BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013145
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 17/224 (7%)
Query: 54 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 109
+LAA + +F L S ES V +R +SE + ++ +MY+ + + +
Sbjct: 71 VLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTG-S 129
Query: 110 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 169
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 130 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHMYTLSQLALKAADMIRRN 188
Query: 170 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 229
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 189 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 239
Query: 230 VLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEAL 271
L + +R M L + + +++V KLV +A+
Sbjct: 240 RYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAV 283
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 24 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRIN 83
DE E+S DC V + ILAA+SP F +F + M+ES++ V IN
Sbjct: 162 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EIN 219
Query: 84 ASEEAALMELLNFMYSNTLSTTAAPAL----LDVLMAADKFEVASCMRYC-SRLLRNMPM 138
E E++ F+Y T AP L D+L AADK+ + C L N+ +
Sbjct: 220 DVEPEVFKEMMCFIY-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSV 274
Query: 139 TPESALLYL 147
+ +L L
Sbjct: 275 ENAAEILIL 283
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 24 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRIN 83
DE E+S DC V + ILAA+SP F +F + M+ES++ V IN
Sbjct: 13 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV--EIN 70
Query: 84 ASEEAALMELLNFMYSNTLSTTAAPAL----LDVLMAADKFEVASCMRYC-SRLLRNMPM 138
E E++ F+Y T AP L D+L AADK+ + C L N+ +
Sbjct: 71 DVEPEVFKEMMCFIY-----TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSV 125
Query: 139 TPESALLYL 147
+ +L L
Sbjct: 126 ENAAEILIL 134
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 54 ILAAKSPFFYKLFSNGMKESEQRHVALRINASEEA----ALMELLNFMYSNTLSTTAAPA 109
+LAA + +F L S ES V R +SE + ++ + Y+ + + +
Sbjct: 53 VLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTG-S 111
Query: 110 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 169
+ +VL AD+F + +C L+ ++ L + + D R+
Sbjct: 112 VHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHXYTLSQLALKAADXIRRN 170
Query: 170 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 229
+D +E LP + LS ++ + SE+ +++ VLKW + R E RE
Sbjct: 171 FHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ----RNAEERE 221
Query: 230 VLGSRLARFIRF----PHMTCRKLK-KVLTCNDFDHDVASKLVLEAL 271
L + +R P R +K + L N+ +V KLV +A+
Sbjct: 222 RYFEELFKLLRLSQXKPTYLTRHVKPERLVANN---EVCVKLVADAV 265
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 39 CSTVVRVKTLHISS--PILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 96
C V+ V+ + +LAA S +F KLF++G +Q + ++E AL L++F
Sbjct: 36 CDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDF 93
Query: 97 MYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLL 133
Y+ TL+ + A + D+L AA E+ + C+ LL
Sbjct: 94 AYTATLTVSTA-NVGDILSAARLLEIPAVSHVCADLL 129
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 39 CSTVVRVKTLHISS--PILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNF 96
C V+ V+ + +LAA S +F KLF++G +Q + ++E AL L++F
Sbjct: 26 CDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAE--ALTALMDF 83
Query: 97 MYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLL 133
Y+ TL+ + A + D+L AA E+ + C+ LL
Sbjct: 84 AYTATLTVSTA-NVGDILSAARLLEIPAVSHVCADLL 119
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 25 DEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINA 84
DE E+S DC V + ILAA+SP F F + +ES++ V IN
Sbjct: 23 DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV--EIND 80
Query: 85 SEEAALMELLNFMYS 99
E E F+Y+
Sbjct: 81 VEPEVFKEXXCFIYT 95
>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or94
Length = 248
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 186 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 245
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P +T
Sbjct: 105 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMLT 162
Query: 246 CRKLKKVL 253
+ L++++
Sbjct: 163 LKALQELI 170
>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est30
Length = 247
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 186 ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 245
+P+ G+ + + + I SE+ +Y+ VL++AR R + E + + +F + P T
Sbjct: 106 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKT 163
Query: 246 CRKLKKVL 253
+ L++++
Sbjct: 164 LKALQELI 171
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 38 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 97
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 87
Query: 98 YSNTLSTTAAPALLDVLMAADKF 120
YS+ + + LLD L+ + +
Sbjct: 88 YSSKIVRVRSD-LLDELIKSGQL 109
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 38 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFM 97
D + +V + IL+A S +F++LFS + E + I A E+LN++
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFA-------EILNYI 85
Query: 98 YSNTLSTTAAPALLDVLMAADKF 120
YS+ + + LLD L+ + +
Sbjct: 86 YSSKIVRVRSD-LLDELIKSGQL 107
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 38 DCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINAS-EEAALMELLNF 96
D S VV+ +LAA S +F LF+N R + + A+ + + ++L+F
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS------RSAVVELPAAVQPQSFQQILSF 88
Query: 97 MYSNTLSTTAAPALLDVLMAADKF 120
Y+ LS D+LM F
Sbjct: 89 CYTGRLSMNVGDQ--DLLMYTAGF 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,259,341
Number of Sequences: 62578
Number of extensions: 464745
Number of successful extensions: 955
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 13
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)