEEEBSSCEE---------EEECCCCTTCEECTTCCCEEEESC
T ss_pred CCCCEECCCCEEEEEEcCCceEEEeCCCCEE---------EEEEecCCCCEECCCCEEEEEEcc
Confidence 46999999999999986 3445444443321 024568899999999999988654
No 7
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=73.80 E-value=5.2 Score=34.58 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCC-EEEccceeeeecccccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGD-KIRVGEGLGRWQESCNE 445 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~-kVk~Gq~LG~~~~~~~~ 445 (449)
..|+.+++||.+...+- -.++.+--+..-. --+..++.|+ .|..||.|+.+.+...+
T Consensus 50 ~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~---------V~~i~v~~Gd~~V~~G~~L~~i~~~~~~ 108 (128)
T 1y8o_B 50 KVGEKLSEGDLLAEIETDKATIGFEVQEEGY---------LAKILVPEGTRDVPLGTPLCIIVEKEAD 108 (128)
T ss_dssp CTTCEECTTCEEEEEECSSCEEEEECCSCEE---------EEEESSCTTCCSEETTCEEEEEESSGGG
T ss_pred CCCCEecCCCEEEEEEcCcceeEEeCCCCeE---------EEEEEeCCCCeeecCCCEEEEEecCccc
Confidence 46899999999998875 4444443333211 0246789998 89999999988754433
No 8
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=73.26 E-value=6.6 Score=30.10 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|..+++||.+...+- -....+--+..-. --+..++.|+.|..|+.|+++..
T Consensus 24 ~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~---------v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 24 KPGEAVKRDELIVDIETDKVVMEVLAEADGV---------IAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp CTTSEECSSCEEEEEECSSCEEEEECSSCEE---------EEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEECCCCEEEEEEccceeEEEEcCCCEE---------EEEEEcCCcCEECCCCEEEEEec
Confidence 56899999999999875 3333333332211 02366889999999999998764
No 9
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=72.78 E-value=6.6 Score=30.90 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=38.1
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCC-EEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGD-KIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~-kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.+...+- -.+..+--+..-. --+..++.|+ .|..|+.|+.+.+.
T Consensus 28 ~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~---------v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 28 KVGEKLSEGDLLAEIETDXATIGFEVQEEGY---------LAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp CTTCEECTTCEEEEEECSSCEEEEECCSCEE---------EEEESSCTTCCCEETTCEEEEEESS
T ss_pred CCCCEEcCCCEEEEEECCcccceeecCcCcE---------EEEEEECCCCeEECCCCEEEEEEcc
Confidence 56899999999998875 3444443333211 0236688999 89999999988654
No 10
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.38 E-value=6.9 Score=31.68 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=37.5
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecccc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
..|..+++||.+....-- .... ..+|.. .-....+++|+.|..|+.|+++.+..
T Consensus 34 ~~Gd~V~~Gq~L~~le~~k~~~~--i~Ap~~--------G~V~~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 34 EDGGHVEAGSSYAEMEVMKMIMT--LNVQER--------GRVKYIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp CTTEEECTTCEEEEEEETTEEEE--EECSSS--------EEEEECSCTTCEECSSCEEEEECCSC
T ss_pred CCcCEECCCCEEEEEEecceEEE--EEcCCC--------EEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 468999999999998742 2233 344431 01235678999999999999886443
No 11
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=71.03 E-value=6.1 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCCceeecccEeeeeecCC-EEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGS-TVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGS-TVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++...-.- .+.+ .+|.. + .+..++.|+.|..|+.|+++
T Consensus 28 ~~G~~V~~G~~l~~ie~~k~~~~i--~Ap~~---------G~v~~~~v~~G~~V~~G~~L~~i 79 (80)
T 1bdo_A 28 EVGQKVNVGDTLCIVEAMKMMNQI--EADKS---------GTVKAILVESGQPVEFDEPLVVI 79 (80)
T ss_dssp CTTCEECTTCEEEEEEETTEEEEE--ECSSC---------EEEEEECSCTTCEECTTCEEEEE
T ss_pred CCcCEECCCCEEEEEEeccEEEEE--ECCCC---------EEEEEEEcCCCCEECCCCEEEEE
Confidence 5699999999999987643 3333 34431 2 23557899999999999875
No 12
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=67.14 E-value=9 Score=30.00 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=38.5
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecccccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQESCNE 445 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~~~~ 445 (449)
..|..+++||.++...- -..+.+.-+..-. --... +.|+.|..|+.|+.+.+...|
T Consensus 22 ~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~---------v~~~~-~~G~~V~~G~~l~~i~~~~~~ 78 (84)
T 2kcc_A 22 EDGGHVEAGSSYAEMEVMKMIMTLNVQERGR---------VKYIK-RPGAVLEAGCVVARLELDDLE 78 (84)
T ss_dssp CTTEEECTTCEEEEEECSSCEEEEECSSSEE---------EEECS-CTTCCCCTTCCCEEEECSCSC
T ss_pred CCCCEECCCCEEEEEEecceeEEEECCCCEE---------EEEEc-CCCCEECCCCEEEEEeCCChh
Confidence 46899999999999875 3444444333211 01244 889999999999988765544
No 13
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.32 E-value=8.5 Score=31.30 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=39.1
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEE-Eccceeeeecccccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKI-RVGEGLGRWQESCNE 445 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kV-k~Gq~LG~~~~~~~~ 445 (449)
..|..+++||.+...+- -..+.+--+..-. --+..++.|+.| ..|+.|+++.....+
T Consensus 30 ~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~---------v~~i~v~~G~~Vv~~G~~l~~i~~~~~~ 88 (98)
T 2dnc_A 30 KEGEAVSAGDALCEIETDKAVVTLDASDDGI---------LAKIVVEEGSKNIRLGSLIGLIVEEGED 88 (98)
T ss_dssp CTTCEECTTSEEEEEECSSCEEEEECSSCEE---------EEECSSCTTCCCEESSCEEEEEECTTSC
T ss_pred CCCCEeCCCCEEEEEEcccceeEEeCCCCEE---------EEEEEeCCCCEEcCCCCEEEEEecCCCc
Confidence 56899999999998875 3444443333211 023568899998 999999988654433
No 14
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=65.50 E-value=6.2 Score=30.88 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=39.6
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|..+++||.+....- .....+.-+..-. --+..++.|+.|..|+.|..+.+
T Consensus 19 ~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~---------V~~~~v~~G~~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 19 KVGDKVAAEQSLITVEGDKASMEVPAPFAGV---------VKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp SSSCCCCCSSSCCCCSCCCSEEEEECSSCBC---------CCEECSCTTCCBCTTSEEEEEEC
T ss_pred CCCCEEcCCCEEEEEEccccEEEEECCCCEE---------EEEEEeCCCCEECCCCEEEEEEc
Confidence 46899999999999876 4555555444322 13567899999999999998864
No 15
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=65.43 E-value=9.3 Score=28.41 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=34.8
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.+..+.-.-. ..-..+|.. + .+..++.|+.|..|+.|.++
T Consensus 22 ~~G~~V~~G~~l~~i~~~~~-~~~i~ap~~---------G~v~~~~~~~G~~v~~g~~l~~i 73 (74)
T 2d5d_A 22 RVGDRVRVGQGLLVLEAMKM-ENEIPSPRD---------GVVKRILVKEGEAVDTGQPLIEL 73 (74)
T ss_dssp CTTCEECTTCEEEEEEETTE-EEEEECSSS---------EEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCCEeCCCCEEEEEecccc-eEEEeCCCC---------EEEEEEEcCCcCEECCCCEEEEE
Confidence 46899999999999986432 223334421 2 23457889999999999865
No 16
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=63.40 E-value=11 Score=30.41 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..++|||.+..+.-. -...+ .+|.. + .+..++.|+.|..|+.|.++.+.
T Consensus 31 ~~Gd~V~~Gq~L~~ie~~~~~~~i--~AP~~---------G~V~~~~v~~G~~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 31 KAGDKVKAGDSLMVMIAMKMEHTI--KSPKD---------GTVKKVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp CTTEEECSSCEEEEEESSSSEEEE--ECSSC---------EEEEEESCCTTEEECTTCBCEEECCC
T ss_pred CCCCEECCCCEEEEEEccceeEEE--ECCCC---------eEEEEEEcCCCCEECCCCEEEEEECC
Confidence 468999999999998763 23333 34421 1 23457899999999999988643
No 17
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=63.15 E-value=7.2 Score=29.97 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.++...- -....+.-+..-. =-+..++.|+.|..|+.|.++.+.
T Consensus 24 ~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~---------v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 24 NVGDTIAVDDTLITLETDKATMDVPAEVAGV---------VKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCBCCSSCCCEEEECSSCEEEECCCCSSB---------BCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCEECCCCEEEEEEeCCcEEEEECCCCEE---------EEEEecCCCCEeCCCCEEEEEEec
Confidence 46899999999998875 2333333322211 023568899999999999987643
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=62.70 E-value=7.6 Score=31.20 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=36.8
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeeccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|..+++||.++..+- -.+.. .++|.. + -+..++.|+.|..|+.|+.+...
T Consensus 27 ~~Gd~V~~G~~l~~ie~~K~~~~--i~Ap~~---------G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 27 KEGDTVSQFDSICEVQSDKASVT--ITSRYD---------GVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CTTCEECSSSCCEEEECSSCEEE--CCCSSC---------EEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCcCEECCCCEEEEEEcCCcEEE--EEcCCC---------EEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 56899999999998875 23322 334421 2 23668899999999999987643
No 19
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=62.18 E-value=5.7 Score=33.03 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCC-EEEccceeeeecccc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGD-KIRVGEGLGRWQESC 443 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~-kVk~Gq~LG~~~~~~ 443 (449)
..|..+++||.+...+- -.++.+--+..-. --+..++.|+ .|..|+.|+.+.+..
T Consensus 30 ~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~---------V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 30 KEGDKINEGDLIAEVETDKATVGFESLEECY---------MAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CTTCEECTTSEEEEEECSSCEEEEECSSSEE---------EEECSSCTTCCSEETTCEEEEEESCH
T ss_pred CCCCEecCCCEEEEEEcCcceeEEeCCCCEE---------EEEEEeCCCCeeecCCCEEEEEecCc
Confidence 56899999999998875 4444443333211 0235688999 899999999886543
No 20
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=60.16 E-value=7.5 Score=29.55 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeeec
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
..|..+++||.+....-- ... -..+|.. + -+..+++|+.|..|+.|.++.
T Consensus 24 ~~G~~V~~G~~l~~ie~~k~~~--~i~Ap~~---------G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 24 KEGDMVEKDQDLVEVMTDKVTV--KIPSPVR---------GKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp CTTCEECSCCCCCEEESSSCEE--ECCCCCC---------EEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCCEECCCCEEEEEEccceEE--EEECCCC---------EEEEEEEeCCcCEECCCCEEEEEE
Confidence 468999999999988752 222 2334421 2 236688999999999998763
No 21
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=56.57 E-value=5.2 Score=35.74 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=20.6
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+..|+.||+|+.||.|+++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 6999999999999999999886
No 22
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=51.82 E-value=6.4 Score=35.49 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCceeeeeCCCEEEccceeeeec
Q 013143 418 SNFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 418 ~~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
.+|+..|+.||+|+.||.|+++.
T Consensus 94 ~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 94 EGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TTEEESCCCCSEECSEEEEEEEC
T ss_pred CccEEEEeCCCEEcCCCEEEEEC
Confidence 37999999999999999999886
No 23
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=50.91 E-value=7.6 Score=28.87 Aligned_cols=23 Identities=22% Similarity=0.487 Sum_probs=19.3
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.++.||.|+.||.|+++...
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 46778999999999999988643
No 24
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=50.41 E-value=7.8 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=18.7
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.++.++.||+|+.||.|+++..
T Consensus 17 ~~~~v~~G~~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 17 LRVLVRVGDRVRVGQGLLVLEA 38 (74)
T ss_dssp EEECCCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEeCCCCEEEEEec
Confidence 3567889999999999998864
No 25
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=49.83 E-value=18 Score=27.17 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=34.7
Q ss_pred CCCceeecccEeeeeecCCEEEEEeeCCCCCCCCCCCCCC--ceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMGSTVVLVFQAPTIKSPNRGDNSN--FRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lGSTVVLvFea~~~~~~d~~~~~~--~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++.+.-.- ...-..+|.. + .+..++.|+.|..|+.|+++
T Consensus 25 ~~G~~V~~G~~L~~l~~~~-~~~~i~Ap~~---------G~v~~~~~~~G~~v~~G~~l~~i 76 (77)
T 1dcz_A 25 KEGDTVKAGQTVLVLEAMK-METEINAPTD---------GKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp CTTCEECTTSEEEEEEETT-EEEEEECSSS---------EEEEEECCCTTCBCCBTSEEEEE
T ss_pred CCcCEEcCCCEEEEEEccc-eeEEEECCCC---------EEEEEEecCCcCEECCCCEEEEE
Confidence 4689999999999887532 2233344431 2 23457889999999999875
No 26
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=47.89 E-value=7.2 Score=29.90 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.6
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
-+|.++.||.|+.||.|+.+...+
T Consensus 23 ~~~~v~~G~~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 23 AKAFIEVGQKVNVGDTLCIVEAMK 46 (80)
T ss_dssp SCCSCCTTCEECTTCEEEEEEETT
T ss_pred cccccCCcCEECCCCEEEEEEecc
Confidence 356789999999999999886533
No 27
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=46.43 E-value=9.2 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.8
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.++.+++||.|+.||.|+.+...+
T Consensus 18 ~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 18 TEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp EECCCCTTCEECBTSEEEEEESSS
T ss_pred EEEEcCCCCEECCCCEEEEEEcCC
Confidence 467789999999999999886433
No 28
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=46.21 E-value=9.8 Score=29.88 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.2
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||.|+.||.|+.+...+
T Consensus 23 ~~~~v~~Gd~V~~G~~l~~ie~~k 46 (87)
T 3crk_C 23 QRWEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp EEECSCTTCEECTTCEEEEEECSS
T ss_pred EEEEcCCCCEEcCCCEEEEEECCc
Confidence 678899999999999999876433
No 29
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=45.57 E-value=8.7 Score=29.39 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=19.3
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.+|.+++||.|+.||.|+.+...
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEcCCCCEECCCCEEEEEEcc
Confidence 45778999999999999987643
No 30
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=45.46 E-value=7.8 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.6
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.++.||+|+.||.|+.+...
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 56778999999999999988643
No 31
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=44.43 E-value=10 Score=34.94 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=19.8
Q ss_pred CceeeeeCCCEEEccceeeeec
Q 013143 419 NFRFCIKRGDKIRVGEGLGRWQ 440 (449)
Q Consensus 419 ~~~~~v~~G~kVk~Gq~LG~~~ 440 (449)
+|+..|+.||+|++||.|.++.
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred cceEEEeCcCEEcCCCEEEEEC
Confidence 4788899999999999999886
No 32
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=44.05 E-value=10 Score=30.44 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.3
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||.|+.||.|+.+...+
T Consensus 22 ~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 22 KEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp EEECCCTTCEECSSSCCEEEECSS
T ss_pred EEEEcCCcCEECCCCEEEEEEcCC
Confidence 678899999999999999886433
No 33
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=43.20 E-value=8 Score=29.81 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=33.8
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|..+++||.++..+-. .+.. ..+|.. +. --+..++.|+.|..|+.|+++.+
T Consensus 25 ~~Gd~V~~G~~l~~ie~~k~~~~--i~Ap~~----G~---v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 25 KPGDAVVRDEVLVEIETDKVVLE--VPASAD----GI---LDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CTTCCBSSSCCBCBCCSSSCCCC--CBCCSB----CC---CCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCcCEECCCCEEEEEEccceEEE--EECCCC----EE---EEEEEcCCcCEECCCCEEEEEec
Confidence 568999999999887531 1111 122211 00 02356789999999999987753
No 34
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=42.31 E-value=8.9 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=14.5
Q ss_pred CCCceeecccEeeeeecC-CEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 380 GVGMMLKKGDEVGAFNMG-STVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~lG-STVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
..|..+++||.++...-. .... ..+|.. +. -.+..+++|+.|..|+.|+++
T Consensus 42 ~~Gd~V~~Gq~L~~ie~~k~~~~--i~AP~~----G~---V~~~~v~~G~~V~~G~~L~~i 93 (94)
T 2jku_A 42 KPGDAVAEGQEICVIEAMKMQNS--MTAGKT----GT---VKSVHCQAGDTVGEGDLLVEL 93 (94)
T ss_dssp CTTCCCCTTCCCEEEEC--------------------------------------------
T ss_pred CCCCEEcCCCEEEEEecccccEE--EECCCC----EE---EEEEcCCCcCEECCCCEEEEE
Confidence 468999999999988752 2222 223321 00 023567899999999998764
No 35
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=41.42 E-value=9.4 Score=28.99 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.2
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.++.||+|+.||.|+.+...
T Consensus 19 ~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 19 VRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEeCCCCEECCCCEEEEEEcc
Confidence 45678999999999999988643
No 36
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=40.33 E-value=14 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.2
Q ss_pred eeeeeCCCEEEccceeeeecc
Q 013143 421 RFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 421 ~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
++.++.|+.|+.||.|+.+..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEA 41 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEE
T ss_pred EEEcCCcCEEcCCCEEEEEEc
Confidence 567889999999999998864
No 37
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.18 E-value=13 Score=30.14 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.4
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||+|+.||.|+.+...+
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 25 VKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp EEESSCTTCEECTTSEEEEEECSS
T ss_pred EEEEcCCCCEeCCCCEEEEEEccc
Confidence 678899999999999999876433
No 38
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=39.63 E-value=10 Score=34.50 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=16.8
Q ss_pred eeeCCCEEEccceeeeecc
Q 013143 423 CIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 423 ~v~~G~kVk~Gq~LG~~~~ 441 (449)
.|++||+|+.||.||.+..
T Consensus 86 ~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCCTTCEECTTCEEEEECS
T ss_pred ccCCCCEEcCCCEEEeecC
Confidence 4889999999999998864
No 39
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=38.36 E-value=10 Score=34.86 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=14.0
Q ss_pred CCCCCeeEecCCcEEEEE
Q 013143 174 DHDPHCLVSPVDGIVLRV 191 (449)
Q Consensus 174 d~d~~~lVSPaDGkVl~~ 191 (449)
.|.+..|+||+||+|...
T Consensus 68 ~P~~g~v~AP~dG~V~~v 85 (183)
T 3our_B 68 KPTGNKMVAPVNGTIGKI 85 (183)
T ss_dssp EECSSEEECSSSEEEEEE
T ss_pred EcCCCEEEeCCCeEEEEE
Confidence 345568999999999854
No 40
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=37.63 E-value=11 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.7
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.++.++.||.|+.||.|+.+...+
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 19 IAVEVNVGDTIAVDDTLITLETDK 42 (81)
T ss_dssp EEECCCSSCBCCSSCCCEEEECSS
T ss_pred EEEEcCCCCEECCCCEEEEEEeCC
Confidence 457789999999999999886443
No 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=37.34 E-value=15 Score=29.99 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.7
Q ss_pred eeeeeCCCEEEccceeeeeccc
Q 013143 421 RFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 421 ~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
++.+++||+|+.||.|+++.+.
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 4668899999999999998654
No 42
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=36.51 E-value=14 Score=28.78 Aligned_cols=23 Identities=9% Similarity=0.354 Sum_probs=19.5
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.++.|+.|+.||.|+.+...
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~ie~~ 39 (84)
T 2kcc_A 17 TQYTVEDGGHVEAGSSYAEMEVM 39 (84)
T ss_dssp EEESSCTTEEECTTCEEEEEECS
T ss_pred EEEECCCCCEECCCCEEEEEEec
Confidence 56788999999999999987643
No 43
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=36.37 E-value=8.1 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.1
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||.|+.||.|+.+...+
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~k 43 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETDK 43 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred EEEECCCcCEECCCCEEEEEEccc
Confidence 568899999999999999876433
No 44
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=36.00 E-value=15 Score=29.53 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.++.+++||+|+.||.|+++..
T Consensus 26 ~~~~v~~Gd~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 26 EKVFVKAGDKVKAGDSLMVMIA 47 (99)
T ss_dssp EEECCCTTEEECSSCEEEEEES
T ss_pred EEEECCCCCEECCCCEEEEEEc
Confidence 3566889999999999998864
No 45
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=35.34 E-value=15 Score=30.33 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.2
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||.|+.||.|+.+...+
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 25 ARWEKKEGDKINEGDLIAEVETDK 48 (108)
T ss_dssp EECSSCTTCEECTTSEEEEEECSS
T ss_pred EEEEcCCCCEecCCCEEEEEEcCc
Confidence 578899999999999999876443
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.63 E-value=16 Score=29.43 Aligned_cols=22 Identities=9% Similarity=0.391 Sum_probs=19.1
Q ss_pred ceeeeeCCCEEEccceeeeecc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
.++.+++||+|+.||.|+.+..
T Consensus 29 ~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 29 TQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp EEESSCTTEEECTTCEEEEEEE
T ss_pred EEEEcCCcCEECCCCEEEEEEe
Confidence 4677899999999999998764
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=32.97 E-value=46 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=17.8
Q ss_pred eeeeCCCEEEcc-ceeeeecccc
Q 013143 422 FCIKRGDKIRVG-EGLGRWQESC 443 (449)
Q Consensus 422 ~~v~~G~kVk~G-q~LG~~~~~~ 443 (449)
..+++|+.|..| +.|.++.+..
T Consensus 81 ~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 81 ALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp CSCCTTCEECTTTSCCEEEECSC
T ss_pred EECCCCCEEcCCCcEEEEEECCC
Confidence 457899999999 9999886543
No 48
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=31.98 E-value=14 Score=29.62 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=18.7
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.+++||.|+.||.|+.+...
T Consensus 37 ~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 37 VAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EEECCCTTCCCCTTCCCEEEEC-
T ss_pred EEEECCCCCEEcCCCEEEEEecc
Confidence 35678899999999999988643
No 49
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=31.67 E-value=19 Score=35.39 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=17.8
Q ss_pred eeeeCCCEEEccceeeeeccc
Q 013143 422 FCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 422 ~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
+.|++||+|+.||.||.+...
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 468999999999999987643
No 50
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=30.43 E-value=23 Score=30.40 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.3
Q ss_pred ceeeeeCCCEEEccceeeeecccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQESC 443 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~~ 443 (449)
.+|.+++||.|+.||.|+.+...+
T Consensus 45 ~~~~V~~Gd~V~~Gd~L~~iEa~K 68 (128)
T 1y8o_B 45 QRWEKKVGEKLSEGDLLAEIETDK 68 (128)
T ss_dssp EEECSCTTCEECTTCEEEEEECSS
T ss_pred EEEecCCCCEecCCCEEEEEEcCc
Confidence 678899999999999999876433
No 51
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=30.37 E-value=21 Score=34.13 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=17.7
Q ss_pred eeeeCCCEEEccceeeeeccc
Q 013143 422 FCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 422 ~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
+.|++||+|+.||.||.+...
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 348899999999999988654
No 52
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=30.28 E-value=10 Score=29.59 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.3
Q ss_pred ceeeeeCCCEEEccceeeeeccc
Q 013143 420 FRFCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 420 ~~~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.++.++.||+|+.||.|+.+...
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSCC
T ss_pred EEEEcCCCCEEcCCCEEEEEEcc
Confidence 46778999999999999987643
No 53
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=29.46 E-value=74 Score=36.80 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=37.7
Q ss_pred CCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeeecc
Q 013143 380 GVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRWQE 441 (449)
Q Consensus 380 ~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~~~ 441 (449)
..|+.|++||.+...+- =..+.+--+..-. =-++.++.|+.|..|+.|..+.+
T Consensus 1094 ~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~---------v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1094 SVGETVKANQPLLITEAMKMETTIQAPFDGV---------IKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp CTTCEECTTCEEEEEESSSCEEEEECSSSEE---------EEEECCCTTCEECTTBEEEEEC-
T ss_pred CCCCEECCCCEEEEEEeccceeEEecCCCeE---------EEEEEeCCCCEeCCCCEEEEEec
Confidence 57999999999988874 3444443333211 13577999999999999998764
No 54
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=28.06 E-value=24 Score=33.73 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=17.2
Q ss_pred eeeCCCEEEccceeeeeccc
Q 013143 423 CIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 423 ~v~~G~kVk~Gq~LG~~~~~ 442 (449)
.|++||+|+.||.||.+...
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~t 202 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGDS 202 (252)
T ss_dssp SCCTTCEECTTCEEEECBCC
T ss_pred cCCCCCEECCCCEEEEECCC
Confidence 47899999999999988643
No 55
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=27.56 E-value=24 Score=34.29 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.9
Q ss_pred eeeeCCCEEEccceeeeeccc
Q 013143 422 FCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 422 ~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
+.|++||+|+.||.||.+...
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCT
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 468999999999999987643
No 56
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=27.35 E-value=22 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.6
Q ss_pred eeeeCCCEEEccceeeeeccc
Q 013143 422 FCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 422 ~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
+.|++||+|+.||.||.+...
T Consensus 251 ~~V~~G~~V~~Gq~Ig~~G~t 271 (334)
T 3csq_A 251 LPFDVGKKLKKGDLMGHTGIG 271 (334)
T ss_dssp CCCCTTCEECTTSEEEECBCC
T ss_pred ccCCCcCEECCCCEEEeecCC
Confidence 348999999999999987643
No 57
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=27.23 E-value=80 Score=36.88 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=37.3
Q ss_pred CCCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 379 QGVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 379 ~~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
.+.|+.|++||.+...+- -.++.+--+..-. --++.+++|+.|..||.|..+
T Consensus 1183 v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~---------v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGK---------VYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp SCTTCEECSSCEEEEEEETTEEEEEECSSCEE---------EEEECCCTTCEECTTCEEEEE
T ss_pred cCCCCEECCCCEEEEEEecCcceeEecCCCeE---------EEEEEeCCcCEeCCCCEEEEe
Confidence 357999999999998874 4444443332211 146779999999999999865
No 58
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=25.90 E-value=3.1e+02 Score=25.93 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=19.8
Q ss_pred EEEECCCCceeeeeccCcEEEEEEEec
Q 013143 274 VIYLKPGDYHRIHSPVDWNVLVRRHFS 300 (449)
Q Consensus 274 vIYLsP~DYHR~HsPv~g~v~~~rh~~ 300 (449)
-|...++..-.++++.+|+|.......
T Consensus 85 Di~a~~Gt~~pV~A~~~G~V~~~g~~~ 111 (245)
T 3tuf_B 85 DLAEKDGKDFDVSASLSGTVVKAEKDP 111 (245)
T ss_dssp EEEETTCCCCEEECSSCEEEEEEEEET
T ss_pred EEeCCCCCcceEEeCcCeEEEEEEecC
Confidence 344556665689999999998877653
No 59
>4ala_C Envelope protein, E glycoprotein; immune system, antibody, neutralisation; HET: GOL; 1.84A {Dengue virus 3}
Probab=31.76 E-value=14 Score=30.80 Aligned_cols=52 Identities=21% Similarity=0.150 Sum_probs=37.4
Q ss_pred eeeeeccCcEEEEEEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecc
Q 013143 283 HRIHSPVDWNVLVRRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGA 342 (449)
Q Consensus 283 HR~HsPv~g~v~~~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGA 342 (449)
-.-+.|+.-.-....+.+|+|-++||.+. ..|+.+.++.+-.+|. ++|-||.
T Consensus 37 ~PCrIPi~~~~~~~~~~~grLIT~NP~v~-------~~~~~v~IE~epPfGd-SyI~vG~ 88 (101)
T 4ala_C 37 APCKIPFSTEDGQGKAHNGRLITANPVVT-------KKEEPVNIEAEPPFGE-SNIVIGI 88 (101)
Confidence 34566664332333566699999999753 4678888888889998 8888886
No 60
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=25.43 E-value=1e+02 Score=33.28 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=37.3
Q ss_pred CCCCceeecccEeeeeec-CCEEEEEeeCCCCCCCCCCCCCCceeeeeCCCEEEccceeeee
Q 013143 379 QGVGMMLKKGDEVGAFNM-GSTVVLVFQAPTIKSPNRGDNSNFRFCIKRGDKIRVGEGLGRW 439 (449)
Q Consensus 379 ~~~G~~l~KGeE~G~F~l-GSTVVLvFea~~~~~~d~~~~~~~~~~v~~G~kVk~Gq~LG~~ 439 (449)
...|+.|++||.+...+- --+..+--+..-. --++.+++|+.|..|+.|..+
T Consensus 628 v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~---------v~~i~~~~G~~v~~g~~l~~i 680 (681)
T 3n6r_A 628 VEVGQEVQEGQALCTIEAMKMENILRAEKKGV---------VAKINASAGNSLAVDDVIMEF 680 (681)
T ss_dssp CCTTCEECTTCEEEEEECSSCEEEEECSSSEE---------EEEECCCTTCEECTTCEEEEE
T ss_pred eCCCCEEcCCCEEEEEEecCceeEEECCCCeE---------EEEEEeCCcCEeCCCCEEEEE
Confidence 467999999999998773 4444444433321 135668999999999999875
No 61
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=24.14 E-value=31 Score=34.40 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.8
Q ss_pred eeeeCCCEEEccceeeeeccc
Q 013143 422 FCIKRGDKIRVGEGLGRWQES 442 (449)
Q Consensus 422 ~~v~~G~kVk~Gq~LG~~~~~ 442 (449)
..|++||+|+.||.||.+...
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCC
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 458999999999999987643
No 62
>2jqm_A Envelope protein E; yellow fever envelope protein domain III, asibi strain, structure, transferase; NMR {Yellow fever virus} PDB: 2jv6_A
Probab=22.10 E-value=41 Score=28.58 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.0
Q ss_pred cCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecc
Q 013143 300 SGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGA 342 (449)
Q Consensus 300 ~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGA 342 (449)
-|.|-++||.+ ...|+.+.++.+-.+|. +++.||.
T Consensus 60 vgrLIT~NP~~-------~~~~~~v~IE~epPfGd-SyI~vG~ 94 (112)
T 2jqm_A 60 KGILVTVNPIA-------STNDDEVLIEVNPPFGD-SYIIVGT 94 (112)
T ss_dssp CCEESSCCCBC-------SSTTCCCEEEEECCSEE-EEEEECS
T ss_pred eeEEEeCCCee-------ecCCCceEEEEeCCCCC-cEEEEcc
Confidence 48999999964 25688888999999999 8888886
No 63
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=21.49 E-value=2.8e+02 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=18.5
Q ss_pred EEECCCC--ceeeeeccCcEEEEEEEe
Q 013143 275 IYLKPGD--YHRIHSPVDWNVLVRRHF 299 (449)
Q Consensus 275 IYLsP~D--YHR~HsPv~g~v~~~rh~ 299 (449)
|.-..+. ++.++|+.+|+|......
T Consensus 130 i~a~~Gt~~~~pV~A~~~G~V~~~g~~ 156 (252)
T 3nyy_A 130 IMAEKNTPGYYPVVSMTDGVVTEKGWL 156 (252)
T ss_dssp EEESSCCTTCSEEECSSCEEEEEEEEE
T ss_pred EecCCCCCCCceEEeccCEEEEEEEec
Confidence 3445544 689999999999877554
No 64
>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET: NAG; 1.90A {Tick-borne encephalitis virus} SCOP: b.1.18.4 f.10.1.1 PDB: 1k4r_A 1na4_A 1n6g_A* 1urz_A 1z3r_A 2gg1_A 1z66_A
Probab=21.28 E-value=54 Score=33.53 Aligned_cols=69 Identities=13% Similarity=-0.017 Sum_probs=45.5
Q ss_pred CCeEEEEEEECCCCceeeeeccCcEEEE-EEEecCceecCChHHHhhcCCcccceeEEEEEEEecCeeEEEEEecceecC
Q 013143 268 KGLYYCVIYLKPGDYHRIHSPVDWNVLV-RRHFSGRLFPLNERATRTIRNLYFENERVVLEGMWQEGYLAMAAVGATNIG 346 (449)
Q Consensus 268 ~gg~~~vIYLsP~DYHR~HsPv~g~v~~-~rh~~G~L~sVnp~~~~~~~~LF~~NERvvl~g~~~~G~~a~v~VGAtnVG 346 (449)
.|...+.+-.+..| .-+-|+.-.-.. -..-.|.|-++||.+ ..|+.+.++.+-.+|. ++|-||
T Consensus 323 HgTVVmev~y~Gs~--PCrIpv~~~~~~~~~~~~g~lvT~NP~~--------~~~~~v~iE~epPfGd-SyI~vG----- 386 (395)
T 1svb_A 323 HDTVVMEVTFSGTK--PCRIPVRAVAHGSPDVNVAMLITPNPTI--------ENNGGGFIEMQLPPGD-NIIYVG----- 386 (395)
T ss_dssp SSCEEEEEEECSCS--SEECCEEEEETTBTTSCCCEESSSSCEE--------ETTEECEEEEECCSEE-EEEEET-----
T ss_pred CCeEEEEEEecCCC--CceeEEEEEecCCCCcceeEEeecCCce--------ecCCceEEEEeCCCCC-ceEEEE-----
Confidence 44433332233455 666676444322 123349999999964 4688999999999999 999888
Q ss_pred eeEEee
Q 013143 347 SIELVI 352 (449)
Q Consensus 347 sI~i~~ 352 (449)
+|+..|
T Consensus 387 ~l~~~W 392 (395)
T 1svb_A 387 ELSHQW 392 (395)
T ss_dssp TEEEEE
T ss_pred EEEEEe
Confidence 666655
Done!