Query 013145
Match_columns 449
No_of_seqs 345 out of 2799
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 00:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.7E-71 1.2E-75 566.3 33.6 379 36-439 34-485 (571)
2 PHA02713 hypothetical protein; 100.0 6.9E-63 1.5E-67 508.8 31.6 388 24-439 13-522 (557)
3 PHA02790 Kelch-like protein; P 100.0 9.3E-60 2E-64 479.1 32.8 362 35-439 19-456 (480)
4 PHA03098 kelch-like protein; P 100.0 1.4E-56 3.1E-61 465.0 32.3 378 36-439 7-497 (534)
5 KOG4350 Uncharacterized conser 100.0 5.9E-33 1.3E-37 257.0 12.6 234 23-275 31-266 (620)
6 KOG2075 Topoisomerase TOP1-int 99.9 4.8E-26 1E-30 216.4 12.6 225 24-259 102-340 (521)
7 KOG4441 Proteins containing BT 99.9 1.4E-21 3E-26 201.5 16.2 131 300-439 335-532 (571)
8 PHA02713 hypothetical protein; 99.8 1.7E-18 3.6E-23 179.3 21.8 117 317-439 272-473 (557)
9 KOG4682 Uncharacterized conser 99.8 4.6E-19 9.9E-24 165.2 12.8 183 27-219 60-247 (488)
10 PF07707 BACK: BTB And C-termi 99.8 3.3E-19 7.2E-24 143.3 4.4 103 143-254 1-103 (103)
11 KOG4591 Uncharacterized conser 99.8 1.9E-18 4.2E-23 146.3 7.6 163 28-202 58-224 (280)
12 PF00651 BTB: BTB/POZ domain; 99.7 3E-18 6.5E-23 139.6 7.8 106 27-135 1-109 (111)
13 smart00875 BACK BTB And C-term 99.7 2.8E-16 6.1E-21 125.5 9.6 99 143-251 1-99 (101)
14 smart00225 BTB Broad-Complex, 99.6 9.4E-16 2E-20 119.2 7.1 88 40-130 1-90 (90)
15 PHA03098 kelch-like protein; P 99.6 2.5E-14 5.4E-19 148.9 17.7 261 137-439 72-447 (534)
16 KOG0783 Uncharacterized conser 99.5 9E-15 1.9E-19 147.3 6.8 137 36-179 710-852 (1267)
17 PHA02790 Kelch-like protein; P 99.4 3.6E-13 7.9E-18 137.6 10.2 107 317-425 331-476 (480)
18 TIGR03548 mutarot_permut cycli 99.4 3.1E-12 6.7E-17 124.5 10.8 118 316-438 87-312 (323)
19 TIGR03547 muta_rot_YjhT mutatr 99.3 1.6E-11 3.5E-16 120.7 11.6 105 316-438 28-209 (346)
20 TIGR03548 mutarot_permut cycli 99.3 2.7E-11 6E-16 117.9 10.9 116 318-439 40-233 (323)
21 PLN02153 epithiospecifier prot 99.2 9E-11 1.9E-15 115.1 11.9 120 316-440 100-325 (341)
22 PLN02153 epithiospecifier prot 99.2 8.2E-11 1.8E-15 115.4 10.9 118 316-439 49-261 (341)
23 TIGR03547 muta_rot_YjhT mutatr 99.2 4.9E-11 1.1E-15 117.3 9.1 101 317-440 168-332 (346)
24 PLN02193 nitrile-specifier pro 99.2 1.3E-10 2.7E-15 118.7 11.2 118 316-439 192-387 (470)
25 PRK14131 N-acetylneuraminic ac 99.1 4.1E-10 9E-15 111.8 12.4 41 316-356 49-94 (376)
26 PRK14131 N-acetylneuraminic ac 99.1 2.2E-10 4.8E-15 113.8 8.9 103 316-439 188-353 (376)
27 PLN02193 nitrile-specifier pro 99.0 1.7E-09 3.7E-14 110.4 11.8 105 316-426 243-417 (470)
28 KOG4693 Uncharacterized conser 98.8 5.3E-09 1.1E-13 93.7 6.7 118 316-438 104-311 (392)
29 PF13964 Kelch_6: Kelch motif 98.6 4E-08 8.6E-13 67.3 4.0 47 336-405 1-50 (50)
30 KOG0511 Ankyrin repeat protein 98.5 1.8E-07 3.9E-12 87.7 5.4 135 46-187 301-442 (516)
31 PF01344 Kelch_1: Kelch motif; 98.4 1.7E-07 3.7E-12 63.1 3.2 44 336-402 1-47 (47)
32 KOG4693 Uncharacterized conser 98.4 2E-06 4.4E-11 77.4 8.8 39 319-357 46-99 (392)
33 KOG0783 Uncharacterized conser 98.3 1.9E-06 4.2E-11 88.3 7.5 107 25-131 543-683 (1267)
34 KOG2838 Uncharacterized conser 98.0 2.7E-06 5.8E-11 76.6 2.7 99 24-122 118-218 (401)
35 KOG2838 Uncharacterized conser 97.9 5.4E-06 1.2E-10 74.6 1.8 99 47-147 262-397 (401)
36 KOG0379 Kelch repeat-containin 97.8 9.1E-05 2E-09 75.9 10.1 100 316-438 138-284 (482)
37 KOG1230 Protein containing rep 97.7 6.1E-05 1.3E-09 72.1 6.5 104 318-440 99-253 (521)
38 KOG2716 Polymerase delta-inter 97.6 0.00018 3.9E-09 64.8 7.8 87 46-135 14-103 (230)
39 PF07646 Kelch_2: Kelch motif; 97.6 6.5E-05 1.4E-09 50.9 3.6 45 336-402 1-49 (49)
40 KOG0379 Kelch repeat-containin 97.6 0.00048 1E-08 70.6 10.5 101 318-439 89-234 (482)
41 KOG1987 Speckle-type POZ prote 97.5 6.5E-05 1.4E-09 72.2 3.7 125 46-178 110-239 (297)
42 KOG1230 Protein containing rep 97.4 0.00071 1.5E-08 65.0 8.6 100 319-438 156-316 (521)
43 PF11822 DUF3342: Domain of un 97.4 8.5E-05 1.9E-09 69.7 2.4 88 46-135 14-102 (317)
44 PF02214 BTB_2: BTB/POZ domain 97.3 0.00017 3.8E-09 56.3 2.9 86 41-129 1-94 (94)
45 KOG4152 Host cell transcriptio 97.3 0.00075 1.6E-08 66.4 7.2 36 322-357 113-157 (830)
46 PF13418 Kelch_4: Galactose ox 97.2 0.00027 5.8E-09 47.8 2.2 44 336-402 1-48 (49)
47 KOG3473 RNA polymerase II tran 97.1 0.00086 1.9E-08 50.7 4.8 72 47-122 28-112 (112)
48 smart00612 Kelch Kelch domain. 96.9 0.0011 2.4E-08 44.0 3.4 17 389-405 18-37 (47)
49 COG3055 Uncharacterized protei 96.8 0.0042 9.1E-08 58.9 7.3 42 316-357 112-157 (381)
50 smart00612 Kelch Kelch domain. 96.5 0.0045 9.7E-08 40.9 4.0 32 316-347 14-47 (47)
51 smart00512 Skp1 Found in Skp1 96.1 0.0093 2E-07 47.5 4.5 73 46-122 12-104 (104)
52 PF13854 Kelch_5: Kelch motif 95.7 0.018 3.9E-07 37.4 3.8 24 334-357 2-25 (42)
53 KOG1724 SCF ubiquitin ligase, 95.5 0.022 4.7E-07 48.8 4.6 98 47-148 16-140 (162)
54 KOG1665 AFH1-interacting prote 95.2 0.044 9.5E-07 48.5 5.6 84 45-131 17-105 (302)
55 COG3055 Uncharacterized protei 94.8 0.085 1.8E-06 50.3 6.7 91 316-439 57-156 (381)
56 PF13415 Kelch_3: Galactose ox 94.3 0.036 7.8E-07 37.2 2.4 38 346-405 1-41 (49)
57 KOG2714 SETA binding protein S 94.3 0.12 2.6E-06 50.4 6.6 83 41-127 13-102 (465)
58 PF03931 Skp1_POZ: Skp1 family 93.4 0.23 5E-06 35.2 5.3 49 46-99 11-59 (62)
59 PF13415 Kelch_3: Galactose ox 93.3 0.14 3E-06 34.4 3.8 45 299-345 3-49 (49)
60 KOG0511 Ankyrin repeat protein 93.3 0.019 4.2E-07 54.7 -0.6 104 19-127 129-236 (516)
61 PF13964 Kelch_6: Kelch motif 92.0 0.21 4.5E-06 33.6 3.3 34 298-334 12-45 (50)
62 KOG4350 Uncharacterized conser 91.5 0.52 1.1E-05 45.7 6.5 113 108-252 148-261 (620)
63 PF01466 Skp1: Skp1 family, di 88.9 0.3 6.6E-06 36.4 2.1 43 108-150 14-58 (78)
64 PF01344 Kelch_1: Kelch motif; 88.4 0.45 9.8E-06 31.3 2.5 33 299-334 13-45 (47)
65 KOG1778 CREB binding protein/P 87.8 0.31 6.8E-06 46.6 2.0 132 46-185 36-168 (319)
66 KOG4152 Host cell transcriptio 86.7 1.3 2.8E-05 44.4 5.5 42 315-356 228-274 (830)
67 COG5201 SKP1 SCF ubiquitin lig 86.0 1 2.2E-05 36.4 3.6 83 47-135 13-120 (158)
68 PF07646 Kelch_2: Kelch motif; 83.8 0.78 1.7E-05 30.6 1.8 12 427-438 9-20 (49)
69 KOG3840 Uncharaterized conserv 82.5 6.8 0.00015 36.7 7.9 83 40-123 97-185 (438)
70 PF11822 DUF3342: Domain of un 81.8 0.92 2E-05 43.1 2.1 61 137-201 71-134 (317)
71 KOG2437 Muskelin [Signal trans 78.5 2.3 5E-05 42.7 3.7 23 335-357 259-283 (723)
72 PLN02772 guanylate kinase 76.6 2.8 6.2E-05 41.4 3.8 40 335-374 23-63 (398)
73 PF07250 Glyoxal_oxid_N: Glyox 75.9 8.3 0.00018 35.6 6.4 36 322-357 51-88 (243)
74 PF03089 RAG2: Recombination a 73.5 3.6 7.8E-05 38.4 3.3 12 427-438 162-173 (337)
75 PF07707 BACK: BTB And C-termi 70.6 15 0.00032 28.4 6.0 82 111-195 2-101 (103)
76 PLN02772 guanylate kinase 69.0 9.6 0.00021 37.8 5.4 41 316-356 50-96 (398)
77 KOG2715 Uncharacterized conser 67.8 29 0.00062 29.7 7.2 100 33-135 15-120 (210)
78 KOG2723 Uncharacterized conser 59.0 36 0.00078 30.9 6.7 84 46-132 17-105 (221)
79 PF07250 Glyoxal_oxid_N: Glyox 56.4 15 0.00031 34.0 3.9 33 406-438 81-137 (243)
80 PF03089 RAG2: Recombination a 47.5 1.2E+02 0.0026 28.7 8.1 36 321-356 135-174 (337)
81 KOG2437 Muskelin [Signal trans 41.5 52 0.0011 33.5 5.3 43 314-357 344-396 (723)
82 KOG2075 Topoisomerase TOP1-int 39.3 74 0.0016 32.2 5.9 35 137-175 184-218 (521)
83 PF00651 BTB: BTB/POZ domain; 29.3 54 0.0012 25.4 2.8 32 138-173 78-110 (111)
84 KOG3713 Voltage-gated K+ chann 20.2 1.6E+02 0.0035 29.9 4.6 54 74-130 79-133 (477)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.7e-71 Score=566.33 Aligned_cols=379 Identities=22% Similarity=0.371 Sum_probs=340.7
Q ss_pred CCceeEEEEe--eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHH
Q 013145 36 SMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 113 (449)
Q Consensus 36 ~~~~Dv~l~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~l 113 (449)
+.+|||++.+ ++|+|||+||||+||||++||+++++|+.+++|.|. ++++.+++.+++|+|||++.++. +||++|
T Consensus 34 ~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~l 110 (571)
T KOG4441|consen 34 GLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQEL 110 (571)
T ss_pred CCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHH
Confidence 5589999988 579999999999999999999999999999999999 89999999999999999999998 999999
Q ss_pred HHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHHHH
Q 013145 114 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVE 193 (449)
Q Consensus 114 l~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~ 193 (449)
|.+|++|||+.+++.|++||++ +++++||+.|..+|+.+ ++.+|.+.+..||.+||.++.+ +++|++|+.+++.
T Consensus 111 l~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~ 184 (571)
T KOG4441|consen 111 LEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELI 184 (571)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHH
Confidence 9999999999999999999999 89999999999999987 9999999999999999999999 9999999999999
Q ss_pred hcccCCCccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhccCCCC--chHHHHHHHHHH
Q 013145 194 AILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEAL 271 (449)
Q Consensus 194 ~lL~~d~L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~~~~l~--~~~~~~~l~ea~ 271 (449)
.+|++|+|+|.+|.+||+++++|++|| .+.|..++ ++|+++||||+|++.+|.+.+...+++ ++.|+.++.+|+
T Consensus 185 ~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 185 GLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred hhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 999999999999999999999999999 88899999 899999999999999999999999876 479999999999
Q ss_pred hhhccCccccccccccccccccc-ceeeeeeeeecceEEEeeCCccCeEEEeecCCCceeeccC--CCceeeeeeeecCe
Q 013145 272 FFKAEAPHRQRTLAAEESVTLNR-RFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP--SGRVYSQAFHLGGQ 348 (449)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~pr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~ 348 (449)
+||..| .+++.+++++++ || ...+.++++||... ..++ .+.+++||+.++.|..+++ .+|..+++++++|+
T Consensus 261 ~~~~~~-~~~~~~~~~~t~--~r~~~~~~l~~vGG~~~--~~~~-~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~ 334 (571)
T KOG4441|consen 261 KYHLLP-QRRPVMQSPRTR--PRRSVSGKLVAVGGYNR--QGQS-LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGK 334 (571)
T ss_pred HHhhCc-ccCccccCCCcc--cCcCCCCeEEEECCCCC--CCcc-cceeEEecCCcCcEeecCCCCcccccccEEEECCE
Confidence 999985 455678888887 57 45577888888632 1122 6889999999999999998 88999999999999
Q ss_pred eEEeeccc-ccCCCCceEEEE----------------------eEecee-------ecCcceeeeeccceeeecC---Cc
Q 013145 349 GFFLSAHC-NMDQQSSFHCFG----------------------LFLGMQ-------EKGSVSFAVDYEFAARSKP---TE 395 (449)
Q Consensus 349 iy~iGG~~-~~~~~r~~~~~~----------------------~~~g~~-------~~~~~~~~v~~~~~e~ydp---~W 395 (449)
||++||++ +....+++++|| +++|.+ +...+++ | ||||| +|
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~s-v-----E~YDp~~~~W 408 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNS-V-----ECYDPVTNKW 408 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccccc-E-----EEecCCCCcc
Confidence 99999999 644445555555 444544 2335666 6 99999 99
Q ss_pred ccccCCCcee------------EEecccccC---CCcceec-c----Ccee-------------eeCCeeEEEcCcc
Q 013145 396 EFVSKYKGNY------------TFTGGKAVG---YRNLFAI-P----WTSF-------------MADDSLYFINGIL 439 (449)
Q Consensus 396 ~~v~~m~~~r------------yv~GG~~~~---~~~ve~Y-p----W~~~-------------~~~~~iyv~GG~~ 439 (449)
+.++||+.+| |++||.++. +++|||| | |+.+ +++|+|||+||..
T Consensus 409 ~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 409 TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred cccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 9999999988 999998765 7999999 9 9987 8999999999964
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-63 Score=508.83 Aligned_cols=388 Identities=14% Similarity=0.200 Sum_probs=308.5
Q ss_pred hhHHHhhhccCCCCceeEEEEe---eeEEeeeeeecccCHHHHHhhcCCCCcCc-cceEEEecCCCCHHHHHHHhhhhcc
Q 013145 24 GDEAANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYS 99 (449)
Q Consensus 24 ~~~l~~~~~~~~~~~~Dv~l~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e~~-~~~i~l~~~~v~~~~f~~~l~yiYt 99 (449)
...|.++.++ +.+|||+|.+ ++|+|||+|||++|+||++||+++|+|+. +++|+|+ ++++++|+.+|+|+||
T Consensus 13 l~~l~~lr~~--~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 13 VSNISNLLDD--DILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYN 88 (557)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcC
Confidence 4556666666 4588888876 47999999999999999999999999875 7889998 9999999999999999
Q ss_pred CeeecCCcchHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhc
Q 013145 100 NTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 179 (449)
Q Consensus 100 g~i~~~~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~ 179 (449)
|+ ++. +|+++||.+|++||++.|++.|++||.+ .++++||+.++.+|..+ .+..|.++|.+||.+||.++.+
T Consensus 89 ~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 89 RH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred CC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHhC
Confidence 98 565 8999999999999999999999999999 89999999999876655 6777999999999999999999
Q ss_pred ccccccCCCHHHHHhcccCCC-ccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhccCCC
Q 013145 180 FQDEVMALPLAGVEAILSSDD-LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF 258 (449)
Q Consensus 180 ~~~~f~~L~~~~l~~lL~~d~-L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~~~~l 258 (449)
+++|++|+.++|.++|++|+ |+|.+|++||+|+++|++|| .++|. ++ .+||++|||++|++.++. .+.++++
T Consensus 161 -~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~VR~~~l~~~~~~-~~~~~~~ 233 (557)
T PHA02713 161 -TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSCIDIQNLDKKSRL-LLYSNKT 233 (557)
T ss_pred -ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhhhhHhhcchhhhh-hhcchHH
Confidence 99999999999999999987 79999999999999999998 66554 46 599999999999999987 4555565
Q ss_pred C--chHHHHHHHHHHhhhccCccccccccc---------------ccc------ccc--cccee------eeeeeeecce
Q 013145 259 D--HDVASKLVLEALFFKAEAPHRQRTLAA---------------EES------VTL--NRRFV------ERAYKYRPVK 307 (449)
Q Consensus 259 ~--~~~~~~~l~ea~~~~~~~~~~~~~~~~---------------~~~------~~~--pr~~~------~~~~~~~~~~ 307 (449)
+ .+.|.+++.+|++++..+++..-+... +.+ .+. ||... ..+|+.||..
T Consensus 234 i~~~~~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~ 313 (557)
T PHA02713 234 INMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYN 313 (557)
T ss_pred HHhhHHHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCC
Confidence 4 479999999998765432222101000 000 011 12110 1233344321
Q ss_pred EEEeeCCccCeEEEeecCCCceeeccC--CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEecee-----------
Q 013145 308 VVEFERPRQQCVVYLDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQ----------- 374 (449)
Q Consensus 308 ~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~----------- 374 (449)
......+.+++|||.++.|..+++ .+|.+++++++||+||++||.++....+++++||+..+.|
T Consensus 314 ---~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~ 390 (557)
T PHA02713 314 ---FNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS 390 (557)
T ss_pred ---CCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc
Confidence 011125678899999999999998 8899999999999999999987654556677777554444
Q ss_pred --------------ecC----------------------cceeeeeccceeeecC---CcccccCCCcee----------
Q 013145 375 --------------EKG----------------------SVSFAVDYEFAARSKP---TEEFVSKYKGNY---------- 405 (449)
Q Consensus 375 --------------~~~----------------------~~~~~v~~~~~e~ydp---~W~~v~~m~~~r---------- 405 (449)
|+. .+++ | |+||| +|+.++||+.+|
T Consensus 391 ~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-----e~YDP~td~W~~v~~m~~~r~~~~~~~~~~ 464 (557)
T PHA02713 391 SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK-V-----IRYDTVNNIWETLPNFWTGTIRPGVVSHKD 464 (557)
T ss_pred cccEEEECCEEEEEeCCCcccccccccccccccccccccccce-E-----EEECCCCCeEeecCCCCcccccCcEEEECC
Confidence 110 0223 5 99999 899999999988
Q ss_pred --EEecccccC---CCcceec-c-----Ccee-------------eeCCeeEEEcCcc
Q 013145 406 --TFTGGKAVG---YRNLFAI-P-----WTSF-------------MADDSLYFINGIL 439 (449)
Q Consensus 406 --yv~GG~~~~---~~~ve~Y-p-----W~~~-------------~~~~~iyv~GG~~ 439 (449)
||+||.++. ...||+| | |+.+ +++|+|||+||.+
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE 522 (557)
T ss_pred EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeec
Confidence 999998643 3468999 9 8876 8899999999953
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.3e-60 Score=479.13 Aligned_cols=362 Identities=15% Similarity=0.207 Sum_probs=286.1
Q ss_pred CCCceeEEEEe-eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHH
Q 013145 35 WSMDCSTVVRV-KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 113 (449)
Q Consensus 35 ~~~~~Dv~l~~-~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~l 113 (449)
.+.+|||++.. ++|+|||+|||++|||||+||+++|+|+.+ +|.+...++++++|+.+|+|+|||++.++. +||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~l 96 (480)
T PHA02790 19 TKKFKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNL 96 (480)
T ss_pred hhhhceEEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHH
Confidence 35689999988 689999999999999999999999999965 566532389999999999999999999998 999999
Q ss_pred HHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhccc--ccccCCCHHH
Q 013145 114 LMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ--DEVMALPLAG 191 (449)
Q Consensus 114 l~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~--~~f~~L~~~~ 191 (449)
|.||++||++.+++.|++||.+ +|+++||+.++.+|+.| ++.+|.++|.+||.+||.++.+ + ++|+.|+.
T Consensus 97 l~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~-- 168 (480)
T PHA02790 97 LRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM-- 168 (480)
T ss_pred HHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH--
Confidence 9999999999999999999999 89999999999999988 9999999999999999999998 7 89999996
Q ss_pred HHhcccCCCccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhc-CCCCCCCHHHHHhhhccCCCCchHHHHHHHHH
Q 013145 192 VEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARF-IRFPHMTCRKLKKVLTCNDFDHDVASKLVLEA 270 (449)
Q Consensus 192 l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~-vRf~~l~~~~L~~~~~~~~l~~~~~~~~l~ea 270 (449)
.+||++|+|+|.+|++||+|+++|++|+ ..|..++ .+++++ ||+++|++.++.+ +..++.++
T Consensus 169 -~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~l~~-----------~~~~~~~~ 231 (480)
T PHA02790 169 -KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRGINN-----------VKWILDCT 231 (480)
T ss_pred -HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHHHHH-----------HHHHHHHH
Confidence 6899999999999999999999999996 4566666 466766 8999999988754 23445555
Q ss_pred HhhhccCccccc--c--c-cccccc-ccc-------cceeeeeeeeecceEEEeeCCccCeEEEeecCCCceeeccC--C
Q 013145 271 LFFKAEAPHRQR--T--L-AAEESV-TLN-------RRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP--S 335 (449)
Q Consensus 271 ~~~~~~~~~~~~--~--~-~~~~~~-~~p-------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~ 335 (449)
..++..+..+.. . . ....+. ..+ ......+|+.||.. .....+.+++|||.+++|..+++ .
T Consensus 232 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~----~~~~~~~v~~Ydp~~~~W~~~~~m~~ 307 (480)
T PHA02790 232 KIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWM----NNEIHNNAIAVNYISNNWIPIPPMNS 307 (480)
T ss_pred HHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCC----CCCcCCeEEEEECCCCEEEECCCCCc
Confidence 554432111100 0 0 000000 000 00112355555531 11124678899999999999997 8
Q ss_pred CceeeeeeeecCeeEEeecccc-------------------cCCCCceEEEEeEeceee--cC---cceeeeeccceeee
Q 013145 336 GRVYSQAFHLGGQGFFLSAHCN-------------------MDQQSSFHCFGLFLGMQE--KG---SVSFAVDYEFAARS 391 (449)
Q Consensus 336 ~r~~~~~~v~gg~iy~iGG~~~-------------------~~~~r~~~~~~~~~g~~~--~~---~~~~~v~~~~~e~y 391 (449)
+|.+++++++||+||++||.++ |+..|..++..+++|+++ +| ..++ + |+|
T Consensus 308 ~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~-v-----e~y 381 (480)
T PHA02790 308 PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTT-T-----EYL 381 (480)
T ss_pred hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCcc-E-----EEE
Confidence 8999999999999999999743 445555666666666661 11 1233 5 999
Q ss_pred cC---CcccccCCCcee------------EEecccccCCCcceec-c----Ccee-------------eeCCeeEEEcCc
Q 013145 392 KP---TEEFVSKYKGNY------------TFTGGKAVGYRNLFAI-P----WTSF-------------MADDSLYFINGI 438 (449)
Q Consensus 392 dp---~W~~v~~m~~~r------------yv~GG~~~~~~~ve~Y-p----W~~~-------------~~~~~iyv~GG~ 438 (449)
|| +|+.++||+.+| ||+||. +|+| | |+.+ +++|+|||+||.
T Consensus 382 dp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 382 LPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred eCCCCEEEeCCCCCCccccceEEEECCEEEEECCc------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence 99 899999999998 888873 7899 9 9886 889999999996
Q ss_pred c
Q 013145 439 L 439 (449)
Q Consensus 439 ~ 439 (449)
.
T Consensus 456 ~ 456 (480)
T PHA02790 456 Y 456 (480)
T ss_pred C
Confidence 3
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.4e-56 Score=464.96 Aligned_cols=378 Identities=15% Similarity=0.249 Sum_probs=302.6
Q ss_pred CCceeEEEEe----eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHH
Q 013145 36 SMDCSTVVRV----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL 111 (449)
Q Consensus 36 ~~~~Dv~l~~----~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~ 111 (449)
+.+|||+|.+ ++|+|||.|||++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++.++. +++.
T Consensus 7 ~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~~ 79 (534)
T PHA03098 7 QKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNVK 79 (534)
T ss_pred CCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHHH
Confidence 4467777664 68999999999999999999999988 5679998 7 999999999999999999997 8999
Q ss_pred HHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHH
Q 013145 112 DVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAG 191 (449)
Q Consensus 112 ~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~ 191 (449)
+||.+|++||++.|++.|++||.+ .++.+||+.++.+|..+ ++..|.+.|.+||.+||.++.+ +++|++|+.+.
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~~ 153 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKNE 153 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHHH
Confidence 999999999999999999999999 89999999999999887 9999999999999999999999 99999999999
Q ss_pred HHhcccCCCccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhc------cCCCC-chHHH
Q 013145 192 VEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLT------CNDFD-HDVAS 264 (449)
Q Consensus 192 l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~------~~~l~-~~~~~ 264 (449)
+..+|++|+|+|.+|++||+++++|++|| .++|.+++ ++||++|||++|++++|.+++. +++++ +..|.
T Consensus 154 l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 229 (534)
T PHA03098 154 LIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCI 229 (534)
T ss_pred HHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHHHHHHHhhcCCcceeccccch
Confidence 99999999999999999999999999999 78899998 7999999999999999998775 55554 46788
Q ss_pred HHHHHHHhhhccC-ccccc---cc-c---------------ccccc-----cccccee-------eeeeeeecceEEEee
Q 013145 265 KLVLEALFFKAEA-PHRQR---TL-A---------------AEESV-----TLNRRFV-------ERAYKYRPVKVVEFE 312 (449)
Q Consensus 265 ~~l~ea~~~~~~~-~~~~~---~~-~---------------~~~~~-----~~pr~~~-------~~~~~~~~~~~~~~~ 312 (449)
.++.++..++... ++... .+ . .+..+ ..|+... ..+|+.||... .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~---~ 306 (534)
T PHA03098 230 KIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNK---N 306 (534)
T ss_pred HHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcC---C
Confidence 8888887654211 00000 00 0 00000 0011110 12333443210 0
Q ss_pred CCccCeEEEeecCCCceeeccC--CCceeeeeeeecCeeEEeecccc----------------------cCCCCceEEEE
Q 013145 313 RPRQQCVVYLDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHCN----------------------MDQQSSFHCFG 368 (449)
Q Consensus 313 ~~~~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~----------------------~~~~r~~~~~~ 368 (449)
....+.+.+||+.+++|..+++ .+|.+|+++++||+||++||.++ |+..|+.++..
T Consensus 307 ~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 307 NLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV 386 (534)
T ss_pred CCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence 1113567889999999999887 68999999999999999999864 33345555555
Q ss_pred eEeceee--cC------cceeeeeccceeeecC---CcccccCCCcee------------EEecccccC-----CCccee
Q 013145 369 LFLGMQE--KG------SVSFAVDYEFAARSKP---TEEFVSKYKGNY------------TFTGGKAVG-----YRNLFA 420 (449)
Q Consensus 369 ~~~g~~~--~~------~~~~~v~~~~~e~ydp---~W~~v~~m~~~r------------yv~GG~~~~-----~~~ve~ 420 (449)
+.+|.++ +| .+++ + |+||| +|+.+++||.+| |++||.+.. ...+++
T Consensus 387 ~~~~~iYv~GG~~~~~~~~~~-v-----~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 387 NVNNLIYVIGGISKNDELLKT-V-----ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EECCEEEEECCcCCCCcccce-E-----EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 5555551 11 1233 6 99999 899999999888 999997532 456999
Q ss_pred c-c----Ccee-------------eeCCeeEEEcCcc
Q 013145 421 I-P----WTSF-------------MADDSLYFINGIL 439 (449)
Q Consensus 421 Y-p----W~~~-------------~~~~~iyv~GG~~ 439 (449)
| | |+.+ +++|+|||+||..
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK 497 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCc
Confidence 9 9 9886 7799999999964
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=256.96 Aligned_cols=234 Identities=21% Similarity=0.296 Sum_probs=210.2
Q ss_pred ChhHHHhhhccCCCCceeEEEEeeeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCee
Q 013145 23 SGDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTL 102 (449)
Q Consensus 23 ~~~~l~~~~~~~~~~~~Dv~l~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i 102 (449)
.+.+++.++-+.+..|..++++-++|+|||+|||++|.|||||+.++|.|+.+..|.|+ +...++|..+|+|||||++
T Consensus 31 fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 31 FSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQ--ETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred hhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccc--cccHHHHHHHHHHHhhcce
Confidence 37889999999998888888888899999999999999999999999999999999998 7889999999999999999
Q ss_pred ecCC--cchHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcc
Q 013145 103 STTA--APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKF 180 (449)
Q Consensus 103 ~~~~--~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~ 180 (449)
.+.. .+..++.|.+|++|+++.|..+..+||++ -+..+|++.++..|..| ++++|...|+-|.-+|..++..
T Consensus 109 ~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mfmDrnA~~lL~- 182 (620)
T KOG4350|consen 109 DLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMFMDRNADQLLE- 182 (620)
T ss_pred ecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHHHhcCHHhhhc-
Confidence 8764 26788999999999999999999999999 69999999999998877 9999999999999999999999
Q ss_pred cccccCCCHHHHHhcccCCCccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhccCCCCc
Q 013145 181 QDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH 260 (449)
Q Consensus 181 ~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~~~~l~~ 260 (449)
++.|..|+.+.|.++|.+|..-. .|.++|.|+.+|-++| .. ... +.+++.||+|+|+..+|..++.+..+.+
T Consensus 183 ~~sFn~LSk~sL~e~l~RDsFfA-pE~~IFlAv~~W~~~N---sk---e~~-k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 183 DPSFNRLSKDSLKELLARDSFFA-PELKIFLAVRSWHQNN---SK---EAS-KVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred CcchhhhhHHHHHHHHhhhcccc-hHHHHHHHHHHHHhcC---ch---hhH-HHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 99999999999999999999865 7999999999999998 32 223 5899999999999999999999988875
Q ss_pred hHHHHHHHHHHhhhc
Q 013145 261 DVASKLVLEALFFKA 275 (449)
Q Consensus 261 ~~~~~~l~ea~~~~~ 275 (449)
+ +.|++|.+...
T Consensus 255 p---D~iLDAI~vrs 266 (620)
T KOG4350|consen 255 P---DTILDAIEVRS 266 (620)
T ss_pred H---HHHHHHHHhhc
Confidence 3 33555554433
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.93 E-value=4.8e-26 Score=216.41 Aligned_cols=225 Identities=23% Similarity=0.367 Sum_probs=201.2
Q ss_pred hhHHHhhhccCCCCceeEEEEe-----eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhc
Q 013145 24 GDEAANGNESSWSMDCSTVVRV-----KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMY 98 (449)
Q Consensus 24 ~~~l~~~~~~~~~~~~Dv~l~~-----~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiY 98 (449)
.+....+++|...+|+-|++.. +.+||||.|||..|+.|.+||++++.|....+|+++ ++++.+|..+|+|+|
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lp--dvepaaFl~~L~flY 179 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLP--DVEPAAFLAFLRFLY 179 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecC--CcChhHhHHHHHHHh
Confidence 6677789999998888888873 469999999999999999999999999977889988 999999999999999
Q ss_pred cCeeecCCcchHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhh-cccccchhchHHHHHHHHHHHHHhhhhh
Q 013145 99 SNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL-PSSVLMGEAVQPLTDAARQYLASRYKDM 177 (449)
Q Consensus 99 tg~i~~~~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~-a~~~~~~~~~~~L~~~~~~~i~~~f~~v 177 (449)
++.+.+.. +|++.+|.+|++|.++.|.+.|.+||+. .+.+.|.+..+-- |..+ .-++|...|++-|..+|.+.
T Consensus 180 sdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~id~~~~~a 253 (521)
T KOG2075|consen 180 SDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVIDKSFEDA 253 (521)
T ss_pred cchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHhhhHHHhh
Confidence 99999997 9999999999999999999999999999 7888887776654 6554 77999999999999999999
Q ss_pred hcccccccCCC--HHHHHhcccCCCccCCCHHHHHHHHHHHHHhcC------CChHHHHHHHHHHhhhcCCCCCCCHHHH
Q 013145 178 TKFQDEVMALP--LAGVEAILSSDDLQIASEDAVYDFVLKWARAQY------PRVEERREVLGSRLARFIRFPHMTCRKL 249 (449)
Q Consensus 178 ~~~~~~f~~L~--~~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~------~~~~~r~~~~~~~ll~~vRf~~l~~~~L 249 (449)
.. .+.|.+.. .+.++++|.++.|.+ +|..+|+|+++|+...+ .+.+.+++.+ ...+..||||.|..+++
T Consensus 254 l~-~EGf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp~m~~Eef 330 (521)
T KOG2075|consen 254 LT-PEGFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFPFMNIEEF 330 (521)
T ss_pred hC-ccceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeecccccchhhh
Confidence 99 99999988 999999999999999 59999999999998752 2355667888 69999999999999999
Q ss_pred HhhhccCCCC
Q 013145 250 KKVLTCNDFD 259 (449)
Q Consensus 250 ~~~~~~~~l~ 259 (449)
..-++...+.
T Consensus 331 a~~~e~sgIl 340 (521)
T KOG2075|consen 331 ARGVEQSGIL 340 (521)
T ss_pred ccCccccCCc
Confidence 8777766664
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=201.52 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=106.2
Q ss_pred eeeeecceEEEeeCCccCeEEEeecCCCceeeccC--CCceeeeeeeecCeeEEeecccccCCCCceEEEEe--------
Q 013145 300 AYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGL-------- 369 (449)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~-------- 369 (449)
+|+.||... +.-..+++++|||..++|..++| .+|..+++++++|+||++||++|.....++++||+
T Consensus 335 lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 335 LYVVGGYDS---GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred EEEEccccC---CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 566665422 22346889999999999999999 99999999999999999999998555566666664
Q ss_pred --------------Eecee---e----cC-cceeeeeccceeeecC---CcccccCCCcee------------EEecccc
Q 013145 370 --------------FLGMQ---E----KG-SVSFAVDYEFAARSKP---TEEFVSKYKGNY------------TFTGGKA 412 (449)
Q Consensus 370 --------------~~g~~---~----~~-~~~~~v~~~~~e~ydp---~W~~v~~m~~~r------------yv~GG~~ 412 (449)
++|++ | .. .+++ | ||||| +|+.++||+++| |++||++
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s-v-----e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS-V-----ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccce-E-----EEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 44444 1 11 4456 6 99999 999999999999 9999998
Q ss_pred cC--CCcceec-c----Ccee-------------eeCCeeEEEcCcc
Q 013145 413 VG--YRNLFAI-P----WTSF-------------MADDSLYFINGIL 439 (449)
Q Consensus 413 ~~--~~~ve~Y-p----W~~~-------------~~~~~iyv~GG~~ 439 (449)
+. +++||+| | |+.+ +++|+||++||..
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEeccc
Confidence 75 7889999 9 9987 8899999999953
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.81 E-value=1.7e-18 Score=179.33 Aligned_cols=117 Identities=9% Similarity=0.132 Sum_probs=91.1
Q ss_pred CeEEEeecCCCceeeccC--CCceeeeeeeecCeeEEeeccc-c----------------------cCCCCceEEEEeEe
Q 013145 317 QCVVYLDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHC-N----------------------MDQQSSFHCFGLFL 371 (449)
Q Consensus 317 ~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~-~----------------------~~~~r~~~~~~~~~ 371 (449)
..+++||+.+++|..+++ .+|.+++++++||+||++||.+ + |...|+.++..+++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 467889999999999987 7788899999999999999975 2 23334444444455
Q ss_pred cee---ec----CcceeeeeccceeeecC---CcccccCCCcee------------EEecccccC---------------
Q 013145 372 GMQ---EK----GSVSFAVDYEFAARSKP---TEEFVSKYKGNY------------TFTGGKAVG--------------- 414 (449)
Q Consensus 372 g~~---~~----~~~~~~v~~~~~e~ydp---~W~~v~~m~~~r------------yv~GG~~~~--------------- 414 (449)
|++ |+ ..+++ | |+||| +|+.++|||.+| ||+||.++.
T Consensus 352 g~IYviGG~~~~~~~~s-v-----e~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTNVERT-I-----ECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCCCCce-E-----EEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 554 11 12344 6 99999 899999999988 999997531
Q ss_pred -----CCcceec-c----Ccee-------------eeCCeeEEEcCcc
Q 013145 415 -----YRNLFAI-P----WTSF-------------MADDSLYFINGIL 439 (449)
Q Consensus 415 -----~~~ve~Y-p----W~~~-------------~~~~~iyv~GG~~ 439 (449)
+++||+| | |+.+ +++|+|||+||..
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~ 473 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIK 473 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCC
Confidence 4679999 9 9887 8899999999953
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.80 E-value=4.6e-19 Score=165.20 Aligned_cols=183 Identities=17% Similarity=0.283 Sum_probs=165.9
Q ss_pred HHhhhccCCCCceeEEEEe--eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEe--cCCCCHHHHHHHhhhhccCee
Q 013145 27 AANGNESSWSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR--INASEEAALMELLNFMYSNTL 102 (449)
Q Consensus 27 l~~~~~~~~~~~~Dv~l~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~--~~~v~~~~f~~~l~yiYtg~i 102 (449)
..++|.+ +..+||++.+ .+-+.||.-|. .|+||.+||+|-|+|++++.|.|. ++.++..+|..++.-+|.+++
T Consensus 60 yq~lf~q--~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 60 YQNLFLQ--GENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHhc--CCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 4466664 4467888887 68999999995 699999999999999999876655 667999999999999999999
Q ss_pred ecCCcchHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccc
Q 013145 103 STTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQD 182 (449)
Q Consensus 103 ~~~~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~ 182 (449)
.|.. +.+..+|.+|.++++++|.+.|.+.+.+ .|++.|++.+++.+.+| +.+.+++.|.+++..|+..+.. ..
T Consensus 137 eI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~nl~~i~~-~q 209 (488)
T KOG4682|consen 137 EIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNNLMTIQN-VQ 209 (488)
T ss_pred eccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHhhHhhhh-HH
Confidence 9997 8999999999999999999999999999 89999999999999887 9999999999999999999988 67
Q ss_pred cccCCCHHHHHhcccCCCccCCC-HHHHHHHHHHHHHh
Q 013145 183 EVMALPLAGVEAILSSDDLQIAS-EDAVYDFVLKWARA 219 (449)
Q Consensus 183 ~f~~L~~~~l~~lL~~d~L~v~~-E~~v~~av~~Wi~~ 219 (449)
-+.+++.+.+..+|.|++|-|-+ |..+|..+..|+--
T Consensus 210 ~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~WmfL 247 (488)
T KOG4682|consen 210 LLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMFL 247 (488)
T ss_pred HHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHHh
Confidence 77789999999999999998766 99999999999753
No 10
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.76 E-value=3.3e-19 Score=143.28 Aligned_cols=103 Identities=34% Similarity=0.628 Sum_probs=93.1
Q ss_pred HHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHHHHhcccCCCccCCCHHHHHHHHHHHHHhcCC
Q 013145 143 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 222 (449)
Q Consensus 143 ~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~ 222 (449)
|+.++.+|..+ ++.+|.+.|.+||..||.++.+ +++|.+||.+.+..+|+++++++.+|.++|+++++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 88999999887 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhc
Q 013145 223 RVEERREVLGSRLARFIRFPHMTCRKLKKVLT 254 (449)
Q Consensus 223 ~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~ 254 (449)
+.+|.+++ .+|+++|||++|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 88899998 7999999999999999988653
No 11
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=146.29 Aligned_cols=163 Identities=18% Similarity=0.292 Sum_probs=135.3
Q ss_pred HhhhccCCCCceeEEEEe---eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeec
Q 013145 28 ANGNESSWSMDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLST 104 (449)
Q Consensus 28 ~~~~~~~~~~~~Dv~l~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~ 104 (449)
..+++..+++|..+.+.+ +.++|||.|||++|++.+ |.++-.|. +.+..+. ++++++|..+++||||+++++
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEidf 132 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEIDF 132 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhccc--ccCHHHHHHhheeeecccccc
Confidence 356666665555555543 569999999999999885 34333332 2334444 999999999999999999987
Q ss_pred CCc-chHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhccccc
Q 013145 105 TAA-PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDE 183 (449)
Q Consensus 105 ~~~-~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~ 183 (449)
..+ ..+.++...|+.||++.|++.|.+-+.. .++++||+.++++|+.. +...|...|...|+.++.++-. .+
T Consensus 133 k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA~~W~dL~~--a~ 205 (280)
T KOG4591|consen 133 KEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIAGAWDDLGK--AD 205 (280)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHHhhccccCh--HH
Confidence 652 5678999999999999999999999999 69999999999999987 8999999999999999999876 89
Q ss_pred ccCCCHHHHHhcccCCCcc
Q 013145 184 VMALPLAGVEAILSSDDLQ 202 (449)
Q Consensus 184 f~~L~~~~l~~lL~~d~L~ 202 (449)
|.+++...+..++....-+
T Consensus 206 FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 206 FAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHhccHHHHHHHHcCCCcc
Confidence 9999999999999876543
No 12
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.75 E-value=3e-18 Score=139.61 Aligned_cols=106 Identities=26% Similarity=0.423 Sum_probs=89.5
Q ss_pred HHhhhccCCCCceeEEEE-eeeEEeeeeeecccCHHHHHhhcCC-CCcCccceEEEecCCCCHHHHHHHhhhhccCeeec
Q 013145 27 AANGNESSWSMDCSTVVR-VKTLHISSPILAAKSPFFYKLFSNG-MKESEQRHVALRINASEEAALMELLNFMYSNTLST 104 (449)
Q Consensus 27 l~~~~~~~~~~~~Dv~l~-~~~~~aHk~vLaa~S~yF~~mf~~~-~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~ 104 (449)
|.+++++....|+.+.+. ...|+|||.||+++|+||++||.++ +.+....+|.++ ++++++|+.+++|+|+|++.+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~ 78 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIEI 78 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEEE
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCcccC
Confidence 456777776555555555 4689999999999999999999998 566655667777 999999999999999999999
Q ss_pred C-CcchHHHHHHHHhhcCChhHHHHHHHHhhc
Q 013145 105 T-AAPALLDVLMAADKFEVASCMRYCSRLLRN 135 (449)
Q Consensus 105 ~-~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~ 135 (449)
+ . +++.+++.+|++|+++.|++.|.++|.+
T Consensus 79 ~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 79 NSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp E-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 7 7 8999999999999999999999999976
No 13
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.67 E-value=2.8e-16 Score=125.55 Aligned_cols=99 Identities=27% Similarity=0.519 Sum_probs=89.9
Q ss_pred HHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHHHHhcccCCCccCCCHHHHHHHHHHHHHhcCC
Q 013145 143 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 222 (449)
Q Consensus 143 ~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~ 222 (449)
|+.++.+|..+ ++..|.+.|.+||..||..+.+ +++|.+||.+.+..+|++|+|++.+|.++|+++++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 56778777665 8999999999999999999999 8999999999999999999999888999999999999998
Q ss_pred ChHHHHHHHHHHhhhcCCCCCCCHHHHHh
Q 013145 223 RVEERREVLGSRLARFIRFPHMTCRKLKK 251 (449)
Q Consensus 223 ~~~~r~~~~~~~ll~~vRf~~l~~~~L~~ 251 (449)
...|. ++ ..++++|||++|+++.|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 55554 77 7999999999999998765
No 14
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=9.4e-16 Score=119.21 Aligned_cols=88 Identities=27% Similarity=0.485 Sum_probs=79.8
Q ss_pred eEEEEe--eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHHHHH
Q 013145 40 STVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAA 117 (449)
Q Consensus 40 Dv~l~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll~~A 117 (449)
|+++.+ +.|++||.+|+++|+||++||.+++.++....+.++ ++++++|+.+++|+|++++.++. .++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHH
Confidence 344444 689999999999999999999998888777888888 89999999999999999999997 7999999999
Q ss_pred hhcCChhHHHHHH
Q 013145 118 DKFEVASCMRYCS 130 (449)
Q Consensus 118 ~~l~l~~L~~~c~ 130 (449)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999884
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.60 E-value=2.5e-14 Score=148.88 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=153.8
Q ss_pred CCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHHHHhcccCCCccCCCHHHHHHHHHHH
Q 013145 137 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKW 216 (449)
Q Consensus 137 ~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W 216 (449)
.++.+|+..++..|..+ ..+.|++.|.+|+..+... .. .-+++.+ ... . +-.++.+++..+
T Consensus 72 ~i~~~~~~~ll~~A~~l----~~~~l~~~C~~~l~~~l~~-~n-c~~~~~~-----a~~-----~---~~~~L~~~~~~~ 132 (534)
T PHA03098 72 NITSNNVKDILSIANYL----IIDFLINLCINYIIKIIDD-NN-CIDIYRF-----SFF-----Y---GCKKLYSAAYNY 132 (534)
T ss_pred EEcHHHHHHHHHHHHHh----CcHHHHHHHHHHHHHhCCH-hH-HHHHHHH-----HHH-----c---CcHHHHHHHHHH
Confidence 58999999999999887 8999999999999876531 11 1111111 111 1 223556666677
Q ss_pred HHhcCCChHHHHHHHHHHhhhcCCCCCCCHHHHHhhhccCCCC--ch-HHHH------------------HHHHHHhhhc
Q 013145 217 ARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HD-VASK------------------LVLEALFFKA 275 (449)
Q Consensus 217 i~~~~~~~~~r~~~~~~~ll~~vRf~~l~~~~L~~~~~~~~l~--~~-~~~~------------------~l~ea~~~~~ 275 (449)
+..+ + .++.+.=.|..|+.+.|..+++++.+. ++ ...+ -+.+..++..
T Consensus 133 i~~n----------f-~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~ 201 (534)
T PHA03098 133 IRNN----------I-ELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITF 201 (534)
T ss_pred HHHH----------H-HHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccc
Confidence 6554 2 355555667777777777777666653 11 0001 1111111111
Q ss_pred cCcc-------------cccccccccc------------cccccce--eeeeeeeecceEEEeeCCccCeEEEeecCCCc
Q 013145 276 EAPH-------------RQRTLAAEES------------VTLNRRF--VERAYKYRPVKVVEFERPRQQCVVYLDLKREE 328 (449)
Q Consensus 276 ~~~~-------------~~~~~~~~~~------------~~~pr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 328 (449)
.++. ..+...++.. ...||.. ...+++.++.. + ....+.+|++..++
T Consensus 202 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-~~~~~~~~~~~~~~ 275 (534)
T PHA03098 202 LSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMS-----I-FTYNYITNYSPLSE 275 (534)
T ss_pred cCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccc-----h-hhceeeecchhhhh
Confidence 1100 0000000000 0001111 01112212211 1 12345568888889
Q ss_pred eeeccCCC-ceeeeeeeecCeeEEeecccc-----------------------cCCCCceEEEEeEecee---ec----C
Q 013145 329 CENLFPSG-RVYSQAFHLGGQGFFLSAHCN-----------------------MDQQSSFHCFGLFLGMQ---EK----G 377 (449)
Q Consensus 329 W~~~~~~~-r~~~~~~v~gg~iy~iGG~~~-----------------------~~~~r~~~~~~~~~g~~---~~----~ 377 (449)
|..+++.+ +..|+++++|+.+|++||.++ |...|..++..+++|.+ |+ +
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~ 355 (534)
T PHA03098 276 INTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI 355 (534)
T ss_pred cccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE
Confidence 99887633 445689999999999999754 23344445555555544 11 1
Q ss_pred cceeeeeccceeeecC---CcccccCCCcee------------EEecccccC---CCcceec-c----Ccee--------
Q 013145 378 SVSFAVDYEFAARSKP---TEEFVSKYKGNY------------TFTGGKAVG---YRNLFAI-P----WTSF-------- 426 (449)
Q Consensus 378 ~~~~~v~~~~~e~ydp---~W~~v~~m~~~r------------yv~GG~~~~---~~~ve~Y-p----W~~~-------- 426 (449)
.+++ + |+||| +|+.++|||.+| |++||...+ ++++++| | |+.+
T Consensus 356 ~~~~-v-----~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~ 429 (534)
T PHA03098 356 SLNT-V-----ESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY 429 (534)
T ss_pred ecce-E-----EEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc
Confidence 2333 6 99999 999999999998 999996432 6889999 9 9886
Q ss_pred -----eeCCeeEEEcCcc
Q 013145 427 -----MADDSLYFINGIL 439 (449)
Q Consensus 427 -----~~~~~iyv~GG~~ 439 (449)
+++|+|||+||..
T Consensus 430 ~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred CceEEEECCEEEEECCcc
Confidence 6799999999964
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.53 E-value=9e-15 Score=147.26 Aligned_cols=137 Identities=15% Similarity=0.265 Sum_probs=117.9
Q ss_pred CCceeEEEEee-eEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhcc-CeeecC----Ccch
Q 013145 36 SMDCSTVVRVK-TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYS-NTLSTT----AAPA 109 (449)
Q Consensus 36 ~~~~Dv~l~~~-~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYt-g~i~~~----~~~~ 109 (449)
..||+|++..+ .++|||++|+++++||..||..-|.|++. |.+....+..+.|+.+|+|+|+ .+..+- ..+.
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 44888888874 59999999999999999999999999876 4444336779999999999994 444321 1267
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhc
Q 013145 110 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTK 179 (449)
Q Consensus 110 v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~ 179 (449)
+.++|..||.|.+.+|++.|+.-|.+ .++..||-.++++|..| ++.+|...|++||+.|...+..
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999999999 89999999999999887 9999999999999999887765
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.44 E-value=3.6e-13 Score=137.61 Aligned_cols=107 Identities=9% Similarity=-0.041 Sum_probs=80.4
Q ss_pred CeEEEeecCCCceeeccC--CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeec---------C----ccee
Q 013145 317 QCVVYLDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK---------G----SVSF 381 (449)
Q Consensus 317 ~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~---------~----~~~~ 381 (449)
+.+++|||.+++|..++| .+|..|++++++|+||++||.++. .+++++||+..+.|.. + .+..
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 568899999999999998 789999999999999999997642 2556777766665510 0 0000
Q ss_pred e--eeccceeeecC---CcccccCCCcee------------EEecccccC--CCcceec-c----Cce
Q 013145 382 A--VDYEFAARSKP---TEEFVSKYKGNY------------TFTGGKAVG--YRNLFAI-P----WTS 425 (449)
Q Consensus 382 ~--v~~~~~e~ydp---~W~~v~~m~~~r------------yv~GG~~~~--~~~ve~Y-p----W~~ 425 (449)
. |.=...|+||| +|+.++||+.+| ||+||.+++ .++||+| | |+.
T Consensus 409 ~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 409 RLFLVGRNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred EEEEECCceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 0 00011299999 999999999988 999998754 6789999 9 864
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.36 E-value=3.1e-12 Score=124.50 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=84.1
Q ss_pred cCeEEEeecCCCce----eeccC--CCceeeeeeeecCeeEEeecccc----------------------cC-CCCceEE
Q 013145 316 QQCVVYLDLKREEC----ENLFP--SGRVYSQAFHLGGQGFFLSAHCN----------------------MD-QQSSFHC 366 (449)
Q Consensus 316 ~~~~~~~d~~~~~W----~~~~~--~~r~~~~~~v~gg~iy~iGG~~~----------------------~~-~~r~~~~ 366 (449)
.+.+++||+.++.| ..+++ .+|..|++++++|+||++||... |. ..|..++
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~ 166 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPV 166 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence 56788899988887 66665 67888999999999999999743 22 2344444
Q ss_pred EEeEeceee--cC---cceeeeeccceeeecC---CcccccCCCc---ee---------------EEecccccC------
Q 013145 367 FGLFLGMQE--KG---SVSFAVDYEFAARSKP---TEEFVSKYKG---NY---------------TFTGGKAVG------ 414 (449)
Q Consensus 367 ~~~~~g~~~--~~---~~~~~v~~~~~e~ydp---~W~~v~~m~~---~r---------------yv~GG~~~~------ 414 (449)
..+++++++ .| .....+ ++||| +|+.+++|+. |+ ||+||.+..
T Consensus 167 ~~~~~~~iYv~GG~~~~~~~~~-----~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIAYTDG-----YKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred EEEECCEEEEEcCCCCccccce-----EEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 445555551 11 111224 89999 8999998742 22 999997632
Q ss_pred ----------------------------CCcceec-c----Ccee--------------eeCCeeEEEcCc
Q 013145 415 ----------------------------YRNLFAI-P----WTSF--------------MADDSLYFINGI 438 (449)
Q Consensus 415 ----------------------------~~~ve~Y-p----W~~~--------------~~~~~iyv~GG~ 438 (449)
.++|++| | |+.+ +++|+|||+||.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 2569999 8 9875 789999999995
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.29 E-value=1.6e-11 Score=120.65 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=78.3
Q ss_pred cCeEEEeec--CCCceeeccC---CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceee
Q 013145 316 QQCVVYLDL--KREECENLFP---SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 390 (449)
Q Consensus 316 ~~~~~~~d~--~~~~W~~~~~---~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ 390 (449)
.+.+.+||+ ..++|..+++ .+|..+++++++|+||++||......... ...++. + |+
T Consensus 28 ~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~------------~~~~~~-v-----~~ 89 (346)
T TIGR03547 28 GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGS------------PQVFDD-V-----YR 89 (346)
T ss_pred CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCc------------ceeccc-E-----EE
Confidence 466778885 6789999986 36889999999999999999643110000 012334 6 99
Q ss_pred ecC---Cccccc-CCCcee-------------EEecccccC------------------------------------CCc
Q 013145 391 SKP---TEEFVS-KYKGNY-------------TFTGGKAVG------------------------------------YRN 417 (449)
Q Consensus 391 ydp---~W~~v~-~m~~~r-------------yv~GG~~~~------------------------------------~~~ 417 (449)
||| +|+.++ +++.+| ||+||.+.. +++
T Consensus 90 Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 90 YDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred EECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 999 899997 455544 999997531 268
Q ss_pred ceec-c----Ccee--------------eeCCeeEEEcCc
Q 013145 418 LFAI-P----WTSF--------------MADDSLYFINGI 438 (449)
Q Consensus 418 ve~Y-p----W~~~--------------~~~~~iyv~GG~ 438 (449)
|++| | |+.+ +++|+|||+||.
T Consensus 170 v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 170 VLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred EEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 9999 9 9986 779999999996
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.26 E-value=2.7e-11 Score=117.86 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=82.0
Q ss_pred eEEEee-cC-CCceeeccC--CCceeeeeeeecCeeEEeecccccCCCCceEEEE-------------------------
Q 013145 318 CVVYLD-LK-REECENLFP--SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFG------------------------- 368 (449)
Q Consensus 318 ~~~~~d-~~-~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~------------------------- 368 (449)
.+..|+ +. +.+|..+++ .+|.+++++++++.||++||.++....+++++|+
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~ 119 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSA 119 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceE
Confidence 344454 33 237999886 7888888999999999999986533334444444
Q ss_pred -eEecee---ec----CcceeeeeccceeeecC---CcccccCCCc-ee------------EEecccccC-CCcceec-c
Q 013145 369 -LFLGMQ---EK----GSVSFAVDYEFAARSKP---TEEFVSKYKG-NY------------TFTGGKAVG-YRNLFAI-P 422 (449)
Q Consensus 369 -~~~g~~---~~----~~~~~~v~~~~~e~ydp---~W~~v~~m~~-~r------------yv~GG~~~~-~~~ve~Y-p 422 (449)
+++|++ +. ..++. + ++||| +|+.+++||. +| ||+||.++. ..++++| |
T Consensus 120 ~~~~~~iYv~GG~~~~~~~~~-v-----~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~ 193 (323)
T TIGR03548 120 CYKDGTLYVGGGNRNGKPSNK-S-----YLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSP 193 (323)
T ss_pred EEECCEEEEEeCcCCCccCce-E-----EEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEec
Confidence 344444 11 12334 6 99999 8999999984 56 999998654 5678999 9
Q ss_pred ----Ccee-------------------eeCCeeEEEcCcc
Q 013145 423 ----WTSF-------------------MADDSLYFINGIL 439 (449)
Q Consensus 423 ----W~~~-------------------~~~~~iyv~GG~~ 439 (449)
|+.+ +.+++|||+||..
T Consensus 194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 194 KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 9776 2269999999963
No 21
>PLN02153 epithiospecifier protein
Probab=99.21 E-value=9e-11 Score=115.13 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred cCeEEEeecCCCceeecc-------CCCceeeeeeeecCeeEEeeccccc------CCCCceEEEEe-------------
Q 013145 316 QQCVVYLDLKREECENLF-------PSGRVYSQAFHLGGQGFFLSAHCNM------DQQSSFHCFGL------------- 369 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~-------~~~r~~~~~~v~gg~iy~iGG~~~~------~~~r~~~~~~~------------- 369 (449)
.+.+++||+.+++|..++ |.+|..|++++.+++||++||.+.. ...++.++||+
T Consensus 100 ~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~ 179 (341)
T PLN02153 100 FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE 179 (341)
T ss_pred cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCC
Confidence 457889999999999875 3579999999999999999997521 01234445553
Q ss_pred ------------Eecee---ec--------C---cceeeeeccceeeecC---CcccccC---CCcee------------
Q 013145 370 ------------FLGMQ---EK--------G---SVSFAVDYEFAARSKP---TEEFVSK---YKGNY------------ 405 (449)
Q Consensus 370 ------------~~g~~---~~--------~---~~~~~v~~~~~e~ydp---~W~~v~~---m~~~r------------ 405 (449)
++|++ +. + .....+ ++||| +|+.+++ +|.+|
T Consensus 180 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v-----~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~i 254 (341)
T PLN02153 180 NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAV-----QFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYI 254 (341)
T ss_pred CCCCCCcceEEEECCeEEEEeccccccccCCccceecCce-----EEEEcCCCcEEeccccCCCCCCcceeeeEEECCEE
Confidence 34433 10 0 001225 99999 8999875 56666
Q ss_pred EEeccccc---------C--CCcceec-c----Ccee-------------------ee-CCeeEEEcCccc
Q 013145 406 TFTGGKAV---------G--YRNLFAI-P----WTSF-------------------MA-DDSLYFINGILH 440 (449)
Q Consensus 406 yv~GG~~~---------~--~~~ve~Y-p----W~~~-------------------~~-~~~iyv~GG~~~ 440 (449)
||+||... + .+++++| | |+.+ +. +++||++||.+.
T Consensus 255 yv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 255 IIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred EEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCC
Confidence 99999631 1 4578999 8 9865 22 358999999743
No 22
>PLN02153 epithiospecifier protein
Probab=99.20 E-value=8.2e-11 Score=115.40 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=84.3
Q ss_pred cCeEEEeecCCCceeeccC---CCc---eeeeeeeecCeeEEeeccccc---------------------------CCCC
Q 013145 316 QQCVVYLDLKREECENLFP---SGR---VYSQAFHLGGQGFFLSAHCNM---------------------------DQQS 362 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~---~~r---~~~~~~v~gg~iy~iGG~~~~---------------------------~~~r 362 (449)
.+.+++||+.+++|..+++ .+| ..|++++++++||++||.++. ...|
T Consensus 49 ~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 49 DKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred eCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 3568889999999999875 233 367889999999999997542 2344
Q ss_pred ceEEEEeEecee---ec----C------cceeeeeccceeeecC---CcccccCCC---cee------------EEeccc
Q 013145 363 SFHCFGLFLGMQ---EK----G------SVSFAVDYEFAARSKP---TEEFVSKYK---GNY------------TFTGGK 411 (449)
Q Consensus 363 ~~~~~~~~~g~~---~~----~------~~~~~v~~~~~e~ydp---~W~~v~~m~---~~r------------yv~GG~ 411 (449)
..|...+.++++ +. + .+++ + ++||| +|+.++++. .+| |++||.
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-v-----~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRT-I-----EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccce-E-----EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 555555555554 11 1 1223 5 99999 899998875 444 899885
Q ss_pred c-----cC-----CCcceec-c----Ccee----------------eeCCeeEEEcCcc
Q 013145 412 A-----VG-----YRNLFAI-P----WTSF----------------MADDSLYFINGIL 439 (449)
Q Consensus 412 ~-----~~-----~~~ve~Y-p----W~~~----------------~~~~~iyv~GG~~ 439 (449)
. ++ ...+++| | |+.+ +++++|||+||..
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECccc
Confidence 3 11 4679999 8 9875 7799999999964
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.19 E-value=4.9e-11 Score=117.29 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=75.3
Q ss_pred CeEEEeecCCCceeeccC--C-CceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeee--
Q 013145 317 QCVVYLDLKREECENLFP--S-GRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARS-- 391 (449)
Q Consensus 317 ~~~~~~d~~~~~W~~~~~--~-~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~y-- 391 (449)
+.+++|||.+++|..+++ . +|..+++++++|+||++||..... .++. . + ++|
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~----------------~-~-----~~y~~ 224 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-LRTA----------------E-V-----KQYLF 224 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC-ccch----------------h-e-----EEEEe
Confidence 678999999999999887 3 578888999999999999964311 1111 1 2 344
Q ss_pred cC---CcccccCCCcee-------------------EEecccccC-------------------CCcceec-c----Cce
Q 013145 392 KP---TEEFVSKYKGNY-------------------TFTGGKAVG-------------------YRNLFAI-P----WTS 425 (449)
Q Consensus 392 dp---~W~~v~~m~~~r-------------------yv~GG~~~~-------------------~~~ve~Y-p----W~~ 425 (449)
|| +|+.+++|+.+| ||+||.+.. +.++|+| | |+.
T Consensus 225 ~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 225 TGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred cCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 34 799999997531 999996410 2368999 8 987
Q ss_pred e-------------eeCCeeEEEcCccc
Q 013145 426 F-------------MADDSLYFINGILH 440 (449)
Q Consensus 426 ~-------------~~~~~iyv~GG~~~ 440 (449)
+ +++|+|||+||...
T Consensus 305 ~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 305 VGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred cCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 6 67999999999643
No 24
>PLN02193 nitrile-specifier protein
Probab=99.17 E-value=1.3e-10 Score=118.68 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=85.7
Q ss_pred cCeEEEeecCCCceeeccC------CCceeeeeeeecCeeEEeecccccC-------------------------CCCce
Q 013145 316 QQCVVYLDLKREECENLFP------SGRVYSQAFHLGGQGFFLSAHCNMD-------------------------QQSSF 364 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~------~~r~~~~~~v~gg~iy~iGG~~~~~-------------------------~~r~~ 364 (449)
.+.+++||+.+++|..+++ ..|..|++++++++||++||.++.. ..|..
T Consensus 192 ~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 271 (470)
T PLN02193 192 DKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271 (470)
T ss_pred eCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence 3568889999999998754 1356788899999999999986522 33444
Q ss_pred EEEEeEecee---e----cCcceeeeeccceeeecC---CcccccC---CCcee------------EEecccccC-CCcc
Q 013145 365 HCFGLFLGMQ---E----KGSVSFAVDYEFAARSKP---TEEFVSK---YKGNY------------TFTGGKAVG-YRNL 418 (449)
Q Consensus 365 ~~~~~~~g~~---~----~~~~~~~v~~~~~e~ydp---~W~~v~~---m~~~r------------yv~GG~~~~-~~~v 418 (449)
|+..+.++++ + ...++. + ++||| +|+.+++ ++.+| |++||.++. +.++
T Consensus 272 h~~~~~~~~iYv~GG~~~~~~~~~-~-----~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv 345 (470)
T PLN02193 272 HSMAADEENVYVFGGVSATARLKT-L-----DSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDV 345 (470)
T ss_pred eEEEEECCEEEEECCCCCCCCcce-E-----EEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCce
Confidence 4444444444 1 112333 5 99999 8999875 44444 999997655 6789
Q ss_pred eec-c----Ccee----------------eeCCeeEEEcCcc
Q 013145 419 FAI-P----WTSF----------------MADDSLYFINGIL 439 (449)
Q Consensus 419 e~Y-p----W~~~----------------~~~~~iyv~GG~~ 439 (449)
++| | |+.+ +++++|||+||..
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 999 8 9875 7799999999964
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.13 E-value=4.1e-10 Score=111.82 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=33.6
Q ss_pred cCeEEEeecC--CCceeeccC---CCceeeeeeeecCeeEEeeccc
Q 013145 316 QQCVVYLDLK--REECENLFP---SGRVYSQAFHLGGQGFFLSAHC 356 (449)
Q Consensus 316 ~~~~~~~d~~--~~~W~~~~~---~~r~~~~~~v~gg~iy~iGG~~ 356 (449)
.+.+..||+. .++|..+++ .+|..++++++||+||++||..
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence 3457778875 478999886 4788889999999999999975
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.10 E-value=2.2e-10 Score=113.75 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=74.9
Q ss_pred cCeEEEeecCCCceeeccC---CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeec
Q 013145 316 QQCVVYLDLKREECENLFP---SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSK 392 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~---~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~yd 392 (449)
.+.+++||+.+++|..+++ .+|..|++++++++||++||..... .|+.+.+ + .+||
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~---------------~-----~~~~ 246 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVK---------------Q-----GKFT 246 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhhe---------------E-----EEec
Confidence 3678899999999999876 3677888999999999999964311 1221111 1 3456
Q ss_pred C---CcccccCCCcee--------------------EEecccccC----------------C---Ccceec-c----Cce
Q 013145 393 P---TEEFVSKYKGNY--------------------TFTGGKAVG----------------Y---RNLFAI-P----WTS 425 (449)
Q Consensus 393 p---~W~~v~~m~~~r--------------------yv~GG~~~~----------------~---~~ve~Y-p----W~~ 425 (449)
| +|+.+++||.+| ||+||.+.. + .++|+| | |+.
T Consensus 247 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 326 (376)
T PRK14131 247 GNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK 326 (376)
T ss_pred CCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence 6 899999986531 999996421 1 257899 8 986
Q ss_pred e-------------eeCCeeEEEcCcc
Q 013145 426 F-------------MADDSLYFINGIL 439 (449)
Q Consensus 426 ~-------------~~~~~iyv~GG~~ 439 (449)
+ +++|+|||+||..
T Consensus 327 ~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 327 VGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred cCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 6 6899999999963
No 27
>PLN02193 nitrile-specifier protein
Probab=99.02 E-value=1.7e-09 Score=110.38 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=77.6
Q ss_pred cCeEEEeecCCCceeeccC-----CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEecee----------------
Q 013145 316 QQCVVYLDLKREECENLFP-----SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQ---------------- 374 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~-----~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~---------------- 374 (449)
.+.+++||+.+++|..+++ .+|.+|++++.+++||++||.++....+..++||+..+.|
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 5678899999999998865 5799999999999999999986544445555665444433
Q ss_pred ------------e--cC-cceeeeeccceeeecC---CcccccCC---Ccee------------EEeccccc--------
Q 013145 375 ------------E--KG-SVSFAVDYEFAARSKP---TEEFVSKY---KGNY------------TFTGGKAV-------- 413 (449)
Q Consensus 375 ------------~--~~-~~~~~v~~~~~e~ydp---~W~~v~~m---~~~r------------yv~GG~~~-------- 413 (449)
+ .+ .++. + ++||| +|+.++++ |.+| ||+||...
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~d-v-----~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDD-V-----HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred EEEEECCcEEEEECCCCCccCc-e-----EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccC
Confidence 0 11 1233 5 99999 89999875 6666 99999742
Q ss_pred --C-CCcceec-c----Ccee
Q 013145 414 --G-YRNLFAI-P----WTSF 426 (449)
Q Consensus 414 --~-~~~ve~Y-p----W~~~ 426 (449)
. .+++++| | |+.+
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccceeccEEEEEcCcCEEEEc
Confidence 1 4578999 8 9866
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.85 E-value=5.3e-09 Score=93.68 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=82.1
Q ss_pred cCeEEEeecCCCceeecc-----CCCceeeeeeeecCeeEEeecccc---------------------c------CCCCc
Q 013145 316 QQCVVYLDLKREECENLF-----PSGRVYSQAFHLGGQGFFLSAHCN---------------------M------DQQSS 363 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~-----~~~r~~~~~~v~gg~iy~iGG~~~---------------------~------~~~r~ 363 (449)
.+...+|||.++.|.... |..|-.|.++|+|+.+|+.||+.. | ..-|.
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD 183 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD 183 (392)
T ss_pred cceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh
Confidence 456778999999998753 388999999999999999999853 0 01123
Q ss_pred eEEEEeEecee--------ecCcceeeeeccceeeecC----------CcccccC---CCcee------------EEecc
Q 013145 364 FHCFGLFLGMQ--------EKGSVSFAVDYEFAARSKP----------TEEFVSK---YKGNY------------TFTGG 410 (449)
Q Consensus 364 ~~~~~~~~g~~--------~~~~~~~~v~~~~~e~ydp----------~W~~v~~---m~~~r------------yv~GG 410 (449)
.|...+++++. ..+..-+.- |.|+- .|..-++ .|..| |+.||
T Consensus 184 FH~a~~~~~~MYiFGGR~D~~gpfHs~~-----e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGG 258 (392)
T KOG4693|consen 184 FHTASVIDGMMYIFGGRSDESGPFHSIH-----EQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGG 258 (392)
T ss_pred hhhhhhccceEEEeccccccCCCccchh-----hhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecc
Confidence 33333445543 122222212 55543 6887654 33334 99999
Q ss_pred cccC----CCcceec-c----Ccee----------------eeCCeeEEEcCc
Q 013145 411 KAVG----YRNLFAI-P----WTSF----------------MADDSLYFINGI 438 (449)
Q Consensus 411 ~~~~----~~~ve~Y-p----W~~~----------------~~~~~iyv~GG~ 438 (449)
+++. .+.+.|| | |..+ +.++|||.+||-
T Consensus 259 Yng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 259 YNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCC
Confidence 9876 7789999 9 9987 889999999996
No 29
>PF13964 Kelch_6: Kelch motif
Probab=98.62 E-value=4e-08 Score=67.26 Aligned_cols=47 Identities=21% Similarity=0.125 Sum_probs=38.3
Q ss_pred CceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeecC---CcccccCCCcee
Q 013145 336 GRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKYKGNY 405 (449)
Q Consensus 336 ~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp---~W~~v~~m~~~r 405 (449)
+|..|+++++||+||++||.++. ....+. + |+||| +|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----------------~~~~~~-v-----~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----------------GKYSND-V-----ERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----------------CCcccc-E-----EEEcCCCCcEEECCCCCCCC
Confidence 57889999999999999997652 012234 7 99999 999999999987
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=1.8e-07 Score=87.68 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=103.5
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCccc--eEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHHHHHhhcCCh
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESEQR--HVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVA 123 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~--~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll~~A~~l~l~ 123 (449)
.++|||++++. +.+||+.||.|++.|++.+ ...+..+.....+.+.+++|+|+.+.++.. +-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhh
Confidence 46999999994 7899999999999996532 222333478889999999999999999987 8999999999999765
Q ss_pred --h-HHHHHHHHhhcC--CCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCC
Q 013145 124 --S-CMRYCSRLLRNM--PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 187 (449)
Q Consensus 124 --~-L~~~c~~~l~~~--~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L 187 (449)
. |+.++..-|.+- -++.-|++.++..+-. -....|.+.+..|+..|...+.. .+++...
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd----~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~ 442 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWD----LVACRLEQFAETHEARHLLLLLP-DPEGDSS 442 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhcC-CchhhHH
Confidence 2 555555544430 2455567777765433 37788999999999999999988 7887653
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.44 E-value=1.7e-07 Score=63.15 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=35.5
Q ss_pred CceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeecC---CcccccCCC
Q 013145 336 GRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKYK 402 (449)
Q Consensus 336 ~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp---~W~~v~~m~ 402 (449)
+|.+|++++++|+||++||.++. ...+++ | |+||| +|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~-v-----~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN-----------------NQPTNS-V-----EVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST-----------------SSBEEE-E-----EEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc-----------------Cceeee-E-----EEEeCCCCEEEEcCCCC
Confidence 57889999999999999998761 112344 7 99999 999999997
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.35 E-value=2e-06 Score=77.39 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=31.4
Q ss_pred EEEeecCCCceeeccC---------------CCceeeeeeeecCeeEEeecccc
Q 013145 319 VVYLDLKREECENLFP---------------SGRVYSQAFHLGGQGFFLSAHCN 357 (449)
Q Consensus 319 ~~~~d~~~~~W~~~~~---------------~~r~~~~~~v~gg~iy~iGG~~~ 357 (449)
+..++..+.+|.+++| -.|..|.++...+++|+-||.+.
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND 99 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRND 99 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccC
Confidence 4557778888888765 34778999999999999999865
No 33
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.27 E-value=1.9e-06 Score=88.29 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=74.5
Q ss_pred hHHHhhhccC--CCCceeEEEEe--eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEe----------cCCCCHHHH
Q 013145 25 DEAANGNESS--WSMDCSTVVRV--KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALR----------INASEEAAL 90 (449)
Q Consensus 25 ~~l~~~~~~~--~~~~~Dv~l~~--~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~----------~~~v~~~~f 90 (449)
..+++++... ..++.||++.+ ..|+|||.||+++|++||.+|......+..+.|.+. .+++.+..|
T Consensus 543 ~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mf 622 (1267)
T KOG0783|consen 543 GSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMF 622 (1267)
T ss_pred hhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHH
Confidence 4455555533 34467999988 469999999999999999999875444433444443 559999999
Q ss_pred HHHhhhhccCeeec--CC-----------cchHH-------HHHHHHhhcCChhHHHHHHH
Q 013145 91 MELLNFMYSNTLST--TA-----------APALL-------DVLMAADKFEVASCMRYCSR 131 (449)
Q Consensus 91 ~~~l~yiYtg~i~~--~~-----------~~~v~-------~ll~~A~~l~l~~L~~~c~~ 131 (449)
+.+|+||||+..-- .+ .+|.. .+...+.+|++.+|......
T Consensus 623 e~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 623 EILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred HHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 99999999983311 11 12333 37778888888777765443
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.03 E-value=2.7e-06 Score=76.55 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=71.9
Q ss_pred hhHHHhhhccCCCCceeEEEEeeeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeee
Q 013145 24 GDEAANGNESSWSMDCSTVVRVKTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS 103 (449)
Q Consensus 24 ~~~l~~~~~~~~~~~~Dv~l~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~ 103 (449)
..||....+.....+.|+++.-..|+|||++||++||+|+.+.+++-.......-.+...+++.++|+.+|.|+|||+.-
T Consensus 118 ~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 118 LKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred HHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccc
Confidence 56777777777788999999999999999999999999999887643222222122223388999999999999999986
Q ss_pred cCC--cchHHHHHHHHhhcCC
Q 013145 104 TTA--APALLDVLMAADKFEV 122 (449)
Q Consensus 104 ~~~--~~~v~~ll~~A~~l~l 122 (449)
+.. ..|+.-|-+++.-|+.
T Consensus 198 mEd~~fqn~diL~QL~edFG~ 218 (401)
T KOG2838|consen 198 MEDLGFQNSDILEQLCEDFGC 218 (401)
T ss_pred hhhcCCchHHHHHHHHHhhCC
Confidence 543 1445555555555554
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.88 E-value=5.4e-06 Score=74.63 Aligned_cols=99 Identities=20% Similarity=0.327 Sum_probs=70.7
Q ss_pred eEEeeeeeecccCHHHHHhhcCCCCcC---------ccceEEEecCCCCHHHHH-HHhhhhccCeeecCC----------
Q 013145 47 TLHISSPILAAKSPFFYKLFSNGMKES---------EQRHVALRINASEEAALM-ELLNFMYSNTLSTTA---------- 106 (449)
Q Consensus 47 ~~~aHk~vLaa~S~yF~~mf~~~~~e~---------~~~~i~l~~~~v~~~~f~-~~l~yiYtg~i~~~~---------- 106 (449)
+++|||+|.|++|++||.++....+|. ....|.+. +-+-|.+|. .++.++||+.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifd-E~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFD-ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeech-hhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 389999999999999999986433322 22456554 234556665 578999999876431
Q ss_pred -----------------cchHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHh
Q 013145 107 -----------------APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYL 147 (449)
Q Consensus 107 -----------------~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~ 147 (449)
...+++|+.+|.+|.+.-|.+.|++.+.. ....++..+++
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 12347888899999999999999998888 66666655444
No 36
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.83 E-value=9.1e-05 Score=75.86 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=72.9
Q ss_pred cCeEEEeecCCCceeeccC-----CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceee
Q 013145 316 QQCVVYLDLKREECENLFP-----SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 390 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~-----~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ 390 (449)
.+.+..||+.+.+|..+.+ .+|.+|.+++.|.++|+.||.+.-.. .++. + ..
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~-----------------~~nd-l-----~i 194 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD-----------------SLND-L-----HI 194 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc-----------------ceee-e-----ee
Confidence 4567779999999987754 78999999999999999999765321 1223 4 66
Q ss_pred ecC---Cccccc---CCCcee------------EEecccc-cC--CCcceec-c----Ccee----------------ee
Q 013145 391 SKP---TEEFVS---KYKGNY------------TFTGGKA-VG--YRNLFAI-P----WTSF----------------MA 428 (449)
Q Consensus 391 ydp---~W~~v~---~m~~~r------------yv~GG~~-~~--~~~ve~Y-p----W~~~----------------~~ 428 (449)
||+ +|+.+. +-|.|| +++||.. ++ +.++.++ - |..+ +.
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~ 274 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS 274 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE
Confidence 666 677663 344555 8888876 33 6667666 3 7754 77
Q ss_pred CCeeEEEcCc
Q 013145 429 DDSLYFINGI 438 (449)
Q Consensus 429 ~~~iyv~GG~ 438 (449)
++.++++||.
T Consensus 275 ~~~~~l~gG~ 284 (482)
T KOG0379|consen 275 GDHLLLFGGG 284 (482)
T ss_pred CCEEEEEcCC
Confidence 8999999996
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.74 E-value=6.1e-05 Score=72.07 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=70.2
Q ss_pred eEEEeecCCCceeeccC----CCceeeeeeeec-CeeEEeecccc-cCCCCceEEEEeEeceeecCcceeeeeccceeee
Q 013145 318 CVVYLDLKREECENLFP----SGRVYSQAFHLG-GQGFFLSAHCN-MDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARS 391 (449)
Q Consensus 318 ~~~~~d~~~~~W~~~~~----~~r~~~~~~v~g-g~iy~iGG~~~-~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~y 391 (449)
....|+.+.+.|..+.. .+|..|.+++.- |.+++.||.-. -++.+-.|.-| . +.+
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD--------------~-----W~f 159 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD--------------L-----WLF 159 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhh--------------e-----eee
Confidence 35569999999998743 889999887765 89999999643 22222222211 1 334
Q ss_pred cC---CcccccC--CCcee------------EEecccccC------CCcceec-c----Ccee----------------e
Q 013145 392 KP---TEEFVSK--YKGNY------------TFTGGKAVG------YRNLFAI-P----WTSF----------------M 427 (449)
Q Consensus 392 dp---~W~~v~~--m~~~r------------yv~GG~~~~------~~~ve~Y-p----W~~~----------------~ 427 (449)
|. +|+.+.. =|.+| ++.||+... ++.|.|| - |+.+ +
T Consensus 160 d~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~v 239 (521)
T KOG1230|consen 160 DLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSV 239 (521)
T ss_pred eeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEe
Confidence 43 7777653 33344 777997543 6778888 3 9887 4
Q ss_pred e-CCeeEEEcCccc
Q 013145 428 A-DDSLYFINGILH 440 (449)
Q Consensus 428 ~-~~~iyv~GG~~~ 440 (449)
. +|.|||.||.+-
T Consensus 240 tpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 240 TPQGGIVVYGGYSK 253 (521)
T ss_pred cCCCcEEEEcchhH
Confidence 4 899999999743
No 38
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00018 Score=64.78 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=74.6
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCC--cCccceEEEecCCCCHHHHHHHhhhhccCeeecCC-cchHHHHHHHHhhcCC
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKFEV 122 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~--e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~-~~~v~~ll~~A~~l~l 122 (449)
..|..+|.-|.....+|++||.+++. -..++.|-| |=+|..|+.+|+||-.|.+.+.. ...+.+|+.-|.+|++
T Consensus 14 ~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL 90 (230)
T KOG2716|consen 14 TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLL 90 (230)
T ss_pred eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhH
Confidence 56999999999999999999999874 233466877 77999999999999988888653 2677899999999999
Q ss_pred hhHHHHHHHHhhc
Q 013145 123 ASCMRYCSRLLRN 135 (449)
Q Consensus 123 ~~L~~~c~~~l~~ 135 (449)
++|++.|..-+..
T Consensus 91 ~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 91 DGLVELCQSAIAR 103 (230)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998866
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.63 E-value=6.5e-05 Score=50.92 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=33.3
Q ss_pred CceeeeeeeecCeeEEeecc-cccCCCCceEEEEeEeceeecCcceeeeeccceeeecC---CcccccCCC
Q 013145 336 GRVYSQAFHLGGQGFFLSAH-CNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKYK 402 (449)
Q Consensus 336 ~r~~~~~~v~gg~iy~iGG~-~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp---~W~~v~~m~ 402 (449)
+|..|++++++++||++||. .... ....+. + +.||+ +|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~----------------~~~~~~-v-----~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNG----------------GSSSND-V-----WVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCC----------------Ccccce-e-----EEEECCCCEEeecCCCC
Confidence 57789999999999999997 1111 111233 6 88998 899999885
No 40
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.55 E-value=0.00048 Score=70.60 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=73.8
Q ss_pred eEEEeecCCCceeeccC-----CCceeeeeeeecCeeEEeecccc-cCCCCceEEEEeEeceeecCcceeeeeccceeee
Q 013145 318 CVVYLDLKREECENLFP-----SGRVYSQAFHLGGQGFFLSAHCN-MDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARS 391 (449)
Q Consensus 318 ~~~~~d~~~~~W~~~~~-----~~r~~~~~~v~gg~iy~iGG~~~-~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~y 391 (449)
.+..+|.....|...+. .+|..|.+++++.+||++||.+. .......++||+..+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~------------------- 149 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTR------------------- 149 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCC-------------------
Confidence 37789999999987654 68999999999999999999874 222334444444444
Q ss_pred cCCcccccC---CCcee------------EEecccccC---CCcceec-c----Ccee----------------eeCCee
Q 013145 392 KPTEEFVSK---YKGNY------------TFTGGKAVG---YRNLFAI-P----WTSF----------------MADDSL 432 (449)
Q Consensus 392 dp~W~~v~~---m~~~r------------yv~GG~~~~---~~~ve~Y-p----W~~~----------------~~~~~i 432 (449)
+|+...+ .|.+| ||.||.... +.++.+| + |..+ ++++++
T Consensus 150 --~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 150 --TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKL 227 (482)
T ss_pred --cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeE
Confidence 4444433 23333 999997543 7789999 6 9987 889999
Q ss_pred EEEcCcc
Q 013145 433 YFINGIL 439 (449)
Q Consensus 433 yv~GG~~ 439 (449)
+|+||-.
T Consensus 228 ~v~gG~~ 234 (482)
T KOG0379|consen 228 LVFGGGD 234 (482)
T ss_pred EEEeccc
Confidence 9999954
No 41
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=6.5e-05 Score=72.17 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=100.3
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHH---HHHHHHhhcCC
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALL---DVLMAADKFEV 122 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~---~ll~~A~~l~l 122 (449)
+.+.+|+++++++|+.|++|+..+..+...+.+.+. +.++..++.+..|.|+..-.... +... .++.+|..++.
T Consensus 110 g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 110 GFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred cEEEcCceEEEeeecceeeecccccchhcccccccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhcccccc
Confidence 458999999999999999999998777766667776 88999999999999996544433 3443 88899999999
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHH--hhhhhh
Q 013145 123 ASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLAS--RYKDMT 178 (449)
Q Consensus 123 ~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~--~f~~v~ 178 (449)
+.|+..|...+.+ .+...+....+..+..+ ....+...+..++.. +++.+.
T Consensus 187 ~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 187 RHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred HHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHHHhccchHhHHH
Confidence 9999999999999 67777777777766544 667777777777776 444544
No 42
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.40 E-value=0.00071 Score=65.00 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=73.1
Q ss_pred EEEeecCCCceeeccC----CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeecC-
Q 013145 319 VVYLDLKREECENLFP----SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP- 393 (449)
Q Consensus 319 ~~~~d~~~~~W~~~~~----~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp- 393 (449)
.+.||..+++|..+.. .+|..|.+++-..++++.||+... .|..+.|+ . | .+||-
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~--nr~y~YyN------------D-v-----y~FdLd 215 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS--NRDYIYYN------------D-V-----YAFDLD 215 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC--CCceEEee------------e-e-----EEEecc
Confidence 3469999999999863 899999999999999999998654 34444332 2 3 55554
Q ss_pred --CcccccC---CCcee-------------EEecccccC-----------CCcceec-c---------Ccee--------
Q 013145 394 --TEEFVSK---YKGNY-------------TFTGGKAVG-----------YRNLFAI-P---------WTSF-------- 426 (449)
Q Consensus 394 --~W~~v~~---m~~~r-------------yv~GG~~~~-----------~~~ve~Y-p---------W~~~-------- 426 (449)
+|+.+.| -|+|| ||.|||+.. ...+..- | |+.+
T Consensus 216 tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs 295 (521)
T KOG1230|consen 216 TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS 295 (521)
T ss_pred ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC
Confidence 8999876 24566 888998632 2334444 5 8887
Q ss_pred ---------eeCCeeEEEcCc
Q 013145 427 ---------MADDSLYFINGI 438 (449)
Q Consensus 427 ---------~~~~~iyv~GG~ 438 (449)
.-+++-|.+||+
T Consensus 296 pRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 296 PRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred CCCceeEEEecCCceEEecce
Confidence 447899999997
No 43
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.39 E-value=8.5e-05 Score=69.71 Aligned_cols=88 Identities=11% Similarity=0.302 Sum_probs=71.6
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCc-cceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHHHHHhhcCChh
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS 124 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~-~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll~~A~~l~l~~ 124 (449)
+.|.|.+-+|-..=.||+..+.....++. ..+|.|.. ..|-.+|+=+++|+......++. .||..+|.-|++|+|++
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHH
Confidence 46999999999999999999965222222 23455542 56889999999999998888886 89999999999999999
Q ss_pred HHHHHHHHhhc
Q 013145 125 CMRYCSRLLRN 135 (449)
Q Consensus 125 L~~~c~~~l~~ 135 (449)
|++.|..|+.+
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 99999888866
No 44
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.30 E-value=0.00017 Score=56.34 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=62.9
Q ss_pred EEEEe--eeEEeeeeeec-ccCHHHHHhhcCC---CCcCccceEEEecCCCCHHHHHHHhhhhcc-CeeecCCcchHHHH
Q 013145 41 TVVRV--KTLHISSPILA-AKSPFFYKLFSNG---MKESEQRHVALRINASEEAALMELLNFMYS-NTLSTTAAPALLDV 113 (449)
Q Consensus 41 v~l~~--~~~~aHk~vLa-a~S~yF~~mf~~~---~~e~~~~~i~l~~~~v~~~~f~~~l~yiYt-g~i~~~~~~~v~~l 113 (449)
|.|.+ +.|.+-+..|. ....+|.+|+.+. .....+.++-| |-++..|+.||+|+.+ +.+..........+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 44555 56888888887 5567999999864 33445567777 7799999999999999 77776533688999
Q ss_pred HHHHhhcCChhH-HHHH
Q 013145 114 LMAADKFEVASC-MRYC 129 (449)
Q Consensus 114 l~~A~~l~l~~L-~~~c 129 (449)
+.-|.+|+|+.+ ++.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 6766
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.26 E-value=0.00075 Score=66.37 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=27.2
Q ss_pred eecCCCceeecc---------CCCceeeeeeeecCeeEEeecccc
Q 013145 322 LDLKREECENLF---------PSGRVYSQAFHLGGQGFFLSAHCN 357 (449)
Q Consensus 322 ~d~~~~~W~~~~---------~~~r~~~~~~v~gg~iy~iGG~~~ 357 (449)
+...+..|..+- |-+|..|...+.|++-|+.||..+
T Consensus 113 LQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaN 157 (830)
T KOG4152|consen 113 LQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAN 157 (830)
T ss_pred hhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccc
Confidence 344455566552 278999999999999999999743
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.15 E-value=0.00027 Score=47.80 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=24.9
Q ss_pred Cceeeeeeeec-CeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeecC---CcccccCCC
Q 013145 336 GRVYSQAFHLG-GQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKYK 402 (449)
Q Consensus 336 ~r~~~~~~v~g-g~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp---~W~~v~~m~ 402 (449)
+|.+|+++.++ +.+|++||.+... ..++. + +.||+ +|+.+++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-----------------~~~~d-~-----~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-----------------SPLND-L-----WIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-----------------EE----E-----EEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-----------------cccCC-E-----EEEECCCCEEEECCCCC
Confidence 58899999984 8999999976421 11233 5 88998 899999887
No 47
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.13 E-value=0.00086 Score=50.74 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=56.1
Q ss_pred eEEeeeeeecccCHHHHHhhcCCCC--cCccceEEEecCCCCHHHHHHHhhhh-----ccCe------eecCCcchHHHH
Q 013145 47 TLHISSPILAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFM-----YSNT------LSTTAAPALLDV 113 (449)
Q Consensus 47 ~~~aHk~vLaa~S~yF~~mf~~~~~--e~~~~~i~l~~~~v~~~~f~~~l~yi-----Ytg~------i~~~~~~~v~~l 113 (449)
+|-.-|- .|.-|+-.|+||+++.. |+..++|.++ +++...++.+.+|+ |++. .+|.. +-+++|
T Consensus 28 efiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp-emaleL 103 (112)
T KOG3473|consen 28 EFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP-EMALEL 103 (112)
T ss_pred EEEEeeh-hhhhhhHHHHHHcCCccccccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCCH-HHHHHH
Confidence 3444443 35679999999998654 5566889998 99999999999998 6665 34554 899999
Q ss_pred HHHHhhcCC
Q 013145 114 LMAADKFEV 122 (449)
Q Consensus 114 l~~A~~l~l 122 (449)
|.+|++|.+
T Consensus 104 L~aAn~Lec 112 (112)
T KOG3473|consen 104 LMAANYLEC 112 (112)
T ss_pred HHHhhhhcC
Confidence 999999853
No 48
>smart00612 Kelch Kelch domain.
Probab=96.91 E-value=0.0011 Score=43.96 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=16.3
Q ss_pred eeecC---CcccccCCCcee
Q 013145 389 ARSKP---TEEFVSKYKGNY 405 (449)
Q Consensus 389 e~ydp---~W~~v~~m~~~r 405 (449)
|+||| +|+.+++|+.+|
T Consensus 18 ~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 18 EVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred EEECCCCCeEccCCCCCCcc
Confidence 99999 899999999988
No 49
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.0042 Score=58.89 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=33.3
Q ss_pred cCeEEEeecCCCceeeccC---CCceeeeeeeecC-eeEEeecccc
Q 013145 316 QQCVVYLDLKREECENLFP---SGRVYSQAFHLGG-QGFFLSAHCN 357 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~---~~r~~~~~~v~gg-~iy~iGG~~~ 357 (449)
-+.+.+|||..|+|..+.. .....+.++++++ +||+.||.+-
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccH
Confidence 4567789999999999864 5556667788888 8999999753
No 50
>smart00612 Kelch Kelch domain.
Probab=96.46 E-value=0.0045 Score=40.91 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=28.2
Q ss_pred cCeEEEeecCCCceeeccC--CCceeeeeeeecC
Q 013145 316 QQCVVYLDLKREECENLFP--SGRVYSQAFHLGG 347 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~gg 347 (449)
.+.+++||+.+++|..+++ .+|.+|++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 5778899999999999887 8899999888876
No 51
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.07 E-value=0.0093 Score=47.47 Aligned_cols=73 Identities=10% Similarity=0.233 Sum_probs=52.2
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCc-cceEEEecCCCCHHHHHHHhhhhccCeee-------------------cC
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESE-QRHVALRINASEEAALMELLNFMYSNTLS-------------------TT 105 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~-~~~i~l~~~~v~~~~f~~~l~yiYtg~i~-------------------~~ 105 (449)
..|.+.+.+. ..|.-++.|+.+...+.. ...|.++ +++..+|+.+++|++.-.-. ++
T Consensus 12 ~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d 88 (104)
T smart00512 12 EVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID 88 (104)
T ss_pred CEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence 3688888876 579999999986433222 2356666 99999999999999642111 33
Q ss_pred CcchHHHHHHHHhhcCC
Q 013145 106 AAPALLDVLMAADKFEV 122 (449)
Q Consensus 106 ~~~~v~~ll~~A~~l~l 122 (449)
. +.+.+|+.||++|+|
T Consensus 89 ~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 89 Q-ETLFELILAANYLDI 104 (104)
T ss_pred H-HHHHHHHHHHHhhCC
Confidence 2 577888888888875
No 52
>PF13854 Kelch_5: Kelch motif
Probab=95.69 E-value=0.018 Score=37.36 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCceeeeeeeecCeeEEeecccc
Q 013145 334 PSGRVYSQAFHLGGQGFFLSAHCN 357 (449)
Q Consensus 334 ~~~r~~~~~~v~gg~iy~iGG~~~ 357 (449)
|.+|..|++++++++||+.||.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~ 25 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSG 25 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccC
Confidence 468999999999999999999874
No 53
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.022 Score=48.83 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=67.5
Q ss_pred eEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeee-----------------------
Q 013145 47 TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS----------------------- 103 (449)
Q Consensus 47 ~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~----------------------- 103 (449)
.|.+-..+. ..|.-+++++...-.......|.|+ .|....|..+++|++.-+-.
T Consensus 16 ~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~F 92 (162)
T KOG1724|consen 16 IFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEF 92 (162)
T ss_pred eeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHH
Confidence 466655554 4688888887653222221356666 99999999999999863311
Q ss_pred --cCCcchHHHHHHHHhhcCChhHHHHHHHHhhcC--CCChhhHHHHhh
Q 013145 104 --TTAAPALLDVLMAADKFEVASCMRYCSRLLRNM--PMTPESALLYLE 148 (449)
Q Consensus 104 --~~~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~--~l~~~n~~~i~~ 148 (449)
++. .++.+|..||++|.|++|.+.|++.+..+ .-+++....++.
T Consensus 93 lk~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 93 LKVDQ-GTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFN 140 (162)
T ss_pred HhcCH-HHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcC
Confidence 222 57899999999999999999999987663 235555444443
No 54
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.19 E-value=0.044 Score=48.54 Aligned_cols=84 Identities=17% Similarity=0.214 Sum_probs=61.4
Q ss_pred eeeEEeeeeeeccc--CHHHHHhhcCCC---CcCccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHHHHHhh
Q 013145 45 VKTLHISSPILAAK--SPFFYKLFSNGM---KESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADK 119 (449)
Q Consensus 45 ~~~~~aHk~vLaa~--S~yF~~mf~~~~---~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll~~A~~ 119 (449)
++.|.--+--|..+ -.-..+||.+.- .+..+.-+-| |-+|.-|+.+|+|+-.|++.....-++..+|+.|++
T Consensus 17 Gk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArf 93 (302)
T KOG1665|consen 17 GKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARF 93 (302)
T ss_pred CeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhH
Confidence 34454444333332 335678998732 2344455555 778999999999999999986655789999999999
Q ss_pred cCChhHHHHHHH
Q 013145 120 FEVASCMRYCSR 131 (449)
Q Consensus 120 l~l~~L~~~c~~ 131 (449)
|||-+|++..++
T Consensus 94 f~i~sL~~hle~ 105 (302)
T KOG1665|consen 94 FQILSLKDHLED 105 (302)
T ss_pred HhhHhHHhHHhh
Confidence 999999988777
No 55
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=0.085 Score=50.32 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=60.0
Q ss_pred cCeEEEeecC--CCceeeccC---CCceeeeeeeecCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceee
Q 013145 316 QQCVVYLDLK--REECENLFP---SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 390 (449)
Q Consensus 316 ~~~~~~~d~~--~~~W~~~~~---~~r~~~~~~v~gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ 390 (449)
...|..+|.. ...|..++. .+|-....++++|+||+.||..-... .+. ..++. + -+
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~------------~~~nd-~-----Y~ 117 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSP------------QVFND-A-----YR 117 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC-CCc------------eEeee-e-----EE
Confidence 5667777765 468999875 88888888999999999999643211 110 01223 4 89
Q ss_pred ecC---CcccccCCCceeEEecccccCCCcceeccCceeeeCC-eeEEEcCcc
Q 013145 391 SKP---TEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADD-SLYFINGIL 439 (449)
Q Consensus 391 ydp---~W~~v~~m~~~ryv~GG~~~~~~~ve~YpW~~~~~~~-~iyv~GG~~ 439 (449)
||| +|+.+...... = .+|. +.+ .+++ +||++||++
T Consensus 118 y~p~~nsW~kl~t~sP~-g-l~G~-----~~~-------~~~~~~i~f~GGvn 156 (381)
T COG3055 118 YDPSTNSWHKLDTRSPT-G-LVGA-----STF-------SLNGTKIYFFGGVN 156 (381)
T ss_pred ecCCCChhheecccccc-c-cccc-----eeE-------ecCCceEEEEcccc
Confidence 999 89998754422 1 1222 111 5666 899999974
No 56
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=94.31 E-value=0.036 Score=37.24 Aligned_cols=38 Identities=8% Similarity=-0.093 Sum_probs=27.3
Q ss_pred cCeeEEeecccccCCCCceEEEEeEeceeecCcceeeeeccceeeecC---CcccccCCCcee
Q 013145 346 GGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKP---TEEFVSKYKGNY 405 (449)
Q Consensus 346 gg~iy~iGG~~~~~~~r~~~~~~~~~g~~~~~~~~~~v~~~~~e~ydp---~W~~v~~m~~~r 405 (449)
|+++|+.||.+.-. ...++. + ..||+ +|+.++++|.+|
T Consensus 1 g~~~~vfGG~~~~~----------------~~~~nd-~-----~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG----------------GTRLND-V-----WVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred CCEEEEECCcCCCC----------------CCEecC-E-----EEEECCCCEEEECCCCCCCc
Confidence 67899999976300 112233 5 78888 899999999888
No 57
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.29 E-value=0.12 Score=50.43 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=62.6
Q ss_pred EEEEe--eeEEeeeeeecccC--HHHHHhhcCCCCcCccc--eEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHH
Q 013145 41 TVVRV--KTLHISSPILAAKS--PFFYKLFSNGMKESEQR--HVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVL 114 (449)
Q Consensus 41 v~l~~--~~~~aHk~vLaa~S--~yF~~mf~~~~~e~~~~--~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll 114 (449)
|.+.+ +.|.-.+.-|+... .+|-+++++.+.-.+.. .|-| |=+|+.|..+|+|+-||++++.. -....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g-~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASG-VFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCcc-Cchhhhh
Confidence 44555 45777777775544 69999999877654443 3666 77999999999999999999976 4444444
Q ss_pred -HHHhhcCChhHHH
Q 013145 115 -MAADKFEVASCMR 127 (449)
Q Consensus 115 -~~A~~l~l~~L~~ 127 (449)
.-|.+|+|..|..
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 4999999999887
No 58
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.44 E-value=0.23 Score=35.23 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=37.1
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhcc
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYS 99 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYt 99 (449)
+.|.+.+.++ ..|..++.|+.+...+.. .|.++ +++...|+.+++|++.
T Consensus 11 ~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 11 QEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred CEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 4688888777 479999999986433322 56666 9999999999999863
No 59
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.34 E-value=0.14 Score=34.37 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=31.4
Q ss_pred eeeeeecceEEEeeCCccCeEEEeecCCCceeeccC--CCceeeeeeee
Q 013145 299 RAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP--SGRVYSQAFHL 345 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~~r~~~~~~v~ 345 (449)
.+|+.||... -.....+.+..||+.+++|..+++ .+|..|+++++
T Consensus 3 ~~~vfGG~~~--~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 3 KLYVFGGYDD--DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred EEEEECCcCC--CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 3566666421 112235667789999999999865 88999988764
No 60
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.29 E-value=0.019 Score=54.67 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=71.0
Q ss_pred cCCCChhHHHhhhccCCC-CceeEEEEe---eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHh
Q 013145 19 EGSPSGDEAANGNESSWS-MDCSTVVRV---KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELL 94 (449)
Q Consensus 19 e~~~~~~~l~~~~~~~~~-~~~Dv~l~~---~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l 94 (449)
+..|+...+.+++++... .-.|+++.+ +-|.|||..|+++|.+|...+..-+. ...+|+=. .+-+.+|..++
T Consensus 129 ~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~--~v~~~~f~~fl 204 (516)
T KOG0511|consen 129 ARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAH--RVILSAFSPFL 204 (516)
T ss_pred ccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhh--hhhHhhhhHHH
Confidence 445667777777776654 344777766 35899999999999998765543221 22345333 67789999999
Q ss_pred hhhccCeeecCCcchHHHHHHHHhhcCChhHHH
Q 013145 95 NFMYSNTLSTTAAPALLDVLMAADKFEVASCMR 127 (449)
Q Consensus 95 ~yiYtg~i~~~~~~~v~~ll~~A~~l~l~~L~~ 127 (449)
+|+|-..-.+- .+..-+|+.+..+|+++.|..
T Consensus 205 k~lyl~~na~~-~~qynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 205 KQLYLNTNAEW-KDQYNALLSIEVKFSKEKLSL 236 (516)
T ss_pred HHHHHhhhhhh-hhHHHHHHhhhhhccHHHhHH
Confidence 99997622222 245678888888888776654
No 61
>PF13964 Kelch_6: Kelch motif
Probab=91.98 E-value=0.21 Score=33.56 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=24.9
Q ss_pred eeeeeeecceEEEeeCCccCeEEEeecCCCceeeccC
Q 013145 298 ERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP 334 (449)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 334 (449)
..+|+.||.... ....+.+++||+.+++|..+++
T Consensus 12 ~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 12 GKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CEEEEECCCCCC---CCccccEEEEcCCCCcEEECCC
Confidence 356777765221 2337889999999999999987
No 62
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.54 E-value=0.52 Score=45.68 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCC
Q 013145 108 PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 187 (449)
Q Consensus 108 ~~v~~ll~~A~~l~l~~L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L 187 (449)
+|+..++.+|..|+++.|.+.|..|+-+ + .+ .++.- .+...|...+ +.++.. .+.|...
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr-n--A~---~lL~~-------~sFn~LSk~s-------L~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR-N--AD---QLLED-------PSFNRLSKDS-------LKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc-C--HH---hhhcC-------cchhhhhHHH-------HHHHHh-hhcccch
Confidence 7999999999999999999999999876 2 22 22211 0222222222 233333 4556555
Q ss_pred CHHHHHhcccCCCccCCCHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhhcCCC-CCCCHHHHHhh
Q 013145 188 PLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRF-PHMTCRKLKKV 252 (449)
Q Consensus 188 ~~~~l~~lL~~d~L~v~~E~~v~~av~~Wi~~~~~~~~~r~~~~~~~ll~~vRf-~~l~~~~L~~~ 252 (449)
..+.+.++.+=-.-+. .+-+..++..++-. .-.+ .+||.+||. ++++|+.+.+-
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLDA 261 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILDA 261 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHHH
Confidence 5555555554333332 23445566666543 2224 589999997 56788888763
No 63
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=88.89 E-value=0.3 Score=36.45 Aligned_cols=43 Identities=26% Similarity=0.528 Sum_probs=30.7
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhcC--CCChhhHHHHhhhc
Q 013145 108 PALLDVLMAADKFEVASCMRYCSRLLRNM--PMTPESALLYLELP 150 (449)
Q Consensus 108 ~~v~~ll~~A~~l~l~~L~~~c~~~l~~~--~l~~~n~~~i~~~a 150 (449)
+.+.+|+.||++|+|+.|.+.|++.+..+ ..+++..-.++.+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT--
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 78999999999999999999999988662 34455445555433
No 64
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=88.39 E-value=0.45 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.8
Q ss_pred eeeeeecceEEEeeCCccCeEEEeecCCCceeeccC
Q 013145 299 RAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFP 334 (449)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 334 (449)
.+|+.||... ....++++++||+.+++|..+++
T Consensus 13 ~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 13 KIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp EEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCC
Confidence 4666666422 13337889999999999998875
No 65
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=87.83 E-value=0.31 Score=46.59 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=101.1
Q ss_pred eeEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeeecCC-cchHHHHHHHHhhcCChh
Q 013145 46 KTLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKFEVAS 124 (449)
Q Consensus 46 ~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~-~~~v~~ll~~A~~l~l~~ 124 (449)
..+++|+.+|+..|+.|..+....-..+..+.+.+. .++...+..+.+++|.. ++-.. ......++.+...+-++.
T Consensus 36 ~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~ 112 (319)
T KOG1778|consen 36 DLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQ 112 (319)
T ss_pred hhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccC
Confidence 469999999999999999887665223333455665 78889999999999998 33221 245667777778889999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhccccccc
Q 013145 125 CMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVM 185 (449)
Q Consensus 125 L~~~c~~~l~~~~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~ 185 (449)
.+..|..-+..--++..|++..+..+..+ ....|..+....+...|....+ ++.+.
T Consensus 113 ~~~d~~~~~~~~~~~~r~~flvl~~~~~~----~~~~lr~a~hss~~~~~~~H~~-t~~~~ 168 (319)
T KOG1778|consen 113 PKADCDPILECGLFDKRNVFLVLQLAEHC----DFSDLRRAKHSSIMLLFDLHLQ-TEKWF 168 (319)
T ss_pred ccccCCccccchhhhhHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhc-ccCce
Confidence 99988888865137888999999988877 7888999999999888888877 54433
No 66
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.71 E-value=1.3 Score=44.42 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=34.5
Q ss_pred ccCeEEEeecCCCceeec-----cCCCceeeeeeeecCeeEEeeccc
Q 013145 315 RQQCVVYLDLKREECENL-----FPSGRVYSQAFHLGGQGFFLSAHC 356 (449)
Q Consensus 315 ~~~~~~~~d~~~~~W~~~-----~~~~r~~~~~~v~gg~iy~iGG~~ 356 (449)
+....+.+|..+-.|.+. +|.+|.-|.+.++|+++|+.||..
T Consensus 228 RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 228 RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred cccceeEEecceeecccccccCCCCCCcccccceeecceeEEeccee
Confidence 345555689988889864 558999999999999999999963
No 67
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=1 Score=36.43 Aligned_cols=83 Identities=16% Similarity=0.296 Sum_probs=57.0
Q ss_pred eEEeeeeeecccCHHHHHhhcCCCCcCccceEEEecCCCCHHHHHHHhhhhccCeee-----------------------
Q 013145 47 TLHISSPILAAKSPFFYKLFSNGMKESEQRHVALRINASEEAALMELLNFMYSNTLS----------------------- 103 (449)
Q Consensus 47 ~~~aHk~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~----------------------- 103 (449)
.|.+.+.+ |-+|--.+.|+.. +.+ -.+.++.+++...+|..+++|+-...-+
T Consensus 13 ~F~vd~~i-AerSiLikN~l~d-~~~---~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~F 87 (158)
T COG5201 13 IFRVDENI-AERSILIKNMLCD-STA---CNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFF 87 (158)
T ss_pred EEEehHHH-HHHHHHHHHHhcc-ccc---cCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHH
Confidence 45554443 4567777777654 222 2344555699999999999999432111
Q ss_pred --cCCcchHHHHHHHHhhcCChhHHHHHHHHhhc
Q 013145 104 --TTAAPALLDVLMAADKFEVASCMRYCSRLLRN 135 (449)
Q Consensus 104 --~~~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~ 135 (449)
.+. +.+.++..+|++|.++.|.++||+.+.+
T Consensus 88 m~vDq-emL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 88 MEVDQ-EMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HHhhH-HHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 112 4567889999999999999999998766
No 68
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=83.81 E-value=0.78 Score=30.61 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=11.2
Q ss_pred eeCCeeEEEcCc
Q 013145 427 MADDSLYFINGI 438 (449)
Q Consensus 427 ~~~~~iyv~GG~ 438 (449)
+++++|||+||.
T Consensus 9 ~~~~kiyv~GG~ 20 (49)
T PF07646_consen 9 VLDGKIYVFGGY 20 (49)
T ss_pred EECCEEEEECCc
Confidence 789999999996
No 69
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=82.50 E-value=6.8 Score=36.73 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=57.4
Q ss_pred eEEEEe--eeEEeeeeeeccc-CHHHHHhhcCCCCcC---ccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHH
Q 013145 40 STVVRV--KTLHISSPILAAK-SPFFYKLFSNGMKES---EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDV 113 (449)
Q Consensus 40 Dv~l~~--~~~~aHk~vLaa~-S~yF~~mf~~~~~e~---~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~l 113 (449)
-+++.+ -.|.+.+.+|-+. -.-.-+||.+++.-. ...+.++. ++++..+|+++|+|--+|.+.....-.|-+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 344444 3577777777543 223446777654322 22445553 5899999999999999999987655678899
Q ss_pred HHHHhhcCCh
Q 013145 114 LMAADKFEVA 123 (449)
Q Consensus 114 l~~A~~l~l~ 123 (449)
-+|+|+|.|+
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 9999998776
No 70
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.85 E-value=0.92 Score=43.12 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhhhhhcccccccCCCHHHHHhc---ccCCCc
Q 013145 137 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI---LSSDDL 201 (449)
Q Consensus 137 ~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~l---L~~d~L 201 (449)
.++++|++.|+--++.. .++.|.+.|+.|+..|+.+|....-++.-|+.+.+..| ++..+|
T Consensus 71 ~l~~~NvvsIliSS~FL----~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el 134 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFL----QMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEEL 134 (317)
T ss_pred cCCcCcEEEeEehhhhh----ccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccH
Confidence 69999999999777655 78999999999999999999983446666888877766 544444
No 71
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=78.49 E-value=2.3 Score=42.67 Aligned_cols=23 Identities=9% Similarity=-0.223 Sum_probs=16.7
Q ss_pred CCceeeeeeeecC--eeEEeecccc
Q 013145 335 SGRVYSQAFHLGG--QGFFLSAHCN 357 (449)
Q Consensus 335 ~~r~~~~~~v~gg--~iy~iGG~~~ 357 (449)
..|..|.++.-.+ .+|.-||.+|
T Consensus 259 ~~RgGHQMV~~~~~~CiYLYGGWdG 283 (723)
T KOG2437|consen 259 GMRGGHQMVIDVQTECVYLYGGWDG 283 (723)
T ss_pred cccCcceEEEeCCCcEEEEecCccc
Confidence 4566777777666 6888888877
No 72
>PLN02772 guanylate kinase
Probab=76.63 E-value=2.8 Score=41.42 Aligned_cols=40 Identities=3% Similarity=0.079 Sum_probs=29.3
Q ss_pred CCceeeeeeeecCeeEEeecccccC-CCCceEEEEeEecee
Q 013145 335 SGRVYSQAFHLGGQGFFLSAHCNMD-QQSSFHCFGLFLGMQ 374 (449)
Q Consensus 335 ~~r~~~~~~v~gg~iy~iGG~~~~~-~~r~~~~~~~~~g~~ 374 (449)
.++..+.++++|+++|++||.+... .....++||...+.|
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W 63 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNW 63 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcE
Confidence 5777789999999999999976532 344566666665555
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.94 E-value=8.3 Score=35.62 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=22.0
Q ss_pred eecCCCceeeccC--CCceeeeeeeecCeeEEeecccc
Q 013145 322 LDLKREECENLFP--SGRVYSQAFHLGGQGFFLSAHCN 357 (449)
Q Consensus 322 ~d~~~~~W~~~~~--~~r~~~~~~v~gg~iy~iGG~~~ 357 (449)
||+.++++..+.. +..+..++..-+|.+.++||...
T Consensus 51 yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~ 88 (243)
T PF07250_consen 51 YDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND 88 (243)
T ss_pred EecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc
Confidence 6666666665544 22223344556889999999643
No 74
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=73.49 E-value=3.6 Score=38.36 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=10.6
Q ss_pred eeCCeeEEEcCc
Q 013145 427 MADDSLYFINGI 438 (449)
Q Consensus 427 ~~~~~iyv~GG~ 438 (449)
+-+|.+|++||.
T Consensus 162 ar~D~VYilGGH 173 (337)
T PF03089_consen 162 ARNDCVYILGGH 173 (337)
T ss_pred ecCceEEEEccE
Confidence 668999999994
No 75
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=70.59 E-value=15 Score=28.41 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhcC-----------CCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhh----
Q 013145 111 LDVLMAADKFEVASCMRYCSRLLRNM-----------PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK---- 175 (449)
Q Consensus 111 ~~ll~~A~~l~l~~L~~~c~~~l~~~-----------~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~---- 175 (449)
.+++..|..++++.|.+.|.+|+..- .++.+....++.--.. ....-.++.+++.+++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l--~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL--NVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc--ccccHHHHHHHHHHHHHhCHHHHHH
Confidence 57899999999999999999999761 2223333333321110 001234677778888766643
Q ss_pred ---hhhcccccccCCCHHHHHhc
Q 013145 176 ---DMTKFQDEVMALPLAGVEAI 195 (449)
Q Consensus 176 ---~v~~~~~~f~~L~~~~l~~l 195 (449)
.+.+ .=.|..|+.+.+.+.
T Consensus 80 ~~~~Ll~-~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 80 HLKELLS-CIRFPLLSPEELQNV 101 (103)
T ss_dssp THHHHHC-CCHHHCT-HHHHHHC
T ss_pred HHHHHHH-hCCcccCCHHHHHHH
Confidence 2222 334445555555443
No 76
>PLN02772 guanylate kinase
Probab=68.96 E-value=9.6 Score=37.80 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=33.6
Q ss_pred cCeEEEeecCCCceeecc-----CCCceeeeeeeec-CeeEEeeccc
Q 013145 316 QQCVVYLDLKREECENLF-----PSGRVYSQAFHLG-GQGFFLSAHC 356 (449)
Q Consensus 316 ~~~~~~~d~~~~~W~~~~-----~~~r~~~~~~v~g-g~iy~iGG~~ 356 (449)
.+.+.+||+.+..|.... |.+|-.|++++++ +.|.++++..
T Consensus 50 ~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 50 SIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred cceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 567889999999999753 4889999999995 5899998643
No 77
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=67.85 E-value=29 Score=29.75 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=71.2
Q ss_pred cCCCCceeEEEEee--eEEeeeeeecccCHHHHHhhcCCCCcC----ccceEEEecCCCCHHHHHHHhhhhccCeeecCC
Q 013145 33 SSWSMDCSTVVRVK--TLHISSPILAAKSPFFYKLFSNGMKES----EQRHVALRINASEEAALMELLNFMYSNTLSTTA 106 (449)
Q Consensus 33 ~~~~~~~Dv~l~~~--~~~aHk~vLaa~S~yF~~mf~~~~~e~----~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~ 106 (449)
+..+...=|-+.++ -|.--|.-|..-+.-|-..|-..-.+. ...--.+- |-+|.-|.-+|+|+-.|++-++.
T Consensus 15 ~~~g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklvl~~ 92 (210)
T KOG2715|consen 15 NGNGVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLVLNK 92 (210)
T ss_pred cCCCceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhhhhh
Confidence 44454455555553 477789999888866665554422211 11112333 77899999999999999999886
Q ss_pred cchHHHHHHHHhhcCChhHHHHHHHHhhc
Q 013145 107 APALLDVLMAADKFEVASCMRYCSRLLRN 135 (449)
Q Consensus 107 ~~~v~~ll~~A~~l~l~~L~~~c~~~l~~ 135 (449)
-.-..+|.-|.+|.++.|+++..+.|.+
T Consensus 93 -l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 93 -LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred -hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 4567899999999999999988888766
No 78
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=58.95 E-value=36 Score=30.86 Aligned_cols=84 Identities=8% Similarity=0.144 Sum_probs=57.3
Q ss_pred eeEEeeeee--ecccCHHHHHhhcCCCC--cCccceEEEecCCCCHHHHHHHhhhhccCeeecCC-cchHHHHHHHHhhc
Q 013145 46 KTLHISSPI--LAAKSPFFYKLFSNGMK--ESEQRHVALRINASEEAALMELLNFMYSNTLSTTA-APALLDVLMAADKF 120 (449)
Q Consensus 46 ~~~~aHk~v--Laa~S~yF~~mf~~~~~--e~~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~-~~~v~~ll~~A~~l 120 (449)
+.++.|+.- .+-.-....+||++... ...+....| +=+-..|+.+|+|+-|....+.. ..++..|..-|++|
T Consensus 17 G~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~ 93 (221)
T KOG2723|consen 17 GAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFF 93 (221)
T ss_pred CeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHH
Confidence 456666533 34445567788886332 222344566 56778999999999996555543 25688999999999
Q ss_pred CChhHHHHHHHH
Q 013145 121 EVASCMRYCSRL 132 (449)
Q Consensus 121 ~l~~L~~~c~~~ 132 (449)
+++.+...+.+-
T Consensus 94 ~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 94 QLEAPVTYLLNS 105 (221)
T ss_pred ccccHHHHHhcc
Confidence 999887765543
No 79
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=56.40 E-value=15 Score=34.05 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=24.5
Q ss_pred EEecccccCCCcceec-c--------Ccee---------------eeCCeeEEEcCc
Q 013145 406 TFTGGKAVGYRNLFAI-P--------WTSF---------------MADDSLYFINGI 438 (449)
Q Consensus 406 yv~GG~~~~~~~ve~Y-p--------W~~~---------------~~~~~iyv~GG~ 438 (449)
.++||..++.+.+-.| | |... .-||++.|+||.
T Consensus 81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGS 137 (243)
T ss_pred EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCc
Confidence 7778887776677667 6 5443 348999999996
No 80
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=47.49 E-value=1.2e+02 Score=28.71 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=25.8
Q ss_pred EeecCCCceee--ccC--CCceeeeeeeecCeeEEeeccc
Q 013145 321 YLDLKREECEN--LFP--SGRVYSQAFHLGGQGFFLSAHC 356 (449)
Q Consensus 321 ~~d~~~~~W~~--~~~--~~r~~~~~~v~gg~iy~iGG~~ 356 (449)
..|....-++. ++. ++..+|-+.+-++.+|++||..
T Consensus 135 LiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 135 LIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEeccccccccccchhhcCCeEEEEEEecCceEEEEccEE
Confidence 35665554444 333 7888888888889999999974
No 81
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=41.53 E-value=52 Score=33.48 Aligned_cols=43 Identities=9% Similarity=-0.069 Sum_probs=32.1
Q ss_pred CccCeEEEeecCCCceeeccC--------CCceeeeeeeecCe--eEEeecccc
Q 013145 314 PRQQCVVYLDLKREECENLFP--------SGRVYSQAFHLGGQ--GFFLSAHCN 357 (449)
Q Consensus 314 ~~~~~~~~~d~~~~~W~~~~~--------~~r~~~~~~v~gg~--iy~iGG~~~ 357 (449)
.+++-| .||..++.|..+.- ....-|+++|.+.+ +||.||...
T Consensus 344 ~RsDfW-~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 344 LRSDFW-RFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred cccceE-EEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 334444 59999999997743 44556899999887 999999754
No 82
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=39.30 E-value=74 Score=32.22 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=31.5
Q ss_pred CCChhhHHHHhhhcccccchhchHHHHHHHHHHHHHhhh
Q 013145 137 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK 175 (449)
Q Consensus 137 ~l~~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~f~ 175 (449)
.+.++||+.++..|++| ..+.|.+.|.+||..+..
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~ 218 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLM 218 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcC
Confidence 58899999999999988 899999999999987754
No 83
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=29.32 E-value=54 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.4
Q ss_pred CC-hhhHHHHhhhcccccchhchHHHHHHHHHHHHHh
Q 013145 138 MT-PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 173 (449)
Q Consensus 138 l~-~~n~~~i~~~a~~~~~~~~~~~L~~~~~~~i~~~ 173 (449)
++ .+++..++.+|..+ +.+.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 44 88999999999887 9999999999999876
No 84
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=20.18 E-value=1.6e+02 Score=29.94 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=38.3
Q ss_pred ccceEEEecCCCCHHHHHHHhhhhccCeeecCCcchHHHHHHHHhhcCChhHH-HHHH
Q 013145 74 EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCM-RYCS 130 (449)
Q Consensus 74 ~~~~i~l~~~~v~~~~f~~~l~yiYtg~i~~~~~~~v~~ll~~A~~l~l~~L~-~~c~ 130 (449)
..++.-+ |=+|.+|..+++|-+||++....+--.....+--++++|++.. +.||
T Consensus 79 ~~~EyfF---DR~P~~F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~~~le~CC 133 (477)
T KOG3713|consen 79 VTNEYFF---DRHPGAFAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDEAHLESCC 133 (477)
T ss_pred ccCeeee---ccChHHHHHHHHHHhcCeeccccccchHHHHHHHHHhCCChhhhhHHh
Confidence 3456666 6789999999999999999876533344555667788886433 3444
Done!