Query 013144
Match_columns 449
No_of_seqs 408 out of 2281
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 05:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.6E-34 5.5E-39 279.5 32.4 296 96-423 23-349 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.8E-34 6.1E-39 280.2 27.9 291 93-390 22-320 (451)
3 2gfp_A EMRD, multidrug resista 100.0 3.5E-32 1.2E-36 257.6 15.0 263 102-390 3-265 (375)
4 4gc0_A D-xylose-proton symport 100.0 6.5E-29 2.2E-33 243.8 21.2 293 94-390 7-342 (491)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3E-27 1E-31 231.9 25.5 283 129-417 49-372 (491)
6 2cfq_A Lactose permease; trans 99.9 9.3E-25 3.2E-29 209.4 17.6 280 115-422 23-312 (417)
7 2xut_A Proton/peptide symporte 99.9 2.5E-22 8.6E-27 198.5 18.4 165 109-275 22-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 1.3E-15 4.3E-20 147.3 16.6 169 107-275 260-433 (451)
9 3o7q_A L-fucose-proton symport 99.6 1.2E-13 4.2E-18 132.8 18.0 148 117-269 276-426 (438)
10 2cfq_A Lactose permease; trans 99.6 5.2E-14 1.8E-18 134.6 15.1 146 133-280 258-404 (417)
11 4gc0_A D-xylose-proton symport 99.4 2.9E-11 1E-15 118.0 20.1 171 111-282 289-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 7E-13 2.4E-17 129.6 8.4 161 117-278 301-474 (491)
13 2gfp_A EMRD, multidrug resista 99.2 7.4E-12 2.5E-16 117.8 6.2 153 107-262 207-363 (375)
14 2xut_A Proton/peptide symporte 99.0 7.3E-10 2.5E-14 109.0 8.7 144 135-278 336-505 (524)
15 2jln_A MHP1; hydantoin, transp 64.2 88 0.003 29.7 12.6 54 217-270 19-74 (501)
16 2g9p_A Antimicrobial peptide l 54.0 3.4 0.00012 19.9 0.3 14 153-166 2-15 (26)
17 3iyz_A Aquaporin-4; water tran 28.0 3.2E+02 0.011 24.3 15.0 18 252-269 244-261 (340)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.6e-34 Score=279.45 Aligned_cols=296 Identities=15% Similarity=0.132 Sum_probs=249.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHH
Q 013144 96 ERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS 175 (449)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~ 175 (449)
+++..+..+++..+..+++.....+..|.+.+++|++..+.|++.+.+.++..++.+++|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 34566667777888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH-hh
Q 013144 176 LATFLT---PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM-SQ 251 (449)
Q Consensus 176 i~~~~~---~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~-~~ 251 (449)
++.+++ +++ ++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus 103 ~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 103 LGAALFWPAAEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHhcccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 888 999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred hC-------------------------chHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCCCCHHHHHHHHHhccCccccC
Q 013144 252 AG-------------------------IFGPFVIFGLSGFLWVLVWLSA-TSSTPDRHPQISKYELEYILREKQKPLLMG 305 (449)
Q Consensus 252 ~g-------------------------wr~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (449)
.+ ||+.|++.+++.++..++.++. .||.+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--------------------- 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--------------------- 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------------------
Confidence 44 9999988877766655554443 232222110
Q ss_pred CCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHH
Q 013144 306 NKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY-FNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLS 384 (449)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 384 (449)
++++++....++++++|+|.++...+..++..........++|.| +++.+|++..+++.......++.+++.++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 319 (438)
T 3o7q_A 240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLI 319 (438)
T ss_dssp CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223334577889999999999999898888889999999999 8888899999999999999999999999999999
Q ss_pred HHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccchh
Q 013144 385 DMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSPV 423 (449)
Q Consensus 385 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (449)
||+++| ..+..+.+..+++++.+...++.+
T Consensus 320 ~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T 3o7q_A 320 SRFAPH---------KVLAAYALIAMALCLISAFAGGHV 349 (438)
T ss_dssp HHSCHH---------HHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHhcch---------HHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999988 344455555556655555555444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.8e-34 Score=280.22 Aligned_cols=291 Identities=19% Similarity=0.217 Sum_probs=245.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHH
Q 013144 93 ITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVA 172 (449)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~ 172 (449)
.++.++..+..+++..+...++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 3455677888888899999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHH
Q 013144 173 LWSLATFLTPW----AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPIL 248 (449)
Q Consensus 173 ~~~i~~~~~~~----~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l 248 (449)
+.+++.+++++ + ++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHCHHHH--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhC-chHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCch-hHHHhhccccH
Q 013144 249 MSQAG-IFGPFVIFGLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIP-PFRRLLSKMPT 326 (449)
Q Consensus 249 ~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (449)
.+..| ||+.|++.+++.++..++.++..||+|++.+..+.++.+...+.. . ..+++++..... ..++.+++|.+
T Consensus 179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~ 254 (451)
T 1pw4_A 179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-Y---NEKAEQELTAKQIFMQYVLPNKLL 254 (451)
T ss_dssp HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------CCTHHHHHHTSSCHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-c---hhhhhcccccccchHHHHHcCHHH
Confidence 89898 999999999888877777777777766543221111100000000 0 000011111111 24678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHH--HHh
Q 013144 327 WSIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDML--IQR 390 (449)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~~ 390 (449)
+...+..++.....+.+..++|.|+++.+|+++.++++......++.+++.++.|++.||+ ++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 320 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999998899999999999999999999999999999999 776
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=3.5e-32 Score=257.62 Aligned_cols=263 Identities=14% Similarity=0.148 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHh
Q 013144 102 SMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLT 181 (449)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~ 181 (449)
.++++..+...++...+.+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHH
Q 013144 182 PWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIF 261 (449)
Q Consensus 182 ~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~ 261 (449)
+++ ++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..|||+.|++.
T Consensus 83 ~~~--~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 83 VTT--SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999999999999999999999999888999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHH
Q 013144 262 GLSGFLWVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFF 341 (449)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (449)
+++.++..+...+..||+++++++ +++...++++++|+|.++...+..++......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRPVDAP------------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIA 216 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCSTTTCC------------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCCCcc------------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 888777665445555555432211 01122345678889999999999999898999
Q ss_pred HHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 013144 342 VILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQR 390 (449)
Q Consensus 342 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 390 (449)
.+..+.|.|+++.+|+++.+++.......++.+++.++.+++.||.+++
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999999999999999998864
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=6.5e-29 Score=243.77 Aligned_cols=293 Identities=15% Similarity=0.127 Sum_probs=211.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhhcCC--------CchhhHHHHHHHHHHHHHhhccchhhhhhcCCch
Q 013144 94 TSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGW--------SRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKI 165 (449)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~ 165 (449)
+++.+.+..+.+++.++.++|...++.+++.+.++++. +..+.|++.+++.+|..++++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34556666777888899999999999999999887743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh------------------ccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHH
Q 013144 166 IMAWGVALWSLATFLTPW------------------AADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAV 227 (449)
Q Consensus 166 ~l~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~ 227 (449)
+++++.+++.++++++++ + +|+++++++|+++|+|.|...+....+++|+.|+++|++..
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a--~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA--GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGG--GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 999999999999999884 5 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHhh--------hCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhc
Q 013144 228 AIAMGGFTSGNAIGLVLSPILMSQ--------AGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-PQISKYELEYILREK 298 (449)
Q Consensus 228 ~~~~~~~~~G~~~g~~l~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 298 (449)
++.+.+..+|.++++.++..+... .+||+.+.+..+..++..+ ..+..||+|+.. .+.+.++..+..++.
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 999999999999999998887653 2467676666665555443 445567777532 111112111111100
Q ss_pred cCc-c-----cc-CCCCCCCCCchhHHHhhccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHH
Q 013144 299 QKP-L-----LM-GNKHKPATVIPPFRRLLSKMPTWSII-VANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPW 370 (449)
Q Consensus 299 ~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 370 (449)
... . .. .+...+..........++.++..... ...+.+..+.+.+..+.+.+.+. .+.+...........+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHH
Confidence 000 0 00 00000000001112233334443333 33344444556666677766666 5777777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013144 371 SVMAFTGYLGGLLSDMLIQR 390 (449)
Q Consensus 371 ~~~~~~~~~~g~l~dr~g~~ 390 (449)
+..+++.++.+++.||+|||
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr 342 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRK 342 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHHHHHHhhcCc
Confidence 88999999999999999998
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3e-27 Score=231.94 Aligned_cols=283 Identities=14% Similarity=0.145 Sum_probs=203.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHhhccchhhhhh-cCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhh
Q 013144 129 HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDY-YGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVAL 207 (449)
Q Consensus 129 ~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~ 207 (449)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++++++ ++++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 899999999999999999999999 999999999999999999999
Q ss_pred hHHHHHHhhccCcch--hhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCCCCC--
Q 013144 208 PAMNNMVARWFPQTE--RARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH-- 283 (449)
Q Consensus 208 ~~~~~~i~~~~~~~~--rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (449)
+...++++|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.|++.++..++..+..++..++..++.
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 7888999999999999999999999999999999999987776665555544433222111
Q ss_pred ---CCCCHHHHHHHHHhc----------------cCccccCCC-----------------CCCCCCchhHHHhhccccHH
Q 013144 284 ---PQISKYELEYILREK----------------QKPLLMGNK-----------------HKPATVIPPFRRLLSKMPTW 327 (449)
Q Consensus 284 ---~~~~~~~~~~~~~~~----------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 327 (449)
...++++.++..+.. .......+. ...+.......+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 111222222211110 000000000 00000000001111223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhH
Q 013144 328 SIIVANAMHSWGFFVILSWMPIYFNFVYHIDLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFI 407 (449)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 407 (449)
...+..++....+.....++|.|+++..+.+....+.......++.+++.++.+++.||++||+... ...+..+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence 5555566666666667788899999877888788899999999999999999999999999884321 122334444
Q ss_pred HHHHHHHHhh
Q 013144 408 APGIALIGLT 417 (449)
Q Consensus 408 ~~~~~~~~~~ 417 (449)
..+++++.+.
T Consensus 363 ~~~~~~~~~~ 372 (491)
T 4aps_A 363 FAGLSFLLMA 372 (491)
T ss_dssp HHHHHHTTTH
T ss_pred HHHHHHHHHH
Confidence 4455544443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=9.3e-25 Score=209.45 Aligned_cols=280 Identities=14% Similarity=0.075 Sum_probs=185.9
Q ss_pred Hhhhhhhhhh-hhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHH---HHhhhccchhHH
Q 013144 115 RVVMSVAIVP-LSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLAT---FLTPWAADTSLL 190 (449)
Q Consensus 115 ~~~~~~~~~~-l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~---~~~~~~~~~~~~ 190 (449)
.....+.+|. +++++|.++.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++. ..+.+. +...
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~ 100 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQ 100 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3344455555 566799999999999999999999999999999999999999999888776532 222232 2221
Q ss_pred -HHHHHHHHHhhhhhhhhhHHHHHHhhccCc--chhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 013144 191 -ALLAMRAVVGLAEGVALPAMNNMVARWFPQ--TERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFL 267 (449)
Q Consensus 191 -~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~ 267 (449)
.++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI 179 (417)
T ss_dssp TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence 244566666666665554444445555433 456777888888899999999999999987 5899999987666544
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccCccccCCCCCCCCCchhHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 013144 268 WVLVWLSATSSTPDRHPQISKYELEYILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWM 347 (449)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (449)
..+..++..||+++..+..+ ..+.++++....++++++|+|.++...+..+.....+..+..++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2cfq_A 180 LAVLLFFAKTDAPSSATVAN----------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp HHHHSCSSCCCCSCSSCSSS----------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccccccccc----------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 44333333333322110000 00001112223456678899998877776665555666666778
Q ss_pred HHHHHHhhCC---cccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhHHHHHHHHHhhcccch
Q 013144 348 PIYFNFVYHI---DLRQASWFSAVPWSVMAFTGYLGGLLSDMLIQRGTSVTLTRKILQSIGFIAPGIALIGLTAAKSP 422 (449)
Q Consensus 348 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (449)
|.|+.+.++. +....++......++.+++.++.++++||+||| .++..+.+..++..+.+...++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~ 312 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSA 312 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccH
Confidence 9888775442 234456777777788889999999999999988 33444555555555555544443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=2.5e-22 Score=198.53 Aligned_cols=165 Identities=18% Similarity=0.184 Sum_probs=143.0
Q ss_pred HHHHHhHhhhhhhh-hhhhhhcC------CCchhhHHHHHHHHHHHHHhhccchhhhhhc-CCchHHHHHHHHHHHHHHH
Q 013144 109 ALCNADRVVMSVAI-VPLSLAHG------WSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY-GGKIIMAWGVALWSLATFL 180 (449)
Q Consensus 109 ~~~~~~~~~~~~~~-~~l~~~~~------~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~ 180 (449)
+...+..+...+.+ +.+.+++| .+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+++.++
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333333333333 44677889 9999999999999999999999999999999 9999999999999999999
Q ss_pred hhhccch-hHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHH---HHHhhhhhhHhHHHHHHHHHhhhCchH
Q 013144 181 TPWAADT-SLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAI---AMGGFTSGNAIGLVLSPILMSQAGIFG 256 (449)
Q Consensus 181 ~~~~~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~~G~~~g~~l~~~l~~~~gwr~ 256 (449)
++++ + +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ...+.++|.++||.+++.+.+..|||+
T Consensus 102 ~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (524)
T 2xut_A 102 LAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAV 179 (524)
T ss_dssp HHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHH
T ss_pred HHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 9998 8 999999999999999999999999999999999999876666 899999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013144 257 PFVIFGLSGFLWVLVWLSA 275 (449)
Q Consensus 257 ~f~~~~~~~~~~~~~~~~~ 275 (449)
.|++.+++.++..+..++.
T Consensus 180 ~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 180 AFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888776655555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=1.3e-15 Score=147.30 Aligned_cols=169 Identities=11% Similarity=-0.034 Sum_probs=142.3
Q ss_pred HHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhc--CCchHHHHHHHHHH-HHHHHhh
Q 013144 107 ALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYY--GGKIIMAWGVALWS-LATFLTP 182 (449)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~--Grr~~l~~~~~~~~-i~~~~~~ 182 (449)
..++............|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+.++.++.. ++.++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3333444444555566666555 899999999999999999999999999999999 99999988887777 6777666
Q ss_pred hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhh-hhHhHHHHHHHHHhhhCchHHHHHH
Q 013144 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTS-GNAIGLVLSPILMSQAGIFGPFVIF 261 (449)
Q Consensus 183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~-G~~~g~~l~~~l~~~~gwr~~f~~~ 261 (449)
+.+..+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++......+ |..++|.+.+.+.+..||+..|++.
T Consensus 340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 419 (451)
T 1pw4_A 340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419 (451)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 653347888888889999999988999999999999999999999999999999 9999999999999999999999998
Q ss_pred HHHHHHHHHHHHHh
Q 013144 262 GLSGFLWVLVWLSA 275 (449)
Q Consensus 262 ~~~~~~~~~~~~~~ 275 (449)
+++.++..++.++.
T Consensus 420 ~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 420 IGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766655554
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.55 E-value=1.2e-13 Score=132.82 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=124.4
Q ss_pred hhhhhhhhh-h-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 013144 117 VMSVAIVPL-S-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLA 194 (449)
Q Consensus 117 ~~~~~~~~l-~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~ 194 (449)
......|.+ . +.+|.+..+.+++.+...++..++.++.|+++||+|||+++.++.++..++.++..+. ++.+.++.
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 353 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGLIA 353 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHHHH
Confidence 444444544 4 4459999999999999999999999999999999999999999999999999888887 77665554
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhC-chHHHHHHHHHHHHHH
Q 013144 195 MRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAG-IFGPFVIFGLSGFLWV 269 (449)
Q Consensus 195 ~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~g-wr~~f~~~~~~~~~~~ 269 (449)
. ++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++..
T Consensus 354 ~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 354 L-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp H-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4 8899999999999999999999855 888888877 566999999999999999999 9999988665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.55 E-value=5.2e-14 Score=134.59 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=125.5
Q ss_pred chhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhhhHHHH
Q 013144 133 RSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEGVALPAMNN 212 (449)
Q Consensus 133 ~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~ 212 (449)
....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++. ++.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888999999999999999999999999999888888777777 78888888888889888777778889
Q ss_pred HHhhccCcchhhHHHHH-HHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHhcCCCC
Q 013144 213 MVARWFPQTERARAVAI-AMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGLSGFLWVLVWLSATSSTP 280 (449)
Q Consensus 213 ~i~~~~~~~~rg~~~~~-~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~~ 280 (449)
++.|.+|++.|+.+.++ ++....+|..++|.++|.+.+..|+...|.+.++++++..++.++..++++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999 488888999999999999999888999999888887777666665555443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.37 E-value=2.9e-11 Score=118.02 Aligned_cols=171 Identities=19% Similarity=0.095 Sum_probs=128.0
Q ss_pred HHHhHhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHHHHHHHHHhhhcc---ch
Q 013144 111 CNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAA---DT 187 (449)
Q Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~~ 187 (449)
.......+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... .+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 289 QFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence 333344455556777788888888888888888899999999999999999999999999888888776654331 12
Q ss_pred hHHHHHHH-HHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHH------hhhCchHHHHH
Q 013144 188 SLLALLAM-RAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILM------SQAGIFGPFVI 260 (449)
Q Consensus 188 ~~~~l~~~-r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~------~~~gwr~~f~~ 260 (449)
+...++.. -+..+++. ...+....+.+|.+|.+.|+.++|+......+|..+++.+...+. ...++.+.|++
T Consensus 369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 22222222 22233332 345677899999999999999999999999999999888776653 24567888999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC
Q 013144 261 FGLSGFLWVLVWLSATSSTPDR 282 (449)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~ 282 (449)
.+.++++..++.+++.||++.+
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHheecCCCCC
Confidence 9999888888888888887653
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=7e-13 Score=129.56 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=125.5
Q ss_pred hhhhhhhhhh-hhcCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHH-----HHHHHHHHHHHHhhhcc-----
Q 013144 117 VMSVAIVPLS-LAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMA-----WGVALWSLATFLTPWAA----- 185 (449)
Q Consensus 117 ~~~~~~~~l~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~----- 185 (449)
......+... +.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.++..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444443 446766678889999999999999999999999999987655 77777777776665530
Q ss_pred --chhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHHH
Q 013144 186 --DTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFGL 263 (449)
Q Consensus 186 --~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~~ 263 (449)
..+.+.+++.-++.|++.+...+....++.|.+|+++|+.+.|+......+|..+++.+.+.+.+ .++.+.|++.++
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~ 459 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGL 459 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 12777888888999999999999999999999999999999999999999999999999888765 477888888887
Q ss_pred HHHHHHHHHHHhcCC
Q 013144 264 SGFLWVLVWLSATSS 278 (449)
Q Consensus 264 ~~~~~~~~~~~~~~~ 278 (449)
++++..++.++..++
T Consensus 460 ~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 460 GSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666665544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.22 E-value=7.4e-12 Score=117.77 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=117.4
Q ss_pred HHHHHHHhHhhhhhhhhhhhhh-cCCCchhhHHHHHHHHHHHHHhhccchhhhhhcCCchHHHHHHHH-HHHHHH--Hhh
Q 013144 107 ALALCNADRVVMSVAIVPLSLA-HGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVAL-WSLATF--LTP 182 (449)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~-~~i~~~--~~~ 182 (449)
..+.............|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|++ +..+..+ ..++.. ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~ 284 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPD 284 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 3334444444555566666555 899999999999999999999999999999999883 2333322 222222 122
Q ss_pred hccchhHHHHHHHHHHHhhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhhCchHHHHHHH
Q 013144 183 WAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQAGIFGPFVIFG 262 (449)
Q Consensus 183 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~gwr~~f~~~~ 262 (449)
....++.+.+++..++.|++.+...+...+++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+
T Consensus 285 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 285 WFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 2111477778888899999999999999999999998 899999999999999999999999999988878887777643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.99 E-value=7.3e-10 Score=109.05 Aligned_cols=144 Identities=14% Similarity=0.036 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHhhccchhhh----hhcCCc----hHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHHH
Q 013144 135 FSGIVQSSFLWGYLVSPIAGGTLV----DYYGGK----IIMAWGVALWSLATFLTPWAA-------DTSLLALLAMRAVV 199 (449)
Q Consensus 135 ~~g~~~s~~~~~~~~~~~~~G~l~----dr~Grr----~~l~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~ 199 (449)
..+++.+...++..++.++.+++. ||.|+| +.+.++.++.+++.++.++.. ..+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 466777777777778888887775 555543 567778888888877776641 13677788889999
Q ss_pred hhhhhhhhhHHHHHHhhccCcchhhHHHHHHHHhhhhhhHhHHHHHHHHHhhh--Cc---------hHHHHHHHHHHHHH
Q 013144 200 GLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNAIGLVLSPILMSQA--GI---------FGPFVIFGLSGFLW 268 (449)
Q Consensus 200 G~g~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~~~--gw---------r~~f~~~~~~~~~~ 268 (449)
|++.+...+...+++.|.+|+++||+++|+......+|..+||.+.+.+.+.. +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887632 23 33366666666666
Q ss_pred HHHHHHhcCC
Q 013144 269 VLVWLSATSS 278 (449)
Q Consensus 269 ~~~~~~~~~~ 278 (449)
.++.++..++
T Consensus 496 ~~~~~~~~~~ 505 (524)
T 2xut_A 496 AIVFALYARS 505 (524)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 15
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=64.22 E-value=88 Score=29.74 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=29.5
Q ss_pred ccCcchh-hHHHHHHHHhhhhhhHhHHH-HHHHHHhhhCchHHHHHHHHHHHHHHH
Q 013144 217 WFPQTER-ARAVAIAMGGFTSGNAIGLV-LSPILMSQAGIFGPFVIFGLSGFLWVL 270 (449)
Q Consensus 217 ~~~~~~r-g~~~~~~~~~~~~G~~~g~~-l~~~l~~~~gwr~~f~~~~~~~~~~~~ 270 (449)
-.|+++| .....+.....+....++.. +++.+....+|+..++...+-.++..+
T Consensus 19 pvp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~ 74 (501)
T 2jln_A 19 PTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVI 74 (501)
T ss_dssp CCCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Confidence 3566666 55666665555555555555 344444445677776655444444333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.98 E-value=3.4 Score=19.91 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.3
Q ss_pred cchhhhhhcCCchH
Q 013144 153 AGGTLVDYYGGKII 166 (449)
Q Consensus 153 ~~G~l~dr~Grr~~ 166 (449)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35889999999864
No 17
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=27.98 E-value=3.2e+02 Score=24.27 Aligned_cols=18 Identities=6% Similarity=-0.156 Sum_probs=10.8
Q ss_pred hCchHHHHHHHHHHHHHH
Q 013144 252 AGIFGPFVIFGLSGFLWV 269 (449)
Q Consensus 252 ~gwr~~f~~~~~~~~~~~ 269 (449)
+++.|+||+.-+++.++.
T Consensus 244 w~~~WVywvgPiiGaila 261 (340)
T 3iyz_A 244 WENHWIYWVGPIIGAVLA 261 (340)
T ss_pred CCcEeehhHHHHHHHHHH
Confidence 455678887665554433
Done!