Query 013147
Match_columns 449
No_of_seqs 194 out of 615
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 05:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 100.0 4.1E-29 1.4E-33 212.4 14.1 91 174-266 1-91 (104)
2 1jo0_A Hypothetical protein HI 100.0 1.5E-28 5.1E-33 206.5 13.8 88 174-262 2-89 (98)
3 3p04_A Uncharacterized BCR; SE 41.7 1.1E+02 0.0037 25.1 7.7 57 207-265 19-78 (87)
4 3ka5_A Ribosome-associated pro 26.1 90 0.0031 24.6 4.6 47 217-264 1-50 (65)
5 3sbx_A Putative uncharacterize 25.4 83 0.0029 28.7 5.0 36 181-217 129-164 (189)
6 1uii_A Geminin; human, DNA rep 24.2 1.2E+02 0.004 25.2 5.1 32 278-311 36-67 (83)
7 2h9u_A DNA/RNA-binding protein 24.1 2.8E+02 0.0095 23.2 7.5 66 191-256 6-74 (102)
8 3c1y_A DNA integrity scanning 24.1 1.1E+02 0.0036 31.2 5.9 33 228-260 125-158 (377)
9 2lw1_A ABC transporter ATP-bin 21.7 1.1E+02 0.0038 24.4 4.5 32 289-320 21-52 (89)
10 2pnv_A Small conductance calci 21.4 96 0.0033 22.7 3.6 25 290-314 16-40 (43)
11 3lup_A DEGV family protein; PS 20.5 3.7E+02 0.013 25.4 8.6 61 183-244 182-256 (285)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=4.1e-29 Score=212.42 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHhhhccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 013147 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253 (449)
Q Consensus 174 ~LT~EQRk~LRKlGhkLKPVV~IGKrGVTdgVIeeIh~Awk~HELVKVKVkqns~ed~keiAeeLee~SGGeLVQViIG~ 253 (449)
|||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.+++.++++++|++|++.|||++||+ ||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~-IG~ 79 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV-IGS 79 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred EEEEEeCCCCCCC
Q 013147 254 TIIMYRGKNYAQP 266 (449)
Q Consensus 254 tIILYRGKNY~rP 266 (449)
++||||++. ..|
T Consensus 80 ~~VLYR~~~-~~~ 91 (104)
T 1rq8_A 80 MIVIYRESK-ENK 91 (104)
T ss_dssp EEEEEECCC-SCC
T ss_pred EEEEEeCCC-CCC
Confidence 999999976 444
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=1.5e-28 Score=206.53 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHhhhccCCCeeeeCCCCCcHHHHHHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEeeCc
Q 013147 174 ILTPEEHFYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIHEEN 253 (449)
Q Consensus 174 ~LT~EQRk~LRKlGhkLKPVV~IGKrGVTdgVIeeIh~Awk~HELVKVKVkqns~ed~keiAeeLee~SGGeLVQViIG~ 253 (449)
.||++||+|||++||+|+|+|+||++|||++|+++|++||++||||||+|.++++++++++|++|++.|||++||+ ||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~-IG~ 80 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT-IGH 80 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE-ETT
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE-ECC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred EEEEEeCCC
Q 013147 254 TIIMYRGKN 262 (449)
Q Consensus 254 tIILYRGKN 262 (449)
++||||++.
T Consensus 81 ~~vLyR~~~ 89 (98)
T 1jo0_A 81 ILVLYRPSE 89 (98)
T ss_dssp EEEEECCCS
T ss_pred EEEEEccCC
Confidence 999999873
No 3
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=41.67 E-value=1.1e+02 Score=25.13 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCeeeEEecCCCHHHHHHHHHHHHH---HhCCEEEEEeeCcEEEEEeCCCCCC
Q 013147 207 LNMHLHWKKHQTLKVIVKTFSAEEVKEIAAELAR---LTGGIVLEIHEENTIIMYRGKNYAQ 265 (449)
Q Consensus 207 eeIh~Awk~HELVKVKVkqns~ed~keiAeeLee---~SGGeLVQViIG~tIILYRGKNY~r 265 (449)
.+|-++|+....|=|.+..-+.++.+++.+.++- ..+|.+.. +|..+.|+=++|.+-
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k--I~~~IFl~~P~~V~i 78 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--IDSVTFAVVPELSNI 78 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE--EETTEEEEECCCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE--EcCCEEEEECCCeEE
Confidence 5799999999999999999999999999999887 67999885 488888888887643
No 4
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=26.09 E-value=90 Score=24.58 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.5
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHhCCEEEEEe---eCcEEEEEeCCCCC
Q 013147 217 QTLKVIVKTFSAEEVKEIAAELARLTGGIVLEIH---EENTIIMYRGKNYA 264 (449)
Q Consensus 217 ELVKVKVkqns~ed~keiAeeLee~SGGeLVQVi---IG~tIILYRGKNY~ 264 (449)
++|+.+--...+-.+++++.+++-. |-.+.=.+ -|.+-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 4677776666677888899998875 44444233 38899999988664
No 5
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.42 E-value=83 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=28.6
Q ss_pred HHHHhhhccCCCeeeeCCCCCcHHHHHHHHHHHHhCC
Q 013147 181 FYFLKMGRKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 217 (449)
Q Consensus 181 k~LRKlGhkLKPVV~IGKrGVTdgVIeeIh~Awk~HE 217 (449)
--+.++|.+-+|++.+|.+|.++.+++-++ ++-...
T Consensus 129 lt~~qlg~~~kPvvlln~~gfw~~l~~~l~-~~~~~G 164 (189)
T 3sbx_A 129 WTEGYLGMHDKSIVVLDPWGHFDGLRAWLS-ELADTG 164 (189)
T ss_dssp HHHHHTTSCCCCEEEECTTCTTHHHHHHHH-HHHHTT
T ss_pred HHHHHhcccCCCEEEecCCccchHHHHHHH-HHHHCC
Confidence 345677888899999999999999998887 444443
No 6
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.16 E-value=1.2e+02 Score=25.23 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHH
Q 013147 278 SRKKALDKSKYRDGLRAVKKYIPKLEQELELLRA 311 (449)
Q Consensus 278 tKrkAL~rS~e~Qr~eslk~~i~~le~~ie~l~~ 311 (449)
.||+||.-++..- +-|..-|..++.+|..|+.
T Consensus 36 ~RR~AL~eaL~EN--~~Lh~~ie~l~eEi~~lk~ 67 (83)
T 1uii_A 36 KRRKALYEALKEN--EKLHKEIEQKDNEIARLKK 67 (83)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4789999998763 2333334444444444444
No 7
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=24.13 E-value=2.8e+02 Score=23.18 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCeeeeCCCCCcHHHHHHHHHHHHh-CCeeeEEecCCCHHHHHHHHHHHHHHh-CCEEEEE-eeCcEEE
Q 013147 191 KNYVPVGRRGIYQGVILNMHLHWKK-HQTLKVIVKTFSAEEVKEIAAELARLT-GGIVLEI-HEENTII 256 (449)
Q Consensus 191 KPVV~IGKrGVTdgVIeeIh~Awk~-HELVKVKVkqns~ed~keiAeeLee~S-GGeLVQV-iIG~tII 256 (449)
...|.||+.|+..-|...+...|.. +.=|.|+-.+..-...-.+|+.|.+.. +|.-||. .+|...|
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i 74 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEI 74 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEE
Confidence 4789999999988888888455654 677888888887778889999999998 6755453 3565554
No 8
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=24.08 E-value=1.1e+02 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhCCEEEEEe-eCcEEEEEeC
Q 013147 228 AEEVKEIAAELARLTGGIVLEIH-EENTIIMYRG 260 (449)
Q Consensus 228 ~ed~keiAeeLee~SGGeLVQVi-IG~tIILYRG 260 (449)
...+..+|.-|.+.|+|.+|-|. ...+|-+|++
T Consensus 125 lGtRHRAA~gise~tdaivIvVSEetG~Isl~~~ 158 (377)
T 3c1y_A 125 TGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYK 158 (377)
T ss_dssp CSHHHHHHHHHHHHHSSEEEEECSSCCCEEEECS
T ss_pred CcHHHHHHHHHHHhcCCEEEEEEccCCcEEEEEC
Confidence 45789999999999999999654 2445666664
No 9
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.75 E-value=1.1e+02 Score=24.38 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=26.7
Q ss_pred HhhhHHHHhhHHHHHHHHHHHHHHHhhhcccc
Q 013147 289 RDGLRAVKKYIPKLEQELELLRAQAETRSENR 320 (449)
Q Consensus 289 ~Qr~eslk~~i~~le~~ie~l~~~~~~~~~~~ 320 (449)
...++.|-.-|..||.+|..|..+|...+-+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~ 52 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFS 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 34488999999999999999999998766543
No 10
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.40 E-value=96 Score=22.74 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHh
Q 013147 290 DGLRAVKKYIPKLEQELELLRAQAE 314 (449)
Q Consensus 290 Qr~eslk~~i~~le~~ie~l~~~~~ 314 (449)
-|.+.|...|..||..++.|..++.
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999998874
No 11
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=20.54 E-value=3.7e+02 Score=25.38 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHhhhccCCCeeeeCCCCC-------------cHHHHHHHHHHHHhCCeeeEEe-cCCCHHHHHHHHHHHHHHhCC
Q 013147 183 FLKMGRKCKNYVPVGRRGI-------------YQGVILNMHLHWKKHQTLKVIV-KTFSAEEVKEIAAELARLTGG 244 (449)
Q Consensus 183 LRKlGhkLKPVV~IGKrGV-------------TdgVIeeIh~Awk~HELVKVKV-kqns~ed~keiAeeLee~SGG 244 (449)
+-+-.+++||++.+-.+|- ...+++.+........ .+|.+ ..++.++.+++.+.|.+..+.
T Consensus 182 ~ig~lL~IKPIl~~~~~G~l~~~~KvRg~kka~~~l~~~~~~~~~~~~-~~v~i~h~~~~e~a~~l~~~l~~~~~~ 256 (285)
T 3lup_A 182 IIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEMTADGE-YDIAIIHSRAQDKAEQLYNLLAKAGLK 256 (285)
T ss_dssp HHHHHTTSCCEEEECTTSCEEEEECCSSHHHHHHHHHHHHHHHGGGSC-EEEEEEESSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHhhCcEEEEEEccCceEEEeeecCCHHHHHHHHHHHHHHhhcCCC-cEEEEEeCCCHHHHHHHHHHHHhhCCC
Confidence 3344578999999975663 3455666666555444 44544 557888899999999887654
Done!