BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013147
(449 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 290/443 (65%), Positives = 342/443 (77%), Gaps = 24/443 (5%)
Query: 28 HIFKPFSYNKYPFQRISSMVDVLCK------AFGPCYGLKRFSIEGRLWIHSAPLRHYIE 81
++F PF + + R +S+ ++CK AF P Y L+ I G WIH P I+
Sbjct: 19 YLFTPFFSDSLTY-RTTSLFHIICKVFSQAPAFRPVYVLEGPHIGGHRWIHFGPTLTDID 77
Query: 82 KVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILY 141
K E S S+ +G+G AKVKRKKLKGKRAVVRWLK FR+KKKKEYERMTAEEK+LY
Sbjct: 78 KDGEPPPLSGQSTMVEGSGCAKVKRKKLKGKRAVVRWLKFFRWKKKKEYERMTAEEKLLY 137
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 201
KL+KA+KKEER V+ LKKIEP +SSE THDPEILTPEEHF+FLKMG KCKNYVPVGRRGI
Sbjct: 138 KLKKAQKKEERYVQALKKIEPVDSSETTHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGI 197
Query: 202 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGK 261
YQGVILNMHLHWKKHQT++V+VKTFS EEVKEIAAELARLTGGIVL+IHEENTIIMYRGK
Sbjct: 198 YQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLDIHEENTIIMYRGK 257
Query: 262 NYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRS 321
NY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+ YIP+LEQ+LELL+ Q+ ++E S
Sbjct: 258 NYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRNYIPRLEQDLELLKVQSMGKAECGS 317
Query: 322 DAAEDVQNTELDKPDFGSIPSMM---------------ECSENDPTTESLMASDSEDLSD 366
+AE+ T+ D + G +PS ECSE + + M SDSEDLSD
Sbjct: 318 ASAEETLYTD-DGAESGGVPSTPLENSEKLKKITDGQEECSEEESPMDLGMLSDSEDLSD 376
Query: 367 IFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED 426
IFETDS+TETE+K + RPLYL++F KFP+Q +EE EDFEEHLRQ+S+DSR +S KD D
Sbjct: 377 IFETDSDTETEDKVK-RPLYLEEFKKFPIQGNEEPEDFEEHLRQLSVDSRKVESSEKDSD 435
Query: 427 SSHFDEVDKMFLRAASLLKKQKR 449
FDEVD++FLRAASLLKK+KR
Sbjct: 436 IPSFDEVDRLFLRAASLLKKKKR 458
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/422 (65%), Positives = 333/422 (78%), Gaps = 31/422 (7%)
Query: 50 LCKAFG--PCYGLKR--FSIEGRLWIHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVK 105
+CK G P Y +K + G LWIHS P + ++KVVE E+ E +++ KVK
Sbjct: 1 MCKVLGQRPVYNVKGHLVPLVGHLWIHSCPSLNNVDKVVEPTENFEKTAAVFSGSDVKVK 60
Query: 106 RKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKES 165
R KLKGKRAVVRWLK FR+KKKKEYERMTAEEKILYKLRKA++KEER V+ LKKIEPKES
Sbjct: 61 RPKLKGKRAVVRWLKFFRWKKKKEYERMTAEEKILYKLRKAQRKEERFVQALKKIEPKES 120
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE THDPEILTPEEHF+FLKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV+VKT
Sbjct: 121 SEATHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKT 180
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDK 285
F+ EEVKEIAAELAR TGGIVL+IHEENTIIMYRGKNY+QPPTEIMSPR+TLSRKKALDK
Sbjct: 181 FTPEEVKEIAAELARFTGGIVLDIHEENTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDK 240
Query: 286 SKYRDGLRAVKKYIPKLEQELELLRAQAETRS-----ENRSDAAEDVQNTE-----LDKP 335
SK RDGLRA+++YIP+L+Q+LELL A+A ++ E+RS +++ ++N+E +D+
Sbjct: 241 SKCRDGLRALRRYIPRLQQDLELLHARAGGKTDIDGAESRSISSKQLENSEKLKEIIDRQ 300
Query: 336 DFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPV 395
D G SE+ P T+ +ASDSEDLSDIFETDS+ +TEE ++ RPLYL++F+KF V
Sbjct: 301 DEG--------SEDGPDTDLGIASDSEDLSDIFETDSDADTEETSK-RPLYLEEFEKFSV 351
Query: 396 QNDEEHEDFEEHLRQISIDSRNAKSLGK--------DEDSSHFDEVDKMFLRAASLLKKQ 447
+ D E EDFEEHLRQIS+ S+ + GK D DS FDEVD+MFLRAASLLK++
Sbjct: 352 EADGEPEDFEEHLRQISLGSKKGVTSGKDVDIPTGVDVDSPSFDEVDRMFLRAASLLKRK 411
Query: 448 KR 449
KR
Sbjct: 412 KR 413
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/399 (69%), Positives = 323/399 (80%), Gaps = 17/399 (4%)
Query: 67 GRLWIHSAPLRHYIE-KVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYK 125
R +H+ L H +E V E ++ +S++A G KVKRKKLKGKRAVVRWLK FR+K
Sbjct: 4 ARFLVHNLLLGHSMEYGVAEPEKLPVDSTTAAGTVETKVKRKKLKGKRAVVRWLKFFRWK 63
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK 185
KKKEYERMTAEEKILYKLRKAR+KEER+ E L KIEPKESSE THDPEILTPEEHF+FLK
Sbjct: 64 KKKEYERMTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLK 123
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
MG KCKNYVP+GRRGIYQGVILNMHLHWKKHQTL+V+VKTFS EEVKEIA ELARLTGGI
Sbjct: 124 MGLKCKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGI 183
Query: 246 VLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQE 305
VL+IHEENTIIMYRGKNY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+KYIP+LE +
Sbjct: 184 VLDIHEENTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGD 243
Query: 306 LELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMM---------------ECSEND 350
LELL+AQA+ ++EN+++A ED QN +D + I ++ E SE +
Sbjct: 244 LELLQAQAKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEEE 303
Query: 351 PTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQ 410
T+S S SE LSDIFE+DS+T+T+EKAE + LYL++F+KFPV++D E EDFEEHLRQ
Sbjct: 304 SLTDSGTESCSEALSDIFESDSDTDTKEKAE-QLLYLNEFEKFPVESDGEPEDFEEHLRQ 362
Query: 411 ISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 449
IS DSR AKSL KD D DEVD+MFLRAASLLKK++R
Sbjct: 363 ISADSRKAKSLEKDADLPQLDEVDQMFLRAASLLKKKRR 401
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/383 (68%), Positives = 311/383 (81%), Gaps = 12/383 (3%)
Query: 67 GRLWIHSAPLRHYIEKVVEKQESSENSSSA--DGAGVAKVKRKKLKGKRAVVRWLKHFRY 124
G HS P + +KVVE+Q+ S+ +SSA DG G AKVKR KLKGKRAVVRWLK FR+
Sbjct: 8 GNASFHSCPFLKFNDKVVEQQQDSQKASSANVDGDGNAKVKRNKLKGKRAVVRWLKFFRF 67
Query: 125 KKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFL 184
KKKKEYERMTAEEKILYKL KARKKEER+ E LKKIEP ESSE THDPEILTPEEHF+FL
Sbjct: 68 KKKKEYERMTAEEKILYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFL 127
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
KMG K KNYVPVGRRGIYQGVILNMHLHWKKHQTLKV+VKTFSAEEVKEIA ELARL+GG
Sbjct: 128 KMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGG 187
Query: 245 IVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQ 304
IVL+IHE+NTIIMYRGKNY+QPPTEIMSPR++LSRKKALDKSKYRD LRAV+++IP+LEQ
Sbjct: 188 IVLDIHEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRHIPRLEQ 247
Query: 305 ELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDL 364
ELE+LRAQ ++ +E+ +DAAE +QN + + C+E++ S + SDS+ L
Sbjct: 248 ELEILRAQFKSSAESNTDAAEAIQNNR------ERMNDNIGCTEDETDMNSELDSDSDKL 301
Query: 365 SDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKD 424
SDIFETDS+TE K E +PLYLD+FD FP Q+D E DFEEHLRQ+S+ S+N + K+
Sbjct: 302 SDIFETDSDTENFIKEE-KPLYLDEFDNFPEQSDGEMNDFEEHLRQMSLKSKN---MEKE 357
Query: 425 EDSSHFDEVDKMFLRAASLLKKQ 447
++ DEVDK+FL+A S LKK+
Sbjct: 358 DNLPKLDEVDKIFLQATSFLKKK 380
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/385 (68%), Positives = 312/385 (81%), Gaps = 22/385 (5%)
Query: 81 EKVVEKQ-ESSENSSSA--DGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEE 137
+KVVE+Q + S+ +SSA DG G AKVKR KLKGKRAVVRWLK FR+KKKKEYERMTAEE
Sbjct: 1 DKVVEQQHQDSQKASSANVDGDGNAKVKRNKLKGKRAVVRWLKFFRFKKKKEYERMTAEE 60
Query: 138 KILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVG 197
K LYKL KARKKEER+ E LKKIEP ESSE THDPEILTPEEHF+FLKMG K KNYVPVG
Sbjct: 61 KNLYKLLKARKKEERLCEALKKIEPAESSETTHDPEILTPEEHFFFLKMGLKSKNYVPVG 120
Query: 198 RRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIM 257
RRGIYQGVILNMHLHWKKHQTLKV+VKTFSAEEVKEIAAELARL+GGIVL+IHE+NTIIM
Sbjct: 121 RRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHEDNTIIM 180
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRS 317
YRGKNY+QPPTEIMSPR++LSRKKALDKSKYRD LRAV++YIP+LEQELE+LRAQ ++ +
Sbjct: 181 YRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDALRAVRRYIPRLEQELEILRAQFKSSA 240
Query: 318 ENRSDAAEDVQNTELDKPDFGSIPS-----------MMEC----SENDPTTESLMASDSE 362
E+ +DAAE +QN+ + + GSI + MM +E++ S + SDS+
Sbjct: 241 ESNTDAAEAIQNSGRESIESGSISNFQLQNSYKDREMMNVNIGSTEDETDMNSELDSDSD 300
Query: 363 DLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLG 422
LSDIFETDS+TE K E +PLYLD+FD FP Q+D E DFEEH+RQ+S+ S+N +
Sbjct: 301 KLSDIFETDSDTENFVKEE-KPLYLDEFDNFPEQSDGEMNDFEEHMRQMSLKSKN---ME 356
Query: 423 KDEDSSHFDEVDKMFLRAASLLKKQ 447
KD++ DEVDK+FL+A S LKK+
Sbjct: 357 KDDNLPKLDEVDKIFLQATSFLKKK 381
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/332 (71%), Positives = 276/332 (83%), Gaps = 16/332 (4%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MTAEEKILYKLRKAR+KEER+ E L KIEPKESSE THDPEILTPEEHF+FLKMG KCKN
Sbjct: 1 MTAEEKILYKLRKARRKEERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKN 60
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVP+GRRGIYQGVILNMHLHWKKHQTL+V+VKTFS EEVKEIA ELARLTGGIVL+IHEE
Sbjct: 61 YVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDIHEE 120
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
NTIIMYRGKNY+QPPTEIMSPRITLSRKKALDKSKYRDGLRAV+KYIP+LE +LELL+AQ
Sbjct: 121 NTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKSKYRDGLRAVRKYIPRLEGDLELLQAQ 180
Query: 313 AETRSENRSDAAEDVQNTELDKPDFGSIPSMM---------------ECSENDPTTESLM 357
A+ ++EN+++A ED QN +D + I ++ E SE + T+S
Sbjct: 181 AKMQAENKTEAVEDFQNANIDSINSQGISNLQPENSDKLRELLAGNNESSEEESLTDSGT 240
Query: 358 ASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRN 417
S SE LSDIFE+DS+T+T+EKAE + LYL++F+KFPV++D E EDFEEHLRQIS DSR
Sbjct: 241 ESCSEALSDIFESDSDTDTKEKAE-QLLYLNEFEKFPVESDGEPEDFEEHLRQISADSRK 299
Query: 418 AKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 449
AKSL KD D DEVD+MFLRAASLLKK++R
Sbjct: 300 AKSLEKDADLPQLDEVDQMFLRAASLLKKKRR 331
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/422 (59%), Positives = 316/422 (74%), Gaps = 35/422 (8%)
Query: 53 AFGPCYGLKRFSIEGRLWIHSAPLRHYIEKVVEKQESSENSSS---ADGAGVAKVKRKKL 109
+F YGL S+ G WIHS K VE E SE S+ DG+G+ + ++K+
Sbjct: 89 SFNGVYGLT--SVVGYRWIHST-------KSVEPLEKSEGKSAIGFTDGSGIEEEEKKEK 139
Query: 110 KGK------RAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPK 163
K + RAVVRWLK FR+KKKKEYERMT+EEKIL+K+ KARKKE+R+VE L+KIEP
Sbjct: 140 KTRKKLKGKRAVVRWLKLFRWKKKKEYERMTSEEKILFKMNKARKKEKRLVEALEKIEPA 199
Query: 164 ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIV 223
+SS+ THDPEILTPEEHFYFLKMG K KNYVPVGRRGIYQGVILNMHLHWKKHQT+KV+V
Sbjct: 200 DSSDTTHDPEILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVV 259
Query: 224 KTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKAL 283
KTFS EEVKEIAAELARLTGG+VL+IHEE+TIIMYRGKNY+QPPTEIMSPR++LSRKKAL
Sbjct: 260 KTFSPEEVKEIAAELARLTGGLVLDIHEEDTIIMYRGKNYSQPPTEIMSPRVSLSRKKAL 319
Query: 284 DKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSM 343
DKSKYRDGLRAV+K+IPKLEQEL L++QA+ ++ ++ E +Q T D +I S+
Sbjct: 320 DKSKYRDGLRAVRKHIPKLEQELRFLQSQAKLNCKSNGESVEHMQETVDDTNKSKAISSL 379
Query: 344 M----------------ECSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYL 387
+ S++ ++ M+SDSEDLSD+FETD ++E +EK E +PL+L
Sbjct: 380 NLENLDDSSNAMRSVSKDWSDDSSPIDTGMSSDSEDLSDMFETDIDSEADEKME-KPLFL 438
Query: 388 DQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 447
+F+ F + ++E ED + LRQIS+DS+ AK L D +S FDEVD++FLR+ASLLKK+
Sbjct: 439 KEFENFAAETEDEIEDLSDQLRQISMDSKQAKILENDVNSPEFDEVDRLFLRSASLLKKK 498
Query: 448 KR 449
+R
Sbjct: 499 RR 500
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 272/450 (60%), Positives = 331/450 (73%), Gaps = 39/450 (8%)
Query: 23 LLSKFHIFKPFSYNKYPFQRISSMVDVLCKAFGP---CYGLKRFSIE-GRLWIHSAP-LR 77
LL+KF S + + +S+ V+CK + + L S G L HS P L+
Sbjct: 10 LLNKFQFLS--SSTTFLLRHKTSLNYVICKVYAQEHHQFKLPSTSTRVGCLSFHSTPFLK 67
Query: 78 HYIEKVVEKQESSENSSSADGAGVAKV-KRKKLKGKRAVVRWLKHFRYKKKKEYERMTAE 136
+KVVE+ + S+ G KV RKKLKGKRAVVRWLK FR+KKKKE++RMT E
Sbjct: 68 CNHDKVVEQPQDSD--------GDVKVPARKKLKGKRAVVRWLKFFRFKKKKEFQRMTTE 119
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
E+ILYKL KARKKEER+ E LKKIEP ESSE HDPEILTPEEHF+FLKMG K KNYVPV
Sbjct: 120 ERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPV 179
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII 256
GRRGIYQGVILNMHLHWKKHQTL+V+VKTFSAEEVKEIA ELARLTGGIVL IHEE+TII
Sbjct: 180 GRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDTII 239
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETR 316
MYRGKNY+QPPTEIMSPR+TL RKKALDKSKYRDGLRAV++YIPKLEQELE+LRAQ ++
Sbjct: 240 MYRGKNYSQPPTEIMSPRVTLPRKKALDKSKYRDGLRAVRRYIPKLEQELEILRAQFQST 299
Query: 317 SENRSDAAEDVQ-------------NTELDKPDFGSIPSMME----CSENDPTTESLMAS 359
+E+ ++AAE +Q N +L+K D + +M CSE++ +S + S
Sbjct: 300 AESNTEAAEGIQISDKVSVEPSSVSNLQLEKLD--KVGAMFNDNNSCSEDEAHMDSDLDS 357
Query: 360 DSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAK 419
S+ LSDIFETDS+TE K E +PLYLD+F+ FP Q+D + +DFEEHL+QIS +S+N
Sbjct: 358 YSDKLSDIFETDSDTEDLVKEE-KPLYLDEFNNFPEQSDGDTDDFEEHLQQISYNSKN-- 414
Query: 420 SLGKDEDSSHFDEVDKMFLRAASLLKKQKR 449
+ KD D FDEVD++FLRAAS LKK+++
Sbjct: 415 -MEKDADLPKFDEVDQIFLRAASFLKKKRK 443
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 277/468 (59%), Positives = 329/468 (70%), Gaps = 54/468 (11%)
Query: 4 RVLVSSASMALR-KSPQFKILLSKFHIFKPFSYNKYPFQRISSMVDVLCKAFGPCYGLKR 62
RV S+ASM LR KS Q L S +F F+ R S +++CK L +
Sbjct: 680 RVSTSAASMLLRRKSRQLGFLASSSPLFSSFN----SMNRTISSCNIVCKV------LHK 729
Query: 63 FSIEGRLW---------IHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKR 113
S+ +W HS P R + + K SENSSS DG K+KRKKLKGKR
Sbjct: 730 ESLTRPMWNVSFLRSSSFHSTPARETGDDDISK---SENSSSQDGDSCTKLKRKKLKGKR 786
Query: 114 AVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPE 173
AVVRWLK FR+KKKKE+ERMT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPE
Sbjct: 787 AVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPE 846
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
ILTPEEHFY+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKE
Sbjct: 847 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 906
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 293
IA ELARLTGGIVL++HE NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LR
Sbjct: 907 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALR 966
Query: 294 AVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDP 351
AV+KYIP+LEQEL+LL+AQAET+ + + +D Q + EL K ++E SE
Sbjct: 967 AVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKK--------IIERSEECL 1018
Query: 352 TTESL-------MASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDF 404
E +A+DS DLSDIFETDSE E + K E RPL+L++F+KFP N+ E EDF
Sbjct: 1019 EDEQEEDEAGLELATDS-DLSDIFETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDF 1075
Query: 405 EEHLRQISIDSRNAKSLGKDED---SSHFDEVDKMFLRAASLLKKQKR 449
D AKS G++ D S +FDEVDKMFLRAA LLKK++R
Sbjct: 1076 G--------DLGKAKSEGEENDDDKSPNFDEVDKMFLRAAFLLKKKRR 1115
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 277/461 (60%), Positives = 328/461 (71%), Gaps = 40/461 (8%)
Query: 4 RVLVSSASMALR-KSPQFKILLSKFHIFKPFSYNKYPFQRISSMVDVLCKAFGPCYGLKR 62
RV S+ASM LR KS Q L S +F F+ R S +++CK L +
Sbjct: 9 RVSTSAASMLLRRKSRQLGFLASSSPLFSSFN----SMNRTISSCNIVCKV------LHK 58
Query: 63 FSIEGRLW---------IHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKR 113
S+ +W HS P R + + K SENSSS DG K+KRKKLKGKR
Sbjct: 59 ESLTRPMWNVSFLRSSSFHSTPARETGDDDISK---SENSSSQDGDSCTKLKRKKLKGKR 115
Query: 114 AVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPE 173
AVVRWLK FR+KKKKE+ERMT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPE
Sbjct: 116 AVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPE 175
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
ILTPEEHFY+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKE
Sbjct: 176 ILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKE 235
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 293
IA ELARLTGGIVL++HE NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LR
Sbjct: 236 IAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALR 295
Query: 294 AVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDP 351
AV+KYIP+LEQEL+LL+AQAET+ + + +D Q + EL K S + + E D
Sbjct: 296 AVRKYIPRLEQELQLLQAQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDE 355
Query: 352 TTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQI 411
L A+DS DLSDIFETDSE E + K E RPL+L++F+KFP N+ E EDF
Sbjct: 356 AGLEL-ATDS-DLSDIFETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG------ 405
Query: 412 SIDSRNAKSLGKDED---SSHFDEVDKMFLRAASLLKKQKR 449
D AKS G++ D S +FDEVDKMFLRAA LLKK++R
Sbjct: 406 --DLGKAKSEGEENDDDKSPNFDEVDKMFLRAAFLLKKKRR 444
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/452 (59%), Positives = 326/452 (72%), Gaps = 37/452 (8%)
Query: 10 ASMALR-KSPQFKILLSKFHIFKPFSYNKYPFQRISSMVDVLCKAF------GPCYGLKR 62
ASM LR KS + L S +F + P ISS +++CK GP + +
Sbjct: 629 ASMILRRKSRKLGFLASSSPLFSSLNSKNRP---ISSSGNIVCKVLLKESLNGPMWNV-- 683
Query: 63 FSIEGRLWIHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHF 122
S W HS + + + + SENSSS DG K+KRKKLKGKRAVVRWLK F
Sbjct: 684 -SFLRSSWFHS----NSVPETGDCLSKSENSSSQDGGSSTKLKRKKLKGKRAVVRWLKFF 738
Query: 123 RYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFY 182
R+KKKKE+ERMTAEEKIL KL KARKKEER++E +KK+EP ES+E THDPEILTPEEHFY
Sbjct: 739 RWKKKKEFERMTAEEKILNKLTKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFY 798
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLT 242
+LKMG KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EV EIA ELARLT
Sbjct: 799 YLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLT 858
Query: 243 GGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKL 302
GGIVL++HE NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+L
Sbjct: 859 GGIVLDVHEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRL 918
Query: 303 EQELELLRAQAETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESLMASD 360
EQEL+LL+AQAET+ E + +D+Q + EL K S + + E + S +A+D
Sbjct: 919 EQELQLLQAQAETKREYLNVKVDDIQERSDELKKIIERSEECLED-EEEEEDAGSELATD 977
Query: 361 SEDLSDIFETDSETETEEKAELRPLYLDQFDKFP-VQNDEEHEDFEEHLRQISIDSRNAK 419
S DLSDIFETDSE E E+ +RPL+L++F+KFP + N+ E EDF + AK
Sbjct: 978 S-DLSDIFETDSELEDEKT--VRPLFLEEFEKFPAINNNREDEDFGK-----------AK 1023
Query: 420 SLGKDED--SSHFDEVDKMFLRAASLLKKQKR 449
S G++ D S +FDEVDKMFLRAASLLKK++R
Sbjct: 1024 SEGEENDDKSPNFDEVDKMFLRAASLLKKKRR 1055
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 272/479 (56%), Positives = 331/479 (69%), Gaps = 68/479 (14%)
Query: 23 LLSKFHIFKPFSYNKYPFQRISSMVDVLCKAFGP---CYGLKRFSIE-GRLWIHSAP-LR 77
LL+KF S + + +S+ V+CK + + L S G L HS P L+
Sbjct: 10 LLNKFQFLS--SSTTFLLRHKTSLNYVICKVYAQEHHQFKLPSTSTRVGCLSFHSTPFLK 67
Query: 78 HYIEKVVEKQESSENSSSADGAGVAKV-KRKKLKGKRAVVRWLKHFRYKKKKEYERMTAE 136
+KVVE+ + S+ G KV RKKLKGKRAVVRWLK FR+KKKKE++RMT E
Sbjct: 68 CNHDKVVEQPQDSD--------GDVKVPARKKLKGKRAVVRWLKFFRFKKKKEFQRMTTE 119
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
E+ILYKL KARKKEER+ E LKKIEP ESSE HDPEILTPEEHF+FLKMG K KNYVPV
Sbjct: 120 ERILYKLLKARKKEERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPV 179
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII 256
GRRGIYQGVILNMHLHWKKHQTL+V+VKTFSAEEVKEIA ELARLTGGIVL IHEE+TII
Sbjct: 180 GRRGIYQGVILNMHLHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGIHEEDTII 239
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKK-----------------------------ALDKSK 287
MYRGKNY+QPPTEIMSPR+TL RKK ALDKSK
Sbjct: 240 MYRGKNYSQPPTEIMSPRVTLPRKKVLHVPKDCLHHTIKDCFTFLFAYFPSLISALDKSK 299
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQ-------------NTELDK 334
YRDGLRAV++YIPKLEQELE+LRAQ ++ +E+ ++AAE +Q N +L+K
Sbjct: 300 YRDGLRAVRRYIPKLEQELEILRAQFQSTAESNTEAAEGIQISDKVSVEPSSVSNLQLEK 359
Query: 335 PDFGSIPSMME----CSENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQF 390
D + +M CSE++ +S + S S+ LSDIFETDS+TE K E +PLYLD+F
Sbjct: 360 LD--KVGAMFNDNNSCSEDEAHMDSDLDSYSDKLSDIFETDSDTEDLVKEE-KPLYLDEF 416
Query: 391 DKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQKR 449
+ FP Q+D + +DFEEHL+QIS +S+N + KD D FDEVD++FLRAAS LKK+++
Sbjct: 417 NNFPEQSDGDTDDFEEHLQQISYNSKN---MEKDADLPKFDEVDQIFLRAASFLKKKRK 472
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/429 (56%), Positives = 301/429 (70%), Gaps = 31/429 (7%)
Query: 49 VLCKAFGPCYGLKRFSIEGRLWIHSA-PLRHYIEKVVEKQESSENSSSADGAGVAKVKRK 107
V + G G + ++++ IH++ P+ + E Q+ E+ + D +G K KRK
Sbjct: 52 VFHRDVGFFSGWQSYNLQIYCCIHTSRPVNSQNHTIAEPQQKQEDVALVDESGRPKAKRK 111
Query: 108 KLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSE 167
KLKG+RAV R+LK R+KKK+E++RMTAEEKILYKL+ AR KEER+V L KIEP + SE
Sbjct: 112 KLKGRRAVTRFLKSLRWKKKREFQRMTAEEKILYKLKLARNKEERLVAALTKIEPDDPSE 171
Query: 168 MTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS 227
THDPE+LTPEEHFYFLKMG+K KNYVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+
Sbjct: 172 PTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFT 231
Query: 228 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
+EVKEIA+ELARL+GGIVL+I E NTIIMYRGKNYAQPP EIMSP++TL RKKALDKSK
Sbjct: 232 PDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSK 291
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAE-TRSENRSDAAEDVQNTELDKPDFGSIPSMMEC 346
YR+ LRA+++YIP+LEQEL L AQ + R +AAED+ D + S C
Sbjct: 292 YRERLRALRRYIPRLEQELVDLHAQMKLARDYKGQNAAEDITCIS-DSVNSTSAKEYSSC 350
Query: 347 S----------------------EN-----DPTTESLMASDSEDLSDIFETDSETETEEK 379
S EN D +ES+ S+SEDLSDIFETDSE E ++
Sbjct: 351 SVRKRSVSDLLSESIEGSGRLEDENYEVSADSASESITYSESEDLSDIFETDSEEEQVQE 410
Query: 380 AELRPLYLDQFDKFPVQ-NDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFL 438
++ +PLYLD+ DKFP + ND E +DFEEHLR+I+ S S K+ S DE+DK+FL
Sbjct: 411 SKEQPLYLDKLDKFPSENNDNEPDDFEEHLRKIASLSDRTDSSAKELKVSELDEIDKIFL 470
Query: 439 RAASLLKKQ 447
RA+SLLKK+
Sbjct: 471 RASSLLKKR 479
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/416 (58%), Positives = 292/416 (70%), Gaps = 30/416 (7%)
Query: 61 KRFSIEGRLWIH-SAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWL 119
+ ++I+ +H S P+ + + +S S D +G KVKR KLKGKRAV R+L
Sbjct: 71 RSYNIQTYRCVHTSQPVNSQNQSMAMDPQSPGAMVSVDDSGKPKVKRPKLKGKRAVTRFL 130
Query: 120 KHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEE 179
K R+KKKKE +RMTAEEKILYKL+ ARKKEER++ LKKIEP + SE THDPE+LTPEE
Sbjct: 131 KSLRWKKKKELQRMTAEEKILYKLKLARKKEERLLAALKKIEPNDPSEPTHDPEVLTPEE 190
Query: 180 HFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELA 239
HFYFLKMG+K KNYVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA+ELA
Sbjct: 191 HFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIASELA 250
Query: 240 RLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 299
L+GGIVL I E NTIIMYRGKNYAQPP EIMSP+I L RKKALDKSKYRD LRA+++YI
Sbjct: 251 ILSGGIVLSIQEGNTIIMYRGKNYAQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRYI 310
Query: 300 PKLEQELELLRAQAETRSENRSDAA-------EDVQNTELDKPDFGS----------IPS 342
P+LEQELE L AQ + +R +A D N+ K D S +
Sbjct: 311 PRLEQELEDLHAQMKLSGGHRGQSAVKDVTFVSDCTNSMSAKNDSSSSIHKRSVSDLLSE 370
Query: 343 MMECSE----------NDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDK 392
+E SE +D +ES+ S+SEDLSDIFETDSE + E+ E RPLYLD DK
Sbjct: 371 NIERSEMLEDGNTEDDDDSASESITCSESEDLSDIFETDSEEQVEDTKE-RPLYLDSLDK 429
Query: 393 F-PVQNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 447
F P ND E +DFEEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 430 FLPESNDNEPDDFEEHLRKIASLSDKTDSPAKELKISELDEIDKIFLRASSLLKKR 485
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 297/384 (77%), Gaps = 20/384 (5%)
Query: 71 IHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEY 130
HS P R + + K SENSSS DG K+KRKKLKGKRAVVRWLK FR+KKKKE+
Sbjct: 12 FHSTPARETGDDDISK---SENSSSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEF 68
Query: 131 ERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKC 190
ERMT+EEKIL KLRKARKKEER++E +KK+EP ES+E THDPEILTPEEHFY+LKMG KC
Sbjct: 69 ERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKC 128
Query: 191 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH 250
KNYVPVGRRGIYQGVILNMHLHWKKHQTL+V++KTF+ +EVKEIA ELARLTGGIVL++H
Sbjct: 129 KNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVH 188
Query: 251 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
E NTIIMYRGKNY QPPTEIMSPRITL RKKALDKSK RD LRAV+KYIP+LEQEL+LL+
Sbjct: 189 EGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQ 248
Query: 311 AQAETRSENRSDAAEDVQ--NTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIF 368
AQAET+ + + +D Q + EL K S + + E D L A+DS DLSDIF
Sbjct: 249 AQAETKRDYTNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLEL-ATDS-DLSDIF 306
Query: 369 ETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSLGKDED-- 426
ETDSE E + K E RPL+L++F+KFP N+ E EDF D AKS G++ D
Sbjct: 307 ETDSELE-DAKTE-RPLFLEEFEKFPAINNREDEDFG--------DLGKAKSEGEENDDD 356
Query: 427 -SSHFDEVDKMFLRAASLLKKQKR 449
S +FDEVDKMFLRAA LLKK++R
Sbjct: 357 KSPNFDEVDKMFLRAAFLLKKKRR 380
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/418 (57%), Positives = 298/418 (71%), Gaps = 31/418 (7%)
Query: 60 LKRFSIEGRLWIHSAP-LRHYIEKVVEKQESSENSS-SADGAGVAKVKRKKLKGKRAVVR 117
L+ SI+ IH++P + + E Q+ + DG+ K KR KLKG+RAV
Sbjct: 69 LQSCSIQACHCIHTSPSVNSGNQATAEPQQQNPGVPVPVDGSSELKPKRTKLKGRRAVTN 128
Query: 118 WLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTP 177
+LK R+KKKKE++RMTAEEKILYKL+ ARKKEER+V LKKIEP++ SE THDPE+LTP
Sbjct: 129 FLKSLRWKKKKEFQRMTAEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTP 188
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EEHFYFLKMG+KCKNYVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA E
Sbjct: 189 EEHFYFLKMGQKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIE 248
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKK 297
LA L+GGIVL+I + NTIIMYRGKNYAQPP EIMSP+++LSRKKALDKSKY + LRA+++
Sbjct: 249 LATLSGGIVLDIQDGNTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRR 308
Query: 298 YIPKLEQELELLRAQAETRSENRSDAA--------EDVQNTELDKPDFGSIPS------- 342
YIP+LEQELE L AQ + E++ A + + + K GSI +
Sbjct: 309 YIPRLEQELEDLHAQMKLAGEHQGQNAGKHVASISHNTNSMPVRKEPCGSIRNKTVSDLL 368
Query: 343 --MMECS----------ENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQF 390
+E S E+D +ESL ++SEDLSDIFET+SE + E+ + RPLYLD+
Sbjct: 369 SETVEGSKRLEDESSAIEDDSASESLSFTESEDLSDIFETESEEQEEDNKD-RPLYLDRL 427
Query: 391 DKFPV-QNDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 447
DKFP +ND E +DFEEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 428 DKFPSGKNDNEPDDFEEHLRRIASLSDKTDSPSKELKVSELDEIDKIFLRASSLLKKR 485
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/434 (53%), Positives = 292/434 (67%), Gaps = 36/434 (8%)
Query: 49 VLCKAFGPCYGLKRFSIEGRLWIHSA-PLRHYIEKVVEKQESSENSSSADGAGVAKVKRK 107
V + G G + ++++ IH++ P+ + E Q+ E+ + D +G K KRK
Sbjct: 52 VFHRDVGFFSGWQSYNLQIYCCIHTSRPVNSQNHTIAEPQQKQEDVALVDESGRPKAKRK 111
Query: 108 KLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSE 167
KLKG+RAV R+LK R+KKK+E++RMTAEEKILYKL+ AR KEER+V L KIEP + SE
Sbjct: 112 KLKGRRAVTRFLKSLRWKKKREFQRMTAEEKILYKLKLARNKEERLVAALTKIEPDDPSE 171
Query: 168 MTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS 227
THDPE+LTPEEHFYFLKMG+K KNYVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+
Sbjct: 172 PTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFT 231
Query: 228 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKA----- 282
+EVKEIA+ELARL+GGIVL+I E NTIIMYRGKNYAQPP EIMSP++TL RKK
Sbjct: 232 PDEVKEIASELARLSGGIVLDIQEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKWKVLQH 291
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRAQAE-TRSENRSDAAEDVQNTELDKPDFGSIP 341
+ RA+++YIP+LEQEL L AQ + R +AAED+ D + S
Sbjct: 292 WINQNTENASRALRRYIPRLEQELVDLHAQMKLARDYKGQNAAEDITCIS-DSVNSTSAK 350
Query: 342 SMMECS----------------------EN-----DPTTESLMASDSEDLSDIFETDSET 374
CS EN D +ES+ S+SEDLSDIFETDSE
Sbjct: 351 EYSSCSVRKRSVSDLLSESIEGSGRLEDENYEVSADSASESITYSESEDLSDIFETDSEE 410
Query: 375 ETEEKAELRPLYLDQFDKFPVQ-NDEEHEDFEEHLRQISIDSRNAKSLGKDEDSSHFDEV 433
E ++++ +PLYLD+ DKFP + ND E +DFEEHLR+I+ S S K+ S DE+
Sbjct: 411 EQVQESKEQPLYLDKLDKFPSENNDNEPDDFEEHLRKIASLSDRTDSSAKELKVSELDEI 470
Query: 434 DKMFLRAASLLKKQ 447
DK+FLRA+SLLKK+
Sbjct: 471 DKIFLRASSLLKKR 484
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 232/391 (59%), Positives = 281/391 (71%), Gaps = 33/391 (8%)
Query: 87 QESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKA 146
Q++ S D + K KRKKLKG+RAV R+LK R+KKKKE +RMTAEEKILYKL+ A
Sbjct: 97 QQNPGVSVPVDESSELKPKRKKLKGRRAVTRFLKSLRWKKKKEIQRMTAEEKILYKLKLA 156
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
RKKEER+V LKKIEP++ SE THDPE+LTPEEHFYFLKMG+KCKNYVPVGRRGIYQGVI
Sbjct: 157 RKKEERLVAALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVI 216
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
LNMHLHWKKHQTL+VIVKTF+ EEVKEIA ELARL+GGIVL+I + NTIIMYRGKNYAQP
Sbjct: 217 LNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDIQDGNTIIMYRGKNYAQP 276
Query: 267 PTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAED 326
P EIMSP+++LSRKKALDKSKY + LRA+++YIP+LEQELE L AQ + E++ +
Sbjct: 277 PPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQMKLAGEHKGQSVG- 335
Query: 327 VQNTELDKPDFGSIPSMME-CSENDPTTESLMASDS------------------------ 361
++ D S+P+ E CS T S + S S
Sbjct: 336 -KHIASISHDTNSVPARKEPCSSVHSKTVSDLLSGSVEGSKRLEDESSEVEDDSASESLS 394
Query: 362 ----EDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQ-NDEEHEDFEEHLRQISIDSR 416
EDLSDIFET+SE + E+K + PLYLD+ DKFP + ND E +DFEEHLR+I+ S
Sbjct: 395 FSESEDLSDIFETESEEQEEDKKD-HPLYLDRLDKFPSEKNDNEPDDFEEHLRKIASLSD 453
Query: 417 NAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 447
S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 454 KTDSPSKELKVSELDEIDKIFLRASSLLKKR 484
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 210/343 (61%), Positives = 254/343 (74%), Gaps = 29/343 (8%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MTAEEKILYKL+ ARKKEER+V LKKIEP++ SE THDPE+LTPEEHFYFLKMG+KCKN
Sbjct: 1 MTAEEKILYKLKLARKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKN 60
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVGRRGIYQGVILNMHLHWKKHQTL+VIVKTF+ EEVKEIA ELA L+GGIVL+I +
Sbjct: 61 YVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDIQDG 120
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
NTIIMYRGKNYAQPP EIMSP+++LSRKKALDKSKY + LRA+++YIP+LEQELE L AQ
Sbjct: 121 NTIIMYRGKNYAQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRYIPRLEQELEDLHAQ 180
Query: 313 AETRSENRSDAA--------EDVQNTELDKPDFGSI---------PSMMECS-------- 347
+ E++ A + + + K GSI +E S
Sbjct: 181 MKLAGEHQGQNAGKHVASISHNTNSMPVRKEPCGSIRNKTVSDLLSETVEGSKRLEDESS 240
Query: 348 --ENDPTTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPV-QNDEEHEDF 404
E+D +ESL ++SEDLSDIFET+SE + E+ + RPLYLD+ DKFP +ND E +DF
Sbjct: 241 AIEDDSASESLSFTESEDLSDIFETESEEQEEDNKD-RPLYLDRLDKFPSGKNDNEPDDF 299
Query: 405 EEHLRQISIDSRNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQ 447
EEHLR+I+ S S K+ S DE+DK+FLRA+SLLKK+
Sbjct: 300 EEHLRRIASLSDKTDSPSKELKVSELDEIDKIFLRASSLLKKR 342
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/271 (63%), Positives = 209/271 (77%), Gaps = 23/271 (8%)
Query: 143 LRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIY 202
L KA+KK++R+ E LKKIEP +SSE THDPEIL PEEHF+FLKMG K KN VPVGRRGIY
Sbjct: 25 LTKAQKKKKRLCEALKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRRGIY 84
Query: 203 QGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKN 262
QGVIL+MHLH KKHQTLKV VKTFSA EVKEIAAELARL+GGIVL+IHE+NTIIMYRGKN
Sbjct: 85 QGVILSMHLHXKKHQTLKV-VKTFSAAEVKEIAAELARLSGGIVLDIHEDNTIIMYRGKN 143
Query: 263 YAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSD 322
Y+QPPT+IMSPR++LSRKKALDKSKYR LEQEL +LRAQ ++ +E++++
Sbjct: 144 YSQPPTQIMSPRVSLSRKKALDKSKYR------------LEQELAILRAQFKSSAESKTE 191
Query: 323 AAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSETETEEKAEL 382
AAE +QN+ + +E +++ S + SDS+ LSDIFETDS+TE E
Sbjct: 192 AAEAIQNSGRES---------IESGKDETDMNSELDSDSDKLSDIFETDSDTENFVNEE- 241
Query: 383 RPLYLDQFDKFPVQNDEEHEDFEEHLRQISI 413
+PL LD FD FP Q++ E DFEEHL+Q+S+
Sbjct: 242 KPLNLDDFDNFPEQSNGEMNDFEEHLQQMSL 272
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 168/289 (58%), Gaps = 18/289 (6%)
Query: 65 IEGRLWIHS--APLRHYIEKV------------VEKQESSENSSSADGAGVAKVKRKKLK 110
++GR W P+RH V V ++ + G AK +KK+
Sbjct: 59 MDGRGWWFRFRQPVRHGSTAVTLDTGGGFARFSVGGDAGTKQGAGRKGQPPAKAAKKKM- 117
Query: 111 GKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTH 170
++A V LK +R K KK+ + E +I YKL KA++KEE ++E L+K E S E H
Sbjct: 118 SRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVH 177
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
DPEILT EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KVI K +
Sbjct: 178 DPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQ 237
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
V E A EL RL+ G V++I NTII YRGKNY QP ++MSP TLS++KAL+K +Y
Sbjct: 238 VYEYAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQ 295
Query: 291 GLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGS 339
L ++I KLE+ELE + +NR + E + + E + D S
Sbjct: 296 SLEHTSQFIEKLEKELEDYQKHVAL-FKNRGETLETISSEETNVDDLTS 343
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 133/192 (69%), Gaps = 2/192 (1%)
Query: 116 VRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEIL 175
V LK FR K KK+ + E +I YKL KA++KEE ++E L+K E + E HDPEIL
Sbjct: 114 VNQLKWFRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEIL 173
Query: 176 TPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIA 235
T EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KV+ K +V E A
Sbjct: 174 TEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYA 233
Query: 236 AELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAV 295
ELARL+ G V++I NTII YRGKNY QP ++MSP TLS++KAL+K +Y L
Sbjct: 234 EELARLSKGTVIDIKPNNTIIFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQSLEHT 291
Query: 296 KKYIPKLEQELE 307
K+I +LEQELE
Sbjct: 292 SKFIEQLEQELE 303
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 152/250 (60%), Gaps = 9/250 (3%)
Query: 65 IEGRLWIHSAPLRHYIEKVVEKQESS-------ENSSSADGAGVAKVKRKKLKGKRAVVR 117
+ R W +P+R+ V + ++ + +G KK +++ V
Sbjct: 53 LAARSWWFYSPVRYGSTAVTLNTDGGFARFSVGDSGTRQNGGQKQPPANKKKMSRKSKVN 112
Query: 118 WLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTP 177
LK FR K KK+ + E +I YKL KA++KEE ++E L+K E E HDPEILT
Sbjct: 113 QLKWFRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRVPEPVHDPEILTE 172
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KV+ K +V E A E
Sbjct: 173 EEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEE 232
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKK 297
LARL+ G V++I NTII YRGKNY QP ++MSP TLS++KAL+K +Y L +
Sbjct: 233 LARLSKGTVIDIKPNNTIIFYRGKNYVQP--KVMSPPDTLSKQKALEKYRYEQSLEHTSQ 290
Query: 298 YIPKLEQELE 307
+I +LE+ELE
Sbjct: 291 FIEQLEKELE 300
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 151/232 (65%), Gaps = 5/232 (2%)
Query: 107 KKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESS 166
KK ++A V LK +R K KK+ + E +I YKL KA++KEE ++E L+K E +
Sbjct: 102 KKKMSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRTP 161
Query: 167 EMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTF 226
E HDPEILT EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KV+ K
Sbjct: 162 EPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPC 221
Query: 227 SAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+V E A EL RL+ G V++I NTI+ YRGKNY QP ++MSP TLS++KAL+K
Sbjct: 222 RPGQVYEYAEELTRLSKGTVIDIKPNNTIMFYRGKNYVQP--KVMSPPETLSKQKALEKY 279
Query: 287 KYRDGLRAVKKYIPKLEQELELLRAQ-AETRSENRSDAAEDVQN--TELDKP 335
+Y L ++I KLE+ELE + A ++ N+ A E + N T +D P
Sbjct: 280 RYLQSLEHTSQFIEKLEKELEDYKKHVALFKNHNKGVAIEKISNEDTTVDDP 331
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 166/296 (56%), Gaps = 15/296 (5%)
Query: 48 DVLCKAFGPCYGLKRFSIEGRLWIHSAPLRHYIEKVVEKQESSENSSSADGAGVAKVKR- 106
+ L FGP +R+ R W P+R + + GVAK K
Sbjct: 43 ECLWGWFGPEEHRRRW----RPWFQQ-PVRCGSTGITLDTDGKFARFGVGDTGVAKQKGR 97
Query: 107 -----KKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE 161
KK ++A V LK +R K KK+ + E +I YKL KA++KEE ++E L+K +
Sbjct: 98 QQSPPKKKMSRKAKVNQLKWYRLKAKKKMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYD 157
Query: 162 PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV 221
+ E HDPEILT EE FY + G K KNYVPVGRRG++ GV+LNMHLHWK H+T+KV
Sbjct: 158 VPRTPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKV 217
Query: 222 IVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 281
+ K +V E A EL RL+ G +++I NTI+ YRGKNY QP ++MSP TLS++K
Sbjct: 218 VCKPCRPGQVYEYAEELTRLSKGTIIDIKPNNTIMFYRGKNYVQP--QVMSPPDTLSKQK 275
Query: 282 ALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQN--TELDKP 335
AL+K +Y L ++I KLE+ELE + A+E + N + +D P
Sbjct: 276 ALEKYRYLQSLEHTSQFIEKLEKELEDYKKHVALFKNREGVASEKISNEHSTVDDP 331
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 151/238 (63%), Gaps = 3/238 (1%)
Query: 89 SSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARK 148
+ + S+ + + KV R K+A + L+ +R K KK+ E +I YKL KA++
Sbjct: 93 TKDGYSAKEKKSMKKVPRYVKMSKKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKR 152
Query: 149 KEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILN 208
KE ++E L+K+E ++ +DPEILT EE Y + G K KNYVPVGRRG++ GV+LN
Sbjct: 153 KEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGEKKKNYVPVGRRGVFGGVVLN 212
Query: 209 MHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPT 268
MHLHWKKH+T+KV K ++ E A ELARL+ GI ++I +NTII YRGKNY QP
Sbjct: 213 MHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIRPDNTIIFYRGKNYVQP-- 270
Query: 269 EIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAED 326
+IMSP TLS+ KAL+K +Y L ++I KLE+ELE + R +NR +AA D
Sbjct: 271 KIMSPPDTLSKDKALEKYRYEQSLEHTSQFIEKLEKELENYQEHV-VRYKNRKEAAVD 327
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/196 (51%), Positives = 134/196 (68%), Gaps = 2/196 (1%)
Query: 112 KRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHD 171
++A + L+ +R K KK+ E +I YKL KA++KEE ++E L+K + ++ +D
Sbjct: 59 RKAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEEWLIEKLRKFDIPKAPTEAYD 118
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PEILT EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KVI K +V
Sbjct: 119 PEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQV 178
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDG 291
E A ELARL+ GI+++I NTII YRGKNY QP ++MSP TLS+ KAL+K +Y
Sbjct: 179 YEYAEELARLSKGIMIDIKPNNTIIFYRGKNYVQP--QVMSPPDTLSKSKALEKYRYEQS 236
Query: 292 LRAVKKYIPKLEQELE 307
L ++I KLE ELE
Sbjct: 237 LEHTSQFIEKLENELE 252
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 143/223 (64%), Gaps = 3/223 (1%)
Query: 105 KRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKE 164
KR K+ ++A + L+ +R K KK+ E +I YKL KA++KE +VE L+K + +
Sbjct: 56 KRVKM-SRKAKLNELRFYRLKAKKKMISPNPEVRITYKLEKAKRKETWLVEKLRKFDVPK 114
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK 224
S T DPEILT EE Y + G K K+YVPVGRRG++ GV+LNMHLHWK H+T+KVI K
Sbjct: 115 SPPETFDPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICK 174
Query: 225 TFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALD 284
+V E A ELARL+ GIV++I NTII YRGKNY QP E+MSP TLS+ KAL+
Sbjct: 175 PCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQP--EVMSPPNTLSKVKALE 232
Query: 285 KSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDV 327
K +Y L ++I +LE+ELE + + D A+DV
Sbjct: 233 KYRYEQSLEHTSQFIERLEKELEEYHQHLAKFKKGKEDNAKDV 275
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 76 LRHYIEKVVEKQESSEN-------SSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKK 128
+RH+ VVE + + SS +G+ + + K K+A + L+ +R K KK
Sbjct: 92 VRHFSNAVVELKTDNNTVRFSFGCPSSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKK 151
Query: 129 EYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGR 188
+ E +I Y L KA++KE ++E L+K E + +DPEILT EE Y + G
Sbjct: 152 KKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGE 211
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K KN+V +GRRG++ GV+LNMH+HWKKH+T+KVI K +V E A EL RL+ GIV++
Sbjct: 212 KKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID 271
Query: 249 IHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
I N+II YRGKNY QP E+MSP TLS+ KAL+K KY L ++I KLE+ELE
Sbjct: 272 IKPNNSIIFYRGKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELED 329
Query: 309 LRAQAETRSENRSDAA 324
+ + DAA
Sbjct: 330 FQKHLAQFKRRKEDAA 345
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 128/184 (69%), Gaps = 4/184 (2%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFL 184
KKK+ AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY
Sbjct: 405 KKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMK 463
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
KM +K NYVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG
Sbjct: 464 KMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGG 523
Query: 245 IVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQ 304
++I ++TII YRGKNY QP E+MSP TLS+K+AL+KSKY L +V+++I E+
Sbjct: 524 TPIQIIGDDTIIFYRGKNYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEK 581
Query: 305 ELEL 308
ELEL
Sbjct: 582 ELEL 585
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 151/256 (58%), Gaps = 9/256 (3%)
Query: 76 LRHYIEKVVEKQESSEN-------SSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKK 128
+RH+ VVE + + SS +G+ + + K K+A + L+ +R K KK
Sbjct: 30 VRHFSNAVVELKTDNNTVRFSFGCPSSTNGSRLKQKVAKTKMSKKAKLNELRFYRLKAKK 89
Query: 129 EYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGR 188
+ E +I Y L KA++KE ++E L+K E + +DPEILT EE Y + G
Sbjct: 90 KKTSPNPEVRIRYSLEKAKRKEAWLIEKLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGE 149
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K KN+V +GRRG++ GV+LNMH+HWKKH+T+KVI K +V E A EL RL+ GIV++
Sbjct: 150 KKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVID 209
Query: 249 IHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
I N+II YRGKNY QP E+MSP TLS+ KAL+K KY L ++I KLE+ELE
Sbjct: 210 IKPNNSIIFYRGKNYVQP--EVMSPPNTLSKDKALEKYKYEQSLEHTSQFIEKLEKELED 267
Query: 309 LRAQAETRSENRSDAA 324
+ + DAA
Sbjct: 268 FQKHLAQFKRRKEDAA 283
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 17/231 (7%)
Query: 65 IEGRLWIHS--APLRHYIEKV------------VEKQESSENSSSADGAGVAKVKRKKLK 110
++GR W P+RH V V ++ + G AK +KK+
Sbjct: 35 MDGRGWWFRFRQPVRHGSTAVTLDTGGGFARFSVGGDAGTKQGAGRKGQPPAKAAKKKMS 94
Query: 111 GKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTH 170
++A V LK +R K KK + E +I YKL KA++KEE ++E L+K E S E H
Sbjct: 95 -RKAKVNQLKWYRLKAKKTMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVH 153
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
DPEILT EE FY + G K KNYVPVGRRG++ GV+LNMHLHWKKH+T+KVI K +
Sbjct: 154 DPEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQ 213
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 281
V E A EL RL+ G V++I NTII YRGKNY QP ++MSP TLS++K
Sbjct: 214 VYEYAEELTRLSKGTVIDIKPNNTIIFYRGKNYVQP--KVMSPPDTLSKQK 262
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 139/208 (66%), Gaps = 6/208 (2%)
Query: 104 VKRKKLKGKR--AVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE 161
++R +LK KR A R + R K KK+ + A E+I KL AR KE ++E L++ E
Sbjct: 95 MQRMRLKQKRKAANKRDPRQLRVKGKKKQKFPNAAERIKNKLENARIKEALLIERLRRYE 154
Query: 162 -PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLK 220
PK M P LT EE FY KMG+K NYVP+GRRG++ GVILNMH+HWKKH+T+K
Sbjct: 155 VPKVQGPMVK-PHDLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVK 213
Query: 221 VIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRK 280
V K +V E A E+ARL+GGI ++I ++TII YRGK+Y QP E+MSP TLS+K
Sbjct: 214 VYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKDYVQP--EVMSPIDTLSKK 271
Query: 281 KALDKSKYRDGLRAVKKYIPKLEQELEL 308
+AL+KSKY L +V+++I E+ELEL
Sbjct: 272 RALEKSKYEQSLESVRRFIAIAEKELEL 299
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 153/246 (62%), Gaps = 10/246 (4%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
TAE ++ YK+ KA+ KE ++E LK+ E ++ P+ L EE FY K+ +K NY
Sbjct: 134 TAEARLKYKIEKAKLKEAMLIEKLKRYEVAKAEGPVAKPDDLNGEERFYLKKVSQKKSNY 193
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VP+GRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GG+ + I +
Sbjct: 194 VPIGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPINIVGND 253
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 313
T++ YRGK+Y QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 254 TVVFYRGKDYVQP--DVMSPIDTLSKKKALEKSKYEQSLETVRRFIAVSEKELELYYQHV 311
Query: 314 ETRSENRSDAAEDVQNTELDKPDFGSIPSM-MECSENDPTTESLMASDSEDLSDIFETDS 372
+ +S QN +L D S ME + S++AS++ SDI TD+
Sbjct: 312 ALYGKPQS------QNADLIYGDDRKASSREMEELNHGKDQGSILASNTNGFSDIDITDT 365
Query: 373 ETETEE 378
+E+EE
Sbjct: 366 -SESEE 370
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 128/184 (69%), Gaps = 4/184 (2%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFL 184
KKK+ AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY
Sbjct: 26 KKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMK 84
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
KM +K NYVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG
Sbjct: 85 KMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGG 144
Query: 245 IVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQ 304
++I ++TII YRGKNY QP E+MSP TLS+K+AL+KSKY L +V+++I E+
Sbjct: 145 TPIQIIGDDTIIFYRGKNYVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEK 202
Query: 305 ELEL 308
ELEL
Sbjct: 203 ELEL 206
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 181 bits (458), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 150/244 (61%), Gaps = 12/244 (4%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T E ++ YK+ KA+ KE R+VE LKK E ++ P+ L+ EE FY K+ +K NY
Sbjct: 132 TPEARLKYKIEKAKLKEVRLVEKLKKYEVAKAQGPMAKPDDLSGEERFYLKKVSQKKSNY 191
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A E+ARL+GGI + I ++
Sbjct: 192 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNIIGDD 251
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 313
TI+ YRGKNY QP E+MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 252 TIVFYRGKNYVQP--EVMSPIDTLSKKKALEKSKYEQSLETVRRFIAISEKELELYYRHV 309
Query: 314 ETRSENRSDAAE----DVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFE 369
+S A+ D + T L K + + + + +P + SD +SD+ E
Sbjct: 310 ALYGNPQSQKADLVCGDDRETSLLK-----MGGLDQGKDQEPHLATNHFSDHH-VSDVSE 363
Query: 370 TDSE 373
+D E
Sbjct: 364 SDEE 367
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 127/183 (69%), Gaps = 2/183 (1%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK 185
KKK+ AEE+I YK+ KAR KE ++E LK+ E ++ P+ LT EE FY K
Sbjct: 123 KKKKQRFACAEERIKYKIEKARIKEALLIERLKRYEVPKAQGPVVKPDDLTGEERFYLKK 182
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
M +K NY+ +GRRG++ GV+LNMH+HWKKH+T+KV K +V E A ELARL+GGI
Sbjct: 183 MAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEYAQELARLSGGI 242
Query: 246 VLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQE 305
L+I ++TII YRGKNY QP E+MSP TLS+KKAL+KSKY L +V+++I E+E
Sbjct: 243 PLQIIGDDTIIFYRGKNYEQP--EVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKE 300
Query: 306 LEL 308
LEL
Sbjct: 301 LEL 303
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 127/184 (69%), Gaps = 4/184 (2%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTPEEHFYFL 184
KKK+ AEE+I +KL KAR KE ++E LK+ E PK + P LT EE FY
Sbjct: 69 KKKKQRFANAEERIKFKLEKARIKEALLIERLKRYEVPKLQGPIVQ-PVNLTGEERFYMK 127
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
KM +K NYVPVGRRG++ GVILNMH+HWKKH+T+KVI K +V E A E+ARL+GG
Sbjct: 128 KMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGG 187
Query: 245 IVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQ 304
++I ++TII YRGKNY QP E MSP TLS+K+AL+KSKY L +V+++I E+
Sbjct: 188 TPIQIIGDDTIIFYRGKNYVQP--EXMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEK 245
Query: 305 ELEL 308
ELEL
Sbjct: 246 ELEL 249
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 147/235 (62%), Gaps = 2/235 (0%)
Query: 93 SSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEER 152
S + A +++ +K ++A + L+ +R K KK+ E +I YKL KA++KE
Sbjct: 43 SDDINNAKKSQLNKKFKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETW 102
Query: 153 IVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLH 212
++E L+K + + T+DPEILT EE Y + G + K+YVPVGRRG++ GV+LNMHLH
Sbjct: 103 LIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLH 162
Query: 213 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
WK H+T+KVI K +V E A ELARL+ GIV++I NTII YRGKNY +P E+MS
Sbjct: 163 WKNHETVKVICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKP--EVMS 220
Query: 273 PRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDV 327
P TLS+ KAL+K +Y L ++I KLE+ELE + + D A+DV
Sbjct: 221 PPNTLSKAKALEKYRYEQSLEHTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKDV 275
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 138/207 (66%), Gaps = 3/207 (1%)
Query: 103 KVKRKKLKGKR-AVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE 161
K++RK+ K KR A R K+K+ + AEE+I YKL +A+ KE +VE LK+ E
Sbjct: 71 KLQRKREKEKRRAANRRDPRCLTVKRKKQKFANAEERIKYKLERAKIKEALLVERLKRYE 130
Query: 162 PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKV 221
+ P LT EE F+ KM +K NYVP+GRRG++ GVILNMH+HWKKH+T+KV
Sbjct: 131 VPKVQGPEVKPHDLTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKV 190
Query: 222 IVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 281
I +V E A E+ARL+GGI +++ ++TII YRGKNY QP E+MSP TLS+K+
Sbjct: 191 ICNFCKPGQVHEYAQEIARLSGGIPIQVIGDDTIIFYRGKNYVQP--EVMSPIDTLSKKR 248
Query: 282 ALDKSKYRDGLRAVKKYIPKLEQELEL 308
AL+KSKY L +V+++I E+ELEL
Sbjct: 249 ALEKSKYEQSLESVRRFIAIAEKELEL 275
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 128/190 (67%), Gaps = 4/190 (2%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTP 177
L+ FR K K++ E +I YKL KA++KE ++E L+K + PK +E T DPEILT
Sbjct: 196 LRFFRLKAKQKMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTE 254
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE Y + G K K+YVPVGRRG++ GV+LNMHLHWK H+T+KVI K + E A E
Sbjct: 255 EERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEE 314
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKK 297
LARL+ GIV++I + II YRGKNY QP ++MSP TLS+ KAL+K +Y L +
Sbjct: 315 LARLSKGIVIDIKPNSIIIFYRGKNYVQP--KVMSPPDTLSKAKALEKYRYEQSLEHTSQ 372
Query: 298 YIPKLEQELE 307
+I +LE+ELE
Sbjct: 373 FIERLEKELE 382
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 2/175 (1%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T E ++ YK+ KA+ KE R+VE LKK E ++ + L+ EE FY K+ +K NY
Sbjct: 132 TPEARLKYKIEKAKLKEARLVEKLKKYEIAKAQGPMAKVDDLSGEERFYLKKVSQKKSNY 191
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A E+ARL+GGI + + ++
Sbjct: 192 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYANEIARLSGGIPVNVIGDD 251
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
TI+ YRGK+Y QP E+MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 252 TIVFYRGKSYVQP--EVMSPVDTLSKKKALEKSKYEQSLETVRRFIAISEKELEL 304
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T E ++ YK+ KA+ KE +VE LKK E ++ + L EE FY K+ +K NY
Sbjct: 131 TPEARLKYKIEKAKLKEAMLVEKLKKYEIAKAQGPMAKQDDLDGEERFYLKKVSQKKSNY 190
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
VPVGRRG++ GVILNMHLHWKKH+T+KVI K +++E A+E+ARL+GGI + +
Sbjct: 191 VPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELEL 308
TI+ YRGKNY QP ++MSP TLS+KKAL+KSKY L V+++I E+ELEL
Sbjct: 251 TIVFYRGKNYVQP--DVMSPVDTLSKKKALEKSKYEQSLETVRRFIAVSEKELEL 303
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 4/183 (2%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK 185
KKK++ + AEE+I YKL KA+ KE ++E LK+ E + P +T EE FY K
Sbjct: 117 KKKKF--VNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKK 174
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
MG+K NYVP+GRRG++ GVILNMHLHWKKH+T+KVI +V++ A ELA+L+GG+
Sbjct: 175 MGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGV 234
Query: 246 VLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQE 305
+ I ++TII YRGK Y QP ++MSP TLS+K+A +KSKY L +V+ +I E+E
Sbjct: 235 PVNIIGDDTIIFYRGKGYVQP--QVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKE 292
Query: 306 LEL 308
LEL
Sbjct: 293 LEL 295
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 138/215 (64%), Gaps = 10/215 (4%)
Query: 92 NSSSADGAGVA------KVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRK 145
N+ S+ G V K KR KL ++A V L+ +R K KK+ E +I YKL K
Sbjct: 83 NNVSSSGNNVVPTRKEKKWKRAKL-SRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEK 141
Query: 146 ARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGV 205
A++KEE ++E L+K + +S +DPE LT EE Y + G K KN+V VGRRG++ GV
Sbjct: 142 AKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGV 201
Query: 206 ILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYA 264
+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NTI++YRGKNY
Sbjct: 202 VLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYV 261
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 299
+P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 262 RP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 294
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 138/215 (64%), Gaps = 10/215 (4%)
Query: 92 NSSSADGAGVA------KVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRK 145
N+ S+ G V K KR KL ++A V L+ +R K KK+ E +I YKL K
Sbjct: 94 NNVSSSGNNVVPTRKEKKWKRAKL-SRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEK 152
Query: 146 ARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGV 205
A++KEE ++E L+K + +S +DPE LT EE Y + G K KN+V VGRRG++ GV
Sbjct: 153 AKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGV 212
Query: 206 ILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYA 264
+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NTI++YRGKNY
Sbjct: 213 VLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYV 272
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 299
+P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 273 RP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 305
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 138/215 (64%), Gaps = 10/215 (4%)
Query: 92 NSSSADGAGVA------KVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRK 145
N+ + G V K KR K+ ++A V L+ +R K KK+ E +I YKL K
Sbjct: 94 NNVTGSGNNVVPTRKEKKWKRAKM-SRKAKVNELRFYRLKAKKKMNSPNPEVRIRYKLEK 152
Query: 146 ARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGV 205
A++KEE ++E L+K + +SS +DPE LT EE Y + G K KN+V VGRRG++ GV
Sbjct: 153 AKRKEEWLIEKLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGV 212
Query: 206 ILNMHLHWKKHQTLKVIVKTFSAE-EVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYA 264
+LN+HLHWKKH+T+KVI K + +V E A ELARL+ GIV+++ NTI++YRGKNY
Sbjct: 213 VLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTIVLYRGKNYV 272
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 299
+P E+MSP TLS+ KAL+K +Y L ++I
Sbjct: 273 RP--EVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 305
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 147/252 (58%), Gaps = 24/252 (9%)
Query: 126 KKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK 185
KKK++ + AEE+I YKL KA+ KE ++E LK+ E + P +T EE FY K
Sbjct: 114 KKKKF--VNAEERIKYKLEKAKIKEALLIEKLKRYEVAKVQGPEVRPHEITGEERFYLKK 171
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
MG+K NYVP+GRRG++ GVILNMHLHWKKH+T+KVI +V++ A ELA+L+GG+
Sbjct: 172 MGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGV 231
Query: 246 VLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQE 305
+ I ++TII YRGK Y QP ++MSP TLS+K+A +KSKY L +V+ I E+E
Sbjct: 232 PVNIIGDDTIIFYRGKGYVQP--QVMSPIDTLSKKRAYEKSKYEQSLESVRHSIAIAEKE 289
Query: 306 LELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLS 365
LEL D P+ + S+++ D +ES D+E
Sbjct: 290 LELYYRHVAL----------------YDDPNNRNPLSILD----DSPSESRQHHDNELYL 329
Query: 366 DIFETDSETETE 377
+TD+ +E E
Sbjct: 330 SCLDTDANSEDE 341
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 126/185 (68%), Gaps = 3/185 (1%)
Query: 125 KKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFL 184
K+KK + EE+I KL +AR KE ++VE LK+ E + P LT EE F+
Sbjct: 63 KRKKGQKFANVEERIKTKLERARIKEAKLVERLKRYEVPKMQGPEVKPHELTGEERFFMK 122
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKEIAAELARLTG 243
KM +K NYVP+GRRG++ GVILNMH+HWKKH+T+KVI + +V+E A E+ARL+G
Sbjct: 123 KMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNSSCKPGQVQEFAQEIARLSG 182
Query: 244 GIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLE 303
GI ++I ++T+I YRGKNY QP ++MSP TLS+KKAL+KSKY L V+ +I E
Sbjct: 183 GIPIQIIGDDTVIFYRGKNYVQP--KVMSPVDTLSKKKALEKSKYEQSLETVRHFIAIAE 240
Query: 304 QELEL 308
+ELEL
Sbjct: 241 KELEL 245
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/189 (48%), Positives = 125/189 (66%), Gaps = 4/189 (2%)
Query: 112 KRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTH 170
K+A + L+ +R K KK+ E +I YKL KA++KE ++E L K E PK +E T
Sbjct: 43 KKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEAWLIEKLSKFEVPKLRAE-TC 101
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
DPE+LT EE Y + G K KN++ VGRRG++ GV+LNMHLHWKKH+T+K+I K +
Sbjct: 102 DPEMLTEEEKHYLKRTGEKKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQ 161
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
+ + A ELARL+ GIV++I N+II YRGKNY QP +MSP TLS+ KAL+K KY
Sbjct: 162 IHQYAEELARLSKGIVIDIRPNNSIIFYRGKNYVQP--TVMSPPDTLSKNKALEKYKYEQ 219
Query: 291 GLRAVKKYI 299
L ++I
Sbjct: 220 SLEHTSQFI 228
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 168/310 (54%), Gaps = 24/310 (7%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK MT E+ L+++ K +KK E LKK E E DPE+LTPE
Sbjct: 169 LRQIRLAKKLRKASMTPEQTFLWRIEKCKKKIALHEEQLKKFELPPLPEPDPDPEVLTPE 228
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ + K+G K KNYVPVGRRGIY G I NMH+HWKKH+T+++ F E++KE+ L
Sbjct: 229 QLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETL 288
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
RL+GGIV++IH+ TIIM+RG+NY +P +I +++KAL KSK+ + ++K
Sbjct: 289 ERLSGGIVIDIHQGTTIIMWRGRNYKRPKVDIPIIFKNFNKRKALIKSKHEQSIGSLKDQ 348
Query: 299 IPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMA 358
I K E++L LRA R+ E +N + P+ P+ + ++D
Sbjct: 349 IVKWEKDLRELRADMAREEAARARWLE--ENPGMAPPE---PPAPVSVEQSD-------- 395
Query: 359 SDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNA 418
DS++++DI S+ + E +L P Y D +D E+ D + L S+ S +
Sbjct: 396 DDSDEVTDI----SDDDITEVDDLGPEYDD-------DSDWEYPDSDVDLPDRSVPSNDN 444
Query: 419 KSLGKDEDSS 428
S DS+
Sbjct: 445 ASTSNVSDSN 454
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 108/165 (65%), Gaps = 4/165 (2%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE-PKESSEMTHDPEILTP 177
L+ +R K K++ E +I YKL KA++KE ++E L+K + PK +E T DPEILT
Sbjct: 131 LRFYRLKVKQKMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTE-TFDPEILTE 189
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE Y + G K K+YVPVGRRG++ V+LNMHLHWKKH+T+KVI K + E E
Sbjct: 190 EERHYLKRTGEKKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEE 249
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
L R + GIV++I N II YRG+NY QP ++MSP TLS+ K
Sbjct: 250 LTRPSKGIVIDIKPNNIIIFYRGRNYVQP--KVMSPPDTLSKAKV 292
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT EE++LY L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + +N
Sbjct: 107 MTEEERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRN 166
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH+
Sbjct: 167 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDV 226
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQEL
Sbjct: 227 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 122/174 (70%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT EE++LY L++A+KK +++ LKK E E HDPE+LTPE+ + K+G + +N
Sbjct: 107 MTEEERLLYNLKRAKKKVALLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRN 166
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH+
Sbjct: 167 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDV 226
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+EQEL
Sbjct: 227 KTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALDSQKLNIKKIEQEL 278
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 131/196 (66%), Gaps = 2/196 (1%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK + + MT EE+++Y L++A+KK +++ LKK E E HDPE+LTPE
Sbjct: 95 LREIRRAKKLKKKLMTEEERLIYNLKRAKKKVALLLQKLKKYELPELPHPRHDPELLTPE 154
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A+ L
Sbjct: 155 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASML 214
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
ARL+GGIV+ +H TIIM+RG+NY QP I P TL+++KAL K+++ L + K
Sbjct: 215 ARLSGGIVINVHNVKTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALESQKLN 272
Query: 299 IPKLEQELELLRAQAE 314
I K+EQ+L + E
Sbjct: 273 IKKIEQQLRRMGVNPE 288
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/196 (45%), Positives = 131/196 (66%), Gaps = 2/196 (1%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK + + MT EE+++Y L++A+KK +++ LKK E E HDPE+LTPE
Sbjct: 95 LREIRRAKKLKKKLMTEEERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPE 154
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ + K+G + KNYVPVG RG++ GV+ NMHLHWK H+T++V F E++KE+A+ L
Sbjct: 155 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASML 214
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
ARL+GGIV+ +H TIIM+RG+NY QP I P TL+++KAL K+++ L + K
Sbjct: 215 ARLSGGIVINVHNVKTIIMFRGRNYRQPKNLI--PINTLTKRKALFKARFEQALESQKLN 272
Query: 299 IPKLEQELELLRAQAE 314
I K+EQ+L + E
Sbjct: 273 IKKIEQQLRRMGVNPE 288
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 143/222 (64%), Gaps = 6/222 (2%)
Query: 94 SSADGAGV-AKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEER 152
S+A G + +KV+R+ K +R ++ + +KK MT EE+++Y LR+A+KK
Sbjct: 55 STAGGRSMRSKVERRMRKESGKTLREVRRAQKLRKK---LMTDEERLIYNLRRAKKKVAL 111
Query: 153 IVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLH 212
+++ LKK E E HDPE+LT E+ + K+G + KNYVPVG RG++ GV+ NMHLH
Sbjct: 112 LLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 171
Query: 213 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
WK H+T++V F E++KE+A LARL+GGIV+ +H+ TIIM+RG+NY QP I
Sbjct: 172 WKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLI-- 229
Query: 273 PRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
P TL+++KAL K+++ L + K I K+EQ+L + E
Sbjct: 230 PINTLTKRKALFKARFEQALDSQKLNIKKIEQQLRRMGVNPE 271
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK + + MT EE+++Y L++A+KK +++ LKK + E HDPE+ T E
Sbjct: 36 LREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSE 95
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ F K+G K KNYVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A+ +
Sbjct: 96 QVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMI 155
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
ARL+GG+V+ IH TIIM+RG+NY QP I P TL+++KAL K+++ L + K
Sbjct: 156 ARLSGGVVINIHNVKTIIMFRGRNYRQPKNLI--PVNTLTKRKALFKARFEQALESQKLN 213
Query: 299 IPKLEQELELLRAQAE 314
I K EQ+L + E
Sbjct: 214 IKKTEQQLRRMGVNPE 229
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 6/227 (2%)
Query: 92 NSSSADGAGVAKVKRKKLKGKRAVVR----WLKHFRYKKKKEYERMTAEEKILYKLRKAR 147
N+ S G +K + + K +R + + L+ R KK + + MT EE+++Y L++A+
Sbjct: 65 NNGSCRGMSTSKGRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAK 124
Query: 148 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 207
KK +++ LKK E E HDPE+ T E+ + K+G + +NYVPVG RG++ GV+
Sbjct: 125 KKVALLLQKLKKYELPELPPPLHDPELFTSEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQ 184
Query: 208 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPP 267
NMHLHWK H+T++V F E++KE+A LARL+GGIV+ IH TIIM+RG+NY QP
Sbjct: 185 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMFRGRNYRQPK 244
Query: 268 TEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
I P TL+++KAL K+++ L + K I K+EQ+L + E
Sbjct: 245 NLI--PINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPE 289
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 128/196 (65%), Gaps = 2/196 (1%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK + + MT EE+++Y L++A+KK +++ LKK + E HDPE+ T E
Sbjct: 36 LREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSE 95
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ F K+G K KNYVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A+ +
Sbjct: 96 QVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMI 155
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
ARL+GG+V+ IH TIIM+RG+NY QP I P TL+++KAL K+++ L + K
Sbjct: 156 ARLSGGVVINIHNVKTIIMFRGRNYRQPKNLI--PVNTLTKRKALFKARFEQALESQKLN 213
Query: 299 IPKLEQELELLRAQAE 314
I K EQ+L + E
Sbjct: 214 IKKTEQQLRRMGVNPE 229
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
Query: 119 LKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPE 178
L+ R KK + + MT EE+++Y L++A+KK +++ LKK + E HDPE+LTPE
Sbjct: 25 LREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYDLPELPSPLHDPELLTPE 84
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
+ + K+G + KNYVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+A +
Sbjct: 85 QLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEKIKEMATMI 144
Query: 239 ARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY 298
ARL+GGIV+ +H TIIM+RG+NY QP I P TL+++KAL K+++ L + K
Sbjct: 145 ARLSGGIVVNVHNVKTIIMFRGRNYRQPKDLI--PLNTLTKRKALFKARFEQALESQKLN 202
Query: 299 IPKLEQELELLRAQAE 314
I ++EQ+L + E
Sbjct: 203 IKQIEQQLRRMGVNPE 218
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +EK++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 91 MTEDEKLIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 150
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 151 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 210
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 211 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 262
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +EK++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 92 MTEDEKLIYNLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 151
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 152 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 211
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 212 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 263
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 142/230 (61%), Gaps = 12/230 (5%)
Query: 94 SSADGAGV-AKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEER 152
S+A G + +KV+R+ K +R ++ + +KK MT EE+++Y LR+A+KK
Sbjct: 70 STAGGRSMRSKVERRMRKESGKTLREVRRAQKLRKK---LMTDEERLIYNLRRAKKKVAL 126
Query: 153 IVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLH 212
+++ LKK E E HDPE+LT E+ + K+G + KNYVPVG RG++ GV+ NMHLH
Sbjct: 127 LLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLH 186
Query: 213 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP----PT 268
WK H+T++V F E++KE+A LARL+GGIV+ +H+ TIIM+RG+NY QP P
Sbjct: 187 WKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPI 246
Query: 269 EIMSPRITLSRKK----ALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
++ R + KK AL K+++ L + K I K+EQ+L + E
Sbjct: 247 NTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQQLRRMGVNPE 296
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +EK +Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 94 MTEDEKFIYNLRRAKKKVALLLQKLKKYELPDLQAPRHDPELLTAEQLQAYKKIGFRNRN 153
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 154 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 213
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 214 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIETQL 265
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +E+++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 102 MTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 161
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 162 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 221
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 222 KTIIMFRGRNYRQPKNLI--PLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +E+++Y LR+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 102 MTDDERLIYSLRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 161
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 162 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNT 221
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K+++ L + K I K+E +L
Sbjct: 222 KTIIMFRGRNYRQPKNLI--PLNTLTKRKALFKARFEQALESQKLNIKKIETQL 273
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 133 MTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN 192
MT +E++++ +R+A+KK +++ LKK E + HDPE+LT E+ + K+G + +N
Sbjct: 106 MTDDERLIHSMRRAKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRN 165
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
YVPVG RG++ GV+ NMH+HWK H+T++V F E++KE+AA L RL+GGIV+ IH
Sbjct: 166 YVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNT 225
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQEL 306
TIIM+RG+NY QP I P TL+++KAL K++Y L + K I K+E +L
Sbjct: 226 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARYEQALESQKLNIKKIETQL 277
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 7/172 (4%)
Query: 148 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 207
K E+I+ L+ E KE S++ D E +T EE F K+G K Y+ +GRRG+Y G +
Sbjct: 670 KNAEKIIAKLQ--EKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVE 727
Query: 208 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYA 264
NMHLHWK + +K+IV+ + ++VK +A L + G+V+ + + +I+YRGKNY
Sbjct: 728 NMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYT 787
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETR 316
+P + M P+ L+R++AL +S A+K +I LE+++ELL+A+ E R
Sbjct: 788 RP--DAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAELEER 837
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARL 241
F ++ RK + +GR QG+ M W+K K+ +K E +A EL L
Sbjct: 490 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRIL 549
Query: 242 TGGIVLEIHEENTIIMYRGKNYAQPPT 268
TGG +L ++E I+ YRG +Y PPT
Sbjct: 550 TGGTLLSRNKE-YIVFYRGNDYL-PPT 574
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 7/172 (4%)
Query: 148 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 207
K E+I+ L+ E KE S++ D E +T EE F K+G K Y+ +GRRG+Y G +
Sbjct: 613 KNAEKIIAKLQ--EKKEPSDLPTDLETITDEERLLFRKIGLSMKPYLLLGRRGVYDGTVE 670
Query: 208 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---IIMYRGKNYA 264
NMHLHWK + +K+IV+ + ++VK +A L + G+V+ + + +I+YRGKNY
Sbjct: 671 NMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKGYEVIVYRGKNYT 730
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETR 316
+P + M P+ L+R++AL +S A+K +I LE+++ELL+A+ E R
Sbjct: 731 RP--DAMRPKNMLTRRQALARSIELQRREALKHHILDLEEKIELLKAELEER 780
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARL 241
F ++ RK + +GR QG+ M W+K K+ +K E +A EL L
Sbjct: 433 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRIL 492
Query: 242 TGGIVLEIHEENTIIMYRGKNYAQPPT 268
TGG +L ++E I+ YRG +Y PPT
Sbjct: 493 TGGTLLSRNKE-YIVFYRGNDYL-PPT 517
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
E ++LY +K R+ E + + K ++P SE+ D EI+T EE + K+G ++
Sbjct: 611 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSEIITEEERLLYRKIGLSMDPFLL 667
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 668 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 727
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 728 YAIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 785
Query: 313 AETRSENRSDAAEDVQNTEL--DKPDFGS 339
+ E R+ + E+ +N L D+ DF S
Sbjct: 786 QDDDMETRNKSDEEEENLYLRVDESDFSS 814
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
E ++LY +K R+ E + + K ++P SE+ D EI+T EE + K+G ++
Sbjct: 569 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSEIITEEERLLYRKIGLSMDPFLL 625
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 626 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 685
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 686 YAIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 743
Query: 313 AETRSENRSDAAEDVQNTEL--DKPDFGS 339
+ E R+ + E+ +N L D+ DF S
Sbjct: 744 QDDDMETRNKSDEEEENLYLRVDESDFSS 772
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 6/179 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
K+ +KL A+KK E+ L K+E +E + PE +T EE F F K+G + K ++ +
Sbjct: 546 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 605
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 606 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 665
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++E L+A+
Sbjct: 666 AIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAE 722
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 140/242 (57%), Gaps = 21/242 (8%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
E+K+ + RK R+ E+ +++ ++P SE DPE +T EE F F K+G + K ++
Sbjct: 594 EQKLSFAERKLRRAEKALMKVESFLKP---SEYKADPESITDEERFMFRKLGLRMKAFLL 650
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+GRRG++ G I NMHLHWK + +K+IVK + E+VK+IA L +GG+++ + + +
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKG 710
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
++I+YRGK+Y +P T + P+ L+++KAL +S A+ +I L+ ++ +R++
Sbjct: 711 YSVIVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRHEALMNHISTLQSKVGRIRSE 768
Query: 313 AET--RSENRSDAA----------EDVQNTELDKPDFGSIPSM-MECSENDPTTESLMAS 359
E + +++ D A D +N+E++ + G + SEND ES + S
Sbjct: 769 IEQMEKVKDKGDEALYDKLDSAYPSDDENSEVEDGEQGDEAYLKTYNSENDSEIESEVES 828
Query: 360 DS 361
D+
Sbjct: 829 DN 830
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 150 EERIVEGLKKIEPKESSEMTHDPEILTPEEHF-YFLKMGRKCKNYVPVGRRGIYQGVILN 208
E+ +VE L++ + S T E+ PE LK+ + K+ +GR G+ Q V+
Sbjct: 185 EKPVVEELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDK 244
Query: 209 MHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPT 268
+H WK + +++ + +A +K + L R TGG+V+ N++ +YRG +Y P
Sbjct: 245 IHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVI-WRSGNSVSLYRGVSYEVPSV 303
Query: 269 E 269
+
Sbjct: 304 Q 304
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 113/184 (61%), Gaps = 12/184 (6%)
Query: 136 EEKILYKLRKARKKEERI--VEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
E+K+ + RK R+ E + VEG K SE DPE +T EE F F K+G + K +
Sbjct: 598 EKKLAFAQRKLRRAERTLNKVEGFLK-----PSERQADPESITDEERFMFRKLGLRMKAF 652
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIH 250
+ +GRRG++ G + NMHLHWK + +K+I+K S E+VK+IA L +GG+++ +I
Sbjct: 653 LLLGRRGVFDGTVENMHLHWKYRELVKIILKAKSFEQVKKIALALEAESGGVLVSVDKIS 712
Query: 251 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+ II+YRGK+Y +P ++ P+ L+++KAL +S A++ ++ LE ++E +R
Sbjct: 713 KGYAIIVYRGKDYQRP--SMLRPKNLLTKRKALARSIEIQRSEALQNHVSALEIKVEKIR 770
Query: 311 AQAE 314
++ E
Sbjct: 771 SEIE 774
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE L+ + K+ VG RG+ Q V+ +H WK + +V V+ A +
Sbjct: 209 ELTLPESELRRLRNLTYGTKSKTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNM 268
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K + L TGG+V+ T+ +YRG +Y P
Sbjct: 269 KRMHEILENKTGGLVI-WRSGATVSLYRGVSYEDP 302
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R + VGR QG+ + M W+K +KV +K E +A ++ +LTG
Sbjct: 431 RLARVLPPHFAVGRSRQLQGLAVAMIKLWEKSSIVKVALKRGVQLTTSERMAEDIKKLTG 490
Query: 244 GIVLEIHEENTIIMYRGKNYAQPP-TEIMSPRITLSRKKALDKSKYRDGLRAVKKYIP 300
G++L ++ ++ YRGK++ P +E + R L+ K+L + + LRA IP
Sbjct: 491 GLLLS-RNKDFLVFYRGKDFLSPEVSEALLERERLA--KSLQDEEEQARLRASALVIP 545
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 111/179 (62%), Gaps = 6/179 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
K+ +KL A+KK E+ L K+E +E + PE +T EE F F K+G + K ++ +
Sbjct: 1227 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 1286
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 1287 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 1346
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++E L+A+
Sbjct: 1347 AIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVERLKAE 1403
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
EEK+ RK R+ E +++ ++P SE DPE +T EE F F K+G + K ++
Sbjct: 594 EEKLSLAERKIRRAERALMKVEVSLKP---SETRADPESITDEERFMFRKLGLRMKAFLL 650
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+GRRG++ G I NMHLHWK + +K+IVK + E VK+IA L +GG+++ + + +
Sbjct: 651 LGRRGVFDGTIENMHLHWKYRELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKG 710
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+I++YRGK+Y +P ++ P+ L+++KAL +S A+ +I L+ ++E LR++
Sbjct: 711 YSILVYRGKDYQRP--SMLRPKNLLTKRKALARSIELQRHEALSSHISTLQSKVEKLRSE 768
Query: 313 AETRSENRSDAAEDVQN 329
E + + + E + N
Sbjct: 769 IEQIEKVKEEGDEALYN 785
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R + +GR QG+ M W+K KV +K E +A E+ +LTG
Sbjct: 427 RIARGLPPHFALGRNRQLQGLAAAMIKLWEKSSIAKVALKRGVQLTTSERMAEEIKKLTG 486
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
GI+L ++ ++ YRGKN+ P
Sbjct: 487 GIILS-RNKDFLVFYRGKNFLSP 508
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFY-FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE LK+ K+ +G G+ Q + +H WK + +++ + +A +
Sbjct: 208 ELTLPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNM 267
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K + L + TGG+V+ N++ +YRG +Y P
Sbjct: 268 KRMHEILEKKTGGLVI-WRSGNSVSLYRGVSYKDP 301
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 10/209 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
E ++LY +K R+ E + + K ++P SE+ D E +T EE + K+G ++
Sbjct: 568 ELRLLYGKQKLRRAERDLAKVQKDLDP---SELPTDSETITEEERLLYRKIGLSMDPFLL 624
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+GRR +Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ + +
Sbjct: 625 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 684
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR-A 311
+II+YRGKNY P + P L+RKKA +S A+K ++ LE+ +ELL+
Sbjct: 685 YSIILYRGKNYQMPFR--LRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTG 742
Query: 312 QAETRSENR-SDAAEDVQNTELDKPDFGS 339
Q + R R SD E+ +D+ DF S
Sbjct: 743 QDDDREPGRKSDGEEENLYLRVDESDFSS 771
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 201
KLRKA K ++ E L + S + D E ++ EE F F K+G K Y+ +G+RG+
Sbjct: 715 KLRKAEKALAKVHEHL------DPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGKRGV 768
Query: 202 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMY 258
Y G I NMHLHWK + +KVIV+ S +VK IA L +GG+++ I II+Y
Sbjct: 769 YDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVY 828
Query: 259 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
RGKNY P E+M P+ L++++AL +S A+K +I L++ +ELL+ + E
Sbjct: 829 RGKNYLHP--EVMRPKNLLTKRQALVRSIELQRREALKHHISDLQERIELLKLELE 882
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
LT +E F ++ R + +GR QG+ + W++ +K+ +K E
Sbjct: 529 LTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWERSAIVKIAIKRGVQNTRNER 588
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+A EL LTGGI+L ++E I+ YRG ++ P
Sbjct: 589 MAEELKVLTGGILLSRNKE-YIVFYRGNDFLPP 620
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 9/183 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
E+K+ K RK E+ + + + ++P +++ D E LT EE F F K+G K Y+
Sbjct: 581 EKKLALAKSKFRKAEKALAKVQRDLDP---ADIPSDLETLTNEERFLFRKIGLSMKPYLL 637
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE--- 252
+GRR +Y G I NMHLHWK + +K+IVK ++ +VK I+ L +GG+++ + ++
Sbjct: 638 LGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRG 697
Query: 253 -NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 311
+TII+YRGKNY P ++ P+ L+R++AL +S A+K +I LE+ + LL++
Sbjct: 698 HHTIIVYRGKNYFSP--RVVRPKNLLTRRQALARSVELQRREALKHHISDLEERIGLLKS 755
Query: 312 QAE 314
+ E
Sbjct: 756 ELE 758
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
LT +E F ++ R + +GR QG+ M W+ K+ +K +
Sbjct: 404 LTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDR 463
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+A EL +LTGG +L ++E I+ YRG ++ P
Sbjct: 464 MAEELRKLTGGTLLSRNKE-YIVFYRGNDFLPP 495
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
VG +GI Q ++ ++H W+ + +K + +K+ L GGIV+ ++I
Sbjct: 222 VGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQILESKIGGIVI-WRSGSSI 280
Query: 256 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKY----RDGLRAVKKYIPKLEQELE 307
++YRG Y P E ++ L+++ A+D S + DG +V + + E ++
Sbjct: 281 VLYRGMAYKLPCIENYK-KVNLAKENAVDHSLHVGNGSDGQASVNETVGTAESVIQ 335
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 110/182 (60%), Gaps = 13/182 (7%)
Query: 138 KILYKLRKARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
K+ +KL A+KK E+ L K+E P E S PE +T EE F F K+G + K +
Sbjct: 552 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSR----PETITDEERFMFRKLGLRMKAF 607
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
+ +GRRG++ G I NMHLHWK + +K++VK S +VK IA L +GGI++ + + +
Sbjct: 608 LLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVS 667
Query: 254 ---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
I+++RGKNY +P + + PR LS++KAL +S +A+ ++ KL +++ L+
Sbjct: 668 KGYAIVVFRGKNYRRPSS--LRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVAQLK 725
Query: 311 AQ 312
A+
Sbjct: 726 AE 727
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 117/197 (59%), Gaps = 17/197 (8%)
Query: 120 KHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPE 178
KH +K E++ AE++I K ER+ L K+E + SE T+ E +T E
Sbjct: 541 KHADVVRKLEWKLSLAEKRI--------AKAERV---LGKVETALKPSEDTNPHETITEE 589
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
E F F K+G + K ++ +GRRG++ G I NMHLHWK + +K++VK S EVK IA L
Sbjct: 590 ERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSL 649
Query: 239 ARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAV 295
+GGI++ + + + I+++RGK+Y +P ++ PR LS++KAL +S ++A+
Sbjct: 650 EVESGGILVSVDKVSKGYAIVVFRGKDYRRP--SMLRPRNLLSKRKALARSIEIQRMQAL 707
Query: 296 KKYIPKLEQELELLRAQ 312
++I KL + + LR++
Sbjct: 708 NRHIGKLNRRVNQLRSE 724
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 162 PKESSEMTHDP----EILTPEEHFYFLKMGR-KCKNYVPVGRRGIYQGVILNMHLHWKKH 216
P+ ++ T P E+ PE L+ + K+ + VG G+ + ++ + WK
Sbjct: 152 PEAAARATKSPVWMAELTLPEAELRRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTD 211
Query: 217 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPT 268
+ ++V V A ++ L R TGG+V+ ++ +YRG Y P T
Sbjct: 212 EVVRVKVSGTPALNMRLFHEILERKTGGLVI-WRSGTSVSLYRGVAYDVPET 262
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 21/220 (9%)
Query: 116 VRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEIL 175
V L+H +K E + AE K+L KA + ++ E LK E +E DP+ +
Sbjct: 584 VEILRHENLVRKLERKLAFAERKLL----KAERGLAKVEECLKPAEQRE------DPDSI 633
Query: 176 TPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIA 235
T EE F F K+G K K ++ +GRRG++ G + NMHLHWK + +K+IVK + + VK++A
Sbjct: 634 TDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVA 693
Query: 236 AELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYR 289
L +GGI++ I + II+YRGK+Y +P ++ P+ L+++KAL +S + R
Sbjct: 694 LALEAESGGILVSIDKVTKGYAIIVYRGKDYKRPT--MLRPKNLLTKRKALARSIELQRR 751
Query: 290 DGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQN 329
+GL K+I ++ + E LRA+ E + E++ N
Sbjct: 752 EGLL---KHISTMQAKAEQLRAEIEQMEKVTDKGDEELYN 788
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 418 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 477
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 478 MAEDLKKLTGGILLS-RNKDFLVFYRGKNF 506
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 15/235 (6%)
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 201
KL+K+ K ++ E L E +E+ D E ++ EE F F K+G K Y+ +GRRG+
Sbjct: 753 KLKKSEKDLAKVQENL------EPTELPTDLETISDEERFLFRKIGLSMKPYLFLGRRGV 806
Query: 202 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMY 258
+ G I NMHLHWK + +K+IV+ +VK IA L +GG+++ + II+Y
Sbjct: 807 FDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKGYAIIVY 866
Query: 259 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSE 318
RGKNY +P + M P L+R++AL +S A+K +I L++ +EL+ ++ E E
Sbjct: 867 RGKNYMRP--QAMRPENLLTRRQALARSVELQRYEALKHHITDLQERIELVTSELE---E 921
Query: 319 NRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSED-LSDIFETDS 372
+D +V K D SI + E E +P + + ED L D+ DS
Sbjct: 922 MEADKKSEVYKALYSKFDDASILNEDEEGEEEPILKVQYPNSEEDKLEDVPVYDS 976
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE-LARL 241
F ++ R + +GR QG+ M W++ K+ +K EI AE L RL
Sbjct: 575 FRRLARTTPPHFVLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQYTRNEIMAEELKRL 634
Query: 242 TGGIVLEIHEENTIIMYRGKNYAQP 266
TGG +L ++E I+ YRG ++ P
Sbjct: 635 TGGTLLSRNKE-YIVFYRGNDFLPP 658
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 115/184 (62%), Gaps = 7/184 (3%)
Query: 132 RMTAEEKILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKC 190
R A ++I KL A KK ER L K+E K + + +T D E L+ E + + K+G K
Sbjct: 398 RAQATDRIRSKLNLALKKMERAQLELNKVEAKTTPANVTLDKEHLSDGERYMYRKLGLKM 457
Query: 191 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI- 249
K ++ +GRRG++ G + NMHLHWK + +K++VKT S E + IA L +GGI+++I
Sbjct: 458 KAFLLLGRRGVFSGTVENMHLHWKYRELVKILVKT-SLPEAERIAKILENESGGILVDII 516
Query: 250 --HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 307
+ I+MYRGKNY Q P+E + PR L++++AL +S + +++K+I L++E+E
Sbjct: 517 TTSKGQAIVMYRGKNY-QRPSE-LRPRHLLTKRQALKRSLEMQRMESLEKHIRVLKKEIE 574
Query: 308 LLRA 311
++A
Sbjct: 575 TMQA 578
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
+G + + + +GR G+ G++ +H W+ + KV + +K+ +L RLTGG+
Sbjct: 44 LGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGL 103
Query: 246 VLEIHEENTIIMYRGKNYAQP 266
V+ + ++YRGK+Y P
Sbjct: 104 VI-WRSGSAAVVYRGKDYVHP 123
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 110/179 (61%), Gaps = 6/179 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
K+ +KL+ A+KK E+ L K+E + +E PE +T EE F F K+G + K ++ +
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + + +
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
I+++RGK+YA+P + PR LS++KAL +S A+ +I L + ++ L+A+
Sbjct: 674 AIVVFRGKDYARPSK--LRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKKLKAE 730
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 120 KHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPE 178
KH +K E++ AE++I K ER+ L K+E + +E T PE +T E
Sbjct: 556 KHADLVRKLEWKLALAEKRI--------AKAERV---LGKVETALKPTEDTKPPETITDE 604
Query: 179 EHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAEL 238
E F F K+G + K ++ +GRRG++ G I NMHLHWK + +K++VK S +VK A L
Sbjct: 605 ERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSL 664
Query: 239 ARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAV 295
+GG+++ + + + I+++RGK+Y +P ++ PR LS++KAL +S + A+
Sbjct: 665 EVESGGVLVSVDKVSKGYAIVVFRGKDYKRP--SMLRPRNLLSKRKALARSIELQRMEAL 722
Query: 296 KKYIPKLEQELELLRAQ 312
++I KL + + LR++
Sbjct: 723 GRHIEKLNRRVNQLRSE 739
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 29/209 (13%)
Query: 116 VRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE----PKESSEMTHD 171
V L+H +K E + AE K+L K ER GL K+E P E E D
Sbjct: 589 VEILRHENLVRKLERKLAFAERKLL--------KAER---GLAKVEVCLKPAEQRE---D 634
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PE +T EE F F K+G K K ++ +GRRG++ G + NMHLHWK + +K+IVK + + V
Sbjct: 635 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 694
Query: 232 KEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS-- 286
K++A L +GGI++ I + II+YRG++Y +P ++ P+ L+++KAL +S
Sbjct: 695 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPT--MLRPKNLLTKRKALARSIE 752
Query: 287 -KYRDGLRAVKKYIPKLEQELELLRAQAE 314
+ R+GL K+I ++ + + LRA+ E
Sbjct: 753 LQRREGLL---KHISTMQAKAKQLRAEIE 778
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 423 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 482
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 483 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 511
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 128 KEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKM 186
++ +R A ++I K++ A +K+ER + L KI+ K + ++ D E L+ E + + +
Sbjct: 705 RKAKRGQAMDRIRQKMKLALQKKERAMAELAKIDAKTNPTDAPLDKEFLSEAERYMYRQQ 764
Query: 187 GRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIV 246
G K K Y+ +GRRG++ G + NMHLHWK + +K++VK A E ++ A L R +GGI+
Sbjct: 765 GLKHKGYLLLGRRGVFGGTVENMHLHWKHRELVKILVKAPIA-EAQQTAKMLERESGGIL 823
Query: 247 LEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLE 303
++I + II+YRGKNY Q P+E + PR L++++AL +S +++++K+I L
Sbjct: 824 VDIVNTSKGQAIIVYRGKNY-QRPSE-LRPRHLLTKRQALKRSLEVQRMQSLEKHIQILM 881
Query: 304 QELELLRA---QAETRSENRSDAAEDVQNTELDKPDF 337
E+E ++A + E + E ++A + D DF
Sbjct: 882 TEIETMQAGLNKMEEQDELENEAGTQGNLEDFDATDF 918
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE L+ +G + + + +GR G+ G++ +H W+ + KV + +
Sbjct: 322 ELTLPEPELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNM 381
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K+ +L RLTGG+V+ + ++YRGK+Y P
Sbjct: 382 KKAHEDLERLTGGLVI-WRAGSAAVVYRGKDYVHP 415
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 120/209 (57%), Gaps = 29/209 (13%)
Query: 116 VRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIE----PKESSEMTHD 171
V L+H +K E + AE K+L K ER GL K+E P E E D
Sbjct: 558 VEILRHENLVRKLERKLAFAERKLL--------KAER---GLAKVEVCLKPAEQRE---D 603
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PE +T EE F F K+G K K ++ +GRRG++ G + NMHLHWK + +K+IVK + + V
Sbjct: 604 PESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGV 663
Query: 232 KEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS-- 286
K++A L +GGI++ I + II+YRG++Y +P ++ P+ L+++KAL +S
Sbjct: 664 KKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPT--MLRPKNLLTKRKALARSIE 721
Query: 287 -KYRDGLRAVKKYIPKLEQELELLRAQAE 314
+ R+GL K+I ++ + + LRA+ E
Sbjct: 722 LQRREGLL---KHISTMQAKAKQLRAEIE 747
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 392 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 451
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 452 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 480
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 127 KKEYERMTAEE---KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFY 182
K+E ERM + + K+ KL A KK + L K+E + +E D E +T EE F
Sbjct: 618 KQEVERMRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFM 677
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLT 242
F K+G + K ++ +GRRG++ G + NMHLHWK + +K++VK S E K++A L +
Sbjct: 678 FQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKSLEGAKKVAMALEAES 737
Query: 243 GGIVL---EIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYI 299
GGI++ +I + +I+YRGK+Y +P T + P+ L+++KAL +S A+ K+I
Sbjct: 738 GGILVSVDKISKGYAVIVYRGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHI 795
Query: 300 PKLEQELELLRAQAE 314
++ E LRA+ E
Sbjct: 796 EAVQTRSEQLRAEIE 810
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 98/153 (64%), Gaps = 6/153 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
K+ +KL+ A+KK E+ L K+E + +E PE +T EE F F K+G + K ++ +
Sbjct: 400 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 459
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + + +
Sbjct: 460 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 519
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
I+++RGK+YA+P + PR LS++KAL +S
Sbjct: 520 AIVVFRGKDYARPSK--LRPRNLLSKRKALARS 550
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 142 KLRKARKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 200
KL A+ K ++ + L+K+ E E +E+ D E L+ EE F F K+G K ++ +G RG
Sbjct: 646 KLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRG 705
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIM 257
I+ G + NMHLHWK + +K+IVK + +VK IA L +GG+++ + II+
Sbjct: 706 IFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIV 765
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
YRGKNY +P + P+ L++++AL +S A+K +I LE+ ++LL++ E
Sbjct: 766 YRGKNYQRP--HALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPE 820
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 90/159 (56%), Gaps = 27/159 (16%)
Query: 147 RKKEERIVEG---LKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQ 203
RK + EG L++ EP E H + ++G K +N+ VG+RGIY
Sbjct: 106 RKHSSHLTEGKRCLRETEPLSEGEAAH------------YARIGNKNQNFASVGKRGIYG 153
Query: 204 GVILNMHLHWKKHQTLKV-IVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKN 262
GVI N+H +WK H+T+++ + S EE + I AELARL+GGIVL++ E+ T+IM+RGKN
Sbjct: 154 GVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAELARLSGGIVLDVLEDRTVIMFRGKN 213
Query: 263 YAQPPTEIMSPRI-TLSRK---------KALDKSKYRDG 291
Y Q P E+ P + + R+ +ALD YR G
Sbjct: 214 Y-QTPEELYPPTLEAVDRRNADSRHHIQRALDSQVYRLG 251
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 142 KLRKARKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 200
KL A+ K ++ + L+K+ E E +E+ D E L+ EE F F K+G K ++ +G RG
Sbjct: 649 KLAHAKAKLKKTEKALRKVQEDLEPAELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRG 708
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIM 257
I+ G + NMHLHWK + +K+IVK + +VK IA L +GG+++ + II+
Sbjct: 709 IFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIV 768
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
YRGKNY +P + P+ L++++AL +S A+K +I LE+ ++LL++ E
Sbjct: 769 YRGKNYQRP--HALRPKNLLTKRQALARSIELQRHEALKHHISDLEERIKLLKSLPE 823
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 5/150 (3%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+E+ D E +T EE F F ++G K K ++ +GRR ++ G + NMHLHWK + +K+IVK
Sbjct: 757 AELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRELVKIIVKG 816
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
S +VK IA L +GG+++ + + +II+YRGKNY +P +I+ PR L+R++A
Sbjct: 817 KSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRP--QILKPRNLLTRRRA 874
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+ +S A+ +I L Q++ L++Q
Sbjct: 875 MARSIELQRREALNHHISILRQKIWKLKSQ 904
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR +QG+ + W+K +K+ +K + +A E+ +LTG
Sbjct: 563 RLARQTAPHFALGRNREHQGLASAIVKLWEKSTIVKIAIKRGVPNTCNDRMAEEIKKLTG 622
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G+++ ++E II YRG ++ P
Sbjct: 623 GVLISRNKE-YIIFYRGNDFMTP 644
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
DPE +T EE F F K+G + K ++ +GRRG++ G + NMHLHWK + +K+IVK + ++
Sbjct: 641 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQ 700
Query: 231 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
VK+ A L +GG+++ + + + I+++RGK+Y +P T + P+ L+++KAL +S
Sbjct: 701 VKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPST--LRPKNLLTKRKALARSI 758
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAE 314
A+ +I L++ +E LR++ E
Sbjct: 759 ELQRREALYNHISALQRNVEKLRSEIE 785
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE L+ + + KN +G G+ Q V+ + WK + +K+ + +A +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ I L R TGG+V+ ++ +YRG +Y P
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVP 310
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 94/147 (63%), Gaps = 5/147 (3%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
DPE +T EE F F K+G + K ++ +GRRG++ G + NMHLHWK + +K+IVK + ++
Sbjct: 641 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQ 700
Query: 231 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
VK+ A L +GG+++ + + + I+++RGK+Y +P T + P+ L+++KAL +S
Sbjct: 701 VKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPST--LRPKNLLTKRKALARSI 758
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAE 314
A+ +I L++ +E LR++ E
Sbjct: 759 ELQRREALYNHISALQRNVEKLRSEIE 785
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE L+ + + KN +G G+ Q V+ + WK + +K+ + +A +
Sbjct: 217 ELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNM 276
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ I L R TGG+V+ ++ +YRG +Y P
Sbjct: 277 RRIHEILERKTGGLVI-WRSGTSVSLYRGVSYEVP 310
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 201
KL KA + ++ E LK E + D E +T EE F F K+G K K ++ +GRRG+
Sbjct: 638 KLLKAERALAKVEESLKPAEQR------TDLEGITEEERFMFQKLGLKMKAFLLLGRRGV 691
Query: 202 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMY 258
+ G + NMHLHWK + +K++VK + E +++A L +GGI++ +I + +I+Y
Sbjct: 692 FDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVY 751
Query: 259 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
RGK+Y +P T + P+ L+++KAL +S A+ K+I ++ E LRA+ E
Sbjct: 752 RGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIE 805
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 11/176 (6%)
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGI 201
KL KA + ++ E LK E + D E +T EE F F K+G K K ++ +GRRG+
Sbjct: 649 KLLKAERALAKVEESLKPAEQR------TDLEGITEEERFMFQKLGLKMKAFLLLGRRGV 702
Query: 202 YQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMY 258
+ G + NMHLHWK + +K++VK + E +++A L +GGI++ +I + +I+Y
Sbjct: 703 FDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVY 762
Query: 259 RGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAE 314
RGK+Y +P T + P+ L+++KAL +S A+ K+I ++ E LRA+ E
Sbjct: 763 RGKDYKRPTT--LRPKNLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIE 816
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 17/221 (7%)
Query: 125 KKKKEYERMTAEEKILYKLRK----ARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEE 179
KK+K + +T +L L++ A+ K + + L K++ S +E+ D E +T EE
Sbjct: 696 KKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELPTDLETVTDEE 755
Query: 180 HFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELA 239
F ++G K K ++ +GRR ++ G + NMHLHWK + +KV+VK S +VK IA L
Sbjct: 756 RFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLE 815
Query: 240 RLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYRDGLR 293
+GG+++ + + II+YRGKNY P +I+ PR LSR+KAL +S + R+GL
Sbjct: 816 AESGGVLISVDKTTKGYAIILYRGKNYKTP--QILKPRNLLSRRKALARSIELQRREGL- 872
Query: 294 AVKKYIPKLEQELELLRAQ-AETRSENRSDAAEDVQNTELD 333
+I L ++ L++Q + AE +Q E D
Sbjct: 873 --NHHISNLRDKIWKLKSQLVRMQVAGEKPDAELLQTVEAD 911
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR +QG+ + W+K K+ +K + +A E+ +LTG
Sbjct: 548 RLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTG 607
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G++L ++E I+ YRG ++ P
Sbjct: 608 GVLLSRNKE-YIVFYRGNDFITP 629
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 17/221 (7%)
Query: 125 KKKKEYERMTAEEKILYKLRK----ARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEE 179
KK+K + +T +L L++ A+ K + + L K++ S +E+ D E +T EE
Sbjct: 641 KKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELPTDLETVTDEE 700
Query: 180 HFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELA 239
F ++G K K ++ +GRR ++ G + NMHLHWK + +KV+VK S +VK IA L
Sbjct: 701 RFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLE 760
Query: 240 RLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS---KYRDGLR 293
+GG+++ + + II+YRGKNY P +I+ PR LSR+KAL +S + R+GL
Sbjct: 761 AESGGVLISVDKTTKGYAIILYRGKNYKTP--QILKPRNLLSRRKALARSIELQRREGL- 817
Query: 294 AVKKYIPKLEQELELLRAQ-AETRSENRSDAAEDVQNTELD 333
+I L ++ L++Q + AE +Q E D
Sbjct: 818 --NHHISNLRDKIWKLKSQLVRMQVAGEKPDAELLQTVEAD 856
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR +QG+ + W+K K+ +K + +A E+ +LTG
Sbjct: 493 RLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCNDRMAEEIRKLTG 552
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G++L ++E I+ YRG ++ P
Sbjct: 553 GVLLSRNKE-YIVFYRGNDFITP 574
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 18/237 (7%)
Query: 82 KVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILY 141
K V+ +E++EN S+ + ++ K + + K K K +R + +
Sbjct: 471 KAVKNKENAENRSAITASSHSERKHMTFIKDKETIE--KPLLMKAKAAIQRTS------F 522
Query: 142 KLRKA---RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGR 198
KL +A ++K E+++E L+K E + E+ D E +T EE + ++G K K ++ +GR
Sbjct: 523 KLAQALEKKEKAEKLLESLEKDESLQEEEI--DKESITEEERYMLRRIGLKMKPFLLLGR 580
Query: 199 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TI 255
RG++ G + NMHLHWK + +K+I S E + A L +GGI++ + N I
Sbjct: 581 RGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKGYAI 640
Query: 256 IMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
I+YRGKNY++P + + PR L++K+AL +S A+K ++ KL++ + L+ Q
Sbjct: 641 IVYRGKNYSRPDS--LRPRTLLNKKQALKRSIEAQRREALKLHVLKLDKNINELKHQ 695
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT E ++G + K + VG+ G+ +G++ +H W++ + ++V+ + +K
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L R TGG+V+ + II+YRG +Y P
Sbjct: 211 HDILERKTGGLVV-WRSGSKIILYRGIDYKYP 241
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT +E ++GR + +GR QGV + W++ + + + VK ++
Sbjct: 369 LTDDEMTTLKRLGRTLPCHFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRK 428
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A E+ LTGG +L ++E I++YRGK++
Sbjct: 429 MAEEIKYLTGGTLLSRNKE-VIVIYRGKDF 457
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
+P+ +T EE F F K+G + K ++ +GRR ++ G + NMHLHWK + +K+++K S +
Sbjct: 653 EPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDH 712
Query: 231 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
VK IA +L +GG+++ I + + II+YRGK+Y +P ++ P+ L+++KAL +S
Sbjct: 713 VKNIALQLEAESGGVLVSIDKVSKGYAIIVYRGKDYKRP--SLLRPKNLLTKRKALARSI 770
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMEC- 346
A+ K+I ++ ++ L ++ E + E D ++V LD + P+ +
Sbjct: 771 ELQRHEALLKHISAMQSKVGKLNSEIE-QMEKVKDQGDEVLYNTLDS----AYPTDNDSE 825
Query: 347 SENDPTTESL-MASDSEDLSDIFETD 371
EN T E+ SD ED DI +D
Sbjct: 826 DENSDTYEAYDQDSDVEDEDDIMASD 851
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR QG+ + M W++ K+ +K E +A E+ +LTG
Sbjct: 455 RLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIKKLTG 514
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G++L ++ ++ YRGK++ P
Sbjct: 515 GMLLS-RNKDFLVFYRGKSFLSP 536
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 106/177 (59%), Gaps = 6/177 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEP-KESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
K+ KL A KK + L K+E + +E DPE +T EE F F K+G + K ++ +
Sbjct: 488 KLESKLAFAEKKLMKAERALSKVEVFLKPAERQADPESITDEERFMFRKLGLRMKAFLLL 547
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
GRRG++ G + NMHLHWK + +K+I+K + E+VK+IA L +GGI++ + +
Sbjct: 548 GRRGVFDGTVENMHLHWKYRELVKIILKAKNIEQVKKIALALEAESGGILVSVDRVSKGY 607
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
II++RGK+Y +P + P L+++KAL +S A+ K+I L+++++ +R
Sbjct: 608 AIIVFRGKDYQRPSK--LRPGNLLTKRKALARSIEIQRSEALLKHISALQKKVDKIR 662
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 165 SSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIV 223
S T E+ PE L+ + + K+ V V G+ Q V+ ++H WK + ++V V
Sbjct: 94 SKSRTQLAELTLPESELRRLRNLTYQIKSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKV 153
Query: 224 KTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 270
+ A ++ + L R TGG+V+ ++ +YRG +Y P ++
Sbjct: 154 EGAPALNMRRMHEILERKTGGLVI-WRSGTSVSLYRGVSYEDPSVQL 199
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+E+ D E +T EE F F ++G K + ++ +GRR ++ G + NMHLHWK + +K+IV+
Sbjct: 755 AELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIIVRG 814
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
S +VK IA L + G+++ + + + II YRGKNY +P +IM PR L+R++A
Sbjct: 815 KSFAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGKNYRRP--QIMKPRNLLTRRQA 872
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
L +S A+K +I L+ ++ L++Q
Sbjct: 873 LARSIELQRREALKHHISSLQGKIWKLQSQ 902
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR +QG+ M W+K K+ +K + +A E+ +LTG
Sbjct: 561 RLSRQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDRMAEEIKKLTG 620
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G++L ++E I+ YRG ++ P
Sbjct: 621 GVLLSRNKE-YIVFYRGNDFIAP 642
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
+ K + VG G+ Q ++ ++H WK + +K+ + + +K L TGG+V+
Sbjct: 367 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI- 425
Query: 249 IHEENTIIMYRGKNY 263
++++YRG NY
Sbjct: 426 WRSGRSVVLYRGMNY 440
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 113/190 (59%), Gaps = 6/190 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
+I +KL A+ K +R + L KIE + +D E+++ EE F K+G K K Y+P+
Sbjct: 615 RIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPI 674
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
G RG++ GVI NMHLHWK + +K+I K + V+E A L +GG+++ I +
Sbjct: 675 GIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGF 734
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 313
+I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E +++Q
Sbjct: 735 ALIYYRGKNYRRPIS--LRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSQL 792
Query: 314 ETRSENRSDA 323
+++ + S++
Sbjct: 793 TSKNPSYSES 802
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+G+ + +GR +QG+ + W+K K+ VK K
Sbjct: 442 LTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKL 501
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDK 285
+A E+ LTGG++L + + I++YRGK++ P+ + + TL+ ++ L K
Sbjct: 502 MADEVKTLTGGVLL-LRNKYYIVIYRGKDFL--PSSVAA---TLAERQELTK 547
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 506 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 562
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 563 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 622
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+P + P+ LS++ AL +S +++K ++ KL + ++ LR Q
Sbjct: 623 KRPSK--LRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQ 669
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 43 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 102
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 103 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 136
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 333 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 392
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 393 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 446
Query: 291 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 327
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 447 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 491
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 12/186 (6%)
Query: 122 FRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEH 180
FR +K+K + R+ +KL A+ K R + L KIE + + D E++T EE
Sbjct: 542 FRSEKEKLFRRLE------HKLSIAQAKIHRAGKLLSKIEASMVLANPSDDREMITAEER 595
Query: 181 FYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR 240
F ++G K K Y+PVG RG++ GVI NMHLHWK + +K+I K + V+E A L
Sbjct: 596 SVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEY 655
Query: 241 LTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKK 297
+GGI++ I + + +I YRGKNY +P + PR L++ KAL ++ A+ +
Sbjct: 656 ESGGILVAIERVPKGHALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQRHEALSQ 713
Query: 298 YIPKLE 303
+I +LE
Sbjct: 714 HIDQLE 719
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
MG K+ + V + G+ Q + +H W+K + +++ A ++K + R TGG+
Sbjct: 188 MGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGL 247
Query: 246 VLEIHEENTIIMYRGKNYAQP 266
++ + +++YRG NY +P
Sbjct: 248 II-WRAGSVMVVYRGSNYTRP 267
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 379 LTNSELTNLRKLARNLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 438
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 439 MSDEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 474
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 121 HFRYKKKKEYERMTAE---EKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILT 176
H + + K +R + E EK KL A +K+ + L +E +ES +++ D E +T
Sbjct: 521 HIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGIT 580
Query: 177 PEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAA 236
+E + K+G K K ++ +GRRG++ G I NMHLHWK + +K+I +S E ++A
Sbjct: 581 NDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAE 640
Query: 237 ELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 293
L +GGI++ + + II+YRGKNY +P + + P+ LS+++AL +S +
Sbjct: 641 ILEAESGGILVAVEMVSKGYAIIVYRGKNYERP--QCLRPQTLLSKREALKRSVEAQRRK 698
Query: 294 AVKKYIPKLEQELELLRAQ 312
++K ++ KL +E L Q
Sbjct: 699 SLKLHVLKLSNNIEELNRQ 717
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
L P E +G + + +G+ GI +G++ +H W+ + +K+ + S +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L TGG+V+ + I++YRG NY P
Sbjct: 226 HDVLETKTGGLVI-WRSGSKILLYRGVNYQYP 256
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT +E ++GR + +GR QG+ + + W+K + K+ VK E+
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 235 AAE-LARLTGGIVLEIHEENTIIMYRGKNY 263
AE L LTGG ++ +++ I++YRGK++
Sbjct: 438 MAEELKWLTGGTLIS-RDKDFIVLYRGKDF 466
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 101/169 (59%), Gaps = 8/169 (4%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 603 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 659
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 660 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 719
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+P + P+ LS++ AL +S +++K ++ KL + ++ LR Q
Sbjct: 720 KRPSK--LRPKTLLSKRDALKRSLENQRCKSLKVHVLKLSKNIDYLRDQ 766
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 140 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 199
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 200 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 233
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 430 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 490 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 543
Query: 291 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 327
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 544 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 588
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 94/152 (61%), Gaps = 13/152 (8%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D E +T EE + F K+G + ++ +GRRG++ GVI NMHLHWK + +K+I+K
Sbjct: 478 SEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILK- 536
Query: 226 FSAEEVKEIAAELARL----TGGI---VLEIHEENTIIMYRGKNYAQPPTEIMSPRITLS 278
E+ K IA E+A++ +GGI V+ + II+YRGKNY +P + PR L+
Sbjct: 537 ---EKDKAIALEVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNYQRPAE--LRPRSLLT 591
Query: 279 RKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
++KAL +SK +A++ +I KLE+ + LR
Sbjct: 592 KRKALARSKEIQRKKALQLHIEKLEELIMKLR 623
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 173 EILTPEEHFYFL-KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ PE L ++ + N + VG G+ + V+ ++H W+K + +K+ +A +
Sbjct: 77 ELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINM 136
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
K+ EL TGG+V+ I+YRGK Y
Sbjct: 137 KQTHDELETKTGGLVV-WRTGGMAILYRGKGY 167
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 121 HFRYKKKKEYERMTAE---EKILYKLRKARKKEERIVEGLKKIEPKESSEMTH-DPEILT 176
H + + K +R + E EK KL A +K+ + L +E +ES +++ D E +T
Sbjct: 530 HIQTHQMKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGIT 589
Query: 177 PEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAA 236
+E + K+G K K ++ +GRRG++ G I NMHLHWK + +K+I +S E ++A
Sbjct: 590 NDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAE 649
Query: 237 ELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 293
L +GGI++ + + II+YRGKNY +P + + P+ LS+++AL +S +
Sbjct: 650 ILEAESGGILVAVEMVSKGYAIIVYRGKNYERP--QCLRPQTLLSKREALKRSVEAQRRK 707
Query: 294 AVKKYIPKLEQELELLRAQ 312
++K ++ KL +E L Q
Sbjct: 708 SLKLHVLKLSNNIEELNRQ 726
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
L P E +G + + +G+ GI +G++ +H W+ + +K+ + S +K
Sbjct: 166 LPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRT 225
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L TGG+V+ + I++YRG NY P
Sbjct: 226 HDVLETKTGGLVI-WRSGSKILLYRGVNYQYP 256
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK--------TF 226
LT +E ++GR + +GR QG+ + + W+K + K+ VK
Sbjct: 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query: 227 SAEEVKEIAAELA--RLTGGIVLEIHEENTIIMYRGKNY 263
AEE+K + L LTGG ++ +++ I++YRGK++
Sbjct: 438 MAEELKVVGLLLVIKWLTGGTLIS-RDKDFIVLYRGKDF 475
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+E+ D E +T EE F F ++G K + ++ +GRR ++ G + NMHLHWK + +K++V+
Sbjct: 759 AELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDGTVQNMHLHWKHRELVKIVVRG 818
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
S + K IA L + G+++ + + II YRGKNY +P +IM PR L+R++A
Sbjct: 819 KSFAQAKHIAISLEAESEGVLISLDKTTKGYVIIFYRGKNYRRP--QIMKPRNLLTRRQA 876
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
L +S A+K +I L+ ++ L++Q
Sbjct: 877 LARSIELQRREALKHHISSLQGKISKLQSQ 906
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE-IAAELARLTG 243
++ R+ + +GR +QG+ M W+K K+ +K + +A E+ +LTG
Sbjct: 565 RLARQTAPHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDRMAEEIKKLTG 624
Query: 244 GIVLEIHEENTIIMYRGKNYAQP 266
G++L ++E I+ YRG ++ P
Sbjct: 625 GVLLSRNKE-FIVFYRGNDFIAP 646
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
+ K + VG G+ Q ++ ++H WK + +K+ + + +K L TGG+V+
Sbjct: 371 RMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVI- 429
Query: 249 IHEENTIIMYRGKNY 263
++++YRG NY
Sbjct: 430 WRSGRSVVLYRGMNY 444
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 13/208 (6%)
Query: 114 AVVRWLKHFRYKKKKEYERMTA---EEKIL----YKLRKARKKEERIVEGLKKIEPKES- 165
A RW + K+++E + ++ +EKI +KL A+ K R + L KIE
Sbjct: 524 AQARWGRDVTSKEQEEMKEASSRLEKEKIFRRLEHKLSIAQAKIHRAGKLLSKIEASMIL 583
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+ + D E++T EE F ++G K K Y+PVG RG++ GVI NMHLHWK + +K+I K
Sbjct: 584 ANPSDDREMITDEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ 643
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
+ V E A L +GGI++ + + +I YRGKNY +P + PR L++ KA
Sbjct: 644 KTLAFVNETARLLEYESGGILVAVERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKA 701
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLR 310
L ++ A+ ++I +LE ++ ++
Sbjct: 702 LKRAVAMQRHEALSQHIAQLESNMKQMK 729
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 186 MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGI 245
MG ++ + V + G+ Q V +H W+K + +++ A ++K + R TGG+
Sbjct: 191 MGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGL 250
Query: 246 VLEIHEENTIIMYRGKNYAQP 266
++ + +++YRG NY +P
Sbjct: 251 II-WRAGSVMVVYRGNNYTRP 270
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT E K+ R + +GR +QG+ + W+K +K+ VK E+
Sbjct: 382 LTNAELTNLRKLARSLPCHFALGRNRNHQGLASAIIKLWEKSLVVKIAVKRGIQNTNNEL 441
Query: 235 AA-ELARLTGGIVLEIHEENTIIMYRGKNY 263
+ E+ +LTGG +L + + I++YRGK++
Sbjct: 442 MSDEIKKLTGGTLL-LRNKYFIVIYRGKDF 470
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 16/229 (6%)
Query: 119 LKHFRYKKKKEYERMTAEEKIL----YKLRKA---RKKEERIVEGLKKIEPKESSEMTHD 171
+K +KK + +T E + KL A + K E+++ L+ E + E+ +
Sbjct: 482 VKGMNFKKDTKQGMLTEAEAAIKSTSIKLSMALEEKAKAEKLLSELENAESPQEEEI--N 539
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIV-KTFSAEE 230
E +T EE + ++G K ++ +GRRG++ G + NMHLHWK + +K+I K S E+
Sbjct: 540 KEGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLED 599
Query: 231 VKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
V++IA L +GGI++ + N II+YRGKNY++P + + PR L++K+AL +S
Sbjct: 600 VQQIAQTLEAESGGILIAVERVNKSYAIIVYRGKNYSRPAS--LRPRTLLNKKQALKRSI 657
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQ-AETRSENRSDAAEDVQNTELDKP 335
++K ++ KL++ + L+ Q A+ N + D Q ++P
Sbjct: 658 EAQRCESLKLHVLKLDRNINELKHQMAKDMEANSKQTSVDNQQAIQEQP 706
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
VG+ G+ +G++ +H W+ + ++++ + S +K L R TGG+V+ + I
Sbjct: 151 VGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVV-WRSGSKI 209
Query: 256 IMYRGKNYAQP 266
I+YRG +Y P
Sbjct: 210 ILYRGTDYKYP 220
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 192
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 567 ERTNIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 623
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 624 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 683
Query: 253 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 309
+ IIMYRGKNY +P + + P+ L++++AL +S ++K ++ +L + ++ L
Sbjct: 684 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDEL 741
Query: 310 RAQAETR---SENRSDAAEDVQNTELDKPDFGSIPSMMECSEN-DPTTESLMASDSEDLS 365
+ Q +R E S D L + +G+ ++ S+ D + +SL S ++
Sbjct: 742 KHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801
Query: 366 DIFETDSETETEE 378
D F + +++T+E
Sbjct: 802 D-FPSMCDSDTDE 813
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 140 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 198
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 157 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 209
Query: 199 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 258
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 210 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 268
Query: 259 RGKNYAQP 266
RG NY P
Sbjct: 269 RGANYKYP 276
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT +E ++GR + +GR QG+ +M W+K + K+ VK E+
Sbjct: 405 LTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEM 464
Query: 235 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
AE L LTGG +L E I+ YRGK++ P +S I RK + + K
Sbjct: 465 MAEELKNLTGGTLLSRDRE-FIVFYRGKDFLPP---AVSSAIEARRKYGIHRGK 514
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 889 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 948
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 949 VKGRAKGTSVQEVIFKLEQATGAVLVS-QEPSKVILYRG 986
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
Query: 134 TAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNY 193
T + + +L +A ++E+ + L+++E S E+++ EE + K+G + K +
Sbjct: 609 TVAQNMETRLSQALTEKEKAEKLLEELEKASRSSKAETREVISEEERYMLRKVGLQMKPF 668
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH--- 250
+ +GRRG++ G I NMHLHWK + +K+I K S E+V A L +GGI++ +
Sbjct: 669 LLLGRRGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVS 728
Query: 251 EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+ + IIMYRGKNY +P + + P+ L++K AL +S +++K ++ L + ++ LR
Sbjct: 729 KGHAIIMYRGKNYQRPSS--LRPKSLLNKKDALKRSVELQRRKSLKLHVLNLSKNIDYLR 786
Query: 311 AQ 312
Q
Sbjct: 787 GQ 788
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 139 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNM 198
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 199 RRTHEVLERKTGGLVI-WRSGSTIILYRGTNYKYP 232
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENT 254
+GR + GV + H+KKH V +K + V+++ +EL TG +++ E N
Sbjct: 963 IGRNNVITGVAKTIRTHFKKHPLAVVNIKNRADGTPVQQLISELEEATGSVLVS-REPNK 1021
Query: 255 IIMYRG 260
+I+YRG
Sbjct: 1022 VILYRG 1027
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK----TFS 227
P LT E ++ R + +GR QG+ ++ W++ + K+ +K
Sbjct: 449 PPKLTDREMTILRRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCID 508
Query: 228 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+E V E EL LTGG +L E +I++YRGK++
Sbjct: 509 SELVSE---ELKGLTGGTLLSRDNE-SIVLYRGKDF 540
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 12/176 (6%)
Query: 142 KLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKNYVPVG 197
+L A +K+ + V+ L +IE +SEM+ PEI +T EE + K+G K K ++ +G
Sbjct: 545 RLSMALEKKAKAVKLLAEIE---NSEMSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIG 601
Query: 198 RRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---T 254
RRG++ G I NMHLHWK + +K+I K S V E+A L +GGI++ + +
Sbjct: 602 RRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKGYA 661
Query: 255 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
I++YRGKNY +P ++ P LS+++A+ +S ++K ++ +L + + L+
Sbjct: 662 IVVYRGKNYQRP--ALLRPPTLLSKREAMKRSLEAQRRESLKLHVLRLTRNINDLK 715
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
L+ EE ++G K + VG+ GI +G++ +H W++ + +K++ + +K
Sbjct: 158 LSEEELRRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRT 217
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L R TGG+V+ + I++YRG NY P
Sbjct: 218 HDLLERKTGGLVV-WRAGSKIVLYRGVNYIYP 248
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
ILT +E ++GR + +GR QG+ ++ W+K + K+ VK E
Sbjct: 375 ILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASIIKLWEKCEIAKIAVKRGVQNTNSE 434
Query: 234 IAAE-LARLTGGIVLEIHEENTIIMYRGKNY 263
+ AE L RLTGG +L E I++YRGK++
Sbjct: 435 MMAEELKRLTGGTLLSRDRE-FIVLYRGKDF 464
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 160 IEPKESSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQ 217
I E +EM L+ + K K KN + VGR I GV + H+KK+
Sbjct: 846 ISANEDNEMQSSTICLSNRDRLMLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFKKYP 905
Query: 218 TLKVIVKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
V VK + V+E+ +L + TGG+++ E + +I+YRG
Sbjct: 906 LAIVNVKGRAKGTSVQEVVFQLEQATGGVLVS-QEPSKVILYRG 948
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 192
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 567 ERTNIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 623
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 624 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 683
Query: 253 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 309
+ IIMYRGKNY +P + + P+ L++++AL +S ++K ++ +L + ++ L
Sbjct: 684 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDEL 741
Query: 310 RAQAETR---SENRSDAAEDVQNTELDKPDFGSIPSMMECSEN-DPTTESLMASDSEDLS 365
+ Q +R E S D L + +G+ ++ S+ D + +SL S ++
Sbjct: 742 KHQLVSRIKDKETNSKQLVDKSRLHLARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801
Query: 366 DIFETDSETETEE 378
D F + +++T+E
Sbjct: 802 D-FPSMCDSDTDE 813
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 140 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 198
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 157 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 209
Query: 199 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 258
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 210 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 268
Query: 259 RGKNYAQP 266
RG NY P
Sbjct: 269 RGANYKYP 276
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT +E ++GR + +GR QG+ +M W+K + K+ VK E+
Sbjct: 405 LTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKLWEKCEIAKIAVKRGVQNTNSEM 464
Query: 235 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
AE L LTGG +L E I+ YRGK++ P +S I RK + + K
Sbjct: 465 MAEELKNLTGGTLLSRDRE-FIVFYRGKDFLPP---AVSSAIEARRKYGIHRGK 514
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 889 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 948
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 949 VKGRAKGTSVQEVIFKLEQATGAVLVS-QEPSKVILYRG 986
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 114 AVVRWLKHFRYKKK---KEYERMTAEEKIL----YKLRKARKKEERIVEGLKKIEPKES- 165
A RW + K++ KE + +EK+ +KL A+ K R L KIE
Sbjct: 529 AQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVL 588
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+ + D E++T EE F ++G + K Y+PVG RG++ GVI NMHLHWK + +K+I K
Sbjct: 589 ANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ 648
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
+ V+E A L +GGI++ I +I YRGKNY +P + PR L++ KA
Sbjct: 649 KTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPIN--IRPRNLLTKAKA 706
Query: 283 LDKSKYRDGLRAVKKYIPKLEQEL 306
L ++ A+ ++I +LE +
Sbjct: 707 LKRAVAMQRHEALSQHIAELENNI 730
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE ++G ++ + V + G+ Q V +H W+K + +++ A ++K
Sbjct: 188 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 247
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ R TGG+++ + +++YRG NY +P
Sbjct: 248 VERRTGGLII-WRSGSVMVVYRGSNYKRP 275
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 387 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 446
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 447 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 482
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 140/277 (50%), Gaps = 36/277 (12%)
Query: 114 AVVRWLKHFRYKKKKEYERMTAE----------EKILYKLRKARKKEERIVEGLKKIE-- 161
A RW + +E+E+M E ++I +KL A+ K+ R L KIE
Sbjct: 555 AQARWGREI---SAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRAERLLAKIEAS 611
Query: 162 --PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 219
P S+ D E +T EE F F ++G + K Y+ +G RG++ GVI NMHLHWK + +
Sbjct: 612 MIPAGPSD---DQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELV 668
Query: 220 KVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRIT 276
K+I K + V++ A L +GGI++ I + +I YRGKNY +P + + PR
Sbjct: 669 KLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVS--LRPRNL 726
Query: 277 LSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKPD 336
L++ KAL +S A+ ++I +LE+ +E ++ + +++ +D +TE
Sbjct: 727 LTKAKALKRSVAMQRHEALSQHISELERTIEQMKMEI---GDSKDAEDKDSWSTE----G 779
Query: 337 FGSIPSMMECSENDPTTESLMASDSEDLSDIFETDSE 373
G + E + S M SD++D+ DI D E
Sbjct: 780 HGQFDQVSESEDE----ASGMDSDADDVEDIDWKDDE 812
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
++G + + V + GI Q V+ +H W+K + +++ A ++K + R TGG
Sbjct: 224 RLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGG 283
Query: 245 IVLEIHEENTIIMYRGKNYAQPP 267
+V + ++++RG NY PP
Sbjct: 284 LVT-WRSGSVMVVFRGTNYEGPP 305
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ + + +GR +QG+ + W+K +K+ VK K
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI---MSPRITLSRKKALDKSKYRD 290
+A E+ LTGG++L + + I++YRGK++ PT + +S R L++ + + K R
Sbjct: 472 MAEEIKNLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAAALSEREELTKHIQVVEEKVRT 528
Query: 291 G 291
G
Sbjct: 529 G 529
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 24/236 (10%)
Query: 86 KQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERM--TAEEKILYKL 143
K E+ E++S+ D + + + G H +++K E E T + + +L
Sbjct: 554 KPETEESTSTQDASELKMTSDASVNG---------HECHEEKNEGETSLNTVAQNVEIRL 604
Query: 144 RKA---RKKEERIVEGLKKI-EPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
+A ++K E+++E L+K +P ++ H ++ EE + K+G + K ++ +GRR
Sbjct: 605 SQAIVEKEKAEKLLEELEKASQPSKAETREH----ISDEERYMLRKIGLQMKPFLLLGRR 660
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTII 256
G++ G I NMHLHWK + +K+I K S ++V+ A L +GGI++ + + + II
Sbjct: 661 GVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKGHAII 720
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
MYRGKNY +P T + P+ L+++ AL +S +++K ++ L + ++ LR Q
Sbjct: 721 MYRGKNYHRPST--LRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNIDYLRGQ 774
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 137 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNM 196
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 197 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 230
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 30/142 (21%)
Query: 148 KKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP------------ 195
K + R+ + +S + D EI+ P + K+ KC Y+P
Sbjct: 870 KYQNRLSSAIACHSDNDSESYSRDVEIVKPCQALDEPKLDEKCTPYLPFRTAPLSNRERL 929
Query: 196 ----------------VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVKEIAAEL 238
+GR + GV + H+KKH V +K + V+++ +EL
Sbjct: 930 MLRKQALKMKKRPVLAIGRNNVITGVAKTIQTHFKKHPLAIVNIKNRADGTPVQQLISEL 989
Query: 239 ARLTGGIVLEIHEENTIIMYRG 260
R TG +++ E N +I+YRG
Sbjct: 990 ERATGSVLVS-REPNKVILYRG 1010
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK----TFS 227
P LT E ++ R + +GR QG+ ++M W++ + K+ +K
Sbjct: 439 PSKLTDREMTILRRLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGAYCID 498
Query: 228 AEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 270
+E V E EL LTGG +L + +I+ YRGK++ P +
Sbjct: 499 SELVSE---ELKGLTGGTLLS-RDNKSIVFYRGKDFLSPAVSL 537
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 114 AVVRWLKHFRYKKK---KEYERMTAEEKIL----YKLRKARKKEERIVEGLKKIEPKES- 165
A RW + K++ KE + +EK+ +KL A+ K R L KIE
Sbjct: 332 AQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVL 391
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+ + D E++T EE F ++G + K Y+PVG RG++ GVI NMHLHWK + +K+I K
Sbjct: 392 ANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ 451
Query: 226 FSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
+ V+E A L +GGI++ I +I YRGKNY +P + PR L++ KA
Sbjct: 452 KTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPIN--IRPRNLLTKAKA 509
Query: 283 LDKSKYRDGLRAVKKYIPKLEQEL 306
L ++ A+ ++I +LE +
Sbjct: 510 LKRAVAMQRHEALSQHIAELENNI 533
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 190 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 249
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 250 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 285
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 102/169 (60%), Gaps = 8/169 (4%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+++ E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 608 KERAEKLLEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 664
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 665 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 724
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+P + P+ LS++ AL +S +++K ++ KL + ++ L+ Q
Sbjct: 725 QRPSK--LRPKTLLSKRDALKRSVENQRCKSLKVHVLKLSKNIDYLKDQ 771
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 142 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 201
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 202 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYKYP 235
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 435 PPKLTDREMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 494
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 270
E I E+ LTGG +L +E +I+ YRGK++ P +
Sbjct: 495 SELITEEIKDLTGGTLLSRDKE-SIVFYRGKDFLPPAVSL 533
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 13/204 (6%)
Query: 114 AVVRWLKHFRYKKK---KEYERMTAEEKIL----YKLRKARKKEERIVEGLKKIEPKES- 165
A RW + K++ KE + +EK+ +KL A+ K R L KIE
Sbjct: 532 AQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEASMVL 591
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
+ + D E++T EE F ++G + K Y+PVG RG++ GVI NMHLHWK + +K+I K
Sbjct: 592 ANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQ 651
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
+ V+E A L +GGI++ I + +I YRGKNY +P + PR L++ KA
Sbjct: 652 KTLPFVEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKA 709
Query: 283 LDKSKYRDGLRAVKKYIPKLEQEL 306
L ++ A+ ++I +LE +
Sbjct: 710 LKRAVAMQRHEALSQHIAELENNI 733
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE ++G ++ + V + G+ Q V +H W+K + +++ A ++K
Sbjct: 191 EELRRLRRLGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHEL 250
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ R TGG+++ + +++YRG NY +P
Sbjct: 251 VERRTGGLII-WRSGSVMVVYRGSNYKRP 278
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ R + +GR +QG+ + W+K +K+ VK K
Sbjct: 390 LTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKL 449
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
++ E+ LTGG +L + + I++YRGK++ PT + +
Sbjct: 450 MSEEIKNLTGGTLL-LRNKYYIVIYRGKDFL--PTSVAA 485
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 111/188 (59%), Gaps = 6/188 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
+I +KL A+ K +R + L KIE + +D E+++ EE F K+G K K Y+P+
Sbjct: 615 RIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPL 674
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN--- 253
G RG++ GVI NMHLHWK + +K+I K + V++ A L +GG+++ I +
Sbjct: 675 GIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYESGGVLVAIEKVPKGF 734
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 313
+I YRGKNY +P + + PR L++ KAL +S A+ ++I +LE+ +E ++++
Sbjct: 735 ALIYYRGKNYRRPIS--LRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQMQSEL 792
Query: 314 ETRSENRS 321
+++ + S
Sbjct: 793 TSKTPSYS 800
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+G+ + +GR +QG+ + W+K K+ VK K
Sbjct: 442 LTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKL 501
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDK 285
+A E+ LTGG++L + + I++YRGK++ P+ + + TL+ ++ L K
Sbjct: 502 MADEVKALTGGVLL-LRNKYYIVIYRGKDFL--PSSVAA---TLAERQELTK 547
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 200
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 361 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 411
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 412 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 471
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 472 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 524
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 677 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 736
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 737 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 774
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 200
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 361 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 411
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 412 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 471
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 472 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 524
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 677 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 736
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 737 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 774
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 200
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 555 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 605
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 665
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 666 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 718
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 871 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 930
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 931 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 968
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
D E++T EE F ++G K K Y+PVG RG++ GVI NMHLHWK + +K+I K +
Sbjct: 43 DREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAF 102
Query: 231 VKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
V+E A L +GGI++ I + + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 103 VEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAV 160
Query: 288 YRDGLRAVKKYIPKLEQELELLR 310
A+ ++I +LE ++ ++
Sbjct: 161 AMQRHEALSQHIDQLEINMKQMK 183
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 200
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 591 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 641
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 642 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 701
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 702 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 754
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ R + +GR QG+ +M W++ + KV +K AE +
Sbjct: 412 PPRLTDREMTILRRLARPLPYHYALGRSSNLQGLAASMIKLWERCEVAKVAIKR-GAENI 470
Query: 232 KE--IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 270
I+ +L LTGG +L E +I+ YRGK++ PT +
Sbjct: 471 DSDLISEKLKGLTGGTLLSRDNE-SIVFYRGKDFL--PTAV 508
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 907 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 966
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 967 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 1004
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 116/216 (53%), Gaps = 25/216 (11%)
Query: 114 AVVRWLKHFRYKKKKEYERMTAE----------EKILYKLRKARKKEERIVEGLKKIE-- 161
A RW + +E+E+M E ++I +KL A+ K+ R L KIE
Sbjct: 555 AQARWGREI---SAEEHEKMIEEASRAKSARVVKRIEHKLALAQAKKLRPERLLAKIEAS 611
Query: 162 --PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 219
P S+ D E +T EE F F ++G + K Y+ +G RG++ GVI NMHLHWK + +
Sbjct: 612 MIPAGPSD---DQETITDEERFMFRRLGLRMKAYLLLGVRGVFDGVIENMHLHWKHRELV 668
Query: 220 KVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRIT 276
K+I K + V++ A L +GGI++ I + +I YRGKNY +P + + PR
Sbjct: 669 KLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYALIYYRGKNYRRPVS--LRPRNL 726
Query: 277 LSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
L++ KAL +S A+ ++I +LE+ +E ++ +
Sbjct: 727 LTKAKALKRSVAMQRHEALSQHISELERTIEQMKME 762
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
++G + + V + GI Q V+ +H W+K + +++ A ++K + R TGG
Sbjct: 224 RLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGG 283
Query: 245 IVLEIHEENTIIMYRGKNYAQPP 267
+V + ++++RG NY PP
Sbjct: 284 LV-TWRSGSVMVVFRGTNYEGPP 305
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ + + +GR +QG+ + W+K +K+ VK K
Sbjct: 412 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKL 471
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI---MSPRITLSRKKALDKSKYRD 290
+A E+ LTGG++L + + I++YRGK++ PT + +S R L++ + + K R
Sbjct: 472 MAEEIKNLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAAALSEREELTKHIQVVEEKVRT 528
Query: 291 G 291
G
Sbjct: 529 G 529
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 103/175 (58%), Gaps = 20/175 (11%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDP------EILTPEEHFYFLKMGRKCKNYVPVGRRG 200
++K E+++E L EM+ +P E+++ EE + K+G K K+++ +GRRG
Sbjct: 555 KEKTEKLIEEL---------EMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRG 605
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
++ G + NMHLHWK + +K+I K + ++V+ A L +GGI++ + + + II+
Sbjct: 606 VFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIII 665
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
YRGKNY +P T + P+ L++K AL +S +++K ++ L + ++ L+ Q
Sbjct: 666 YRGKNYQRPST--LRPKSLLNKKDALKRSVEYQRYKSLKLHVLNLSKNIDYLKDQ 718
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ G + +N + VG+ G+ +G++ +H W+ + +K+ SA +
Sbjct: 138 ELALPRDELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNM 197
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K L R TGG+V+ +TII+YRG +Y P
Sbjct: 198 KRTHEILERKTGGLVI-WRSGSTIILYRGTDYKYP 231
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
SS++ L+ E K K K + VGR + GV + H+KKH V
Sbjct: 871 SSQLPSAAAPLSNRERLMLRKQALKMKKRPVLAVGRNNVITGVAKAIKTHFKKHPLAIVN 930
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
+K + ++++ +EL TG +++ E N +I+YRG
Sbjct: 931 IKNRADGTPIQQLISELEEATGSVLVS-REPNKVILYRG 968
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 100/177 (56%), Gaps = 6/177 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
+I +KL A+ K+ R + L KIE S D E +T EE F ++G + Y+P+
Sbjct: 313 RIEHKLGVAQAKKLRAEKLLSKIEASMILSSPDDDQETITDEERVMFRRVGLRMTAYLPM 372
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EEN 253
G RG++ GV+ NMHLHWK + +K+I K + V+E A L +GGI++ I +
Sbjct: 373 GIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGY 432
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
++ YRGKNY +P + PR L++ KAL +S A+ ++I +LEQ +E ++
Sbjct: 433 ALVYYRGKNYRRPIA--LRPRNLLTKAKALKRSVAMQRHEALSQHISELEQNIEQMK 487
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ + + +GR +QG+ + + W+K +K+ VK K
Sbjct: 141 LTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKL 200
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEI 270
+A E+ LTGG++L + + I++YRGK++ P +
Sbjct: 201 MAEEIGNLTGGVLL-LRNKYFIVIYRGKDFLPPSVAV 236
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 103/177 (58%), Gaps = 6/177 (3%)
Query: 138 KILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
+I +K+ A+ K+ R + L KIE + +D E +T EE F K+G + K Y+P+
Sbjct: 551 QIEHKIFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKPYLPL 610
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EEN 253
G RG++ GV+ NMHLHWK + +K++ K + V++ A L +GGI++ I +E
Sbjct: 611 GIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKVSKEF 670
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+I YRGKNY +P T + PR L++ KAL + A+ ++I +LE+ +E ++
Sbjct: 671 ALIYYRGKNYKRPIT--LRPRNLLTKGKALKRHVAMQRHEALSQHITELEKTIEQMK 725
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT E K+ + + VGR +QG+ + W+K K+ VK E+
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFAVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNEL 437
Query: 235 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
AE L LTGG +L + + I++YRGK++ PT + +
Sbjct: 438 MAEELKMLTGGTLL-LRNKYFIVIYRGKDFV--PTSVAA 473
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
+KL KK ER + L K+ S SE + D E+LT EE F ++GRK V +GRR
Sbjct: 542 WKLSILNKKIERSNQALAKLRSSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGRR 601
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
GI+ GVI +H HWK + +KVI K A ++ A L TGGI++ + + T II
Sbjct: 602 GIFDGVIEEIHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAII 661
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P S L++++AL +S
Sbjct: 662 LYRGKNYRRPAKSSFSN--LLTKREALRRS 689
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 363 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKVGIQNTNNEQ 422
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG V+ + ++ +I+YRGK++
Sbjct: 423 MAWNLKHLTGGTVI-LRNKDFVILYRGKDF 451
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 82 KVVEKQESSENSSSADGAGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAE----- 136
K ++ S E+ S+A +A+ + R + +E ERM E
Sbjct: 428 KALDSTPSGEDESTAQAGSLAEFYVAQACWGRDI----------STEERERMMQEVAKAK 477
Query: 137 -----EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKC 190
+KI KL A+ K R + L KIE +D E +T EE F +G +
Sbjct: 478 NAKLVKKIECKLAVAQAKRLRAEKLLAKIEASLLPVGPDYDKETITDEERVMFRSVGLRM 537
Query: 191 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH 250
K Y+P+G RG++ GVI NMHLHWK + +K+I K + V++ A L +GGI++ I
Sbjct: 538 KAYLPLGIRGVFDGVIENMHLHWKHRELVKLITKQKTLAFVEDTARLLEYESGGILVAID 597
Query: 251 EEN---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELE 307
+ ++I YRGKNY +P T + PR L++ KAL +S A+ +++ +L +++E
Sbjct: 598 KVPKGFSLIYYRGKNYRRPMT--LRPRNLLTKAKALQRSVVMQRHEALSQHVTELGEKIE 655
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 114 AVVRWLKHFRYKKKKEYERMTAE----------EKILYKLRKARKKEERIVEGLKKIEPK 163
A RW R +E+ERM E ++I +K+ A K R L KIE
Sbjct: 552 AQARW---GRDVSSEEHERMIKEATKAKNVKLVKQIEHKISLAANKLHRAERLLAKIE-- 606
Query: 164 ESSEMT-----HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 218
S M +D E +T EE F ++G + K Y+ +G RG++ GVI NMHLHWK +
Sbjct: 607 --SSMVPVGPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHREL 664
Query: 219 LKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRI 275
+K++ K + V++ A L +GGI++ I +E II YRGKNY +P T + PR
Sbjct: 665 VKLVTKQKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLT--LRPRN 722
Query: 276 TLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
L++ KAL +S A+ +I +LE +E ++ +
Sbjct: 723 LLTKAKALKRSVAMLRHEALSNHITELETTIEQMKQE 759
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Query: 170 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 229
+D E +T EE F K+G + K Y+P+G RG++ GV+ NMHLHWK + +K++ K +
Sbjct: 584 YDQETITDEERVMFRKVGLRMKPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVA 643
Query: 230 EVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
V++ A L +GGI++ I +E +I YRGKNY +P T + PR L++ KAL +
Sbjct: 644 FVEDTARLLEYESGGILVAIEKVSKEFALIYYRGKNYKRPIT--LRPRNLLTKGKALKRH 701
Query: 287 KYRDGLRAVKKYIPKLEQELELLR 310
A+ ++I +LE+ +E ++
Sbjct: 702 VAMQRHEALSQHITELEKTIEQMK 725
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT E K+ + + +GR +QG+ + W+K K+ VK E+
Sbjct: 378 LTNAEMTNLRKLAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNEL 437
Query: 235 AAE-LARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
AE L LTGG +L + + I++YRGK++ PT + +
Sbjct: 438 MAEELKMLTGGTLL-LRNKYFIVIYRGKDFV--PTSVAA 473
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 234 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQ 118
Query: 291 GLRAVKKYIPKLEQ-----ELELLRAQAETRSENRSDAAEDVQNT 330
A+ ++I +LE +L+L E + E+ SD+ + N
Sbjct: 119 RHEALSQHIDQLESNIKQMKLDLGIEDYEEQDEDSSDSENEYDNA 163
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+ K E+++E L+K P +E+ E ++ +E + K+G K K ++ +GRRG++ G I
Sbjct: 596 KAKAEKLIEELEKASPLSKAEVR---ETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTI 652
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
NMHLHWK + +K+I K E+V+ A L +GGI++ ++ + + II+YRGKNY
Sbjct: 653 ENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 712
Query: 264 AQP----PTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELL 309
+P P ++S R L K++L+ + + L ++ Y P +E E+L
Sbjct: 713 KRPSKLRPKTLLSKRDAL--KRSLENQRCKVWLISLNFYDPFVEILFEIL 760
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 133 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 192
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 193 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 226
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 423 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 482
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
E I E+ LTGG +L ++ +I+ YRGK++ P + + +++ L S
Sbjct: 483 SELITEEVKELTGGTLLS-RDKESIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 536
Query: 291 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 327
+++ +P K+ ++ + +R + + +ENR+ + V
Sbjct: 537 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAGSLNTV 581
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 9/156 (5%)
Query: 164 ESSEMTHDPE----ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTL 219
E SEM+ PE +T EE + K+G K K ++ +G RG++ G I NMHLHWK + +
Sbjct: 568 EKSEMSQQPEKDKEGITEEERYMLRKIGLKMKPFLLMGERGVFDGTIENMHLHWKYRELV 627
Query: 220 KVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYAQPPTEIMSPRIT 276
K+I K S + V+ +A L +GGI++ + + II+YRGKNY +P + P
Sbjct: 628 KIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKGYAIILYRGKNYTRP--ACLRPPTL 685
Query: 277 LSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
LS+++A+ +S ++K ++ +L ++ L+ Q
Sbjct: 686 LSKRQAMKRSLEAQRRESLKLHVLRLTSNIDHLKLQ 721
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P E L+ +G K + VG+ GI +G++ +H W++ + +K++ + +
Sbjct: 159 ELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNM 218
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
K L R TGG+V+ + I++YRG +Y P
Sbjct: 219 KRTHDLLERKTGGLVV-WRVGSKIVLYRGADYKYP 252
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT +E ++GR + +GR +QG+ ++ W+K + K+ VK E+
Sbjct: 381 LTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQNTNSEL 440
Query: 235 AA-ELARLTGGIVLEIHEENTIIMYRGKNY 263
A EL LTGG +L + I++YRGK++
Sbjct: 441 MAQELKWLTGGTLLS-RDREFIVLYRGKDF 469
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 175 LTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEV 231
L+ + K K KN + VGR I GV + H+++H V VK + V
Sbjct: 867 LSNRDRLLLRKQALKMKNRPVLAVGRSNIVTGVAKTIKAHFQRHPFAIVHVKGRAKGTSV 926
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+E+ ++L TG +++ E + +I+YRG +P
Sbjct: 927 QEVVSKLEEATGAVLVS-QEPSKVILYRGWGAGEP 960
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEI----LTPEEHFYFLKMGRKCKN 192
E+ KL A +K+ER + L ++E +++ PEI +T EE + K+G + K
Sbjct: 942 ERTSIKLSMALEKKERAEKLLAELE---EAQIPQQPEIDKEGITEEERYMLRKVGLRMKP 998
Query: 193 YVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
++ +GRRGI+ G + NMHLHWK + +K+I S E++ +A L +GGI++ +
Sbjct: 999 FLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERV 1058
Query: 253 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+ IIMYRGKNY +P + + P+ L++++A+ +S
Sbjct: 1059 SKGYAIIMYRGKNYKRPAS--LRPQTLLNKREAMKRS 1093
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 140 LYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLK-MGRKCKNYVPVGR 198
++LRK K+E+++V KE E+ PEE LK +G + + + VG+
Sbjct: 349 FHELRKEVKREKKLVR-------KEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGK 401
Query: 199 RGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMY 258
GI +G++ +H W++ + +K+ + +K L R TGG+V+ + II+Y
Sbjct: 402 AGITEGIVNGIHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVI-WRSGSYIILY 460
Query: 259 RGKNYAQP 266
RG NY P
Sbjct: 461 RGANYKYP 468
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 165 SSEMTHDPEILTPEEHFYFLKMGRKCKN--YVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
S+EM L+ E K + K + VGR I GV + H++KH V
Sbjct: 1244 SNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGRSNIVTGVAKTIKAHFQKHPLAIVN 1303
Query: 223 VKTFS-AEEVKEIAAELARLTGGIVLEIHEENTIIMYRG 260
VK + V+E+ +L + TG +++ E + +I+YRG
Sbjct: 1304 VKGRAKGTSVQEVVFKLEQATGAVLVS-QEPSKVILYRG 1341
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 24/250 (9%)
Query: 77 RHYIEKVVEKQESSENSSSADGAGVAKVKRKKLKGK-----RAVVRWLKHFRYKKKKEYE 131
R + K ++ E S+S + A + + K L G A RW + +E E
Sbjct: 500 RQEVTKQIQDVEERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDI---STEERE 556
Query: 132 RMTAE----------EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEH 180
+M E ++ +KL A+ K+ R L KIE S D E ++ EE
Sbjct: 557 KMIEEASKAKTARLVKRTEHKLAIAQAKKLRAESLLSKIETTMVPSGPDFDQETISEEER 616
Query: 181 FYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR 240
F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V++ A L
Sbjct: 617 VMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEY 676
Query: 241 LTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKK 297
+GG+++ I + +I YRGKNY +P + + PR L++ KAL +S A+ +
Sbjct: 677 ESGGVLVAIERVPKGFALIYYRGKNYRRPIS--IRPRNLLTKAKALKRSVAMQRHEALSQ 734
Query: 298 YIPKLEQELE 307
+I +LE+ +E
Sbjct: 735 HIFELEKNIE 744
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 185 KMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGG 244
+MG + + + + GI V+ N+H W+K + +++ A ++K + R TGG
Sbjct: 211 RMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGG 270
Query: 245 IVLEIHEENTIIMYRGKNYAQPPTEI 270
+V+ + ++++RG NY PP+++
Sbjct: 271 LVI-WRAGSVMVVFRGTNYQGPPSKL 295
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ + + +GR +QG+ + + W+K K+ VK K
Sbjct: 400 LTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKL 459
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG++L + + I+++RGK++
Sbjct: 460 MADELKMLTGGVLL-LRNKYYIVIFRGKDF 488
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 7/226 (3%)
Query: 90 SENSSSADGAGV-AKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARK 148
++NS + G G+ ++ + + K +++K T+ K KL A +
Sbjct: 493 TDNSPATTGQGLKLEINENGPTNESQSITGWKKIVSERRKLMSSETSMRKTSIKLSIALE 552
Query: 149 KEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVIL 207
K+ + E L K+E +E + D E +T EE + K+G + K ++ +GRRG++ G +
Sbjct: 553 KKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVE 612
Query: 208 NMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNYA 264
NMHLHWK + +K+I S + V ++A L +GGI++ + II++RGKNY
Sbjct: 613 NMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNYK 672
Query: 265 QPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+P + P L++K+AL +S +++K ++ KL Q +E L+
Sbjct: 673 RPSR--LRPESLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEELK 716
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT EE +G + K + VG+ GI +G++ +H +W++ + +K+ + +K
Sbjct: 164 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEYWRRSEVVKIACEDLCRLNMKRT 223
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L R TGGIV+ + II+YRG NY P
Sbjct: 224 HDLLERKTGGIVV-WRSGSKIILYRGPNYIYP 254
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 88/146 (60%), Gaps = 8/146 (5%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRG 200
+ +RK K EE + + K ++P+E SE D E +T EE + ++G K K ++ +GRRG
Sbjct: 407 FAIRKKEKAEEALSKVEKLMKPREPSE---DRETITEEERYTLQRVGLKMKAFLLLGRRG 463
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
+Y G+I NMHLHWK + +KV+ K ++++ A + +GGI++ I+ + +
Sbjct: 464 VYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLY 523
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKAL 283
YRGKNY +P E + P L+++KAL
Sbjct: 524 YRGKNYRRP--EELRPHNLLTKRKAL 547
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E++ P+ L+ M K + V + GI + V+ +H W+ + +K+ A +
Sbjct: 30 ELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNM 89
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 281
+++ EL + TGG+V+ +++YRGK+YA PP E P ++S+ K
Sbjct: 90 RKVHEELEKRTGGLVI-WRAGTALVIYRGKDYAGPPKERWIPTESVSKPK 138
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
L+ +E +++ R+ + R QG+ M W+K + KV +K + + + +
Sbjct: 227 LSDKEFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 286
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPP 267
+A EL RLTG ++L E+ +I YRGK++ P
Sbjct: 287 MADELKRLTGCVLLG-REKTHMIFYRGKDFLPAP 319
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P S L++++AL +S
Sbjct: 649 LYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
+KL KK ER + L K+ S SE + D E LT EE F ++GRK V +GRR
Sbjct: 529 WKLSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRR 588
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
GI+ GVI +H HWK + +KVI K ++ A+ L TGGI++ + + T II
Sbjct: 589 GIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAII 648
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P S L++++AL +S
Sbjct: 649 LYRGKNYRRPAKSSFSN--LLTKREALRRS 676
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQ 411
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG V+ + ++ II+YRGK++
Sbjct: 412 MAWNLKHLTGGTVI-LRNKDFIILYRGKDF 440
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 147 RKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+ K E+++E L E + E+ D E ++ EE + ++G K ++ +GRRG++ G +
Sbjct: 537 KAKAEKLLEKLINAESPQEQEI--DKEGISKEEKYMLRRIGLMMKPFLLLGRRGVFDGTV 594
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNY 263
NMHLHWK + +K+I S EEV +IA L +GGI++ + II+YRGKNY
Sbjct: 595 ENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAESGGILVAVERVRKGFAIIVYRGKNY 653
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+ P + P+ L++++AL +S ++K I L++E+ L+ Q
Sbjct: 654 SVP--VCLRPQTLLNKRQALKRSIEAQRRESLKLRILTLDKEINELKLQ 700
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT +E ++G+ + +GR QG+ + W++ + +K+ VK K
Sbjct: 369 LTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNTSSKI 428
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLR 293
+A EL LTGGI+L + + YRGK+Y P + S I R + K K+ + L
Sbjct: 429 MAKELKHLTGGILLS-RDREFFVFYRGKDYL--PAAVSSA-IKKQRNIGMYKLKFGNSLS 484
Query: 294 AVKKYIPK-----LEQELELLRAQAETRSENRSDAAEDVQNTEL 332
A PK E++ + Q +T+ + A E ++ T +
Sbjct: 485 ATVTPNPKDGTIECNSEVKGMNFQKDTKQRMLTKAEEAIKRTSI 528
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 191 KNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH 250
K V + + GI + ++ +H WK+ + ++V + S ++++ L R TGG+V+
Sbjct: 165 KKKVRLAKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVV-WR 223
Query: 251 EENTIIMYRGKNYAQP 266
II+YRG +Y P
Sbjct: 224 SGTKIILYRGADYKYP 239
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 175 LTPEEHFYFLKMGRKCKNYV-PVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFS-AEEVK 232
L+ +E K K K V +G+ I GV+ + H++KH V VK + V+
Sbjct: 866 LSTKERLLLRKQALKIKQPVLAIGKSNIVSGVVQTIKAHFEKHPLAVVNVKGRAKGTSVQ 925
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRG 260
E+ +L + TG +++ E + II+YRG
Sbjct: 926 ELVFKLEQETGALLVS-REPSNIILYRG 952
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 10/146 (6%)
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 234 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRAVAMQ 118
Query: 291 GLRAVKKYIPKLE-----QELELLRA 311
A+ ++I +LE +L+LLR
Sbjct: 119 RHEALSQHIDQLESNIKQMKLDLLRT 144
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 148 KKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
KK ER E L K+ SE + D E+LT EE F K+G K +V +GRRGI+ GVI
Sbjct: 551 KKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVI 610
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
+H HWK + +KVI K A ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 611 EEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
Query: 264 AQPPTEIMSPRITLSRKKALDKS 286
+P SP L++++AL +S
Sbjct: 671 HRPTKS--SPSNLLTKREALRRS 691
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 148 KKEERIVEGLKKIEPKESSEMTH-DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
+K+ + E L K+E +E + D E +T EE + K+G + K ++ +GRRG++ G +
Sbjct: 573 RKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTV 632
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN---TIIMYRGKNY 263
NMHLHWK + +K+I S + V ++A L +GGI++ + II++RGKNY
Sbjct: 633 ENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNY 692
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+P + P L++K+AL +S +++K ++ KL Q +E L+
Sbjct: 693 KRPSR--LRPESLLNKKEALKRSIEAQRRKSLKLHVLKLTQNVEELK 737
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT EE +G + K + VG+ GI +G++ +H W++ + +K+ + +K
Sbjct: 184 LTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRT 243
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
L R TGGIV+ + II+YRG NY P
Sbjct: 244 HDLLERKTGGIVV-WRSGSKIILYRGPNYIYP 274
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 137 EKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
++I +KL A+ K+ R L KIE S +D E +T EE F ++G + K Y+P
Sbjct: 581 KRIEHKLAVAQAKKLRAERLLAKIEVSMLPSGPDYDQETITDEERAVFRRIGLRMKAYLP 640
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN-- 253
+G RG++ GVI NMHLHWK + +K+I K + ++ A L +GGI++ I
Sbjct: 641 LGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVAIERVPKG 700
Query: 254 -TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+I YRGKNY +P + PR L++ KAL +S
Sbjct: 701 FALIYYRGKNYRRPIN--LRPRNLLTKAKALKRS 732
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT E K+ +K + +GR +QG+ + W+K K+ VK K
Sbjct: 409 LTNAEMTNLRKLAKKLPCHFALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKL 468
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMS 272
+A EL LTGG++L + + I++YRGK++ PT + +
Sbjct: 469 MADELKMLTGGVLL-LRNKYYIVIYRGKDFL--PTSVAA 504
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 178 EEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAE 237
EE +MG + V V + G+ + V+ +H W+K++ +++ A ++K
Sbjct: 213 EELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEI 272
Query: 238 LARLTGGIVLEIHEENTIIMYRGKNYAQPPTE 269
R TGG+V+ + +++YRG +Y PP++
Sbjct: 273 TERRTGGLVI-WRAGSVMVVYRGSSYEGPPSK 303
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 320 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 379
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 380 GVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTSHAII 439
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P +P L++++AL +S
Sbjct: 440 LYRGKNYRRPTKS--APSNLLTKREALQRS 467
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 143 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQ 202
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 203 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 231
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 7/167 (4%)
Query: 148 KKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
KK ER + L K+ SE + D E+LT EE F K+G K +V +GRRG++ GVI
Sbjct: 552 KKIERSNQALAKLHSSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVI 611
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
+H HWK + +KVI K + ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 612 EEIHQHWKHKEIVKVITKQNQSYQITYTSMLLEVETGGVLIATQKLPHSHAIILYRGKNY 671
Query: 264 AQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
+P SP L++++AL +S ++K Y+ + ++ +E L+
Sbjct: 672 RRPEK---SPSNLLTKREALRRSVEVQRRGSMKYYVWERQKSIEELQ 715
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 367 LADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAKIAVKVGIENTNNEQ 426
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG ++ + ++ II+YRGK++
Sbjct: 427 MAWNLKHLTGGTII-LRNKDFIILYRGKDF 455
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 13/146 (8%)
Query: 146 ARKKEERIVEGLKKIE----PKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV-GRRG 200
A +K+E+ E L K+E P+E SE D E +T EE + ++G K K ++ + GRRG
Sbjct: 405 AVRKKEKAEEALSKVEKLMKPREPSE---DRETITEEERYTLQRVGLKMKAFLLLAGRRG 461
Query: 201 IYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIM 257
+Y G+I NMHLHWK + +KV+ K ++++ A + +GGI++ I+ + +
Sbjct: 462 VYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLY 521
Query: 258 YRGKNYAQPPTEIMSPRITLSRKKAL 283
YRGKNY +P E + P L+++KAL
Sbjct: 522 YRGKNYRRP--EELRPHNLLTKRKAL 545
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E++ P+ L+ M K + V + GI + V+ +H W+ + +K+ A +
Sbjct: 31 ELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNM 90
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKK 281
+++ EL + TGG+V+ +++YRGK+YA PP E P ++S+ K
Sbjct: 91 RKVHEELEKRTGGLVI-WRAGAALVIYRGKDYAGPPKERWIPTESVSKPK 139
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
L+ E +++ R+ + R QG+ M W+K + KV +K + + + +
Sbjct: 228 LSDREFTNLVRLARQMPPQFVISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAK 287
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPP 267
+A EL RLTG ++L E+ +I YRGK++ P
Sbjct: 288 MADELKRLTGCVLLG-REKTHMIFYRGKDFLPAP 320
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 19/188 (10%)
Query: 138 KIL-YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
KIL +K+ K+ K+ ++ +++EP D E++T EE F KMG K + + +
Sbjct: 581 KILNFKVEKSTKELTKLNASWRRVEPDA------DQELITNEERICFRKMGLKMDSCLTL 634
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EEN 253
GRRG++ GVI +H HWK + +KVI + +V A L +GGI++ + E
Sbjct: 635 GRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGY 694
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY-------IPKLEQEL 306
II++RGKNY +P + + L+++KAL +S + ++K + I +L+ EL
Sbjct: 695 AIIIFRGKNYKRPLHSV--SKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHEL 752
Query: 307 ELLRAQAE 314
E +R E
Sbjct: 753 EKVRDSEE 760
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 19/188 (10%)
Query: 138 KIL-YKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPV 196
KIL +K+ K+ K+ ++ +++EP D E++T EE F KMG K + + +
Sbjct: 581 KILNFKVEKSTKELTKLNASWRRVEPDA------DQELITNEERICFRKMGLKMDSCLTL 634
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EEN 253
GRRG++ GVI +H HWK + +KVI + +V A L +GGI++ + E
Sbjct: 635 GRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLKEGY 694
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKY-------IPKLEQEL 306
II++RGKNY +P + + L+++KAL +S + ++K + I +L+ EL
Sbjct: 695 AIIIFRGKNYKRPLHSV--SKNLLTKRKALSRSLEMQRIGSLKFFANQRQQKIYELQHEL 752
Query: 307 ELLRAQAE 314
E +R E
Sbjct: 753 ENVRDSEE 760
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE 233
++T EE F ++G + K Y+P+G RG++ GVI NMHLHWK + +K+I K + V+E
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 234 IAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
A LA +GGI++ I + +I YRGKNY +P + PR L++ KAL ++
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPIN--IRPRNLLTKAKALKRA 114
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 148 KKEERIVEGLKKIEPK-ESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVI 206
KK ER E L K+ SE + D E+LT EE F K+G K +V +GRRGI+ GVI
Sbjct: 551 KKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGIFDGVI 610
Query: 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVL---EIHEENTIIMYRGKNY 263
+H HWK + +KVI K A ++ + L TGG+++ ++ + II+YRGKNY
Sbjct: 611 EEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
Query: 264 AQPPTEIMSPRITLSRKKALDKS 286
+P SP ++++AL +S
Sbjct: 671 HRPTKS--SPSNLRTKREALRRS 691
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P +P L++++AL +S
Sbjct: 651 LYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Query: 141 YKLRKARKKEERIVEGLKKIEPKES-SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRR 199
++L KK ER + L K+ S S+ D E+LT EE F K+G K +V +GRR
Sbjct: 531 WRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRR 590
Query: 200 GIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENT---II 256
G+++GVI +H HWK + +KVI K A ++ + L TGG ++ I T II
Sbjct: 591 GVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAII 650
Query: 257 MYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+YRGKNY +P +P L++++AL +S
Sbjct: 651 LYRGKNYRRPTKS--APSNLLTKREALQRS 678
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K R + +GR QG+ + W+K KV VK ++
Sbjct: 354 LADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQ 413
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L RLTGG V+ + ++ II+YRGK++
Sbjct: 414 MARNLKRLTGGTVI-LRNKDYIIIYRGKDF 442
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 15/144 (10%)
Query: 173 EILTPEEHFYFLKMG-----RKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK--T 225
E ++ EE + F+K+G R + GRRG++ GV+ NMHLHWK + +KVI K
Sbjct: 145 EQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKGPI 204
Query: 226 FSAEEVKEIAAELARLTGGIVLEI---HEENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
F AE+ +I L +GG+++ I + II YRGKNY Q P+E + PR LS+++A
Sbjct: 205 FEAEQTAKI---LEMESGGVLVGIVTTTKGQAIIFYRGKNY-QRPSE-LRPRHLLSKRQA 259
Query: 283 LDKSKYRDGLRAVKKYIPKLEQEL 306
++S R++++++ KLE+E+
Sbjct: 260 YERSLEMQRKRSLEQHMLKLEKEI 283
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 82/148 (55%), Gaps = 22/148 (14%)
Query: 127 KKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKM 186
KK YER+ ++KIL + K HDPE L+PE +
Sbjct: 70 KKTYERIELKKKILQEYDFPEDKP------------------VHDPEYLSPEFMTALKER 111
Query: 187 GRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIV 246
R +++ +G+RG+++G I +++ HW H+TL++ + + +++ +A ++AR++G +V
Sbjct: 112 NRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVV 171
Query: 247 LEIHEEN-TIIMYRGKNYA---QPPTEI 270
+ + EE + I+YRG+N++ QPP+ I
Sbjct: 172 IAVTEETMSFILYRGRNFSHGYQPPSRI 199
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 95/171 (55%), Gaps = 7/171 (4%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
D E++T EE F K+G+K + + +GRRG++ GVI +H HWK + +KVI S +
Sbjct: 332 DKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQ 391
Query: 231 VKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSK 287
V A L +GG+++ I E + II+YRGKNY +P + P+ L++++AL++S
Sbjct: 392 VLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIK--LVPKNLLTKREALNRSL 449
Query: 288 YRDGLRAVKKYIPKLEQELELLRAQAE--TRSENRSDAAEDVQNTELDKPD 336
+ ++K + + +Q + L+ + + R D E + T+ + PD
Sbjct: 450 EMQRIGSLKFFAYQRQQAISDLKLKLADLQKGSRRIDQRESEKFTKHEPPD 500
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT +E Y K+ + +GR QG+ + W+K +K+ +K + ++
Sbjct: 123 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 182
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG++L + + II+YRGK++
Sbjct: 183 MANELKCLTGGVLL-LRNKFFIILYRGKDF 211
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 111/208 (53%), Gaps = 9/208 (4%)
Query: 136 EEKILYKLRKARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVP 195
+E+ L+ L++ ++ +++ L ++ D E++T EE F K+G+K + +
Sbjct: 598 QERNLFILKRKIERSAKVLAKLNSAW--RPADHDADKEMITEEERECFRKIGQKMDSSLL 655
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EE 252
+GRRG++ GVI +H HWK + +KVI S +V A L +GG+++ I E
Sbjct: 656 LGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 715
Query: 253 NTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQ 312
+ II+YRGKNY +P + P+ L++++AL++S + ++K + + +Q + L+ +
Sbjct: 716 HAIIIYRGKNYRRPIK--LVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLK 773
Query: 313 AE--TRSENRSDAAEDVQNTELDKPDFG 338
+ R D E + T+ + PD
Sbjct: 774 LADLQKGSRRIDQRESEKFTKHEPPDVA 801
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSAEEVKE 233
LT +E Y K+ + +GR QG+ + W+K +K+ +K + ++
Sbjct: 422 LTDDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQ 481
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG++L + + II+YRGK++
Sbjct: 482 MANELKCLTGGVLL-LRNKFFIILYRGKDF 510
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 194 VPV-GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEE 252
VP+ GRRG++ G I NMHLHWK + +K++VK S +VK+IA L +GGI++ + +
Sbjct: 4 VPLSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKV 63
Query: 253 N---TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
+ I+++RGK+YA+P + PR LS++KAL +S
Sbjct: 64 SKGYAIVVFRGKDYARPSK--LRPRNLLSKRKALARS 98
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 8/159 (5%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D EI+T EE F K+G K ++ + +GRRGI+ GV+ +H HWK + +KVI
Sbjct: 548 SEQDTDLEIMTDEERECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQ 607
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
+V A L +GGI++ + E + II+YRGKNY +P ++ + L++++A
Sbjct: 608 KLFSQVINTAKVLETESGGILVSVDKLKEGHAIIIYRGKNYKRPSIKL--AKNLLTKREA 665
Query: 283 LDKSKYRDGLRAVKKYIPKLEQ---ELELLRAQAETRSE 318
L +S + ++K + + EQ ELE+ A + + E
Sbjct: 666 LRRSLEMQRIGSMKFFAHQREQAISELEVKLADLQQKKE 704
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 170 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 229
H LT E YF K+ + + +GR +G+ + W+K K+ +K
Sbjct: 339 HSSAKLTDYELTYFRKLAQSLPTHFVLGRNKGLKGLASAILKLWEKSLIAKIAIKYGIPN 398
Query: 230 EVKEIAA-ELARLTGGIVLEIHEENTIIMYRGKNY 263
E+ A EL LTGG++L + + I++YRG ++
Sbjct: 399 TDNEMMANELKCLTGGVLL-LRNKFYILLYRGNDF 432
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 563 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 622
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KA
Sbjct: 623 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKA 681
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRA 311
L +S L ++K + + E+ +E L+
Sbjct: 682 LQRSVVMQRLGSLKFFAYQRERAIEDLKV 710
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 233
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG+++ + + I++YRGK++
Sbjct: 421 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 449
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D EILT EE ++G K + + +GRRG++ GV+ +H HWK + KVI
Sbjct: 561 SEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQ 620
Query: 226 FSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKA 282
V A L + G+++ I E + I++YRGKNY +P +++M+ + L+++KA
Sbjct: 621 KLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL-LTKRKA 679
Query: 283 LDKSKYRDGLRAVKKYIPKLEQELELLRA 311
L +S L ++K + + E+ +E L+
Sbjct: 680 LQRSVVMQRLGSLKFFAYQRERAIEDLKV 708
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 233
LT EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 359 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 418
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG+++ + + I++YRGK++
Sbjct: 419 MADELRYLTGGVLI-LRNKYLIVLYRGKDF 447
>gi|224065312|ref|XP_002301769.1| predicted protein [Populus trichocarpa]
gi|222843495|gb|EEE81042.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 286 SKYRDGLRAVKKYIPKLEQELELLRAQAETRSENRS-DAAEDVQNTELDKPDFGSIPSMM 344
SK RDGLRAVK+YIP L+Q+LELL+A+AE + NRS AA++ +D+ + ++
Sbjct: 2 SKCRDGLRAVKRYIPALQQDLELLQARAEGKVGNRSTGAAKETPEAGIDE----KLKEII 57
Query: 345 ECSENDP--TTESLMASDSEDLSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHE 402
+ E M EDLSDIF T +TET+E E RP YL++FDKF V+ + E E
Sbjct: 58 DRKERKALKIVVVWMTIRFEDLSDIFMTVPDTETDE-IEKRPPYLEEFDKFSVEANGEPE 116
Query: 403 D 403
+
Sbjct: 117 E 117
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 12/124 (9%)
Query: 159 KIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQT 218
K++PK+ M E +T EE + K+G + K Y+ +GRR ++ GVI NMHLHWK Q
Sbjct: 332 KMKPKD---MHASKEDVTEEEMYTLRKIGLRMKPYLLLGRREVFSGVIENMHLHWKWRQL 388
Query: 219 LKVIVKT--FSAEE---VKEIAAELARLTGGIVLEIHE---ENTIIMYRGKNYAQPPTEI 270
+K+IVK F E ++ IA L +GG+++ I II+YRGKNY Q P +
Sbjct: 389 VKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVGEAIIVYRGKNY-QRPNDG 447
Query: 271 MSPR 274
+SP+
Sbjct: 448 ISPQ 451
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 171 DPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
D E++T EE K+G K ++ + +GRRG++ GVI +H HWK + +KVI +
Sbjct: 590 DLEMMTEEERECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQ 649
Query: 231 VKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
V A L TGGI++ I E + II+YRGKNY +P + + L+++KAL +S
Sbjct: 650 VIRTAKFLEAETGGILVSIDKLKEGHAIIIYRGKNYRRPQRLLNN---LLTKRKALCRS 705
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 124 YKKKKEYERMTAEEKILYKLRKARKKEERIVEGLKKIEPKE-SSEMTHDPEILTPEEHFY 182
YK+K E E E Y+LR + K E+ + L K+ S D I+T EE
Sbjct: 480 YKEKLERELRNQE----YRLRILKSKIEKPAKDLSKLNSAWVPSPRDADQGIMTEEEREC 535
Query: 183 FLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLT 242
F K+G K + + +GRRG+++GV+ +H HWK + +KVI +V A L +
Sbjct: 536 FRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAES 595
Query: 243 GGIVLEI---HEENTIIMYRGKNYAQP 266
GI++ + E + II+YRGKNY +P
Sbjct: 596 DGILVSVDKLKEGHAIIIYRGKNYKRP 622
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 14/108 (12%)
Query: 166 SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT 225
SE D E +T EE + F K+G + ++ +GRRG++ GVI NMHLHWK + +K+I+K
Sbjct: 593 SEHPRDRETITEEERYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILK- 651
Query: 226 FSAEEVKEIAAELARL----TGGIV----LEIHEENT--IIMYRGKNY 263
E+ K IA E+A++ +GGI+ L++H E +IM K+Y
Sbjct: 652 ---EKDKAIALEVAKMLEIESGGILVGVALQLHIEKLEELIMKLRKDY 696
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 29/174 (16%)
Query: 140 LYKLRKARKKEERIVEGLKKIEPKESSEMTH------------DPEILTPEEHFYFLKMG 187
+Y+L K K+++R L K + + E++ D EI+T EE F KMG
Sbjct: 617 IYRLEKELKEQQRKAFILNKKIERSTMELSKLNAAWKPSGEDIDLEIMTDEERECFRKMG 676
Query: 188 RKCKNYVPVG------------RRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIA 235
K ++ + +G RRG++ GV+ +H HWK + KVI V +
Sbjct: 677 LKMRSCLVLGKAISLHSTTSAGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYTS 736
Query: 236 AELARLTGGIVL---EIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
L R +GGI++ ++ E II+YRGKNY++P +I + L+++KAL +S
Sbjct: 737 QFLERESGGILVSVDQLKEGYAIIIYRGKNYSRPSEKI--AKNLLTKRKALRRS 788
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 170 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVK-TFSA 228
H LT E YF ++ + +GR QG+ + W K K+ +K
Sbjct: 444 HASAKLTDGELTYFRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQN 503
Query: 229 EEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ + +A EL RLTGG++L + + I++YRGK++
Sbjct: 504 TDNETMANELKRLTGGVLL-LRNKFYILLYRGKDF 537
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E +T EE F +G + K Y+ + G++ VI NMHLHW++ + +K+I K S V+
Sbjct: 523 ETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVKLITKQKSLAFVE 582
Query: 233 EIAAELARLTGGIVLEIH---EENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKS 286
E A+ L +GGI++ I + ++I YRGK+Y +P T + R L++ KAL S
Sbjct: 583 ETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPIT--LRHRNLLTKTKALQHS 637
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT +EH LK+ + + +GR QG+ + W+K K+ VK E+
Sbjct: 322 LTNDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNEL 381
Query: 235 AA-ELARLTGGIVLEIHEENTIIMYRGKNYAQPPTE---IMSPRITLSRKKALDKS 286
A EL +LTGG +L + + I++YRGK++ PT I+S R + +A+D S
Sbjct: 382 MALELKKLTGGTLL-LRNKYYILIYRGKDFI--PTSVAAILSERQENVQCRAVDVS 434
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI---HEEN 253
GRRG++ GVI +H HWK + +KVI S +V A L +GG+++ I E +
Sbjct: 119 GRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEGH 178
Query: 254 TIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRAQA 313
II+YRGKNY +P + P+ L++++AL++S + ++K + + +Q + L+ +
Sbjct: 179 AIIIYRGKNYRRPIK--LVPKNLLTKREALNRSLEMQRIGSLKFFAYQRQQAISDLKLKL 236
Query: 314 E--TRSENRSDAAEDVQNTELDKPD 336
+ R D E + T + PD
Sbjct: 237 ADLQKGSRRIDQRESEKFTXHEPPD 261
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 22/176 (12%)
Query: 150 EERIVEGLKKIEPKESSEMT-------HDPEILTPEEHFYFLKMGRKCKNYVPV-----G 197
EER E L++I K SS + H +L P Y L M N++ V G
Sbjct: 548 EER--ECLRRIGLKMSSSLVLGRSNRIHSCLLLIP----YPLAMRLIYINFIFVFVSFLG 601
Query: 198 RRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENT 254
RRG++ G++ +H HWK + KVI V A L + G+++ I E +
Sbjct: 602 RRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAKSLEAESNGVLISIEKLKEGHA 661
Query: 255 IIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLR 310
I++YRGKNY +P +++M+ + L+++KAL +S L ++K + + E+ +E L+
Sbjct: 662 ILIYRGKNYKRPSSKLMAQNL-LTKRKALQRSVAMQRLGSLKFFAYQRERVIEDLK 716
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE-EVKE 233
L+ EE Y + + + +GR QG+ + W+K K+ +K + +E
Sbjct: 334 LSDEELTYLRNIAQALPFHFVLGRNHGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 393
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A EL LTGG+++ + + II+YRGK++
Sbjct: 394 MADELKHLTGGVLI-LRNKYLIILYRGKDF 422
>gi|302754228|ref|XP_002960538.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
gi|300171477|gb|EFJ38077.1| hypothetical protein SELMODRAFT_402884 [Selaginella moellendorffii]
Length = 961
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 48/170 (28%)
Query: 145 KARKKEERIVEGLKKIE-------PKESSEMT------HDPEILTPEEHFYFLKMGRKCK 191
+A K E+ +E L I+ K SS +T + E L+ E ++ ++G K +
Sbjct: 90 RAPKTEKEFLEALYTIDLNRTEIRRKHSSHLTEGNHCLRETEPLSEREAAHYARIGNKNQ 149
Query: 192 NYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHE 251
+ VG +H ++ EE + I AELARL+GGIVL++ E
Sbjct: 150 KFASVGS---------------PRHNSM---------EETRRIGAELARLSGGIVLDVLE 185
Query: 252 ENTIIMYRGKNYAQPPTEIMSPRI-TLSRK---------KALDKSKYRDG 291
+ T+IM+RGKNY Q P E+ P + + R+ +ALD YR G
Sbjct: 186 DRTVIMFRGKNY-QTPEELYPPTLEAVDRRNADSRHHIQRALDSQVYRLG 234
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 157 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 214
L +EP+ S D E LT EE F +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 215 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTVDMDNICQQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P +T P LTP+E GR+ +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRARGRQLPPICKLGKNGVYANLVKQVREAFEACD 345
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L GG V+ H+ I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH-HQGGVIFLFRGRNY 272
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P+ LTP+E K GR+ +G+ G+Y ++ + ++ ++V + +
Sbjct: 300 PDGLTPDEAEDMRKRGRQLPPICKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDC 359
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++I A+L L +L E+ I+M+RG ++ + PP E
Sbjct: 360 RKIGAKLKDLVPCTLLSFEFEH-ILMWRGNDWKSSLPPLE 398
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E L+ EE +K K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 181 EPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMD 240
Query: 233 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ +L GG V IH + ++ ++RG+NY
Sbjct: 241 NVCQQLEERVGGKV--IHRQGGVVFLFRGRNY 270
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 157 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 214
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 165 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 224
Query: 215 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 225 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 272
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 286 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 345
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 346 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 398
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 157 LKKIEPKESSEMTHD--PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWK 214
L +EP+ S D E LT EE +K K K + +GR G+ ++ N+H HWK
Sbjct: 51 LAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWK 110
Query: 215 KHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ + K+ K ++ I +L GG V IH + +I ++RG+NY
Sbjct: 111 RKRVCKIKCKGVCTIDMDNICHQLEEKVGGKV--IHRQGGVIFLFRGRNY 158
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 172 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 231
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 232 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 284
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 127 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 186
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 187 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 220
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 417 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 476
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 477 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 530
Query: 291 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 327
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 531 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 575
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 173 EILTPEEHFYFLK-MGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
E+ P + L+ +G + + + VG+ GI +G++ +H W+ + +K+ + A +
Sbjct: 140 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 199
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQP 266
+ L R TGG+V+ +TII+YRG NY P
Sbjct: 200 RRTHEILERKTGGLVI-WRSGSTIILYRGTNYTYP 233
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT E ++ + +GR QG+ +M W++ + K+ +K +
Sbjct: 430 PPKLTDREMTILRRLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTD 489
Query: 232 KE-IAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITLSRKKALDKSKYRD 290
E I E+ LTGG +L +E +I+ YRGK++ P + + +++ L S
Sbjct: 490 SELITEEVKELTGGTLLSRDKE-SIVFYRGKDFLPPAVS-----LAIEKRRKLGSSTIYK 543
Query: 291 GLRAVKKYIP-------KLEQELEL-LRAQAETRSENRSDAAEDV 327
+++ +P K+ ++ + +R + + +ENR+++ V
Sbjct: 544 AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTV 588
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE +K K + + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 199 EPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMD 258
Query: 233 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ +L TGG + IH + ++ ++RG+NY
Sbjct: 259 NVCHQLEERTGGKI--IHRKGGVLYLFRGRNY 288
>gi|297603821|ref|NP_001054631.2| Os05g0145300 [Oryza sativa Japonica Group]
gi|255676015|dbj|BAF16545.2| Os05g0145300, partial [Oryza sativa Japonica Group]
Length = 92
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 146 ARKKEERIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGV 205
A+KK +++ LKK E + HDPE+LT E+ + K+G + +NYVPVG RG++ GV
Sbjct: 11 AKKKVALLLQKLKKYELPDLPAPRHDPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGV 70
Query: 206 ILNMHLHWKKHQTLKVIVKTF 226
+ NMH+HWK H+T++V F
Sbjct: 71 VQNMHMHWKFHETVQVCCDNF 91
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + + ++ K V +GR G+ ++ ++H HWK + ++V +
Sbjct: 156 EPLTPAERTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVD 215
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + EL TGG+++ H +I+YRG++Y
Sbjct: 216 MQNVCHELEDKTGGLIIHRH-GGQLILYRGRHY 247
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + ++ +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 161 EPLTPAERSFLVEKCQKNRTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVD 220
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + EL TGG+++ H +I+YRG++Y
Sbjct: 221 MQNVCHELEDKTGGLIIHRH-GGQLILYRGRHY 252
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 215 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 246
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 163 KESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVI 222
K E+ DP LT EE + K K + +GR G+ ++ N+H HWK+ + K+
Sbjct: 238 KTREEILGDP--LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIK 295
Query: 223 VKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
K ++ + +L TGG ++ + + ++RG+NY
Sbjct: 296 CKGVCTVDMDNVCQQLEERTGGKII-YRKGGVLYLFRGRNY 335
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P + PE LT +E GRK +G+ G+Y+ ++ N+ +++ +
Sbjct: 349 KPVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECE 408
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+++ + + + ++I A+L L +++ E+ I+M+RG+++
Sbjct: 409 LVRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEH-ILMWRGRDW 453
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + + +K K + +GR G+ ++ ++H HWK + ++V +
Sbjct: 131 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 190
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + +L TGG+++ H +I+YRG++Y
Sbjct: 191 MQNVCHQLEDKTGGLIIHRH-GGQLILYRGRHY 222
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 197 GRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII 256
GR G+ ++ ++H HWK + ++V +++ + +L TGG+++ H +I
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRH-GGQLI 426
Query: 257 MYRGKNY 263
+YRG++Y
Sbjct: 427 LYRGRHY 433
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P + PE LT EE K GRK + + G+Y ++ N+ +++ +
Sbjct: 345 KPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECE 404
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+++ + +A + ++I A+L L +++ E+ I+M+RG ++
Sbjct: 405 LVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEH-ILMWRGSDW 449
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT +E +K K + +GR G+ ++ N+H +W + K+ + ++
Sbjct: 237 EPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMD 296
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG ++ + T+ ++RGKNY
Sbjct: 297 NVCQQLEERTGGKII-YRQAGTVYLFRGKNY 326
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P + PE LT EE K GRK + + G+Y ++ N+ +++ +
Sbjct: 345 KPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECE 404
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+++ + +A + ++I A+L L +++ E+ I+M+RG ++
Sbjct: 405 LVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEH-ILMWRGSDW 449
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 173 EILTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEE 230
E LTP E + + +K K + +GR G+ ++ ++H +WK + +++ +
Sbjct: 162 EPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLNDIHNNWKTCEAVRIKCLGVPTVD 221
Query: 231 VKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ + +L TGG+++ H + +I+YRG++Y
Sbjct: 222 MQNVCHQLEDKTGGVIIHRH-GSLLILYRGRHY 253
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ K + + +GR G+ ++ N+H HWK+ + K+ ++
Sbjct: 250 EPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMD 309
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG V+ + + ++RG+NY
Sbjct: 310 NVCQQLEERTGGKVI-YRKGGVVYLFRGRNY 339
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ K K + +GR G+ ++ N+H HWK+ + K+ K ++
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG V+ + + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI-YGKGGVLFLFRGRNY 331
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LTP E +K + +GR G+ ++ +H HW++ + KV + ++K
Sbjct: 231 EPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 290
Query: 233 EIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ L +GG V IH ++ +YRG+NY
Sbjct: 291 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRNY 320
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 153 IVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLH 212
+EG + I E+ +P LTP+E + K V +G+ G+ ++ +H H
Sbjct: 74 FLEGQRPILATTREEVMGEP--LTPDEIGDLVLACNKEHRQVNIGKDGLTHNMLDLIHCH 131
Query: 213 WKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
WK+ + +K+ K ++ + + TGG +++ H +I ++RG+NY
Sbjct: 132 WKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRH-GGSIYLFRGRNY 181
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P L+ E Y + GR+ K + R G+Y ++ + ++ + +K+ + + +V
Sbjct: 209 PAGLSVEHADYLRRRGRRVKPLTKLSRNGVYLHLVNEVKSAFEVDELVKLDCRGMNIADV 268
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRG 260
++I A+L L GIVL E+N ++M+RG
Sbjct: 269 RKIGAKLKELL-GIVLLSFEDNCVLMWRG 296
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 99 AGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLK 158
G A + K+ K +R VR +E + + I+ ++R+ RK + L
Sbjct: 167 TGKAPLLTKEEKARRRGVR----LHTPLGQETPQTVSAHGIMMEVRERRKMD------LA 216
Query: 159 KIEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 215
++ P + E+ +P LTP E +K + +GR G+ ++ +H HW++
Sbjct: 217 RVSPGDGRSREEVLGEP--LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 274
Query: 216 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ KV + ++K + L +GG V IH ++ +YRG++Y
Sbjct: 275 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 99 AGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLK 158
G A + K+ K +R VR +E + + I+ ++R+ RK + L
Sbjct: 167 TGKAPLLTKEEKARRRGVR----LHTPLGQETPQTVSAHGIMMEVRERRKMD------LA 216
Query: 159 KIEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 215
++ P + E+ +P LTP E +K + +GR G+ ++ +H HW++
Sbjct: 217 RVSPGDGRSREEVLGEP--LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 274
Query: 216 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ KV + ++K + L +GG V IH ++ +YRG++Y
Sbjct: 275 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 250 HEENTIIMYRGKNY 263
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 250 HEENTIIMYRGKNY 263
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 161 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 219
Query: 250 HEENTIIMYRGKNY 263
N +I+YRG+NY
Sbjct: 220 RNINILILYRGRNY 233
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 157 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 215
Query: 250 HEENTIIMYRGKNY 263
N +I+YRG+NY
Sbjct: 216 RNINILILYRGRNY 229
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 250 HEENTIIMYRGKNY 263
N +I+YRG+NY
Sbjct: 221 RNINILILYRGRNY 234
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 158 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVVS- 216
Query: 250 HEENTIIMYRGKNY 263
N II+YRG+NY
Sbjct: 217 RSINIIILYRGRNY 230
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 156 CSRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYR 215
Query: 250 HEENTIIMYRGKNY 263
H N +++YRG+NY
Sbjct: 216 H-INILVLYRGRNY 228
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ K + +GR G ++ N+H HWK+ + K+ ++
Sbjct: 170 EPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMD 229
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG V+ I ++RG+NY
Sbjct: 230 NVCQQLEEKTGGKVI-YRRGGVIYLFRGRNY 259
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ + ++ I L TGG + I
Sbjct: 161 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVATLDMDNICFHLEDKTGGKI--I 218
Query: 250 HEE-NTIIMYRGKNY 263
H N +I+YRG+NY
Sbjct: 219 HRSINILILYRGRNY 233
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L TGG V+
Sbjct: 162 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-Y 220
Query: 250 HEENTIIMYRGKNY 263
N II+YRG+NY
Sbjct: 221 RSINIIILYRGRNY 234
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K + +GR G+ ++ ++H HWK + +++ ++K + ++L T G ++
Sbjct: 178 KTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCSQLEDKTFGKIIH 237
Query: 249 IHEENTIIMYRGKNY 263
H ++++YRG+NY
Sbjct: 238 RH-CGSLVLYRGRNY 251
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 175 LTPEEHFYFLKMGRK--CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
LTP E + + +K K + +GR G ++ ++H +WK + +++ +++
Sbjct: 165 LTPAERAFLVDRCQKNRTKRQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQ 224
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG+++ H + +I+YRG++Y
Sbjct: 225 NVCHQLEDKTGGLIIHRH-GSLLILYRGRHY 254
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKE- 233
L P+E ++ R + +GR QG+ M W+K K+ +K E
Sbjct: 423 LGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSER 482
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A +L +LTGGI+L ++ ++ YRGKN+
Sbjct: 483 MAEDLKKLTGGIMLS-RNKDFLVFYRGKNF 511
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 231 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 288
Query: 256 I-MYRGKNY 263
+ +YRG+NY
Sbjct: 289 VFLYRGRNY 297
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 251 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 308
Query: 256 I-MYRGKNY 263
+ +YRG+NY
Sbjct: 309 VFLYRGRNY 317
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
+GR G+ ++ +H HW++ + KV + ++K + L +GG V IH +
Sbjct: 253 IGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGV 310
Query: 256 I-MYRGKNY 263
+ +YRG+NY
Sbjct: 311 VFLYRGRNY 319
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG ++
Sbjct: 202 CSRQINLGKGGVTHNMLDDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYR 261
Query: 250 HEENTIIMYRGKNY 263
H N +++YRG+NY
Sbjct: 262 H-INILLLYRGRNY 274
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 99 AGVAKVKRKKLKGKRAVVRWLKHFRYKKKKEYERMTAEEKILYKLRKARKKEERIVEGLK 158
G A + K+ K +R VR +E + + I+ ++R R+ + L
Sbjct: 169 TGKAPLLTKEEKARRRGVR----LHTPLGQEPPQTVSAHGIMMEVRDRRQMD------LA 218
Query: 159 KIEPKES---SEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKK 215
++ P + E+ +P LTP E +K + +GR G+ ++ +H HW++
Sbjct: 219 RVSPGDGRSREEVLGEP--LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRR 276
Query: 216 HQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTII-MYRGKNY 263
+ KV + ++K + L +GG V IH ++ +YRG++Y
Sbjct: 277 QEICKVRCRGVPTVDMKNLCYHLEEKSGGKV--IHRVGGVVFVYRGRHY 323
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PE LT EE + GR + + GIY ++ ++ ++ + +K+ + + +
Sbjct: 351 PEGLTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNPSDY 410
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
K+I A+L L ++L +E I+MYRGK +
Sbjct: 411 KKIGAKLRDLVPCVLLSFDDEQ-ILMYRGKEW 441
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ +I ++H HWKK + +++ ++ I L +GG ++
Sbjct: 160 CTRQINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV-Y 218
Query: 250 HEENTIIMYRGKNY 263
N +++YRG+NY
Sbjct: 219 RNINILVLYRGRNY 232
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE ++ + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 250 EPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMD 309
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L TGG ++ + +YRG+NY
Sbjct: 310 NVKQQLEERTGGKII-YSRGGALYLYRGRNY 339
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 170 HDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAE 229
H P+ LT EE K GRK +G+ G+Y ++ ++ +++ + +++ + +
Sbjct: 365 HIPDGLTLEEVTEMRKKGRKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQGLNGS 424
Query: 230 EVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ ++I A+L L +++ E+ I+++RG+++
Sbjct: 425 DFRKIGAKLKDLVPCVLISFESEH-ILLWRGRDW 457
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ I L +GG ++
Sbjct: 161 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYR 220
Query: 250 HEENTIIMYRGKNY 263
H N +++YRG+NY
Sbjct: 221 H-INILLLYRGRNY 233
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
+ K + +GR G+ ++ ++H HWK + +++ ++K + +L T G V+
Sbjct: 180 RTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKTSGKVIH 239
Query: 249 IHEENTIIMYRGKNY 263
+ +++YRG+NY
Sbjct: 240 -RQGGLLVLYRGRNY 253
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K + +GR G+ ++ ++H HWK + +++ ++K + +L T G ++
Sbjct: 173 KTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 249 IHEENTIIMYRGKNY 263
H +++YRG+NY
Sbjct: 233 RH-CGLLVLYRGRNY 246
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K +V +GR G+ ++ +H HWK + +++ ++ I +L T G V+
Sbjct: 175 KTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVIF 234
Query: 249 IHEENTIIMYRGKNY 263
H T+I+YRG+NY
Sbjct: 235 RH-GGTLILYRGRNY 248
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
P LT EE K+GR+ +G+ G+Y ++ ++ +K +KV K + +
Sbjct: 206 PAGLTIEEANNLRKLGRELPPVCHLGKNGVYVNLVRDVRNAFKVDDLVKVDCKNMNPSDY 265
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRG 260
K+I A+L L ++L E +I+M+RG
Sbjct: 266 KKIGAKLKDLVPCVLLSFERE-SILMWRG 293
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEI 234
LT E + RK + +GR G+ ++ +H HWK+ + KV K ++ +
Sbjct: 91 LTSAEVRELVTKARKEPRQINLGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNV 150
Query: 235 AAELARLTGGIVLEIHEENTIIMYRGKNY 263
L TGG ++ + + + ++RG+NY
Sbjct: 151 CRVLEEKTGGKII-LRQGGAVYLFRGRNY 178
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG V+
Sbjct: 159 CARQINLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMDNVCFHLEDKSGGKVI-Y 217
Query: 250 HEENTIIMYRGKNY 263
N +++YRG+NY
Sbjct: 218 RNINILLLYRGRNY 231
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWKK + +++ ++ + L +GG V+
Sbjct: 159 CARQINLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVI-Y 217
Query: 250 HEENTIIMYRGKNY 263
N +++YRG+NY
Sbjct: 218 RNINILLLYRGRNY 231
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 175 LTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKT-FSAEEVKE 233
L EE Y K+ R + +GR QG+ + W+K K+ VK ++
Sbjct: 366 LADEELTYLRKLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQ 425
Query: 234 IAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+A L LTGG ++ + ++ +I+YRGK++
Sbjct: 426 MAWNLKHLTGGTII-LRNKDFVILYRGKDF 454
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 176 KTKRQVNLGRDGLTHNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 235
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 236 KH-CGTLVLYRGRNY 249
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ +++ + L GG ++
Sbjct: 146 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKII-Y 204
Query: 250 HEENTIIMYRGKNY 263
N I++YRG+NY
Sbjct: 205 RNINIILLYRGRNY 218
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ +++ + L GG ++
Sbjct: 165 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKII-Y 223
Query: 250 HEENTIIMYRGKNY 263
N I++YRG+NY
Sbjct: 224 RNINIILLYRGRNY 237
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG V+
Sbjct: 156 CSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVV-Y 214
Query: 250 HEENTIIMYRGKNY 263
N +++YRG+NY
Sbjct: 215 RNINILLLYRGRNY 228
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
+GR G+ ++ +H HW++ + KV + ++ + L +GG V++ +
Sbjct: 253 IGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNNLCYHLEEKSGGKVIK-RVGGVV 311
Query: 256 IMYRGKNY 263
+YRG+NY
Sbjct: 312 FLYRGRNY 319
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K + +G G+ ++ ++H HWK + ++V ++K + +L T G ++
Sbjct: 173 KTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVDMKNVCTQLEDKTFGKIIH 232
Query: 249 IHEENTIIMYRGKNY 263
H +++YRG+NY
Sbjct: 233 RH-CGLLVLYRGRNY 246
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K V +GR G+ ++ +++ HWK + ++V ++K + L T G V+
Sbjct: 175 KTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVS 234
Query: 249 IHEENTIIMYRGKNY 263
H T+++YRG+NY
Sbjct: 235 KH-SGTLVLYRGRNY 248
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 272
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 273 GVVYLFRGRNY 283
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 189 KCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLE 248
K K + +GR G+ ++ ++H HW+ + +++ ++K + +L T G ++
Sbjct: 169 KTKRQINLGRDGLTHNMLNDIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIH 228
Query: 249 IHEENTIIMYRGKNY 263
H +++YRG+NY
Sbjct: 229 RH-GGFLVLYRGRNY 242
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
++ +L GG V+ + ++RG+NY
Sbjct: 301 KVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 173 EILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVK 232
E LT EE + K + +GR G+ ++ N+H WK+ + K+ K ++
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 233 EIAAELARLTGGIVLEIHEENTIIMYRGKNY 263
+ +L GG V+ + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI-YRRGGVLFLFRGRNY 330
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P + PE LT +E + GR+ +G+ G+Y ++ N+ ++ +
Sbjct: 344 KPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCE 403
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNYAQPPTEIMSPRITL 277
+++ + + ++I A+L L +++ E I+++RG+ + +T
Sbjct: 404 LVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQ-ILIWRGREWKS--------SLTT 454
Query: 278 SRKKALDKSKYRDGLR--AVKKYIPKLEQELELLRAQAETRSENRSDAAEDVQNTELDKP 335
KK D L V +P+ + E + Q++T ++N + ++QN P
Sbjct: 455 PDKKG-------DILEDIEVDTALPE-DDEPSVSPNQSQTMTQNPPLDSMELQN----DP 502
Query: 336 DFGSI-PSMMECSENDPTTESLMASDSEDLSD 366
D + PS ++ SE + T SL + ++D+++
Sbjct: 503 DGHDLSPSTVDSSEMEGTINSLQSWSTKDVTE 534
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 82 VNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 139
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 140 GVVYLFRGRNY 150
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 318
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 319 GVLYLFRGRNY 329
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 261 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 318
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 319 GVLYLFRGRNY 329
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ I + TGG + IH
Sbjct: 260 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKI--IHRVG 317
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 318 GVLYLFRGRNY 328
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 215 VNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKI--IHRVG 272
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 273 GVVYLFRGRNY 283
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 222 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEI--IHRVG 279
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 280 GVVYLFRGRNY 290
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +GR G ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 224 VNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEI--IHRVG 281
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 282 GVVYLFRGRNY 292
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 196 VGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTI 255
+GR G ++ ++H +WK+ Q +++ K ++ + L TGG ++ +
Sbjct: 112 LGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIIS-RAGGVV 170
Query: 256 IMYRGKNY 263
++RG+NY
Sbjct: 171 YLFRGRNY 178
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 172 PEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEV 231
PE LT EE + GRK +G+ G+Y ++ ++ ++ +KV + + ++
Sbjct: 206 PEGLTVEEADSLRRRGRKIPAICHLGKNGVYLNLVRDVRNAFQADNLVKVDCEKMNTHDL 265
Query: 232 KEIAAELARLTGGIVLEIHEENTIIMYRG 260
++I A+L L ++L E I+M++G
Sbjct: 266 RKIGAKLKDLVPCVLLSFDHE-CILMWKG 293
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 158 KKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217
K + P +T P LTP+E G + +G+ G+Y ++ + ++
Sbjct: 4 KPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACD 63
Query: 218 TLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEENTIIMYRGKNY--AQPPTE 269
++V + + ++I A+L L I+L E+ I+M+RG ++ + PP E
Sbjct: 64 LVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEH-ILMWRGSDWKSSLPPLE 116
>gi|118497151|ref|YP_898201.1| RNA-binding protein [Francisella novicida U112]
gi|194323449|ref|ZP_03057226.1| conserved hypothetical protein [Francisella novicida FTE]
gi|208778944|ref|ZP_03246290.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372518|ref|ZP_04988007.1| hypothetical protein FTCG_00080 [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423057|gb|ABK89447.1| RNA-binding protein [Francisella novicida U112]
gi|151570245|gb|EDN35899.1| hypothetical protein FTCG_00080 [Francisella novicida GA99-3549]
gi|194322304|gb|EDX19785.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|208744744|gb|EDZ91042.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 92
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 16 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATSSELVQI 75
Query: 250 HEENTIIMYR 259
N +++YR
Sbjct: 76 I-GNILVLYR 84
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 194 VPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253
V +G G+ ++ +H HWK+ + KV K ++ + L TGG + IH
Sbjct: 161 VNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKI--IHRVG 218
Query: 254 TII-MYRGKNY 263
++ ++RG+NY
Sbjct: 219 GVVYLFRGRNY 229
>gi|57339888|gb|AAW49931.1| hypothetical protein FTT0461 [synthetic construct]
Length = 127
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 42 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATRSELVQI 101
Query: 250 HEENTIIMYR 259
N +++YR
Sbjct: 102 I-GNILVLYR 110
>gi|326432055|gb|EGD77625.1| ubiquitin-activating enzyme E1 [Salpingoeca sp. ATCC 50818]
Length = 1209
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 223 VKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA---------QPPTEI 270
K + + IA A +TG ++LE++ + + YR NY +PP
Sbjct: 919 CKMIAGRIIPAIATSTASVTGLVMLELYKLVQHKPLEAYRNANYNLGANTYFFFEPPA-- 976
Query: 271 MSPRITLSRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 311
+ ++T S KK LD + ++ KY+ + E++L+ LRA
Sbjct: 977 -AKQLTSSTKKKLDSGSFEAAVQQFNKYLSQSEEKLQTLRA 1016
>gi|361127358|gb|EHK99329.1| putative Transcription factor IIIB 60 kDa subunit [Glarea
lozoyensis 74030]
Length = 775
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 99 AGVAKVKRKKLKGKRAVVR---WLKH----FRYKKKKEYERMTAEEKILYKLRKARKKEE 151
AG +V+ L + A+++ W+ + R K+KKE+ER AE+ K R+ARKK+
Sbjct: 535 AGDPEVENMILSPEEALIKEKIWINNNKDWLRLKQKKEFERKLAEDG-PPKARRARKKKP 593
Query: 152 RIVEGLKKIEPKESSEMTHDPEILTPEEHFYFLKMGRKCKNYVPVGRRGIYQG 204
+I EG + ++P E++ T + +T + + K+ RG++ G
Sbjct: 594 KIGEGHEPMDPAEAAVQTMEKVKMTKSKKIDYQKL------------RGLFDG 634
>gi|194865359|ref|XP_001971390.1| GG14458 [Drosophila erecta]
gi|190653173|gb|EDV50416.1| GG14458 [Drosophila erecta]
Length = 325
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 364 LSDIFETDSETETEEKAELRPLYLDQFDKFPVQNDEEHEDFEEHLRQISIDSRNAKSL 421
LSDI ++D T +EKA+ RP +FD FP ++D+ E + R++S++ N L
Sbjct: 24 LSDISDSDESTSVDEKAQKRPDDYSEFDGFPFRDDD--ESLLDSSREMSVEDHNWDVL 79
>gi|56707603|ref|YP_169499.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89256880|ref|YP_514242.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110670074|ref|YP_666631.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115315259|ref|YP_763982.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|156503055|ref|YP_001429120.1| CRS1/YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|187932066|ref|YP_001892051.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254368155|ref|ZP_04984175.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|254369754|ref|ZP_04985764.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|254370121|ref|ZP_04986127.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254373979|ref|ZP_04989461.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|254874424|ref|ZP_05247134.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953622|ref|ZP_06558243.1| RNA-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|379716863|ref|YP_005305199.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725467|ref|YP_005317653.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|385792474|ref|YP_005825450.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|385794226|ref|YP_005830632.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|421755092|ref|ZP_16192045.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|422939171|ref|YP_007012318.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|423051252|ref|YP_007009686.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
gi|54113941|gb|AAV29604.1| NT02FT1076 [synthetic construct]
gi|56604095|emb|CAG45094.1| RNA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89144711|emb|CAJ80042.1| RNA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110320407|emb|CAL08477.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115130158|gb|ABI83345.1| RNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134253965|gb|EBA53059.1| RNA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|151568365|gb|EDN34019.1| RNA-binding protein [Francisella tularensis subsp. tularensis
FSC033]
gi|151571699|gb|EDN37353.1| RNA-binding protein [Francisella novicida GA99-3548]
gi|156253658|gb|ABU62164.1| CRS1 / YhbY domain, RNA-binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122713|gb|EDO66842.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC022]
gi|187712975|gb|ACD31272.1| RNA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254840423|gb|EET18859.1| RNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158761|gb|ADA78152.1| hypothetical protein NE061598_02575 [Francisella tularensis subsp.
tularensis NE061598]
gi|328676620|gb|AEB27490.1| RNA binding protein [Francisella cf. novicida Fx1]
gi|377826916|gb|AFB80164.1| RNA binding protein [Francisella tularensis subsp. tularensis
TI0902]
gi|377828540|gb|AFB78619.1| RNA binding protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|407294322|gb|AFT93228.1| RNA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|409088966|gb|EKM89021.1| hypothetical protein B343_02578 [Francisella tularensis subsp.
tularensis 80700075]
gi|421951974|gb|AFX71223.1| hypothetical protein F92_08870 [Francisella tularensis subsp.
holarctica F92]
Length = 92
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 190 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEI 249
K V +G +G+ + VIL + L HQ +KV V EE ++IA+E+ + T +++I
Sbjct: 16 LKPVVLMGEKGLTENVILEIDLALASHQLIKVKVGRLPKEEKQQIASEITQATRSELVQI 75
Query: 250 HEENTIIMYR 259
N +++YR
Sbjct: 76 I-GNILVLYR 84
>gi|254448654|ref|ZP_05062112.1| rhomboid family protein, putative [gamma proteobacterium HTCC5015]
gi|198261662|gb|EDY85949.1| rhomboid family protein, putative [gamma proteobacterium HTCC5015]
Length = 522
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 14/153 (9%)
Query: 303 EQELELLRAQAETRSENRSDAAEDVQNTELDKPDFGSIPSMMECSENDPTTESLMASDSE 362
EQE++ LRAQA +S + AA + L P ++ ++ CS+ P + + +++
Sbjct: 341 EQEIQ-LRAQALEKSLDFKGAAVHYRKLWLANPSIETLAALFRCSKTSPESPAYVSAVKG 399
Query: 363 DLSDIFETDSETETEEKAELRPLYLDQFD-------KFPVQNDEEHEDFEEHLRQISIDS 415
L S+ T+ +A ++LD D K + N++ + L Q I +
Sbjct: 400 ALK------SDMATQNQALCASIFLDFLDKKWSTSNKPKLSNEQYQVGAKLLLDQDKIQA 453
Query: 416 RNAKSLGKDEDSSHFDEVDKMFLRAASLLKKQK 448
+ G + S HF++ ++ ++ + KKQK
Sbjct: 454 ADKLIAGMLKHSKHFEQAPQLAMQLSLAYKKQK 486
>gi|427737379|ref|YP_007056923.1| putative oxidoreductase, aryl-alcohol dehydrogenase like protein
[Rivularia sp. PCC 7116]
gi|427372420|gb|AFY56376.1| putative oxidoreductase, aryl-alcohol dehydrogenase like protein
[Rivularia sp. PCC 7116]
Length = 326
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 281 KALDKSKYRDGLR--AVKKYIPKLEQELELLRAQAETRSENRSDAAED------------ 326
K DKSKY G+R K+ IP + LE LRA AE+R++ + A +
Sbjct: 222 KYTDKSKYPQGIRNFLFKQLIPGAKSLLECLRAVAESRNKTMAQVAINWCICKGTIPIPG 281
Query: 327 VQNTELDKPDFGSIPSMMECSENDPTTESLMASDSEDLSDIFET 370
+N E + + G++ ++ E ++ ++D + + +IF+T
Sbjct: 282 AKNAEQARQNIGALGWELDAGEIAELDKAAASTDKKMVQNIFQT 325
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,767,784,061
Number of Sequences: 23463169
Number of extensions: 281988925
Number of successful extensions: 1298389
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 983
Number of HSP's that attempted gapping in prelim test: 1290197
Number of HSP's gapped (non-prelim): 7390
length of query: 449
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 303
effective length of database: 8,933,572,693
effective search space: 2706872525979
effective search space used: 2706872525979
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)