BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013150
(448 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255545042|ref|XP_002513582.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223547490|gb|EEF48985.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 447
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/452 (86%), Positives = 407/452 (90%), Gaps = 9/452 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFR TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRLTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEG
Sbjct: 61 EFMDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGR+IPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRITYSAHTDLSVKFQSHRSRDYTNP LPVAPSAID SG +VGLDGKKLE
Sbjct: 181 LPEHIGPCTLRITYSAHTDLSVKFQSHRSRDYTNPNLPVAPSAIDGSGMFTVGLDGKKLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLHISYSRH+DLSIKVNNDRSRDYT+P+ MVN QPSILGQQPVP
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNPAMVNPQPSILGQQPVPT 360
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSM-PMMGNHPYMPPGSMP--M 417
VG A+ Y+GAQFA P E P+M QP+A AVP SM P M NHPY P G+MP M
Sbjct: 361 VGPPAHPYSGAQFA-PHTEHPVMPQPSAGWTAAVPAGPHSMPPQMNNHPYFPSGAMPPQM 419
Query: 418 GPGMMQMHMPGQSGMQHHHGA-MPPPRPDHMQ 448
GPGMMQ MPG +G+Q GA MPP RP MQ
Sbjct: 420 GPGMMQ--MPGHTGIQ--QGAPMPPYRPGQMQ 447
>gi|147804914|emb|CAN66869.1| hypothetical protein VITISV_013673 [Vitis vinifera]
Length = 755
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/449 (82%), Positives = 399/449 (88%), Gaps = 14/449 (3%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 310 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 369
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT+ADVAGNVLLVTIEG
Sbjct: 370 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGA 429
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD+ETAS+AKNALDGRSIPRYL
Sbjct: 430 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYL 489
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRIT+SAHTDLSVKFQSHRSRDYTNPYLPVA SAID SGQ S+G DG+K+E
Sbjct: 490 LPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVE 549
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFSAFGP+QKIAMFDKNGG+QALIQYPDVQTA+VAK
Sbjct: 550 PESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAK 609
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT +P+++SQPS+LGQQPVP+
Sbjct: 610 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT---SPVLSSQPSVLGQQPVPI 666
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA--------VPPASQSMPMMGNHPYMPP 412
G + +Q+ GAQ+A P +QP++HQP+ AGW PP NHPYMPP
Sbjct: 667 PGPSTHQFEGAQYA-SPSDQPVIHQPS-AGWATSAAAAGAPPPPPQSMPMQQHNHPYMPP 724
Query: 413 GSMPMGPGMMQMHMPGQSGMQHHHGAMPP 441
G+MP P M M Q+G+ AMPP
Sbjct: 725 GTMPPQPVPGMMPMQTQTGLP-QSAAMPP 752
>gi|118488039|gb|ABK95840.1| unknown [Populus trichocarpa]
Length = 442
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/451 (83%), Positives = 396/451 (87%), Gaps = 12/451 (2%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+SVSSQPQFR TQPPSKVLHLRNLPWECTEEEL+ELGKPFGKVVNTKCNVG NRNQAFI
Sbjct: 1 MSSVSSQPQFRLTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGPNRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF+DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG
Sbjct: 61 EFSDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVGGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGR+IP YL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRITYSAHTDLSVKFQSHRSRDYTN LPVAPSAIDA+G SVGLDGKKLE
Sbjct: 181 LPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFS+FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLH+SYSRH+DLSIKVNNDRSRDYT+P+T M+N QPSILGQQPV
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQPSILGQQPVAT 360
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP-MMGNHPYMPPGSMP--M 417
G A+ Y GAQ MM QP+A PP SMP M N+PY+PPG+MP M
Sbjct: 361 HGPPAHTYPGAQ------HHQMMPQPSAGWATGGPPVPHSMPAQMNNNPYLPPGTMPPQM 414
Query: 418 GPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 448
G GMMQ MP G+ H AMPP RP HMQ
Sbjct: 415 GHGMMQ--MPNHGGLP-HAPAMPPYRPGHMQ 442
>gi|359490453|ref|XP_003634092.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Vitis vinifera]
Length = 446
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/449 (82%), Positives = 399/449 (88%), Gaps = 14/449 (3%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT+ADVAGNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD+ETAS+AKNALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRIT+SAHTDLSVKFQSHRSRDYTNPYLPVA SAID SGQ S+G DG+K+E
Sbjct: 181 LPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFSAFGP+QKIAMFDKNGG+QALIQYPDVQTA+VAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT +P+++SQPS+LGQQPVP+
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT---SPVLSSQPSVLGQQPVPI 357
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA--------VPPASQSMPMMGNHPYMPP 412
G + +Q+ GAQ+A P +QP++HQP+ AGW PP NHPYMPP
Sbjct: 358 PGPSTHQFEGAQYA-SPSDQPVIHQPS-AGWATSAAAAGAPPPPPQSMPMQQHNHPYMPP 415
Query: 413 GSMPMGPGMMQMHMPGQSGMQHHHGAMPP 441
G+MP P M M Q+G+ AMPP
Sbjct: 416 GTMPPQPVPGMMPMQTQTGLP-QSAAMPP 443
>gi|356509289|ref|XP_003523383.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 433
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/426 (85%), Positives = 381/426 (89%), Gaps = 21/426 (4%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT ADV GNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE+MGPCTLRITYS H+DLSVKFQSHRSRDYTNPYLPVAPSA++ SGQ VGLDGK+LE
Sbjct: 181 LPEHMGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ+PD QTAVVAK
Sbjct: 241 AESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQFPDTQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT+P+TP VN QPSILGQQ VPM
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPAVNVQPSILGQQSVPM 360
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS--QSMPM-MGNHPYMPPGSMP- 416
+G YNG+Q AGWG PPA+ QSMPM M N+ YMP G+MP
Sbjct: 361 MGPPQQPYNGSQ----------------AGWGTAPPATTVQSMPMQMHNNVYMPSGTMPQ 404
Query: 417 -MGPGM 421
M PGM
Sbjct: 405 QMAPGM 410
>gi|356516021|ref|XP_003526695.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 432
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/425 (85%), Positives = 383/425 (90%), Gaps = 20/425 (4%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRITYS H+DLSVKFQSHRSRDYTNPYLPVAPSA++ SGQ VGLDGK+LE
Sbjct: 181 LPEHVGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD QTAVVAK
Sbjct: 241 TESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLH+SYSRHTDLSIKVNNDRSRDYT+P+TP+VN+QPSI GQQ V M
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIVNAQPSIFGQQSVSM 360
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS-QSMPM-MGNHPYMPPGSMP-- 416
+G + + G+Q AGWG PPA+ QSMPM M N+ YMPPG+MP
Sbjct: 361 MGPSQQPFYGSQ----------------AGWGTAPPAAVQSMPMQMHNNVYMPPGTMPQQ 404
Query: 417 MGPGM 421
M PGM
Sbjct: 405 MAPGM 409
>gi|449456492|ref|XP_004145983.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Cucumis sativus]
Length = 776
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/460 (82%), Positives = 403/460 (87%), Gaps = 19/460 (4%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 324 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 383
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFAD+NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEGT
Sbjct: 384 EFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGT 443
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGRSIPRYL
Sbjct: 444 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYL 503
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LP+++GPC+LRITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID SGQ +VGLDGKKLE
Sbjct: 504 LPDHVGPCSLRITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGSGQFTVGLDGKKLE 563
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTL+VLHMVFSAFGPVQKIAMFDKNGG+QALIQYPDVQTAVVAK
Sbjct: 564 PESNVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTAVVAK 623
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST-PMVNSQPSILGQQPVP 359
EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT+P+ PMVNSQP ++GQ P
Sbjct: 624 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNNPPMVNSQPPVVGQGPGQ 683
Query: 360 ---------MVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS--QSMPMMGNHP 408
M+G + +QYNG Q+ P +QP + P ++GWG+ PA+ SMPM N
Sbjct: 684 GQGQQPPHQMMGPSTHQYNGNQYGPSGEQQPGVQPPQSSGWGSGGPAATYSSMPMH-NPG 742
Query: 409 YMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 448
YMP G+MP GM MP SG+ H PP RPDH Q
Sbjct: 743 YMPSGTMPPQHGM----MPSPSGL--HQTPPPPYRPDHRQ 776
>gi|224135279|ref|XP_002322027.1| predicted protein [Populus trichocarpa]
gi|222869023|gb|EEF06154.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/451 (81%), Positives = 389/451 (86%), Gaps = 7/451 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+SVSSQ QFR TQPPSKVLHLRNLPWECTEEEL+ELGKPFG VVNTKCNVG NRNQAFI
Sbjct: 1 MSSVSSQSQFRLTQPPSKVLHLRNLPWECTEEELVELGKPFGNVVNTKCNVGPNRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD GNVLL+TIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADAGGNVLLITIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEK FQALVQFSD ETASSAKNALDGR+IP YL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRI YS HTDLSVKFQSHRSRDYTNP LPVA SAIDA+G S+GLDGKKLE
Sbjct: 181 LPEHLGPCTLRIAYSGHTDLSVKFQSHRSRDYTNPNLPVAQSAIDANGMFSMGLDGKKLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFS+FGPVQKIAMFDKN GLQALIQYPDVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQALIQYPDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLH+SYSRH DLSIKVNNDRSRDYT+P+ MVN QPSILGQQPV
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHNDLSIKVNNDRSRDYTIPNNVMVNPQPSILGQQPVAT 360
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP-MMGNHPYMPPGSMP--M 417
G ++ Y GAQFA P E M+ QP++ PP SMP M N+PY+PPG+MP M
Sbjct: 361 HGPPSHLYTGAQFA-PTTEHSMIPQPSSGWATGFPPVPNSMPGQMNNNPYLPPGTMPPQM 419
Query: 418 GPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 448
G GMMQ MP G H H AMPP RP HMQ
Sbjct: 420 GHGMMQ--MPSHGGPPHTH-AMPPYRPYHMQ 447
>gi|449522938|ref|XP_004168482.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Cucumis sativus]
Length = 457
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/464 (81%), Positives = 403/464 (86%), Gaps = 23/464 (4%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFAD+NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEGT
Sbjct: 61 EFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGT 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG----QLSVGLDG 236
LP+++GPC+LRITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID SG Q +VGLDG
Sbjct: 181 LPDHVGPCSLRITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGSGQSSLQFTVGLDG 240
Query: 237 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
KKLEPESNVLLASIENMQYAVTL+VLHMVFSAFGPVQKIAMFDKNGG+QALIQYPDVQTA
Sbjct: 241 KKLEPESNVLLASIENMQYAVTLEVLHMVFSAFGPVQKIAMFDKNGGVQALIQYPDVQTA 300
Query: 297 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST-PMVNSQPSILGQ 355
VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT+P+ PMVNSQP ++GQ
Sbjct: 301 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNNPPMVNSQPPVVGQ 360
Query: 356 QPVP---------MVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS--QSMPMM 404
P M+G + +QYNG Q+ P +QP + P ++GWG+ PA+ SMPM
Sbjct: 361 GPGQGQGQQPPHQMMGPSTHQYNGNQYGPSGEQQPGVQPPQSSGWGSGGPAATYSSMPMH 420
Query: 405 GNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHMQ 448
N YMP G+MP GM MP SG+ H PP RPDH Q
Sbjct: 421 -NPGYMPSGTMPPQHGM----MPSPSGL--HQTPPPPYRPDHRQ 457
>gi|363807178|ref|NP_001242348.1| uncharacterized protein LOC100810102 [Glycine max]
gi|255645249|gb|ACU23122.1| unknown [Glycine max]
Length = 428
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/425 (85%), Positives = 383/425 (90%), Gaps = 8/425 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQ QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS+RQEIVNNKT ADVAGNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSDRQEIVNNKTAADVAGNVLLVTIEGE 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE+MGPC+L+ITYS H+DLSVKFQSHRSRDYTNPYLPVA SA++ SGQ VGLDGK+LE
Sbjct: 181 LPEHMGPCSLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD+QTAVVAK
Sbjct: 241 AESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST--PMVNSQPSILGQQPV 358
EALEGHCIYDGGFCKLHISYSRH+DLSIKVNNDRSRDYT+P+ P+VN+QPSILGQ PV
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQPSILGQHPV 360
Query: 359 PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP-- 416
PM G QYNGAQ+A EQ +M Q + AGWG P SQSM M N+PY P +P
Sbjct: 361 PMTGPPPQQYNGAQYA-SVTEQTLMPQ-SQAGWGTAP--SQSMLQMHNNPYTPSAMVPPQ 416
Query: 417 MGPGM 421
PGM
Sbjct: 417 TAPGM 421
>gi|357463843|ref|XP_003602203.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355491251|gb|AES72454.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 828
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/443 (82%), Positives = 391/443 (88%), Gaps = 6/443 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQ QFRYTQPPSKVLHLRNLPWECTEEELIELG PFGKVVNTKCNVG+NRNQAFI
Sbjct: 325 MASVSSQQQFRYTQPPSKVLHLRNLPWECTEEELIELGNPFGKVVNTKCNVGSNRNQAFI 384
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV+NKT ADVAGNVLLVT+EG
Sbjct: 385 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVHNKTAADVAGNVLLVTVEGE 444
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYL
Sbjct: 445 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 504
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
L E++GPCTL+ITYS H+DL+VKFQSHRSRDYTNPYLPVA SAI+ GQ+ +GLDGK+LE
Sbjct: 505 LSEHVGPCTLKITYSGHSDLTVKFQSHRSRDYTNPYLPVAQSAIEGGGQVMIGLDGKRLE 564
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQYAVTLDVLHMVFSAFGP+QKIAMFDKNGGLQALIQYPD QTAVVAK
Sbjct: 565 AESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALIQYPDTQTAVVAK 624
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLH+SYSRHTDLSIKVNNDRSRDYT+P P+VN+QPSILG QPVPM
Sbjct: 625 EALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPMIPVVNTQPSILG-QPVPM 683
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWG-AVPPASQSMPM-MGNHPYMPPGSMPMG 418
A QYNG+Q+ P P M + AGWG +P +QSMP+ M N+ YMP G+MP G
Sbjct: 684 TVPPAQQYNGSQYT--PISDPAMIPQSQAGWGTTLPTVAQSMPLQMHNNIYMPAGNMPPG 741
Query: 419 PGMMQMHMPGQSGMQHHHGAMPP 441
G MQM PG MQ G MPP
Sbjct: 742 NGPMQMQ-PGNGPMQMPPGNMPP 763
>gi|356546193|ref|XP_003541515.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Glycine max]
Length = 428
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/425 (83%), Positives = 377/425 (88%), Gaps = 8/425 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVS+Q QFRYTQPPSKVLHLRNLPWECTE+ELIELGK FGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSTQQQFRYTQPPSKVLHLRNLPWECTEDELIELGKLFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT ADVAGNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGE 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETA+SAK+ALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPC L+ITYS H+DLSVKFQSHRSRDYTNPYLPVA SA++ SGQ VGLDGK+LE
Sbjct: 181 LPEHIGPCGLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQPMVGLDGKRLE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQY VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD+QTAVVAK
Sbjct: 241 AESNVLLASIENMQYTVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST--PMVNSQPSILGQQPV 358
E LEGHCIYDGGFCKLHISYSRHTDLSIKVNN+RSRDYT+P+ P+VN+QPSILGQ PV
Sbjct: 301 ETLEGHCIYDGGFCKLHISYSRHTDLSIKVNNERSRDYTIPNVPPPVVNAQPSILGQHPV 360
Query: 359 PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP-- 416
PM G YNGAQ+AP + M H + AGWG PP QSM M NHPY P +P
Sbjct: 361 PMTGPPPQHYNGAQYAPVTEQTLMSH--SQAGWGTGPP--QSMQQMHNHPYTPSAMVPPQ 416
Query: 417 MGPGM 421
PGM
Sbjct: 417 TTPGM 421
>gi|302143674|emb|CBI22535.3| unnamed protein product [Vitis vinifera]
Length = 1311
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/367 (91%), Positives = 356/367 (97%), Gaps = 3/367 (0%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT+ADVAGNVLLVTIEG
Sbjct: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTSADVAGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD+ETAS+AKNALDGRSIPRYL
Sbjct: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++GPCTLRIT+SAHTDLSVKFQSHRSRDYTNPYLPVA SAID SGQ S+G DG+K+E
Sbjct: 181 LPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVFSAFGP+QKIAMFDKNGG+QALIQYPDVQTA+VAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT +P+++SQPS+LGQQPVP+
Sbjct: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT---SPVLSSQPSVLGQQPVPI 357
Query: 361 VGATANQ 367
G + +Q
Sbjct: 358 PGPSTHQ 364
>gi|297796143|ref|XP_002865956.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
gi|297311791|gb|EFH42215.1| hypothetical protein ARALYDRAFT_495390 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/345 (90%), Positives = 333/345 (96%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFG VVNTKCNVGANRNQAFI
Sbjct: 1 MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF DLNQAI MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVT+EG
Sbjct: 61 EFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTVEGE 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DAR+VSIDVLHLVFSAFGFVHKITTFEKTAG+QALVQFSD ETA+SAKNALDGRSIPRYL
Sbjct: 121 DARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFSDEETATSAKNALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
L E +G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLP+APSAID++GQ++VG+DGKK+E
Sbjct: 181 LAEQVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPIAPSAIDSTGQVAVGVDGKKME 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVF+AFG VQKIAMFDKNGGLQALIQY DVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGDVQKIAMFDKNGGLQALIQYKDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
EALEGHCIYDGGFCKLHI+YSRHTDLSIKVNNDRSRDYT+P+ P+
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 345
>gi|15238677|ref|NP_200130.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
gi|75333813|sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2
gi|9757999|dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like
[Arabidopsis thaliana]
gi|53749130|gb|AAU90050.1| At5g53180 [Arabidopsis thaliana]
gi|55733737|gb|AAV59265.1| At5g53180 [Arabidopsis thaliana]
gi|332008935|gb|AED96318.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
Length = 429
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/339 (90%), Positives = 327/339 (96%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFG VVNTKCNVGANRNQAFI
Sbjct: 1 MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF DLNQAI MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG
Sbjct: 61 EFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGD 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DAR+VSIDVLHLVFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYL
Sbjct: 121 DARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
L E +G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+E
Sbjct: 181 LAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKME 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
EALEGHCIYDGGFCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
>gi|294463038|gb|ADE77057.1| unknown [Picea sitchensis]
Length = 528
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/477 (68%), Positives = 362/477 (75%), Gaps = 40/477 (8%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MAS + QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGK++NTK NVGANRNQAF+
Sbjct: 1 MASTAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIINTKVNVGANRNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAI+M+SYYASSSEPAQVRGKTVYLQYSNRQEIVN+K T DVA NVLLVTIEG
Sbjct: 61 EFADLNQAISMVSYYASSSEPAQVRGKTVYLQYSNRQEIVNSKNTGDVASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDVLHLVFSAFGFVHKI TFEK+AGFQALVQFSD TA+SAKNALDGRSIPRYL
Sbjct: 121 EAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDPNTATSAKNALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++G C+LRIT+SAH DL+VKFQSHRSRDYTNPYLPVAPSAID +GQ +G DGK+ E
Sbjct: 181 LPEHVGLCSLRITFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGTGQFGIGPDGKRRE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVL VF+AFG VQKIA+F+KN G QALIQYPDV TAV AK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLRSVFTAFGTVQKIAIFEKNAGFQALIQYPDVATAVTAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP--- 357
EALEGHCIYDGGFCKLH+SYSRHTDL++KVNNDRSRDYT P+ ++ +Q SILGQQP
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKVNNDRSRDYTSPNPGLLPNQLSILGQQPSAF 360
Query: 358 ---VPMVGA-----------TANQYNGAQFAP--------PPPEQPMMHQPTAAGWGAVP 395
V VG + N Y G P P + ++Q + G
Sbjct: 361 QTTVSAVGGMQVPQSSSLVYSGNNYAGGALPPVQDGVAGVQPVQDWQLNQLSPHPQGPNG 420
Query: 396 PASQSMPMMG---NHPYMP----------PGSMP--MGPGMMQMHMPGQSGMQHHHG 437
S+P +G N YM PG P + P PG S MQ+H G
Sbjct: 421 NVHSSLPFLGFARNQMYMTTAATPPPPVFPGQSPLSLAPYTSHTTFPGLSPMQNHSG 477
>gi|224118178|ref|XP_002317750.1| predicted protein [Populus trichocarpa]
gi|222858423|gb|EEE95970.1| predicted protein [Populus trichocarpa]
Length = 350
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/356 (85%), Positives = 318/356 (89%), Gaps = 7/356 (1%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
SVSSQPQFR TQPPSKVLHLRNLPWEC E ++ C + F
Sbjct: 1 SVSSQPQFRLTQPPSKVLHLRNLPWECAYSMCKEFCFINNVLLVASCC-------CVVLF 53
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
+DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG DA
Sbjct: 54 SDLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVGGNVLLVTIEGADA 113
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD ETASSAKNALDGR+IP YLLP
Sbjct: 114 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLP 173
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++GPCTLRITYSAHTDLSVKFQSHRSRDYTN LPVAPSAIDA+G SVGLDGKKLEPE
Sbjct: 174 EHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAPSAIDANGMFSVGLDGKKLEPE 233
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVTLDVLHMVFS+FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA
Sbjct: 234 SNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 293
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
LEGHCIYDGGFCKLH+SYSRH+DLSIKVNNDRSRDYT+P+T M+N QPSILGQQPV
Sbjct: 294 LEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQPSILGQQPV 349
>gi|116787007|gb|ABK24339.1| unknown [Picea sitchensis]
Length = 491
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 288/353 (81%), Positives = 323/353 (91%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MAS + QPQFRYTQPPSKVLHLRNLPWECTEEELIEL KPFG++VNTKCNVGAN NQAF+
Sbjct: 1 MASSAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANHNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAM+SYYASSSEPAQVRGK+VYLQYSNRQEIVNNK+T DVA NVLLVTIEG
Sbjct: 61 EFADLNQAIAMVSYYASSSEPAQVRGKSVYLQYSNRQEIVNNKSTGDVASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
D+ VSIDVLHLVFSAFGFVHKI TFEKTAGFQALVQFSD +TA+SA++ALDGRSIPRYL
Sbjct: 121 DSGDVSIDVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDADTAASARSALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE++ C LRI++SAHTDL+VKFQSHRSRDYTNP LPV PSAID +GQ +VG DGK+ E
Sbjct: 181 LPEHVASCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVNPSAIDGAGQFTVGPDGKRRE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLASIENMQYAVT+DVL+ VFSAFG VQKIA+F+KNGG QALIQYPD+ TAV+AK
Sbjct: 241 LESNVLLASIENMQYAVTVDVLNTVFSAFGRVQKIAIFEKNGGFQALIQYPDIATAVLAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL 353
EALEGHCIYDGG+CKLH+SYSRHTDL++K NNDRSRDYT+P++ M+ +QP L
Sbjct: 301 EALEGHCIYDGGYCKLHLSYSRHTDLNVKGNNDRSRDYTIPASGMLPAQPPSL 353
>gi|168027197|ref|XP_001766117.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682760|gb|EDQ69176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 488
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 321/466 (68%), Positives = 359/466 (77%), Gaps = 42/466 (9%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M S + QPQFRYTQPPSKVLH+RNLPWEC+EEELIEL KPFGKVVNTK NVGAN NQAF+
Sbjct: 1 MTSTAGQPQFRYTQPPSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAM+SYYASSSEPAQVRGKTVYLQYSNRQEIV +K + DVA NVLLVTIEG
Sbjct: 61 EFADLNQAIAMVSYYASSSEPAQVRGKTVYLQYSNRQEIVTSKNSGDVASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDVLHLVFSAFGFVHKI TFEK+AGFQALVQFSD TAS+AK+AL+GRSIPRYL
Sbjct: 121 EAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAAKSALEGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LP+++GPC LRI++SAH DL+VKFQSHRSRDYTNPYLPVAPSAID SGQ SVG DGK+ E
Sbjct: 181 LPDHVGPCHLRISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSVGPDGKRRE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLL SIENMQYAVT+DV+H VFSAFG VQKIA+F+K+ G QAL+QYPD+ TAV AK
Sbjct: 241 PESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQYPDIPTAVGAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIK------VNNDRSRDYT---LPST--PMVNSQ 349
EALEGHCIYDGGFCKLH+SYSRHTDL++K VNNDRSRDYT LP+T P+++
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKALSLLYVNNDRSRDYTNPGLPATQPPVLSQA 360
Query: 350 PSILGQQPVPMVGATANQYNGAQFAPPPPEQP------MMHQ----------PTAAGWGA 393
P + QQ G+ Q Q + P P QP M HQ P A+G
Sbjct: 361 PGVAQQQSWDTEGSGKAQ----QVSGPMPGQPMSGPMYMSHQHGGAVGHHGPPGASGSYQ 416
Query: 394 VPPA--SQSMPMMGNHPYM-PPGSMPMGPGMMQMHMPGQSGMQHHH 436
PP + PM G P M PPG MGPGM Q G Q HH
Sbjct: 417 GPPGPVTSMGPMSGPGPSMAPPGY--MGPGMHQQ------GQQSHH 454
>gi|294461640|gb|ADE76380.1| unknown [Picea sitchensis]
Length = 511
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 289/376 (76%), Positives = 325/376 (86%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M SV+ QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGK+VNTK NVG+NRNQAF+
Sbjct: 1 MGSVAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNRNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFA+LNQAIAM+SY+ASS E AQVRGKTVYLQYSNR EIVN+K + D A NVLLVTIEG
Sbjct: 61 EFAELNQAIAMVSYHASSPEQAQVRGKTVYLQYSNRHEIVNSKNSGDEASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDVLHLVFSAFGFVHKI TFEK+AGFQALVQFSD +TASSA++ALDGRSIPRYL
Sbjct: 121 EAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDVDTASSARSALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
L E++GPC LRI++SAHTDL+VKFQSHRSRDYTNP LPVAPSAID +GQ +G DG++ E
Sbjct: 181 LAEHVGPCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPVAPSAIDGTGQFGIGPDGQRRE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P SNVLLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KN G QALIQY D+ TAV+AK
Sbjct: 241 PASNVLLASIENMQYAVTVDVLHTVFSAFGIVQKIAMFEKNAGWQALIQYADIPTAVIAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGH IY GG+CKLH+SYSRHTDL++KVNNDRSRDYTLP ++ +Q SILGQQP +
Sbjct: 301 EALEGHFIYAGGYCKLHLSYSRHTDLNVKVNNDRSRDYTLPKVGILQNQLSILGQQPSSL 360
Query: 361 VGATANQYNGAQFAPP 376
Q A + P
Sbjct: 361 PAGLGGQPTSAPYMYP 376
>gi|302789199|ref|XP_002976368.1| hypothetical protein SELMODRAFT_104811 [Selaginella moellendorffii]
gi|302811042|ref|XP_002987211.1| hypothetical protein SELMODRAFT_125500 [Selaginella moellendorffii]
gi|300145108|gb|EFJ11787.1| hypothetical protein SELMODRAFT_125500 [Selaginella moellendorffii]
gi|300155998|gb|EFJ22628.1| hypothetical protein SELMODRAFT_104811 [Selaginella moellendorffii]
Length = 440
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/358 (79%), Positives = 318/358 (88%), Gaps = 7/358 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M S +SQPQFRYTQPPSKVLH+RNLPWECTEEELIEL K FGKVVNTKCNVG NRNQAF+
Sbjct: 1 MTSTASQPQFRYTQPPSKVLHIRNLPWECTEEELIELCKMFGKVVNTKCNVGTNRNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAM+S+YASSSEPAQVRGKTVYLQYSNRQEIVN+K T DVA NVLLVTIEG
Sbjct: 61 EFADLNQAIAMVSFYASSSEPAQVRGKTVYLQYSNRQEIVNSKNTGDVASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDVLHLVFSAFGFVHKI TFEKTAGFQALVQFSD TAS+A+ ALDGRSIPRYL
Sbjct: 121 EAGDVSIDVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDANTASAARQALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA-SGQLSVGLDGKKL 239
LPE++G C LRI++SAHTDL+VKFQSHRSRDYTNPYLPVAPSAI+ S + + G DGK+
Sbjct: 181 LPEHVGSCHLRISFSAHTDLNVKFQSHRSRDYTNPYLPVAPSAINGISQEYTTGPDGKRK 240
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
EPESNVLLASIENMQY+VT+DVLH VF+AFGP+QKIA+F+KN G QALIQY DV TAV A
Sbjct: 241 EPESNVLLASIENMQYSVTIDVLHTVFAAFGPIQKIAIFEKNAGFQALIQYADVTTAVAA 300
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 357
KEALEGHCIY+GG+CKLH+SYSRHTDL++KVNNDRSRDYT + PS+LG+ P
Sbjct: 301 KEALEGHCIYEGGYCKLHLSYSRHTDLNVKVNNDRSRDYT------SSQSPSVLGKAP 352
>gi|168060645|ref|XP_001782305.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666235|gb|EDQ52895.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 283/344 (82%), Positives = 312/344 (90%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M S + QPQFRYTQPPSKVLH+RNLPWEC+EEELIEL KPFGKVVNTK NVGAN NQAF+
Sbjct: 1 MTSTAGQPQFRYTQPPSKVLHVRNLPWECSEEELIELCKPFGKVVNTKVNVGANHNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFADLNQAIAM+SYYASSSEPAQVRGKTVYLQYSNRQEIV +K + DVA NVLLVTIEG
Sbjct: 61 EFADLNQAIAMVSYYASSSEPAQVRGKTVYLQYSNRQEIVTSKNSGDVASNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDVLHLVFSAFGFVHKI TFEK+AGFQALVQFSD TAS+AK+AL+GRSIPRYL
Sbjct: 121 EAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAAKSALEGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LP+++GPC LRI++SAH DL+VKFQSHRSRDYTNPYLPVAPSAID SGQ SVG DGK+ E
Sbjct: 181 LPDHVGPCHLRISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQFSVGPDGKRRE 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLL SIENMQYAVT+DV+H VFSAFG VQKIA+F+K+ G QAL+QYPD+ TAV AK
Sbjct: 241 PESNVLLVSIENMQYAVTIDVIHTVFSAFGFVQKIAIFEKSAGFQALVQYPDIPTAVGAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
EALEGHCIYDGGFCKLH+SYSRHTDL++KVNNDRSRDYT P P
Sbjct: 301 EALEGHCIYDGGFCKLHLSYSRHTDLNVKVNNDRSRDYTNPGLP 344
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 7/123 (5%)
Query: 243 SNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
SNVLL +IE ++ V++DVLH+VFSAFG V KIA F+K+ G QAL+Q+ D TA AK
Sbjct: 110 SNVLLVTIEGVEAGDVSIDVLHLVFSAFGFVHKIATFEKSAGFQALVQFSDANTASAAKS 169
Query: 302 ALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
ALEG I G C L IS+S H DL++K + RSRDYT P P+ S GQ
Sbjct: 170 ALEGRSIPRYLLPDHVGPCHLRISFSAHNDLNVKFQSHRSRDYTNPYLPVAPSAIDGSGQ 229
Query: 356 QPV 358
V
Sbjct: 230 FSV 232
>gi|225452859|ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1
[Vitis vinifera]
gi|296082938|emb|CBI22239.3| unnamed protein product [Vitis vinifera]
Length = 449
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 304/455 (66%), Positives = 349/455 (76%), Gaps = 19/455 (4%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S QPQFRYTQ PSKVLHLRNLPWECTEEEL+EL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 LDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+QF+D ETASSA+NALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++G C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+AI+ Q ++G DGKK EPE
Sbjct: 182 EHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPALGPDGKKKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG+QALIQYPDV TA VAKEA
Sbjct: 242 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-------PSILGQ 355
LEGHCIYDGG+CKLH+SYSRHTDL++K ++DRSRDYT+P + ++ Q + + Q
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQ 361
Query: 356 QPVPMVGATANQYNGAQFAPPPPEQPMMH---QPTAAGWGAVPPASQSMPMMGNHPYMPP 412
P T + A P P M A+ A P + + +P PP
Sbjct: 362 NPQAAPLYTGHDAAAAAAVQVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAYP-APP 420
Query: 413 GSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHM 447
GS P+ P + PG GA PP RP +
Sbjct: 421 GSSPLTPAVPPNVRPG--------GASPPGRPPYF 447
>gi|118488224|gb|ABK95931.1| unknown [Populus trichocarpa]
Length = 473
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 304/468 (64%), Positives = 347/468 (74%), Gaps = 26/468 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S QPQFRYTQ PSKVLHLRNLPWECTEEELIEL KPFG++VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
D NQAI M+SYYASSS+PAQVRGKTVY+QYSNR EIVNNK+ D GNVLLVTIEG +A
Sbjct: 62 VDQNQAIQMVSYYASSSDPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFG++HKI TFEK AGFQAL+QF+D+ETASSA+NALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGYLHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++G C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+AI+ Q +VG DGKK EPE
Sbjct: 182 EHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGPVQPTVGADGKKKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG QALIQYPDV TA VAKE
Sbjct: 242 SNVLLASIENMQYAVTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKET 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV---- 358
LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q L P
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASLIAAQAPGLHTAPTMWQN 361
Query: 359 PMVGA--TANQYNGAQFAP---PPPEQPMMH---QPTAAGWGAVPPA--SQSMPMMGNHP 408
P G+ T N Y P PP + P Q G+ +VP Q+ P
Sbjct: 362 PQAGSMYTGNNYATTAAVPVQVPPGQVPAWDPTMQAGGQGYASVPGTYPGQTYPTPPASA 421
Query: 409 Y----MPPGSMPM--------GPGMMQMHMPGQSGMQHHHGAMPPPRP 444
Y +P GS P M M PG GA PP +P
Sbjct: 422 YATAAIPAGSSPRSHSSPISHSVASMAMSHPGMQSNLRPSGASPPGQP 469
>gi|224141415|ref|XP_002324068.1| predicted protein [Populus trichocarpa]
gi|222867070|gb|EEF04201.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 302/467 (64%), Positives = 344/467 (73%), Gaps = 28/467 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S QPQFRYTQ PSKVLHLRNLPWECTEEELIEL +PFGK+VNTKCNVG NRNQAF+EF
Sbjct: 2 STSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
A+ NQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ D GNVLLVTIEG +A
Sbjct: 62 AEQNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP----R 178
VSIDV+HLVFSAFG+VHKI TFEK AGFQAL+QF+D ETASSA+NALDGR+I R
Sbjct: 122 GDVSIDVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRNIMFKKFR 181
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKK 238
YLLPE++G C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+AID Q +VG DGKK
Sbjct: 182 YLLPEHVGSCNLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIDGPVQSTVGADGKK 241
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
EPESNVLLASIENMQYAVT+DVLH VFS FG VQKIA+F+KNGG QALIQYPDV TA V
Sbjct: 242 KEPESNVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQALIQYPDVATAAV 301
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
AKE LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P + +Q L P
Sbjct: 302 AKETLEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIPDASFLTAQAPGLHTAPT 361
Query: 359 ----PMVGAT--ANQYNGAQFAPP--PPEQPMMHQPT----AAGWGAV----PPASQSMP 402
P G+ + Y AP PP Q P+ G+ +V P + P
Sbjct: 362 TWQNPQAGSMYLGSNYATTAAAPAQVPPGQVAAWDPSMQAGGPGYSSVRGMYPGQTYPTP 421
Query: 403 MMGNHPYMPPG------SMPMGPGMMQMHM--PGQSGMQHHHGAMPP 441
+PPG S P+ PG+ M M PG GA PP
Sbjct: 422 PAYASSALPPGSSPHSYSSPISPGVASMGMTHPGVQPNMRPGGASPP 468
>gi|54290862|dbj|BAD61523.1| polypyrimidine tract-binding protein 1-like [Oryza sativa Japonica
Group]
gi|125571201|gb|EAZ12716.1| hypothetical protein OsJ_02633 [Oryza sativa Japonica Group]
gi|215740848|dbj|BAG97004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/419 (69%), Positives = 331/419 (78%), Gaps = 25/419 (5%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
S QPQFRYTQPPSKV+HLRNLPW+CTEEEL+ELG PFGKVVNTKCNVGANRNQAF+EFA
Sbjct: 2 ASGQPQFRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFA 61
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
D NQAIAMISY+ASS+EPAQVRGK VYLQYSNRQEIVN+K++ + AGNVLLV++EG
Sbjct: 62 DQNQAIAMISYFASSAEPAQVRGKNVYLQYSNRQEIVNSKSSGEAAGNVLLVSMEGVLPD 121
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
VSIDVLHLVFSAFGFV KI TFEK +G+QAL+QF DTETASSAK ALDGR IP YLLPE
Sbjct: 122 AVSIDVLHLVFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPE 181
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243
PCTLRI YSAHT L+VKFQSHRSRDYTNPYLPVAPSAID SG DGKK E ES
Sbjct: 182 LDVPCTLRINYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSGP-----DGKKQEAES 236
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
NVLLAS+ENMQY VT+DVLH VFSAFG VQKIA+F+KN G QALIQYPD+QTAV AKEAL
Sbjct: 237 NVLLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEAL 296
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA 363
EGH IY+GG+CKLH+++SRHTDL++KVNN+R RDYT +T ++QPSILG QPV
Sbjct: 297 EGHSIYEGGYCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQPSILGPQPV----- 351
Query: 364 TANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQ-SMPMMGNHPYMPPGSMPMGPGM 421
Y+GA + P++A VPP + + P +HPY +P P +
Sbjct: 352 ----YSGA----------YNNAPSSATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAV 396
>gi|218201199|gb|EEC83626.1| hypothetical protein OsI_29352 [Oryza sativa Indica Group]
Length = 461
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 284/427 (66%), Positives = 330/427 (77%), Gaps = 22/427 (5%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG +
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDI 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
SIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLLPE++
Sbjct: 125 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHV 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ Q ++G DGK EPESNV
Sbjct: 185 PTCHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDGKIKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN----------SQPSILGQ 355
HCIYDGG+CKLH+SYSRHTDL++K +++RSRDYT+ S P S P + Q
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAWQ 364
Query: 356 QPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAG-WGAVPPASQSMPMMGNHPYMPPGS 414
P +A+ Y A P + P + AG +G+ A + PMM PGS
Sbjct: 365 NTAP----SASFYGSTAAATPVGQVPAWNPNMQAGAFGSASSAYTTQPMM-------PGS 413
Query: 415 MPMGPGM 421
+P PG+
Sbjct: 414 VPHYPGI 420
>gi|115476578|ref|NP_001061885.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|42407521|dbj|BAD10638.1| putative polypyrimidine tract-binding protein homolog [Oryza sativa
Japonica Group]
gi|113623854|dbj|BAF23799.1| Os08g0436000 [Oryza sativa Japonica Group]
gi|215695278|dbj|BAG90469.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640621|gb|EEE68753.1| hypothetical protein OsJ_27445 [Oryza sativa Japonica Group]
Length = 461
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 284/427 (66%), Positives = 330/427 (77%), Gaps = 22/427 (5%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG +
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDI 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
SIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLLPE++
Sbjct: 125 SIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEHV 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ Q ++G DGK EPESNV
Sbjct: 185 PTCHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPTLGPDGKIKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGTVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN----------SQPSILGQ 355
HCIYDGG+CKLH+SYSRHTDL++K +++RSRDYT+ S P S P + Q
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVSSDPSAQMQAAAQAPGPSTPGVAWQ 364
Query: 356 QPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAG-WGAVPPASQSMPMMGNHPYMPPGS 414
P +A+ Y A P + P + AG +G+ A + PMM PGS
Sbjct: 365 NTAP----SASFYGSTAAATPVGQVPAWNPNMQAGAFGSASSAYPTQPMM-------PGS 413
Query: 415 MPMGPGM 421
+P PG+
Sbjct: 414 VPHYPGI 420
>gi|357130514|ref|XP_003566893.1| PREDICTED: polypyrimidine tract-binding protein homolog 2-like
[Brachypodium distachyon]
Length = 544
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/371 (74%), Positives = 312/371 (84%), Gaps = 6/371 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MAS PQFRYTQPPSKV+H+RNLPWECT+EEL ELG PFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MAS-GGNPQFRYTQPPSKVIHVRNLPWECTDEELAELGSPFGKVVNTKCNVGANRNQAFI 59
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFAD NQAIAMISYYASS+EPAQVRGK VYLQYSNRQEIVN+K+T D AGNVLLVT+EG
Sbjct: 60 EFADQNQAIAMISYYASSAEPAQVRGKNVYLQYSNRQEIVNSKSTGDAAGNVLLVTMEGV 119
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
VSIDVLHLVFSAFG+VHKI TFEK +G+QAL+QFSD ETASSAK ALDGR IP YL
Sbjct: 120 LPDAVSIDVLHLVFSAFGYVHKIATFEKASGYQALIQFSDAETASSAKAALDGRCIPSYL 179
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LP+ G CTLRI YSAH+ L+VKFQSHRSRDYTNPYLP+APSAID S GLDGKK E
Sbjct: 180 LPDLDGACTLRINYSAHSVLNVKFQSHRSRDYTNPYLPLAPSAIDGS-----GLDGKKQE 234
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESNVLLAS+ENMQY VT+D LH VFSAFG V KIA+F+KN G ALIQYPD+QTAV A+
Sbjct: 235 AESNVLLASVENMQYIVTIDALHEVFSAFGFVHKIAIFEKNSGFHALIQYPDIQTAVKAR 294
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGH IY+GG+CKLH+++SRHTDL++++NN+R RDYT S+ N +PSILG QP
Sbjct: 295 EALEGHSIYEGGYCKLHLTFSRHTDLNVRINNERGRDYTGGSSAPANYEPSILGPQPTLP 354
Query: 361 VGATANQYNGA 371
VGA A Y+ A
Sbjct: 355 VGAVAPPYSSA 365
>gi|356531748|ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/347 (76%), Positives = 307/347 (88%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+Q QFRYTQ PSKVLHLRNLPWEC+EEEL EL KPFGK++NTKCNVGANRNQAF+EF
Sbjct: 2 STSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 ADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AI+ + Q +VG DGK+ EPE
Sbjct: 182 AHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+ TA A+EA
Sbjct: 242 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ 348
>gi|356568676|ref|XP_003552536.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Glycine max]
Length = 496
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/370 (73%), Positives = 316/370 (85%), Gaps = 3/370 (0%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S SSQ QFRYTQ PSKVLHLRNLPWEC+EEEL EL +PFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 VDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AI+ + Q +VG DGK+ EP+
Sbjct: 182 AHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPD 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+ TA A+EA
Sbjct: 242 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-PSILGQQP--VP 359
LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q P+ Q P P
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPATAWQNPQAAP 361
Query: 360 MVGATANQYN 369
M +A Y+
Sbjct: 362 MYPGSAPAYH 371
>gi|413922343|gb|AFW62275.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 462
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 282/422 (66%), Positives = 327/422 (77%), Gaps = 23/422 (5%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIP+YLLPE++
Sbjct: 125 TIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHI 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
C +RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNV
Sbjct: 185 SACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKIKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS----------TPMVNSQPSILGQ 355
HCIYDGG+CKLH+SYSRHTDL++K ++DRSRDYTL P+++S P + Q
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDDRSRDYTLSDPNAQLQAAAQAPVISS-PGVAWQ 363
Query: 356 QP-----VPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNH-PY 409
P P G+TA Q PP P M P G+ + A + P+M N PY
Sbjct: 364 NPASAPAAPFYGSTAASTPVGQ---PPAWNPNMQAP---GFASASTAYPNPPLMANSTPY 417
Query: 410 MP 411
P
Sbjct: 418 YP 419
>gi|297832822|ref|XP_002884293.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
gi|297330133|gb|EFH60552.1| polypyrimidine tract-binding [Arabidopsis lyrata subsp. lyrata]
Length = 398
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/416 (67%), Positives = 324/416 (77%), Gaps = 30/416 (7%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQFSD ETAS+A+NALDGRSIPRYLLP
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFSDVETASAARNALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++G C LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +
Sbjct: 182 EHVGSCNLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEA
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAIAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q+ P V
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLAQKG-PGVS 353
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 418
A+ APP Q Q +G+G PYM P S P G
Sbjct: 354 AS---------APPTGWQNPQVQTQYSGYGG-------------SPYMYPSSDPNG 387
>gi|77745463|gb|ABB02630.1| polypyrimidine tract-binding-like [Solanum tuberosum]
Length = 437
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/394 (69%), Positives = 316/394 (80%), Gaps = 5/394 (1%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKVLHLRNLPW+C++EEL+EL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 ADLNQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFV KI TFEK AGFQAL+QFSD TAS+A+ ALDGRSIP+YLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++ C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+A++ Q VG DGKK EPE
Sbjct: 182 EHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVL AS+ENMQYAVT+DVL+ VFSAFG VQKIA+F+KNG QALIQYPDV A AK+A
Sbjct: 242 SNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ--PSILGQQPV-- 358
LEGHCIYDGG+CKLH+SYSRHTDL+++ +D+SRDYT+P + ++ Q ++ PV
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVPESSLLAMQQASAVHATPPVWH 361
Query: 359 -PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P G + A P + P P GW
Sbjct: 362 NPQSGPVQSSAGYATTGTVPGQAPPTWNPNLQGW 395
>gi|242058047|ref|XP_002458169.1| hypothetical protein SORBIDRAFT_03g028150 [Sorghum bicolor]
gi|241930144|gb|EES03289.1| hypothetical protein SORBIDRAFT_03g028150 [Sorghum bicolor]
Length = 553
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/364 (74%), Positives = 309/364 (84%), Gaps = 7/364 (1%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MAS QPQFRYTQPPSKVLHLRNLPW+CT EEL+ELG PFGKVVNTKC VGANRNQAFI
Sbjct: 1 MAS-GGQPQFRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFI 59
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFAD NQAIAMISYYASS+EPAQVRGK VYLQYSNRQEI+NNKTT + +GNVLLV +EG
Sbjct: 60 EFADQNQAIAMISYYASSAEPAQVRGKNVYLQYSNRQEIINNKTTGEGSGNVLLVGMEGV 119
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
VSIDVLH+VFSAFGFVHKI TFEK +G+QAL+QFSD ETA+SAK ALDGR IP YL
Sbjct: 120 APDSVSIDVLHVVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYL 179
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE G CTL+I+YSAH+ L+VK+QSHRSRD+TNPYLP SA DAS GLDGKK E
Sbjct: 180 LPELDGACTLKISYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDAS-----GLDGKKQE 234
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESN+LLAS+ENMQY VT+DVLH VFSAFG VQKIA+F+KN G QALIQYPD+QTAV AK
Sbjct: 235 AESNILLASVENMQYVVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAVAAK 293
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGH IY+GG+CKLH+++SRHT+L++KVNN+R RDYT + + +PSILG QP+P
Sbjct: 294 EALEGHSIYEGGYCKLHLTFSRHTELNVKVNNERGRDYTKGNVTPSSDRPSILGPQPIPN 353
Query: 361 VGAT 364
VGA
Sbjct: 354 VGAA 357
>gi|15232047|ref|NP_186764.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|75336151|sp|Q9MAC5.1|PTBP1_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 1
gi|6714473|gb|AAF26159.1|AC008261_16 putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
gi|222423255|dbj|BAH19604.1| AT3G01150 [Arabidopsis thaliana]
gi|332640095|gb|AEE73616.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 399
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/416 (66%), Positives = 321/416 (77%), Gaps = 29/416 (6%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEA
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVS 354
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 418
+A PP AGW P A G PYM P S P G
Sbjct: 355 GSA-----------PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388
>gi|81076794|gb|ABB55397.1| polypyrimidine tract-binding protein-like [Solanum tuberosum]
Length = 442
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/373 (72%), Positives = 310/373 (83%), Gaps = 7/373 (1%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKVLHLRNLPW+C++EEL+EL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 ADLNQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFV KI TFEK AGFQAL+QFSD TAS+A+ ALDGRSIP+YLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++ C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+A++ Q VG DGKK EPE
Sbjct: 182 EHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVL AS+ENMQYAVT+DVL+ VFSAFG VQKIA+F+KNG QALIQYPDV A AK+A
Sbjct: 242 SNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKLH+SYSRHTDL+++ +D+SRDYT+P + S+L Q V
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVPES-------SLLAMQQASAVH 354
Query: 363 ATANQYNGAQFAP 375
AT ++ Q P
Sbjct: 355 ATPPVWHNPQSGP 367
>gi|334702291|gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]
Length = 467
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/373 (72%), Positives = 310/373 (83%), Gaps = 7/373 (1%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKVLHLRNLPW+C++EEL+EL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQQQFRYTQTPSKVLHLRNLPWDCSDEELVELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 ADLNQAINMVSYYASSSEPAQVRGKTVYIQYSNRNEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFV KI TFEK AGFQAL+QFSD TAS+A+ ALDGRSIP+YLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVQKIATFEKAAGFQALIQFSDVGTASAAREALDGRSIPKYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++ C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+A++ Q VG DGKK EPE
Sbjct: 182 EHVNHCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAMEGVLQPVVGPDGKKKEPE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVL AS+ENMQYAVT+DVL+ VFSAFG VQKIA+F+KNG QALIQYPDV A AK+A
Sbjct: 242 SNVLFASLENMQYAVTVDVLNTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTIAAAAKDA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKLH+SYSRHTDL+++ +D+SRDYT+P + S+L Q V
Sbjct: 302 LEGHCIYDGGYCKLHLSYSRHTDLNVQAYSDKSRDYTVPES-------SLLAMQQASAVH 354
Query: 363 ATANQYNGAQFAP 375
AT ++ Q P
Sbjct: 355 ATPPVWHNPQSGP 367
>gi|3395938|gb|AAC62015.1| polypyrimidine tract-binding protein homolog [Arabidopsis thaliana]
Length = 418
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/357 (72%), Positives = 307/357 (85%), Gaps = 2/357 (0%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEA
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ--PSILGQQP 357
LEGHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP ++ +Q P++ G P
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAP 358
>gi|242079253|ref|XP_002444395.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
gi|241940745|gb|EES13890.1| hypothetical protein SORBIDRAFT_07g021250 [Sorghum bicolor]
Length = 462
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 258/335 (77%), Positives = 295/335 (88%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIP+YLLPE++
Sbjct: 125 TIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHI 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
C +RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNV
Sbjct: 185 SACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGSVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
HCIYDGG+CKLH+SYSRHTDL++K +++RSRDYTL
Sbjct: 305 HCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTL 339
>gi|414881408|tpg|DAA58539.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
Length = 560
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 281/413 (68%), Positives = 316/413 (76%), Gaps = 36/413 (8%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MAS QPQFRYTQPPSKVLHLRNLPW+CT EEL+ELG PFGKVVNTKC VGANRNQAFI
Sbjct: 1 MAS-GGQPQFRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFI 59
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF D NQAIAMISYYASS+EPAQVRGK VYLQYSNRQEIVNNK T + +GNVLLV +EG
Sbjct: 60 EFGDQNQAIAMISYYASSTEPAQVRGKNVYLQYSNRQEIVNNKATGEGSGNVLLVGMEGV 119
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
VSIDVLH+VFSAFGFVHKI TFEK +G+QAL+QFSD ETA+SAK ALDGR IP YL
Sbjct: 120 APDSVSIDVLHVVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYL 179
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
LPE CTLRITYSAH+ L+VK+QSHRSRD+TNPYLP SA D SG DGKK E
Sbjct: 180 LPELDVACTLRITYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDGSGP-----DGKKQE 234
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
ESN+LLASIENMQY VT+DVLH VFSAFG VQKIA+F+KN G QALIQYPD+QTA AK
Sbjct: 235 AESNILLASIENMQYVVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAYAAK 293
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
EALEGH IY+GG+CKLH+++SRHT+L++KVNN+R RDYT + + QPSILG QP+P
Sbjct: 294 EALEGHSIYEGGYCKLHLTFSRHTELNVKVNNERGRDYTKGNATPSSDQPSILGPQPIPS 353
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPG 413
VGA A+PPA S+P + MPPG
Sbjct: 354 VGA-----------------------------AIPPAQGSVPSAATNSVMPPG 377
>gi|357147881|ref|XP_003574527.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 1 [Brachypodium distachyon]
Length = 459
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/437 (64%), Positives = 319/437 (72%), Gaps = 36/437 (8%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S QFRYTQ PSKVLHLRN+PWE TEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL 124
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT E
Sbjct: 63 QNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEDVQPND 122
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLLPE+
Sbjct: 123 VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEH 182
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+ C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ QL++G DGK EPESN
Sbjct: 183 VSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQLTLGPDGKVKEPESN 242
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VLLASIENMQYAV +DVLH VF++FG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALE
Sbjct: 243 VLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALIQYPDISTAAVAKQALE 302
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP----------------------- 341
GHCIYDGG+CKLH+SYSRHTDL++K +++RSRDYT
Sbjct: 303 GHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTASNPSAQVQAAGQAPGLSTAGVAWQ 362
Query: 342 -STPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP---PEQPMM-----HQPTAAGWG 392
+TP + PS G PV V A FA P Q +M H P
Sbjct: 363 NTTPAASFYPSSAGGNPVGQVPAWNPNMQQGAFASASTSYPTQSLMANSGPHYPAVGSSS 422
Query: 393 AVPP----ASQSMPMMG 405
PP A Q MP G
Sbjct: 423 GAPPMLYQAPQQMPQYG 439
>gi|413922344|gb|AFW62276.1| hypothetical protein ZEAMMB73_137441 [Zea mays]
Length = 458
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/422 (66%), Positives = 323/422 (76%), Gaps = 27/422 (6%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+V+HLVFSAFGFVHKI TFEK AGFQ ++D TA AKN+LDGRSIP+YLLPE++
Sbjct: 125 TIEVIHLVFSAFGFVHKIATFEKAAGFQ----YTDAPTALEAKNSLDGRSIPKYLLPEHI 180
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
C +RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNV
Sbjct: 181 SACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKIKEPESNV 240
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 241 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 300
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS----------TPMVNSQPSILGQ 355
HCIYDGG+CKLH+SYSRHTDL++K ++DRSRDYTL P+++S P + Q
Sbjct: 301 HCIYDGGYCKLHLSYSRHTDLNVKAHDDRSRDYTLSDPNAQLQAAAQAPVISS-PGVAWQ 359
Query: 356 QP-----VPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNH-PY 409
P P G+TA Q PP P M P G+ + A + P+M N PY
Sbjct: 360 NPASAPAAPFYGSTAASTPVGQ---PPAWNPNMQAP---GFASASTAYPNPPLMANSTPY 413
Query: 410 MP 411
P
Sbjct: 414 YP 415
>gi|388491010|gb|AFK33571.1| unknown [Lotus japonicus]
Length = 457
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/456 (62%), Positives = 337/456 (73%), Gaps = 21/456 (4%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+ QFRY Q PSKVLH RNLPWECTE+EL++L PFG+V+NTKCNVGAN+NQAF+EF
Sbjct: 2 SASTAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK DV GNVLLVT+EG +A
Sbjct: 62 GDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKAPGDVPGNVLLVTMEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
V+IDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETAS A+NALDGRSIP YLLP
Sbjct: 122 GDVTIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASLARNALDGRSIPSYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
+++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AID + Q VG DGK+ E E
Sbjct: 182 QHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDGALQPVVGPDGKRTESE 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLA+IENMQYAVT++VLH VFSAFG VQKIA+F+KNG QALIQYPDV TA AKEA
Sbjct: 242 SNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTTAAAAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-PSILGQQP--VP 359
LEGHCIYDGG+CKLH++YSRHTDL++K +D+SRDYT+ + +Q P+ P P
Sbjct: 302 LEGHCIYDGGYCKLHLTYSRHTDLNVKAYSDKSRDYTVLDPSLRAAQVPATAWPNPQAAP 361
Query: 360 MVGATA----NQYNGAQFAPPPPEQPMMHQPTAAGWGAVP---PA----------SQSMP 402
M +A Q +G Q + P + Q G P PA + SM
Sbjct: 362 MYPGSAPALQGQVSGGQMSSWDPAHQEVSQSYIPAPGTFPGYSPAATSSNHLVHNASSMG 421
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQ-SGMQHHHG 437
+ N P + P GPG P +G+QH+HG
Sbjct: 422 ITQNVHSQPSVASPPGPGSSPHTQPSSFAGLQHYHG 457
>gi|326511767|dbj|BAJ92028.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 470
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/405 (65%), Positives = 316/405 (78%), Gaps = 38/405 (9%)
Query: 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA 68
QFRYTQ PSKVLHLRNLPWECTE+EL+EL +PFG++VNTK VGANRNQAF+EF D+NQA
Sbjct: 12 QFRYTQTPSKVLHLRNLPWECTEDELVELCRPFGRIVNTKSGVGANRNQAFVEFTDVNQA 71
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSID 128
I+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG A V+ID
Sbjct: 72 ISMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQASDVTID 131
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLP+++ C
Sbjct: 132 VIHLVFSAFGFVHKIATFEKAAGFQALIQYTDPPTASAAREALDGRSIPRYLLPDHVVSC 191
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
LRI++SAH DL++KFQSHRSRDYTNPYLPV SAID++ Q +VG DG+++E E NVLLA
Sbjct: 192 HLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVEAEGNVLLA 251
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
SIENMQYAV++DVLH VFSAFG VQKIA+F+KNGG QALIQYPD TA + KEALEGHCI
Sbjct: 252 SIENMQYAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDASTATIVKEALEGHCI 311
Query: 309 YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQY 368
YDGG+CK+H+SYSRHTDL++K ++D+S+DYT+P
Sbjct: 312 YDGGYCKIHLSYSRHTDLNVKAHSDKSKDYTIPE-------------------------- 345
Query: 369 NGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPG 413
GAQ A P QP PT AGW A+ PY PPG
Sbjct: 346 -GAQQAAP---QPAGVPPTTAGWQGNSQAAG--------PYGPPG 378
>gi|326494672|dbj|BAJ94455.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528325|dbj|BAJ93344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/426 (65%), Positives = 326/426 (76%), Gaps = 17/426 (3%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S QFRYTQ PSKVLHLRN+PWE TEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL 124
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG
Sbjct: 63 QNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPND 122
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLL ++
Sbjct: 123 VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLADH 182
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+ C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ Q +G DG EPESN
Sbjct: 183 VSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGITQPILGSDGMIKEPESN 242
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VLLASIENMQYAV +DVLH VFS+FG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALE
Sbjct: 243 VLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITTAGVAKQALE 302
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT-LPSTPMVNSQPSILGQQPVP--MV 361
GHCIYDGG+CKLH+SYSRHTDL++K +++RSRDYT L + V + P ++ Q P
Sbjct: 303 GHCIYDGGYCKLHLSYSRHTDLNVKAHDERSRDYTVLDPSARVQAPPGVVWQSTTPAGFY 362
Query: 362 GATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP---MMGN-HPYMPP-GSMP 416
G++A + Q P P M + GA AS S P +M N P+ P GS
Sbjct: 363 GSSAGATSVGQV---PTWNPNMQR------GAFASASTSYPTQLLMANPGPHFPVIGSSS 413
Query: 417 MGPGMM 422
P M+
Sbjct: 414 GAPPML 419
>gi|115453245|ref|NP_001050223.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|18921326|gb|AAL82531.1|AC084766_17 putative polypyrimidine tract-binding protein [Oryza sativa
Japonica Group]
gi|108708433|gb|ABF96228.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113548694|dbj|BAF12137.1| Os03g0376900 [Oryza sativa Japonica Group]
gi|215692946|dbj|BAG88366.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218192927|gb|EEC75354.1| hypothetical protein OsI_11790 [Oryza sativa Indica Group]
gi|222625006|gb|EEE59138.1| hypothetical protein OsJ_11035 [Oryza sativa Japonica Group]
Length = 464
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/336 (76%), Positives = 297/336 (88%), Gaps = 1/336 (0%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL PFG++VNTKC VGANRNQAF+EF D+NQAI
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEIVNNK+ + AGNVLLVTIEG A V+IDV
Sbjct: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLPE++ C
Sbjct: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC 192
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQSHRSRDYTNPYLPV SAID + Q +VG DG+K+E E NVLLAS
Sbjct: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAID-TLQPAVGADGRKVEAEGNVLLAS 251
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCIY
Sbjct: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIY 311
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
DGG+CKLH+SYSRHTDL++K ++D+SRDYT+P M
Sbjct: 312 DGGYCKLHLSYSRHTDLNVKAHSDKSRDYTIPQGAM 347
>gi|414867006|tpg|DAA45563.1| TPA: hypothetical protein ZEAMMB73_334584 [Zea mays]
Length = 504
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 244/333 (73%), Positives = 295/333 (88%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG+++NTK VGANRNQAF+EF D+NQAI
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG A V+IDV
Sbjct: 71 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQASDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D +TAS+A+ ALDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDADTASAAREALDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQS+RSRDY NPYLP+ SA+D + Q +VG DG+K+E + NVLLAS
Sbjct: 191 LRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGSDGRKVEAQGNVLLAS 250
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAV++DVLH VFS+FG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCIY
Sbjct: 251 IENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDVNTAAVAKEALEGHCIY 310
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
DGG+CKLH+SYSRHTDL++K + D+SRDYT+P+
Sbjct: 311 DGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIPA 343
>gi|226495275|ref|NP_001151769.1| polypyrimidine tract-binding protein [Zea mays]
gi|195649587|gb|ACG44261.1| polypyrimidine tract-binding protein [Zea mays]
Length = 487
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 242/333 (72%), Positives = 293/333 (87%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG++VNTK VGAN NQAF+EF D+NQAI
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG + V+IDV
Sbjct: 71 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQSSDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D TAS+AK +LDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQS+RSRDY NPYLP+ SA+D + Q +VG DG+++E + NVLLAS
Sbjct: 191 LRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGADGRQVEAQGNVLLAS 250
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFS+FG VQKIA+F+KNGG QALIQYPDV TA VAKE+LEGHCIY
Sbjct: 251 IENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQYPDVSTAAVAKESLEGHCIY 310
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
DGG+CKLH+SYSRHTDL++K + D+SRDYT+P+
Sbjct: 311 DGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIPA 343
>gi|223972751|gb|ACN30563.1| unknown [Zea mays]
gi|223973771|gb|ACN31073.1| unknown [Zea mays]
Length = 487
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 242/333 (72%), Positives = 293/333 (87%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG++VNTK VGAN NQAF+EF D+NQAI
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG + V+IDV
Sbjct: 71 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQSSDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D TAS+AK +LDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQS+RSRDY NPYLP+ SA+D + Q +VG DG+++E + NVLLAS
Sbjct: 191 LRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGADGRQVEAQGNVLLAS 250
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFS+FG VQKIA+F+KNGG QALIQYPDV TA VAKE+LEGHCIY
Sbjct: 251 IENMQYAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQYPDVSTAAVAKESLEGHCIY 310
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
DGG+CKLH+SYSRHTDL++K + D+SRDYT+P+
Sbjct: 311 DGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIPA 343
>gi|255584813|ref|XP_002533124.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223527087|gb|EEF29269.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 483
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 294/487 (60%), Positives = 330/487 (67%), Gaps = 55/487 (11%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S QPQFRYTQ PSKVLHLRNLPWECTEEELIEL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 ADLNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL-- 180
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+QF+D ETASSA+NALDGRSIP+Y
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPKYSFF 181
Query: 181 -----LPENMGPCTLRITYSAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGL 234
L N R T S DL RDYTNPYLPV P+AI+ Q +VG
Sbjct: 182 SLNLHLSLNSALLYSRFTQSKSLDDLQFLICLLNFRDYTNPYLPVNPTAIEGPVQPAVGP 241
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
DGKK EPESNVLLASIENMQYAVT+DV+H VFSAFG VQKIA+F+KNGG QAL+QYPDV
Sbjct: 242 DGKKKEPESNVLLASIENMQYAVTVDVIHTVFSAFGTVQKIAIFEKNGGTQALVQYPDVA 301
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
TA VAKE LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P S+L
Sbjct: 302 TAAVAKETLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDA-------SLLA 354
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQ------SMPMMG-NH 407
VP V + Q +P P+ +AA A PA Q SM G +
Sbjct: 355 AGQVPGVPTAPTMWQNPQASP---MYPVNSYASAAAVTAQVPAGQVPAWNPSMEAGGPAY 411
Query: 408 PYMPPGSMP----------------------------MGPGM--MQMHMPGQSGMQHHHG 437
P +PPG+ P M PG+ M M PG G
Sbjct: 412 PSVPPGTFPGQSYPAPPPTYVSAAMPVGSSPLTQGSPMSPGVGTMPMTHPGVQSNLRPGG 471
Query: 438 AMPPPRP 444
A PP +P
Sbjct: 472 ASPPGQP 478
>gi|125526877|gb|EAY74991.1| hypothetical protein OsI_02889 [Oryza sativa Indica Group]
Length = 583
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 280/453 (61%), Positives = 324/453 (71%), Gaps = 64/453 (14%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
S QPQFRYTQPPSKV+HLRNLPW+CTEEEL+ELG PFGKVVNTKCNVGANRNQAF+EFA
Sbjct: 2 ASGQPQFRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFA 61
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
D NQAIAMISY+ASS+EPAQVRGK VYLQYSNRQEIVN+K++ + AGNVLLV++EG
Sbjct: 62 DQNQAIAMISYFASSAEPAQVRGKNVYLQYSNRQEIVNSKSSGEAAGNVLLVSMEGVLPD 121
Query: 124 LVSIDVLHL----------------------------------VFSAFGFVHKITTFEKT 149
VSIDVLHL VFSAFGFV KI TFEK
Sbjct: 122 AVSIDVLHLAIVTEFHGILAGYCIRNTCYQTCGRVNGEWKVAWVFSAFGFVQKIATFEKA 181
Query: 150 AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRS 209
+G+QAL+QF DTETASSAK ALD ++ +P C LRI YSAHT L+VKFQSHRS
Sbjct: 182 SGYQALIQFCDTETASSAKAALDVIGFQKFDVP-----CLLRINYSAHTVLNVKFQSHRS 236
Query: 210 RDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269
RDYTNPYLPVAPSAID SG DGKK E ESNVLLAS+ENMQY VT+DVLH VFSAF
Sbjct: 237 RDYTNPYLPVAPSAIDGSGP-----DGKKQEAESNVLLASVENMQYVVTIDVLHEVFSAF 291
Query: 270 GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIK 329
G VQKIA+F+KN G QALIQYPD+QTAV AKEALEGH IY+GG+CKLH+++SRHTDL++K
Sbjct: 292 GFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGGYCKLHLTFSRHTDLNVK 351
Query: 330 VNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAA 389
VNN+R RDYT +T ++QPSILG QPV Y+GA + P++A
Sbjct: 352 VNNERGRDYTGGNTAPTSNQPSILGPQPV---------YSGA----------YNNAPSSA 392
Query: 390 GWGAVPPASQ-SMPMMGNHPYMPPGSMPMGPGM 421
VPP + + P +HPY +P P +
Sbjct: 393 TGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAV 425
>gi|225452861|ref|XP_002283752.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 2
[Vitis vinifera]
Length = 420
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 278/455 (61%), Positives = 322/455 (70%), Gaps = 48/455 (10%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S QPQFRYTQ PSKVLHLRNLPWECTEEEL+EL KPFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSGQPQFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A
Sbjct: 62 LDLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
AL+QF+D ETASSA+NALDGRSIPRYLLP
Sbjct: 122 G-----------------------------DALIQFTDAETASSARNALDGRSIPRYLLP 152
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E++G C LRI+YSAHTDL++KFQSHRSRDYTNPYLPV P+AI+ Q ++G DGKK EPE
Sbjct: 153 EHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQPALGPDGKKKEPE 212
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG+QALIQYPDV TA VAKEA
Sbjct: 213 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGMQALIQYPDVTTAAVAKEA 272
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-------PSILGQ 355
LEGHCIYDGG+CKLH+SYSRHTDL++K ++DRSRDYT+P + ++ Q + + Q
Sbjct: 273 LEGHCIYDGGYCKLHLSYSRHTDLNVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQ 332
Query: 356 QPVPMVGATANQYNGAQFAPPPPEQPMMH---QPTAAGWGAVPPASQSMPMMGNHPYMPP 412
P T + A P P M A+ A P + + +P PP
Sbjct: 333 NPQAAPLYTGHDAAAAAAVQVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAYP-APP 391
Query: 413 GSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDHM 447
GS P+ P + PG GA PP RP +
Sbjct: 392 GSSPLTPAVPPNVRPG--------GASPPGRPPYF 418
>gi|242040789|ref|XP_002467789.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
gi|241921643|gb|EER94787.1| hypothetical protein SORBIDRAFT_01g034060 [Sorghum bicolor]
Length = 486
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 244/333 (73%), Positives = 291/333 (87%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRY Q PSKVLHLRNLPWEC EEEL+EL KPFG++VNTK VG NRNQAF+EF D+NQAI
Sbjct: 11 FRYAQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGVNRNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
AM+SY+ASSSEPAQ+RGK VY+QYSNRQEIVNNK+ + AGNVLLVT+EG A V+IDV
Sbjct: 71 AMVSYFASSSEPAQIRGKPVYIQYSNRQEIVNNKSPGETAGNVLLVTMEGVQASDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D TAS+A++ALDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAARDALDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQS+RSRDY NPYLP+ SA+D + Q VG DG+K+E + NVLLAS
Sbjct: 191 LRISFSAHQDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPVVGADGRKVEAQGNVLLAS 250
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFS+FG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCIY
Sbjct: 251 IENMQYAVTVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDVNTAAVAKEALEGHCIY 310
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
DGG+CKLH+SYSRHTDL++K + D+SRDYT+P+
Sbjct: 311 DGGYCKLHLSYSRHTDLNVKAHGDKSRDYTIPA 343
>gi|414870439|tpg|DAA48996.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 314
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/309 (77%), Positives = 271/309 (87%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL++L KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIP+YLLPE++
Sbjct: 125 TIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHI 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
G C +RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNV
Sbjct: 185 GACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEG
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEG 304
Query: 306 HCIYDGGFC 314
HCIYDGG+C
Sbjct: 305 HCIYDGGYC 313
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 240 EPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
+ NVLL + E +Q VT++V+H+VFSAFG V KIA F+K G QALIQY D TA+
Sbjct: 106 DSSGNVLLVTFEGVQPNDVTIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALE 165
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AK +L+G I G C + I++S H DL+IK + RSRDYT P P+ +Q +I
Sbjct: 166 AKNSLDGRSIPKYLLPEHIGACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPV--NQTAI 223
Query: 353 LG 354
G
Sbjct: 224 EG 225
>gi|357147883|ref|XP_003574528.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Brachypodium distachyon]
Length = 313
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 239/310 (77%), Positives = 269/310 (86%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S QFRYTQ PSKVLHLRN+PWE TEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWEATEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL 124
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT E
Sbjct: 63 QNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEDVQPND 122
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLLPE+
Sbjct: 123 VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLPEH 182
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+ C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ QL++G DGK EPESN
Sbjct: 183 VSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGIAQLTLGPDGKVKEPESN 242
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VLLASIENMQYAV +DVLH VF++FG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALE
Sbjct: 243 VLLASIENMQYAVGVDVLHTVFNSFGTVQKIAMFEKNGGMQALIQYPDISTAAVAKQALE 302
Query: 305 GHCIYDGGFC 314
GHCIYDGG+C
Sbjct: 303 GHCIYDGGYC 312
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 7/113 (6%)
Query: 240 EPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
+ NVLL + E++Q V++DV+H+VFSAFG V KIA F+K G QALIQY D TA+
Sbjct: 105 DSSGNVLLVTFEDVQPNDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALE 164
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
AK +L+G I C L I++S H DL+IK + RSRDYT P P+
Sbjct: 165 AKNSLDGRSIPRYLLPEHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPV 217
>gi|357496461|ref|XP_003618519.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355493534|gb|AES74737.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 483
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 270/480 (56%), Positives = 329/480 (68%), Gaps = 54/480 (11%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+S Q QFR TQ PSKVLH RNLPWEC++EEL +L PFGKV++TKCNVG N+NQAF+
Sbjct: 1 MSSSKQQQQFRCTQIPSKVLHFRNLPWECSDEELADLCSPFGKVMSTKCNVGVNQNQAFV 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
+FA+LNQAI+M+SYYASSSEPAQVRGKTVY+QYSNR IVN+ + D+ GNVLLVTIEG
Sbjct: 61 QFAELNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHHIVNSNSPGDIPGNVLLVTIEGV 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
+A VSIDV+HLVFSAFGFVHK+ TFEKTAGFQAL+Q++D ETA+SAK++LDGRSIPRYL
Sbjct: 121 EAGDVSIDVIHLVFSAFGFVHKLATFEKTAGFQALIQYTDAETAASAKDSLDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQL---------- 230
LPE++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AID++ Q+
Sbjct: 181 LPEHVGACNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQAAIDSALQVYCSYFLPLYM 240
Query: 231 ---------------SVGLDGKKLEPESNVLLASIENMQYAVTLDVLH---------MVF 266
++G DGK+ E +SNVLLA+IENMQYAV LDVLH VF
Sbjct: 241 FCIFLNVLTTLDVQPAIGPDGKRKEHKSNVLLATIENMQYAVPLDVLHSVRILFLIKRVF 300
Query: 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
SAFG VQK+AMFDKNG ALIQYPD+ A AKE LEGHCIYDGG+CKLH++YSRHTDL
Sbjct: 301 SAFGFVQKVAMFDKNGHTHALIQYPDLTIAAAAKETLEGHCIYDGGYCKLHLTYSRHTDL 360
Query: 327 SIKVNNDRSRDYTLPSTPMVNSQPSI-LGQQPVPMVGATANQYNGA--QFAPPPPEQPMM 383
++K +D+SRDYT+ PS+ Q P A Y+G+ Q P Q +
Sbjct: 361 NVKAFSDKSRDYTV-------LDPSLHAAQAPAWQTTQAATMYSGSMGQMPSWDPNQQEV 413
Query: 384 HQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQS------GMQHHHG 437
Q + G P + P P P ++P HMP S G Q H+G
Sbjct: 414 TQSYLSAPGTFPSGQAAPPF----PGYSPAAVPPAGASPHSHMPPSSFAGAFPGSQPHYG 469
>gi|357119737|ref|XP_003561590.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Brachypodium distachyon]
Length = 522
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 234/304 (76%), Positives = 270/304 (88%)
Query: 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA 68
QFRYTQ PSKVLHLRNLPWECTEEEL+EL KPFG++VNTK VGANRNQAF+EF D+NQA
Sbjct: 12 QFRYTQTPSKVLHLRNLPWECTEEELVELCKPFGRIVNTKSGVGANRNQAFVEFTDVNQA 71
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSID 128
I+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG A V+ID
Sbjct: 72 ISMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQASDVTID 131
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLPE++ C
Sbjct: 132 VIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTASAAREALDGRSIPRYLLPEHVLSC 191
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
LRI++SAH DL++KFQSHRSRDYTNPYLPV SAID++ Q +VG DG+++E E NVLLA
Sbjct: 192 HLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVEAEGNVLLA 251
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
SIENMQYAV++DVLH VFS FG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCI
Sbjct: 252 SIENMQYAVSVDVLHTVFSTFGTVQKIAIFEKNGGTQALIQYPDVTTATVAKEALEGHCI 311
Query: 309 YDGG 312
YDGG
Sbjct: 312 YDGG 315
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q + VT+DV+H+VFSAFG V KIA F+K G QALIQY D TA
Sbjct: 110 ETAGNVLLVTIEGVQASDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTASA 169
Query: 299 AKEALEGHCIYDGGF------CKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A+EAL+G I C L IS+S H DL+IK + RSRDYT P P VNS S
Sbjct: 170 AREALDGRSIPRYLLPEHVLSCHLRISFSAHKDLNIKFQSHRSRDYTNPYLP-VNS--SA 226
Query: 353 LGQQPVPMVGA 363
+ P VGA
Sbjct: 227 IDSTLQPAVGA 237
>gi|356531750|ref|XP_003534439.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 505
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/356 (69%), Positives = 287/356 (80%), Gaps = 9/356 (2%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+Q QFRYTQ PSKVLHLRNLPWEC+EEEL EL KPFGK++NTKCNVGANRNQAF+EF
Sbjct: 2 STSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 ADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR---- 178
VSIDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETASSA++ALDGRSIPR
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRQVAL 181
Query: 179 -YLLPENMGPCTLRI----TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
P + P + + + T L DYTNP LPV +AI+ + Q +VG
Sbjct: 182 FVFFPYSSTPSIILVIACQVINLLTHLFFGICLMHFLDYTNPMLPVNYTAIEGAVQTAVG 241
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
DGK+ EPESNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+
Sbjct: 242 PDGKRKEPESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDI 301
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
TA A+EALEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q
Sbjct: 302 ITASAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ 357
>gi|108708434|gb|ABF96229.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
Length = 318
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/305 (77%), Positives = 270/305 (88%), Gaps = 1/305 (0%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL PFG++VNTKC VGANRNQAF+EF D+NQAI
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEIVNNK+ + AGNVLLVTIEG A V+IDV
Sbjct: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLPE++ C
Sbjct: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC 192
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQSHRSRDYTNPYLPV SAID + Q +VG DG+K+E E NVLLAS
Sbjct: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAID-TLQPAVGADGRKVEAEGNVLLAS 251
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCIY
Sbjct: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVTTASVAKEALEGHCIY 311
Query: 310 DGGFC 314
DGG+C
Sbjct: 312 DGGYC 316
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 11/131 (8%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q VT+DV+H+VFSAFG V KIA F+K G QALIQY D TA
Sbjct: 110 ETAGNVLLVTIEGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASA 169
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A+EAL+G I C L IS+S H DL+IK + RSRDYT P P+ +S
Sbjct: 170 AREALDGRSIPRYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDT 229
Query: 353 LGQQPVPMVGA 363
L P VGA
Sbjct: 230 LQ----PAVGA 236
>gi|238013298|gb|ACR37684.1| unknown [Zea mays]
gi|414867005|tpg|DAA45562.1| TPA: hypothetical protein ZEAMMB73_334584 [Zea mays]
Length = 317
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 225/305 (73%), Positives = 269/305 (88%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG+++NTK VGANRNQAF+EF D+NQAI
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIINTKSGVGANRNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG A V+IDV
Sbjct: 71 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQASDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D +TAS+A+ ALDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDADTASAAREALDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQS+RSRDY NPYLP+ SA+D + Q +VG DG+K+E + NVLLAS
Sbjct: 191 LRISFSAHKDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGSDGRKVEAQGNVLLAS 250
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAV++DVLH VFS+FG VQKIA+F+KNGG QALIQYPDV TA VAKEALEGHCIY
Sbjct: 251 IENMQYAVSVDVLHTVFSSFGTVQKIAIFEKNGGTQALIQYPDVNTAAVAKEALEGHCIY 310
Query: 310 DGGFC 314
DGG+C
Sbjct: 311 DGGYC 315
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 72/113 (63%), Gaps = 7/113 (6%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q + VT+DV+HMVFSAFG V KIA F+K G QALIQY D TA
Sbjct: 108 ETAGNVLLVTIEGVQASDVTIDVIHMVFSAFGYVHKIATFEKAAGFQALIQYTDADTASA 167
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
A+EAL+G I C L IS+S H DL+IK ++RSRDY P P+
Sbjct: 168 AREALDGRSIPSYLLPEHVTSCCLRISFSAHKDLNIKFQSNRSRDYNNPYLPI 220
>gi|326506386|dbj|BAJ86511.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 313
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/310 (76%), Positives = 265/310 (85%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S QFRYTQ PSKVLHLRN+PWE TEEEL+EL KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 3 SGSTQFRYTQTPSKVLHLRNMPWESTEEELVELCKPFGRVVNTMCNVGANRNQAFVEFAD 62
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL 124
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG
Sbjct: 63 QNQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPND 122
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VSIDV+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIPRYLL ++
Sbjct: 123 VSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPRYLLADH 182
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+ C LRIT+SAH DL++KFQSHRSRDYTNPYLPV P+AI+ Q +G DG EPESN
Sbjct: 183 VSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPVNPTAIEGITQPILGSDGMIKEPESN 242
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VLLASIENMQYAV +DVLH VFS+FG VQKIAMF+KNGG+QALIQYPD+ A VAK+ALE
Sbjct: 243 VLLASIENMQYAVGVDVLHTVFSSFGAVQKIAMFEKNGGMQALIQYPDITPAGVAKQALE 302
Query: 305 GHCIYDGGFC 314
GHCIYDGG+C
Sbjct: 303 GHCIYDGGYC 312
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 240 EPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
+ NVLL + E +Q V++DV+H+VFSAFG V KIA F+K G QALIQY D TA+
Sbjct: 105 DSSGNVLLVTFEGVQPNDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALE 164
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
AK +L+G I C L I++S H DL+IK + RSRDYT P P+
Sbjct: 165 AKNSLDGRSIPRYLLADHVSICHLRITFSAHKDLNIKFQSHRSRDYTNPYLPV 217
>gi|356531752|ref|XP_003534440.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 467
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/347 (68%), Positives = 279/347 (80%), Gaps = 29/347 (8%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+Q QFRYTQ PSKVLHLRNLPWEC+EEEL EL KPFGK++NTKCNVGANRNQAF+EF
Sbjct: 2 STSNQHQFRYTQTPSKVLHLRNLPWECSEEELRELCKPFGKIINTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 ADLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
AL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 G-----------------------------DALIQFTDAETASSARDALDGRSIPRYLLP 152
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AI+ + Q +VG DGK+ EPE
Sbjct: 153 AHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPE 212
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+ TA A+EA
Sbjct: 213 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 272
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q
Sbjct: 273 LEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQ 319
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 72/118 (61%), Gaps = 11/118 (9%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL +IE V++DVLH VFSAFG V KI FEK QAL+Q+ D TAS+A+ A
Sbjct: 214 NVLLASIENMQ-YAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 272
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG 228
L+G I + G C L ++YS HTDL+VK S +SRDYT P PS + A G
Sbjct: 273 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVP----DPSLLAAQG 320
>gi|356568678|ref|XP_003552537.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 2 [Glycine max]
Length = 467
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/370 (65%), Positives = 288/370 (77%), Gaps = 32/370 (8%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S SSQ QFRYTQ PSKVLHLRNLPWEC+EEEL EL +PFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 VDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
AL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 G-----------------------------DALIQFTDAETASSARDALDGRSIPRYLLP 152
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AI+ + Q +VG DGK+ EP+
Sbjct: 153 AHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPD 212
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+ TA A+EA
Sbjct: 213 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIITASAAREA 272
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-PSILGQQP--VP 359
LEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P ++ +Q P+ Q P P
Sbjct: 273 LEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPDPSLLAAQGPATAWQNPQAAP 332
Query: 360 MVGATANQYN 369
M +A Y+
Sbjct: 333 MYPGSAPAYH 342
>gi|186509647|ref|NP_001118547.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
gi|332640096|gb|AEE73617.1| polypyrimidine tract-binding protein 1 [Arabidopsis thaliana]
Length = 370
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/416 (60%), Positives = 295/416 (70%), Gaps = 58/416 (13%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
+ALVQF+D ETAS+A++ALDGRSIPRYLL
Sbjct: 122 H-----------------------------EALVQFTDVETASAARSALDGRSIPRYLLS 152
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +
Sbjct: 153 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 212
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEA
Sbjct: 213 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 272
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V
Sbjct: 273 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVS 325
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 418
+A PP AGW P A G PYM P S P G
Sbjct: 326 GSA-----------PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 359
>gi|356568680|ref|XP_003552538.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
isoform 3 [Glycine max]
Length = 304
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 227/291 (78%), Positives = 258/291 (88%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S SSQ QFRYTQ PSKVLHLRNLPWEC+EEEL EL +PFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 VDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RSRDYTNP LPV +AI+ + Q +VG DGK+ EP+
Sbjct: 182 AHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPD 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYP +
Sbjct: 242 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPGI 292
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 7/109 (6%)
Query: 244 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
NVLL +IE ++ V++DV+H+VFSAFG V KIA F+K G QALIQ+ D +TA A++A
Sbjct: 110 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDA 169
Query: 303 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
L+G I G C L ISYS H DL+IK ++RSRDYT P P+
Sbjct: 170 LDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSRDYTNPMLPV 218
>gi|255636160|gb|ACU18422.1| unknown [Glycine max]
Length = 304
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/291 (77%), Positives = 257/291 (88%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S SSQ QFRYTQ PSKVLHLRNLPWEC+EEEL EL +PFGK+VNTKCNVGANRNQAF+EF
Sbjct: 2 STSSQHQFRYTQTPSKVLHLRNLPWECSEEELRELCRPFGKIVNTKCNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
DLNQAI+M+SYYASSSEPA VRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIEG +A
Sbjct: 62 VDLNQAISMVSYYASSSEPAMVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEA 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEKTAGFQAL+QF+D ETASSA++ALDGRSIPRYLLP
Sbjct: 122 GDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDALDGRSIPRYLLP 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C LRI+YSAH DL++KFQS+RS DYTNP LPV +AI+ + Q +VG DGK+ EP+
Sbjct: 182 AHVGSCNLRISYSAHKDLNIKFQSNRSGDYTNPMLPVNYTAIEGAVQTAVGPDGKRKEPD 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
SNVLLASIENMQYAVT+DVLH VFSAFG VQKIA+F+KNG QALIQYP +
Sbjct: 242 SNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPGI 292
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 244 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
NVLL +IE ++ V++DV+H+VFSAFG V KIA F+K G QALIQ+ D +TA A++A
Sbjct: 110 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDAETASSARDA 169
Query: 303 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
L+G I G C L ISYS H DL+IK ++RS DYT P P+
Sbjct: 170 LDGRSIPRYLLPAHVGSCNLRISYSAHKDLNIKFQSNRSGDYTNPMLPV 218
>gi|219363125|ref|NP_001137030.1| uncharacterized protein LOC100217199 [Zea mays]
gi|194698066|gb|ACF83117.1| unknown [Zea mays]
gi|414870440|tpg|DAA48997.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 296
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/287 (77%), Positives = 251/287 (87%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL++L KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+V+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIP+YLLPE++
Sbjct: 125 TIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHI 184
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245
G C +RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNV
Sbjct: 185 GACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNV 244
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
LLASIENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYP+
Sbjct: 245 LLASIENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPE 291
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 9/118 (7%)
Query: 244 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
NVLL + E +Q VT++V+H+VFSAFG V KIA F+K G QALIQY D TA+ AK +
Sbjct: 110 NVLLVTFEGVQPNDVTIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNS 169
Query: 303 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
L+G I G C + I++S H DL+IK + RSRDYT P P+ +Q +I G
Sbjct: 170 LDGRSIPKYLLPEHIGACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPV--NQTAIEG 225
>gi|108708435|gb|ABF96230.1| Polypyrimidine tract-binding protein, putative, expressed [Oryza
sativa Japonica Group]
Length = 300
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/284 (76%), Positives = 251/284 (88%), Gaps = 1/284 (0%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL PFG++VNTKC VGANRNQAF+EF D+NQAI
Sbjct: 13 FRYTQTPSKVLHLRNLPWECAEEELVELCNPFGRIVNTKCGVGANRNQAFVEFTDINQAI 72
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEIVNNK+ + AGNVLLVTIEG A V+IDV
Sbjct: 73 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIVNNKSPGETAGNVLLVTIEGVQANDVTIDV 132
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+HLVFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLPE++ C
Sbjct: 133 IHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPRYLLPEHVTSCC 192
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LRI++SAH DL++KFQSHRSRDYTNPYLPV SAID + Q +VG DG+K+E E NVLLAS
Sbjct: 193 LRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAID-TLQPAVGADGRKVEAEGNVLLAS 251
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
IENMQYAVT+DVLH VFSAFG VQKIA+F+KNGG QALIQYP++
Sbjct: 252 IENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPEI 295
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 11/131 (8%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q VT+DV+H+VFSAFG V KIA F+K G QALIQY D TA
Sbjct: 110 ETAGNVLLVTIEGVQANDVTIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASA 169
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A+EAL+G I C L IS+S H DL+IK + RSRDYT P P+ +S
Sbjct: 170 AREALDGRSIPRYLLPEHVTSCCLRISFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDT 229
Query: 353 LGQQPVPMVGA 363
L P VGA
Sbjct: 230 LQ----PAVGA 236
>gi|356541547|ref|XP_003539236.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like
[Glycine max]
Length = 447
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/347 (59%), Positives = 265/347 (76%), Gaps = 17/347 (4%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
VS+Q + ++T PSKV+H RNLP +C+EEELI+L PFGKVVN VG NRNQ F+EF
Sbjct: 11 VSAQTEKQFT-VPSKVVHFRNLPKQCSEEELIKLCSPFGKVVNIMSGVGPNRNQGFVEFE 69
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
D+N+A +++SYY SS+ P Q+RGKT+Y+QYS R E+V NK T GN+L+VT+EG A
Sbjct: 70 DINEANSIVSYYLSSN-PVQLRGKTIYVQYSERPELVINKYTK---GNILIVTMEGIQAG 125
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V IDV+HLVFS FGFV KI+TFEK A FQA+VQF D +TASSAK+ALDG+SIPRYLLP
Sbjct: 126 DVGIDVIHLVFSEFGFVQKISTFEKNACFQAMVQFPDVKTASSAKDALDGKSIPRYLLPN 185
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP-E 242
+ C LRITYSAH DL++KFQS+R+RDYTNP LPV ++ID + ++P E
Sbjct: 186 YVCDCNLRITYSAHQDLTIKFQSNRTRDYTNPTLPVNQTSID-----------RAIQPFE 234
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VL AS ENMQY VT+DVLH VFS +G VQKI++F+KNG ALIQYPD+ TA AK+A
Sbjct: 235 NHVLWASFENMQYDVTVDVLHSVFSEYGTVQKISIFEKNGQTHALIQYPDIATATAAKKA 294
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
L GHCIYDGG CKL +SYS HTD+++K ++D+SRDYT+P+ + Q
Sbjct: 295 LMGHCIYDGGCCKLRLSYSHHTDINVKGSSDKSRDYTMPNHGVFEEQ 341
>gi|145334809|ref|NP_001078750.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
gi|110737620|dbj|BAF00751.1| polypyrimidine tract-binding RNA transport protein-like
[Arabidopsis thaliana]
gi|332008936|gb|AED96319.1| polypyrimidine tract-binding protein 2 [Arabidopsis thaliana]
Length = 329
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/207 (88%), Positives = 200/207 (96%)
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+I
Sbjct: 33 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 92
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIEN
Sbjct: 93 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 152
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
MQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALEGHCIYDGG
Sbjct: 153 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 212
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYT 339
FCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 213 FCKLHITYSRHTDLSIKVNNDRSRDYT 239
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL +IE V++DVLH+VF+AFG V KI F+K G QAL+Q+SD +TA AK A
Sbjct: 144 NVLLASIENMQ-YAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEA 202
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G I + G C L ITYS HTDLS+K + RSRDYT
Sbjct: 203 LEGHCI------YDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 239
>gi|384245764|gb|EIE19256.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 443
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/345 (60%), Positives = 257/345 (74%), Gaps = 6/345 (1%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
+S QP R++QPPSKVLH+RNLP+E TEEEL EL FG +V TK NVG N+NQAF+EF
Sbjct: 1 MSEQPVHRFSQPPSKVLHIRNLPYETTEEELRELCSNFGPIVQTKLNVGTNKNQAFVEFP 60
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
D+N AI M+SY+A++++PA+VRGKTVYLQYS RQEIVN+ +A+ GNVLLV++E
Sbjct: 61 DMNMAIQMVSYFANAADPAKVRGKTVYLQYSTRQEIVNSTRSAEQGGNVLLVSLENLAPD 120
Query: 124 L-VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
+ V++D LHLVFSAFG V KI TFEK GFQALVQ++D ETA + ALDGR IP++LL
Sbjct: 121 MNVTLDTLHLVFSAFGLVQKIATFEKGQGFQALVQYADAETAEQVRLALDGRHIPKHLLN 180
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG--LDGKKLE 240
+ P +L+ITYS HTDL+VKFQSHRSRDYTN YLP AP+ D + L + + G L
Sbjct: 181 DTPNPPSLKITYSQHTDLNVKFQSHRSRDYTNLYLPAAPAGGDPNLALGIQAPISGNPL- 239
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
E NVLL IEN Y V +D L+ VFS +G VQKIA+FDKNG QALIQYPD +A AK
Sbjct: 240 -EGNVLLCQIENQAYPVNVDALNTVFSPYGFVQKIAIFDKNGQSQALIQYPDPLSATNAK 298
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL-PSTP 344
ALEGH IYDGG+ +L ISYS H +L++K NNDRS DYTL P P
Sbjct: 299 SALEGHAIYDGGYNRLKISYSVHRNLNVKANNDRSCDYTLQPGAP 343
>gi|414870437|tpg|DAA48994.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 227
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/222 (75%), Positives = 192/222 (86%)
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVL 130
M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V+I+V+
Sbjct: 1 MVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDVTIEVI 60
Query: 131 HLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
HLVFSAFGFVHKI TFEK AGFQAL+Q++D TA AKN+LDGRSIP+YLLPE++G C +
Sbjct: 61 HLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNSLDGRSIPKYLLPEHIGACHM 120
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 250
RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNVLLASI
Sbjct: 121 RITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNVLLASI 180
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
ENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYP+
Sbjct: 181 ENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPE 222
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 9/118 (7%)
Query: 244 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
NVLL + E +Q VT++V+H+VFSAFG V KIA F+K G QALIQY D TA+ AK +
Sbjct: 41 NVLLVTFEGVQPNDVTIEVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAPTALEAKNS 100
Query: 303 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
L+G I G C + I++S H DL+IK + RSRDYT P P+ +Q +I G
Sbjct: 101 LDGRSIPKYLLPEHIGACHMRITFSAHKDLNIKFQSHRSRDYTNPYLPV--NQTAIEG 156
>gi|115438631|ref|NP_001043595.1| Os01g0619000 [Oryza sativa Japonica Group]
gi|54290863|dbj|BAD61524.1| polypyrimidine tract-binding protein-like [Oryza sativa Japonica
Group]
gi|113533126|dbj|BAF05509.1| Os01g0619000 [Oryza sativa Japonica Group]
gi|215697045|dbj|BAG91039.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 448
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/290 (63%), Positives = 213/290 (73%), Gaps = 25/290 (8%)
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFSAFGFV KI TFEK +G+QAL+QF DTETASSAK ALDGR IP YLLPE PCTLRI
Sbjct: 25 VFSAFGFVQKIATFEKASGYQALIQFCDTETASSAKAALDGRCIPSYLLPELDVPCTLRI 84
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
YSAHT L+VKFQSHRSRDYTNPYLPVAPSAID SG DGKK E ESNVLLAS+EN
Sbjct: 85 NYSAHTVLNVKFQSHRSRDYTNPYLPVAPSAIDGSGP-----DGKKQEAESNVLLASVEN 139
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
MQY VT+DVLH VFSAFG VQKIA+F+KN G QALIQYPD+QTAV AKEALEGH IY+GG
Sbjct: 140 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVAAKEALEGHSIYEGG 199
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 372
+CKLH+++SRHTDL++KVNN+R RDYT +T ++QPSILG QPV + YN A
Sbjct: 200 YCKLHLTFSRHTDLNVKVNNERGRDYTGGNTAPTSNQPSILGPQPV-----YSGAYNNA- 253
Query: 373 FAPPPPEQPMMHQPTAAGWGAVPPASQ-SMPMMGNHPYMPPGSMPMGPGM 421
P++A VPP + + P +HPY +P P +
Sbjct: 254 -------------PSSATGAVVPPGTTLTPPGAPSHPYTSSEPLPQTPAV 290
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 71/108 (65%), Gaps = 7/108 (6%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
+ NVLL ++E +V+IDVLH VFSAFGFV KI FEK +GFQAL+Q+ D +TA +
Sbjct: 127 EAESNVLLASVENMQ-YVVTIDVLHEVFSAFGFVQKIAIFEKNSGFQALIQYPDIQTAVA 185
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
AK AL+G SI G C L +T+S HTDL+VK + R RDYT
Sbjct: 186 AKEALEGHSI------YEGGYCKLHLTFSRHTDLNVKVNNERGRDYTG 227
>gi|359497338|ref|XP_003635487.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein homolog 2-like, partial [Vitis vinifera]
Length = 273
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 167/201 (83%), Positives = 179/201 (89%), Gaps = 1/201 (0%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVSS PQFRYTQPPSKV HLRNLPWECT EELIE+GKPFGK+VNTKCNVGANRNQ FI
Sbjct: 1 MASVSSXPQFRYTQPPSKVFHLRNLPWECTGEELIEMGKPFGKIVNTKCNVGANRNQIFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EFA LNQ IAM SYYASSS+P QV+GKTVYLQYSN IV NKT+ADVAGNVLLVTIEG
Sbjct: 61 EFAGLNQTIAMRSYYASSSKPTQVQGKTVYLQYSNWXGIVKNKTSADVAGNVLLVTIEGA 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA-KNALDGRSIPRY 179
DA LV+I+VLHLVFSAFGFVHKIT FEKT FQALVQFSD+ETAS+A KNA DGRSIPRY
Sbjct: 121 DAHLVNINVLHLVFSAFGFVHKITIFEKTVRFQALVQFSDSETASTAKKNAFDGRSIPRY 180
Query: 180 LLPENMGPCTLRITYSAHTDL 200
LLPE++ PCTLRIT+SAH L
Sbjct: 181 LLPEHLRPCTLRITFSAHIYL 201
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 244 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE- 301
NVLL +IE + V ++VLH+VFSAFG V KI +F+K QAL+Q+ D +TA AK+
Sbjct: 111 NVLLVTIEGADAHLVNINVLHLVFSAFGFVHKITIFEKTVRFQALVQFSDSETASTAKKN 170
Query: 302 ALEGHCIYDGGF------CKLHISYSRHTDL 326
A +G I C L I++S H L
Sbjct: 171 AFDGRSIPRYLLPEHLRPCTLRITFSAHIYL 201
>gi|326502954|dbj|BAJ99105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 343
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/281 (60%), Positives = 204/281 (72%), Gaps = 38/281 (13%)
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFSAFGFVHKI TFEK AGFQAL+Q++D TAS+A+ ALDGRSIPRYLLP+++ C LRI
Sbjct: 9 VFSAFGFVHKIATFEKAAGFQALIQYTDPPTASAAREALDGRSIPRYLLPDHVVSCHLRI 68
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
++SAH DL++KFQSHRSRDYTNPYLPV SAID++ Q +VG DG+++E E NVLLASIEN
Sbjct: 69 SFSAHKDLNIKFQSHRSRDYTNPYLPVNSSAIDSTLQPAVGADGRRVEAEGNVLLASIEN 128
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
MQYAV++DVLH VFSAFG VQKIA+F+KNGG QALIQYPD TA +AKEALEGHCIYDGG
Sbjct: 129 MQYAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDASTATIAKEALEGHCIYDGG 188
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 372
+CK+H+SYSRHTDL++K ++D+S+DYT P GAQ
Sbjct: 189 YCKIHLSYSRHTDLNVKAHSDKSKDYTTP---------------------------EGAQ 221
Query: 373 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPG 413
A P QP PT AGW A+ PY PPG
Sbjct: 222 QAAP---QPAGVPPTTAGWQGNSQAAG--------PYGPPG 251
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 7/109 (6%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
+ GNVLL +IE VS+DVLH VFSAFG V KI FEK G QAL+Q+ D TA+
Sbjct: 116 EAEGNVLLASIENMQ-YAVSVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDASTATI 174
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
AK AL+G I + G C + ++YS HTDL+VK S +S+DYT P
Sbjct: 175 AKEALEGHCI------YDGGYCKIHLSYSRHTDLNVKAHSDKSKDYTTP 217
>gi|164519910|gb|ABY59992.1| polypyrimidine tract-binding protein-like protein [Robinia
pseudoacacia]
Length = 240
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 173/237 (72%), Positives = 192/237 (81%), Gaps = 9/237 (3%)
Query: 209 SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268
SRDYTNPYLPVA SA++ SGQ+ VGLDGK+LE ESNVLLASIENMQYAVTLDVLHMVFSA
Sbjct: 2 SRDYTNPYLPVAQSAVEGSGQVMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSA 61
Query: 269 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
FGPVQKIAMFDKNGGLQALIQYPD+QTAVVAKEALEGHCIYDGGFCK HISYSRHTDLSI
Sbjct: 62 FGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKPHISYSRHTDLSI 121
Query: 329 KVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTA 388
KVNNDRSRDYT+P+TP+VN+QPSI GQ VPM+G A QYNG+Q+ P E +M Q A
Sbjct: 122 KVNNDRSRDYTIPNTPVVNAQPSISGQHAVPMMGPPAQQYNGSQYT-PISEAALMPQSQA 180
Query: 389 AGWGA-VPPASQSM-PMMGNHPYMPPGSMP--MGPGMMQMHMPGQSGMQHHHGAMPP 441
GWG +P +QSM P M N+ YMPPG++P M PG M P S M H +PP
Sbjct: 181 GGWGTPLPAVAQSMPPQMHNNMYMPPGTLPQQMAPG---MQFPSHS-MPQHASTLPP 233
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 78/130 (60%), Gaps = 7/130 (5%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
+ NVLL +IE V++DVLH+VFSAFG V KI F+K G QAL+Q+ D +TA
Sbjct: 33 ETESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVV 91
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
AK AL+G I + G C I+YS HTDLS+K + RSRDYT P PV +
Sbjct: 92 AKEALEGHCI------YDGGFCKPHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNAQPSI 145
Query: 227 SGQLSVGLDG 236
SGQ +V + G
Sbjct: 146 SGQHAVPMMG 155
>gi|357501941|ref|XP_003621259.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496274|gb|AES77477.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 780
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/235 (67%), Positives = 188/235 (80%), Gaps = 22/235 (9%)
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
+VFSAFGFVHKI TFEKTAGFQAL+QF+D ETA+SA++ALDGRSIPRYLLPE++G C LR
Sbjct: 398 VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLR 457
Query: 192 ITYSAHTDLSVKFQSHRSR----------------------DYTNPYLPVAPSAIDASGQ 229
I+YSAH DL++KFQS+RS DYTNP LPV SAI+ + Q
Sbjct: 458 ISYSAHRDLNIKFQSNRSSLSICPGDDQVLLFYRLGVTEAWDYTNPMLPVNHSAIEGAAQ 517
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
++G DGK++E ESNVLLASIENMQYAVT+DV++ VFSAFG VQKIAMF+KNG QALIQ
Sbjct: 518 PAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQ 577
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
YPDV TA A+EALEGHCIYDGG+CKLH+SYSRHTDL++K +D+SRDYT+P P
Sbjct: 578 YPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVP 632
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE 118
I D NQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIE
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIE 233
Query: 119 GTDARLVSIDVLHLV-------FSAFGFVHKITTFEKTAGF 152
G +A VSIDV+HL+ FS F + F T F
Sbjct: 234 GVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF 274
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 54/60 (90%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+ QFRYTQ PSKVLHLRNLPWEC+EEEL+EL PFG++VNTKCNVGANRNQAF+EF
Sbjct: 4 SSSNNHQFRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEF 63
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 7/112 (6%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
+ NVLL +IE V++DV++ VFSAFG V KI FEK QAL+Q+ D TA++
Sbjct: 528 ETESNVLLASIENMQY-AVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAA 586
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
A+ AL+G I + G C L ++YS HTDL+VK S +SRDYT P +P
Sbjct: 587 AREALEGHCI------YDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTVPLVP 632
>gi|413955317|gb|AFW87966.1| hypothetical protein ZEAMMB73_428640 [Zea mays]
Length = 229
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 144/197 (73%), Positives = 173/197 (87%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
FRYTQ PSKVLHLRNLPWEC EEEL+EL KPFG++VNTK VGAN NQAF+EF D+NQAI
Sbjct: 11 FRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANHNQAFVEFTDVNQAI 70
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129
+M+SY+ASSSEPAQ+RGKTVY+QYSNRQEI+NNK+ + AGNVLLVTIEG + V+IDV
Sbjct: 71 SMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIEGVQSSDVTIDV 130
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+H+VFSAFG+VHKI TFEK AGFQAL+Q++D TAS+AK +LDGRSIP YLLPE++ C
Sbjct: 131 IHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAKESLDGRSIPSYLLPEHVTSCC 190
Query: 190 LRITYSAHTDLSVKFQS 206
LRI++SAH DL++KFQS
Sbjct: 191 LRISFSAHKDLNIKFQS 207
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q + VT+DV+HMVFSAFG V KIA F+K G QALIQY D TA
Sbjct: 108 ETAGNVLLVTIEGVQSSDVTIDVIHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASA 167
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIK 329
AKE+L+G I C L IS+S H DL+IK
Sbjct: 168 AKESLDGRSIPSYLLPEHVTSCCLRISFSAHKDLNIK 204
>gi|357501943|ref|XP_003621260.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496275|gb|AES77478.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 618
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 178/221 (80%), Gaps = 22/221 (9%)
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
+VFSAFGFVHKI TFEKTAGFQAL+QF+D ETA+SA++ALDGRSIPRYLLPE++G C LR
Sbjct: 398 VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLR 457
Query: 192 ITYSAHTDLSVKFQSHRSR----------------------DYTNPYLPVAPSAIDASGQ 229
I+YSAH DL++KFQS+RS DYTNP LPV SAI+ + Q
Sbjct: 458 ISYSAHRDLNIKFQSNRSSLSICPGDDQVLLFYRLGVTEAWDYTNPMLPVNHSAIEGAAQ 517
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
++G DGK++E ESNVLLASIENMQYAVT+DV++ VFSAFG VQKIAMF+KNG QALIQ
Sbjct: 518 PAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQ 577
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKV 330
YPDV TA A+EALEGHCIYDGG+CKLH+SYSRHTDL++KV
Sbjct: 578 YPDVTTAAAAREALEGHCIYDGGYCKLHLSYSRHTDLNVKV 618
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE 118
I D NQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIE
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIE 233
Query: 119 GTDARLVSIDVLHLV-------FSAFGFVHKITTFEKTAGF 152
G +A VSIDV+HL+ FS F + F T F
Sbjct: 234 GVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF 274
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+ QFRYTQ PSKVLHLRNLPWEC+EEEL+EL PFG++VNTKCNVGANRNQAF+EF
Sbjct: 4 SSSNNHQFRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEF 63
Query: 63 A 63
Sbjct: 64 V 64
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
+ NVLL +IE V++DV++ VFSAFG V KI FEK QAL+Q+ D TA++
Sbjct: 528 ETESNVLLASIENMQY-AVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQYPDVTTAAA 586
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK 203
A+ AL+G I + G C L ++YS HTDL+VK
Sbjct: 587 AREALEGHCI------YDGGYCKLHLSYSRHTDLNVK 617
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI------YDGGFCKLH 317
+VFSAFG V KIA F+K G QALIQ+ D +TA A++AL+G I G C L
Sbjct: 398 VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLR 457
Query: 318 ISYSRHTDLSIKVNNDRS 335
ISYS H DL+IK ++RS
Sbjct: 458 ISYSAHRDLNIKFQSNRS 475
>gi|20260638|gb|AAM13217.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
gi|24899823|gb|AAN65126.1| putative polypyrimidine tract-binding protein [Arabidopsis
thaliana]
Length = 189
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/186 (73%), Positives = 162/186 (87%)
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
++ VFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL ++G C
Sbjct: 3 IIGQVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSC 62
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL
Sbjct: 63 SLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLG 122
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHCI
Sbjct: 123 LIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCI 182
Query: 309 YDGGFC 314
YDGG+C
Sbjct: 183 YDGGYC 188
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI------YDGGFC 314
++ VFSAFG V KIA F+K G QAL+Q+ DV+TA A+ AL+G I G C
Sbjct: 3 IIGQVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSC 62
Query: 315 KLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 63 SLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 93
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL IE V++DVLH VFSA+G V KI FEK QAL+Q+SD TA+ AK A
Sbjct: 118 NVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 176
Query: 171 LDGRSI 176
L+G I
Sbjct: 177 LEGHCI 182
>gi|165940573|gb|ABY75231.1| polypyrimidine tract-binding protein-like protein [Salvia
officinalis]
Length = 181
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 158/181 (87%)
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
ASSSEPAQ+RGKTVY+QYSNR EIVNNK+ DV GNVLLVTIEG +A VSIDV+HLVFS
Sbjct: 1 ASSSEPAQIRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFS 60
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
AFGFVHKI TFEK AGFQAL+Q+SD +TAS+A+++LDGRSIPRYLLP ++ C LRI+YS
Sbjct: 61 AFGFVHKIATFEKAAGFQALIQYSDVQTASTARDSLDGRSIPRYLLPSHVSECYLRISYS 120
Query: 196 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQY 255
AHTDL++KFQSHRSRDYTNP+LPV P+A+D Q VG DGKK E ESNVLLASIENMQY
Sbjct: 121 AHTDLNIKFQSHRSRDYTNPHLPVNPTAMDGLLQPVVGPDGKKKEFESNVLLASIENMQY 180
Query: 256 A 256
A
Sbjct: 181 A 181
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 10/126 (7%)
Query: 244 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
NVLL +IE ++ V++DV+H+VFSAFG V KIA F+K G QALIQY DVQTA A+++
Sbjct: 36 NVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYSDVQTASTARDS 95
Query: 303 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 356
L+G I C L ISYS HTDL+IK + RSRDYT P P+ P+ +
Sbjct: 96 LDGRSIPRYLLPSHVSECYLRISYSAHTDLNIKFQSHRSRDYTNPHLPV---NPTAMDGL 152
Query: 357 PVPMVG 362
P+VG
Sbjct: 153 LQPVVG 158
>gi|207174028|gb|ACI23510.1| putative polypyrimidine tract-binding protein 2 [Triticum
monococcum]
gi|207174032|gb|ACI23512.1| putative polypyrimidine tract-binding protein 2 [Triticum urartu]
Length = 200
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 132/193 (68%), Positives = 158/193 (81%), Gaps = 5/193 (2%)
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKK 238
YLLPE G CTLRI YSAH+ L+VKFQSHRSRDYTNPYLP+APSAID SG +DGKK
Sbjct: 1 YLLPELDGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLPLAPSAIDGSG-----VDGKK 55
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
EPESNVLLAS+ENMQY VT+D LH VFSAFG VQKIA+F+KN G ALIQYPD+QTAV
Sbjct: 56 EEPESNVLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQTAVK 115
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
A+EALEGH IY+GG+CKLH+++SRHTDL++++NN+R RDYT ++ N +PSILG QP+
Sbjct: 116 AREALEGHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPM 175
Query: 359 PMVGATANQYNGA 371
G+TA Y+ A
Sbjct: 176 LAAGSTAPPYSSA 188
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL ++E +V+ID LH VFSAFGFV KI FEK +GF AL+Q+ D +TA A+ A
Sbjct: 61 NVLLASVENMQ-YIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQTAVKAREA 119
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G SI G C L + +S HTDL+V+ + R RDYT
Sbjct: 120 LEGHSI------YEGGYCKLHLAFSRHTDLNVRINNERGRDYT 156
>gi|207174030|gb|ACI23511.1| putative polypyrimidine tract-binding protein 2 [Aegilops
speltoides]
Length = 200
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 131/193 (67%), Positives = 157/193 (81%), Gaps = 5/193 (2%)
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKK 238
YLLPE G CTLRI YSAH+ L+VKFQSHRSRDYTNPYLP+APSAID SG +DGKK
Sbjct: 1 YLLPELDGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLPLAPSAIDGSG-----VDGKK 55
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E ESNVLLAS+ENMQY VT+D LH VFSAFG VQKIA+F+KN G ALIQYPD+QTAV
Sbjct: 56 EEAESNVLLASVENMQYIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQTAVK 115
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
A+EALEGH IY+GG+CKLH+++SRHTDL++++NN+R RDYT ++ N +PSILG QP+
Sbjct: 116 AREALEGHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPI 175
Query: 359 PMVGATANQYNGA 371
G+TA Y+ A
Sbjct: 176 LAAGSTAPPYSSA 188
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL ++E +V+ID LH VFSAFGFV KI FEK +GF AL+Q+ D +TA A+ A
Sbjct: 61 NVLLASVENMQ-YIVTIDALHEVFSAFGFVQKIAIFEKNSGFHALIQYPDIQTAVKAREA 119
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G SI G C L + +S HTDL+V+ + R RDYT
Sbjct: 120 LEGHSI------YEGGYCKLHLAFSRHTDLNVRINNERGRDYT 156
>gi|207174026|gb|ACI23509.1| putative polypyrimidine tract-binding protein 2 [Secale cereale]
Length = 200
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/193 (67%), Positives = 158/193 (81%), Gaps = 5/193 (2%)
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKK 238
YLLPE G CTLRI YSAH+ L+VKFQSHRSRDYTNPYLP+APSAID SG +DGKK
Sbjct: 1 YLLPELDGSCTLRINYSAHSVLNVKFQSHRSRDYTNPYLPLAPSAIDGSG-----VDGKK 55
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E ESNVLLAS+ENMQY VT+D LH VFSA+G VQKIA+F+KN G ALIQYPD+QTAV
Sbjct: 56 EEAESNVLLASVENMQYIVTIDALHEVFSAYGFVQKIAIFEKNSGFHALIQYPDIQTAVK 115
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
A+EALEGH IY+GG+CKLH+++SRHTDL++++NN+R RDYT ++ N +PSILG QP+
Sbjct: 116 AREALEGHSIYEGGYCKLHLAFSRHTDLNVRINNERGRDYTGGNSAPANHEPSILGPQPM 175
Query: 359 PMVGATANQYNGA 371
VG+TA Y+ A
Sbjct: 176 LPVGSTAPPYSSA 188
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL ++E +V+ID LH VFSA+GFV KI FEK +GF AL+Q+ D +TA A+ A
Sbjct: 61 NVLLASVENMQ-YIVTIDALHEVFSAYGFVQKIAIFEKNSGFHALIQYPDIQTAVKAREA 119
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G SI G C L + +S HTDL+V+ + R RDYT
Sbjct: 120 LEGHSI------YEGGYCKLHLAFSRHTDLNVRINNERGRDYT 156
>gi|195622556|gb|ACG33108.1| hypothetical protein [Zea mays]
Length = 276
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 124/169 (73%), Positives = 144/169 (85%), Gaps = 3/169 (1%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
+RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNVLLAS
Sbjct: 1 MRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNVLLAS 60
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEGHCIY
Sbjct: 61 IENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHCIY 120
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
DGG+CKLH+SYSRHTDL++K +++RSRDYTL S P V Q + Q PV
Sbjct: 121 DGGYCKLHLSYSRHTDLNVKAHDERSRDYTL-SDPNVQLQAA--AQTPV 166
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL +IE V++DVLH VFSAFG V KI FEK G QAL+Q+ D TA+ AK A
Sbjct: 55 NVLLASIENMQ-YAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQA 113
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G I + G C L ++YS HTDL+VK RSRDYT
Sbjct: 114 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 150
>gi|194695192|gb|ACF81680.1| unknown [Zea mays]
gi|414870435|tpg|DAA48992.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
gi|414870436|tpg|DAA48993.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 276
Score = 257 bits (656), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 124/169 (73%), Positives = 144/169 (85%), Gaps = 3/169 (1%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
+RIT+SAH DL++KFQSHRSRDYTNPYLPV +AI+ Q +VG DGK EPESNVLLAS
Sbjct: 1 MRITFSAHKDLNIKFQSHRSRDYTNPYLPVNQTAIEGIVQPTVGPDGKVKEPESNVLLAS 60
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFSAFG VQKIAMF+KNGG+QALIQYPD+ TA VAK+ALEGHCIY
Sbjct: 61 IENMQYAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQALEGHCIY 120
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV 358
DGG+CKLH+SYSRHTDL++K +++RSRDYTL S P V Q + Q PV
Sbjct: 121 DGGYCKLHLSYSRHTDLNVKAHDERSRDYTL-SDPNVQLQAA--AQTPV 166
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL +IE V++DVLH VFSAFG V KI FEK G QAL+Q+ D TA+ AK A
Sbjct: 55 NVLLASIENMQ-YAVTVDVLHTVFSAFGAVQKIAMFEKNGGMQALIQYPDITTAAVAKQA 113
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
L+G I + G C L ++YS HTDL+VK RSRDYT
Sbjct: 114 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAHDERSRDYT 150
>gi|307103430|gb|EFN51690.1| hypothetical protein CHLNCDRAFT_139935 [Chlorella variabilis]
Length = 353
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 195/312 (62%), Gaps = 21/312 (6%)
Query: 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQ 67
PQF P+KV+HLRNLP++ T EE+ E P+G +V G NRNQAF+EFA L Q
Sbjct: 51 PQF---TAPTKVIHLRNLPFDVTLEEIREFCAPWGTIV------GGNRNQAFVEFATLEQ 101
Query: 68 AIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL---LVTIEGTDARL 124
A+A++S+Y SS EPA+ RG++ +L +S R + N + D VL ++ I+ A+
Sbjct: 102 AMAIVSHYQSSPEPAKFRGRSSWLSFSGRDRLTNVTPSTDSPTPVLQVNVINIQPDLAQA 161
Query: 125 VSIDVLHLVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V++D+L+ VF A GFV K+ T+ K G A VQF D +TA++ +N L G+ IPR+LL +
Sbjct: 162 VTLDLLNSVFGAHGFVKKLVTYAKPEGGVVAWVQFPDAQTAATVRNTLQGQPIPRHLLND 221
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP---SAIDASGQLSVGLDGKKLE 240
+ P L + ++A DL+++ QS+ +RDYTN +P S I A S G DG
Sbjct: 222 HPNPPVLDMAFAAQPDLAIRAQSYCTRDYTNAAIPWGEPDLSMIQAMLPSSGGTDGP--- 278
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
SNVL S + M Y VT+D +H +FS +G VQKI +F+++G AL+QY DV TA A+
Sbjct: 279 --SNVLSVSFDQMTYPVTVDGVHTIFSTYGFVQKIHIFERDGRTVALVQYADVATADSAR 336
Query: 301 EALEGHCIYDGG 312
ALEGH +YDGG
Sbjct: 337 AALEGHAMYDGG 348
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 245 VLLASIENMQ----YAVTLDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVA 299
VL ++ N+Q AVTLD+L+ VF A G V+K+ + K GG+ A +Q+PD QTA
Sbjct: 146 VLQVNVINIQPDLAQAVTLDLLNSVFGAHGFVKKLVTYAKPEGGVVAWVQFPDAQTAATV 205
Query: 300 KEALEG-----HCIYDG-GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL 353
+ L+G H + D L ++++ DL+I+ + +RDYT + P S++
Sbjct: 206 RNTLQGQPIPRHLLNDHPNPPVLDMAFAAQPDLAIRAQSYCTRDYTNAAIPWGEPDLSMI 265
Query: 354 GQQPVPMVGAT 364
Q +P G T
Sbjct: 266 -QAMLPSSGGT 275
>gi|357501945|ref|XP_003621261.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355496276|gb|AES77479.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 592
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/184 (65%), Positives = 143/184 (77%), Gaps = 22/184 (11%)
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
+VFSAFGFVHKI TFEKTAGFQAL+QF+D ETA+SA++ALDGRSIPRYLLPE++G C LR
Sbjct: 398 VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLR 457
Query: 192 ITYSAHTDLSVKFQSHRSR----------------------DYTNPYLPVAPSAIDASGQ 229
I+YSAH DL++KFQS+RS DYTNP LPV SAI+ + Q
Sbjct: 458 ISYSAHRDLNIKFQSNRSSLSICPGDDQVLLFYRLGVTEAWDYTNPMLPVNHSAIEGAAQ 517
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
++G DGK++E ESNVLLASIENMQYAVT+DV++ VFSAFG VQKIAMF+KNG QALIQ
Sbjct: 518 PAIGPDGKRIETESNVLLASIENMQYAVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQ 577
Query: 290 YPDV 293
YP +
Sbjct: 578 YPGI 581
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 7/101 (6%)
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE 118
I D NQAI+M+SYYASSSEPAQVRGKTVY+QYSNR EIVNNK+ D+ GNVLLVTIE
Sbjct: 174 LIHVVDQNQAISMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDIPGNVLLVTIE 233
Query: 119 GTDARLVSIDVLHLV-------FSAFGFVHKITTFEKTAGF 152
G +A VSIDV+HL+ FS F + F T F
Sbjct: 234 GVEAGDVSIDVIHLLVLLAWQDFSGVAFSTVMAGFLVTGRF 274
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S+ QFRYTQ PSKVLHLRNLPWEC+EEEL+EL PFG++VNTKCNVGANRNQAF+EF
Sbjct: 4 SSSNNHQFRYTQTPSKVLHLRNLPWECSEEELVELCSPFGRIVNTKCNVGANRNQAFVEF 63
Query: 63 A 63
Sbjct: 64 V 64
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI------YDGGFCKLH 317
+VFSAFG V KIA F+K G QALIQ+ D +TA A++AL+G I G C L
Sbjct: 398 VVFSAFGFVHKIATFEKTAGFQALIQFTDAETAASARDALDGRSIPRYLLPEHVGSCNLR 457
Query: 318 ISYSRHTDLSIKVNNDRS 335
ISYS H DL+IK ++RS
Sbjct: 458 ISYSAHRDLNIKFQSNRS 475
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQF 158
+ NVLL +IE V++DV++ VFSAFG V KI FEK QAL+Q+
Sbjct: 528 ETESNVLLASIENMQY-AVTVDVINTVFSAFGTVQKIAMFEKNGQTQALIQY 578
>gi|414870438|tpg|DAA48995.1| TPA: hypothetical protein ZEAMMB73_491521 [Zea mays]
Length = 140
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/136 (75%), Positives = 117/136 (86%), Gaps = 1/136 (0%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S QFRYTQ PSKVLHLRN+PWECTEEEL++L KPFG+VVNT CNVGANRNQAF+EFAD
Sbjct: 5 SATQFRYTQTPSKVLHLRNMPWECTEEELVDLCKPFGRVVNTMCNVGANRNQAFVEFADQ 64
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
NQAI+M+SYYASSSEPAQVRGKTVY+QYSNRQEI NNK T D +GNVLLVT EG V
Sbjct: 65 NQAISMVSYYASSSEPAQVRGKTVYIQYSNRQEITNNKGTGDSSGNVLLVTFEGVQPNDV 124
Query: 126 SIDVLHLV-FSAFGFV 140
+I+V+HLV FS + +V
Sbjct: 125 TIEVIHLVSFSIYMYV 140
>gi|336244421|gb|AEI28160.1| polypyrimidine tract-binding protein 1 [Lobularia maritima]
Length = 126
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 94/126 (74%), Positives = 111/126 (88%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLLA
Sbjct: 1 LRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKVETQSNVLLAL 60
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHCIY
Sbjct: 61 IENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYADIATAAIAKEALEGHCIY 120
Query: 310 DGGFCK 315
DGG+CK
Sbjct: 121 DGGYCK 126
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL IE V++DVLH VFSA+G V KI FEK QAL+Q++D TA+ AK A
Sbjct: 55 NVLLALIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYADIATAAIAKEA 113
Query: 171 LDGRSI 176
L+G I
Sbjct: 114 LEGHCI 119
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 316 LHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 1 LRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 30
>gi|313757918|gb|ADR78667.1| polypyrimidine tract-binding protein 1 [Matthiola longipetala
subsp. bicornis]
Length = 125
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/124 (74%), Positives = 108/124 (87%)
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
C LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL
Sbjct: 2 CNLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKVETQSNVLL 61
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
A IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHC
Sbjct: 62 ALIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHC 121
Query: 308 IYDG 311
IYDG
Sbjct: 122 IYDG 125
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL IE V++DVLH VFSA+G V KI FEK QAL+Q+SD TA+ AK A
Sbjct: 58 NVLLALIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 116
Query: 171 LDGRSI 176
L+G I
Sbjct: 117 LEGHCI 122
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 314 CKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
C L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 2 CNLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 33
>gi|313757916|gb|ADR78666.1| polypyrimidine tract-binding protein 1 [Iberis amara]
Length = 120
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 105/120 (87%)
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 250
R++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLLA I
Sbjct: 1 RMSYSAHTDLNIKFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKIETQSNVLLALI 60
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
ENMQYAVT+DVLH VFSA+G +QKIA+F+KNG QALIQY D+ TA +AKEALEGHCIYD
Sbjct: 61 ENMQYAVTVDVLHTVFSAYGTLQKIAIFEKNGSTQALIQYSDJPTAQIAKEALEGHCIYD 120
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL IE V++DVLH VFSA+G + KI FEK QAL+Q+SD TA AK A
Sbjct: 54 NVLLALIENMQ-YAVTVDVLHTVFSAYGTLQKIAIFEKNGSTQALIQYSDJPTAQIAKEA 112
Query: 171 LDGRSI 176
L+G I
Sbjct: 113 LEGHCI 118
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 318 ISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
+SYS HTDL+IK + RSRDYT P P+
Sbjct: 2 MSYSAHTDLNIKFQSHRSRDYTNPYLPV 29
>gi|313757914|gb|ADR78665.1| polypyrimidine tract-binding protein 1 [Lepidium sativum]
Length = 116
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 99/116 (85%)
Query: 203 KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVL 262
KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL IENMQYAVT+DVL
Sbjct: 1 KFQSHRSRDYTNPYLPVNHTAMDGSMQPALGADGKKVESQSNVLLGLIENMQYAVTVDVL 60
Query: 263 HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
H VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHCIYDGG+CKL +
Sbjct: 61 HTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRL 116
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NVLL IE V++DVLH VFSA+G V KI FEK QAL+Q+SD TA+ AK A
Sbjct: 42 NVLLGLIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 100
Query: 171 LDGRSIPRYLLPENMGPCTLRI 192
L+G I + G C LR+
Sbjct: 101 LEGHCI------YDGGYCKLRL 116
>gi|427789193|gb|JAA60048.1| Putative hephaestus [Rhipicephalus pulchellus]
Length = 559
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 173/356 (48%), Gaps = 78/356 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + T+ +++ LG PFGKV N G +NQAF+E AD A+AM+ Y+
Sbjct: 89 PSRVVHIRNIPNDATDTDIVHLGVPFGKVTNVLQLKG--KNQAFLEMADEGSAVAMVDYF 146
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--------GNVLLVTIEGTDARLVSI 127
+S VRG+ VY+Q+SN +E+ + +A N +L + V++
Sbjct: 147 TKAS--PSVRGRVVYVQFSNHRELKTDNVHGALANQGGEGGGANTVLRVVVDNQIYPVTL 204
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+LH +FS G V KI TF K+ FQAL+QFSD A +AK ALDG+SI
Sbjct: 205 DLLHSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYNAC------- 257
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV---------------------------- 219
CTLRI YS T+L+VK+ + +SRD+TNP LP
Sbjct: 258 CTLRIEYSKLTNLNVKYNNDKSRDFTNPTLPTGDPTLDIGLAGSLGILASPFAAAGPGLT 317
Query: 220 -------------------------APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ 254
APSA A G + L G+ S VLL S N Q
Sbjct: 318 SPLTAAYAASATAGLPLGGFALSPSAPSAATALGMAGIRLPGQ--ATTSCVLLVSNLNEQ 375
Query: 255 YAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
VT D L +F +G V ++ +F+K ALIQ + Q A +A L+ +Y
Sbjct: 376 M-VTPDALFTLFGVYGDVIRVKILFNKKD--SALIQMAEPQQAQLAMSHLDKIKVY 428
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 202 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDV 261
V+F +HR N + +A + G + VL ++N Y VTLD+
Sbjct: 160 VQFSNHRELKTDNVHGALANQGGEGGG-------------ANTVLRVVVDNQIYPVTLDL 206
Query: 262 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321
LH +FS G V KI F K+ QALIQ+ DV A AK AL+G IY+ C L I YS
Sbjct: 207 LHSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYN-ACCTLRIEYS 265
Query: 322 RHTDLSIKVNNDRSRDYTLPSTP 344
+ T+L++K NND+SRD+T P+ P
Sbjct: 266 KLTNLNVKYNNDKSRDFTNPTLP 288
>gi|427796833|gb|JAA63868.1| Putative hephaestus, partial [Rhipicephalus pulchellus]
Length = 554
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 173/356 (48%), Gaps = 78/356 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + T+ +++ LG PFGKV N G +NQAF+E AD A+AM+ Y+
Sbjct: 84 PSRVVHIRNIPNDATDTDIVHLGVPFGKVTNVLQLKG--KNQAFLEMADEGSAVAMVDYF 141
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--------GNVLLVTIEGTDARLVSI 127
+S VRG+ VY+Q+SN +E+ + +A N +L + V++
Sbjct: 142 TKAS--PSVRGRVVYVQFSNHRELKTDNVHGALANQGGEGGGANTVLRVVVDNQIYPVTL 199
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+LH +FS G V KI TF K+ FQAL+QFSD A +AK ALDG+SI
Sbjct: 200 DLLHSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYN-------AC 252
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV---------------------------- 219
CTLRI YS T+L+VK+ + +SRD+TNP LP
Sbjct: 253 CTLRIEYSKLTNLNVKYNNDKSRDFTNPTLPTGDPTLDIGLAGSLGILASPFAAAGPGLT 312
Query: 220 -------------------------APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ 254
APSA A G + L G+ S VLL S N Q
Sbjct: 313 SPLTAAYAASATAGLPLGGFALSPSAPSAATALGMAGIRLPGQ--ATTSCVLLVSNLNEQ 370
Query: 255 YAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
VT D L +F +G V ++ +F+K ALIQ + Q A +A L+ +Y
Sbjct: 371 M-VTPDALFTLFGVYGDVIRVKILFNKKD--SALIQMAEPQQAQLAMSHLDKIKVY 423
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 202 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDV 261
V+F +HR N + +A + G + VL ++N Y VTLD+
Sbjct: 155 VQFSNHRELKTDNVHGALANQGGEGGG-------------ANTVLRVVVDNQIYPVTLDL 201
Query: 262 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321
LH +FS G V KI F K+ QALIQ+ DV A AK AL+G IY+ C L I YS
Sbjct: 202 LHSIFSRAGKVLKIVTFTKSNSFQALIQFSDVMGAQAAKLALDGQSIYN-ACCTLRIEYS 260
Query: 322 RHTDLSIKVNNDRSRDYTLPSTP 344
+ T+L++K NND+SRD+T P+ P
Sbjct: 261 KLTNLNVKYNNDKSRDFTNPTLP 283
>gi|414881409|tpg|DAA58540.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
gi|414881410|tpg|DAA58541.1| TPA: hypothetical protein ZEAMMB73_710436 [Zea mays]
Length = 314
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/161 (54%), Positives = 106/161 (65%), Gaps = 30/161 (18%)
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
MQY VT+DVLH VFSAFG VQKIA+F+KNG QALIQYPD+QTA AKEALEGH IY+GG
Sbjct: 1 MQYVVTIDVLHEVFSAFGFVQKIAIFEKNG-FQALIQYPDIQTAYAAKEALEGHSIYEGG 59
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 372
+CKLH+++SRHT+L++KVNN+R RDYT + + QPSILG QP+P VGA
Sbjct: 60 YCKLHLTFSRHTELNVKVNNERGRDYTKGNATPSSDQPSILGPQPIPSVGA--------- 110
Query: 373 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPG 413
A+PPA S+P + MPPG
Sbjct: 111 --------------------AIPPAQGSVPSAATNSVMPPG 131
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 7/91 (7%)
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
+V+IDVLH VFSAFGFV KI FEK GFQAL+Q+ D +TA +AK AL+G SI
Sbjct: 4 VVTIDVLHEVFSAFGFVQKIAIFEKN-GFQALIQYPDIQTAYAAKEALEGHSI------Y 56
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
G C L +T+S HT+L+VK + R RDYT
Sbjct: 57 EGGYCKLHLTFSRHTELNVKVNNERGRDYTK 87
>gi|340726548|ref|XP_003401618.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus
terrestris]
Length = 578
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 146/247 (59%), Gaps = 38/247 (15%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+P E +E E+I LG PFG+V N G +NQAF+E AD N A M++YYA
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKG--KNQAFLEMADENAAATMVNYYA 131
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEG----------------T 120
S AQ+RG+ VY+Q+SN +E+ ++T + A + VT+ G T
Sbjct: 132 SCM--AQLRGRAVYVQFSNHRELKTDQTHTNNANSNSQVTLPGQNQVAQTQAETQGGPNT 189
Query: 121 DARLV--------SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
R++ S+DVL+ +F+ FG V KI TF K FQAL+Q++D +A +AK +L+
Sbjct: 190 VLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLE 249
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
G++I CTLRI YS +L+VK+ + +SRDYTNP LP + +DA+ S+
Sbjct: 250 GQNIYNSC-------CTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAA---SL 299
Query: 233 GLDGKKL 239
L G+ L
Sbjct: 300 ALGGELL 306
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 4/146 (2%)
Query: 202 VKFQSHR--SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN-VLLASIENMQYAVT 258
V+F +HR D T+ + S + GQ V + + N VL +E M Y ++
Sbjct: 144 VQFSNHRELKTDQTHTNNANSNSQVTLPGQNQVAQTQAETQGGPNTVLRVIVEQMVYPIS 203
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
LDVL+ +F+ FG V KI F KN QALIQY D+ +A AK +LEG IY+ C L I
Sbjct: 204 LDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLEGQNIYN-SCCTLRI 262
Query: 319 SYSRHTDLSIKVNNDRSRDYTLPSTP 344
YS+ +L++K NND+SRDYT PS P
Sbjct: 263 DYSKMQNLNVKYNNDKSRDYTNPSLP 288
>gi|413955316|gb|AFW87965.1| hypothetical protein ZEAMMB73_428640 [Zea mays]
Length = 269
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 94/111 (84%)
Query: 96 RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155
RQEI+NNK+ + AGNVLLVTIEG + V+IDV+H+VFSAFG+VHKI TFEK AGFQAL
Sbjct: 137 RQEIINNKSPGETAGNVLLVTIEGVQSSDVTIDVIHMVFSAFGYVHKIATFEKAAGFQAL 196
Query: 156 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
+Q++D TAS+AK +LDGRSIP YLLPE++ C LRI++SAH DL++KFQS
Sbjct: 197 IQYTDAATASAAKESLDGRSIPSYLLPEHVTSCCLRISFSAHKDLNIKFQS 247
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 7/100 (7%)
Query: 240 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
E NVLL +IE +Q + VT+DV+HMVFSAFG V KIA F+K G QALIQY D TA
Sbjct: 148 ETAGNVLLVTIEGVQSSDVTIDVIHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASA 207
Query: 299 AKEALEGHCI------YDGGFCKLHISYSRHTDLSIKVNN 332
AKE+L+G I C L IS+S H DL+IK +
Sbjct: 208 AKESLDGRSIPSYLLPEHVTSCCLRISFSAHKDLNIKFQS 247
>gi|380018871|ref|XP_003693343.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Apis
florea]
Length = 578
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 145/247 (58%), Gaps = 38/247 (15%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+P E +E E+I LG PFG+V N G +NQAF+E AD N A M++YYA
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGIPFGRVTNVLVLKG--KNQAFLEMADENAAATMVNYYA 131
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEG----------------T 120
S AQ+RG+ VY+Q+SN +E+ ++T + A + V I G T
Sbjct: 132 SCM--AQLRGRAVYVQFSNHRELKTDQTHTNNANSNNQVAIPGQNQVAQTQAETQGGPNT 189
Query: 121 DARLV--------SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
R++ S+DVL+ +F+ FG V KI TF K FQAL+Q++D +A +AK +L+
Sbjct: 190 VLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLE 249
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
G++I CTLRI YS +L+VK+ + +SRDYTNP LP + +DA+ S+
Sbjct: 250 GQNIYNSC-------CTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAA---SL 299
Query: 233 GLDGKKL 239
L G+ L
Sbjct: 300 ALGGELL 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E M Y ++LDVL+ +F+ FG V KI F KN QALIQY D+ +A AK +LE
Sbjct: 190 VLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLE 249
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ C L I YS+ +L++K NND+SRDYT PS P
Sbjct: 250 GQNIYN-SCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLP 288
>gi|440804444|gb|ELR25321.1| hnRNPL/PTB/hephaestus splicing factor subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 575
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 181/360 (50%), Gaps = 56/360 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS VLH+RNLP +CTE+EL+ + PFG+V K + + Q F++ D+ A A++ Y
Sbjct: 116 PSSVLHVRNLPMDCTEQELVTIACPFGRV--EKVLLLKGKTQGFVQMQDVQSASALVQCY 173
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ + +RGK VY QYS Q VN T + + ++LLVT+ V+ID+LH VFS
Sbjct: 174 SQAQ--VNIRGKPVYFQYSQHQA-VNTATGDEQSNHILLVTVTNL-VYPVTIDILHQVFS 229
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
+G +HKI F K GFQAL+Q D A +AK ALDG++I G CTLRI YS
Sbjct: 230 KYGAIHKIVIFSKK-GFQALIQMGDKNQAQAAKQALDGQNI-------YSGCCTLRIQYS 281
Query: 196 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD--GKKLEPESN--------- 244
L+VK+ + +SRD+TN LP +A A GQ L+ G L P+++
Sbjct: 282 NLPSLNVKYNNDKSRDFTNNNLPSGDAAGPAVGQFGGALNPLGLGLFPDASYGGYHVSPA 341
Query: 245 ---------------------VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
+++ +E + VT DVL +F +G V ++ + N
Sbjct: 342 AFGYGQKQGAVGMAMGMGPSVLIVNGLEAER--VTPDVLFTLFGVYGDVLRVKIL-YNKT 398
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR----SRDYT 339
AL+Q+ Q A A L ++ L I++S+H +++ ++DYT
Sbjct: 399 DTALVQFATPQQAETALANLNQAPLFGR---TLTINFSKHNTIAMPREGTEGAHLTKDYT 455
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
E +++LL ++ N+ Y VT+D+LH VFS +G + KI +F K G QALIQ D A A
Sbjct: 202 EQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSKK-GFQALIQMGDKNQAQAA 260
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
K+AL+G IY G C L I YS L++K NND+SRD+T + P ++ +GQ
Sbjct: 261 KQALDGQNIYS-GCCTLRIQYSNLPSLNVKYNNDKSRDFTNNNLPSGDAAGPAVGQ 315
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
V+ F++ PP VLH+ N+P +EE++ L +G+V++ + +R +E A
Sbjct: 464 VAGSKNFQHIFPPGSVLHVSNIPASASEEDIKNLFAQYGRVLSFRF-FAKDRRMGHVEMA 522
Query: 64 DLNQAIAMISY 74
+ I + Y
Sbjct: 523 STTEGIEALLY 533
>gi|350418407|ref|XP_003491847.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Bombus
impatiens]
Length = 578
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 38/247 (15%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+P E +E E+I LG PFG+V N G +NQAF+E AD N A M++YYA
Sbjct: 74 SRVIHIRNIPNEVSEGEIIHLGVPFGRVTNVLVLKG--KNQAFLEMADENAAATMVNYYA 131
Query: 77 SSSEPAQVRGKTVYLQYSNRQEI------VNN----------------KTTADVAG--NV 112
S AQ+RG+ VY+Q+SN +E+ NN +T A+ G N
Sbjct: 132 SCM--AQLRGRAVYVQFSNHRELKTDQTHTNNANSNNQVALPGQNQVAQTQAETQGGPNT 189
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
+L I +S+DVL+ +F+ FG V KI TF K FQAL+Q++D +A +AK +L+
Sbjct: 190 VLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLE 249
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
G++I CTLRI YS +L+VK+ + +SRDYTNP LP + +DA+ S+
Sbjct: 250 GQNIYNSC-------CTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAA---SL 299
Query: 233 GLDGKKL 239
L G+ L
Sbjct: 300 ALGGELL 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E M Y ++LDVL+ +F+ FG V KI F KN QALIQY D+ +A AK +LE
Sbjct: 190 VLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLE 249
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ C L I YS+ +L++K NND+SRDYT PS P
Sbjct: 250 GQNIYN-SCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLP 288
>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia
vitripennis]
Length = 587
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 142/256 (55%), Gaps = 46/256 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E +E E+I LG PFG+V N G +NQAF+E AD A M++Y
Sbjct: 73 PSRVIHIRNIPNEVSEGEIIHLGMPFGRVTNVLVLKG--KNQAFLEMADEGSAATMVTYC 130
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-------------------VNNKTTADVAG------ 110
AS PAQ+RG+ VY+Q+SN +E+ +N T+ AG
Sbjct: 131 ASC--PAQLRGRAVYVQFSNHRELKTDQGHNNAVGSPTNAIANTSNNTSVQAAGQGQVQG 188
Query: 111 -------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
N +L I +S+DVL+ +F+ +G V KI TF K FQAL+Q++D +
Sbjct: 189 SETQGGPNTVLRVIVEHQIYPISLDVLYQIFTRYGKVLKIVTFTKNGTFQALIQYADMLS 248
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA 223
A +AK LDG++I CTLRI YS +L+VK+ + +SRDYTNP LP +
Sbjct: 249 AQTAKFNLDGQNIYNSC-------CTLRIDYSKMQNLNVKYNNDKSRDYTNPTLPTGDAN 301
Query: 224 IDASGQLSVGLDGKKL 239
+DA+ S+ L G+ L
Sbjct: 302 LDAA---SLALGGELL 314
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
+++ A+GQ V + P + VL +E+ Y ++LDVL+ +F+ +G V KI F KN
Sbjct: 176 TSVQAAGQGQVQGSETQGGPNT-VLRVIVEHQIYPISLDVLYQIFTRYGKVLKIVTFTKN 234
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
G QALIQY D+ +A AK L+G IY+ C L I YS+ +L++K NND+SRDYT P
Sbjct: 235 GTFQALIQYADMLSAQTAKFNLDGQNIYN-SCCTLRIDYSKMQNLNVKYNNDKSRDYTNP 293
Query: 342 STPM----VNSQPSILGQQPVP--MVGATANQ 367
+ P +++ LG + +P ++GA +Q
Sbjct: 294 TLPTGDANLDAASLALGGELLPQLLLGAAGSQ 325
>gi|281210224|gb|EFA84392.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 468
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 131/212 (61%), Gaps = 13/212 (6%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+ Q YT PSKV+HLRNLP +CTE E++ L PFG+V + G ++Q FI+ ADL
Sbjct: 37 SKKQKNYTPTPSKVVHLRNLPIDCTEHEIMALASPFGQVEHILILKG--KSQGFIQMADL 94
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
A A I +Y + +R K ++QYSNR+EI + ++ + N+LLVTI V
Sbjct: 95 TSATAFIQFYTTIQ--GSIRSKNFFVQYSNREEIT-SYSSVETPNNILLVTISNI-IYPV 150
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+IDVL+ +FS +G V KI F K+ FQ+L+Q T++A +AK LDG++I
Sbjct: 151 TIDVLYQLFSKYGSVLKILIFSKSGNFQSLIQLHTTDSAINAKRELDGQNIYN------- 203
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G CTL+I YS+ +L +K+ + +SRD+TNP L
Sbjct: 204 GCCTLKIQYSSLNNLRIKYNNDKSRDFTNPTL 235
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
+E +N+LL +I N+ Y VT+DVL+ +FS +G V KI +F K+G Q+LIQ +A+
Sbjct: 132 VETPNNILLVTISNIIYPVTIDVLYQLFSKYGSVLKILIFSKSGNFQSLIQLHTTDSAIN 191
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT----LPSTPMVNSQPSILG 354
AK L+G IY+G C L I YS +L IK NND+SRD+T LP T + S P G
Sbjct: 192 AKRELDGQNIYNGC-CTLKIQYSSLNNLRIKYNNDKSRDFTNPTLLPGTTSLLSNPIGFG 250
Query: 355 QQPVP 359
P P
Sbjct: 251 ISPAP 255
>gi|241997960|ref|XP_002433623.1| polypyrimidine tract binding protein, putative [Ixodes scapularis]
gi|215495382|gb|EEC05023.1| polypyrimidine tract binding protein, putative [Ixodes scapularis]
Length = 512
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 172/343 (50%), Gaps = 68/343 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + T+ +++ LG PFGKV N G +NQAF+E +D A++M+ Y+
Sbjct: 48 PSRVVHIRNIPNDATDTDIVHLGIPFGKVTNVLQLKG--KNQAFLEMSDEASAVSMVDYF 105
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN--------------------------------NK 103
+S VRG+ VY+Q+SN +E+ N+
Sbjct: 106 TKAS--PTVRGRVVYVQFSNHRELKTEGMHGNLVSGSVVFAPAVMGRVFRGGRQVAQANQ 163
Query: 104 TTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
+ N +L + VS+D+LH +FS G V KI TF K+ FQAL+QFSD
Sbjct: 164 GESPGGSNTVLRVVVDNQIYPVSLDLLHGIFSRAGKVLKIVTFTKSNTFQALIQFSDVMG 223
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA 223
A +AK ALDG+SI CTLRI YS T+L+VK+ + +SRD+TNP LP
Sbjct: 224 AQAAKLALDGQSIYN-------ACCTLRIEYSKLTNLNVKYNNDKSRDFTNPTLPTGDPT 276
Query: 224 IDA------------------SGQLSVGLDGKKLEPE---SNVLLASIENMQYAVTLDVL 262
+D S ++G+ G +L + S VLL S N Q VT D L
Sbjct: 277 LDNLGLAGLPLGGFALSPSNPSAATALGMAGIRLPGQGTASCVLLVSNLNEQM-VTPDAL 335
Query: 263 HMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALE 304
+F +G V ++ +F+K ALIQ + Q A +A L+
Sbjct: 336 FTLFGVYGDVIRVKILFNKKD--SALIQMAEPQQAQLAMSHLD 376
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL ++N Y V+LD+LH +FS G V KI F K+ QALIQ+ DV A AK AL+
Sbjct: 173 VLRVVVDNQIYPVSLDLLHGIFSRAGKVLKIVTFTKSNTFQALIQFSDVMGAQAAKLALD 232
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ C L I YS+ T+L++K NND+SRD+T P+ P
Sbjct: 233 GQSIYN-ACCTLRIEYSKLTNLNVKYNNDKSRDFTNPTLP 271
>gi|213513374|ref|NP_001133504.1| polypyrimidine tract-binding protein 2 [Salmo salar]
gi|209154262|gb|ACI33363.1| Polypyrimidine tract-binding protein 2 [Salmo salar]
Length = 520
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 171/372 (45%), Gaps = 70/372 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PPS+VLH+R LP E +E E+I LG PFGKV N G +NQAF+E AI
Sbjct: 51 RMEAPPSRVLHIRKLPNETSETEVIALGLPFGKVTNILTLKG--KNQAFLELGTEEAAIT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI---VNNKTTADVAGNVLLVT-----IEGTDA 122
M++YY S+ VR V++QYSN +E+ N+ V V V G+D
Sbjct: 109 MVNYY--STVTPHVRNVPVFIQYSNHKELKTDAGNQRAQAVLQAVSAVQGGGTPTSGSDL 166
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
L V++DVL +FS FG V KI TF K FQAL+QF+D TA
Sbjct: 167 ALTAASSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTA 226
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 224
AK ALDG++I CTLRI YS +L+VK+ + +SRDYT P LP
Sbjct: 227 QQAKIALDGQNIYN-------SCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQP 279
Query: 225 DASGQLSVGLDGKK-------LEP---------------------ESNVLLASIENMQYA 256
++ GK L P S VLLAS N +
Sbjct: 280 AMDPNMAAAFQGKDSNSLLGALSPLNAAAAAAAAAGRVALSGHSGSSGVLLASNLN-EEM 338
Query: 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
VT L +F +G Q++ + N ALIQ D A +A L G +Y +
Sbjct: 339 VTPQSLFTLFGVYGDTQRVKIL-YNKKDSALIQMADASQAQLAMSHLNGQKMYGK---VI 394
Query: 317 HISYSRHTDLSI 328
++ S+HT + +
Sbjct: 395 RVALSKHTSVQL 406
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 93/180 (51%), Gaps = 6/180 (3%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 251
I YS H +L + R++ A SA+ G + G D S VL I+
Sbjct: 127 IQYSNHKELKTDAGNQRAQAVLQ-----AVSAVQGGGTPTSGSDLALTAASSPVLRIIID 181
Query: 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311
NM Y VTLDVL +FS FG V KI F KN QAL+Q+ D TA AK AL+G IY+
Sbjct: 182 NMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTAQQAKIALDGQNIYN- 240
Query: 312 GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGA 371
C L I YS+ +L++K NND+SRDYT P P + QP++ G +N GA
Sbjct: 241 SCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAMDPNMAAAFQGKDSNSLLGA 300
>gi|189241313|ref|XP_966484.2| PREDICTED: similar to polypyrimidine tract binding protein
[Tribolium castaneum]
Length = 822
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 139/252 (55%), Gaps = 54/252 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + +E E++ LG PFG+V N V +NQAF+E + + A M++Y+
Sbjct: 300 PSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVL--VLKGKNQAFLEMGEESSATTMVNYF 357
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA----------------------------- 106
+SS AQ+RG+ VY+QYSN +E+ ++T +
Sbjct: 358 SSSM--AQLRGRAVYVQYSNHKELKTDQTHSNAVTQAALQAAQALTSTQNSITPTSTPAT 415
Query: 107 ------DVAG---NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
D+ G VL V IE +S+D+LHL+F FG V KI TF K FQAL+Q
Sbjct: 416 PVTNGQDIQGGPNTVLRVIIEHM-IYPISLDILHLIFQRFGKVLKIVTFTKNNSFQALIQ 474
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
+ DT +A SAK ALDG++I CTLRI YS + L+VK+ + +SRDYTNP L
Sbjct: 475 YPDTASAQSAKQALDGQNIYNSC-------CTLRIDYSKMSSLNVKYNNDKSRDYTNPNL 527
Query: 218 PVAPSAIDASGQ 229
P DA+ Q
Sbjct: 528 PTG----DANDQ 535
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL IE+M Y ++LD+LH++F FG V KI F KN QALIQYPD +A AK+A
Sbjct: 428 NTVLRVIIEHMIYPISLDILHLIFQRFGKVLKIVTFTKNNSFQALIQYPDTASAQSAKQA 487
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
L+G IY+ C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 488 LDGQNIYNSC-CTLRIDYSKMSSLNVKYNNDKSRDYTNPNLP 528
>gi|328712476|ref|XP_003244820.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 581
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 33/225 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E TE E+I LG PFGKV N G +NQAF+E AD A AM++Y+
Sbjct: 48 PSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKG--KNQAFLEMADETSASAMVTYF 105
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT--------------------TADVAG--NVL 113
+ + AQ+RG+ V++Q+SN +E+ ++T +DV G N +
Sbjct: 106 TTCT--AQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTV 163
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
L I +S+DVL+ +FS +G V KI TF K FQ L+Q+ D TA SAK +LDG
Sbjct: 164 LRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDG 223
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
++I C LRI YS + L+VK+ + +SRDYTNP LP
Sbjct: 224 QNI-------YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 261
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E+M + ++LDVL+ +FS +G V KI F KN Q LIQYPDV TA AK +L+
Sbjct: 163 VLRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLD 222
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY CKL I YS+ + L++K NND+SRDYT P+ P
Sbjct: 223 GQNIYT-SCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 261
>gi|328712478|ref|XP_001947870.2| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Acyrthosiphon pisum]
Length = 613
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 33/225 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E TE E+I LG PFGKV N G +NQAF+E AD A AM++Y+
Sbjct: 80 PSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKG--KNQAFLEMADETSASAMVTYF 137
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT--------------------TADVAG--NVL 113
+ + AQ+RG+ V++Q+SN +E+ ++T +DV G N +
Sbjct: 138 TTCT--AQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTV 195
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
L I +S+DVL+ +FS +G V KI TF K FQ L+Q+ D TA SAK +LDG
Sbjct: 196 LRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDG 255
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
++I C LRI YS + L+VK+ + +SRDYTNP LP
Sbjct: 256 QNI-------YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 293
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E+M + ++LDVL+ +FS +G V KI F KN Q LIQYPDV TA AK +L+
Sbjct: 195 VLRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLD 254
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY CKL I YS+ + L++K NND+SRDYT P+ P
Sbjct: 255 GQNIYT-SCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 293
>gi|328712480|ref|XP_003244821.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 3
[Acyrthosiphon pisum]
Length = 632
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 33/225 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E TE E+I LG PFGKV N G +NQAF+E AD A AM++Y+
Sbjct: 80 PSRVIHIRNIPNEVTEAEVIHLGIPFGKVTNVLVLKG--KNQAFLEMADETSASAMVTYF 137
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT--------------------TADVAG--NVL 113
+ + AQ+RG+ V++Q+SN +E+ ++T +DV G N +
Sbjct: 138 TTCT--AQLRGRAVFIQFSNHKELKTDQTHSNANASAQAALQAAQALAGQSDVQGGPNTV 195
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
L I +S+DVL+ +FS +G V KI TF K FQ L+Q+ D TA SAK +LDG
Sbjct: 196 LRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLDG 255
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
++I C LRI YS + L+VK+ + +SRDYTNP LP
Sbjct: 256 QNI-------YTSCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 293
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E+M + ++LDVL+ +FS +G V KI F KN Q LIQYPDV TA AK +L+
Sbjct: 195 VLRVIVEHMVFPISLDVLYEIFSRYGKVLKIVTFTKNNSFQVLIQYPDVVTAQSAKLSLD 254
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY CKL I YS+ + L++K NND+SRDYT P+ P
Sbjct: 255 GQNIYT-SCCKLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 293
>gi|270013160|gb|EFA09608.1| hypothetical protein TcasGA2_TC011728 [Tribolium castaneum]
Length = 876
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 139/254 (54%), Gaps = 56/254 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + +E E++ LG PFG+V N V +NQAF+E + + A M++Y+
Sbjct: 352 PSRVIHIRNIPNDVSEAEIVHLGIPFGRVTNVL--VLKGKNQAFLEMGEESSATTMVNYF 409
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA----------------------------- 106
+SS AQ+RG+ VY+QYSN +E+ ++T +
Sbjct: 410 SSSM--AQLRGRAVYVQYSNHKELKTDQTHSNANASAQAALQAAQALTSTQNSITPTSTP 467
Query: 107 --------DVAG---NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155
D+ G VL V IE +S+D+LHL+F FG V KI TF K FQAL
Sbjct: 468 ATPVTNGQDIQGGPNTVLRVIIEHM-IYPISLDILHLIFQRFGKVLKIVTFTKNNSFQAL 526
Query: 156 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
+Q+ DT +A SAK ALDG++I CTLRI YS + L+VK+ + +SRDYTNP
Sbjct: 527 IQYPDTASAQSAKQALDGQNIYNSC-------CTLRIDYSKMSSLNVKYNNDKSRDYTNP 579
Query: 216 YLPVAPSAIDASGQ 229
LP DA+ Q
Sbjct: 580 NLPTG----DANDQ 589
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL IE+M Y ++LD+LH++F FG V KI F KN QALIQYPD +A AK+A
Sbjct: 482 NTVLRVIIEHMIYPISLDILHLIFQRFGKVLKIVTFTKNNSFQALIQYPDTASAQSAKQA 541
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
L+G IY+ C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 542 LDGQNIYNSC-CTLRIDYSKMSSLNVKYNNDKSRDYTNPNLP 582
>gi|218189437|gb|EEC71864.1| hypothetical protein OsI_04570 [Oryza sativa Indica Group]
Length = 443
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 56/369 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E EL+++ +PFG V K + +NQA ++ DL A+ +I YY
Sbjct: 4 PSKVIHIRNVGHEISESELLQVVQPFGTV--AKLVMLRAKNQALVQMEDLASAVNVIQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVAGNVLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ VYLQYS+ QE+ ++++ + +LLVTI ++I+V
Sbjct: 62 -NTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQEEPNRILLVTIHHM-LYPITIEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS +GFV KI TF+K+AGFQ L+Q+ ++A A AL GR+I G C
Sbjct: 119 LHQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVA------------PSAI-------DASGQL 230
L I YS ++L V + + RSRD+TNP LP PS++ D Q+
Sbjct: 172 LDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQM 231
Query: 231 S-----VGLDGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
S G L P + LL S N + D L +FS +G + +I +
Sbjct: 232 SKAAMIAAAFGGTLPPGVSGINDRCTLLVSNLNTD-KIDEDKLFNLFSMYGNIVRIKIL- 289
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
KN ALIQ D A +A L+G ++ KL ++YS++ ++ + +RDY+
Sbjct: 290 KNKPDHALIQMADGLQAELAVLYLKGAMLFGK---KLEVNYSKYPTVTADPD---ARDYS 343
Query: 340 LPSTPMVNS 348
NS
Sbjct: 344 TSHLNRFNS 352
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N YL + + Q S G + + EP + +LL +I +M Y +T++VLH VFS +G V+
Sbjct: 72 NVYLQYSSHQELTTDQSSHGRNPDQEEP-NRILLVTIHHMLYPITIEVLHQVFSPYGFVE 130
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G Q LIQY Q+A+ A AL G IYDG C+L I YS ++L + NND
Sbjct: 131 KIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYDGC-CQLDIQYSNLSELQVHYNND 189
Query: 334 RSRDYTLPSTPM----VNSQPS 351
RSRD+T PS P +SQPS
Sbjct: 190 RSRDFTNPSLPTEQRSRSSQPS 211
>gi|388522351|gb|AFK49237.1| unknown [Lotus japonicus]
Length = 86
Score = 157 bits (398), Expect = 8e-36, Method: Composition-based stats.
Identities = 72/73 (98%), Positives = 73/73 (100%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
MASVS+QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI
Sbjct: 1 MASVSTQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMIS 73
EFADLNQAIAMIS
Sbjct: 61 EFADLNQAIAMIS 73
>gi|302782650|ref|XP_002973098.1| hypothetical protein SELMODRAFT_173175 [Selaginella moellendorffii]
gi|302790002|ref|XP_002976769.1| hypothetical protein SELMODRAFT_105564 [Selaginella moellendorffii]
gi|300155807|gb|EFJ22438.1| hypothetical protein SELMODRAFT_105564 [Selaginella moellendorffii]
gi|300158851|gb|EFJ25472.1| hypothetical protein SELMODRAFT_173175 [Selaginella moellendorffii]
Length = 436
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 183/349 (52%), Gaps = 62/349 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH+RN+ E TE +L+ L +PFG V +K + +NQA ++ D+N AI+ + YY
Sbjct: 4 PSKVLHVRNVGQEITESDLLGLVQPFGSV--SKMVLLRTKNQALLQMQDVNAAISAMQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--------------GNVLLVTIEGTD 121
+S +P+ VRG+ VY+Q+S+ QE+ TT+D A +LLVTI
Sbjct: 62 -TSVQPS-VRGRNVYIQFSSHQEL----TTSDQATQPRRPAGDQDQQPNRILLVTIHHP- 114
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+++DVLH VF+ G V KI TF+K+AG QAL+Q+++ ++A AK+ L GR+I
Sbjct: 115 LYPITVDVLHQVFNPHGHVEKIVTFQKSAGLQALIQYNNQQSAVYAKSLLQGRNIYD--- 171
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP-------------------- 221
G CTL I +S +L V F + R+RDYTN LP P
Sbjct: 172 ----GCCTLDIQFSNLQELQVNFNNERTRDYTNSSLPNEPGRSQNPPGGNNMMVPMTPSA 227
Query: 222 --SAIDASGQLSVGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMF 278
+A + G L G+ G E LL S N+ V D L +FS +G + +I M
Sbjct: 228 AAAAAASGGTLPPGVTGTN---ERCTLLVS--NLAPEKVDADKLFNLFSNYGNIIRIKML 282
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
N ALIQ D A +A L G +++ ++ +++S+H+ ++
Sbjct: 283 -HNKPDHALIQMGDGYQAELAVYYLRGTMLFEK---RMEVNFSKHSQIN 327
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 47/224 (20%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN-------ALDGRSIPRYL 180
D+L LV FG V K+ QAL+Q D A SA ++ GR++
Sbjct: 21 DLLGLV-QPFGSVSKMVLLRTKN--QALLQMQDVNAAISAMQYYTSVQPSVRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
I +S+H +L+ Q+ T P P G + +
Sbjct: 74 ----------YIQFSSHQELTTSDQA------TQPRRPA----------------GDQDQ 101
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+ +LL +I + Y +T+DVLH VF+ G V+KI F K+ GLQALIQY + Q+AV AK
Sbjct: 102 QPNRILLVTIHHPLYPITVDVLHQVFNPHGHVEKIVTFQKSAGLQALIQYNNQQSAVYAK 161
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
L+G IYDG C L I +S +L + NN+R+RDYT S P
Sbjct: 162 SLLQGRNIYDGC-CTLDIQFSNLQELQVNFNNERTRDYTNSSLP 204
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
++Y P+K++H+ +LP + TE +L+ P G ++N K + QA + F + QA
Sbjct: 351 YKYCCSPTKMIHVSSLPTDITEVDLMNHLSPHGNILNVKIFEANGKKQALVHFDNEEQAT 410
Query: 70 -AMISYYASSSEPAQVR 85
A++ +A+ + + VR
Sbjct: 411 EALVCKHATVVKKSTVR 427
>gi|443711043|gb|ELU04990.1| hypothetical protein CAPTEDRAFT_200421 [Capitella teleta]
Length = 524
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 165/336 (49%), Gaps = 71/336 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH R +P + TE E+++LG PFG + N + +NQA++E D+ A A++S Y
Sbjct: 31 PSKVLHFRGVPADATEGEVVQLGLPFGHMTNLV--LAKKKNQAWLEMVDVQSAQAVVSCY 88
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-----------------TTADVAGNVLLVTIE 118
P Q+RG+TVY+Q+SN +I+ + T D VL V +E
Sbjct: 89 --HDRPPQIRGRTVYVQFSNY-DILKTEASQQGAQAALQAAQQLMTNVDDPKTVLRVIVE 145
Query: 119 GTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 178
V+IDVL +FS +G V KI TF K FQAL+QFSD A +AK +L G++I
Sbjct: 146 NM-LYPVTIDVLKSIFSRYGQVLKIVTFSKNNTFQALIQFSDQIAAQTAKVSLHGQNIYN 204
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA----IDASGQLSVGL 234
G CTLRI +S L+VK+ + +SRDYTNP LP +DA G S+GL
Sbjct: 205 -------GCCTLRIDFSKLQALNVKYNNDKSRDYTNPNLPSGDGQPAMPVDAQGAGSMGL 257
Query: 235 DGKKL--------------------------------EPESN-VLLASIENMQYAVTLDV 261
L +P++ VLL S N Q VT D
Sbjct: 258 SAAGLGAFQAAVPFSLAGLNAAAGLNAMNAAGLRLPGQPQTGAVLLVSNLNEQ-KVTPDA 316
Query: 262 LHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTA 296
L +F +G V ++ MF+K ALIQ+ D A
Sbjct: 317 LFTLFGVYGDVIRVKIMFNKKD--NALIQFADAAQA 350
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +ENM Y VT+DVL +FS +G V KI F KN QALIQ+ D A AK +L
Sbjct: 139 VLRVIVENMLYPVTIDVLKSIFSRYGQVLKIVTFSKNNTFQALIQFSDQIAAQTAKVSLH 198
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA 363
G IY+ G C L I +S+ L++K NND+SRDYT P+ P + QP++ PV GA
Sbjct: 199 GQNIYN-GCCTLRIDFSKLQALNVKYNNDKSRDYTNPNLPSGDGQPAM----PVDAQGA 252
>gi|300681488|emb|CBH32582.1| RNA recognition domain containing protein,expressed [Triticum
aestivum]
Length = 439
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 181/340 (53%), Gaps = 49/340 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+ E +E +L+++ +PFG V K + +NQA ++ DL+ +I+ I YY
Sbjct: 4 PSRVIHIRNVGHEISETDLLQVVQPFGAV--AKLVMLRTKNQALVQMEDLSASISAIQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVAGNVLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ VYLQYS+ QE+ ++++ D +LLVT+ ++++V
Sbjct: 62 -TTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQDEPNRILLVTVHHM-LYPMTVEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS +GFV KI TF+KTAGFQAL+QF ++A A AL GR+I G C
Sbjct: 119 LHQVFSPYGFVEKIVTFQKTAGFQALIQFQSRQSAIQAAGALHGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVA------------PSAID------ASGQLS 231
L I YS ++L V + + RSRD+TNP LP PS A GQ +
Sbjct: 172 LDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRSSQLGYNDPSLFGFQQPGAAYGQAA 231
Query: 232 V--GLDGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
V G L P + L+ S N + D L +FS +G + +I + +N
Sbjct: 232 VIAAAFGGTLPPGVTGTNDRCTLIVSNLNSD-KIDADKLFNLFSIYGNIVRIKVL-RNKP 289
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
AL+Q D A +A L+G + KL +++S++
Sbjct: 290 DHALVQMADGLQAELAIHYLKGAMLLGQ---KLEVNFSKY 326
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 123/264 (46%), Gaps = 51/264 (19%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
++ I + D+L +V FG V K+ QALVQ D + SA
Sbjct: 7 VIHIRNVGHEISETDLLQVV-QPFGAVAKLVMLRTKN--QALVQMEDLSASISA------ 57
Query: 174 RSIPRY--LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
I Y + P G + + YS+H +L+ SH
Sbjct: 58 --IQYYTTIQPSVRGR-NVYLQYSSHQELTTDQSSH------------------------ 90
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + + EP + +LL ++ +M Y +T++VLH VFS +G V+KI F K G QALIQ+
Sbjct: 91 -GRNPDQDEP-NRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKTAGFQALIQFQ 148
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP------- 344
Q+A+ A AL G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 149 SRQSAIQAAGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRS 207
Query: 345 --MVNSQPSILG-QQPVPMVGATA 365
+ + PS+ G QQP G A
Sbjct: 208 SQLGYNDPSLFGFQQPGAAYGQAA 231
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ L E +E+ ++E G ++ +K + + QA ++F +A
Sbjct: 354 YRHCCAPTKIIHISALSPEISEDAILEHLGEHGTIIKSKLFEASGKTQALVQFESEEEAT 413
Query: 70 -AMISYYASSSEPAQVR 85
A++ +AS E + +R
Sbjct: 414 EALVCKHASKLEGSTIR 430
>gi|356559629|ref|XP_003548101.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 439
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 180/345 (52%), Gaps = 51/345 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A+ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDIPSAVNALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
A+ +P+ +RG+ VY+Q+S+ QE+ N+ D +LLVT+ ++ DVLH
Sbjct: 62 ANV-QPS-IRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHM-LYPITADVLHQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS GFV KI TF+K+AGFQAL+Q+ ++A +A++ L GR+I G C L I
Sbjct: 119 VFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA-------PSAIDASGQLSVGLDG--------- 236
+S +L V + + RSRD+TNP LP P DA+G S G
Sbjct: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAAGMYSGARAGGFSQMANAA 231
Query: 237 --------------KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
VL+A++ + + D L +FS +G + +I + +N
Sbjct: 232 AIAAAFGGGLPPGITGTNERCTVLVANLNPDR--IDEDKLFNLFSIYGNIVRIKLL-RNK 288
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
ALIQ D A +A L+G ++ +L ++YS+H +++
Sbjct: 289 PDHALIQMGDGFQAELAVHFLKGAMLFGK---RLEVNYSKHANIT 330
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 116/249 (46%), Gaps = 53/249 (21%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDI---PSAVNALQ--------FYANVQP 66
Query: 188 C----TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243
+ + +S+H +L+ Q+ D EP +
Sbjct: 67 SIRGRNVYVQFSSHQELTTMDQNQARED----------------------------EP-N 97
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
+LL ++ +M Y +T DVLH VFS G V+KI F K+ G QALIQY Q+AV A+ L
Sbjct: 98 RILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTL 157
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA 363
+G IYDG C+L I +S +L + NNDRSRD+T P+ P G+ P G
Sbjct: 158 QGRNIYDGC-CQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQK-----GRSSQPGYGD 211
Query: 364 TANQYNGAQ 372
A Y+GA+
Sbjct: 212 AAGMYSGAR 220
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL LP + TEEE++ L + G +VN+K + QA ++F QA
Sbjct: 354 YRYCCSPTKMVHLSTLPQDITEEEVVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQAT 413
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS + G V + +S Q I
Sbjct: 414 EALVCKHASP-----LSGSVVRISFSQLQNI 439
>gi|297852124|ref|XP_002893943.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339785|gb|EFH70202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 432
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 111/339 (32%), Positives = 184/339 (54%), Gaps = 48/339 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D++ AI+ + ++
Sbjct: 5 SKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAISALQFF- 61
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ +P +RG+ VY+Q+S+ QE+ N D +LLVTI +++DVLH
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLDI 172
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS--G 228
+S +L V + + RSRDYTNP LP SAI A+ G
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPGYGDVGVAYPQMANTSAIAAAFGG 232
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
L G+ G VL++++ ++ D L +FS +G + +I + +N AL+
Sbjct: 233 GLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 287
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 QMGDGFQAELAVHFLKGAVLFGK---RLEVNFSKHPNIT 323
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 113/217 (52%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A SA N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVSSAISALQFF-----------TNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
T+R ++ V+F SH+ + I+ + + G++ EP + +LL
Sbjct: 67 -TIR-----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G
Sbjct: 103 VTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYDG C+L I +S +L + NNDRSRDYT P+ P
Sbjct: 163 IYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+RY P+K++HL LP + TEEE++ + G +VNTK + QA ++F
Sbjct: 347 YRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAIVNTKVFEMNGKKQALVQF 399
>gi|118094291|ref|XP_422322.2| PREDICTED: polypyrimidine tract-binding protein 2 [Gallus gallus]
Length = 531
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 177/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL--------- 124
S+ +R + +Y+QYSN +E+ + T A VL + ++ T+A +
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQATNAPISGTTVSESA 172
Query: 125 -------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSASGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMSHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|156392443|ref|XP_001636058.1| predicted protein [Nematostella vectensis]
gi|156223157|gb|EDO43995.1| predicted protein [Nematostella vectensis]
Length = 470
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 181/375 (48%), Gaps = 80/375 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLHLRN+ E T+ E+I LG P+G+V N G +NQAF+E A+A+++ Y
Sbjct: 1 PSKVLHLRNVAAEATDAEIIALGIPYGRVTNVLMLKG--KNQAFLEMKTKENAMALMNSY 58
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD-----------------------VAGNV 112
S P +RG+ +Y+QYSN QE+ N++ +AG
Sbjct: 59 --SYIPPSIRGRQIYIQYSNHQELTTNESQHSPGVRGLSSSHLGAGIGSLTSGLGIAGE- 115
Query: 113 LLVTIEGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
L ++ G R+ ++I+VL+ +F+ +G V KI F + FQALVQFS + A
Sbjct: 116 -LPSVNGCILRIIVENMLYPITIEVLNQIFTKYGTVLKIVIFTRNNQFQALVQFSQSTEA 174
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 224
+AK +LDG++I G CTLRI YS LSVK+ + ++RDYT P LP S
Sbjct: 175 RAAKCSLDGQNIYN-------GCCTLRIDYSKLKTLSVKYNNDKTRDYTRPDLPSGESTP 227
Query: 225 DASGQLSVGLDGKKL-EPESNVL----------------------------LASIENM-Q 254
D S GL L P + + L + N+ +
Sbjct: 228 DPSALGFAGLGTSVLGSPAALLGFPGLGGLPLANLASLANAAPQRMPMGSPLVLVSNLNE 287
Query: 255 YAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313
++ D L +F +G VQ++ +F+K AL+Q+ +V A A L G ++
Sbjct: 288 EMISCDALFTLFGCYGDVQRVKILFNKKD--TALVQFANVHQAQTAIGHLNGVRVFGK-- 343
Query: 314 CKLHISYSRHTDLSI 328
++ ++ S+HT +S+
Sbjct: 344 -EMKVTNSKHTSVSL 357
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 115 VTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 174
V E TDA ++++ + +G V + + QA ++ E A + N+
Sbjct: 10 VAAEATDAEIIALGI------PYGRVTNVLMLKGKN--QAFLEMKTKENAMALMNSYS-- 59
Query: 175 SIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR--SRDYTNPYLPVAPSAIDASGQLSV 232
Y+ P G + I YS H +L+ H R ++ +L ++ + +
Sbjct: 60 ----YIPPSIRGR-QIYIQYSNHQELTTNESQHSPGVRGLSSSHLGAGIGSLTSG----L 110
Query: 233 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
G+ G+ +L +ENM Y +T++VL+ +F+ +G V KI +F +N QAL+Q+
Sbjct: 111 GIAGELPSVNGCILRIIVENMLYPITIEVLNQIFTKYGTVLKIVIFTRNNQFQALVQFSQ 170
Query: 293 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS--QP 350
A AK +L+G IY+ G C L I YS+ LS+K NND++RDYT P P S P
Sbjct: 171 STEARAAKCSLDGQNIYN-GCCTLRIDYSKLKTLSVKYNNDKTRDYTRPDLPSGESTPDP 229
Query: 351 SILG 354
S LG
Sbjct: 230 SALG 233
>gi|326925087|ref|XP_003208753.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Meleagris
gallopavo]
Length = 531
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 177/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL--------- 124
S+ +R + +Y+QYSN +E+ + T A VL + ++ T+A +
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQATNAPISGTTVSESA 172
Query: 125 -------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMSHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|22329999|ref|NP_175010.2| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|145324166|ref|NP_001077672.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|75323651|sp|Q6ICX4.1|PTBP3_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 3
gi|48525347|gb|AAT44975.1| At1g43190 [Arabidopsis thaliana]
gi|50198952|gb|AAT70479.1| At1g43190 [Arabidopsis thaliana]
gi|110737368|dbj|BAF00629.1| hypothetical protein [Arabidopsis thaliana]
gi|332193840|gb|AEE31961.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|332193841|gb|AEE31962.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
Length = 432
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 184/339 (54%), Gaps = 48/339 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D++ A++ + ++
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF- 61
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ +P +RG+ VY+Q+S+ QE+ N D +LLVTI +++DVLH
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLDI 172
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS--G 228
+S +L V + + RSRDYTNP LP SAI A+ G
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 232
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
L G+ G VL++++ ++ D L +FS +G + +I + +N AL+
Sbjct: 233 GLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 287
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 QMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 127/270 (47%), Gaps = 53/270 (19%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A SA N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
T+R ++ V+F SH+ + I+ + + G++ EP + +LL
Sbjct: 67 -TIR-----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G
Sbjct: 103 VTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQ 367
IYDG C+L I +S +L + NNDRSRDYT P+ P G+ P G T
Sbjct: 163 IYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQK-----GRSSHPCYGDTGVA 216
Query: 368 YNGAQFAPPPPEQPMMHQPTAAGWGAVPPA 397
Y P+ AA G +PP
Sbjct: 217 Y---------PQMANTSAIAAAFGGGLPPG 237
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+RY P+K++HL LP + TEEE++ + G VVNTK + QA ++F
Sbjct: 347 YRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQF 399
>gi|356499519|ref|XP_003518587.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 439
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 179/345 (51%), Gaps = 51/345 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A+ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDIPSAVNALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
A+ +P+ +RG+ VY+Q+S+ QE+ N+ D +LLVT+ ++ DVLH
Sbjct: 62 ANV-QPS-IRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHM-LYPITADVLHQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS GFV KI TF+K+AGFQAL+Q+ ++A +A++ L GR+I G C L I
Sbjct: 119 VFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA-------PSAIDASGQLSVGLDG--------- 236
+S +L V + + RSRD+TNP LP P DA G S G
Sbjct: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGGMHSGARAGGFSQMANAA 231
Query: 237 --------------KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
VL+A++ + + D + +FS +G + +I + +N
Sbjct: 232 AIAAAFGGGLPPGITGTNERCTVLVANLNPDR--IDEDKMFNLFSIYGNIVRIKLL-RNK 288
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
ALIQ D A +A L+G ++ +L ++YS+H +++
Sbjct: 289 PDHALIQMGDGFQAELAVHFLKGAMLFGK---RLEVNYSKHANIT 330
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 115/249 (46%), Gaps = 53/249 (21%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDI---PSAVNALQ--------FYANVQP 66
Query: 188 C----TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243
+ + +S+H +L+ Q+ D EP +
Sbjct: 67 SIRGRNVYVQFSSHQELTTMDQNQARED----------------------------EP-N 97
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
+LL ++ +M Y +T DVLH VFS G V+KI F K+ G QALIQY Q+AV A+ L
Sbjct: 98 RILLVTVHHMLYPITADVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVTARSTL 157
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA 363
+G IYDG C+L I +S +L + NNDRSRD+T P+ P G+ P G
Sbjct: 158 QGRNIYDGC-CQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQK-----GRSSQPGYGD 211
Query: 364 TANQYNGAQ 372
++GA+
Sbjct: 212 AGGMHSGAR 220
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL LP + TEEE++ L + G +VN+K + QA ++F QA
Sbjct: 354 YRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQAT 413
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS + G V + +S Q I
Sbjct: 414 EALVCKHASP-----LSGSVVRISFSQLQNI 439
>gi|328867981|gb|EGG16362.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 656
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 137/232 (59%), Gaps = 19/232 (8%)
Query: 5 SSQPQFRYTQP-PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
S + + T P PSKV+HLRNLP +CTE E++ + PFG+V + G ++Q FI+F
Sbjct: 235 SKAKKLKNTTPQPSKVIHLRNLPIDCTEHEIMAIAAPFGQVDHILILKG--KSQGFIQFL 292
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
+L A + I +Y + +R K ++QYSNR+EI + + + N+LLVTI
Sbjct: 293 ELTSASSFIQFYTTIQ--GCIRAKNFFVQYSNREEITST-SAVETPNNILLVTISNI-VY 348
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V+I+VL+ +F +G V KI F K+ FQ+LVQ E+A AK LDG+SI
Sbjct: 349 PVTIEVLYQLFGKYGSVLKILIFSKSGNFQSLVQLHSLESAIQAKRELDGQSIYS----- 403
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA-PSAI----DASGQL 230
G CT++I YS+ ++L +K+ + +SRD+TNP L PS I +++GQL
Sbjct: 404 --GCCTMKIQYSSLSNLRIKYNNDKSRDFTNPTLMSGIPSTIGFGNNSAGQL 453
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 77/116 (66%), Gaps = 3/116 (2%)
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
+E +N+LL +I N+ Y VT++VL+ +F +G V KI +F K+G Q+L+Q +++A+
Sbjct: 332 VETPNNILLVTISNIVYPVTIEVLYQLFGKYGSVLKILIFSKSGNFQSLVQLHSLESAIQ 391
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
AK L+G IY G C + I YS ++L IK NND+SRD+T P+ +++ PS +G
Sbjct: 392 AKRELDGQSIYSGC-CTMKIQYSSLSNLRIKYNNDKSRDFTNPT--LMSGIPSTIG 444
>gi|300681487|emb|CBH32581.1| RNA recognition domain containing protein [Triticum aestivum]
Length = 277
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 132/209 (63%), Gaps = 18/209 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+ E +E +L+++ +PFG V K + +NQA ++ DL+ +I+ I YY
Sbjct: 4 PSRVIHIRNVGHEISETDLLQVVQPFGAVA--KLVMLRTKNQALVQMEDLSASISAIQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVAGNVLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ VYLQYS+ QE+ ++++ D +LLVT+ + +++V
Sbjct: 62 -TTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQDEPNRILLVTVHHMLYPM-TVEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS +GFV KI TF+KTAGFQAL+QF ++A A AL GR+I G C
Sbjct: 119 LHQVFSPYGFVEKIVTFQKTAGFQALIQFQSRQSAIQAAGALHGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 LDIQYSNLSELQVHYNNDRSRDFTNPSLP 200
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 95/170 (55%), Gaps = 16/170 (9%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N YL + + Q S G + + EP + +LL ++ +M Y +T++VLH VFS +G V+
Sbjct: 72 NVYLQYSSHQELTTDQSSHGRNPDQDEP-NRILLVTVHHMLYPMTVEVLHQVFSPYGFVE 130
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K G QALIQ+ Q+A+ A AL G IYDG C+L I YS ++L + NND
Sbjct: 131 KIVTFQKTAGFQALIQFQSRQSAIQAAGALHGRNIYDGC-CQLDIQYSNLSELQVHYNND 189
Query: 334 RSRDYTLPSTP---------MVNSQPSILG-QQPVPMVGATANQYNGAQF 373
RSRD+T PS P + + PS+ G QQP G A Q++ F
Sbjct: 190 RSRDFTNPSLPTEQRPRSSQLGYNDPSLFGFQQP----GGKALQFSFTFF 235
>gi|348550212|ref|XP_003460926.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Cavia porcellus]
Length = 531
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 192/387 (49%), Gaps = 91/387 (23%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSTGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY +S P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYY--TSVPPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K + FQAL+
Sbjct: 168 AAAVDAGLAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LP--------------------------VAPSAI-------DASGQLSV-GLDGKKLEPE 242
LP +AP AI A+G++ + GL G
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIGIPGLAGAG---- 335
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKE 301
++VLL S N + VT L ++F +G VQ++ +F+K AL+Q D A +A
Sbjct: 336 NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMS 392
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSI 328
L GH ++ + I+ S+H ++ +
Sbjct: 393 HLNGHKLHGK---PIRITLSKHQNVQL 416
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GLAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|449508136|ref|XP_002190438.2| PREDICTED: polypyrimidine tract-binding protein 2 [Taeniopygia
guttata]
Length = 537
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 179/383 (46%), Gaps = 87/383 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL--------- 124
S+ +R + +Y+QYSN +E+ + T A VL + ++ ++A +
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQASNAPISGTTVSESA 172
Query: 125 -------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
V++DVLH +FS FG V KI TF K FQAL+QF D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQFGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKQALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPT 285
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 286 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 345
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 346 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMSHLNG 402
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
+Y G + ++ S+H + +
Sbjct: 403 QKMY-GKIIR--VTLSKHQSVQL 422
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+Q+ D A AK+
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQFGDPVNAQQAKQ 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPTL 286
>gi|209362272|gb|ACI43571.1| RBP50 [Cucurbita maxima]
Length = 445
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/351 (32%), Positives = 183/351 (52%), Gaps = 57/351 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA I+ D+ A+ + ++
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVNALQFF 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
A+ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 62 ANV-QPS-IRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VF GFV KI TF+K+AGFQAL+Q+ + A SA+ AL GR+I G C L
Sbjct: 119 QVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS----------------AIDASGQLSVGLD 235
I +S +L V + + RSRD+TNP LP P A+ ASG VG
Sbjct: 172 IQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRPSQQPGYGDAGGMYALQASGAGPVGFP 231
Query: 236 ------------GKKLEP-------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
G L P VL++++ + + D L +FS +G + +I
Sbjct: 232 QMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIARIK 289
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 290 LL-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 336
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 111/217 (51%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALIQMQDV---PSAVNALQ--------FFANVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++R ++ V+F SH+ + D + Q G+ EP + +LL
Sbjct: 67 -SIR-----GRNVYVQFSSHQEL-----------TTADQNAQ------GRGDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T++VLH VF G V+KI F K+ G QALIQY Q A+ A+ AL+G
Sbjct: 103 VTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYDG C+L I +S +L + NN+RSRD+T PS P
Sbjct: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPSLP 198
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +L E TEEE++ L + G ++NTK + QA I F QA
Sbjct: 360 YRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQAT 419
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +ASS + G + + +S Q I
Sbjct: 420 EALVCKHASS-----LSGSIIRISFSQLQSI 445
>gi|115464105|ref|NP_001055652.1| Os05g0437300 [Oryza sativa Japonica Group]
gi|113579203|dbj|BAF17566.1| Os05g0437300 [Oryza sativa Japonica Group]
gi|215734982|dbj|BAG95704.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196864|gb|EEC79291.1| hypothetical protein OsI_20097 [Oryza sativa Indica Group]
gi|222631716|gb|EEE63848.1| hypothetical protein OsJ_18672 [Oryza sativa Japonica Group]
Length = 444
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 189/370 (51%), Gaps = 57/370 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ DL+ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAEADLLQLLQPFGNV--SKIVMLRAKNQALLQMQDLHNSVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
S+ +P+ VRG+ VY+Q+S+ QE+ ++ + + +LLVTI ++++
Sbjct: 62 -STVQPS-VRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHM-MYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+G+V KI TF+K+AGFQAL+Q+ + A A AL GR+I G C
Sbjct: 119 VLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA------------PSAIDASGQ------- 229
L I YS ++L V + + RSRD+TNP LP P + A Q
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYPDPGGLYAFQQPGASYAQ 231
Query: 230 -----LSVGLDGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
+ G L P E L+ S N + D L +FS +G + +I +
Sbjct: 232 MGRAAMITAAFGGTLPPGVTGTNERCTLIVSNLNTD-KINEDKLFNLFSLYGNIVRIKIL 290
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
+N AL++ D A +A L+G ++ KL ++YS++ +++ + + DY
Sbjct: 291 -RNKPDHALVEMADGFQAELAVHYLKGAVLFAK---KLEVNYSKYPNITSAPD---AHDY 343
Query: 339 TLPSTPMVNS 348
T S NS
Sbjct: 344 TTSSLNRFNS 353
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 135/292 (46%), Gaps = 59/292 (20%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D + SA
Sbjct: 7 VIHIRNVGHEIAEADLLQLL-QPFGNVSKIVMLR--AKNQALLQMQDLHNSVSALQYYST 63
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH-RSRDYTNPYLPVAPSAID 225
++ GR++ + +S+H +L+ SH R+ D
Sbjct: 64 VQPSVRGRNV--------------YMQFSSHQELTTDQNSHGRNSD-------------- 95
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
++ EP + +LL +I +M Y +T++VLH VF A+G V+KI F K+ G Q
Sbjct: 96 -----------QESEP-NRILLVTIHHMMYPITVEVLHQVFKAYGYVEKIVTFQKSAGFQ 143
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
ALIQY +Q A+ A AL G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 144 ALIQYQSLQEAMDAFGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP- 201
Query: 346 VNSQPSILGQQPVPMVGAT-ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
Q QQ P G A Q GA +A + TAA G +PP
Sbjct: 202 -TEQRPRASQQGYPDPGGLYAFQQPGASYA----QMGRAAMITAAFGGTLPP 248
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E TE+ ++ G VVNTK + QA I+F +A
Sbjct: 359 YRHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEAT 418
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +A+S E G T+ + +S Q I
Sbjct: 419 EALVSKHATSLE-----GNTIRISFSQMQSI 444
>gi|348540154|ref|XP_003457553.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oreochromis
niloticus]
Length = 511
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 127/367 (34%), Positives = 178/367 (48%), Gaps = 72/367 (19%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS+V+H+R LP E +E E+I LG PFGKV N G +NQAF+E A+ M++Y
Sbjct: 50 PPSRVIHIRKLPNEASEAEVIALGLPFGKVTNILTLKG--KNQAFLEMGTEEAAVTMVNY 107
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI----VNNKT--------------------TADVAG 110
Y S P +R V++QYSN +E+ N +T A V+
Sbjct: 108 Y-SKVTPL-IRNIQVFIQYSNHKELKTDAANQRTQAVLQAVSAAQSPGSEVQEVLAAVSS 165
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
VL + I+ V++DVL +FS FG V KI TF K FQAL+QFSD +A AK A
Sbjct: 166 PVLRIIIDNM-FYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVSAQQAKLA 224
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA---PS----- 222
LDG++I CTLRI +S +L+VK+ + +SRDYT P LP PS
Sbjct: 225 LDGQNIYN-------SCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPSFDPTV 277
Query: 223 ----AIDASGQLS-----------------VGLDGKKLEPESNVLLASIENMQYAVTLDV 261
+ D+S L V L G+ S VLL S N + VT
Sbjct: 278 AVAFSKDSSSLLGALNPLSAAAAAAAAAGRVALTGQ--TGSSGVLLVSNLN-EEMVTPQS 334
Query: 262 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321
L +F +G VQ++ + N ALIQ + A +A L G +Y G + ++ S
Sbjct: 335 LFTLFGVYGDVQRVKIL-YNKKDSALIQMSESNQAQLAMSHLNGQKMY-GKIIR--VTLS 390
Query: 322 RHTDLSI 328
+H +++
Sbjct: 391 KHQTVAL 397
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL I+NM Y VTLDVL +FS FG V KI F KN QAL+Q+ D +A AK AL+
Sbjct: 167 VLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVSAQQAKLALD 226
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
G IY+ C L I +S+ +L++K NND+SRDYT P P + QPS
Sbjct: 227 GQNIYNSC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPSF 273
>gi|321470924|gb|EFX81898.1| hypothetical protein DAPPUDRAFT_302853 [Daphnia pulex]
Length = 540
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 136/251 (54%), Gaps = 50/251 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + TE E++ LG PFG+V N G +NQAF+E AD AI+M++Y+
Sbjct: 33 PSRVVHIRNIPNDVTEAEIVHLGIPFGRVTNVLVLKG--KNQAFLEMADEGAAISMVNYF 90
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL-----VTIEG----------- 119
SS AQ+RG+ V++QYSN + +++ ++ + L V+I+G
Sbjct: 91 -SSGTSAQLRGRNVFVQYSNHVALKTDQSHSNAVRFINLFFEFSVSIDGSFSAAAQAALQ 149
Query: 120 ----------------TDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155
T R+ V++DVL +FS G V KI TF K FQAL
Sbjct: 150 AAQALAGQTETQGGPNTVLRVIVEHMVYPVTLDVLFQIFSKVGRVLKIVTFTKNNTFQAL 209
Query: 156 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
+Q+ D TA +AK LDG++I CTLRI YS + L+VK+ + +SRDYTNP
Sbjct: 210 IQYPDVVTAQAAKLTLDGQNIYN-------SCCTLRIEYSKLSSLNVKYNNDKSRDYTNP 262
Query: 216 YLPVAPSAIDA 226
LP +DA
Sbjct: 263 TLPTGDHNLDA 273
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E+M Y VTLDVL +FS G V KI F KN QALIQYPDV TA AK L+
Sbjct: 167 VLRVIVEHMVYPVTLDVLFQIFSKVGRVLKIVTFTKNNTFQALIQYPDVVTAQAAKLTLD 226
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 227 GQNIYNSC-CTLRIEYSKLSSLNVKYNNDKSRDYTNPTLP 265
>gi|327270713|ref|XP_003220133.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Anolis
carolinensis]
Length = 531
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 174/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL I GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTTNTPISGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + VLL S
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLGIPNAAAAAAAAAAGRVGMPGVS-SGGNTVLLVSN 344
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
N + VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 345 LN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMSHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|170042024|ref|XP_001848742.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
gi|167865565|gb|EDS28948.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
Length = 572
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 139/264 (52%), Gaps = 51/264 (19%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R T PS+V+H+RN+P E +E +++ LG PFG+V N G +NQAF+E AD + A
Sbjct: 16 YRSTSKPSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKG--KNQAFLEMADESAAT 73
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK------------------------TT 105
+M++ + ++ P VRG+TVY+Q+SN +E+ ++ T
Sbjct: 74 SMVTMFTAT--PPIVRGRTVYVQFSNHRELKTDQNHTATDLTQSPTGSPLPLALDHANTN 131
Query: 106 ADVAG------------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQ 153
+ AG N +L I + VS+D+L+ +F FG V KI TF K FQ
Sbjct: 132 STTAGTGANVGGNAGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQ 191
Query: 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
AL+Q+ D TA AK LDG++I G CTLRI S T L+VK+ + +SRDYT
Sbjct: 192 ALIQYPDATTAQHAKQTLDGQNIYN-------GCCTLRIDNSKLTSLNVKYNNDKSRDYT 244
Query: 214 NPYLPVAPSAID----ASGQLSVG 233
NP LP D A G +S G
Sbjct: 245 NPTLPSGEPGSDVIASAGGLVSAG 268
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
+DV+HL FG V + + QA ++ +D A+S P +
Sbjct: 38 VDVMHLGV-PFGRVTNVLVLKGKN--QAFLEMADESAATSMVTMFTA-------TPPIVR 87
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYT-NPYLPVAPSAIDASGQLSVGLDGKKLEPE--- 242
T+ + +S H +L Q+H + D T +P P A+D + S
Sbjct: 88 GRTVYVQFSNHRELKTD-QNHTATDLTQSPTGSPLPLALDHANTNSTTAGTGANVGGNAG 146
Query: 243 --SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+ VL +E++ Y V+LD+L+ +F FG V KI F KN QALIQYPD TA AK
Sbjct: 147 GPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDATTAQHAK 206
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+ L+G IY+ G C L I S+ T L++K NND+SRDYT P+ P
Sbjct: 207 QTLDGQNIYN-GCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLP 249
>gi|293335567|ref|NP_001169470.1| uncharacterized protein LOC100383343 [Zea mays]
gi|224029557|gb|ACN33854.1| unknown [Zea mays]
Length = 444
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 182/352 (51%), Gaps = 60/352 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ DL+ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGMV--SKIVMLRAKNQALLQMEDLHASVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 62 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQGSEPNRILLVTIHHM-IYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
+LH VF A+GFV KI TF+K+AGFQAL+Q+ + A A +L GR+I G C
Sbjct: 119 ILHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLP------------------------------ 218
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDPANLYAFQQAGASYAQ 231
Query: 219 ---VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
VA A G L G+ G E L+ S N + D L +FS +G + +I
Sbjct: 232 MGRVAMIAAAFGGTLPHGVTGTN---ERCTLIVSNLNTD-KIDEDKLFNLFSLYGNIVRI 287
Query: 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 288 KIL-RNKPDHALVEMADGLQAELAVHYLKGSILFGK---KLEVNYSKYPNIT 335
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 50/238 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D + SA
Sbjct: 7 VIHIRNVGHEIAESDLLQLL-QPFGMVSKIVMLR--AKNQALLQMEDLHASVSALQYYTS 63
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
++ GR++ + +S+H +L+ SH
Sbjct: 64 VQPSIRGRNV--------------YMQFSSHQELTTDQSSH------------------- 90
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + +LL +I +M Y +T+++LH VF A+G V+KI F K+ G QA
Sbjct: 91 ------GRNSDQGSEPNRILLVTIHHMIYPITVEILHQVFKAYGFVEKIVTFQKSAGFQA 144
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LIQY Q AV A +L G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 145 LIQYHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 201
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP + +EE ++ G V+NTK + QA I F +A
Sbjct: 359 YRHCCSPTKMIHISALPQDISEEAILNHVSEHGTVLNTKLFEVNGKRQALILFKSEEEAT 418
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 419 EALVSKHASTLE-----GNTIRISFSQMQSI 444
>gi|413949171|gb|AFW81820.1| hypothetical protein ZEAMMB73_476847 [Zea mays]
Length = 529
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 181/352 (51%), Gaps = 60/352 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ DL+ +++ + YY
Sbjct: 89 PSKVIHIRNVGHEIAESDLLQLLQPFGMV--SKIVMLRAKNQALLQMEDLHASVSALQYY 146
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT-------ADVAGNVLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ +LLVTI ++++
Sbjct: 147 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQGSEPNRILLVTIHHM-IYPITVE 203
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
+LH VF A+GFV KI TF+K+AGFQAL+Q+ + A A +L GR+I G C
Sbjct: 204 ILHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYD-------GCC 256
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLP------------------------------ 218
L I YS ++L V + + RSRD+TNP LP
Sbjct: 257 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQGYLDPANLYAFQQAGASYAQ 316
Query: 219 ---VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
VA A G L G+ G E L+ S N + D L +FS +G + +I
Sbjct: 317 MGRVAMIAAAFGGTLPHGVTGTN---ERCTLIVSNLNTD-KIDEDKLFNLFSLYGNIVRI 372
Query: 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 373 KIL-RNKPDHALVEMADGLQAELAVHYLKGSILFGK---KLEVNYSKYPNIT 420
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 50/238 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D + SA
Sbjct: 92 VIHIRNVGHEIAESDLLQLL-QPFGMVSKIVMLR--AKNQALLQMEDLHASVSALQYYTS 148
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
++ GR++ + +S+H +L+ SH
Sbjct: 149 VQPSIRGRNV--------------YMQFSSHQELTTDQSSH------------------- 175
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + +LL +I +M Y +T+++LH VF A+G V+KI F K+ G QA
Sbjct: 176 ------GRNSDQGSEPNRILLVTIHHMIYPITVEILHQVFKAYGFVEKIVTFQKSAGFQA 229
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LIQY Q AV A +L G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 230 LIQYHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 286
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP + +EE ++ G V+NTK + QA I F +A
Sbjct: 444 YRHCCSPTKMIHISALPQDISEEAILNHVSEHGTVLNTKLFEVNGKRQALILFKSEEEAT 503
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 504 EALVSKHASTLE-----GNTIRISFSQMQSI 529
>gi|345306392|ref|XP_001508115.2| PREDICTED: polypyrimidine tract-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 606
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 174/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 131 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 188
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + VY+QYSN +E+ + T A VL + GT
Sbjct: 189 SAVT--PHLRNQPVYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 246
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 247 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 306
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA----- 220
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 307 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 359
Query: 221 ------------PSAIDASGQLS------------------VGLDGKKLEPESNVLLASI 250
S + G LS VGL G + +L++++
Sbjct: 360 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGLPGVSAGGNTVLLVSNL 419
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 420 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 475
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 476 GKIIR--VTLSKH 486
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 251 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 310
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 311 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 360
>gi|73959499|ref|XP_866820.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4 [Canis
lupus familiaris]
gi|119593416|gb|EAW73010.1| polypyrimidine tract binding protein 2, isoform CRA_f [Homo
sapiens]
Length = 480
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 5 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 62
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 63 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 120
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 121 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 180
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 181 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 233
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 234 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 293
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 294 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 349
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 350 GKIIR--VTLSKH 360
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 125 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 184
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 185 ALDGQNIYNAC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 234
>gi|348586487|ref|XP_003479000.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cavia
porcellus]
Length = 581
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 174/369 (47%), Gaps = 80/369 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 106 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 163
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 164 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 221
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 222 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 281
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 282 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 334
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 335 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 394
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 395 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 450
Query: 311 GGFCKLHIS 319
G ++ +S
Sbjct: 451 GKIIRVTLS 459
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 226 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 285
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 286 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 335
>gi|359493143|ref|XP_002264763.2| PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform 2
[Vitis vinifera]
Length = 432
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 185/340 (54%), Gaps = 48/340 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAANAMQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
++ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 62 -TNVQPS-IRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHL-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV KI TF+K+AGFQAL+Q+ ++A +A+N+L GR+I G C L
Sbjct: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS-- 227
I +S +L V + + RSRD+TNP LP SAI A+
Sbjct: 172 IQFSNLDELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGVGFPQMPNASAIAAAFG 231
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G L G+ G VL++++ + + D L +FS +G + +I + +N AL
Sbjct: 232 GGLPPGISGTN--DRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVRIKLL-RNKPDHAL 286
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+Q D A +A L+G ++ +L +++S++++++
Sbjct: 287 VQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKYSNIT 323
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A++A N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAANAMQ-----------FYTNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++R ++ V+F SH+ + +D + Q G+ EP + +LL
Sbjct: 67 -SIR-----GRNVYVQFSSHQE-----------LTTVDQNAQ------GRGDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A+ +L+G
Sbjct: 103 VTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYDG C+L I +S +L + NN+RSRD+T PS P
Sbjct: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPSLP 198
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ L + TEEE++ + G +VNTK + QA + F + QA
Sbjct: 347 YRYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQAT 406
Query: 70 -AMISYYAS 77
A++ +A+
Sbjct: 407 EALVCKHAT 415
>gi|354504008|ref|XP_003514071.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Cricetulus
griseus]
Length = 501
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 84 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 141
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 142 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 201
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 202 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 254
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 255 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 314
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 315 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 370
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 371 GKIIR--VTLSKH 381
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 206 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 255
>gi|410967802|ref|XP_003990404.1| PREDICTED: polypyrimidine tract-binding protein 2 [Felis catus]
Length = 566
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 91 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 148
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 149 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 206
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 207 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 266
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 267 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 319
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 320 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 379
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 380 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMYG 436
Query: 311 GGFCKLHISYSRH 323
+ ++ S+H
Sbjct: 437 K---IIRVTLSKH 446
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 211 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 270
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 271 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 320
>gi|242090663|ref|XP_002441164.1| hypothetical protein SORBIDRAFT_09g021560 [Sorghum bicolor]
gi|241946449|gb|EES19594.1| hypothetical protein SORBIDRAFT_09g021560 [Sorghum bicolor]
Length = 444
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 181/352 (51%), Gaps = 60/352 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ D++ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGVV--SKIVMLRAKNQALLQMEDIHASVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 62 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHM-IYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I G C
Sbjct: 119 VLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPV----------------------------- 219
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRAPQQGYPDPANLYAFQQAGASFAQ 231
Query: 220 ----APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
A A G L G+ G E L+ S N + D L +FS +G + +I
Sbjct: 232 MGRAAMIAAAFGGSLPHGVTGAN---ERCTLIVSNLNTD-KIDEDKLFNLFSLYGNIVRI 287
Query: 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 288 KIL-RNKPDHALVEMADGLQAELAVHYLKGAILFGK---KLEVNYSKYPNIT 335
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 52/239 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D + SA
Sbjct: 7 VIHIRNVGHEIAESDLLQLL-QPFGVVSKIVMLR--AKNQALLQMEDIHASVSALQYYTS 63
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH-RSRDYTNPYLPVAPSAID 225
++ GR++ + +S+H +L+ SH R+ D
Sbjct: 64 VQPSIRGRNV--------------YMQFSSHQELTTDQSSHGRNSD-------------- 95
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
++ EP + +LL +I +M Y +T++VLH VF A+G V+KI F K+ G Q
Sbjct: 96 -----------QESEP-NRILLVTIHHMIYPITVEVLHQVFKAYGFVEKIVTFQKSAGFQ 143
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
ALIQ+ Q AV A +L G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 144 ALIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 201
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF-ADLNQA 68
+R+ P+K++H+ LP E +EE ++ G V+NTK + QA + F +
Sbjct: 359 YRHCCSPTKMIHISALPQEISEEAILNHVSEHGNVLNTKLFEVNGKRQALVLFETEEEAT 418
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 419 EALVSKHASTLE-----GNTIRISFSQMQSI 444
>gi|357126039|ref|XP_003564696.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Brachypodium distachyon]
Length = 443
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 18/209 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+ E +E +L+++ +PFG V K + +NQA ++ DL +++ I YY
Sbjct: 4 PSRVIHIRNVGHEISESDLLQVVQPFGTV--AKLVMLRAKNQALVQMEDLAASVSAIQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVAGNVLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ VYLQYS+ QE+ ++++ D +LLVT+ ++++V
Sbjct: 62 -TTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQDEPNRILLVTVHHM-LYPMTVEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS +GFV KI TF+KTAGFQAL+Q+ ++A A AL GR+I G C
Sbjct: 119 LHQVFSPYGFVEKIVTFQKTAGFQALIQYQSRQSAIQACGALHGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 LDIQYSNLSELQVHYNNDRSRDFTNPSLP 200
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 115/240 (47%), Gaps = 41/240 (17%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
++ I + D+L +V FG V K+ A QALVQ D + SA
Sbjct: 7 VIHIRNVGHEISESDLLQVV-QPFGTVAKLVMLR--AKNQALVQMEDLAASVSA------ 57
Query: 174 RSIPRY--LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
I Y + P G + + YS+H +L+ SH
Sbjct: 58 --IQYYTTIQPSVRGR-NVYLQYSSHQELTTDQSSH------------------------ 90
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + + EP + +LL ++ +M Y +T++VLH VFS +G V+KI F K G QALIQY
Sbjct: 91 -GRNPDQDEP-NRILLVTVHHMLYPMTVEVLHQVFSPYGFVEKIVTFQKTAGFQALIQYQ 148
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
Q+A+ A AL G IYD G C+L I YS ++L + NNDRSRD+T PS P Q S
Sbjct: 149 SRQSAIQACGALHGRNIYD-GCCQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRQRS 207
>gi|53850638|ref|NP_001005555.1| polypyrimidine tract-binding protein 2 [Rattus norvegicus]
gi|81910658|sp|Q66H20.1|PTBP2_RAT RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=PTB-like protein
gi|93140675|sp|Q91Z31.2|PTBP2_MOUSE RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Brain-enriched polypyrimidine tract-binding
protein; Short=Brain-enriched PTB; AltName: Full=Neural
polypyrimidine tract-binding protein; AltName:
Full=RRM-type RNA-binding protein brPTB
gi|51859313|gb|AAH82076.1| Polypyrimidine tract binding protein 2 [Rattus norvegicus]
gi|149025819|gb|EDL82062.1| polypyrimidine tract binding protein 2, isoform CRA_b [Rattus
norvegicus]
Length = 531
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|148680405|gb|EDL12352.1| polypyrimidine tract binding protein 2, isoform CRA_b [Mus
musculus]
Length = 529
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 112 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 169
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 170 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 229
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 230 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 282
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 283 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 342
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 343 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 398
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 399 GKIIR--VTLSKH 409
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 123 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 175
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 176 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 235
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 236 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 283
>gi|16580749|dbj|BAB71742.1| PTB-like protein L [Homo sapiens]
gi|16741546|gb|AAH16582.1| Polypyrimidine tract binding protein 2 [Homo sapiens]
gi|119593413|gb|EAW73007.1| polypyrimidine tract binding protein 2, isoform CRA_c [Homo
sapiens]
gi|123980248|gb|ABM81953.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|157928112|gb|ABW03352.1| polypyrimidine tract binding protein 2 [synthetic construct]
gi|410216174|gb|JAA05306.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
gi|410328831|gb|JAA33362.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 532
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|395821711|ref|XP_003784180.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Otolemur garnettii]
Length = 531
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTASTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|148680404|gb|EDL12351.1| polypyrimidine tract binding protein 2, isoform CRA_a [Mus
musculus]
Length = 528
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 112 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 169
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 170 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 229
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 230 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 282
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 283 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 342
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 343 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 398
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 399 GKIIR--VTLSKH 409
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 123 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 175
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 176 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 235
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 236 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 283
>gi|9507003|ref|NP_062423.1| polypyrimidine tract-binding protein 2 [Mus musculus]
gi|8358154|gb|AAF21807.2|AF095718_1 RRM-type RNA-binding protein brPTB [Mus musculus]
gi|5824110|emb|CAB54073.1| PTB-like protein [Rattus rattus]
gi|22711857|tpg|DAA00061.1| TPA_exp: splicing regulator nPTB2 [Mus musculus]
gi|74209570|dbj|BAE23317.1| unnamed protein product [Mus musculus]
Length = 532
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|10863997|ref|NP_067013.1| polypyrimidine tract-binding protein 2 [Homo sapiens]
gi|332221969|ref|XP_003260137.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Nomascus leucogenys]
gi|332809589|ref|XP_001157727.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
troglodytes]
gi|345801645|ref|XP_547270.3| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Canis
lupus familiaris]
gi|397474047|ref|XP_003808502.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pan
paniscus]
gi|426330454|ref|XP_004026226.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Gorilla gorilla gorilla]
gi|74761983|sp|Q9UKA9.1|PTBP2_HUMAN RecName: Full=Polypyrimidine tract-binding protein 2; AltName:
Full=Neural polypyrimidine tract-binding protein;
AltName: Full=Neurally-enriched homolog of PTB; AltName:
Full=PTB-like protein
gi|6492336|gb|AAF14284.1|AF176085_1 neural polypyrimidine tract binding protein [Homo sapiens]
gi|22711855|tpg|DAA00060.1| TPA_exp: splicing regulator nPTB1 [Homo sapiens]
gi|119593411|gb|EAW73005.1| polypyrimidine tract binding protein 2, isoform CRA_a [Homo
sapiens]
gi|380815182|gb|AFE79465.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|384948520|gb|AFI37865.1| polypyrimidine tract-binding protein 2 [Macaca mulatta]
gi|410298260|gb|JAA27730.1| polypyrimidine tract binding protein 2 [Pan troglodytes]
Length = 531
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|25392158|pir||JC7526 polypyrimidine tract-binding protein-like protein - rat
Length = 532
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|395821709|ref|XP_003784179.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1
[Otolemur garnettii]
Length = 540
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 122
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 123 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTASTPLSGTTVSESA 180
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 181 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 240
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 241 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 293
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 294 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 353
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 354 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 409
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 410 GKIIR--VTLSKH 420
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 245 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 294
>gi|355745467|gb|EHH50092.1| hypothetical protein EGM_00861, partial [Macaca fascicularis]
Length = 529
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 112 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 169
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 170 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 229
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 230 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 282
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 283 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 342
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 343 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 398
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 399 GKIIR--VTLSKH 409
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 174 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 233
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 234 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 283
>gi|297279326|ref|XP_001105013.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 2
[Macaca mulatta]
gi|332809591|ref|XP_001158089.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 7 [Pan
troglodytes]
gi|395730217|ref|XP_003775687.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pongo
abelii]
gi|397474049|ref|XP_003808503.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Pan
paniscus]
gi|426330456|ref|XP_004026227.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 540
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 122
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 123 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 180
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 181 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 240
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 241 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 293
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 294 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 353
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 354 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 409
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 410 GKIIR--VTLSKH 420
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 245 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 294
>gi|345801647|ref|XP_003434832.1| PREDICTED: polypyrimidine tract-binding protein 2 [Canis lupus
familiaris]
Length = 540
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 122
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 123 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 180
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 181 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 240
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 241 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 293
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 294 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 353
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 354 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 409
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 410 GKIIR--VTLSKH 420
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 245 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 294
>gi|334702287|gb|AEG89703.1| polypyrimidine tract-binding protein 1 [Solanum tuberosum]
Length = 441
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 130/207 (62%), Gaps = 16/207 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A+ + +Y
Sbjct: 4 PSKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAVKALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
S+ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI +++DVLH
Sbjct: 62 -SNVQPS-IRGRNVYVQFSSHQELTTMDQNAQGRGDEPNRILLVTIHHM-LYPITVDVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV KI TF+K+AGFQAL+Q+ +++ SA+N+L GR+I G C L
Sbjct: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQVQQSSVSARNSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLP 218
I +S +L V + + RSRDYTNP LP
Sbjct: 172 IQFSNLDELQVNYNNERSRDYTNPNLP 198
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 53/224 (23%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA-------SSAKNALDGRSIPRYL 180
D+L L F FG + K+ A QAL+Q D +A S+ + ++ GR++
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAVKALQFYSNVQPSIRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ +D + Q G+ E
Sbjct: 74 ----------YVQFSSHQELT---------------------TMDQNAQ------GRGDE 96
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL +I +M Y +T+DVLH VFS G V+KI F K+ G QALIQY Q++V A+
Sbjct: 97 P-NRILLVTIHHMLYPITVDVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQVQQSSVSAR 155
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+L+G IYDG C+L I +S +L + NN+RSRDYT P+ P
Sbjct: 156 NSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDYTNPNLP 198
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL +LP + TE E+I + G ++N+K + QA + F QA
Sbjct: 356 YRYCCSPTKMIHLSSLPQDVTEAEIIAHLEEHGPIINSKLFEMNGKQQALVLFDKEEQAT 415
Query: 70 -AMISYYASSSEPAQVR 85
A++ A+S + +R
Sbjct: 416 EALVCKNATSLGSSTIR 432
>gi|403283993|ref|XP_003933374.1| PREDICTED: polypyrimidine tract-binding protein 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 173/369 (46%), Gaps = 80/369 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 102 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 159
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 160 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 217
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 218 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 277
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 278 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 330
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 331 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 390
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 391 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 446
Query: 311 GGFCKLHIS 319
G ++ +S
Sbjct: 447 GKIIRVTLS 455
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 222 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 281
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 282 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 331
>gi|357443609|ref|XP_003592082.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355481130|gb|AES62333.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|388492616|gb|AFK34374.1| unknown [Medicago truncatula]
Length = 443
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 182/348 (52%), Gaps = 53/348 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA I+ D+ A++ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVSALHFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ +P+ +RG+ VY+Q+S+ QE+ ++ D +LLVTI +++DVL+
Sbjct: 62 GNT-QPS-IRGRNVYVQFSSHQELTTIDQSQGRGDEPNRILLVTIHHV-LYPITVDVLYQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS G V KI TF+K+AGFQAL+Q+ +++ +A+ AL GR+I G C L I
Sbjct: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTALQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPS---------------AIDASGQLSVGLD-- 235
+S +L V + + RSRD+TNP LP + SG +VG
Sbjct: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYGDAGNMYGVQGSGPRTVGYPQM 231
Query: 236 ----------GKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
G L P + LL S N + D L +FS +G + +I +
Sbjct: 232 PNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPD-RIDEDKLFNLFSLYGNIVRIKLL- 289
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+N ALIQ D A +A L+G ++D +L +++S+H +++
Sbjct: 290 RNKPDHALIQMGDGFQAELAVHFLKGAMLFDK---RLEVNFSKHPNIT 334
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 130/281 (46%), Gaps = 64/281 (22%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN-------ALDGRSIPRYL 180
D+L L F FG + K+ A QAL+Q D +A SA + ++ GR++
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALIQMQDVPSAVSALHFYGNTQPSIRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ QS G+ E
Sbjct: 74 ----------YVQFSSHQELTTIDQSQ----------------------------GRGDE 95
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL +I ++ Y +T+DVL+ VFS G V+KI F K+ G QALIQY Q+++ A+
Sbjct: 96 P-NRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITAR 154
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
AL+G IYD G C+L I +S +L + NNDRSRD+T P+ P G+ P
Sbjct: 155 TALQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQK-----GRPPQLG 208
Query: 361 VGATANQYNGAQFAPPP----PEQPMMHQPTAAGWGAVPPA 397
G N Y G Q + P P+ P AA G +PP
Sbjct: 209 YGDAGNMY-GVQGSGPRTVGYPQMPNAAAIAAAFGGGLPPG 248
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL LP + TE+E++ L + G +VN+K + Q ++F +QA
Sbjct: 358 YRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQAT 417
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +A+S + G + + YS Q I
Sbjct: 418 EALVCKHATS-----LSGSVIRISYSQLQNI 443
>gi|449503770|ref|XP_004162168.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Cucumis sativus]
Length = 432
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 179/340 (52%), Gaps = 48/340 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A+ + ++
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALMQMQDVPSAVNALQFF 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
A+ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 62 ANL-QPS-IRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VF GFV KI TF+K+AGFQAL+Q+ + A SA+ AL GR+I G C L
Sbjct: 119 QVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA------------------------S 227
I +S +L V + + RSRD+TNP LP P +
Sbjct: 172 IQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYPQMANAAAVAAAFG 231
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G L G+ G VL++++ + + D L +FS +G + +I + +N AL
Sbjct: 232 GGLPPGVSGTN--DRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVRIKLL-RNKPDHAL 286
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 VQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 120/241 (49%), Gaps = 44/241 (18%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALMQMQD---VPSAVNALQ--------FFANLQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++R ++ V+F SH+ + D + Q G+ EP + +LL
Sbjct: 67 -SIR-----GRNVYVQFSSHQEL-----------TTADQNAQ------GRGDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T++VLH VF G V+KI F K+ G QALIQY Q AV A+ AL+G
Sbjct: 103 VTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQ 367
IYDG C+L I +S +L + NN+RSRD+T PS P S+P G+ P G T
Sbjct: 163 IYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPSLP---SEPK--GRSSQPGYGDTGGM 216
Query: 368 Y 368
Y
Sbjct: 217 Y 217
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +L E TEEE++ L + G +VN+K + QA I F QA
Sbjct: 347 YRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQAT 406
Query: 70 -AMISYYASSSEPAQVR 85
A++ +AS + +R
Sbjct: 407 EALVCKHASLLSGSIIR 423
>gi|340375863|ref|XP_003386453.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Amphimedon
queenslandica]
Length = 476
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 67/377 (17%)
Query: 1 MASVSSQPQFRYTQP-PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAF 59
+ S + +P+ P S+VLH+RNLP + TE ++ L +G V +K + +NQAF
Sbjct: 3 LDSAAKKPRMEEAVPVTSRVLHIRNLPSDATEADVFMLMSTYGAV--SKVLLLRQKNQAF 60
Query: 60 IEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TA 106
+E A+L+ A A++ A S+ PAQ++ +TVY+Q+S QE+ + T T
Sbjct: 61 VELAELSTACALVD--AFSTRPAQIKDRTVYIQFSKHQELKSGSTPIANPGGVPTFTSTV 118
Query: 107 DVAG-------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFS 159
V G ++L V IE ++IDVLH +F+ +G V K+ TF K F AL+Q+
Sbjct: 119 GVVGTSQGQPNSILRVIIENM-IYPITIDVLHQIFAKYGDVLKVVTFMKNTQFHALIQYP 177
Query: 160 DTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP- 218
+ A++AK ALDG++I G CTL I YS ++L+VKF + ++RD+T P LP
Sbjct: 178 NEIIATNAKTALDGQNIYN-------GCCTLHIDYSKLSNLTVKFNNEKTRDFTRPDLPS 230
Query: 219 ---------------VAPSAID--ASGQLSVGLDGKKLEPESN---------VLLASIEN 252
+ P+ + A QL L + V+LAS N
Sbjct: 231 GDPEAAPLPDLSAYGLHPAFLQSPAFAQLRTALTALGGTQGAAGAGVVAPTPVVLASNLN 290
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311
+ ++ L ++F +G V ++ ++ K AL+Q+ + Q A A L G +Y
Sbjct: 291 DK-MISPHALFILFGVYGDVMRVKILYSKRDS--ALVQFREAQQAQNAVTHLNGCMLYGK 347
Query: 312 GFCKLHISYSRHTDLSI 328
KLH++ S+HT + +
Sbjct: 348 ---KLHLTLSKHTQVQM 361
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
++ S +G V K+ + QA V+ ++ TA + +A R P + T+
Sbjct: 39 MLMSTYGAVSKVLLLRQKN--QAFVELAELSTACALVDAFSTR-------PAQIKDRTVY 89
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 251
I +S H +L + P+A + +VG+ G +++L IE
Sbjct: 90 IQFSKHQELK------------SGSTPIANPGGVPTFTSTVGVVGTSQGQPNSILRVIIE 137
Query: 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311
NM Y +T+DVLH +F+ +G V K+ F KN ALIQYP+ A AK AL+G IY+G
Sbjct: 138 NMIYPITIDVLHQIFAKYGDVLKVVTFMKNTQFHALIQYPNEIIATNAKTALDGQNIYNG 197
Query: 312 GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
C LHI YS+ ++L++K NN+++RD+T P P
Sbjct: 198 C-CTLHIDYSKLSNLTVKFNNEKTRDFTRPDLP 229
>gi|115441273|ref|NP_001044916.1| Os01g0867800 [Oryza sativa Japonica Group]
gi|113534447|dbj|BAF06830.1| Os01g0867800 [Oryza sativa Japonica Group]
gi|215697244|dbj|BAG91238.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 439
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 124/369 (33%), Positives = 188/369 (50%), Gaps = 60/369 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E EL+++ +PFG V K + +NQ DL A+ +I YY
Sbjct: 4 PSKVIHIRNVGHEISESELLQVVQPFGTV--AKLVMLRAKNQ----MEDLASAVNVIQYY 57
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------ADVAGNVLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ VYLQYS+ QE+ ++++ + +LLVTI ++I+V
Sbjct: 58 -NTIQPS-VRGRNVYLQYSSHQELTTDQSSHGRNPDQEEPNRILLVTIHHM-LYPITIEV 114
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS +GFV KI TF+K+AGFQ L+Q+ ++A A AL GR+I G C
Sbjct: 115 LHQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYD-------GCCQ 167
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVA------------PSAI-------DASGQL 230
L I YS ++L V + + RSRD+TNP LP PS++ D Q+
Sbjct: 168 LDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRSRSSQPSYNDPSSLFGFQQPGDPYAQM 227
Query: 231 S-----VGLDGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
S G L P + LL S N + D L +FS +G + +I +
Sbjct: 228 SKAAMIAAAFGGTLPPGVSGINDRCTLLVSNLNTD-KIDEDKLFNLFSMYGNIVRIKIL- 285
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
KN ALIQ D A +A L+G ++ KL ++YS++ ++ + +RDY+
Sbjct: 286 KNKPDHALIQMADGLQAELAVLYLKGAMLFGK---KLEVNYSKYPTVTADPD---ARDYS 339
Query: 340 LPSTPMVNS 348
NS
Sbjct: 340 TSHLNRFNS 348
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N YL + + Q S G + + EP + +LL +I +M Y +T++VLH VFS +G V+
Sbjct: 68 NVYLQYSSHQELTTDQSSHGRNPDQEEP-NRILLVTIHHMLYPITIEVLHQVFSPYGFVE 126
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G Q LIQY Q+A+ A AL G IYDG C+L I YS ++L + NND
Sbjct: 127 KIVTFQKSAGFQTLIQYQSRQSAIQAYGALHGRNIYDGC-CQLDIQYSNLSELQVHYNND 185
Query: 334 RSRDYTLPSTPM----VNSQPS 351
RSRD+T PS P +SQPS
Sbjct: 186 RSRDFTNPSLPTEQRSRSSQPS 207
>gi|432915659|ref|XP_004079197.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oryzias
latipes]
Length = 523
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 176/398 (44%), Gaps = 96/398 (24%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+ Q PPS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E
Sbjct: 33 SKKQRLDESPPSRVLHIRKLPNEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELGTE 90
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA--- 122
AI M++YY + + QVR V++QYSN +E+ + A VL D
Sbjct: 91 EAAITMVNYYTAVT--PQVRNTPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQDGSSP 148
Query: 123 -----------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVL +FS FG V KI TF K FQAL+Q
Sbjct: 149 SSDPGVLELAPPPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQ 208
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
FSD A AK +LDG++I CTLRI +S +L+VK+ + +SRDYT P L
Sbjct: 209 FSDPVNAQQAKLSLDGQNIYNSC-------CTLRIDFSKLVNLNVKYNNDKSRDYTRPDL 261
Query: 218 PVAPSAIDA-----------SGQLS----------------------------------- 231
P D+ SG L+
Sbjct: 262 PTGDG--DSANKDHSLLGTPSGALASYSSGGSYSSSLSLSQGGGAISPLSAAAAAAAAAG 319
Query: 232 -VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
V L G + S VLLAS N + VT L +F +G VQ++ + N ALIQ
Sbjct: 320 RVALSGSGV---SGVLLASNLN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQL 374
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
D A +A L G ++ + ++ S+H +++
Sbjct: 375 SDGNQAQLAMSHLNGQKVFGK---VMRVTLSKHQTVAL 409
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P S VL I+NM Y VTLDVL +FS FG V KI F KN QAL+Q+ D A AK
Sbjct: 160 PPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAK 219
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM-----VNSQPSILG 354
+L+G IY+ C L I +S+ +L++K NND+SRDYT P P N S+LG
Sbjct: 220 LSLDGQNIYN-SCCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPTGDGDSANKDHSLLG 277
>gi|410904361|ref|XP_003965660.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Takifugu
rubripes]
Length = 481
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 173/348 (49%), Gaps = 59/348 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR LP+ TE+E++ L PFG+V +K +NQ F+E A A+ M++YY
Sbjct: 25 PSRVLHLRQLPFNITEQEVLALALPFGRV--SKLITLKAKNQGFLEMASEEAAVTMMNYY 82
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE--------GTDARL--- 124
S+ P +R + V++QYSN +E+ + T A + T G+D R
Sbjct: 83 TSA--PPTIRNQPVFIQYSNHRELKTDNLTNQRAALQAISTAAMHSGTMAPGSDGRGVVH 140
Query: 125 ----------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
V+++VL +FS FG V KI TF + FQAL+QFSD A AK
Sbjct: 141 GQSPVLRIIVENLFYPVTLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDAVHAQHAK 200
Query: 169 NALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG 228
+LDG++I G CTLRI +S + L+VK+ + +SRD+T LP A+
Sbjct: 201 ASLDGQNIYN-------GCCTLRIDFSKLSALNVKYNNDKSRDFTRSDLPTGELDPTAAF 253
Query: 229 QLSVGLD-----GKKLEPES-----------NVLLASIENMQYAVTLDVLHMVFSAFGPV 272
LS GL G + P +VLL S N + +V+ L ++F +G V
Sbjct: 254 TLSPGLSVAAVPGSLMSPPRVSLQMAPPAIHSVLLVSNLNPE-SVSPQCLFILFGVYGDV 312
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
Q++ +F+K AL+Q D A +A L G ++ G ++ +S
Sbjct: 313 QRVKILFNKKEN--ALVQMSDATQAQLAMSHLNGQRLH-GNVIRVMLS 357
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 123/260 (47%), Gaps = 51/260 (19%)
Query: 114 LVTIEGTDARLVS-------IDVLHL-----------VFSA---FGFVHKITTFEKTAGF 152
L T++GTD VS VLHL V + FG V K+ T + A
Sbjct: 6 LSTVDGTDGLCVSERAPCVPSRVLHLRQLPFNITEQEVLALALPFGRVSKLITLK--AKN 63
Query: 153 QALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR-----ITYSAHTDLSVKFQSH 207
Q ++ + E A + N P T+R I YS H +L
Sbjct: 64 QGFLEMASEEAAVTMMNYYTS------------APPTIRNQPVFIQYSNHREL------- 104
Query: 208 RSRDYTN--PYLPVAPSAIDASGQLSVGLDGKKL-EPESNVLLASIENMQYAVTLDVLHM 264
++ + TN L +A SG ++ G DG+ + +S VL +EN+ Y VTL+VL
Sbjct: 105 KTDNLTNQRAALQAISTAAMHSGTMAPGSDGRGVVHGQSPVLRIIVENLFYPVTLEVLQQ 164
Query: 265 VFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
+FS FG V KI F +N QAL+Q+ D A AK +L+G IY+G C L I +S+ +
Sbjct: 165 IFSKFGSVLKIITFTRNNQFQALLQFSDAVHAQHAKASLDGQNIYNGC-CTLRIDFSKLS 223
Query: 325 DLSIKVNNDRSRDYTLPSTP 344
L++K NND+SRD+T P
Sbjct: 224 ALNVKYNNDKSRDFTRSDLP 243
>gi|402855348|ref|XP_003892288.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 2 [Papio
anubis]
Length = 506
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 176/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 84 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 141
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 142 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 201
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 202 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 254
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 255 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 314
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 315 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 371
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 372 QKMY-GKIIR--VTLSKH 386
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 206 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 255
>gi|440902651|gb|ELR53420.1| Polypyrimidine tract-binding protein 2, partial [Bos grunniens
mutus]
Length = 524
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 44 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 101
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 102 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 159
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 160 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 219
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 220 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 272
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 273 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 332
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 333 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 389
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 390 QKMY-GKIIR--VTLSKH 404
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 164 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 223
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 224 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 273
>gi|431896401|gb|ELK05813.1| Polypyrimidine tract-binding protein 2 [Pteropus alecto]
Length = 485
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 176/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 5 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 62
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 63 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 120
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 121 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 180
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 181 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 233
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 234 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 293
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 294 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 350
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 351 QKMY-GKIIR--VTLSKH 365
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 125 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 184
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 185 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 234
>gi|281349698|gb|EFB25282.1| hypothetical protein PANDA_003123 [Ailuropoda melanoleuca]
Length = 501
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 176/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 21 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 78
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 79 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 136
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 137 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 196
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 197 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 249
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 250 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 309
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 310 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 366
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 367 QKMY-GKIIR--VTLSKH 381
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 141 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 200
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 201 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 250
>gi|16307418|gb|AAH10255.1| Polypyrimidine tract binding protein 2 [Mus musculus]
Length = 531
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N + +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNIL--MLKEKNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|405953685|gb|EKC21299.1| Regulator of differentiation 1 [Crassostrea gigas]
Length = 764
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 132/232 (56%), Gaps = 33/232 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R+LP +CTE ++++LG P+GK+ N + +NQAF+EF D A+ M+S++
Sbjct: 279 PSRVVHIRSLPPDCTEADVVQLGMPYGKMSNVL--LLKQKNQAFLEFLDEQAAVTMVSFH 336
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA--------------DVAGNVLLVTIEGTD 121
PAQ+R K VY+Q+SN +E+ ++ + V G + T
Sbjct: 337 --QQNPAQIRMKPVYVQFSNHKELKTDQANSFQNATAQAALQAASAVMGGPTEEGQKRTT 394
Query: 122 ARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
R+ V I+VL+ +FS FG V K+ F K FQAL+Q SD A++AK +LDG
Sbjct: 395 LRIIVEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQMSDPVAANAAKLSLDG 454
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
++I G CTLRI YS +L+VK+ + +SRD+TNP LP +D
Sbjct: 455 QNIYN-------GCCTLRIDYSKLNNLNVKYNNDKSRDFTNPNLPSGDPGLD 499
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+E++ Y V ++VL+ +FS FG V K+ +F KN QALIQ D A AK +L+G IY
Sbjct: 399 VEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQMSDPVAANAAKLSLDGQNIY 458
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+ G C L I YS+ +L++K NND+SRD+T P+ P
Sbjct: 459 N-GCCTLRIDYSKLNNLNVKYNNDKSRDFTNPNLP 492
>gi|297279324|ref|XP_001105316.2| PREDICTED: polypyrimidine tract-binding protein 2-like isoform 6
[Macaca mulatta]
gi|22218306|gb|AAM94625.1| non-neuronal splice variant nPTB4 [Homo sapiens]
gi|119593412|gb|EAW73006.1| polypyrimidine tract binding protein 2, isoform CRA_b [Homo
sapiens]
Length = 536
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 286 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 345
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 346 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 402
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 403 QKMY-GKIIR--VTLSKH 417
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|301758643|ref|XP_002915171.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Ailuropoda
melanoleuca]
gi|395730215|ref|XP_002810624.2| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Pongo
abelii]
gi|22218304|gb|AAM94624.1| non-neuronal splice variant nPTB3 [Homo sapiens]
gi|119593414|gb|EAW73008.1| polypyrimidine tract binding protein 2, isoform CRA_d [Homo
sapiens]
Length = 537
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 286 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 345
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 346 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 402
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 403 QKMY-GKIIR--VTLSKH 417
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|426330458|ref|XP_004026228.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3
[Gorilla gorilla gorilla]
Length = 548
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 125
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 126 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 183
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 184 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 243
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 244 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 296
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 297 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 356
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 357 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 413
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 414 QKMY-GKIIR--VTLSKH 428
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++ P +
Sbjct: 248 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL-----DPAI 301
Query: 362 GATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
A FA E ++ P AA GA+ P
Sbjct: 302 AAA--------FA---KETSLLGLPVAAVPGALSP 325
>gi|194389592|dbj|BAG61757.1| unnamed protein product [Homo sapiens]
Length = 540
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N + +NQAF+E A AI M++YY
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNIL--MLKEKNQAFLELATEEAAITMVNYY 122
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 123 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 180
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 181 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 240
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 241 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 293
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 294 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 353
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 354 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 409
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 410 GKIIR--VTLSKH 420
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 185 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 244
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 245 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 294
>gi|332809593|ref|XP_003308280.1| PREDICTED: polypyrimidine tract-binding protein 2 [Pan troglodytes]
gi|397474051|ref|XP_003808504.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 3 [Pan
paniscus]
Length = 548
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 125
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 126 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 183
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 184 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 243
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 244 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 296
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 297 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 356
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 357 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 413
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 414 QKMY-GKIIR--VTLSKH 428
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 86/155 (55%), Gaps = 17/155 (10%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++ P +
Sbjct: 248 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL-----DPAI 301
Query: 362 GATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
A FA E ++ P AA GA+ P
Sbjct: 302 AAA--------FA---KETSLLGLPVAAVPGALSP 325
>gi|344293564|ref|XP_003418492.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Loxodonta
africana]
Length = 686
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 184/400 (46%), Gaps = 85/400 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 206 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 263
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 264 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 321
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 322 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 382 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 434
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 435 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 494
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 495 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 551
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
+Y G ++ +S + L + +D+ ++P+
Sbjct: 552 QKMY-GKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPL 590
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 326 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 385
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 386 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 435
>gi|413933764|gb|AFW68315.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
gi|413945515|gb|AFW78164.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 444
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 183/352 (51%), Gaps = 60/352 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQ ++ D++ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGVV--SKIVMLRAKNQTLLQMEDIHASVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 62 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHM-IYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I G C
Sbjct: 119 VLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPV----------------------------- 219
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANLYAFQQAGASYAQ 231
Query: 220 ----APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
A A G L G+ G ++++++ N + + D L +FS +G + +I
Sbjct: 232 MGRAAMIAAAFGGTLPHGVTGTN--ERCTLIVSNLNNDK--IDEDKLFNLFSLYGNIVRI 287
Query: 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 288 KVL-RNKPDHALVEMADGLQAELAVHYLKGAILFGK---KLEVNYSKYPNIT 335
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N Y+ + + Q S G + + + +LL +I +M Y +T++VLH VF A+G V+
Sbjct: 72 NVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVLHQVFKAYGFVE 131
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G QALIQ+ Q AV A +L G IYDG C+L I YS ++L + NND
Sbjct: 132 KIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNND 190
Query: 334 RSRDYTLPSTP 344
RSRD+T PS P
Sbjct: 191 RSRDFTNPSLP 201
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E +EE ++ G VVNTK + QA + F A
Sbjct: 359 YRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAAT 418
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 419 EALVSKHASTLE-----GNTIRISFSQMQSI 444
>gi|296082547|emb|CBI21552.3| unnamed protein product [Vitis vinifera]
Length = 374
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 20/211 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L PFG V TK + +NQA ++ D+ A++ + YY
Sbjct: 4 PSKVIHVRNVGPEISENDLLQLVHPFGVV--TKLVMLRAKNQALLQMQDVASAVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN-------NKTTADVAGN-VLLVTIEGTDARLVSI 127
A+ +P+ VRG+ VY+Q+S+ QE+ K D N +LLVTI +++
Sbjct: 62 ANV-QPS-VRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHL-LYPITV 118
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
+VLH VFS GFV KI TF+K+AGFQAL+Q+ ++A SA NAL GR+I G
Sbjct: 119 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYD-------GC 171
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
C L I +S T+L V + + RSRD+TNP LP
Sbjct: 172 CQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 109/217 (50%), Gaps = 35/217 (16%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L LV FG V K+ A QAL+Q D +A SA + Y N+ P
Sbjct: 21 DLLQLV-HPFGVVTKLVMLR--AKNQALLQMQDVASAVSA--------LQYY---ANVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++ V+F SH+ + Q S G G + + +LL
Sbjct: 67 SV------RGRNVYVQFSSHQE--------------LTTMDQNSQGRKGDQDAQPNRILL 106
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A AL+G
Sbjct: 107 VTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRN 166
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYD G C+L I +S T+L + NN+RSRD+T PS P
Sbjct: 167 IYD-GCCQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
>gi|147856398|emb|CAN82466.1| hypothetical protein VITISV_002663 [Vitis vinifera]
Length = 476
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 20/211 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L PFG V TK + +NQA ++ D+ A++ + YY
Sbjct: 4 PSKVIHVRNVGPEISENDLLQLVHPFGVV--TKLVMLRAKNQALLQMQDVASAVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN-------NKTTADVAGN-VLLVTIEGTDARLVSI 127
A+ +P+ VRG+ VY+Q+S+ QE+ K D N +LLVTI +++
Sbjct: 62 ANV-QPS-VRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHL-LYPITV 118
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
+VLH VFS GFV KI TF+K+AGFQAL+Q+ ++A SA NAL GR+I G
Sbjct: 119 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYD-------GC 171
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
C L I +S T+L V + + RSRD+TNP LP
Sbjct: 172 CQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 109/217 (50%), Gaps = 35/217 (16%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L LV FG V K+ A QAL+Q D +A SA + Y N+ P
Sbjct: 21 DLLQLV-HPFGVVTKLVMLR--AKNQALLQMQDVASAVSA--------LQYY---ANVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++ V+F SH+ + Q S G G + + +LL
Sbjct: 67 SV------RGRNVYVQFSSHQE--------------LTTMDQNSQGRKGDQDAQPNRILL 106
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A AL+G
Sbjct: 107 VTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRN 166
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYD G C+L I +S T+L + NN+RSRD+T PS P
Sbjct: 167 IYD-GCCQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 391 YRYCCSPTKMIHVSTLPQDITEEEIVTHLEKHGSIVNTKLFEANGKKQALVLFETEEQAT 450
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS + G T+ + +S Q I
Sbjct: 451 EALVCKHAS-----LIDGSTIRISFSQLQAI 476
>gi|351704481|gb|EHB07400.1| Polypyrimidine tract-binding protein 2 [Heterocephalus glaber]
Length = 539
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 175/380 (46%), Gaps = 89/380 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS----------------GQLS--------------------VGLDGKKLEPES 243
AI A+ G LS VG+ G +
Sbjct: 286 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAXXXXXXXXAAAGRVGMPGVSAGGNT 345
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
+L++++ + VT L +F +G VQ++ + N ALIQ D + +A L
Sbjct: 346 VLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHL 402
Query: 304 EGHCIYDGGFCKLHISYSRH 323
G +Y G + ++ S+H
Sbjct: 403 NGQKMY-GKIIR--VTLSKH 419
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|359480735|ref|XP_002277938.2| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 1 [Vitis vinifera]
Length = 448
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 20/211 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L PFG V TK + +NQA ++ D+ A++ + YY
Sbjct: 4 PSKVIHVRNVGPEISENDLLQLVHPFGVV--TKLVMLRAKNQALLQMQDVASAVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN-------NKTTADVAGN-VLLVTIEGTDARLVSI 127
A+ +P+ VRG+ VY+Q+S+ QE+ K D N +LLVTI +++
Sbjct: 62 ANV-QPS-VRGRNVYVQFSSHQELTTMDQNSQGRKGDQDAQPNRILLVTIHHL-LYPITV 118
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
+VLH VFS GFV KI TF+K+AGFQAL+Q+ ++A SA NAL GR+I G
Sbjct: 119 EVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRNIYD-------GC 171
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
C L I +S T+L V + + RSRD+TNP LP
Sbjct: 172 CQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 109/217 (50%), Gaps = 35/217 (16%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L LV FG V K+ A QAL+Q D +A SA + Y N+ P
Sbjct: 21 DLLQLV-HPFGVVTKLVMLR--AKNQALLQMQDVASAVSA--------LQYY---ANVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++ V+F SH+ + Q S G G + + +LL
Sbjct: 67 SV------RGRNVYVQFSSHQE--------------LTTMDQNSQGRKGDQDAQPNRILL 106
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A AL+G
Sbjct: 107 VTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSAINALQGRN 166
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYD G C+L I +S T+L + NN+RSRD+T PS P
Sbjct: 167 IYD-GCCQLDIQFSNLTELQVNYNNERSRDFTNPSLP 202
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 363 YRYCCSPTKMIHVSTLPQDITEEEIVTHLEKHGSIVNTKLFEANGKKQALVLFETEEQAT 422
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS + G T+ + +S Q I
Sbjct: 423 EALVCKHAS-----LIDGSTIRISFSQLQAI 448
>gi|413945516|gb|AFW78165.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 444
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 183/352 (51%), Gaps = 60/352 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQ ++ D++ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGVV--SKIVMLRAKNQTLLQMEDIHASVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 62 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHM-IYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I G C
Sbjct: 119 VLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPV----------------------------- 219
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANLYAFQQAGGSIYQ 231
Query: 220 ----APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
A A G L G+ G ++++++ N + + D L +FS +G + +I
Sbjct: 232 MGRAAMIAAAFGGTLPHGVTGTN--ERCTLIVSNLNNDK--IDEDKLFNLFSLYGNIVRI 287
Query: 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 288 KVL-RNKPDHALVEMADGLQAELAVHYLKGAILFGK---KLEVNYSKYPNIT 335
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N Y+ + + Q S G + + + +LL +I +M Y +T++VLH VF A+G V+
Sbjct: 72 NVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVLHQVFKAYGFVE 131
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G QALIQ+ Q AV A +L G IYDG C+L I YS ++L + NND
Sbjct: 132 KIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNND 190
Query: 334 RSRDYTLPSTP 344
RSRD+T PS P
Sbjct: 191 RSRDFTNPSLP 201
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E +EE ++ G VVNTK + QA + F A
Sbjct: 359 YRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAAT 418
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 419 EALVSKHASTLE-----GNTIRISFSQMQSI 444
>gi|391330010|ref|XP_003739458.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Metaseiulus
occidentalis]
Length = 588
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 172/376 (45%), Gaps = 85/376 (22%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
+V+HLRN+P + ++ E+++LG PFGK+ N G +NQAF+E A M+ Y+A
Sbjct: 107 RVVHLRNVPNDASDSEILQLGIPFGKITNILQLRG--KNQAFLEMETEVSAGQMVEYFAK 164
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKT------------------TADVAG--------- 110
+S P Q+RG+T+Y+Q SN +E+ N DV
Sbjct: 165 TSSPPQIRGRTIYVQQSNHRELKVNDNGHGMLLNSTQVALAAAQALVDVGSGEISPTHNG 224
Query: 111 ---NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
N +L I +++DVL+ +FS G V KI TF K QALVQ+ D A +A
Sbjct: 225 QTLNTVLRVIIENQLYPITLDVLNSLFSRIGKVLKIVTFNKNNTLQALVQYGDALAAQAA 284
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
K LDG+ I CTLRI YS L+VK+ + +SRD+TNP LP +D
Sbjct: 285 KMTLDGQHIYNSC-------CTLRIEYSKLQQLNVKYNNDKSRDFTNPSLPTGDPTLDNL 337
Query: 228 G-------------------------------------QLSVGLDGKKL--EPESNVLLA 248
G ++G+ +L P+S VLL
Sbjct: 338 GLANPLGMLHSPFANLGSHLTAAFNPPTLPLGGFALPAAQALGVASLRLPGTPQSCVLLV 397
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
S N Q VT D L +F +G V ++ MF+K ALIQ + Q A VA L+
Sbjct: 398 SNLNEQ-TVTPDALFTLFGVYGDVIRVKIMFNKKDS--ALIQMAEPQQAHVAMTHLDKIK 454
Query: 308 IYDGGFCKLHISYSRH 323
++ +L ++ S+H
Sbjct: 455 LFGK---QLRVTPSKH 467
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
SG++S +G+ L + VL IEN Y +TLDVL+ +FS G V KI F+KN LQ
Sbjct: 214 GSGEISPTHNGQTL---NTVLRVIIENQLYPITLDVLNSLFSRIGKVLKIVTFNKNNTLQ 270
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
AL+QY D A AK L+G IY+ C L I YS+ L++K NND+SRD+T PS P
Sbjct: 271 ALVQYGDALAAQAAKMTLDGQHIYN-SCCTLRIEYSKLQQLNVKYNNDKSRDFTNPSLP 328
>gi|334324359|ref|XP_001381834.2| PREDICTED: polypyrimidine tract-binding protein 2-like [Monodelphis
domestica]
Length = 640
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 174/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 160 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEESAITMVNYY 217
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 218 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 275
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 276 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 335
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 336 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 388
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 389 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 448
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 449 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 505
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y + ++ S+H
Sbjct: 506 QKMYGK---IIRVTLSKH 520
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 280 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 339
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 340 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 389
>gi|149034650|gb|EDL89387.1| polypyrimidine tract binding protein 1, isoform CRA_d [Rattus
norvegicus]
Length = 500
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 186/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 21 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 78
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 79 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 136
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 137 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 195
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 196 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 248
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 249 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 308
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 309 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNG 365
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 366 HKLHGKS---VRITLSKHQSVQL 385
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 143 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 202
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 203 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 258
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 303 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 359
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 360 MSHLNGHK---------LHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 410
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 411 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 464
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 465 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 499
>gi|426216016|ref|XP_004002265.1| PREDICTED: polypyrimidine tract-binding protein 2 [Ovis aries]
Length = 510
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 177/379 (46%), Gaps = 88/379 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 29 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 86
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL--VT--------IEGTDA--- 122
++ + +R + +Y+QYSN +E+ + T +L VT + GT
Sbjct: 87 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQARAQAVLQAVTAVQTASTPLSGTTVSES 144
Query: 123 ----------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 145 AVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNA 204
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS-- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 205 QQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQP 257
Query: 223 ----AIDAS----------------GQLS------------------VGLDGKKLEPESN 244
AI A+ G LS VG+ G +
Sbjct: 258 ALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTV 317
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
+L++++ + VT L +F +G VQ++ + N ALIQ D + +A L
Sbjct: 318 LLVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLN 374
Query: 305 GHCIYDGGFCKLHISYSRH 323
G +Y G + ++ S+H
Sbjct: 375 GQKMY-GKIIR--VTLSKH 390
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 150 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 209
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 210 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 259
>gi|194389558|dbj|BAG61740.1| unnamed protein product [Homo sapiens]
Length = 548
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 175/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 68 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 125
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 126 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 183
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 184 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 243
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 244 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 296
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 297 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 356
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 357 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 413
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 414 QKMY-GKIIR--VTLSKH 428
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 188 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 247
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 248 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 297
>gi|413933763|gb|AFW68314.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
Length = 445
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 183/353 (51%), Gaps = 61/353 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQ ++ D++ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGVV--SKIVMLRAKNQTLLQMEDIHASVSALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 62 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHM-IYPITVE 118
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I G C
Sbjct: 119 VLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYD-------GCC 171
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPV----------------------------- 219
L I YS ++L V + + RSRD+TNP LP
Sbjct: 172 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQQAYPDPANLYAFQQAGASYA 231
Query: 220 -----APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
A A G L G+ G ++++++ N + + D L +FS +G + +
Sbjct: 232 QMGRAAMIAAAFGGTLPHGVTGTN--ERCTLIVSNLNNDK--IDEDKLFNLFSLYGNIVR 287
Query: 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
I + +N AL++ D A +A L+G ++ KL ++YS++ +++
Sbjct: 288 IKVL-RNKPDHALVEMADGLQAELAVHYLKGAILFGK---KLEVNYSKYPNIT 336
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N Y+ + + Q S G + + + +LL +I +M Y +T++VLH VF A+G V+
Sbjct: 72 NVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVLHQVFKAYGFVE 131
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G QALIQ+ Q AV A +L G IYDG C+L I YS ++L + NND
Sbjct: 132 KIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNND 190
Query: 334 RSRDYTLPSTPMVNSQPSILGQQPVP 359
RSRD+T PS P +P QQ P
Sbjct: 191 RSRDFTNPSLP-TEQRPRASQQQAYP 215
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E +EE ++ G VVNTK + QA + F A
Sbjct: 360 YRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAAT 419
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 420 EALVSKHASTLE-----GNTIRISFSQMQSI 445
>gi|332221975|ref|XP_003260140.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 4
[Nomascus leucogenys]
Length = 568
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 174/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 88 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 145
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 146 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 203
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 204 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 263
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 264 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 316
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 317 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 376
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 377 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 433
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y + ++ S+H
Sbjct: 434 QKMYGK---IIRVTLSKH 448
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 208 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 267
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 268 ALDGQNIYNAC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 317
>gi|402765974|ref|NP_071961.2| polypyrimidine tract-binding protein 1 isoform b [Rattus
norvegicus]
gi|149034649|gb|EDL89386.1| polypyrimidine tract binding protein 1, isoform CRA_c [Rattus
norvegicus]
Length = 530
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 186/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 338
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 339 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNG 395
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 396 HKLHGK---SVRITLSKHQSVQL 415
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 333 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 389
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 390 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 440
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 441 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 494
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 495 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 529
>gi|334702289|gb|AEG89704.1| polypyrimidine tract-binding protein 6 [Solanum tuberosum]
Length = 444
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 131/212 (61%), Gaps = 16/212 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A+ + +Y
Sbjct: 4 PSKVIHVRNVGQEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDIAAAVNAMQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
S+ +P+ +RG++VY+Q+S+ QE+ N + D +LLV+I ++++VLH
Sbjct: 62 -SNVQPS-IRGRSVYVQFSSHQELTTVDQNAQGRGDEPNRILLVSIHHV-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS G V KI TF+K+AGFQAL+Q+ T+TA SA+N+L GR+I G C L
Sbjct: 119 QVFSPHGIVEKIVTFQKSAGFQALIQYELTQTAISARNSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA 223
I +S +L V + + R RD+TNP LP P
Sbjct: 172 IQFSNLDELQVSYNNERPRDFTNPNLPSEPKG 203
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 111/224 (49%), Gaps = 53/224 (23%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA-------SSAKNALDGRSIPRYL 180
D+L L F FG + K+ A QAL+Q D A S+ + ++ GRS+
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDIAAAVNAMQFYSNVQPSIRGRSV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ +D + Q G+ E
Sbjct: 74 ----------YVQFSSHQELT---------------------TVDQNAQ------GRGDE 96
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL SI ++ Y +T++VLH VFS G V+KI F K+ G QALIQY QTA+ A+
Sbjct: 97 P-NRILLVSIHHVLYPITVEVLHQVFSPHGIVEKIVTFQKSAGFQALIQYELTQTAISAR 155
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+L+G IYD G C+L I +S +L + NN+R RD+T P+ P
Sbjct: 156 NSLQGRNIYD-GCCQLDIQFSNLDELQVSYNNERPRDFTNPNLP 198
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +LP + TEEE++ + G +VNTK + QA + F + QA
Sbjct: 359 YRYCCSPTKMIHVSSLPQDVTEEEIVAHLEEHGPIVNTKLFEMNGKKQALVLFDNEEQAT 418
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +A+S + G + + +S Q I
Sbjct: 419 EALVCQHATS-----LGGSIIRISFSQVQSI 444
>gi|312378791|gb|EFR25262.1| hypothetical protein AND_09562 [Anopheles darlingi]
Length = 399
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 135/266 (50%), Gaps = 75/266 (28%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+P E +E E++ LG PFG+V N G +NQAFIE AD + A AM+S +
Sbjct: 8 SRVVHIRNIPNESSEVEIMHLGLPFGRVTNVLVLKG--KNQAFIEMADESAASAMVSMF- 64
Query: 77 SSSEPAQVRGKTVYLQYSNRQEI-------VNNKTTADVA--------GNVLLVTIEGTD 121
+ P VRG+TVY+QYSN +E+ + N T A A G+ L +TIE T+
Sbjct: 65 -HANPPFVRGRTVYVQYSNHRELKIDQNHAITNVTNALQAQDLTQSPTGSPLPITIEHTN 123
Query: 122 ARL-------------------------------------------------VSIDVLHL 132
+ VS+DVLH
Sbjct: 124 SNSQSATTNSNSNSNSNTTQSSGGGGGGGGGGGGGGAPNTVLRVIVESLLYPVSLDVLHQ 183
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+F FG V KI TF K FQAL+Q+ D +TA +AK +LDG++I G CTLRI
Sbjct: 184 IFQRFGKVLKIVTFTKNNSFQALIQYPDAQTAQTAKQSLDGQNIYN-------GCCTLRI 236
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLP 218
S T L+VK+ + +SRDYTNP LP
Sbjct: 237 DNSKLTALNVKYNNDKSRDYTNPSLP 262
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LDVLH +F FG V KI F KN QALIQYPD QTA AK++L+
Sbjct: 164 VLRVIVESLLYPVSLDVLHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAQTAQTAKQSLD 223
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRDYT PS P
Sbjct: 224 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDYTNPSLP 262
>gi|338725424|ref|XP_001490156.3| PREDICTED: polypyrimidine tract-binding protein 2 [Equus caballus]
gi|402855346|ref|XP_003892287.1| PREDICTED: polypyrimidine tract-binding protein 2 isoform 1 [Papio
anubis]
gi|194379976|dbj|BAG58340.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 125/233 (53%), Gaps = 41/233 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 84 SAVTP--HLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 141
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 142 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 201
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 202 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 247
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 205
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 206 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 255
>gi|170028938|ref|XP_001842351.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
gi|167879401|gb|EDS42784.1| polypyrimidine tract binding protein [Culex quinquefasciatus]
Length = 535
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 136/258 (52%), Gaps = 51/258 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E +E +++ LG PFG+V N G +NQAF+E AD + A +M++ +
Sbjct: 21 PSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKG--KNQAFLEMADESAATSMVTMF 78
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK------------------------TTADVAG- 110
++ P VRG+TVY+Q+SN +E+ ++ T + AG
Sbjct: 79 TAT--PPIVRGRTVYVQFSNHRELKTDQNHTATDLTQSPTGSPLPLALDHANTNSTTAGT 136
Query: 111 -----------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFS 159
N +L I + VS+D+L+ +F FG V KI TF K FQAL+Q+
Sbjct: 137 GANVGGNAGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYP 196
Query: 160 DTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 219
D TA AK LDG++I G CTLRI S T L+VK+ + +SRDYTNP LP
Sbjct: 197 DATTAQHAKQTLDGQNIYN-------GCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLPS 249
Query: 220 APSAID----ASGQLSVG 233
D A G +S G
Sbjct: 250 GEPGSDVIASAGGLVSAG 267
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 18/224 (8%)
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
+DV+HL FG V + + QA ++ +D A+S P +
Sbjct: 37 VDVMHLGV-PFGRVTNVLVLK--GKNQAFLEMADESAATSMVTMFTAT-------PPIVR 86
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYT-NPYLPVAPSAIDASGQLSVGLDGKKLEPE--- 242
T+ + +S H +L Q+H + D T +P P A+D + S
Sbjct: 87 GRTVYVQFSNHRELKTD-QNHTATDLTQSPTGSPLPLALDHANTNSTTAGTGANVGGNAG 145
Query: 243 --SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+ VL +E++ Y V+LD+L+ +F FG V KI F KN QALIQYPD TA AK
Sbjct: 146 GPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDATTAQHAK 205
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+ L+G IY+ G C L I S+ T L++K NND+SRDYT P+ P
Sbjct: 206 QTLDGQNIYN-GCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLP 248
>gi|157838029|ref|NP_001093477.1| polypyrimidine tract-binding protein 2 [Danio rerio]
Length = 538
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 182/409 (44%), Gaps = 94/409 (22%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS+V+H+R LP E +E E+I LG PFGKV N G +NQAF+E A+ M++Y
Sbjct: 51 PPSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKG--KNQAFLELGTEEAAVTMVNY 108
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI-----VNNKTTA----------------DVAGNVL 113
Y + + QVR V++QYSN +E+ +N + A D+A +
Sbjct: 109 YTAVT--PQVRNVPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQEGGSPSSDMASKSV 166
Query: 114 LVTIEGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
L R+ V++DVL +FS FG V KI TF K FQAL+QFSD A
Sbjct: 167 LTPAPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQ 226
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA----- 220
AK +LDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 227 QAKLSLDGQNIYNSC-------CTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPP 279
Query: 221 ---------------------------------PSAIDASGQLS-----------VGLDG 236
PS++ A LS V L G
Sbjct: 280 VDPSMAAALSKDSPSLLGTPSGMVTSYSSGGGFPSSLGAISPLSAAAAAAAAAGRVALSG 339
Query: 237 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
+ VLL S N + VT L +F +G VQ++ + N ALIQ D A
Sbjct: 340 HSV--PGGVLLVSNLNDEM-VTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMSDGNQA 395
Query: 297 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
+A L G +Y G ++ +S + L + +D+ S+P+
Sbjct: 396 QLAMSHLNGQKMY-GKIIRVTLSKHQTVQLPREGLDDQGLTKDFTSSPL 443
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL I+NM Y VTLDVL +FS FG V KI F KN QAL+Q+ D A AK +L+
Sbjct: 174 VLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLD 233
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
G IY+ C L I +S+ +L++K NND+SRDYT P P + QP +
Sbjct: 234 GQNIYN-SCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPPV 280
>gi|16580751|dbj|BAB71743.1| PTB-like protein S [Homo sapiens]
gi|119593415|gb|EAW73009.1| polypyrimidine tract binding protein 2, isoform CRA_e [Homo
sapiens]
Length = 356
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 124/233 (53%), Gaps = 41/233 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|198435860|ref|XP_002127727.1| PREDICTED: similar to polypyrimidine tract binding protein 1 [Ciona
intestinalis]
Length = 516
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 175/377 (46%), Gaps = 81/377 (21%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLR+LP + T+ E+I+LG +G V N G +NQAF+E D A M+S +
Sbjct: 41 SKVVHLRSLPGDVTDNEVIQLGLSYGHVTNVLMLKG--KNQAFLEMEDEEIANQMVS--S 96
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA------RLV----- 125
S P +R + +Y+Q+SN +E+ + + + +L ++ D R V
Sbjct: 97 SGISPPTIRQRIIYVQFSNHKELKTDSSPNQLKTQAILEAMQKRDGGPNHVLRAVIENML 156
Query: 126 ---SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++DVLH +FS FG + KI TF K++ FQAL+Q +D + +AK +LDG++I
Sbjct: 157 YPITLDVLHTIFSKFGVILKIITFTKSSQFQALIQMADALQSQTAKLSLDGQNIYN---- 212
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG---QLSVGLDGKKL 239
G CTLRI YS + L+VKF + +SRDYT LP ++I +G Q +G G
Sbjct: 213 ---GCCTLRIEYSKLSSLNVKFNNDKSRDYTRNDLPSGEASILGTGSTLQSMLGGAGLMP 269
Query: 240 EPESNVLLASIENMQYA------------------------------------------- 256
P N + A+I+ Q A
Sbjct: 270 SPYQNNIAAAIQQSQLASLANASGALQHLTGTNMAGNSNHMVTQLAAMVGQTSVLHVSNL 329
Query: 257 ----VTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311
VT L ++F +G V ++ M+ K AL+Q D Q A + L G +YD
Sbjct: 330 NEEMVTPQSLFILFGVYGDVNRVKIMYQKKSN--ALVQMNDHQQAQTVIKYLHGVKLYDR 387
Query: 312 GFCKLHISYSRHTDLSI 328
L I SRH + +
Sbjct: 388 ---PLQIMMSRHNQVQM 401
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 93/175 (53%), Gaps = 16/175 (9%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VL A IENM Y +TLDVLH +FS FG + KI F K+ QALIQ D + AK +
Sbjct: 145 NHVLRAVIENMLYPITLDVLHTIFSKFGVILKIITFTKSSQFQALIQMADALQSQTAKLS 204
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L+G IY+ G C L I YS+ + L++K NND+SRDYT P + + SILG G
Sbjct: 205 LDGQNIYN-GCCTLRIEYSKLSSLNVKFNNDKSRDYTRNDLP--SGEASILG------TG 255
Query: 363 AT-ANQYNGAQFAPPPPEQPM---MHQPTAAGWGAVPPASQSMP---MMGNHPYM 410
+T + GA P P + + + Q A A Q + M GN +M
Sbjct: 256 STLQSMLGGAGLMPSPYQNNIAAAIQQSQLASLANASGALQHLTGTNMAGNSNHM 310
>gi|296081200|emb|CBI18226.3| unnamed protein product [Vitis vinifera]
Length = 443
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 185/351 (52%), Gaps = 59/351 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAANAMQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
++ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 62 -TNVQPS-IRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHL-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV KI TF+K+AGFQAL+Q+ ++A +A+N+L GR+I G C L
Sbjct: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVA------------------------------- 220
I +S +L V + + RSRD+TNP LP
Sbjct: 172 IQFSNLDELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFPQM 231
Query: 221 --PSAIDAS--GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
SAI A+ G L G+ G VL++++ + + D L +FS +G + +I
Sbjct: 232 PNASAIAAAFGGGLPPGISGTN--DRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVRIK 287
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+ +N AL+Q D A +A L+G ++ +L +++S++++++
Sbjct: 288 LL-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKYSNIT 334
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 114/217 (52%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A++A N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAANAMQ-----------FYTNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++R ++ V+F SH+ + +D + Q G+ EP + +LL
Sbjct: 67 -SIR-----GRNVYVQFSSHQE-----------LTTVDQNAQ------GRGDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A+ +L+G
Sbjct: 103 VTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYD G C+L I +S +L + NN+RSRD+T PS P
Sbjct: 163 IYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPSLP 198
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ L + TEEE++ + G +VNTK + QA + F + QA
Sbjct: 358 YRYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQAT 417
Query: 70 -AMISYYAS 77
A++ +A+
Sbjct: 418 EALVCKHAT 426
>gi|224066621|ref|XP_002302167.1| predicted protein [Populus trichocarpa]
gi|222843893|gb|EEE81440.1| predicted protein [Populus trichocarpa]
Length = 436
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 177/339 (52%), Gaps = 46/339 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQLY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
++ +P +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++VLH
Sbjct: 62 -TNIQPT-IRGRNVYVQFSSHQELTTMDQNTQGRGDEPNRILLVTIHHM-LYPITVEVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV KI TF+K+AGFQAL+Q+ + A A+ +L GR+I G C L
Sbjct: 119 QVFSPHGFVEKIVTFQKSAGFQALIQYQSRQCAVQARTSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGL----------------- 234
I +S +L V + + RSRD+TNP LP S Q+ GL
Sbjct: 172 IQFSNLDELQVNYNNDRSRDFTNPNLPSEQKG--RSSQVCTGLLTIYHPLMPNAAAIAAA 229
Query: 235 DGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
G L P + +LAS N + D L +FS +G + +I + +N AL+
Sbjct: 230 FGGGLPPGISGTNDRCTVLASNLNPD-RIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 287
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Q D A +A L+G ++ ++ +++S+H +++
Sbjct: 288 QMGDGFQAELAVHFLKGAMLFGK---RMEVNFSKHPNIT 323
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 114/217 (52%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL L N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQD---VPSAINALQ--------LYTNIQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
T+R ++ V+F SH+ + +D + Q G+ EP + +LL
Sbjct: 67 -TIR-----GRNVYVQFSSHQE-----------LTTMDQNTQ------GRGDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T++VLH VFS G V+KI F K+ G QALIQY Q AV A+ +L+G
Sbjct: 103 VTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQCAVQARTSLQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYDG C+L I +S +L + NNDRSRD+T P+ P
Sbjct: 163 IYDGC-CQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 198
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF-ADLNQA 68
+RY P+K++HL LP TEEE+ L + G +VNTK + QA + F +
Sbjct: 347 YRYCCSPTKMIHLSTLPQVITEEEIGNLVEEHGTIVNTKLFEMNGKKQALVLFETEEEAT 406
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK 103
A++ +A+S + G V + +S Q I N+
Sbjct: 407 EALVCKHATS-----LAGSIVRISFSQLQSIRENQ 436
>gi|363814551|ref|NP_001242751.1| uncharacterized protein LOC100819672 [Glycine max]
gi|255639782|gb|ACU20184.1| unknown [Glycine max]
Length = 431
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 185/349 (53%), Gaps = 55/349 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA I+ D+ A+ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVNALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
A+ +P+ +RG+ VY+Q+S+ QE+ ++ D +LLVT+ +++DVL+
Sbjct: 62 ANV-QPS-IRGRNVYVQFSSHQELTTMEQSQGRGDEPNRILLVTVHHM-LYPMTVDVLYQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS G V KI TF+K+AGFQAL+Q+ ++A +A++ L GR+I G C L I
Sbjct: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----PS-----------AIDASGQLSVGL--- 234
+S +L V + + RSRD+TNP LP PS A SG +VG
Sbjct: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGARAVGFPQM 231
Query: 235 ---------DGKKLEP-------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
G L P VL++++ + + D L +FS +G + +I +
Sbjct: 232 ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVRIKLL 289
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+N ALIQ D A +A L+G +++ +L +++S+H +++
Sbjct: 290 -RNKPDHALIQMGDGFQAELAVHFLKGAMLFEK---RLEVNFSKHPNIT 334
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 54/224 (24%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN-------ALDGRSIPRYL 180
D+L L F FG + K+ A QAL+Q D +A +A ++ GR++
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALIQMQDVPSAVNALQFYANVQPSIRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ QS G+ E
Sbjct: 74 ----------YVQFSSHQELTTMEQSQ----------------------------GRGDE 95
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL ++ +M Y +T+DVL+ VFS G V+KI F K+ G QALIQY Q+AV A+
Sbjct: 96 P-NRILLVTVHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAAR 154
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
L+G IYDG C+L I +S +L + NNDRSRD+T P+ P
Sbjct: 155 STLQGRNIYDGC-CQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 197
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
+RY P+K++HL LP + TEEE++ L + G +VN+K + QA ++F
Sbjct: 358 YRYCCSPTKMIHLSTLPQDITEEEIVSLVEEHGTIVNSKVFEMNGKKQALVQFG 411
>gi|291398459|ref|XP_002715890.1| PREDICTED: polypyrimidine tract binding protein 2 [Oryctolagus
cuniculus]
Length = 536
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 176/378 (46%), Gaps = 87/378 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +++QYSN +E+ + T A VL + GT
Sbjct: 115 SAVT--PHLRNQPIFIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS----------------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 286 LDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 345
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 346 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 402
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y G + ++ S+H
Sbjct: 403 QKMY-GKIIR--VTLSKH 417
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|444509522|gb|ELV09317.1| Polypyrimidine tract-binding protein 1, partial [Tupaia chinensis]
Length = 522
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 128/233 (54%), Gaps = 33/233 (14%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 40 RSAGTPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNAEEAANT 97
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN------------------- 111
M++YY S + P +RG+ +Y+Q+SN +E+ + + +GN
Sbjct: 98 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQASGNLALAASAAAMDAGMAMAGQ 155
Query: 112 --VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 169
VL V +E V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK
Sbjct: 156 SPVLRVIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 214
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
+LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 215 SLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 260
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 155 QSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 214
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 215 SLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAF 272
Query: 362 GA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 273 GAPGIISASPYAGAGFPP 290
>gi|57002|emb|CAA43202.1| pyrimidine binding protein 1 [Rattus norvegicus]
Length = 530
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 186/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 338
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL++ D A +A L G
Sbjct: 339 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVEMADGSQAQLAMSHLNG 395
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 396 HKLHGK---SVRITLSKHQSVQL 415
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
>gi|224082480|ref|XP_002306709.1| predicted protein [Populus trichocarpa]
gi|222856158|gb|EEE93705.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 177/338 (52%), Gaps = 46/338 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + YY
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
+ +P +RG+ VY+Q+S+ QE+ N + + +LL+TI +++DVLH
Sbjct: 62 -TDVQPT-IRGRNVYIQFSSHQELTTMDQNTQGRGEEPNRILLITIHHMQYP-ITVDVLH 118
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV K+ TF+K+AGFQAL+Q+ ++A A+ +L GR+I G C L
Sbjct: 119 QVFSPHGFVEKMVTFQKSAGFQALIQYQSRQSAVQARTSLQGRNIYD-------GCCQLD 171
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS----------------------GQ 229
I +S +L V + + SRD+TNP LP A + G
Sbjct: 172 IQFSNLDELQVNYNNDSSRDFTNPNLPSEQKARSSQVCTRLLLYFHMPNAAAIAAAFGGG 231
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
L G+ G +L++++ + + D L +FS +G + +I + +N AL+Q
Sbjct: 232 LPPGISGTN--DRCTILVSNLNPDR--IDEDKLFNLFSLYGNIVRIKLL-RNKPDHALVQ 286
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
D A +A L+G ++ ++ +++S+H +++
Sbjct: 287 MGDGFQAELAVHFLKGAMLFGK---RMEVNFSKHPNIT 321
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 39/217 (17%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL + + P G
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQD---VPSAINALQYYTDVQ---PTIRGR 71
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
+ I +S+H +L+ +D + Q G+ EP + +LL
Sbjct: 72 -NVYIQFSSHQELT---------------------TMDQNTQ------GRGEEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +MQY +T+DVLH VFS G V+K+ F K+ G QALIQY Q+AV A+ +L+G
Sbjct: 103 ITIHHMQYPITVDVLHQVFSPHGFVEKMVTFQKSAGFQALIQYQSRQSAVQARTSLQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
IYDG C+L I +S +L + NND SRD+T P+ P
Sbjct: 163 IYDGC-CQLDIQFSNLDELQVNYNNDSSRDFTNPNLP 198
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF-ADLNQA 68
+RY P+K++HL LP TE+E++ L + G VVNTK + QA + F +
Sbjct: 345 YRYCCSPTKMIHLSTLPQVITEDEIVSLVEEHGTVVNTKLFEMNGKKQALVLFETEEEAT 404
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK 103
A++ +A+S + G V + +S Q I N+
Sbjct: 405 EALVCKHATS-----LAGSIVRISFSQLQSIRENQ 434
>gi|28949889|emb|CAD70621.1| polypyrimidine track-binding protein homologue [Cicer arietinum]
Length = 442
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 185/349 (53%), Gaps = 58/349 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L + FG + TK + +NQA ++ D+ AI+ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQTFGVI--TKLVMLRTKNQALLQMEDIPSAISALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
A++ +P+ +RG+ VY+Q+S+ +E+ ++ D +LLVT+ +++DVL
Sbjct: 62 ANA-QPS-IRGRNVYVQFSSHKELTTMDQSQGRDDEPNRILLVTVHQMQYP-ITVDVLQQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS G+V KI TF+K+AGFQAL+Q+ ++A +A+++L GR+I G C L I
Sbjct: 119 VFSPHGYVEKIVTFQKSAGFQALIQYESRQSAVTARSSLQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA-------------------------------- 220
+S +L V + + RSRDYTNP LP
Sbjct: 172 QFSNLDELQVNYNNDRSRDYTNPNLPTEQKGRPSHSGYGDTGMHGVQGSGARPGGFSQMT 231
Query: 221 -PSAIDAS--GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
+AI+A+ G L G+ G VL+A++ + + D L +FS +G + +I +
Sbjct: 232 NAAAIEAAFGGDLPPGITGTN--DRCTVLVANLNPDR--IDEDKLFNLFSIYGNIVRIKL 287
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
+N AL+Q D A +A L+G ++ +L +++S+H ++
Sbjct: 288 L-RNKPDHALVQMGDGFQAELAVYFLKGAMLFGK---RLEVNFSKHPNI 332
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 108/224 (48%), Gaps = 54/224 (24%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN-------ALDGRSIPRYL 180
D+L L F FG + K+ QAL+Q D +A SA ++ GR++
Sbjct: 21 DLLQL-FQTFGVITKLVMLRTKN--QALLQMEDIPSAISALQFYANAQPSIRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ QS G+ E
Sbjct: 74 ----------YVQFSSHKELTTMDQSQ----------------------------GRDDE 95
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL ++ MQY +T+DVL VFS G V+KI F K+ G QALIQY Q+AV A+
Sbjct: 96 P-NRILLVTVHQMQYPITVDVLQQVFSPHGYVEKIVTFQKSAGFQALIQYESRQSAVTAR 154
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+L+G IYDG C+L I +S +L + NNDRSRDYT P+ P
Sbjct: 155 SSLQGRNIYDGC-CQLDIQFSNLDELQVNYNNDRSRDYTNPNLP 197
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+RY P+K++HL LP + EEE+ L + G VVN K + QA ++F
Sbjct: 357 YRYCCSPTKIIHLSTLPQDIIEEEIASLLEEHGLVVNCKVFEMNGKKQALVQF 409
>gi|145324168|ref|NP_001077673.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
gi|332193842|gb|AEE31963.1| polypyrimidine tract-binding protein 3 [Arabidopsis thaliana]
Length = 430
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 179/339 (52%), Gaps = 50/339 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D++ A++ + ++
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFFT 62
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
+ Q + VY+Q+S+ QE+ N D +LLVTI +++DVLH
Sbjct: 63 N----VQPTIRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 117
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I
Sbjct: 118 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLDI 170
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS--G 228
+S +L V + + RSRDYTNP LP SAI A+ G
Sbjct: 171 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 230
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
L G+ G VL++++ ++ D L +FS +G + +I + +N AL+
Sbjct: 231 GLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 285
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 286 QMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 321
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 123/270 (45%), Gaps = 55/270 (20%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A SA N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
T+R Y V+F SH+ + + G++ EP + +LL
Sbjct: 67 -TIRNVY-------VQFSSHQELT-----------------TIEQNIHGREDEP-NRILL 100
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G
Sbjct: 101 VTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRN 160
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQ 367
IYDG C+L I +S +L + NNDRSRDYT P+ P G+ P G T
Sbjct: 161 IYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQK-----GRSSHPCYGDTGVA 214
Query: 368 YNGAQFAPPPPEQPMMHQPTAAGWGAVPPA 397
Y P+ AA G +PP
Sbjct: 215 Y---------PQMANTSAIAAAFGGGLPPG 235
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+RY P+K++HL LP + TEEE++ + G VVNTK + QA ++F
Sbjct: 345 YRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQF 397
>gi|119581562|gb|EAW61158.1| polypyrimidine tract binding protein 1, isoform CRA_g [Homo
sapiens]
Length = 501
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 22 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 79
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 80 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 137
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 138 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 196
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 197 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 249
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 250 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 309
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 310 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNG 366
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 367 HKLHGK---PIRITLSKHQNVQL 386
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 144 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 203
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 204 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 259
>gi|356535770|ref|XP_003536416.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Glycine max]
Length = 443
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 181/345 (52%), Gaps = 55/345 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA I+ D+ A+ + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALIQMQDVPSAVNALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
A+ +P+ +RG+ VY+Q+S+ QE+ ++ D +LLVT+ +++DVL+
Sbjct: 62 ANV-QPS-IRGRNVYVQFSSHQELTTMDQSQGRGDEPNRILLVTVHHM-LYPMTVDVLYQ 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS G V KI TF+K+AGFQAL+Q+ ++A +A++ L GR+I G C L I
Sbjct: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTLQGRNIYD-------GCCQLDI 171
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----PS-----------AIDASGQLSVGLD-- 235
+S +L V + + RSRD+TNP LP PS A SG +VG
Sbjct: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAGNMYAAQGSGARAVGFPQM 231
Query: 236 ----------GKKLEP-------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
G L P VL++++ + + D L +FS +G + +I +
Sbjct: 232 ANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIMRIKLL 289
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+N ALIQ D A +A L G +++ +L +++S+H
Sbjct: 290 -RNKPDHALIQMGDGFQAKLAVHFLRGAMLFEK---RLEVNFSKH 330
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 108/221 (48%), Gaps = 48/221 (21%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D SA NAL N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALIQMQD---VPSAVNALQ--------FYANVQP 66
Query: 188 C----TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243
+ + +S+H +L+ QS G+ EP +
Sbjct: 67 SIRGRNVYVQFSSHQELTTMDQSQ----------------------------GRGDEP-N 97
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
+LL ++ +M Y +T+DVL+ VFS G V+KI F K+ G QALIQY Q+AV A+ L
Sbjct: 98 RILLVTVHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVAARSTL 157
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+G IYDG C+L I +S +L + NNDRSRD+T P+ P
Sbjct: 158 QGRNIYDGC-CQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 197
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY PP+K++HL LP + TEEE++ L + G +VN+K + QA ++F + QA
Sbjct: 358 YRYCCPPTKMIHLSTLPLDITEEEIVSLVEEHGIIVNSKVFEMNGKKQALVQFENEEQAT 417
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS+ + G + + +S Q I
Sbjct: 418 EALVCKHAST-----LSGSVIRISFSQLQNI 443
>gi|402903488|ref|XP_003914597.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Papio
anubis]
gi|380814966|gb|AFE79357.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
gi|384948418|gb|AFI37814.1| polypyrimidine tract-binding protein 1 isoform c [Macaca mulatta]
Length = 530
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 338
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 339 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNG 395
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 396 HKLHGK---PIRITLSKHQNVQL 415
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
>gi|14165466|ref|NP_114368.1| polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]
gi|332850814|ref|XP_003316017.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Pan
troglodytes]
gi|131528|sp|P26599.1|PTBP1_HUMAN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=57 kDa RNA-binding protein PPTB-1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|35768|emb|CAA43973.1| polypirimidine tract binding protein [Homo sapiens]
gi|35774|emb|CAA43056.1| polypyrimidine tract-binding protein (pPTB) [Homo sapiens]
gi|4096061|gb|AAC99798.1| PTB_HUMAN [Homo sapiens]
gi|13325140|gb|AAH04383.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|119581559|gb|EAW61155.1| polypyrimidine tract binding protein 1, isoform CRA_d [Homo
sapiens]
gi|261860774|dbj|BAI46909.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|410218530|gb|JAA06484.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301206|gb|JAA29203.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 531
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 397 HKLHGK---PIRITLSKHQNVQL 416
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|348531446|ref|XP_003453220.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oreochromis
niloticus]
Length = 523
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 174/396 (43%), Gaps = 92/396 (23%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+ Q PPS+VLH+R LP E +E E+I LG PFGKV N G +NQAF+E
Sbjct: 33 SKKQRLDESPPSRVLHIRKLPNEVSETEVIALGLPFGKVTNILMLKG--KNQAFLELGTE 90
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA--- 122
A+ M++YY + + QVR V++QYSN +E+ + A VL D
Sbjct: 91 EAAVTMVNYYTAVT--PQVRNTPVFIQYSNHKELKTDSALNQRAQAVLQAVSAVQDGSSP 148
Query: 123 -----------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVL +FS FG V KI TF K FQAL+Q
Sbjct: 149 SSDPGVLDLTPPPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQ 208
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
FSD A AK +LDG++I CTLRI +S +++VK+ + +SRDYT P L
Sbjct: 209 FSDPVNAQQAKLSLDGQNIYNSC-------CTLRIDFSKLVNVNVKYNNDKSRDYTRPDL 261
Query: 218 PVAPSAIDA---------SGQLS------------------------------------V 232
P SG L+ V
Sbjct: 262 PTGDGESTNKDHSLLGTPSGALASYSSGGGYSSSLSLSQGGGAISPLSAAAAAAAAAGRV 321
Query: 233 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
L G + S VLLAS N + VT L +F +G VQ++ + N ALIQ D
Sbjct: 322 ALSGSGV---SGVLLASNLN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQLSD 376
Query: 293 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
A +A L G ++ + ++ S+H +++
Sbjct: 377 GNQAQLAMSHLNGQKVFGK---VMRVTLSKHQTVAL 409
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P S VL I+NM Y VTLDVL +FS FG V KI F KN QAL+Q+ D A AK
Sbjct: 160 PPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAK 219
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM-----VNSQPSILG 354
+L+G IY+ C L I +S+ ++++K NND+SRDYT P P N S+LG
Sbjct: 220 LSLDGQNIYN-SCCTLRIDFSKLVNVNVKYNNDKSRDYTRPDLPTGDGESTNKDHSLLG 277
>gi|118404352|ref|NP_001072479.1| polypyrimidine tract binding protein 2 [Xenopus (Silurana)
tropicalis]
gi|112418598|gb|AAI21904.1| polypyrimidine tract binding protein 2 [Xenopus (Silurana)
tropicalis]
Length = 531
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 174/374 (46%), Gaps = 84/374 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A A M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAASTMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------------VNNKTTADVAGN--- 111
+ + +R + +Y+QYSN +E+ +N + A N
Sbjct: 115 TTIT--PHLRNQPIYIQYSNHKELKTDSALNQRAQAVLQAVTAVQTSNSSVTSTAANENT 172
Query: 112 -------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
VL + I+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VSSAQSPVLRIIIDNM-YYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGDPVNA 231
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS-- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 232 QQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQP 284
Query: 223 ----AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLAS 249
AI A+ G LS VG+ G + +L+++
Sbjct: 285 ALDPAIAAAFAKETSLLAVPGALSPLGIPNAAAAAAAAAASRVGMHGVSTGGNTVLLVSN 344
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ + V+ L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 345 LN--EEMVSPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMSHLNGQKMY 401
Query: 310 DGGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 -GKIIR--VTLSKH 412
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>gi|359493141|ref|XP_002264689.2| PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform 1
[Vitis vinifera]
Length = 445
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 185/353 (52%), Gaps = 61/353 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ A + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAANAMQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN------VLLVTIEGTDARLVSIDV 129
++ +P+ +RG+ VY+Q+S+ QE+ A G+ +LLVTI ++++V
Sbjct: 62 -TNVQPS-IRGRNVYVQFSSHQELTTVDQNAQGRGDEVSPNRILLVTIHHL-LYPITVEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VFS GFV KI TF+K+AGFQAL+Q+ ++A +A+N+L GR+I G C
Sbjct: 119 LHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------------- 220
L I +S +L V + + RSRD+TNP LP
Sbjct: 172 LDIQFSNLDELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFP 231
Query: 221 ----PSAIDAS--GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
SAI A+ G L G+ G VL++++ + + D L +FS +G + +
Sbjct: 232 QMPNASAIAAAFGGGLPPGISGTN--DRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVR 287
Query: 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
I + +N AL+Q D A +A L+G ++ +L +++S++++++
Sbjct: 288 IKLL-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKYSNIT 336
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 51/224 (22%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN-------ALDGRSIPRYL 180
D+L L F FG + K+ A QAL+Q D +A++A ++ GR++
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVPSAANAMQFYTNVQPSIRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ Q+ + R G ++
Sbjct: 74 ----------YVQFSSHQELTTVDQNAQGR-------------------------GDEVS 98
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL +I ++ Y +T++VLH VFS G V+KI F K+ G QALIQY Q+AV A+
Sbjct: 99 P-NRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAAR 157
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+L+G IYD G C+L I +S +L + NN+RSRD+T PS P
Sbjct: 158 NSLQGRNIYD-GCCQLDIQFSNLDELQVNYNNERSRDFTNPSLP 200
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ L + TEEE++ + G +VNTK + QA + F + QA
Sbjct: 360 YRYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQAT 419
Query: 70 -AMISYYAS 77
A++ +A+
Sbjct: 420 EALVCKHAT 428
>gi|432964272|ref|XP_004086906.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Oryzias
latipes]
Length = 541
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 121/368 (32%), Positives = 173/368 (47%), Gaps = 72/368 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP E + E+I LG PFGKV N G +NQAF+E AI M++YY
Sbjct: 77 PSRVIHIRRLPTEAMDAEVIALGLPFGKVTNILTLRG--KNQAFLEMGTEEAAITMVNYY 134
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT------------------------ADVAGN 111
++ P VR VY+Q+SN +E+ + + A +
Sbjct: 135 --NTVPPHVRNSPVYVQFSNHKELKTDAASQRTQAVLQAVSAVQPPGSEVQDVLAAASSP 192
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
VL + I+ V++DVL +FS FG V KI TF K FQAL+Q+SD A AK AL
Sbjct: 193 VLRIIIDNM-FYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYSDPVQAQHAKLAL 251
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQ 229
DG++I CTLRI +S +L+VK+ + +SRDY+ P LP S +D S
Sbjct: 252 DGQNIYN-------SCCTLRIDFSKLVNLNVKYNNDKSRDYSRPELPAGDSRPTLDPSVA 304
Query: 230 LSVGLDGK--------KLEPES---------------------NVLLASIENMQYAVTLD 260
++ D L P S VLLAS N + VT
Sbjct: 305 AALSKDSTPLLCKIPGALNPLSAAAAAAAAAGRVALPGQAGSGGVLLASNLN-EEMVTPQ 363
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320
L +F +G VQ++ + N ALIQ D A +A L G +Y G + ++
Sbjct: 364 SLFTLFGVYGDVQRVKIL-YNKKDSALIQMCDPSQAQLAMSHLNGQKMY-GKIIR--VTL 419
Query: 321 SRHTDLSI 328
S+H +++
Sbjct: 420 SKHQSVAL 427
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 24/235 (10%)
Query: 118 EGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP 177
E DA ++++ + FG V I T QA ++ E A + N +
Sbjct: 89 EAMDAEVIALGL------PFGKVTNILTLR--GKNQAFLEMGTEEAAITMVNYYN----- 135
Query: 178 RYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK 237
+P ++ + + +S H +L S R++ V P + L+
Sbjct: 136 --TVPPHVRNSPVYVQFSNHKELKTDAASQRTQAVLQAVSAVQPPGSEVQDVLAAA---- 189
Query: 238 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
S VL I+NM Y VTLDVL +FS FG V KI F KN QAL+QY D A
Sbjct: 190 ----SSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYSDPVQAQ 245
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AK AL+G IY+ C L I +S+ +L++K NND+SRDY+ P P +S+P++
Sbjct: 246 HAKLALDGQNIYN-SCCTLRIDFSKLVNLNVKYNNDKSRDYSRPELPAGDSRPTL 299
>gi|148699697|gb|EDL31644.1| mCG13402, isoform CRA_b [Mus musculus]
Length = 499
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 184/382 (48%), Gaps = 82/382 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 21 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 78
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 79 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 136
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 137 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 195
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 196 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 248
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE---------------------------PESNVLL 247
LP S ++D + + GL + ++VLL
Sbjct: 249 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLL 308
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L GH
Sbjct: 309 VSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNGH 365
Query: 307 CIYDGGFCKLHISYSRHTDLSI 328
++ + I+ S+H + +
Sbjct: 366 KLHGKS---VRITLSKHQSVQL 384
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 143 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 202
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 203 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 258
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 302 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 358
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 359 MSHLNGHK---------LHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 409
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 410 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 463
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 464 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 498
>gi|169790993|ref|NP_001116126.1| polypyrimidine tract binding protein-like [Danio rerio]
Length = 564
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 127/235 (54%), Gaps = 39/235 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A M++YY
Sbjct: 69 PSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKG--KNQAFLEMNSEEAAQTMVTYY 126
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL----------VTIEGTD---- 121
SS P +R +++QYSN +E+ + + V L +T+ G D
Sbjct: 127 -SSVTPV-IRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSLTLGGVDPSGM 184
Query: 122 ------ARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
R+ V++DVLH +FS FG V K+ TF K FQAL+QF+D TA A
Sbjct: 185 TGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHA 244
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
K ALDG++I G CTLRI++S T L+VK+ + +SRDYT P LP S
Sbjct: 245 KLALDGQNIYN-------GCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS 292
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 96/162 (59%), Gaps = 10/162 (6%)
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA--SGQLSVG-LDGKKLEPESNVLLASI 250
YS H +L ++ R A A++A +G L++G +D + S VL +
Sbjct: 142 YSNHKELKTDNSPNQVR------AQAALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIV 195
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
EN+ Y VTLDVLH +FS FG V K+ F KN QAL+Q+ D TA AK AL+G IY+
Sbjct: 196 ENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYN 255
Query: 311 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
G C L IS+S+ T L++K NND+SRDYT P P +SQP++
Sbjct: 256 GC-CTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPAL 296
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASS 166
+ G ++ + + V+ L ++F +G V ++ F K AL+Q SD A
Sbjct: 365 LTGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKE--NALIQMSDGTQAQL 422
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPS 222
A + L+G+ + Y P LRIT S HT + + + H ++DY+N P+
Sbjct: 423 AMSHLNGQKL--YGRP-------LRITLSKHTTVQMPREGHEDQGLTKDYSNS--PLHRF 471
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
S S + P S+ L + N+ +V D L ++F + G + K F +
Sbjct: 472 KKPGSKNYS------NIFPPSSTL--HLSNIPPSVVEDDLKLLFGSSGALVKNFKFFQKD 523
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ + H + G L +S+S+ T
Sbjct: 524 RKMALIQMSSVEEAIESLIQFHNHDL--GENHHLRVSFSKST 563
>gi|73987401|ref|XP_868641.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 8 [Canis
lupus familiaris]
Length = 531
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 397 HKLHGK---PVRITLSKHQNVQL 416
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|432103873|gb|ELK30706.1| Polypyrimidine tract-binding protein 2 [Myotis davidii]
Length = 538
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 125/233 (53%), Gaps = 41/233 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A A+ M++YY
Sbjct: 23 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAVTMVNYY 80
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL--LVTIEGTDARL--------- 124
++ + +R + +Y+QYSN +E+ + T A VL + ++ + L
Sbjct: 81 SAVTP--HLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTAVSESA 138
Query: 125 -------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
V++DVLH +F+ FG V KI TF K FQAL+Q+ D A
Sbjct: 139 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFTKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 198
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 199 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 244
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +F+ FG V KI F KN QAL+QY D A AK
Sbjct: 143 QSPVLRIIIDNMYYPVTLDVLHQIFTKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 202
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 203 ALDGQNIYNAC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 252
>gi|413949172|gb|AFW81821.1| hypothetical protein ZEAMMB73_476847 [Zea mays]
Length = 339
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 130/211 (61%), Gaps = 19/211 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ DL+ +++ + YY
Sbjct: 89 PSKVIHIRNVGHEIAESDLLQLLQPFGMV--SKIVMLRAKNQALLQMEDLHASVSALQYY 146
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT-------ADVAGNVLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ +LLVTI ++++
Sbjct: 147 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQGSEPNRILLVTIHHM-IYPITVE 203
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
+LH VF A+GFV KI TF+K+AGFQAL+Q+ + A A +L GR+I G C
Sbjct: 204 ILHQVFKAYGFVEKIVTFQKSAGFQALIQYHSRQEAVEAFGSLHGRNIYD-------GCC 256
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 219
L I YS ++L V + + RSRD+TNP LP
Sbjct: 257 QLDIQYSNLSELQVHYNNDRSRDFTNPSLPT 287
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 50/238 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D + SA
Sbjct: 92 VIHIRNVGHEIAESDLLQLL-QPFGMVSKIVMLR--AKNQALLQMEDLHASVSALQYYTS 148
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
++ GR++ + +S+H +L+ SH
Sbjct: 149 VQPSIRGRNV--------------YMQFSSHQELTTDQSSH------------------- 175
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + +LL +I +M Y +T+++LH VF A+G V+KI F K+ G QA
Sbjct: 176 ------GRNSDQGSEPNRILLVTIHHMIYPITVEILHQVFKAYGFVEKIVTFQKSAGFQA 229
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LIQY Q AV A +L G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 230 LIQYHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 286
>gi|116517303|ref|NP_032982.2| polypyrimidine tract-binding protein 1 isoform 2 [Mus musculus]
gi|26336949|dbj|BAC32158.1| unnamed protein product [Mus musculus]
gi|26342100|dbj|BAC34712.1| unnamed protein product [Mus musculus]
gi|26349809|dbj|BAC38544.1| unnamed protein product [Mus musculus]
gi|74211646|dbj|BAE29183.1| unnamed protein product [Mus musculus]
gi|74212275|dbj|BAE40295.1| unnamed protein product [Mus musculus]
gi|148699696|gb|EDL31643.1| mCG13402, isoform CRA_a [Mus musculus]
gi|148699698|gb|EDL31645.1| mCG13402, isoform CRA_a [Mus musculus]
Length = 529
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 184/382 (48%), Gaps = 82/382 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE---------------------------PESNVLL 247
LP S ++D + + GL + ++VLL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLL 338
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L GH
Sbjct: 339 VSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNGH 395
Query: 307 CIYDGGFCKLHISYSRHTDLSI 328
++ + I+ S+H + +
Sbjct: 396 KLHGK---SVRITLSKHQSVQL 414
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 332 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 388
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 389 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 439
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 440 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 493
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 494 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 528
>gi|66472746|ref|NP_001018313.1| polypyrimidine tract binding protein 1a [Danio rerio]
gi|63100731|gb|AAH95372.1| Polypyrimidine tract binding protein 1a [Danio rerio]
Length = 574
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 127/235 (54%), Gaps = 39/235 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A M+SYY
Sbjct: 72 PSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKG--KNQAFLEMNTEESAQTMVSYY 129
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GNVLLVTIEGTDA 122
SS P +R +++QYSN +E+ N+ A A G + L I+G
Sbjct: 130 -SSVTPV-IRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGGMSLAAIDGAGM 187
Query: 123 -------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
R+ V++DVLH +FS FG V KI TF K FQALVQ+SD TA A
Sbjct: 188 GSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHA 247
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
K +LDG++I CTLRI++S T L+VK+ + +SRDYT P LP S
Sbjct: 248 KLSLDGQNIYN-------ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS 295
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 83/136 (61%), Gaps = 1/136 (0%)
Query: 220 APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
A +A+ G +DG + +S VL +EN+ Y VTLDVLH +FS FG V KI F
Sbjct: 168 AVNAVQTGGMSLAAIDGAGMGSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 227
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
KN QAL+QY D TA AK +L+G IY+ C L IS+S+ T L++K NND+SRDYT
Sbjct: 228 KNNQFQALVQYSDGMTAQHAKLSLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYT 286
Query: 340 LPSTPMVNSQPSILGQ 355
P P +SQPS Q
Sbjct: 287 RPDLPTGDSQPSFDAQ 302
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 29/221 (13%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ SD A A
Sbjct: 377 AGNSVLL-VSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKE--NALVQMSDGTQAQLA 433
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSA 223
+ L+G+ + G LR T S HT + + + H ++DY+N P+
Sbjct: 434 MSHLNGQKL--------YGKA-LRATLSKHTTVQLPREGHEDQGLTKDYSNS--PLHRFK 482
Query: 224 IDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
S S + P S+ L + N+ +VT D L +F + G V K F +
Sbjct: 483 KPGSKNYS------NIFPPSSTL--HLSNIPPSVTEDDLRGLFLSSGAVVKAFKFFQKDR 534
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ + H + G L +S+S+ T
Sbjct: 535 KMALIQLASVEEAIESLIKFHNHDL--GENHHLRVSFSKST 573
>gi|61403202|gb|AAH91854.1| Ptbp1b protein [Danio rerio]
Length = 586
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 127/235 (54%), Gaps = 39/235 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A M++YY
Sbjct: 91 PSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKG--KNQAFLEMNSEEAAQTMVTYY 148
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL----------VTIEGTD---- 121
SS P +R +++QYSN +E+ + + V L +T+ G D
Sbjct: 149 -SSVTPV-IRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSLTLGGVDPSGM 206
Query: 122 ------ARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
R+ V++DVLH +FS FG V K+ TF K FQAL+QF+D TA A
Sbjct: 207 TGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHA 266
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
K ALDG++I G CTLRI++S T L+VK+ + +SRDYT P LP S
Sbjct: 267 KLALDGQNIYN-------GCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS 314
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 220 APSAIDA--SGQLSVG-LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
A A++A +G L++G +D + S VL +EN+ Y VTLDVLH +FS FG V K+
Sbjct: 184 ALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVI 243
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 336
F KN QAL+Q+ D TA AK AL+G IY+ G C L IS+S+ T L++K NND+SR
Sbjct: 244 TFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYN-GCCTLRISFSKLTSLNVKYNNDKSR 302
Query: 337 DYTLPSTPMVNSQPSI 352
DYT P P +SQP++
Sbjct: 303 DYTRPDLPTGDSQPAL 318
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASS 166
+ G ++ + + V+ L ++F +G V ++ F K AL+Q SD A
Sbjct: 387 LTGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKE--NALIQMSDGTQAQL 444
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPS 222
A + L+G+ + Y P LRIT S HT + + + H ++DY+N P+
Sbjct: 445 AMSHLNGQKL--YGRP-------LRITLSKHTTVQMPREGHEDQGLTKDYSNS--PLHRF 493
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
S S + P S+ L + N+ +V D L ++F + G + K F +
Sbjct: 494 KKPGSKNYS------NIFPPSSTL--HLSNIPPSVVEDDLKLLFGSSGALVKNFKFFQKD 545
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ + H + G L +S+S+ T
Sbjct: 546 RKMALIQMSSVEEAIESLIQFHNHDL--GENHHLRVSFSKST 585
>gi|27806103|ref|NP_776867.1| polypyrimidine tract-binding protein 1 [Bos taurus]
gi|426229471|ref|XP_004008814.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Ovis
aries]
gi|75073578|sp|Q8WN55.1|PTBP1_BOVIN RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB
gi|17298537|gb|AAL38169.1|AF445640_1 polypyrimidine-tract binding protein [Bos taurus]
gi|296485353|tpg|DAA27468.1| TPA: polypyrimidine tract-binding protein 1 [Bos taurus]
Length = 531
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 184/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKVLFNKKE--NALVQMADGSQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 397 HKLHGK---PVRITLSKHQSVQL 416
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|357133525|ref|XP_003568375.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
[Brachypodium distachyon]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 175/344 (50%), Gaps = 54/344 (15%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E E +L++L +PFG V +K + +NQA ++ D++ +++ + YY
Sbjct: 5 SKVIHIRNVGHEIAEADLLQLLQPFGAV--SKIVMLRAKNQALLQMQDIHSSVSALQYY- 61
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSIDV 129
++ +P+ VRG+ +Y+Q+S+ QE+ ++++ + +LL TI ++++V
Sbjct: 62 TTVQPS-VRGRNIYMQFSSHQELTTDQSSHGRNSDQDSEPNRILLATIHHM-IYPITVEV 119
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VF A+G+V KI TF K+AGFQAL+Q+ + A A AL GR+I G C
Sbjct: 120 LHQVFKAYGYVEKIVTFNKSAGFQALIQYQSRQEAVEAFGALHGRNIYD-------GCCQ 172
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPV------------------------APSAID 225
L I YS ++L V + + RSRD+TNP LP AP A
Sbjct: 173 LDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRSSQQGYPDPGGLYAFQQPGAPYAQM 232
Query: 226 ASGQLSVGLDGKKLEP------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
+ G L P E L+ S N + D L +FS +G + +I +
Sbjct: 233 GRAAMIAAAFGGTLPPGVTGTNERCTLIVSNLNTD-KINEDKLFNLFSLYGNIVRIKVL- 290
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+N AL++ D A +A L+G ++ KL ++YS++
Sbjct: 291 RNKPDHALVEMADGFQAELAVHYLKGAMLFGN---KLEVNYSKY 331
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 114/238 (47%), Gaps = 50/238 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI A QAL+Q D ++ SA
Sbjct: 7 VIHIRNVGHEIAEADLLQLL-QPFGAVSKIVMLR--AKNQALLQMQDIHSSVSALQYYTT 63
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
++ GR+I + +S+H +L+ SH
Sbjct: 64 VQPSVRGRNI--------------YMQFSSHQELTTDQSSH------------------- 90
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + +LLA+I +M Y +T++VLH VF A+G V+KI F+K+ G QA
Sbjct: 91 ------GRNSDQDSEPNRILLATIHHMIYPITVEVLHQVFKAYGYVEKIVTFNKSAGFQA 144
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LIQY Q AV A AL G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 145 LIQYQSRQEAVEAFGALHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 201
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF-ADLNQA 68
+R+ P+K++H+ LP + +E+ ++ G VV TK + QA + F +
Sbjct: 359 YRHCCAPTKMIHISALPQDISEDTILTHVSEHGSVVGTKLFEVNGKRQALVLFETEEEAT 418
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +ASS E G T+ + +S Q I
Sbjct: 419 EALVSKHASSLE-----GNTIRISFSQMQSI 444
>gi|74196849|dbj|BAE43140.1| unnamed protein product [Mus musculus]
Length = 530
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 184/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAASRIAIPGLAGAGNSVL 338
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 339 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNG 395
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 396 HKLHGK---SVRITLSKHQSVQL 415
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 333 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 389
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 390 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 440
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 441 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 494
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 495 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 529
>gi|195575404|ref|XP_002105669.1| GD16206 [Drosophila simulans]
gi|194201596|gb|EDX15172.1| GD16206 [Drosophila simulans]
Length = 792
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 130/268 (48%), Gaps = 70/268 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 257 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 313
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 314 -TVNPPQMRGRMVYVQFSNHRELKTDQGHNNSITQSDYSAQSPASGSPLPLSAATNSTSN 372
Query: 99 --------------IVNNKTTADVAG-------NVLLVTIEGTDARLVSIDVLHLVFSAF 137
I+ N T+A AG N +L I + VS+DVLH +F +
Sbjct: 373 NANSSSDSNNSAMGILQNNTSAVNAGGNAAGGPNTVLRVIVESLMYPVSLDVLHQIFQRY 432
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197
G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 433 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSKL 485
Query: 198 TDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 486 TALNVKYNNDKSRDFTNPALPPGEPGVD 513
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 9/123 (7%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
SA++A G + G + VL +E++ Y V+LDVLH +F +G V KI F KN
Sbjct: 393 SAVNAGGNAAGG--------PNTVLRVIVESLMYPVSLDVLHQIFQRYGKVLKIVTFTKN 444
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
QALIQYPD +A AK L+G IY+ G C L I S+ T L++K NND+SRD+T P
Sbjct: 445 NSFQALIQYPDANSAQHAKSLLDGQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNP 503
Query: 342 STP 344
+ P
Sbjct: 504 ALP 506
>gi|413933762|gb|AFW68313.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
Length = 251
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 127/210 (60%), Gaps = 17/210 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V N+ Q ++ D++ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAESDLLQLLQPFGVVSKIVMLRAKNQAQTLLQMEDIHASVSALQYY 63
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
+S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVTI ++++
Sbjct: 64 -TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHM-IYPITVE 120
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I G C
Sbjct: 121 VLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYD-------GCC 173
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
L I YS ++L V + + RSRD+TNP LP
Sbjct: 174 QLDIQYSNLSELQVHYNNDRSRDFTNPSLP 203
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 109/238 (45%), Gaps = 48/238 (20%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN---- 169
++ I + D+L L+ FG V KI Q L+Q D + SA
Sbjct: 7 VIHIRNVGHEIAESDLLQLL-QPFGVVSKIVMLRAKNQAQTLLQMEDIHASVSALQYYTS 65
Query: 170 ---ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
++ GR++ + +S+H +L+ SH
Sbjct: 66 VQPSIRGRNV--------------YMQFSSHQELTTDQSSH------------------- 92
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + +LL +I +M Y +T++VLH VF A+G V+KI F K+ G QA
Sbjct: 93 ------GRNSDQESEPNRILLVTIHHMIYPITVEVLHQVFKAYGFVEKIVTFQKSAGFQA 146
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LIQ+ Q AV A +L G IYDG C+L I YS ++L + NNDRSRD+T PS P
Sbjct: 147 LIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNNDRSRDFTNPSLP 203
>gi|332255809|ref|XP_003277021.1| PREDICTED: polypyrimidine tract-binding protein 1 [Nomascus
leucogenys]
Length = 505
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 186/391 (47%), Gaps = 95/391 (24%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 22 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 79
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIV-----NNKTTADV-------AGN------- 111
M++YY S + P +RG+ +Y+Q+SN +E+ N + A + +GN
Sbjct: 80 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQRAQAALQAVNSVQSGNLALAASA 137
Query: 112 --------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
VL + +E V++DVLH +FS FG V KI TF K FQAL+Q
Sbjct: 138 AAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQ 196
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P L
Sbjct: 197 YADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDL 249
Query: 218 PVAPS--AID---------ASGQLSV----------------------------GLDGKK 238
P S ++D + LSV GL G
Sbjct: 250 PSGDSQPSLDQTMAAAFGKRTASLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAG-- 307
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAV 297
++VLL S N + VT L ++F +G VQ++ +F+K AL+Q D A
Sbjct: 308 --AGNSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQ 362
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
+A L GH ++ + I+ S+H ++ +
Sbjct: 363 LAMSHLNGHKLHGK---PIRITLSKHQNVQL 390
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 143 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 202
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 203 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 258
>gi|195354540|ref|XP_002043755.1| GM16408 [Drosophila sechellia]
gi|194128955|gb|EDW50998.1| GM16408 [Drosophila sechellia]
Length = 792
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 130/268 (48%), Gaps = 70/268 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 257 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 313
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 314 -TVNPPQMRGRMVYVQFSNHRELKTDQGHNNSITQSDYSAQSPASGSPLPLSAATNSTSN 372
Query: 99 --------------IVNNKTTADVAG-------NVLLVTIEGTDARLVSIDVLHLVFSAF 137
I+ N T+A AG N +L I + VS+DVLH +F +
Sbjct: 373 NANSSSDSNNSAMGILQNNTSAVNAGGNAAGGPNTVLRVIVESLMYPVSLDVLHQIFQRY 432
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197
G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 433 GKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSKL 485
Query: 198 TDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 486 TALNVKYNNDKSRDFTNPALPPGEPGVD 513
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 9/123 (7%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
SA++A G + G + VL +E++ Y V+LDVLH +F +G V KI F KN
Sbjct: 393 SAVNAGGNAAGG--------PNTVLRVIVESLMYPVSLDVLHQIFQRYGKVLKIVTFTKN 444
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
QALIQYPD +A AK L+G IY+ G C L I S+ T L++K NND+SRD+T P
Sbjct: 445 NSFQALIQYPDANSAQHAKSLLDGQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNP 503
Query: 342 STP 344
+ P
Sbjct: 504 ALP 506
>gi|255566638|ref|XP_002524303.1| polypyrimidine tract binding protein, putative [Ricinus communis]
gi|223536394|gb|EEF38043.1| polypyrimidine tract binding protein, putative [Ricinus communis]
Length = 437
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 177/340 (52%), Gaps = 47/340 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D+ AI + +Y
Sbjct: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDIPSAINALQFY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
+ +P +RG+ VY+Q+S+ QE+ N++ AD + + D + ++VLH
Sbjct: 62 GNV-QPT-IRGRNVYVQFSSHQELTTMDQNSQGRADEPFVLAVRFKSNFDGINIIVEVLH 119
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
VFS GFV KI TF+K+AGFQAL+Q+ ++A +A+ AL GR+I G C L
Sbjct: 120 QVFSPHGFVEKIVTFQKSAGFQALIQYQLRQSAVAARTALQGRNIYD-------GCCQLD 172
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS------------------------ 227
I +S +L V + + RSRD+TNP+LP +
Sbjct: 173 IQFSNLDELQVNYNNDRSRDFTNPHLPAEQKGRSSQAGYGDAGVAYPQMANAAAIAAAFG 232
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G L G+ G VL++++ + + D L +FS +G + +I + +N AL
Sbjct: 233 GGLPPGISGTN--DRCTVLVSNLNPDK--IDEDKLFNLFSLYGNIVRIKLL-RNKPDHAL 287
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 VQMGDGFQAELAVHFLKGAVLFGK---RLEVNFSKHPNIT 324
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
+ ++VLH VFS G V+KI F K+ G QALIQY Q+AV A+ AL+G IYDG C+L
Sbjct: 113 IIVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRQSAVAARTALQGRNIYDGC-CQL 171
Query: 317 HISYSRHTDLSIKVNNDRSRDYTLPSTP 344
I +S +L + NNDRSRD+T P P
Sbjct: 172 DIQFSNLDELQVNYNNDRSRDFTNPHLP 199
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 348 YRYCCSPTKMIHLSTLPQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVLFETEEQAT 407
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +A S V G + + +S Q I
Sbjct: 408 EALVCKHAIS-----VAGSIIRISFSQLQSI 433
>gi|224089408|ref|XP_002188238.1| PREDICTED: polypyrimidine tract-binding protein 3 [Taeniopygia
guttata]
Length = 488
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 171/347 (49%), Gaps = 66/347 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R +P E T E++ LG PFGKV N G + QAF+E A ++ A++M++YY
Sbjct: 24 PSRVLHIRQIPNEVTGAEVVSLGLPFGKVTNLLMLRG--KGQAFLEMASIDAAVSMVNYY 81
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV-----------------------NNKTTADVAGNV 112
A ++ + + VY+QYS +E+ N T+ +A
Sbjct: 82 APAT--PHLHHQPVYIQYSKYKELRTDNQHNQAKPQPAPQCVNAVQQGNRDITSALAAEC 139
Query: 113 LLVTIEGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
++ G+ R+ V++D+L+ +FS FGFV +I F K FQ+L+Q+SD A
Sbjct: 140 GVLPRHGSVLRIIVENVFYPVTLDILYQIFSKFGFVLRIIMFHKNNQFQSLLQYSDAMNA 199
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN---PY----- 216
AK +LDG I G CTLRI +S +L+VK+ + +SRD+T P+
Sbjct: 200 YYAKMSLDGHCI-------YTGCCTLRIEFSKLANLTVKYNNDKSRDFTRIDLPFGDGQR 252
Query: 217 -----LPVAPSAIDASGQL------SVGLDGKKLEPE---SNVLLASIENMQYAVTLDVL 262
+P PS + G L + G P+ ++VLL S N + A+T L
Sbjct: 253 TVETSIPFGPSVLPVPGALGPLMVTTSAAPGHMTIPDIPGNSVLLVSNLNPE-AITPYGL 311
Query: 263 HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++F +G V ++ + K G+ AL+Q D A +A L G +Y
Sbjct: 312 FILFGVYGDVHRVKIMFKKRGI-ALVQMADATQAQLAINYLNGQRLY 357
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
+VL +EN+ Y VTLD+L+ +FS FG V +I MF KN Q+L+QY D A AK +L
Sbjct: 147 SVLRIIVENVFYPVTLDILYQIFSKFGFVLRIIMFHKNNQFQSLLQYSDAMNAYYAKMSL 206
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI-----LGQQPV 358
+GHCIY G C L I +S+ +L++K NND+SRD+T P + Q ++ G +
Sbjct: 207 DGHCIYTGC-CTLRIEFSKLANLTVKYNNDKSRDFTRIDLPFGDGQRTVETSIPFGPSVL 265
Query: 359 PMVGA 363
P+ GA
Sbjct: 266 PVPGA 270
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 21/220 (9%)
Query: 104 TTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
T D+ GN +L+ + + ++ L ++F +G VH++ K G ALVQ +D
Sbjct: 286 TIPDIPGNSVLL-VSNLNPEAITPYGLFILFGVYGDVHRVKIMFKKRGI-ALVQMADATQ 343
Query: 164 ASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
A A N L+G+ + ++ + T+++ D + ++DY+N L +
Sbjct: 344 AQLAINYLNGQRLYGRVMHATLSKYQTIQLPREGQEDKGL------TKDYSNSPLHRFKN 397
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
+ Q + P S L + N+ + T+D L +F++ G K F +
Sbjct: 398 PCSKNFQ--------NIFPPSATL--HLSNIPSSATVDDLKNLFTSKGSTVKGFKFFQKD 447
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
ALIQ V+ AV A L H G L +S+S+
Sbjct: 448 CKMALIQLGSVEEAVHALIELHNHDF--GENQHLRVSFSK 485
>gi|330840158|ref|XP_003292087.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
gi|325077693|gb|EGC31389.1| hypothetical protein DICPUDRAFT_82723 [Dictyostelium purpureum]
Length = 748
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 123/208 (59%), Gaps = 16/208 (7%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+ Q PSKV+HLRNLP +CTE+E+I L +PFG + N G ++QA ++ ++
Sbjct: 163 SKKQKNLVHTPSKVVHLRNLPPDCTEQEIISLIEPFGAIENMIIIKG--KSQALVQMVEI 220
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+ AI+ I YY + +R KT+Y Q+SNR+EI K T + +LL+TI V
Sbjct: 221 SSAISFIQYYTTVQ--GSIRSKTIYTQFSNRKEISPAKETPNC---ILLITINNYLYN-V 274
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+I+ L+ VFS FG V+K+ F K+ +Q+L++ E A AKN LDG +I
Sbjct: 275 TIEELYKVFSNFGTVNKVLLFTKSGNYQSLIEMKTPEEAVKAKNNLDGMNIN-------- 326
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYT 213
C+L+I +S+ T L +K+ + +SRD+T
Sbjct: 327 NTCSLKIQFSSLTSLKIKYNNEKSRDFT 354
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
+LL +I N Y VT++ L+ VFS FG V K+ +F K+G Q+LI+ + AV AK L+
Sbjct: 262 ILLITINNYLYNVTIEELYKVFSNFGTVNKVLLFTKSGNYQSLIEMKTPEEAVKAKNNLD 321
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
G I C L I +S T L IK NN++SRD+T+
Sbjct: 322 GMNI--NNTCSLKIQFSSLTSLKIKYNNEKSRDFTV 355
>gi|417402381|gb|JAA48040.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 531
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 183/383 (47%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GN------ 111
M++YY S + P +RG+ +Y+Q+SN +E+ N+ A A GN
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALHAVNSVQSGNLALAAS 167
Query: 112 ---------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q+++ +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYAEPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 397 HKLHGK---PVRITLSKHQNVQL 416
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY + +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|347970969|ref|XP_318405.4| AGAP003945-PA [Anopheles gambiae str. PEST]
gi|333469570|gb|EAA13599.5| AGAP003945-PA [Anopheles gambiae str. PEST]
Length = 601
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 131/254 (51%), Gaps = 63/254 (24%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+P E +E E+++LG PFG+V N G +NQAFIE D A M+S +
Sbjct: 71 SRVVHIRNIPNEVSEAEIMQLGLPFGRVTNVLVLKG--KNQAFIEMGDETAASTMVSVFH 128
Query: 77 SSSEPAQVRGKTVYLQYSNRQEI---------VNNKTTADVAGNVLLVTIE--------- 118
++ P +RG+TVY+QYSN +E+ V T G+ L ++IE
Sbjct: 129 ANPPP--LRGRTVYVQYSNHRELKIDQNHAIAVTQDLTQSPTGSPLPLSIEHTNSNSQNA 186
Query: 119 --------------------------GTDARL--------VSIDVLHLVFSAFGFVHKIT 144
T R+ VS+DVLH +F FG V KI
Sbjct: 187 SSNNTNNSSTTPSSGGGGGGGGSGAPNTVLRVIVESLLYPVSLDVLHQIFQRFGKVLKIV 246
Query: 145 TFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKF 204
TF K FQAL+Q+ D +TA +A+ +LDG++I G CTLRI S T L+VK+
Sbjct: 247 TFTKNNSFQALIQYPDAQTAQTARASLDGQNIYN-------GCCTLRIDNSKLTALNVKY 299
Query: 205 QSHRSRDYTNPYLP 218
+ +SRDYTNP LP
Sbjct: 300 NNDKSRDYTNPSLP 313
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LDVLH +F FG V KI F KN QALIQYPD QTA A+ +L+
Sbjct: 215 VLRVIVESLLYPVSLDVLHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAQTAQTARASLD 274
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRDYT PS P
Sbjct: 275 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDYTNPSLP 313
>gi|348550210|ref|XP_003460925.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Cavia porcellus]
Length = 557
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSTGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY +S P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYY--TSVPPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K + FQAL+
Sbjct: 168 AAAVDAGLAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GLAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIISASPYAGAGFPP 315
>gi|223647466|gb|ACN10491.1| Polypyrimidine tract-binding protein 2 [Salmo salar]
Length = 540
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 179/411 (43%), Gaps = 96/411 (23%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PPS+VLH+R LP E +E E+I LG PFGKV N G +NQAF+E A+
Sbjct: 45 RMESPPSRVLHIRKLPSEVSETEVIALGLPFGKVTNILMLKG--KNQAFLELGTEEAAVT 102
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA-------- 122
M++YY ++ QVR V++Q+SN +E+ + T A VL D
Sbjct: 103 MVNYY--TAVMPQVRNVPVFIQFSNHKELKTDSTLNQRAQAVLQAVSAVQDGGSPNSDNS 160
Query: 123 --------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD 160
R+ V++DVL +FS FG V KI TF K FQAL+QFS+
Sbjct: 161 TLDSVLAHAPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSE 220
Query: 161 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV- 219
A A+ +LDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 221 PVNAQQARLSLDGQNIYNSC-------CTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAG 273
Query: 220 ----------------------------APSAIDASGQLSVGLDGKKLEPE--------- 242
AP + Q S+ G + P
Sbjct: 274 DGQPAVDPAMAAAYNKDSSLLGTPSGMGAPYSNGGGFQSSLSQGGGAINPMSAAAAAAAA 333
Query: 243 ------------SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
S VLL S N + VT L +F +G Q++ + N ALIQ
Sbjct: 334 AGRMALSGHSGCSGVLLVSNLN-EEMVTPQSLFTLFGVYGDAQRVKIL-YNKKDSALIQM 391
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR--SRDYT 339
D A +A L G +Y G ++ +S + L + +D+ ++D+T
Sbjct: 392 SDGNQAQLAMSHLNGQKMY-GKIIRVTLSKHQAVQLPREGLDDQGLTKDFT 441
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL I+NM Y VTLDVL +FS FG V KI F KN QAL+Q+ + A A+ +L+
Sbjct: 173 VLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSEPVNAQQARLSLD 232
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 233 GQNIYN-SCCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAV 279
>gi|449441197|ref|XP_004138369.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 1 [Cucumis sativus]
Length = 434
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 178/342 (52%), Gaps = 50/342 (14%)
Query: 16 PSKVLHLRN--LPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
PSKV+H+RN L ++ +L++L +PFG + TK + +NQA ++ D+ A+ +
Sbjct: 4 PSKVIHVRNVGLSLSLSQNDLLQLFQPFGVI--TKLVMLRAKNQALMQMQDVPSAVNALQ 61
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDV 129
++A+ +P+ +RG+ VY+Q+S+ QE+ N + D +LLVTI ++++V
Sbjct: 62 FFANL-QPS-IRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHM-LYPITVEV 118
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
LH VF GFV KI TF+K+AGFQAL+Q+ + A SA+ AL GR+I G C
Sbjct: 119 LHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYD-------GCCQ 171
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA----------------------- 226
L I +S +L V + + RSRD+TNP LP P +
Sbjct: 172 LDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYPQMANAAAVAAA 231
Query: 227 -SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G L G+ G VL++++ + + D L +FS +G + +I + +N
Sbjct: 232 FGGGLPPGVSGTN--DRCTVLVSNLNPDR--IDEDKLFNLFSIYGNIVRIKLL-RNKPDH 286
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
AL+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 ALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 325
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 125/257 (48%), Gaps = 44/257 (17%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
V+ V G L D+L L F FG + K+ A QAL+Q D SA NAL
Sbjct: 7 VIHVRNVGLSLSLSQNDLLQL-FQPFGVITKLVMLR--AKNQALMQMQD---VPSAVNAL 60
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
N+ P ++R ++ V+F SH+ + D + Q
Sbjct: 61 Q--------FFANLQP-SIR-----GRNVYVQFSSHQEL-----------TTADQNAQ-- 93
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G+ EP + +LL +I +M Y +T++VLH VF G V+KI F K+ G QALIQY
Sbjct: 94 ----GRGDEP-NRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQ 148
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
Q AV A+ AL+G IYDG C+L I +S +L + NN+RSRD+T PS P S+P
Sbjct: 149 TRQCAVSARTALQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPSLP---SEPK 204
Query: 352 ILGQQPVPMVGATANQY 368
G+ P G T Y
Sbjct: 205 --GRSSQPGYGDTGGMY 219
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +L E TEEE++ L + G +VN+K + QA I F QA
Sbjct: 349 YRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQAT 408
Query: 70 -AMISYYASSSEPAQVR 85
A++ +AS + +R
Sbjct: 409 EALVCKHASLLSGSIIR 425
>gi|395514526|ref|XP_003761466.1| PREDICTED: polypyrimidine tract-binding protein 3 [Sarcophilus
harrisii]
Length = 505
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/353 (32%), Positives = 170/353 (48%), Gaps = 73/353 (20%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A A+ M++YY
Sbjct: 36 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMVNYY 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLLVTIEGTDA 122
+ +R + VY+QYSN +E+ + A +G++ L +G +
Sbjct: 94 TPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLALPAAQGNEG 151
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
+ VS++VL+ +FS FG V +I TF K FQAL+Q++D A
Sbjct: 152 GVLPGQSPVLRIIVENLFYPVSLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNA 211
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA---- 220
AK ALDG++I CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 212 HYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQP 264
Query: 221 --------------PSAIDASGQLSV---------GLDGKKLEPESNVLLASIENMQYAV 257
P+ A G L++ + G P ++VLL S N A+
Sbjct: 265 SIDPTMAAAFGLSVPAVPGALGPLTITTSAVTGRMAIPGVPGVPGNSVLLVSNLNPD-AI 323
Query: 258 TLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
T L ++F +G VQ++ MF+K AL+Q D A +A L G +Y
Sbjct: 324 TPHGLFILFGVYGDVQRVKIMFNKKE--NALVQMADANQAQLAINHLSGQRLY 374
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG L++ G +G L +S VL +EN+ Y V+L+VL+ +FS FG V +I F KN
Sbjct: 138 SGSLALPAAQGNEGGVLPGQSPVLRIIVENLFYPVSLEVLYQIFSKFGTVLRIITFTKNN 197
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 198 QFQALLQYADPLNAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 256
Query: 343 TPMVNSQPSI 352
P + QPSI
Sbjct: 257 LPSGDGQPSI 266
>gi|294460075|gb|ADE75620.1| unknown [Picea sitchensis]
Length = 471
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 182/369 (49%), Gaps = 78/369 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH+RN+ E +E +L+ L + FG V TK + +NQA ++ ++ AI + YY
Sbjct: 4 PSKVLHIRNVGHEISENDLLNLVQQFGLV--TKLVMLRAKNQALLQMHHVSAAIDALQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI--VNNKTTADVAGN-------VLLVTIEGTDARLVS 126
S+ +P+ VRG+ VY+Q+S+ QE+ V + T A +G+ +LLVTI ++
Sbjct: 62 -STVQPS-VRGRNVYIQFSSHQELTTVEHPTHARQSGDQDSQPNRILLVTIHHL-LFPIT 118
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
++VLH VFS GFV KI TF+K+AG QAL+Q++ + A AKN L GR+I G
Sbjct: 119 VEVLHQVFSPCGFVEKIVTFQKSAGLQALIQYTSQQNAVQAKNNLQGRNIYD-------G 171
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV-----------APSAIDASG------- 228
C L I +S L V + + RSRD+TNP LP A SA +G
Sbjct: 172 CCQLDIQFSNLNGLQVHYINERSRDFTNPSLPSEQKDRIPAQANAMSAFGGTGSIYGIQP 231
Query: 229 ---------------------QLSVGLD-------GKKLEP------ESNVLLASIENMQ 254
Q+ VG G L P + +L S N +
Sbjct: 232 TGSRPVPFQQVGAQPMVLNSLQMPVGTAAAIAAAFGGMLPPGITGTNDRCTILVSNLNTE 291
Query: 255 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314
+ D L +FS +G + +I + +N ALIQ D A +A L+G ++D
Sbjct: 292 -KIDEDKLFNLFSVYGNIMRIKIL-RNKPDHALIQMGDGFQAELAVHYLKGAMLFDK--- 346
Query: 315 KLHISYSRH 323
++ ++YS+H
Sbjct: 347 RMEVNYSKH 355
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
+LL +I ++ + +T++VLH VFS G V+KI F K+ GLQALIQY Q AV AK L+
Sbjct: 105 ILLVTIHHLLFPITVEVLHQVFSPCGFVEKIVTFQKSAGLQALIQYTSQQNAVQAKNNLQ 164
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IYDG C+L I +S L + N+RSRD+T PS P
Sbjct: 165 GRNIYDGC-CQLDIQFSNLNGLQVHYINERSRDFTNPSLP 203
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +LP + TE+E+I +P G VV++K + QA + F + Q+
Sbjct: 383 YRYCCAPTKMIHVSSLPPDVTEDEIISHLEPHGNVVDSKLFEVNGKKQALVLFENEEQST 442
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +A++ + G T+ + +S Q I
Sbjct: 443 EALVSKHATT-----IDGSTIRISFSQLQSI 468
>gi|363744882|ref|XP_424912.3| PREDICTED: regulator of differentiation 1 [Gallus gallus]
Length = 552
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 191/394 (48%), Gaps = 86/394 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P TE ++I LG PFGKV N G ++QAF+E A A++M++Y
Sbjct: 75 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRG--KSQAFLEMASEENAVSMVNY- 131
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNN----KTTADVA---------GNVLLVTIEGTDA 122
S++ P + + VY+QYSN +E+ + + +A A GNV + + ++
Sbjct: 132 CSTAIP-HIHNQPVYVQYSNHRELKTDSLPSQASAQAALQVVNTVQCGNVGVTSTFAAES 190
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
L VS++VL+ +FS FGFV KI TF + FQAL+Q+++ A
Sbjct: 191 GLPPGHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNA 250
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA---- 220
AK AL+GR+I CTL I +S T L VK+ + +SRD+T LP A
Sbjct: 251 YYAKMALNGRNIYN-------ACCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPAADGQL 303
Query: 221 ---PSAIDASG------QLSVGLDG----------------------KKLEPESNVLLAS 249
P+ I A G Q VG G P ++VLL S
Sbjct: 304 PLDPAIIAAFGSQGIIFQPYVGTGGIGPVTYFPQGAVTTSVASVRMSNPGVPGNSVLLVS 363
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
N + A+T L ++F A+G V ++ + KN AL+Q D A +A L G +Y
Sbjct: 364 NLNPE-AITPHGLFILFGAYGDVLRVKIMFKNKE-NALVQMADATQAQIAISNLNGQKLY 421
Query: 310 DGGFCKLHISYSRHTDLSI----KVNNDRSRDYT 339
G F + + S+H ++ + + +N ++DY+
Sbjct: 422 -GKFIR--ATLSKHQNIQLPREGEEDNGLTKDYS 452
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 93/191 (48%), Gaps = 33/191 (17%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
S+VL IEN+ Y V+L+VL+ +FS FG V KI F +N QALIQY + A AK A
Sbjct: 197 SSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAYYAKMA 256
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV--PM 360
L G IY+ C LHI +S+ T L +K NN++SRD+T P + GQ P+ +
Sbjct: 257 LNGRNIYNAC-CTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPAAD------GQLPLDPAI 309
Query: 361 VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPG 420
+ A +Q G F P G G + P + Y P G++
Sbjct: 310 IAAFGSQ--GIIFQP------------YVGTGGIGPVT----------YFPQGAVTTSVA 345
Query: 421 MMQMHMPGQSG 431
++M PG G
Sbjct: 346 SVRMSNPGVPG 356
>gi|386766857|ref|NP_001247399.1| hephaestus, isoform Y [Drosophila melanogaster]
gi|383293058|gb|AFH06716.1| hephaestus, isoform Y [Drosophila melanogaster]
Length = 898
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 367 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 424
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 425 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 482
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 483 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 541
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 542 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 594
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 595 LTALNVKYNNDKSRDFTNPALPPGEPGVD 623
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 518 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 577
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 578 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 616
>gi|28571965|ref|NP_788780.1| hephaestus, isoform H [Drosophila melanogaster]
gi|281362946|ref|NP_001163787.1| hephaestus, isoform O [Drosophila melanogaster]
gi|281362952|ref|NP_001163790.1| hephaestus, isoform R [Drosophila melanogaster]
gi|16303586|gb|AAL14775.1| hephaestus [Drosophila melanogaster]
gi|28381533|gb|AAO41627.1| hephaestus, isoform H [Drosophila melanogaster]
gi|157816746|gb|ABV82366.1| LD04329p [Drosophila melanogaster]
gi|272477264|gb|ACZ95080.1| hephaestus, isoform O [Drosophila melanogaster]
gi|272477267|gb|ACZ95083.1| hephaestus, isoform R [Drosophila melanogaster]
Length = 789
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 254 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 311
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 312 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 369
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 370 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 428
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 429 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 481
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 482 LTALNVKYNNDKSRDFTNPALPPGEPGVD 510
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 405 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 464
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 465 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 503
>gi|19911240|dbj|BAB86943.1| polypirimidine tract binding protein [Mus musculus]
Length = 528
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 82/382 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAAST 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPNYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLR+ +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRVDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE---------------------------PESNVLL 247
LP S ++D + + GL + ++VLL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLL 338
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L GH
Sbjct: 339 VSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNGH 395
Query: 307 CIYDGGFCKLHISYSRHTDLSI 328
++ + I+ S+H + +
Sbjct: 396 KLHGK---SVRITLSKHQSVQL 414
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L + +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRVDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 30/221 (13%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 332 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 388
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 389 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 439
Query: 228 GQLSVGLDGKKLEPESNVLLAS----IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
G + N+ L S + N+ +V+ D L +FS+ G V K F +
Sbjct: 440 GSKNF----------QNIFLPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDR 489
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ AV A L H D G L +S+S+ T
Sbjct: 490 KMALIQMGSVEEAVQALIELHNH---DLGEHHLRVSFSKST 527
>gi|432936644|ref|XP_004082208.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oryzias
latipes]
Length = 577
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 124/240 (51%), Gaps = 44/240 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+EF A M+SYY
Sbjct: 71 PSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKG--KNQAFLEFGSEECAQTMVSYY 128
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL-------------VTIEGTDA 122
SS P +R +Y+QYS +E+ + + V L + I A
Sbjct: 129 -SSVTPV-IRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGSGMGSMAISAEAA 186
Query: 123 RL--------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
+ V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 187 SMGGAASQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAM 246
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
TA AK +LDG++I CTLRI++S T L+VK+ + +SRDYT P LP A S
Sbjct: 247 TAQHAKLSLDGQNIYN-------ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADS 299
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 85/142 (59%), Gaps = 11/142 (7%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QALIQY D TA AK
Sbjct: 194 QSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQHAKL 253
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L IS+S+ T L++K NND+SRDYT P P +SQPS+ Q M
Sbjct: 254 SLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSLDHQ---AMA 309
Query: 362 GA-------TANQYNGAQFAPP 376
A +A+ Y GA PP
Sbjct: 310 AAAFGPGIISASPYGGAHAFPP 331
>gi|74178228|dbj|BAE29899.1| unnamed protein product [Mus musculus]
Length = 529
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 82/382 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +L G++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLGGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE---------------------------PESNVLL 247
LP S ++D + + GL + ++VLL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLL 338
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L GH
Sbjct: 339 VSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLAMSHLNGH 395
Query: 307 CIYDGGFCKLHISYSRHTDLSI 328
++ + I+ S+H + +
Sbjct: 396 KLHGK---SVRITLSKHQSVQL 414
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLGGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 38.1 bits (87), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 332 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 388
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 389 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 439
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 440 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 493
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 494 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 528
>gi|386766855|ref|NP_001247398.1| hephaestus, isoform W [Drosophila melanogaster]
gi|383293057|gb|AFH06715.1| hephaestus, isoform W [Drosophila melanogaster]
Length = 799
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 268 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 325
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 326 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 383
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 384 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 442
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 443 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 495
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 496 LTALNVKYNNDKSRDFTNPALPPGEPGVD 524
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 419 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 478
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 479 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 517
>gi|24651780|ref|NP_733460.1| hephaestus, isoform B [Drosophila melanogaster]
gi|28571963|ref|NP_733461.2| hephaestus, isoform A [Drosophila melanogaster]
gi|28571967|ref|NP_788773.1| hephaestus, isoform D [Drosophila melanogaster]
gi|28571969|ref|NP_788774.1| hephaestus, isoform E [Drosophila melanogaster]
gi|28571971|ref|NP_788777.1| hephaestus, isoform I [Drosophila melanogaster]
gi|28571973|ref|NP_788778.1| hephaestus, isoform J [Drosophila melanogaster]
gi|28571975|ref|NP_788779.1| hephaestus, isoform K [Drosophila melanogaster]
gi|28571979|ref|NP_788775.1| hephaestus, isoform F [Drosophila melanogaster]
gi|161079548|ref|NP_001097994.1| hephaestus, isoform N [Drosophila melanogaster]
gi|281362948|ref|NP_001163788.1| hephaestus, isoform P [Drosophila melanogaster]
gi|281362960|ref|NP_001163794.1| hephaestus, isoform V [Drosophila melanogaster]
gi|18042167|gb|AAL57860.1|AF455053_1 hephaestus [Drosophila melanogaster]
gi|23172813|gb|AAF57208.2| hephaestus, isoform B [Drosophila melanogaster]
gi|28381525|gb|AAN14297.2| hephaestus, isoform A [Drosophila melanogaster]
gi|28381526|gb|AAO41620.1| hephaestus, isoform D [Drosophila melanogaster]
gi|28381527|gb|AAO41621.1| hephaestus, isoform E [Drosophila melanogaster]
gi|28381528|gb|AAO41622.1| hephaestus, isoform F [Drosophila melanogaster]
gi|28381530|gb|AAO41624.1| hephaestus, isoform I [Drosophila melanogaster]
gi|28381531|gb|AAO41625.1| hephaestus, isoform J [Drosophila melanogaster]
gi|28381532|gb|AAO41626.1| hephaestus, isoform K [Drosophila melanogaster]
gi|158030462|gb|ABW08818.1| hephaestus, isoform N [Drosophila melanogaster]
gi|189182140|gb|ACD81846.1| LD11808p [Drosophila melanogaster]
gi|272477265|gb|ACZ95081.1| hephaestus, isoform P [Drosophila melanogaster]
gi|272477271|gb|ACZ95087.1| hephaestus, isoform V [Drosophila melanogaster]
Length = 608
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 73 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 130
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 131 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 188
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 189 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 247
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 248 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 300
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 301 LTALNVKYNNDKSRDFTNPALPPGEPGVD 329
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 224 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 283
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 284 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 322
>gi|17861972|gb|AAL39463.1| LD03185p [Drosophila melanogaster]
Length = 571
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 73 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 130
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 131 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 188
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 189 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 247
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 248 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 300
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 301 LTALNVKYNNDKSRDFTNPALPPGEPGVD 329
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 224 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 283
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 284 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 322
>gi|357497747|ref|XP_003619162.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355494177|gb|AES75380.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 354
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 127/205 (61%), Gaps = 15/205 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E +E +L++L +PFG V TK + +NQA ++ D+ A + I +Y
Sbjct: 5 SKVIHVRNVGHEISENDLLQLFQPFGVV--TKLVMLRAKNQALVQMQDVASADSAIQFYI 62
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGNVLLVTIEGTDARLVSIDVLHLV 133
+S +P+ +RG+ VY+Q+S+ +E+ N+ D +LLVT+ +++DVL V
Sbjct: 63 NS-QPS-IRGRNVYVQFSSHRELTTMDQNQGREDEPNRILLVTVHQV-LYPMTVDVLQQV 119
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
FS GFV KI TF+K+AGFQAL+Q+ ++A +A+ AL GR++ G C L I
Sbjct: 120 FSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRNVYD-------GCCQLDIQ 172
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLP 218
+S +L V + + RSRD+TNP LP
Sbjct: 173 FSNLDELQVNYNNDRSRDFTNPNLP 197
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 40/217 (18%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG V K+ A QALVQ D +A SA I Y+ N P
Sbjct: 21 DLLQL-FQPFGVVTKLVMLR--AKNQALVQMQDVASADSA--------IQFYI---NSQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
++ V+F SHR + +D + G++ EP + +LL
Sbjct: 67 SI------RGRNVYVQFSSHRE-----------LTTMDQN-------QGREDEP-NRILL 101
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
++ + Y +T+DVL VFS G V+KI F K+ G QALIQY Q+AV A+ AL+G
Sbjct: 102 VTVHQVLYPMTVDVLQQVFSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRN 161
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+YD G C+L I +S +L + NNDRSRD+T P+ P
Sbjct: 162 VYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 197
>gi|291227384|ref|XP_002733659.1| PREDICTED: polypyrimidine tract-binding protein 1-like
[Saccoglossus kowalevskii]
Length = 558
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 122/230 (53%), Gaps = 39/230 (16%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ + TE E+I LG PFG+V N G ++QAF+E + A M++YY
Sbjct: 68 SRVVHIRNVVADATESEIIALGVPFGRVTNILLLKG--KSQAFLEMENETAATTMVNYY- 124
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTT--------------------------ADVAG 110
S A +RG+ VY+Q+SN +E+ D G
Sbjct: 125 -SHVTANIRGRPVYVQFSNHKELKTENAPAQQTAAAQAALAAAQSLMPQTLGVHPGDTLG 183
Query: 111 --NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
N +L I V++D+LH +FS FG V KI TF K FQAL+QF+D +A ++K
Sbjct: 184 GQNTVLRVIVENMLYPVTVDILHQIFSKFGAVLKIITFNKNNTFQALIQFADAVSAQASK 243
Query: 169 NALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+LDG++I CTLRI YS T L+VK+ + +SRDYT P LP
Sbjct: 244 LSLDGQNIYN-------ACCTLRIDYSKLTTLNVKYNNDKSRDYTRPDLP 286
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G L ++ VL +ENM Y VT+D+LH +FS FG V KI F+KN QALIQ+ D +
Sbjct: 179 GDTLGGQNTVLRVIVENMLYPVTVDILHQIFSKFGAVLKIITFNKNNTFQALIQFADAVS 238
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A +K +L+G IY+ C L I YS+ T L++K NND+SRDYT P P + QP +
Sbjct: 239 AQASKLSLDGQNIYN-ACCTLRIDYSKLTTLNVKYNNDKSRDYTRPDLPSGDGQPPL--- 294
Query: 356 QPVPMVGATANQYNGAQFAPPPPE----QPMMHQPTAAGWGAVPPASQSMPMMGNH 407
P G N A P P P AG+GA P M M H
Sbjct: 295 DPAMAFG------NAAPGMLPTPNAAAMGAAFANPALAGYGATVPGLPGMYSMPTH 344
>gi|161079541|ref|NP_001097992.1| hephaestus, isoform L [Drosophila melanogaster]
gi|158030460|gb|ABW08816.1| hephaestus, isoform L [Drosophila melanogaster]
Length = 622
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 87 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 144
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 145 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 202
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 203 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 261
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 262 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 314
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 315 LTALNVKYNNDKSRDFTNPALPPGEPGVD 343
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 238 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 297
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 298 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 336
>gi|45552115|ref|NP_788776.2| hephaestus, isoform G [Drosophila melanogaster]
gi|45446737|gb|AAO41623.2| hephaestus, isoform G [Drosophila melanogaster]
Length = 615
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 80 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 137
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 138 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 195
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 196 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 254
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 255 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 307
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 308 LTALNVKYNNDKSRDFTNPALPPGEPGVD 336
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 231 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 290
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 291 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 329
>gi|17864284|ref|NP_524703.1| hephaestus, isoform C [Drosophila melanogaster]
gi|281362954|ref|NP_001163791.1| hephaestus, isoform S [Drosophila melanogaster]
gi|281362956|ref|NP_001163792.1| hephaestus, isoform T [Drosophila melanogaster]
gi|281362958|ref|NP_001163793.1| hephaestus, isoform U [Drosophila melanogaster]
gi|6665714|gb|AAF22979.1|AF211191_1 polypyrimidine tract binding protein [Drosophila melanogaster]
gi|23172814|gb|AAN14296.1| hephaestus, isoform C [Drosophila melanogaster]
gi|272477268|gb|ACZ95084.1| hephaestus, isoform S [Drosophila melanogaster]
gi|272477269|gb|ACZ95085.1| hephaestus, isoform T [Drosophila melanogaster]
gi|272477270|gb|ACZ95086.1| hephaestus, isoform U [Drosophila melanogaster]
Length = 581
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 46 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 103
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 104 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 161
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 162 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 220
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 221 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 273
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 274 LTALNVKYNNDKSRDFTNPALPPGEPGVD 302
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 197 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 256
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 257 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 295
>gi|157137151|ref|XP_001663911.1| polypyrimidine tract binding protein [Aedes aegypti]
gi|108869791|gb|EAT34016.1| AAEL013723-PA [Aedes aegypti]
Length = 539
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 136/271 (50%), Gaps = 66/271 (24%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E +E +++ LG PFG+V N G +NQAF+E AD A +M++ +
Sbjct: 13 PSRVVHIRNIPNESSEVDVMHLGVPFGRVTNVLVLKG--KNQAFLEMADETAATSMVTMF 70
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA------------- 122
++ P VRG+TVY+Q+SN +E+ ++ A NV L T + T +
Sbjct: 71 TAT--PPIVRGRTVYVQFSNHRELKTDQN--HTATNVTLQTQDLTQSPTGSPLPLALDHA 126
Query: 123 ----------------------------RL--------VSIDVLHLVFSAFGFVHKITTF 146
R+ VS+D+L+ +F FG V KI TF
Sbjct: 127 NTNSNPGTGTVGGTLGGATTQGGPNTVLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTF 186
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q+ D TA AK LDG++I G CTLRI S T L+VK+ +
Sbjct: 187 TKNNSFQALIQYPDAATAQLAKQTLDGQNIYN-------GCCTLRIDNSKLTSLNVKYNN 239
Query: 207 HRSRDYTNPYLPVAPSAID----ASGQLSVG 233
+SRDYTNP LP D A G +S G
Sbjct: 240 DKSRDYTNPTLPSGEPGSDVIASAGGLVSAG 270
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+L+ +F FG V KI F KN QALIQYPD TA +AK+ L+
Sbjct: 153 VLRVIVESLLYPVSLDILYQIFQRFGKVLKIVTFTKNNSFQALIQYPDAATAQLAKQTLD 212
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRDYT P+ P
Sbjct: 213 GQNIYN-GCCTLRIDNSKLTSLNVKYNNDKSRDYTNPTLP 251
>gi|125827109|ref|XP_001335967.1| PREDICTED: regulator of differentiation 1 [Danio rerio]
Length = 522
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 128/235 (54%), Gaps = 43/235 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R +P E +E E++ LG PFGKV N G +NQAFIE A A+ M++YY
Sbjct: 27 PSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKG--KNQAFIEMASEEAAMTMVNYY 84
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GNVLLV-TIEGTD 121
+++ VR + VY+QYSN +E+ N+ A A GN+ L T +D
Sbjct: 85 TTAT--PHVRNQPVYIQYSNHRELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATASD 142
Query: 122 ARL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
+ VS++VLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 143 GGMMPGQSPVLRIIVENLYYPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMN 202
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
A AK ALDG++I G CTLR+ +S T L+VK+ + +SRD+T LP
Sbjct: 203 AHHAKVALDGQNIYN-------GCCTLRVEFSKLTSLNVKYNNDKSRDFTRLDLP 250
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 146/313 (46%), Gaps = 48/313 (15%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGF-QALVQFSDTETASSAKN 169
+V V IE ++A +VS+ V FG K+T G QA ++ + E A + N
Sbjct: 32 HVRKVPIEVSEAEVVSLGV------PFG---KVTNLLMLKGKNQAFIEMASEEAAMTMVN 82
Query: 170 ALDG-----RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 224
R+ P Y I YS H +L ++ R A A+
Sbjct: 83 YYTTATPHVRNQPVY------------IQYSNHRELKTDNLPNQGR------AQAALQAV 124
Query: 225 DA--SGQLSV-----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
+A +G +S+ DG + +S VL +EN+ Y V+L+VLH +FS FG V KI
Sbjct: 125 NAVHTGNMSLSGTATASDGGMMPGQSPVLRIIVENLYYPVSLEVLHQIFSKFGTVLKIIT 184
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRD 337
F KN QAL+QY D A AK AL+G IY+ G C L + +S+ T L++K NND+SRD
Sbjct: 185 FTKNNQFQALLQYADPMNAHHAKVALDGQNIYN-GCCTLRVEFSKLTSLNVKYNNDKSRD 243
Query: 338 YTLPSTPMVNSQPSI--LGQQPVPMVGATANQYNGAQ-FAP----PPPEQPMMHQPTAAG 390
+T P + QP++ Q G ++ Y GA FAP P M P A G
Sbjct: 244 FTRLDLPSGDGQPTLDPTMQTAFGAPGIISSPYPGAAGFAPAIGFPQAGLSMQAMPGALG 303
Query: 391 WGAVPPASQSMPM 403
+P ++ + M
Sbjct: 304 PLTIPSSAMTGRM 316
>gi|161079544|ref|NP_001097993.1| hephaestus, isoform M [Drosophila melanogaster]
gi|16589094|gb|AAL27010.1|AF436844_1 hephaestus [Drosophila melanogaster]
gi|158030461|gb|ABW08817.1| hephaestus, isoform M [Drosophila melanogaster]
Length = 568
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 129/269 (47%), Gaps = 72/269 (26%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 33 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCYT 90
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 91 VT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPASGSPLPLSAAANATSN 148
Query: 99 -------------IVNNKTTADVAGN---------VLLVTIEGTDARLVSIDVLHLVFSA 136
I+ N + + GN VL V +E VS+D+LH +F
Sbjct: 149 NANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL-MYPVSLDILHQIFQR 207
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S
Sbjct: 208 YGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSK 260
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
T L+VK+ + +SRD+TNP LP +D
Sbjct: 261 LTALNVKYNNDKSRDFTNPALPPGEPGVD 289
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 184 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 243
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 244 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 282
>gi|195505570|ref|XP_002099562.1| GE23291 [Drosophila yakuba]
gi|194185663|gb|EDW99274.1| GE23291 [Drosophila yakuba]
Length = 802
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 131/272 (48%), Gaps = 75/272 (27%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 268 SKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 324
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 325 -TVNPPQMRGRMVYVQFSNHRELKTDQSHNNSIVPSDYRIQSPAGGSPLPLCAAANASSN 383
Query: 99 --------------IVNNKTTA-DVAGN----------VLLVTIEGTDARLVSIDVLHLV 133
I+ N T+A AGN VL V +E VS+D+LH +
Sbjct: 384 NANSSGDSNSSAVGILQNNTSAVSAAGNNTNSAGGPNTVLRVIVESL-MYPVSLDILHQI 442
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI
Sbjct: 443 FQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRID 495
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
S T L+VK+ + +SRD+TNP LP +D
Sbjct: 496 NSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 527
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
SA+ A+G + G + VL +E++ Y V+LD+LH +F +G V KI F KN
Sbjct: 404 SAVSAAGNNTNSAGG-----PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKN 458
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
QALIQYPD +A AK L+G IY+ G C L I S+ T L++K NND+SRD+T P
Sbjct: 459 NSFQALIQYPDANSAQHAKSLLDGQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNP 517
Query: 342 STP 344
+ P
Sbjct: 518 ALP 520
>gi|397524|emb|CAA52653.1| polypyrimidine tract binding protein [Rattus norvegicus]
Length = 556
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 132/248 (53%), Gaps = 50/248 (20%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T P++V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPTRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADVAGNVL 113
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++A L
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLA---L 163
Query: 114 LVTIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
+ DA + V++DVLH +FS FG V KI TF K FQA
Sbjct: 164 RASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQA 223
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT
Sbjct: 224 LLQYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTR 276
Query: 215 PYLPVAPS 222
P LP S
Sbjct: 277 PDLPSGDS 284
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 94/166 (56%), Gaps = 15/166 (9%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N L + +A+DA G + +S VL +EN+ Y VTLDVLH +FS FG V
Sbjct: 160 NLALRASAAAVDA---------GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVL 210
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F KN QAL+QY D +A AK +L+G IY+ C L I +S+ T L++K NND
Sbjct: 211 KIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNND 269
Query: 334 RSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TANQYNGAQFAP 375
+SRDYT P P +SQPS L Q GA +A+ Y GA F P
Sbjct: 270 KSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSASPYAGAGFPP 314
>gi|194904631|ref|XP_001981034.1| GG11844 [Drosophila erecta]
gi|190655672|gb|EDV52904.1| GG11844 [Drosophila erecta]
Length = 800
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 132/272 (48%), Gaps = 75/272 (27%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V TK V +NQAFIE AD A +++S Y
Sbjct: 262 SKVIHLRNIPNESGEADVIALGIPFGRV--TKVLVLKGKNQAFIEMADEISATSLVSCY- 318
Query: 77 SSSEPAQVRGKTVYLQYSNRQE-------------------------------------- 98
+ P Q+RG+ VY+Q+SN +E
Sbjct: 319 -TVNPPQMRGRMVYVQFSNHRELKTDQSHNNSIVPSDYRIQSPAGGSPLPLCAAANASSN 377
Query: 99 --------------IVNNKTTA-DVAGN----------VLLVTIEGTDARLVSIDVLHLV 133
I+ N T+A AGN VL V +E VS+D+LH +
Sbjct: 378 NANSSGDSNSSAVGILQNNTSAVSAAGNNTNSAGGPNTVLRVIVESL-MYPVSLDILHQI 436
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI
Sbjct: 437 FQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRID 489
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
S T L+VK+ + +SRD+TNP LP +D
Sbjct: 490 NSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 521
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
SA+ A+G + G + VL +E++ Y V+LD+LH +F +G V KI F KN
Sbjct: 398 SAVSAAGNNTNSAGG-----PNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKN 452
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
QALIQYPD +A AK L+G IY+ G C L I S+ T L++K NND+SRD+T P
Sbjct: 453 NSFQALIQYPDANSAQHAKSLLDGQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNP 511
Query: 342 STP 344
+ P
Sbjct: 512 ALP 514
>gi|119581561|gb|EAW61157.1| polypyrimidine tract binding protein 1, isoform CRA_f [Homo
sapiens]
Length = 520
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 22 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 79
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 80 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 137
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 138 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 196
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 197 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 249
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 250 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 309
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 310 AAAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE 364
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 365 --NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 405
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 144 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 203
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 204 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 259
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 260 -DQTMAAAFASPYAGAGFPP 278
>gi|395831594|ref|XP_003788880.1| PREDICTED: polypyrimidine tract-binding protein 1 [Otolemur
garnettii]
Length = 582
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 84 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 141
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 142 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 199
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 200 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 258
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 259 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 311
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 312 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 371
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 372 AAAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE 426
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 427 --NALVQMADANQAQLAMSHLSGHKLHGK---PIRITLSKHQNVQL 467
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 206 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 265
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 266 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 321
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 322 -DQTMAAAFASPYAGAGFPP 340
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 385 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADANQAQLA 441
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L G + +RIT S H ++ + + + T Y
Sbjct: 442 MSHLSGHKLHGK---------PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 492
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +++ + L ++FS+ G V K F +N AL
Sbjct: 493 GSKNF----QNIFPPSATL--HLSNIPPSISEEDLKILFSSNGGVVKGFKFFQNDRKMAL 546
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 547 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 581
>gi|357623431|gb|EHJ74585.1| putative polypyrimidine tract binding protein [Danaus plexippus]
Length = 621
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 133/281 (47%), Gaps = 88/281 (31%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANR-------------------- 55
PS+V+H+RN+P E TE E+I+LG PFG+V N G N+
Sbjct: 72 PSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKGKNQACAGVFCTPVGHVKMPKAGF 131
Query: 56 ------------NQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK 103
QAF+E A+ A+AM++Y+ AQ+RG+ VY+Q+SN +E+ ++
Sbjct: 132 CGGELRAHRIRCTQAFLEMAEEISAVAMVAYFGGCV--AQLRGRAVYVQFSNHKELKTDQ 189
Query: 104 T-------------------------------------------TADVAG---NVLLVTI 117
T D+ G VL V I
Sbjct: 190 THSNASASAQAALQAAQAISNSAGAALVAGAGAALQPANGGTEIQCDLQGGPNTVLRVII 249
Query: 118 EGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP 177
E +V +DVL+ +F +G V KI TF K FQAL+Q+ DT +A AK ALDG++I
Sbjct: 250 EHMLYPIV-LDVLYSIFQRYGKVLKIVTFTKNNSFQALIQYPDTGSAQMAKTALDGQNIY 308
Query: 178 RYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
G CTLRI YS T L+VK+ + +SRDYTNP LP
Sbjct: 309 N-------GCCTLRIDYSKMTCLNVKYNNDKSRDYTNPTLP 342
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 6/139 (4%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL IE+M Y + LDVL+ +F +G V KI F KN QALIQYPD +A +AK A
Sbjct: 242 NTVLRVIIEHMLYPIVLDVLYSIFQRYGKVLKIVTFTKNNSFQALIQYPDTGSAQMAKTA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQP-SILGQQPVPMV 361
L+G IY+ G C L I YS+ T L++K NND+SRDYT P+ P + +L + +P+
Sbjct: 302 LDGQNIYN-GCCTLRIDYSKMTCLNVKYNNDKSRDYTNPTLPSGDGDAHQLLTSELMPLR 360
Query: 362 G----ATANQYNGAQFAPP 376
A++ +G APP
Sbjct: 361 AHLALNLASRMSGGVLAPP 379
>gi|402903490|ref|XP_003914598.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Papio
anubis]
Length = 549
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 279 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 338
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 339 AAAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE 393
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 394 --NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 434
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 288
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 289 -DQTMAAAFASPYAGAGFPP 307
>gi|14165464|ref|NP_114367.1| polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
gi|332850820|ref|XP_003316018.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Pan
troglodytes]
gi|35770|emb|CAA46443.1| polypirimidine tract binding protein [Homo sapiens]
gi|119581556|gb|EAW61152.1| polypyrimidine tract binding protein 1, isoform CRA_a [Homo
sapiens]
gi|410218532|gb|JAA06485.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 550
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 280 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 339
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 340 AAAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE 394
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 395 --NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 435
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 289
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 290 -DQTMAAAFASPYAGAGFPP 308
>gi|402743987|ref|NP_001257986.1| polypyrimidine tract-binding protein 1 isoform a [Rattus
norvegicus]
gi|38197632|gb|AAH61858.1| Ptbp1 protein [Rattus norvegicus]
gi|149034647|gb|EDL89384.1| polypyrimidine tract binding protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 556
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 359 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 415
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 416 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 466
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 467 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 520
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 521 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 555
>gi|149037108|gb|EDL91639.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
gi|149037109|gb|EDL91640.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b
[Rattus norvegicus]
Length = 514
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 177/397 (44%), Gaps = 102/397 (25%)
Query: 1 MASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ 57
MA+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++Q
Sbjct: 1 MANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQ 58
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ MI+YY + +R + VY+QYSN +E+ +
Sbjct: 59 AFLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAV 116
Query: 105 TADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTF 146
+A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 117 SAVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 176
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 177 TKNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNN 229
Query: 207 HRSRDYTNPYLPVA----------PSAIDASGQLS------------------------- 231
+SRD+T LP +A A G +S
Sbjct: 230 DKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSA 289
Query: 232 ------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
+ + G P ++VLL + N + +T L ++F +G V
Sbjct: 290 VPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVH 348
Query: 274 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 349 RVKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLY 383
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 133 EGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 192
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 193 NAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 249
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P +
Sbjct: 250 ------------------------EPPM-----AAAFGA--PGIMSSPYAGAAGFAPAIA 278
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 279 FPQAAGLSVSAVPGALG 295
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D ++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 316 IPGNSVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 371
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 372 IAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 422
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 423 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 476
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 477 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 513
>gi|266862|sp|Q00438.1|PTBP1_RAT RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I; AltName: Full=Pyrimidine-binding protein;
Short=PYBP
Length = 555
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGA 371
GA +A+ Y GA
Sbjct: 291 TMAAAFGAPGIMSASPYAGA 310
>gi|320170468|gb|EFW47367.1| polypyrimidine tract-binding protein PTB-2 [Capsaspora owczarzaki
ATCC 30864]
Length = 546
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
KVLH+RN+P + TE ELI +G +G V NT + N+ Q FIE L+ A +++ AS
Sbjct: 69 KVLHVRNMPLDVTEPELIAIGAKYGPVANTL--LLHNKGQGFIEMEQLDAAKNLLA--AS 124
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNK-------TTADVAGN---------VLLVTIEGTD 121
+ P +RG+ VY Q SN ++ N+ + +GN VL V I
Sbjct: 125 EANPQFIRGRRVYFQPSNHVQLKRNEQHHGGAAASGSHSGNNDSSFEPKPVLRVEIHNV- 183
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+V++DVLH +FS FG V +I TF K FQA +Q++D +A +AK++LDG+SI
Sbjct: 184 LYVVTLDVLHQIFSKFGNVLRIITFNKNNLFQAFIQYADLNSAKNAKSSLDGQSIY---- 239
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
G C LRI YS +L+V+F + + RDYTNP LP
Sbjct: 240 ---TGCCQLRIFYSRLDELNVRFNNDKCRDYTNPNLPTG 275
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
ASG S G + EP+ VL I N+ Y VTLDVLH +FS FG V +I F+KN Q
Sbjct: 158 ASGSHS-GNNDSSFEPKP-VLRVEIHNVLYVVTLDVLHQIFSKFGNVLRIITFNKNNLFQ 215
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345
A IQY D+ +A AK +L+G IY G C+L I YSR +L+++ NND+ RDYT P+ P
Sbjct: 216 AFIQYADLNSAKNAKSSLDGQSIYTGC-CQLRIFYSRLDELNVRFNNDKCRDYTNPNLPT 274
Query: 346 VNSQP 350
++ P
Sbjct: 275 GDNTP 279
>gi|73987397|ref|XP_868637.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 6 [Canis
lupus familiaris]
Length = 550
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 186/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 280 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 339
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 340 AAAGRIAIPGLAGAG----NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE 394
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 395 --NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQNVQL 435
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 289
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 290 -DQTMAAAFASPYAGAGFPP 308
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 353 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 409
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + +RIT S H ++ + + + T Y
Sbjct: 410 MSHLNGHKLHGK---------PVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 460
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L ++FS+ G + K F + AL
Sbjct: 461 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMAL 514
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 515 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 549
>gi|148670262|gb|EDL02209.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Mus
musculus]
Length = 590
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 177/391 (45%), Gaps = 106/391 (27%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 85 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASE 142
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ MI+YY + +R + VY+QYSN +E+ + +A +GN+
Sbjct: 143 EAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNL 200
Query: 113 LLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + L V+++VLH +FS FG V KI TF K FQA
Sbjct: 201 SLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 260
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT- 213
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 261 LLQYADPVNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 313
Query: 214 ---------------------------NPY-------------------LPVAPSAID-- 225
+PY +P P A+
Sbjct: 314 LDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPL 373
Query: 226 ------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MF 278
SG++++ G P ++VLL + N + +T L ++F +G V ++ MF
Sbjct: 374 TLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVKIMF 430
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+K AL+Q D A +A L G +Y
Sbjct: 431 NKKE--NALVQMADASQAQLAMNHLSGQRLY 459
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 197 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 256
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 257 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 315
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 316 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 342
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 343 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 371
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 396 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 451
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 452 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 502
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 503 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 556
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 557 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 589
>gi|66809907|ref|XP_638677.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60467316|gb|EAL65349.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 892
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 16/208 (7%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+ Q PSKV+HLRNLP +CT++E+ + +PFG + N G +NQA ++ +L
Sbjct: 301 SKKQKNLVHTPSKVIHLRNLPSDCTDQEIKSMVEPFGVIENLIIIKG--KNQALVQMVEL 358
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+ A + I YY + +R K +Y Q+SNR+EI K T + +LLVTI +
Sbjct: 359 SSATSFIQYYTTVQ--GSIRSKIIYAQFSNRKEISPAKETPNC---ILLVTISNYFYN-I 412
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+ID L VFS +G + KI F K+ +Q+L++ E A+ AKN LDG +I
Sbjct: 413 TIDELFKVFSHYGTILKILLFTKSGNYQSLIEMKTPEEATKAKNVLDGVNI--------N 464
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYT 213
C+L+I YS+ T L +K+ + +SRD+T
Sbjct: 465 NSCSLKIQYSSLTSLKIKYNNEKSRDFT 492
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
+LL +I N Y +T+D L VFS +G + KI +F K+G Q+LI+ + A AK L+
Sbjct: 400 ILLVTISNYFYNITIDELFKVFSHYGTILKILLFTKSGNYQSLIEMKTPEEATKAKNVLD 459
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
G I + C L I YS T L IK NN++SRD+T+
Sbjct: 460 GVNINNS--CSLKIQYSSLTSLKIKYNNEKSRDFTV 493
>gi|344243367|gb|EGV99470.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 528
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 24 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 81
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 82 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 139
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 140 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 198
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 199 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 251
Query: 217 LPVAPS 222
LP S
Sbjct: 252 LPSGDS 257
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 146 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 205
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 206 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 263
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 264 TMAAAFGAPGIMSASPYAGAGFPP 287
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 331 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 387
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 388 MSHLNGHK---------LHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 438
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 439 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKMAL 492
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 493 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 527
>gi|148670263|gb|EDL02210.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Mus
musculus]
Length = 556
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 44 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 101
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 102 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 159
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 160 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 219
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 220 KNNQFQALLQYADPVNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 272
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 273 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 332
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 333 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 389
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 390 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 425
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 163 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 222
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 223 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 281
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 282 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 308
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 309 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 337
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 362 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 417
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 418 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 468
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 469 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 522
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 523 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 555
>gi|255003709|ref|NP_659153.2| polypyrimidine tract-binding protein 3 isoform 1 [Mus musculus]
Length = 551
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 39 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 96
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 97 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 154
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 155 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 214
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 215 KNNQFQALLQYADPVNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 267
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 268 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 327
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 328 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 384
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 385 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 420
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 112/219 (51%), Gaps = 36/219 (16%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 158 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 217
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 218 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 276
Query: 343 TPMVNSQPSILGQQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWG--A 393
P + QPS+ +P PM G ++ Y GA FA P + P AAG A
Sbjct: 277 LPTGDGQPSL---EP-PMAAAFGAPGIMSSPYAGAAGFA------PAIAFPQAAGLSVPA 326
Query: 394 VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGM 432
VP A + P ++ +M +PG SGM
Sbjct: 327 VPGA------------LGPLTLTSSAVSGRMAIPGASGM 353
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 357 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 412
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 413 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 463
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 464 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 517
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 518 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 550
>gi|148670261|gb|EDL02208.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Mus
musculus]
Length = 528
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 42 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 99
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 100 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 157
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 158 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 217
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 218 KNNQFQALLQYADPVNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 270
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 271 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 330
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 331 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 387
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 388 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 423
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 161 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 220
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 221 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 279
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 280 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 306
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 307 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 335
>gi|13879326|gb|AAH06638.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 520
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 8 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 65
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 66 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 123
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 124 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 183
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 184 KNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 236
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 237 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 296
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 297 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 353
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 354 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 389
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 127 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 186
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 187 QFQALLQYADPVNAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 245
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 246 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 272
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 273 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 301
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 326 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 381
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 382 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 432
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 433 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 486
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 487 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 519
>gi|426229473|ref|XP_004008815.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3 [Ovis
aries]
Length = 550
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 185/406 (45%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 280 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 339
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 340 AAAGRIAIPGLAGAG----NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKVLFNKKE 394
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H + +
Sbjct: 395 --NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQSVQL 435
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 289
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 290 -DQTMAAAFASPYAGAGFPP 308
>gi|354480918|ref|XP_003502650.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
Length = 591
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 132/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 87 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 144
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 145 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 202
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 203 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 261
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 262 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 314
Query: 217 LPVAPS 222
LP S
Sbjct: 315 LPSGDS 320
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 209 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 268
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 269 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 326
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 327 TMAAAFGAPGIMSASPYAGAGFPP 350
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 394 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 450
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 451 MSHLNG---------HKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 501
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 502 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKNLFSSNGGVVKGFKFFQKDRKMAL 555
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 556 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 590
>gi|30039680|ref|NP_835458.1| polypyrimidine tract-binding protein 3 isoform 2 [Mus musculus]
gi|50401558|sp|Q8BHD7.1|PTBP3_MOUSE RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|26329429|dbj|BAC28453.1| unnamed protein product [Mus musculus]
gi|26353590|dbj|BAC40425.1| unnamed protein product [Mus musculus]
gi|34785867|gb|AAH57641.1| ROD1 regulator of differentiation 1 (S. pombe) [Mus musculus]
Length = 523
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 240 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 299
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 300 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 356
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 357 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 392
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 304
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 329 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 384
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 385 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 435
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 436 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 489
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 490 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|149037107|gb|EDL91638.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a
[Rattus norvegicus]
Length = 528
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 176/396 (44%), Gaps = 102/396 (25%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 42 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 99
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 100 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 157
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 158 AVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 217
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 218 KNNQFQALLQYADPVNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 270
Query: 208 RSRDYTNPYLPVA----------PSAIDASGQLS-------------------------- 231
+SRD+T LP +A A G +S
Sbjct: 271 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAV 330
Query: 232 -----------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
+ + G P ++VLL + N + +T L ++F +G V +
Sbjct: 331 PGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHR 389
Query: 275 IA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ MF+K AL+Q D A +A L G +Y
Sbjct: 390 VKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLY 423
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 173 EGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 232
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 233 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 289
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P +
Sbjct: 290 ------------------------EPPM-----AAAFGA--PGIMSSPYAGAAGFAPAIA 318
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 319 FPQAAGLSVSAVPGALG 335
>gi|187608032|ref|NP_001120518.1| polypyrimidine tract binding protein 3 [Xenopus (Silurana)
tropicalis]
gi|170287806|gb|AAI61422.1| LOC100145652 protein [Xenopus (Silurana) tropicalis]
Length = 519
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 184/409 (44%), Gaps = 100/409 (24%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R +P + TE E+I LG PFGKV N G ++QAF+E A A++M++YY
Sbjct: 26 PSRVLHIRKIPNDVTESEIISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVSMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLLVTIEGTDA 122
+ P VR + VY+QYSN +E+ + +G + L ++ G +
Sbjct: 84 --TPVPPHVRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVNTLQSGGLTLTSVPGGEG 141
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
+ V+++VLH +FS FG V KI TF K FQAL+Q++D A
Sbjct: 142 LVLSGQSPVLRIIVENLFYPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYADPMNA 201
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA---- 220
AK ALDG++I CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 202 HHAKVALDGQNIYN-------ACCTLRIEFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQP 254
Query: 221 ------PSAIDASGQLS-----------------------------------------VG 233
+A A G +S +
Sbjct: 255 SLDTTMAAAFGAPGIISSPYAGAAGFAPAIGFPQAGLSVPGVPGLGPLALTTSAITGRMA 314
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPD 292
+ G P +VLL S N A+ L ++F +G VQ++ +F+K AL+Q D
Sbjct: 315 IPGMTAIPGHSVLLVSNLNPD-AILPHGLFILFGVYGDVQRVKILFNKKE--NALVQMTD 371
Query: 293 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR--SRDYT 339
A A L G ++ G ++ +S + L + + D+ ++DYT
Sbjct: 372 ATQAQFAMSHLNGQRLH-GRVLRITLSKHQSVQLPREGHEDQGLTKDYT 419
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 233 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
G +G L +S VL +EN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 138 GGEGLVLSGQSPVLRIIVENLFYPVTLEVLHQIFSKFGTVIKIITFTKNNQFQALLQYAD 197
Query: 293 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 198 PMNAHHAKVALDGQNIYN-ACCTLRIEFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 256
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 105 TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTET 163
TA +VLLV+ DA L L ++F +G V ++ F K ALVQ +D
Sbjct: 319 TAIPGHSVLLVSNLNPDAILP--HGLFILFGVYGDVQRVKILFNKKE--NALVQMTDATQ 374
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA 223
A A + L+G+ + +L RIT S H + + + H + T Y
Sbjct: 375 AQFAMSHLNGQRLHGRVL---------RITLSKHQSVQLPREGHEDQGLTKDYTNSPLHR 425
Query: 224 IDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG 282
G + + + P S L + N+ VT + L +F++ G V+ F K+
Sbjct: 426 FKKPGSKNF----QNIFPPSATL--HLSNIPPLVTDEDLKRLFASTGCSVKGFKFFQKDR 479
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
+ ALIQ V+ A++A L H + G L +S+S+
Sbjct: 480 KM-ALIQLGSVEEAILALIELHNHDL--GENHHLRVSFSK 516
>gi|131529|sp|P17225.2|PTBP1_MOUSE RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|53553|emb|CAA36321.1| 25kDa nuclear protein [Mus musculus]
Length = 527
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 133/259 (51%), Gaps = 46/259 (17%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA-------- 122
M++YY S + P +RG+ +Y+Q+SN +E+ + + V L + +
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAAS 166
Query: 123 -----------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVLH +FS FG V KI TF K FQAL+Q
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQ 226
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P L
Sbjct: 227 YADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDL 279
Query: 218 PVAPS--AIDASGQLSVGL 234
P S ++D + + GL
Sbjct: 280 PSGDSQPSLDQTMAAAFGL 298
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
>gi|351714013|gb|EHB16932.1| Polypyrimidine tract-binding protein 1, partial [Heterocephalus
glaber]
Length = 548
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 132/247 (53%), Gaps = 47/247 (19%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 40 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 97
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI------------------VNNKTTADV---- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 98 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQAVRAHAALQAVNSVQSGNLALAA 155
Query: 109 -----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155
AG VL + +E V++DVLH +FS FG V KI TF K + FQAL
Sbjct: 156 SAAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQAL 214
Query: 156 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 215 LQYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRP 267
Query: 216 YLPVAPS 222
LP S
Sbjct: 268 DLPSGDS 274
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 163 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVS 222
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 223 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 280
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 281 TMAAAFGAPGIISASPYAGAGFPP 304
>gi|313234966|emb|CBY24911.1| unnamed protein product [Oikopleura dioica]
Length = 788
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 204/465 (43%), Gaps = 88/465 (18%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISY 74
S+VLH+R LP + TE E+ +L PF K + N ++NQAF+E ++ A M Y
Sbjct: 147 SRVLHVRGLPDDVTEHEIWKLVLPF-KTLGLMVNFMHLKSKNQAFLEVDNIEMAREMAQY 205
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI------VNNKTTADV---------AGNVLLVTIEG 119
Y + P +R +T++LQ+SN +++ + K D+ + +VL V +E
Sbjct: 206 YLLN--PPCIRQRTIHLQFSNHKQLSPPSSALQEKLLMDLRNFQEAEGGSNHVLRVVVEN 263
Query: 120 TDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG-RSIPR 178
+++VL +FS FG V K+ TF K FQAL+Q A + K +G R +
Sbjct: 264 M-TYPTTLEVLTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAMKTEDEGSRVLHV 322
Query: 179 YLLPENMGPCTL-RITYSAHT-DLSVKFQSHRS--------------RDYTNPYLPVAPS 222
LP+++ + ++ T L V F +S R+ YL P
Sbjct: 323 RGLPDDVTEHEIWKLVLPFKTLGLMVNFMHLKSKNQAFLEVDNIEMAREMAQYYLLNPPC 382
Query: 223 AIDASGQLSVGLDGKKLEPES----------------------NVLLASIENMQYAVTLD 260
+ L + K+L P S +VL +ENM Y TL+
Sbjct: 383 IRQRTIHLQFS-NHKQLSPPSSALQEKLLMDLRKFQEAEGGSNHVLRVVVENMTYPTTLE 441
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320
VL +FS FG V K+ F KN QALIQ A AK +L+G +Y C L I Y
Sbjct: 442 VLTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAAKLSLDGKNVYTNC-CTLRIDY 500
Query: 321 SRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQ 380
S+ L++K NN++SRDYT P P + S +Q++ Q P
Sbjct: 501 SKLQQLNVKFNNEKSRDYTRPELPQCDDYNS--------------HQHHSQQMIQPYQSG 546
Query: 381 PMMHQPTAAGWGAVPPASQS-MPMMGNH----PYM----PPGSMP 416
M P AG +P + S +P + NH PY PP S P
Sbjct: 547 LMGQAPQLAG---IPTSMMSPIPSIQNHNVPSPYQHASAPPSSGP 588
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/384 (27%), Positives = 174/384 (45%), Gaps = 78/384 (20%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISY 74
S+VLH+R LP + TE E+ +L PF K + N ++NQAF+E ++ A M Y
Sbjct: 317 SRVLHVRGLPDDVTEHEIWKLVLPF-KTLGLMVNFMHLKSKNQAFLEVDNIEMAREMAQY 375
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI------VNNKTTADV---------AGNVLLVTIEG 119
Y + P +R +T++LQ+SN +++ + K D+ + +VL V +E
Sbjct: 376 YLLN--PPCIRQRTIHLQFSNHKQLSPPSSALQEKLLMDLRKFQEAEGGSNHVLRVVVEN 433
Query: 120 TDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRY 179
+++VL +FS FG V K+ TF K FQAL+Q A +AK +LDG+++
Sbjct: 434 M-TYPTTLEVLTHLFSQFGNVLKVITFTKNNQFQALIQMDCESNAQAAKLSLDGKNV--- 489
Query: 180 LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP---------------VAPSAI 224
CTLRI YS L+VKF + +SRDYT P LP + P
Sbjct: 490 ----YTNCCTLRIDYSKLQQLNVKFNNEKSRDYTRPELPQCDDYNSHQHHSQQMIQPYQS 545
Query: 225 DASGQL--SVGLDGKKLEP-----ESNV------------------LLASIENMQYAVTL 259
GQ G+ + P NV L+A+++ + +T
Sbjct: 546 GLMGQAPQLAGIPTSMMSPIPSIQNHNVPSPYQHASAPPSSGPTVLLVANLDEQR--ITC 603
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
D+L +F +G V ++ + N AL+Q D A A L ++D + +
Sbjct: 604 DILFTLFGVYGNVLRVKIL-YNKKDNALLQMADNHQATTALTHLNSRVLHDK---PIRVV 659
Query: 320 YSRHTDLSIKVNNDR----SRDYT 339
+S+H + + +N ++D+T
Sbjct: 660 FSKHQQVQLPKDNHEACVLTKDFT 683
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS+ LHL N+P E E+ + EL PFG + N + +R A IE QA+
Sbjct: 698 FQNIHPPSETLHLSNIPPEIEEDRIRELFVPFGNIKNFRF-FHNDRKMALIEMGTEPQAV 756
Query: 70 -AMISYY 75
A+I +
Sbjct: 757 EALIELH 763
>gi|73987389|ref|XP_542215.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Canis
lupus familiaris]
Length = 557
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 360 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 416
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + +RIT S H ++ + + + T Y
Sbjct: 417 MSHLNGHKLHGK---------PVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 467
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L ++FS+ G + K F + AL
Sbjct: 468 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKILFSSNGGIVKGFKFFQKDRKMAL 521
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 522 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 556
>gi|402903486|ref|XP_003914596.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Papio
anubis]
gi|380814964|gb|AFE79356.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
gi|384948416|gb|AFI37813.1| polypyrimidine tract-binding protein 1 isoform a [Macaca mulatta]
Length = 556
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIISASPYAGAGFPP 314
>gi|119581557|gb|EAW61153.1| polypyrimidine tract binding protein 1, isoform CRA_b [Homo
sapiens]
Length = 527
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 22 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 79
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 80 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 137
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 138 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 196
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 197 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 249
Query: 217 LPVAPS 222
LP S
Sbjct: 250 LPSGDS 255
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 144 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 203
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 204 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 261
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 262 TMAAAFGAPGIISASPYAGAGFPP 285
>gi|4506243|ref|NP_002810.1| polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
gi|332850812|ref|XP_001172084.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Pan
troglodytes]
gi|32354|emb|CAA47386.1| nuclear ribonucleoprotein [Homo sapiens]
gi|35772|emb|CAA46444.1| polypirimidine tract binding protein [Homo sapiens]
gi|12803183|gb|AAH02397.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|15489171|gb|AAH13694.1| Polypyrimidine tract binding protein 1 [Homo sapiens]
gi|30582477|gb|AAP35465.1| polypyrimidine tract binding protein 1 [Homo sapiens]
gi|61359435|gb|AAX41718.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|61359442|gb|AAX41719.1| polypyrimidine tract binding protein 1 [synthetic construct]
gi|119581558|gb|EAW61154.1| polypyrimidine tract binding protein 1, isoform CRA_c [Homo
sapiens]
gi|410218528|gb|JAA06483.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
gi|410301208|gb|JAA29204.1| polypyrimidine tract binding protein 1 [Pan troglodytes]
Length = 557
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIISASPYAGAGFPP 315
>gi|426229469|ref|XP_004008813.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Ovis
aries]
Length = 557
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|30583817|gb|AAP36157.1| Homo sapiens polypyrimidine tract binding protein 1 [synthetic
construct]
gi|61369451|gb|AAX43339.1| polypyrimidine tract binding protein 1 [synthetic construct]
Length = 558
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIISASPYAGAGFPP 315
>gi|426386368|ref|XP_004059657.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 533
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 164/338 (48%), Gaps = 78/338 (23%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGG 283
L S N + VT L ++F +G VQ++ +F + GG
Sbjct: 340 LVSNLNPER-VTPQSLFILFGVYGDVQRVKILFSRGGG 376
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
>gi|301776290|ref|XP_002923578.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|440893263|gb|ELR46101.1| Polypyrimidine tract-binding protein 1, partial [Bos grunniens
mutus]
Length = 548
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 43 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 100
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 101 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 158
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 159 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 217
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 218 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 270
Query: 217 LPVAPS 222
LP S
Sbjct: 271 LPSGDS 276
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 165 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 224
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 225 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 282
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 283 TMAAAFGAPGIMSASPYAGAGFPP 306
>gi|426386366|ref|XP_004059656.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 559
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIISASPYAGAGFPP 315
>gi|158454983|gb|AAI03384.1| PTBP1 protein [Bos taurus]
Length = 446
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVTP--VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|355714176|gb|AES04919.1| polypyrimidine tract binding protein 1 [Mustela putorius furo]
Length = 353
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVTP--VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|13786186|ref|NP_112636.1| polypyrimidine tract-binding protein 3 [Rattus norvegicus]
gi|50401225|sp|Q9Z118.1|PTBP3_RAT RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|4514552|dbj|BAA75465.1| Rod1 [Rattus norvegicus]
Length = 523
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 176/396 (44%), Gaps = 102/396 (25%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYTNPYLPVA----------PSAIDASGQLS-------------------------- 231
+SRD+T LP +A A G +S
Sbjct: 240 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAV 299
Query: 232 -----------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
+ + G P ++VLL + N + +T L ++F +G V +
Sbjct: 300 PGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHR 358
Query: 275 IA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ MF+K AL+Q D A +A L G +Y
Sbjct: 359 VKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLY 392
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 142 EGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 201
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 202 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 258
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P +
Sbjct: 259 ------------------------EPPM-----AAAFGA--PGIMSSPYAGAAGFAPAIA 287
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 288 FPQAAGLSVSAVPGALG 304
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D ++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 325 IPGNSVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 380
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 381 IAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 431
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 432 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 485
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 486 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|348510807|ref|XP_003442936.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 575
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 122/241 (50%), Gaps = 45/241 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A M+SYY
Sbjct: 70 PSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKG--KNQAFLELNSEECAQTMVSYY 127
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA------------- 122
SS P +R +Y+QYS +E+ + + V L +
Sbjct: 128 -SSVTPV-IRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGSVAISADAG 185
Query: 123 -------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
R+ V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 186 SMAGAAAAQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADA 245
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
TA AK +LDG++I CTLRI++S T L+VK+ + +SRDYT P LP A
Sbjct: 246 MTAQHAKMSLDGQNIYN-------ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTAD 298
Query: 222 S 222
S
Sbjct: 299 S 299
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QALIQY D TA AK
Sbjct: 194 QSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADAMTAQHAKM 253
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L IS+S+ T L++K NND+SRDYT P P +SQPSI Q
Sbjct: 254 SLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSIDHQAMAAAF 312
Query: 362 GA----TANQYNGAQFAPP 376
A +A+ Y GA PP
Sbjct: 313 AAPGIISASPYGGAHAFPP 331
>gi|426386370|ref|XP_004059658.1| PREDICTED: polypyrimidine tract-binding protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 552
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 289
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 290 -DQTMAAAFASPYAGAGFPP 308
>gi|410949959|ref|XP_003981684.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Felis catus]
Length = 508
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|327263703|ref|XP_003216657.1| PREDICTED: regulator of differentiation 1-like [Anolis
carolinensis]
Length = 558
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 188/414 (45%), Gaps = 108/414 (26%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P + TE E+I LG PFG+V N G ++QAF+E A A+ M++YY
Sbjct: 63 PSRVLHLRKIPNDVTEAEVISLGLPFGRVTNLLMLKG--KSQAFLEMASEEAAVTMVNYY 120
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLLVTIEGTDA 122
+ +R + VY+QYSN +E+ + +A +G + L T+
Sbjct: 121 TPIT--PHLRSQPVYIQYSNHRELKTDNLPNQARTQAALQAVSAVQSGGLALTGAPATEG 178
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
L V+++VL+ +FS FG V KI TF K FQAL+Q++D A
Sbjct: 179 GLPPGQSSVLRIIVENLFYPVTLEVLYQIFSKFGTVLKIITFTKNNQFQALLQYADPLNA 238
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP------ 218
A+ ALDG++I CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 239 HYARMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQP 291
Query: 219 ----------------------------------------------VAPSAIDAS---GQ 229
+ P AI S G+
Sbjct: 292 SLEPTMAAAFGTPGIISSPYAGAAGFAPAIGFPQAAGLSVQGVPSALGPLAITTSTMTGR 351
Query: 230 LSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQAL 287
+++ G+ G P ++VLL S N A+T D L ++F +G V ++ MF+K AL
Sbjct: 352 MAIPGVHGM---PGNSVLLVSNLNPD-AITPDGLFILFGVYGDVHRVKIMFNKKE--NAL 405
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR--SRDYT 339
+Q D A +A L G +Y G ++ +S + L + D+ ++DY+
Sbjct: 406 VQMADATQAQLAMNHLNGQKLY-GKMLRVTLSKHQTVQLPREGQEDQGLTKDYS 458
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 7/164 (4%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG---LDGKKLEPESNVLLA 248
I YS H +L +++R T L A SA+ + G G +G +S+VL
Sbjct: 134 IQYSNHRELKTDNLPNQAR--TQAALQ-AVSAVQSGGLALTGAPATEGGLPPGQSSVLRI 190
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
+EN+ Y VTL+VL+ +FS FG V KI F KN QAL+QY D A A+ AL+G I
Sbjct: 191 IVENLFYPVTLEVLYQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYARMALDGQNI 250
Query: 309 YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
Y+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 251 YN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQPSL 293
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLV+ DA ++ D L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 364 SVLLVSNLNPDA--ITPDGLFILFGVYGDVHRVKIMFNKKE--NALVQMADATQAQLAMN 419
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L+G+ + +L R+T S H + + + + T Y G
Sbjct: 420 HLNGQKLYGKML---------RVTLSKHQTVQLPREGQEDQGLTKDYSNSPLHRFKKPGS 470
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G + K F ALIQ
Sbjct: 471 KNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFADTGCIVKAFKFFPKDRKMALIQ 524
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 525 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|20809354|gb|AAH28848.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLLILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 554
>gi|281341342|gb|EFB16926.1| hypothetical protein PANDA_012716 [Ailuropoda melanoleuca]
Length = 540
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 40 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 97
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 98 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 155
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 156 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 214
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 215 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 267
Query: 217 LPVAPS 222
LP S
Sbjct: 268 LPSGDS 273
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 162 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 221
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 222 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 279
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 280 TMAAAFGAPGIMSASPYAGAGFPP 303
>gi|47523538|ref|NP_999396.1| polypyrimidine tract-binding protein 1 [Sus scrofa]
gi|2500586|sp|Q29099.1|PTBP1_PIG RecName: Full=Polypyrimidine tract-binding protein 1; Short=PTB;
AltName: Full=Heterogeneous nuclear ribonucleoprotein I;
Short=hnRNP I
gi|1122433|emb|CAA63597.1| polypyrimidine tract-binding protein [Sus scrofa]
Length = 557
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 130/242 (53%), Gaps = 46/242 (19%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LP 218
LP
Sbjct: 280 LP 281
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
>gi|28849152|dbj|BAC65159.1| polypirimidine tract binding protein [Mus musculus]
Length = 554
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 91/217 (41%), Gaps = 22/217 (10%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVAKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H D G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNH---DLGEHHLRVSFSKST 553
>gi|116517301|ref|NP_001070831.1| polypyrimidine tract-binding protein 1 isoform 1 [Mus musculus]
gi|13938631|gb|AAH07472.1| Polypyrimidine tract binding protein 1 [Mus musculus]
gi|26328983|dbj|BAC28230.1| unnamed protein product [Mus musculus]
gi|26334239|dbj|BAC30837.1| unnamed protein product [Mus musculus]
gi|26335929|dbj|BAC31665.1| unnamed protein product [Mus musculus]
gi|26341260|dbj|BAC34292.1| unnamed protein product [Mus musculus]
gi|26353506|dbj|BAC40383.1| unnamed protein product [Mus musculus]
gi|74191391|dbj|BAE30277.1| unnamed protein product [Mus musculus]
gi|148699699|gb|EDL31646.1| mCG13402, isoform CRA_c [Mus musculus]
Length = 555
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 554
>gi|42490826|gb|AAH66210.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
>gi|148699701|gb|EDL31648.1| mCG13402, isoform CRA_e [Mus musculus]
Length = 454
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/401 (31%), Positives = 184/401 (45%), Gaps = 101/401 (25%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 67 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 124
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 125 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 182
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 183 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 241
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 242 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 294
Query: 217 LPVAPS--AIDASGQLSVG---LDGKKLEPES-NVLLASIENMQY--------------- 255
LP S ++D + + L+G KL +S + L+ +++Q
Sbjct: 295 LPSGDSQPSLDQTMAAAFAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYG 354
Query: 256 --------------------------------AVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
+V+ D L +FS+ G V K F +
Sbjct: 355 SSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDR 414
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ AV A L H + G L +S+S+ T
Sbjct: 415 KMALIQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 453
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 189 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 248
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 249 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 304
>gi|55824722|gb|AAH86489.1| Polypyrimidine tract binding protein 1 [Mus musculus]
Length = 555
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIGFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIGFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 554
>gi|355702910|gb|EHH29401.1| hypothetical protein EGK_09820, partial [Macaca mulatta]
Length = 555
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 188/413 (45%), Gaps = 117/413 (28%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 50 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 107
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN + + VN+ + ++
Sbjct: 108 MVNYYTSVT-PV-LRGQPIYIQFSNHKGLKTDSSPNQARAQAALQAVNSVQSGNLALAAS 165
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 166 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 224
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 225 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 277
Query: 217 LPV----------------APSAIDAS--------------------------------- 227
LP AP I AS
Sbjct: 278 LPSGDSQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGIQIPNIHGALVPLAI 337
Query: 228 ----------GQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
G++++ GL G ++VLL S N + VT L ++F +G VQ++
Sbjct: 338 PSAAAAAAAAGRIAIPGLAGAG----NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVK 392
Query: 277 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
+F+K AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 393 ILFNKKE--NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 440
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 172 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 231
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 232 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 289
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 290 TMAAAFGAPGIISASPYAGAGFPP 313
>gi|395750059|ref|XP_003779055.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Pongo abelii]
Length = 782
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 46/237 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 282 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 339
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV---------- 108
S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 340 TSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVD 397
Query: 109 -----AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 398 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 456
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 457 VSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 506
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 399 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 458
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P QP++
Sbjct: 459 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPS-GRQPALAWD 516
Query: 356 Q---PVPMVGA-TANQYNGAQFAP 375
Q P P +A+ Y GA F P
Sbjct: 517 QNHGPRPXXXXISASPYAGAGFPP 540
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 585 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 641
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 642 MSHLNGHKL--HGKP-------IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 692
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ + L ++FS+ G V K F + AL
Sbjct: 693 GSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 746
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 747 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 781
>gi|74194434|dbj|BAE37269.1| unnamed protein product [Mus musculus]
Length = 520
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
>gi|417411514|gb|JAA52191.1| Putative polypyrimidine tract-binding protein, partial [Desmodus
rotundus]
Length = 541
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 136/253 (53%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPPS---KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PPS +VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 29 ANGNDNKKFKGDRPPSSPSRVLHLRKIPSDATEAEVISLGLPFGKVTNLLMLKG--KSQA 86
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A AI M++YY + +R + +++QYSN +E+ + +
Sbjct: 87 FLEMASEEAAITMVNYYTPVT--PHLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVS 144
Query: 106 ADVAGNVLL---VTIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L +T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 145 AVQSGNLALPGALTNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 204
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 205 KNNQFQALLQYADPLNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 257
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 258 KSRDFTRLDLPTG 270
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 160 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 219
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + PS+
Sbjct: 220 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGHPSL-- 276
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 277 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 305
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 306 FPQATGLSVPAVPGALG 322
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 343 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 398
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 399 LAMNHLSGQRLYGKVL---------RATLSKHQTVQLPREGQEDQGLTKDFSNSPLHRFK 449
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 450 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCTVKAFKFFQKDRKM 503
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 504 ALIQLESVEEAIQALIELHNHDL--GENHHLRVSFSKST 540
>gi|148699703|gb|EDL31650.1| mCG13402, isoform CRA_g [Mus musculus]
Length = 366
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 130/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVAP--VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
>gi|417402720|gb|JAA48196.1| Putative polypyrimidine tract-binding protein [Desmodus rotundus]
Length = 557
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 129/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVN----NKTTADVA---------GN------ 111
M++YY S + P +RG+ +Y+Q+SN +E+ N+ A A GN
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALHAVNSVQSGNLALAAS 167
Query: 112 ---------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q+++ +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYAEPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY + +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 360 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 416
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 417 MSHLNGHKL--HGKP-------VRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 467
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L ++FS+ G V K F + AL
Sbjct: 468 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKILFSSNGGVVKGFKFFQKDRKMAL 521
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 522 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 556
>gi|198434992|ref|XP_002131695.1| PREDICTED: similar to polypyrimidine tract binding protein-like
isoform 1 [Ciona intestinalis]
Length = 528
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 25/222 (11%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+R+LP + +E+E+I+LG FGKV N G +NQAF+E + A M++ A
Sbjct: 43 SKVIHIRSLPSDVSEQEVIQLGLSFGKVTNLLMLKG--KNQAFLEMENSEVAREMVNECA 100
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA------RLV----- 125
S P +R + +Y+QYSN +E+ + + V +L ++ T+ R+V
Sbjct: 101 IS--PPTIRQRVLYVQYSNHKELKTDSSPNQVKAQAVLQAMQQTEGGPNHVLRVVVENML 158
Query: 126 ---SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++DVLH +F+ FG V K TF K FQAL+Q D + +AK +LDG++I
Sbjct: 159 YPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLSLDGQNIYN---- 214
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 224
G CTLRI YS L+VK+ + +SRDYT LP S+I
Sbjct: 215 ---GCCTLRIEYSKLPALNVKYNNDKSRDYTRNDLPSGESSI 253
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +ENM Y +TLDVLH +F+ FG V K F KN QAL+Q D + AK +L+
Sbjct: 149 VLRVVVENMLYPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLSLD 208
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 357
G IY+G C L I YS+ L++K NND+SRDYT P + + SIL P
Sbjct: 209 GQNIYNGC-CTLRIEYSKLPALNVKYNNDKSRDYTRNDLP--SGESSILNNPP 258
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS+VLHL N+P + TEE L + FGKV K +R A I+ + + +A+
Sbjct: 444 FQNIYPPSEVLHLSNIPNDVTEEFLKDSFAAFGKVHGFKF-FAKDRKMALIQMSTVEEAV 502
>gi|348556107|ref|XP_003463864.1| PREDICTED: regulator of differentiation 1-like [Cavia porcellus]
Length = 688
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 177/389 (45%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 183 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASE 240
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +GN+
Sbjct: 241 EAAVTMVNYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAIQSGNL 298
Query: 113 LL-------VTI---EGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L VTI + R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 299 TLHGAPSNEVTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 358
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT- 213
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 359 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 411
Query: 214 ---------------------------NPY-------------------LPVAPSAIDAS 227
+PY +P P A+
Sbjct: 412 LDLPSGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 471
Query: 228 GQLSVGLDGKKLEPES------NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
S + G+ P + +VLL + N +T L ++F +G V ++ MF+K
Sbjct: 472 ALTSSAITGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 530
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 531 KE--NALVQMADANQAQLAMNHLSGQRLY 557
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 314 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 373
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 374 ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQPSL 423
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 490 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 545
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 546 LAMNHLSGQRLYGKVL---------RATLSKHQTVQLPREGQEDQGLTKDFSNSPLHRFK 596
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 597 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 650
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 651 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 687
>gi|198434994|ref|XP_002131704.1| PREDICTED: similar to polypyrimidine tract binding protein-like
isoform 2 [Ciona intestinalis]
Length = 495
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 25/222 (11%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+R+LP + +E+E+I+LG FGKV N G +NQAF+E + A M++ A
Sbjct: 43 SKVIHIRSLPSDVSEQEVIQLGLSFGKVTNLLMLKG--KNQAFLEMENSEVAREMVNECA 100
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA------RLV----- 125
S P +R + +Y+QYSN +E+ + + V +L ++ T+ R+V
Sbjct: 101 IS--PPTIRQRVLYVQYSNHKELKTDSSPNQVKAQAVLQAMQQTEGGPNHVLRVVVENML 158
Query: 126 ---SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++DVLH +F+ FG V K TF K FQAL+Q D + +AK +LDG++I
Sbjct: 159 YPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLSLDGQNIYN---- 214
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 224
G CTLRI YS L+VK+ + +SRDYT LP S+I
Sbjct: 215 ---GCCTLRIEYSKLPALNVKYNNDKSRDYTRNDLPSGESSI 253
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VL +ENM Y +TLDVLH +F+ FG V K F KN QAL+Q D + AK +
Sbjct: 147 NHVLRVVVENMLYPITLDVLHTIFTKFGVVLKTITFTKNNQFQALLQMGDAIQSQTAKLS 206
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 357
L+G IY+G C L I YS+ L++K NND+SRDYT P + + SIL P
Sbjct: 207 LDGQNIYNGC-CTLRIEYSKLPALNVKYNNDKSRDYTRNDLP--SGESSILNNPP 258
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS+VLHL N+P + TEE L + FGKV K +R A I+ + + +A+
Sbjct: 411 FQNIYPPSEVLHLSNIPNDVTEEFLKDSFAAFGKVHGFKF-FAKDRKMALIQMSTVEEAV 469
>gi|62087400|dbj|BAD92147.1| polypyrimidine tract-binding protein 1 isoform c variant [Homo
sapiens]
Length = 329
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 46/241 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 74 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 131
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV---------- 108
S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 132 TSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVD 189
Query: 109 -----AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 190 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 248
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 249 VSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 301
Query: 222 S 222
S
Sbjct: 302 S 302
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 191 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 250
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 251 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 306
>gi|74152131|dbj|BAE32096.1| unnamed protein product [Mus musculus]
Length = 555
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++Y+ S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYFTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIMSASPYAGAGFPP 314
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 554
>gi|26353062|dbj|BAC40161.1| unnamed protein product [Mus musculus]
Length = 299
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 46/241 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 113
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV---------- 108
S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 114 TSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVD 171
Query: 109 -----AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 172 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 230
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 231 VSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 283
Query: 222 S 222
S
Sbjct: 284 S 284
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
>gi|403308155|ref|XP_003944537.1| PREDICTED: uncharacterized protein LOC101029560 [Saimiri
boliviensis boliviensis]
Length = 1167
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 128/237 (54%), Gaps = 46/237 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 292 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 349
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV---------- 108
S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 350 TSVTP--VLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVD 407
Query: 109 -----AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 408 AGMVMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 466
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 467 VSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 516
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 415 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 474
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 475 SLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAF 532
Query: 362 GA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 533 GAPGIISASPYAGAGFPP 550
>gi|354486792|ref|XP_003505562.1| PREDICTED: regulator of differentiation 1-like [Cricetulus griseus]
Length = 643
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 174/390 (44%), Gaps = 104/390 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 138 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASE 195
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGN- 111
A+ M++YY + +R + VY+QYSN +E+ + +A +GN
Sbjct: 196 EAAVTMVNYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGNL 253
Query: 112 ------------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQ 153
VL + IE V+++VLH +FS FG V KI TF K FQ
Sbjct: 254 SLPGAPSNEGAVLPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQ 312
Query: 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
AL+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 313 ALLQYADPLNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFT 365
Query: 214 NPYLPVA--------------------------------------------PSAIDASGQ 229
LP P+ A G
Sbjct: 366 RLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGP 425
Query: 230 LSV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD 279
L++ + G P ++VLL + N + +T L ++F +G V ++ MF+
Sbjct: 426 LTLTSSAVTGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVKIMFN 484
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
K AL+Q D A +A L G +Y
Sbjct: 485 KKE--NALVQMADASQAQLAMNHLSGQRLY 512
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 262 EGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 321
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 322 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 378
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D ++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 445 IPGNSVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 500
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 501 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 551
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 552 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 605
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 606 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 642
>gi|395513379|ref|XP_003760903.1| PREDICTED: polypyrimidine tract-binding protein 1 [Sarcophilus
harrisii]
Length = 557
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAF+E +
Sbjct: 52 RSTGVPSRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFLEMNTEEASNT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN------ 111
M+SYY + + P +R + +Y+Q+SN +E+ + + + +GN
Sbjct: 110 MVSYYTTVT-PV-LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSAS 167
Query: 112 ---------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAADAGMAVAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q+SD +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYSDPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS 222
LP S
Sbjct: 280 LPSGDS 285
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDPVSAQHAKL 239
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 240 SLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAF 297
Query: 362 GA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 298 GAPGIISASPYAGAGFPP 315
Score = 38.1 bits (87), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 360 AGNSVLL-VSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 416
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + +RIT S H + + + + T Y
Sbjct: 417 MSHLNG---------QKLHGKPIRITLSKHQTVQLPREGQEDQGLTKDYGNSPLHRFKKP 467
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +++ D L M+FS+ G + K F + AL
Sbjct: 468 GSKNF----QNIFPPSATL--HLSNIPPSISEDDLKMLFSSNGGMVKGFKFFQKDRKMAL 521
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ + L H + G L +S+S+ T
Sbjct: 522 IQMGSVEEAIQSLIDLHNHDL--GENHHLRVSFSKST 556
>gi|390466248|ref|XP_003733548.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 2 [Callithrix jacchus]
Length = 499
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 122/235 (51%), Gaps = 44/235 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 65 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 122
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 123 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 180
Query: 123 ---------RLVSIDVLH----------LVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
R++ ID ++ +FS FG V KI TF K FQAL+Q+ D
Sbjct: 181 VTPAQSPVLRII-IDNMYYPVTXXXXTKXIFSKFGAVLKIITFTKNNQFQALLQYGDPVN 239
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
A AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 240 AQQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 287
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 242 ESNVLLASIENMQYAVTLDVL-HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+S VL I+NM Y VT +FS FG V KI F KN QAL+QY D A AK
Sbjct: 185 QSPVLRIIIDNMYYPVTXXXXTKXIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAK 244
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 245 LALDGQNIYNA-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 295
>gi|351710810|gb|EHB13729.1| Regulator of differentiation 1, partial [Heterocephalus glaber]
Length = 539
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 132/251 (52%), Gaps = 45/251 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 27 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 84
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + VY+QYSN +E+ + +
Sbjct: 85 FLEMASEEAAVTMVNYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 142
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L +A + V+++VLH +FS FG V KI TF
Sbjct: 143 AVQSGNLALHGAPSNEATVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 202
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 203 KNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 255
Query: 208 RSRDYTNPYLP 218
+SRD+T LP
Sbjct: 256 KSRDFTRLDLP 266
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 91/190 (47%), Gaps = 34/190 (17%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 165 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 224
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 225 ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQPSL--------- 274
Query: 362 GATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGM 421
E PM AA +GA P S P G + P P G+
Sbjct: 275 -----------------EPPM-----AAAFGA--PGIISSPYTGAAGFAPAIGFPQATGL 310
Query: 422 MQMHMPGQSG 431
+PG G
Sbjct: 311 SVPAVPGALG 320
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
V GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 341 VPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADAHQAQ 396
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 397 LAMNHLSGQRLYGKVL---------RATLSKHQTVQLPREGQEDQGLTKDFSNSPLHRFK 447
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 448 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNIFTEAGCSVKAFKFFQKDRKM 501
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 502 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 538
>gi|168017642|ref|XP_001761356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687362|gb|EDQ73745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 441
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 175/353 (49%), Gaps = 65/353 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH+RN+ E E +L++L + FG V K + +NQA ++ D+ AI ++ YY
Sbjct: 4 PSKVLHIRNVGPEVAESDLLQLAQSFGVV--QKVVMLRAKNQALLQMQDVPSAINVMQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--------------NVLLVTIEGTD 121
++ +P+ VRG+ VY+Q+S+ +E+ TT D G +LL+TI
Sbjct: 62 -TTVQPS-VRGRNVYMQFSSHKEL----TTPDQNGQTRRLPAEQELLPNRILLITIHNP- 114
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+++DVLH VFS GFV KI TF K+AG QAL+Q++ +A A+ L GR+I
Sbjct: 115 LYPITVDVLHQVFSPHGFVEKIVTFTKSAGLQALLQYASQPSAVQARTTLQGRNIYD--- 171
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ------------ 229
G CTL I YS +L V + + R+RD+TN LP S SG
Sbjct: 172 ----GCCTLDIQYSNLQELQVNYNNERTRDFTNAALPSEQSRPGNSGNNIMVLLGCLYLV 227
Query: 230 ---------------LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
L G+ G S +L++++ + + D L +FS +G + +
Sbjct: 228 AMGGASAAAAAFGGVLPPGITGTN--DRSTLLVSNL--VPEKIDADRLFNLFSNYGNIVR 283
Query: 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
I + N ALIQ D A +A L+G ++ ++ +++S+H ++
Sbjct: 284 IKIL-HNKPDHALIQMGDGFQAELAFNYLKGVTLFGK---RMDVNFSKHAQIN 332
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 120/243 (49%), Gaps = 47/243 (19%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA-------SSAKNALDGRSIPRYL 180
D+L L +FG V K+ A QAL+Q D +A ++ + ++ GR++
Sbjct: 21 DLLQLA-QSFGVVQKVVMLR--AKNQALLQMQDVPSAINVMQYYTTVQPSVRGRNV---- 73
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+ +S+H +L+ Q+ ++R LP ++L
Sbjct: 74 ----------YMQFSSHKELTTPDQNGQTRR-----LPAE----------------QELL 102
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +LL +I N Y +T+DVLH VFS G V+KI F K+ GLQAL+QY +AV A+
Sbjct: 103 P-NRILLITIHNPLYPITVDVLHQVFSPHGFVEKIVTFTKSAGLQALLQYASQPSAVQAR 161
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
L+G IYDG C L I YS +L + NN+R+RD+T + P S+P G + +
Sbjct: 162 TTLQGRNIYDGC-CTLDIQYSNLQELQVNYNNERTRDFTNAALPSEQSRPGNSGNNIMVL 220
Query: 361 VGA 363
+G
Sbjct: 221 LGC 223
>gi|387017724|gb|AFJ50980.1| Polypyrimidine tract-binding protein 1-like [Crotalus adamanteus]
Length = 556
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 129/242 (53%), Gaps = 46/242 (19%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTAD------ 107
M+SYY + + P +R + +Y+Q+SN +E+ VN+ + +
Sbjct: 110 MVSYYTTIA-PV-LRSQQIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSAS 167
Query: 108 ---------VAGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
+AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LP 218
LP
Sbjct: 280 LP 281
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIISASPYAGAGFPP 315
>gi|449273011|gb|EMC82640.1| Polypyrimidine tract-binding protein 1, partial [Columba livia]
Length = 525
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 51/248 (20%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE +
Sbjct: 14 RSAGVPSRVIHIRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEASNT 71
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----VNNKTTADV---------------AG 110
M++YY + + P +R + +Y+Q+SN +E+ N T V +G
Sbjct: 72 MVNYYTTVT-PV-LRSQPIYIQFSNHKELKTDSSANQAVTCLVLQRAQAALQAVNSVQSG 129
Query: 111 NV-LLVTIEGTDARL-------------------VSIDVLHLVFSAFGFVHKITTFEKTA 150
N+ LL + DA + V++DVLH +FS FG V KI TF K
Sbjct: 130 NLALLASPAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN 189
Query: 151 GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSR 210
FQAL+Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SR
Sbjct: 190 QFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLRIEFSKLTSLNVKYNNDKSR 242
Query: 211 DYTNPYLP 218
DYT P LP
Sbjct: 243 DYTRPDLP 250
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 87/149 (58%), Gaps = 10/149 (6%)
Query: 204 FQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263
Q+ S N L +P+A+DA G + +S VL +EN+ Y VTLDVLH
Sbjct: 120 LQAVNSVQSGNLALLASPAAVDA---------GMAMAGQSPVLRIIVENLFYPVTLDVLH 170
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+FS FG V KI F KN QAL+QY D +A AK +L+G IY+ C L I +S+
Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIEFSKL 229
Query: 324 TDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
T L++K NND+SRDYT P P ++QP++
Sbjct: 230 TSLNVKYNNDKSRDYTRPDLPSGDNQPAL 258
>gi|348505292|ref|XP_003440195.1| PREDICTED: regulator of differentiation 1 [Oreochromis niloticus]
Length = 514
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 175/373 (46%), Gaps = 85/373 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR LP + +E+E++ L PFG+V +K +NQAF+E A A+ M++YY
Sbjct: 40 PSRVLHLRQLPPDVSEQEVLSLALPFGRV--SKLITLKTKNQAFLEMASEEAAVTMVNYY 97
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--------------GN---------- 111
S++ +R + VY+QYS +E+ + T+ A GN
Sbjct: 98 TSAT--PSIRSQPVYIQYSTHRELKTDNMTSQRAQAALQAINAGAVHSGNMTSGGEGRGI 155
Query: 112 ------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
VL + +E V+++VL +FS FG V KI TF + FQAL+QFSDT A
Sbjct: 156 APGQSPVLRIIVENL-FYPVTLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDTVHAQ 214
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
AK LDG++I G CTLRI +S + L+VK+ + +SRD+T LP ++
Sbjct: 215 HAKATLDGQNIYN-------GCCTLRIDFSKLSALNVKYNNDKSRDFTRADLP--SGELE 265
Query: 226 ASGQLSVGLD--GKKLEPES--------------------------------NVLLASIE 251
+ V L G P + +VLL S
Sbjct: 266 PTAAFGVALPPYGAAAFPPTFHQHTGLSMAAVPGSLVSHPRVSLQMAPPVVHSVLLVSNL 325
Query: 252 NMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
N + +VT L ++F +G VQ++ +F+K AL+Q D A +A L G ++
Sbjct: 326 NPE-SVTPHCLFILFGVYGDVQRVKILFNKKEN--ALVQMSDATQAQLAMSHLNGQRLHG 382
Query: 311 GGFCKLHISYSRH 323
+ ++ S+H
Sbjct: 383 N---VIRVTLSKH 392
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 106/323 (32%), Positives = 146/323 (45%), Gaps = 72/323 (22%)
Query: 114 LVTIEGTD-------ARLVSIDVLHL-----------VFSA---FGFVHKITTFEKTAGF 152
L T++GTD A+ + VLHL V S FG V K+ T KT
Sbjct: 21 LSTVDGTDRLCVSERAQCIPSRVLHLRQLPPDVSEQEVLSLALPFGRVSKLITL-KTKN- 78
Query: 153 QALVQFSDTETASSAKNALDG-----RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
QA ++ + E A + N RS P Y I YS H +L
Sbjct: 79 QAFLEMASEEAAVTMVNYYTSATPSIRSQPVY------------IQYSTHREL------- 119
Query: 208 RSRDYTNPYLPVAPSAIDA----SGQLSVGLDGKKLEP-ESNVLLASIENMQYAVTLDVL 262
++ + T+ A AI+A SG ++ G +G+ + P +S VL +EN+ Y VTL+VL
Sbjct: 120 KTDNMTSQRAQAALQAINAGAVHSGNMTSGGEGRGIAPGQSPVLRIIVENLFYPVTLEVL 179
Query: 263 HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
+FS FG V KI F +N QAL+Q+ D A AK L+G IY+G C L I +S+
Sbjct: 180 QQIFSKFGSVLKIITFTRNNQFQALLQFSDTVHAQHAKATLDGQNIYNGC-CTLRIDFSK 238
Query: 323 HTDLSIKVNNDRSRDYT---LPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPE 379
+ L++K NND+SRD+T LPS + +P G Y A F
Sbjct: 239 LSALNVKYNNDKSRDFTRADLPSGEL----------EPTAAFGVALPPYGAAAFP----- 283
Query: 380 QPMMHQPTAAGWGAVPPASQSMP 402
P HQ T AVP + S P
Sbjct: 284 -PTFHQHTGLSMAAVPGSLVSHP 305
>gi|344244560|gb|EGW00664.1| Regulator of differentiation 1 [Cricetulus griseus]
Length = 523
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 177/397 (44%), Gaps = 104/397 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + VY+QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMVNYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGN-------------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF 146
A +GN VL + IE V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGNLSLPGAPSNEGAVLPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITF 185
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 186 TKNNQFQALLQYADPLNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNN 238
Query: 207 HRSRDYTNPYLPVA----------PSAIDASGQLS------------------------- 231
+SRD+T LP +A A G +S
Sbjct: 239 DKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPA 298
Query: 232 ------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
+ + G P ++VLL + N + +T L ++F +G V
Sbjct: 299 VPGALGPLTLTSSAVTGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVH 357
Query: 274 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 358 RVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 392
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 142 EGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 201
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 202 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 258
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 259 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 287
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 288 FPQATGLSVPAVPGALG 304
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D ++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 325 IPGNSVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 380
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 381 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 431
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 432 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 485
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 486 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|291382801|ref|XP_002708166.1| PREDICTED: ROD1 regulator of differentiation 1-like [Oryctolagus
cuniculus]
Length = 1000
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 172/389 (44%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 495 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASE 552
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 553 EAAVTMVNYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 610
Query: 113 LLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + + V+++VLH +FS FG V KI TF K FQA
Sbjct: 611 ALPGAPSNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 670
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 671 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 723
Query: 215 PYLPVA--------------------------------------------PSAIDASGQL 230
LP P+ A G L
Sbjct: 724 LDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 783
Query: 231 SV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
++ + G P ++VLL + N +T L ++F +G V ++ MF+K
Sbjct: 784 AITSSAVTGRMAIPGGSGVPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 842
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 843 K--ENALVQMADANQAQLAMNHLSGQRLY 869
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 619 EGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 678
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 679 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 735
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
V GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 802 VPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 857
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 858 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 908
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 909 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 962
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 963 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 999
>gi|444730196|gb|ELW70586.1| Regulator of differentiation 1 [Tupaia chinensis]
Length = 386
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 177/385 (45%), Gaps = 83/385 (21%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 15 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASE 72
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGN- 111
A+ M++YY + +R + VY+QYSN +E+ + +A +G+
Sbjct: 73 EAAVTMVNYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 130
Query: 112 ------------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQ 153
VL + IE V+++VLH +FS FG V KI TF K FQ
Sbjct: 131 ALPGAPSSEGPVLPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQ 189
Query: 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
AL+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 190 ALLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFT 242
Query: 214 NPYLPVA------------------PSAIDASGQLSV---------GLDGKKLEPESNVL 246
LP P+ A G L++ + G P ++VL
Sbjct: 243 RLDLPTGDGQPSLESPMAAAFGLSVPTVPGALGPLAITSSAVTGRMAIPGASGIPGNSVL 302
Query: 247 LASIENMQ-------YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
L + N + + +D L +F G K F + ALIQ V+ A+ A
Sbjct: 303 LVTNLNPDLITPHGLFILFVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQA 362
Query: 300 KEALEGHCIYDGGFCKLHISYSRHT 324
L H + G L +S+S+ T
Sbjct: 363 LIELHNHDL--GENHHLRVSFSKST 385
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 217 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
LP APS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI
Sbjct: 132 LPGAPSS-----------EGPVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKII 180
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 336
F KN QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SR
Sbjct: 181 TFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSR 239
Query: 337 DYTLPSTPMVNSQPSI 352
D+T P + QPS+
Sbjct: 240 DFTRLDLPTGDGQPSL 255
>gi|194212378|ref|XP_001915461.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1 [Equus caballus]
Length = 596
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 183/405 (45%), Gaps = 109/405 (26%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 99 RSAGVPSRVIHIRKLPNDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 156
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 157 MVNYYTSVT--PVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 214
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 215 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 273
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q+++ +A AK LD ++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 274 QYAEPVSAQHAKLLLDAQNIYN-------ARCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 326
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 327 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 386
Query: 233 --------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGG 283
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 387 AAGRIALPGLAGAG----NSVLLVSNLNPER-VTPQSLFILFGVYGDVQRVKILFNKKE- 440
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 441 -NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQNVQL 481
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY + +
Sbjct: 221 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVS 280
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK L+ IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 281 AQHAKLLLDAQNIYNAR-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL--- 336
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 337 -DQTMAAAFASPYAGAGFPP 355
>gi|297270365|ref|XP_001099980.2| PREDICTED: regulator of differentiation 1-like [Macaca mulatta]
Length = 860
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 193/433 (44%), Gaps = 103/433 (23%)
Query: 1 MASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ 57
+A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++Q
Sbjct: 347 LANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQ 404
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ M++YY + +R + VY+QYSN +E+ +
Sbjct: 405 AFLEMASEEAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAV 462
Query: 105 TADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+A +G++ L + EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 463 SAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 522
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 523 TKNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNN 575
Query: 207 HRSRDYTNPYLPVA--------------------------------------------PS 222
+SRD+T LP P+
Sbjct: 576 DKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPA 635
Query: 223 AIDASGQLSV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
A G L++ + G P ++VLL + N +T L ++F +G V
Sbjct: 636 VPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVH 694
Query: 274 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 332
++ MF+K AL+Q D A +A L G +Y G + +S + L +
Sbjct: 695 RVKIMFNKKE--NALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQE 751
Query: 333 DRSRDYTLPSTPM 345
D+ ++P+
Sbjct: 752 DQGLTKDFSNSPL 764
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 479 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 538
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 539 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 595
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 662 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 717
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 718 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 768
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 769 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 822
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 823 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 859
>gi|410897873|ref|XP_003962423.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2
[Takifugu rubripes]
Length = 577
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 44/245 (17%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R + PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A
Sbjct: 67 RSSGVPSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKG--KNQAFLELNSEECAQT 124
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL---------------- 114
M++YY SS +R +Y+QYS +E+ + + V L
Sbjct: 125 MVNYY--SSVTPYIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGGMAI 182
Query: 115 ----VTIEGTDARL-------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+I G A+ V+++VLH +FS FG V KI TF K FQAL+Q
Sbjct: 183 PTDPASIAGAAAQSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQ 242
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
D+ TA AK +LDG++I CTLRI++S T L+VK+ + +SRDYT P L
Sbjct: 243 HVDSMTAQHAKLSLDGQNIYN-------ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDL 295
Query: 218 PVAPS 222
P A S
Sbjct: 296 PTADS 300
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTL+VLH +FS FG V KI F KN QALIQ+ D TA AK
Sbjct: 195 QSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQHVDSMTAQHAKL 254
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L IS+S+ T L++K NND+SRDYT P P +SQPS+ Q
Sbjct: 255 SLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSLDPQTMAAAF 313
Query: 362 GA----TANQYNGAQFAPP 376
A +A+ Y GA PP
Sbjct: 314 AAPGIISASPYGGAHAFPP 332
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
NVLLV+ + + V+ L ++F +G V ++ F K ALVQ SD A A +
Sbjct: 383 NVLLVS--NLNPQSVTPHCLFILFGVYGDVMRVKILFNKKE--NALVQMSDGTQAQLAMS 438
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSAID 225
L+G + + +R+T+S HT + + + H ++DY+N P+
Sbjct: 439 HLNG---------QRLHGREMRVTFSKHTTVQLPREGHEDQGLTKDYSNS--PLHRFKKP 487
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
S S + P S L + N+ AV D L +F++ G K F +
Sbjct: 488 GSKNYS------NIFPPSATL--HLSNIPPAVVEDDLKRLFASSGATVKAFKFFQKDHKM 539
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ H + G L +S+S+ T
Sbjct: 540 ALIQMGSVEEAIDCLIKFHNHDL--GENHHLRVSFSKST 576
>gi|410897871|ref|XP_003962422.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1
[Takifugu rubripes]
Length = 575
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 44/245 (17%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R + PS+V+H+R LP + E E+I LG PFGKV N G +NQAF+E A
Sbjct: 65 RSSGVPSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKG--KNQAFLELNSEECAQT 122
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLL---------------- 114
M++YY SS +R +Y+QYS +E+ + + V L
Sbjct: 123 MVNYY--SSVTPYIRNHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGGMAI 180
Query: 115 ----VTIEGTDARL-------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+I G A+ V+++VLH +FS FG V KI TF K FQAL+Q
Sbjct: 181 PTDPASIAGAAAQSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQ 240
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
D+ TA AK +LDG++I CTLRI++S T L+VK+ + +SRDYT P L
Sbjct: 241 HVDSMTAQHAKLSLDGQNIYN-------ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDL 293
Query: 218 PVAPS 222
P A S
Sbjct: 294 PTADS 298
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 84/139 (60%), Gaps = 5/139 (3%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTL+VLH +FS FG V KI F KN QALIQ+ D TA AK
Sbjct: 193 QSPVLRVIVENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALIQHVDSMTAQHAKL 252
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L IS+S+ T L++K NND+SRDYT P P +SQPS+ Q
Sbjct: 253 SLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSQPSLDPQTMAAAF 311
Query: 362 GA----TANQYNGAQFAPP 376
A +A+ Y GA PP
Sbjct: 312 AAPGIISASPYGGAHAFPP 330
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
NVLLV+ + + V+ L ++F +G V ++ F K ALVQ SD A A +
Sbjct: 381 NVLLVS--NLNPQSVTPHCLFILFGVYGDVMRVKILFNKKE--NALVQMSDGTQAQLAMS 436
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSAID 225
L+G + + +R+T+S HT + + + H ++DY+N P+
Sbjct: 437 HLNG---------QRLHGREMRVTFSKHTTVQLPREGHEDQGLTKDYSNS--PLHRFKKP 485
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
S S + P S L + N+ AV D L +F++ G K F +
Sbjct: 486 GSKNYS------NIFPPSATL--HLSNIPPAVVEDDLKRLFASSGATVKAFKFFQKDHKM 537
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ H + G L +S+S+ T
Sbjct: 538 ALIQMGSVEEAIDCLIKFHNHDL--GENHHLRVSFSKST 574
>gi|441622594|ref|XP_003264050.2| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 3 isoform 1 [Nomascus leucogenys]
Length = 555
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 131/254 (51%), Gaps = 47/254 (18%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 43 ANGNDSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQA 100
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI------------------- 99
F+E A A+ M++YY + +R + VY+QYSN +E+
Sbjct: 101 FLEMASEEAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQDALQAVS 158
Query: 100 -VNNKTTADVAGN------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF 146
V + + A G VL + IE R +++VLH +FS FG V KI TF
Sbjct: 159 AVQSGSLALSGGRSNEGTVLPGQSPVLXIIIENLFYR-GTLEVLHQIFSKFGTVLKIITF 217
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 218 TKNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNN 270
Query: 207 HRSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 271 DKSRDFTRLDLPTG 284
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 109/242 (45%), Gaps = 38/242 (15%)
Query: 192 ITYSAHTDLSVKF--QSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249
I YS H +L R++D V ++ SG S +G L +S VL
Sbjct: 131 IQYSNHRELKTDNLPNQARAQDALQAVSAVQSGSLALSGGRSN--EGTVLPGQSPVLXII 188
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
IEN+ Y TL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G IY
Sbjct: 189 IENLFYRGTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIY 248
Query: 310 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 369
+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 249 N-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL----------------- 290
Query: 370 GAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQ 429
E PM AA +GA P S P G + P P G+ +PG
Sbjct: 291 ---------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGA 334
Query: 430 SG 431
G
Sbjct: 335 LG 336
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 357 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 412
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 413 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 463
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 464 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 517
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 518 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 554
>gi|281345981|gb|EFB21565.1| hypothetical protein PANDA_015565 [Ailuropoda melanoleuca]
Length = 444
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 132/253 (52%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 1 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 58
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + V++QYSN +E+ + +
Sbjct: 59 FLEMASEEAAVTMVNYYTPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVS 116
Query: 106 ADVAGNVLL--------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + G L V+++VLH +FS FG V KI TF
Sbjct: 117 AVQSGNLALPGAPPNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFT 176
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 177 KNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 229
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 230 KSRDFTRLDLPTG 242
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 132 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFTKNNQFQALLQYADPV 191
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 192 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 248
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWGAVPPA 397
+P PM G ++ Y GA FAP HQ T AVP A
Sbjct: 249 -EP-PMAAAFGAPGIISSPYAGAAGFAP----AIGFHQATGLSVPAVPGA 292
>gi|349732192|ref|NP_001231827.1| polypyrimidine tract-binding protein 3 isoform 6 [Homo sapiens]
gi|114626184|ref|XP_001149612.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 5 [Pan
troglodytes]
gi|397479183|ref|XP_003810907.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pan
paniscus]
gi|27882560|gb|AAH44585.1| ROD1 protein [Homo sapiens]
gi|119579503|gb|EAW59099.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_a [Homo
sapiens]
Length = 558
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 293
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 294 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 322
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 323 FPQATGLSVPAVPGALG 339
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 416 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|426362704|ref|XP_004048495.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 591
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 176/389 (45%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 56 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 113
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 114 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 171
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 172 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 231
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 232 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 284
Query: 215 PYLPVA--------------------------------------------PSAIDASGQL 230
LP P+ A G L
Sbjct: 285 LDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 344
Query: 231 SV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
++ + G P ++VLL + N +T L ++F +G V ++ MF+K
Sbjct: 345 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 403
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 404 KE--NALVQMADANQAQLAMNHLSGQRLY 430
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 180 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 239
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 240 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 296
>gi|402896661|ref|XP_003911409.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Papio
anubis]
Length = 524
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA 220
LP
Sbjct: 248 LDLPTG 253
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 259
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 260 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 288
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 289 FPQATGLSVPAVPGALG 305
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 382 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|71896363|ref|NP_001026106.1| polypyrimidine tract-binding protein 1 [Gallus gallus]
gi|60098495|emb|CAH65078.1| hypothetical protein RCJMB04_3b17 [Gallus gallus]
Length = 526
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 46/237 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 84
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTAD----------- 107
+ + P +R + +Y+Q+SN +E+ VN+ + +
Sbjct: 85 TTVT-PV-LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALPAPAAAVD 142
Query: 108 ----VAGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
+AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 143 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 201
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 202 MSAQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 251
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 144 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMS 203
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QP L Q
Sbjct: 204 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPP-LDQ 261
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA A+ Y GA F P
Sbjct: 262 TMAAAFGAPGIIPASPYAGAGFPP 285
>gi|402896665|ref|XP_003911411.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Papio
anubis]
Length = 521
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 16 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 73
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 74 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 131
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 132 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 191
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 192 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 244
Query: 215 PYLPVA 220
LP
Sbjct: 245 LDLPTG 250
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 140 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 199
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 200 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 256
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 257 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 285
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 286 FPQATGLSVPAVPGALG 302
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 323 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 378
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 379 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 429
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 430 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 483
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 484 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 520
>gi|355567525|gb|EHH23866.1| hypothetical protein EGK_07422, partial [Macaca mulatta]
Length = 558
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 293
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 294 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 322
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 323 FPQATGLSVPAVPGALG 339
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 416 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|326934420|ref|XP_003213288.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Meleagris
gallopavo]
Length = 526
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 128/237 (54%), Gaps = 46/237 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 84
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTAD----------- 107
+ + P +R + +Y+Q+SN +E+ VN+ + +
Sbjct: 85 TTVT-PV-LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALPAPAAAVD 142
Query: 108 ----VAGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
+AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 143 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 201
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 202 MSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 251
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 144 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMS 203
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QP L Q
Sbjct: 204 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPP-LDQ 261
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA A+ Y GA F P
Sbjct: 262 TMAAAFGAPGIIPASPYAGAGFPP 285
>gi|349732190|ref|NP_001231826.1| polypyrimidine tract-binding protein 3 isoform 5 [Homo sapiens]
Length = 547
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 176/389 (45%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA--------------------------------------------PSAIDASGQL 230
LP P+ A G L
Sbjct: 248 LDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 307
Query: 231 SV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
++ + G P ++VLL + N +T L ++F +G V ++ MF+K
Sbjct: 308 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 366
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 367 KE--NALVQMADANQAQLAMNHLSGQRLY 393
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 259
>gi|355753108|gb|EHH57154.1| hypothetical protein EGM_06734, partial [Macaca fascicularis]
Length = 539
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 34 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 91
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 92 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 149
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 150 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 209
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 210 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 262
Query: 215 PYLPVA 220
LP
Sbjct: 263 LDLPTG 268
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 158 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 217
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 218 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 274
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 275 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 303
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 304 FPQATGLSVPAVPGALG 320
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 341 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 396
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 397 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 447
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 448 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 501
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 502 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 538
>gi|25058871|gb|AAH39896.1| Similar to ROD1 regulator of differentiation 1 (S. pombe), partial
[Homo sapiens]
Length = 618
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 176/389 (45%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 90 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 147
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 148 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 205
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 206 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 265
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 266 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 318
Query: 215 PYLPVA--------------------------------------------PSAIDASGQL 230
LP P+ A G L
Sbjct: 319 LDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 378
Query: 231 SV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
++ + G P ++VLL + N +T L ++F +G V ++ MF+K
Sbjct: 379 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 437
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 438 KE--NALVQMADANQAQLAMNHLSGQRLY 464
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 214 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 273
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 274 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 330
>gi|410043020|ref|XP_003951546.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 558
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 293
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 294 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 322
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 323 FPQATGLSVPAVPGALG 339
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 416 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|334326796|ref|XP_001375584.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Monodelphis
domestica]
Length = 557
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 127/241 (52%), Gaps = 46/241 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAF+E + M+SYY
Sbjct: 57 PSRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFLEMNTEEASNTMVSYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN----------- 111
+ + P +R + +Y+Q+SN +E+ + + + +GN
Sbjct: 115 TTVT-PV-LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAAD 172
Query: 112 ----------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
VL + +E V++DVLH +FS FG V KI TF K FQAL+Q+SD
Sbjct: 173 AGMAVAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDP 231
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 232 VSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 284
Query: 222 S 222
S
Sbjct: 285 S 285
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 180 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYSDPVSAQHAKL 239
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 240 SLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAF 297
Query: 362 GA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 298 GAPGIISASPYAGAGFPP 315
>gi|426362706|ref|XP_004048496.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Gorilla gorilla gorilla]
gi|4514554|dbj|BAA75466.1| Rod1 [Homo sapiens]
Length = 521
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 16 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 73
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 74 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 131
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 132 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 191
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 192 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 244
Query: 215 PYLPVA 220
LP
Sbjct: 245 LDLPTG 250
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 140 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 199
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 200 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 256
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 257 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 285
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 286 FPQATGLSVPAVPGALG 302
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 323 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 378
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 379 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 429
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 430 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 483
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 484 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 520
>gi|255003738|ref|NP_001157260.1| polypyrimidine tract-binding protein 3 isoform 2 [Homo sapiens]
gi|397479181|ref|XP_003810906.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
paniscus]
gi|410043017|ref|XP_003951545.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
gi|194380114|dbj|BAG63824.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA 220
LP
Sbjct: 248 LDLPTG 253
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 259
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 260 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 288
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 289 FPQATGLSVPAVPGALG 305
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 382 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|297685129|ref|XP_002820148.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pongo
abelii]
Length = 558
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LL--------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + G L V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 293
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 294 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 322
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 323 FPQATGLSVPAVPGALG 339
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 416 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|343959136|dbj|BAK63423.1| regulator of differentiation 1 [Pan troglodytes]
Length = 524
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA 220
LP
Sbjct: 248 LDLPTG 253
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 259
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 382 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|410043023|ref|XP_003951547.1| PREDICTED: polypyrimidine tract-binding protein 3 [Pan troglodytes]
Length = 554
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 176/389 (45%), Gaps = 102/389 (26%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA--------------------------------------------PSAIDASGQL 230
LP P+ A G L
Sbjct: 248 LDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPL 307
Query: 231 SV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 280
++ + G P ++VLL + N +T L ++F +G V ++ MF+K
Sbjct: 308 TITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVKIMFNK 366
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIY 309
AL+Q D A +A L G +Y
Sbjct: 367 KE--NALVQMADANQAQLAMNHLSGQRLY 393
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 259
>gi|402896663|ref|XP_003911410.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Papio
anubis]
Length = 555
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 50 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 107
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 108 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 165
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 166 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 225
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 226 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 278
Query: 215 PYLPVA 220
LP
Sbjct: 279 LDLPTG 284
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 174 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 233
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 234 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 290
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 291 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 319
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 320 FPQATGLSVPAVPGALG 336
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 357 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 412
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 413 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 463
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 464 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 517
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 518 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 554
>gi|38569466|ref|NP_005147.3| polypyrimidine tract-binding protein 3 isoform 1 [Homo sapiens]
gi|218511814|sp|O95758.2|PTBP3_HUMAN RecName: Full=Polypyrimidine tract-binding protein 3; AltName:
Full=Regulator of differentiation 1; Short=Rod1
gi|119579504|gb|EAW59100.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
gi|119579505|gb|EAW59101.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_b [Homo
sapiens]
Length = 552
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 47 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 104
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 105 EAAVTMVNYYTPIT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 162
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 163 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 222
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 223 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 275
Query: 215 PYLPVA 220
LP
Sbjct: 276 LDLPTG 281
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 171 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 230
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 231 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 287
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 288 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 316
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 317 FPQATGLSVPAVPGALG 333
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 354 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 409
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 410 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 460
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 461 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 514
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 515 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 551
>gi|255003744|ref|NP_001157262.1| polypyrimidine tract-binding protein 3 isoform 3 [Homo sapiens]
gi|114626182|ref|XP_528390.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 6 [Pan
troglodytes]
gi|397479185|ref|XP_003810908.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pan
paniscus]
gi|51476645|emb|CAH18301.1| hypothetical protein [Homo sapiens]
Length = 555
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 50 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 107
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 108 EAAVTMVNYYTPIT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 165
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 166 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 225
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 226 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 278
Query: 215 PYLPVA 220
LP
Sbjct: 279 LDLPTG 284
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 174 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 233
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 234 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 290
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 291 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 319
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 320 FPQATGLSVPAVPGALG 336
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 357 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 412
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 413 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 463
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 464 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 517
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 518 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 554
>gi|395740821|ref|XP_002820150.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 3 [Pongo
abelii]
Length = 524
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LL--------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + G L V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA 220
LP
Sbjct: 248 LDLPTG 253
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 259
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 260 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 288
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 289 FPQATGLSVPAVPGALG 305
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 382 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|395740824|ref|XP_002820149.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2 [Pongo
abelii]
Length = 555
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 50 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 107
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 108 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 165
Query: 113 LL--------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + G L V+++VLH +FS FG V KI TF K FQA
Sbjct: 166 ALSGGPSNEGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 225
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 226 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 278
Query: 215 PYLPVA 220
LP
Sbjct: 279 LDLPTG 284
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 174 EGAVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 233
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 234 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 290
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 291 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 319
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 320 FPQATGLSVPAVPGALG 336
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 357 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 412
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 413 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 463
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 464 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 517
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 518 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 554
>gi|301781136|ref|XP_002925987.1| PREDICTED: regulator of differentiation 1-like [Ailuropoda
melanoleuca]
Length = 567
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 132/253 (52%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 55 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 112
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + V++QYSN +E+ + +
Sbjct: 113 FLEMASEEAAVTMVNYYTPVT--PHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVS 170
Query: 106 ADVAGNVLL--------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + G L V+++VLH +FS FG V KI TF
Sbjct: 171 AVQSGNLALPGAPPNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFT 230
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 231 KNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 283
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 284 KSRDFTRLDLPTG 296
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 186 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGAVLKIITFTKNNQFQALLQYADPV 245
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 246 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 302
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWGAVPPA 397
+P PM G ++ Y GA FAP HQ T AVP A
Sbjct: 303 -EP-PMAAAFGAPGIISSPYAGAAGFAP----AIGFHQATGLSVPAVPGA 346
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 22/214 (10%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNA 170
VLLVT D L++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 374 VLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMNH 429
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQL 230
L G+ + +L R T S H + + + + T + G
Sbjct: 430 LSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSK 480
Query: 231 SVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 481 NF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQL 534
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 535 GSVEEAIQALIELHNHDL--GENHHLRVSFSKST 566
>gi|223647470|gb|ACN10493.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
Length = 574
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 57/255 (22%)
Query: 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA 68
+ R PS+V+HLR LP + + E+I +G PFGKV N G +NQAF+E ++QA
Sbjct: 54 EMRSPSAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKG--KNQAFLEMNTVDQA 111
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL---- 124
M++YYA+ + +R + V++QYSN +E+ + + V L +
Sbjct: 112 QTMVNYYATVT--PLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGS 169
Query: 125 ------------------------------------------VSIDVLHLVFSAFGFVHK 142
V+++VLH +FS +G V K
Sbjct: 170 TMSGMGGGMGASMSVGGGEMGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLK 229
Query: 143 ITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV 202
I TF K FQALVQ++D TA K +LDG++I G CTLR+++S T L+V
Sbjct: 230 IITFTKNNQFQALVQYADPMTAQHTKMSLDGQNIYN-------GCCTLRVSFSKLTSLNV 282
Query: 203 KFQSHRSRDYTNPYL 217
KF + +SRDYT P L
Sbjct: 283 KFNNDKSRDYTRPDL 297
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ + + +S VL +EN+ Y VTL+VLH +FS +G V KI F KN QAL+QY D
Sbjct: 189 MGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNNQFQALVQYADP 248
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL 353
TA K +L+G IY+ G C L +S+S+ T L++K NND+SRDYT P
Sbjct: 249 MTAQHTKMSLDGQNIYN-GCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDLST-------- 299
Query: 354 GQQPVPMVGATANQYNGAQFAPP 376
G+Q P G + A F P
Sbjct: 300 GEQHNPQPGMDQHAMAAAAFGSP 322
>gi|213513392|ref|NP_001133760.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
gi|209155238|gb|ACI33851.1| Polypyrimidine tract-binding protein 1 [Salmo salar]
Length = 574
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 129/256 (50%), Gaps = 59/256 (23%)
Query: 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA 68
+ R PS+V+HLR LP + + E+I +G PFGKV N G +NQAF+E ++QA
Sbjct: 54 EMRSPSAPSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKG--KNQAFLEMNTVDQA 111
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT------------------------ 104
M++YYA+ + +R + V++QYSN +E+ + +
Sbjct: 112 QTMVNYYATVT--PLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGS 169
Query: 105 -----------TADVAGN------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVH 141
T V G VL V +E V+++VLH +FS +G V
Sbjct: 170 TMSGMGGGMGATMSVGGGEMGARGMATQSPVLRVIVENL-FYPVTLEVLHQIFSKYGSVL 228
Query: 142 KITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 201
KI TF K FQALVQ++D TA K +LDG++I G CTLR+++S T L+
Sbjct: 229 KIITFTKNNQFQALVQYADPMTAQHTKMSLDGQNIYN-------GCCTLRVSFSKLTSLN 281
Query: 202 VKFQSHRSRDYTNPYL 217
VKF + +SRDYT P L
Sbjct: 282 VKFNNDKSRDYTRPDL 297
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ + + +S VL +EN+ Y VTL+VLH +FS +G V KI F KN QAL+QY D
Sbjct: 189 MGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNNQFQALVQYADP 248
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL 353
TA K +L+G IY+ G C L +S+S+ T L++K NND+SRDYT P
Sbjct: 249 MTAQHTKMSLDGQNIYN-GCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDLST-------- 299
Query: 354 GQQPVPMVGATANQYNGAQFAPP 376
G+Q P G + A F P
Sbjct: 300 GEQHNPQPGMDQHAMAAAAFGSP 322
>gi|224087659|ref|XP_002196400.1| PREDICTED: polypyrimidine tract-binding protein 1 [Taeniopygia
guttata]
Length = 525
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 126/241 (52%), Gaps = 46/241 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEETANTMVNYY 84
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT------------------------------- 104
+ + P +R + +Y+Q+SN +E+ + +
Sbjct: 85 TTVT-PV-LRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVTQVQAGAVALAATAAAVD 142
Query: 105 -TADVAGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
+AG VL + +E V++DVLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 143 AGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNHQFQALLQYADP 201
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 202 MSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 254
Query: 222 S 222
S
Sbjct: 255 S 255
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 82/137 (59%), Gaps = 5/137 (3%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 150 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNHQFQALLQYADPMSAQHAKL 209
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQP+ L Q
Sbjct: 210 SLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPT-LDQTMAAAF 267
Query: 362 GA---TANQYNGAQFAP 375
GA + Y GA F P
Sbjct: 268 GAPGIISPPYAGAGFPP 284
>gi|432091564|gb|ELK24589.1| Regulator of differentiation 1 [Myotis davidii]
Length = 524
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 135/253 (53%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 12 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 69
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A AI M++YY + +R + +++QYSN +E+ + +
Sbjct: 70 FLEMASEEAAITMVNYYTPVTP--HLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVS 127
Query: 106 ADVAGNVLL---VTIEGT-------DARL--------VSIDVLHLVFSAFGFVHKITTFE 147
A +G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 128 AVQSGSLALPGAPTNEGTMLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 187
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 188 KNNQFQALLQYADPLNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 240
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 241 KSRDFTRLDLPTG 253
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTMLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + PS+
Sbjct: 203 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGHPSL-- 259
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 260 ------------------------ESPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 288
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 289 FPQATGLSVPGVPGALG 305
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L+G+ + +L R T S H + + + + T +
Sbjct: 382 LAMNHLNGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|431922192|gb|ELK19283.1| Polypyrimidine tract-binding protein 1 [Pteropus alecto]
Length = 566
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 48/260 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G ++QAFIE A
Sbjct: 58 RSAGVPSRVIHIRKLPSDITEGEVISLGLPFGKVTNLLMLKG--KSQAFIEMNTEEAANT 115
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 116 MVNYYTSVT-PV-LRGQPIYVQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 173
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 174 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 232
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q+++ +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 233 QYAEPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 285
Query: 217 LPVAPS--AIDASGQLSVGL 234
LP S ++D + + GL
Sbjct: 286 LPSGDSQPSLDQTMAAAFGL 305
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY + +
Sbjct: 180 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVS 239
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 240 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 295
>gi|334332915|ref|XP_001376108.2| PREDICTED: regulator of differentiation 1 [Monodelphis domestica]
Length = 582
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 175/382 (45%), Gaps = 105/382 (27%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A A+ M++YY
Sbjct: 87 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMVNYY 144
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLLVTIEGTDA 122
+ +R + V++QYSN +E+ + A +G++ L G++
Sbjct: 145 TPVT--PHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLALTAAPGSEG 202
Query: 123 RL------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
+ V+++VL+ +FS FG V +I TF K FQAL+Q++D A
Sbjct: 203 GVLPGQSPVLRIIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNNQFQALLQYADPLNA 262
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT----------- 213
AK LDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 263 HYAKMTLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQP 315
Query: 214 -----------------NPY-------------------LPVAPSAID--------ASGQ 229
+PY +P P A+ +G+
Sbjct: 316 SLDPTMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITTSAVTGR 375
Query: 230 LSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQAL 287
+++ G+ G P ++VLL S N A+T L ++F +G VQ++ MF+K AL
Sbjct: 376 MAIPGVPGV---PGNSVLLVSNLNPD-AITPHGLFILFGVYGDVQRVKIMFNKKE--NAL 429
Query: 288 IQYPDVQTAVVAKEALEGHCIY 309
+Q D A +A L G +Y
Sbjct: 430 VQMADANQAQLAMNHLSGQRLY 451
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG L++ G +G L +S VL +EN+ Y VTL+VL+ +FS FG V +I F KN
Sbjct: 189 SGSLALTAAPGSEGGVLPGQSPVLRIIVENLFYPVTLEVLYQIFSKFGTVLRIITFTKNN 248
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK L+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 249 QFQALLQYADPLNAHYAKMTLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 307
Query: 343 TPMVNSQPSI 352
P + QPS+
Sbjct: 308 LPSGDGQPSL 317
>gi|294461205|gb|ADE76165.1| unknown [Picea sitchensis]
Length = 461
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 178/361 (49%), Gaps = 74/361 (20%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKVLH+RN+ E +E +L++L + FG V TK + +NQA ++ D+ AI ++ +Y
Sbjct: 5 SKVLHIRNVGAEISENDLLQLVQRFGTV--TKLVMLRAKNQALMQMNDIPSAITVLDHY- 61
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN---------VLLVTIEGTDARLVSI 127
S+ +P+ +RG+ VY+Q+S+ QE+ + + N +LLVTI +++
Sbjct: 62 STVQPS-IRGRNVYIQFSSHQELTTTEQSGQARRNGDQDSQPNRILLVTIHHL-LYPITV 119
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
+VLH VFS GFV KI F+K+ G QA VQ+S + A A N L GR+I G
Sbjct: 120 EVLHQVFSPHGFVEKIVIFQKS-GLQAFVQYSSRQNAIQASNTLQGRNIYD-------GC 171
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV-------APSAIDASGQLSV-------- 232
C L I +S +L V + + R+RD+TNP LP A S +A G +
Sbjct: 172 CQLDIQFSNLPELQVNYNNERTRDFTNPSLPSEQKHRLPAQSFGEAGGMYGIQPVSLHHM 231
Query: 233 ------GLDGKKLEPESN------------------------VLLASIENMQYAVTLDVL 262
GL+ ++ P SN VL+A++ + + D L
Sbjct: 232 VSAQAMGLNSLQM-PVSNASAIMEAFGGVLPRGVMGNNDRCTVLVANLNPEK--IDEDKL 288
Query: 263 HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
+FS +G + +I + +N ALIQ D A +A L+G ++ +L +++S+
Sbjct: 289 FNLFSIYGNILRIKLL-RNKPDHALIQMADGLQAELAVNFLKGALLFGK---RLEVNFSK 344
Query: 323 H 323
H
Sbjct: 345 H 345
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 49/235 (20%)
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA-------SSAKN 169
I A + D+L LV FG V K+ A QAL+Q +D +A S+ +
Sbjct: 10 IRNVGAEISENDLLQLV-QRFGTVTKLVMLR--AKNQALMQMNDIPSAITVLDHYSTVQP 66
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
++ GR++ I +S+H +L+ QS ++R
Sbjct: 67 SIRGRNV--------------YIQFSSHQELTTTEQSGQARR------------------ 94
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+G + + +LL +I ++ Y +T++VLH VFS G V+KI +F K+ GLQA +Q
Sbjct: 95 -----NGDQDSQPNRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVIFQKS-GLQAFVQ 148
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
Y Q A+ A L+G IYDG C+L I +S +L + NN+R+RD+T PS P
Sbjct: 149 YSSRQNAIQASNTLQGRNIYDGC-CQLDIQFSNLPELQVNYNNERTRDFTNPSLP 202
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +LP + TE+++I + G ++N+K + QA I FA+ QA
Sbjct: 373 YRYCCSPTKMIHVSSLPGDVTEDDVISHLEEHGSIINSKLFEANGKKQALILFANEEQAT 432
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS+ + G T+ L +S Q I
Sbjct: 433 EALVCKHASA-----IDGSTIRLSFSQLQSI 458
>gi|426219707|ref|XP_004004060.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Ovis
aries]
Length = 526
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 135/253 (53%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 12 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 69
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + V++QYSN +E+ + +
Sbjct: 70 FLEMASEEAAVTMVNYYTPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVS 127
Query: 106 ADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFE 147
A +G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 128 AVQSGSLALPGAPTSEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 187
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 188 KNNQFQALLQYADPLNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 240
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 241 KSRDFTRLDLPTG 253
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 102/192 (53%), Gaps = 15/192 (7%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 259
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPP--PEQPMMHQPTAAGWGAVPP-ASQSMPMM 404
+P PM G ++ Y GA FAP P+ + P G GA+ P A S +
Sbjct: 260 -EP-PMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGPLAITSSAVT 317
Query: 405 GNHPYMPPGSMP 416
G G MP
Sbjct: 318 GRMAIPGAGGMP 329
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D L++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 332 SVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQLAMN 387
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 388 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 438
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 439 KNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 492
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 493 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 525
>gi|338720439|ref|XP_001490810.2| PREDICTED: regulator of differentiation 1 isoform 1 [Equus
caballus]
Length = 523
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 180/396 (45%), Gaps = 102/396 (25%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDHKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + V++QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMVNYYTPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARVQAALQAVS 126
Query: 106 ADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFE 147
A +G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGSLALPGAPTNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPLNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYTNPYLPV----------------APSAID-------------------------- 225
+SRD+T LP AP I
Sbjct: 240 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQTV 299
Query: 226 --ASGQLSV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
A G L+V + G P ++VLL + N VT L ++F +G V +
Sbjct: 300 PGALGPLAVTSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-VTPHGLFILFGVYGDVHR 358
Query: 275 IA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ MF+K AL+Q D A +A L G +Y
Sbjct: 359 VKIMFNKKE--NALVQMADANQAQLAMNHLSGQRLY 392
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 113/246 (45%), Gaps = 46/246 (18%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGL------DGKKLEPESNV 245
I YS H +L +++R + A A+ A S+ L +G L +S V
Sbjct: 99 IQYSNHRELKTDNLPNQAR------VQAALQAVSAVQSGSLALPGAPTNEGTVLPGQSPV 152
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 153 LRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDG 212
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATA 365
IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 213 QNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL------------- 258
Query: 366 NQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMH 425
E PM AA +GA P S P G + P P G G+
Sbjct: 259 -------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIGFPQGTGLSVQT 298
Query: 426 MPGQSG 431
+PG G
Sbjct: 299 VPGALG 304
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D LV+ L ++F +G VH++ F K ALVQ +D A
Sbjct: 325 IPGNSVLLVTNLNPD--LVTPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 380
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 381 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 431
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 432 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 485
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 486 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|344271491|ref|XP_003407571.1| PREDICTED: regulator of differentiation 1 [Loxodonta africana]
Length = 581
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 134/253 (52%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 69 ANGNDNKKFKGDRPPCSPSRVLHLRKIPNDVTEAEVISLGLPFGKVTNLLILKG--KSQA 126
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + VY+QYSN +E+ + +
Sbjct: 127 FLEMASEEAAVTMVNYYTPVT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAIS 184
Query: 106 ADVAGNVLLV---TIEGT-------DARL--------VSIDVLHLVFSAFGFVHKITTFE 147
A G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 185 AAQPGSLALSGAPTNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 244
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A A+ ALDG++I CTLRI +S T L+VK+ +
Sbjct: 245 KNNQFQALLQYADPVNAHYARMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 297
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 298 KSRDFTRLDLPTG 310
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 200 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 259
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A A+ AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 260 NAHYARMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 316
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 317 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFGPAIG 345
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 346 FPQAAGLSVSAVPGALG 362
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 383 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 438
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 439 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 489
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 490 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTDAGCSVKAFKFFQKDRKM 543
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 544 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 580
>gi|148224882|ref|NP_001080169.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|28278766|gb|AAH45068.1| Ptbp1 protein [Xenopus laevis]
Length = 547
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 44/235 (18%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+R LP + TE E+I LG PFGKV N G +NQAF+E A +I+YY
Sbjct: 55 SRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFLEMNTEEAANTIINYY- 111
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN-VLLVTIEGTDA 122
S+ P +RG+ +Y+QYSN +E+ + + + V+G VL + DA
Sbjct: 112 SNVAPV-LRGQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTPVLSASAAVVDA 170
Query: 123 RL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
+ V++DVL +FS FG V KI TF K FQAL+Q+ D +
Sbjct: 171 SIAMSGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPMS 230
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 231 AQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 278
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 215 PYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
P L + + +DAS + + G +S VL +EN+ Y VTLDVL +FS FG V K
Sbjct: 159 PVLSASAAVVDAS----IAMSG-----QSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLK 209
Query: 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR 334
I F KN QAL+QY D +A AK +L+G IY+ C L I +S+ T L++K NND+
Sbjct: 210 IITFTKNNQFQALLQYGDPMSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDK 268
Query: 335 SRDYTLPSTPMVNSQPSILGQQPVPMVGA----TANQYNGAQFAP 375
SRDYT P P + QP++ Q + GA + N Y GA F P
Sbjct: 269 SRDYTRPDLPSGDGQPTL--DQTIAAFGAPGLISTNPYAGAGFPP 311
>gi|431918462|gb|ELK17686.1| Regulator of differentiation 1 [Pteropus alecto]
Length = 523
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 135/253 (53%), Gaps = 45/253 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ M++YY + +R + +++QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMVNYYTPVTP--HLRSQPIFIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGNVLL---VTIEGT-------DARL--------VSIDVLHLVFSAFGFVHKITTFE 147
A +G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGSLALPGAPTNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPLNAQYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 240 KSRDFTRLDLPTG 252
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 142 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 201
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + PS+
Sbjct: 202 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGHPSL-- 258
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 259 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 287
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 288 FPQATGLSVPAVPGALG 304
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 325 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 380
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 381 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 431
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 432 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 485
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 486 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|355717047|gb|AES05805.1| ROD1 regulator of differentiation 1 [Mustela putorius furo]
Length = 497
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 127/234 (54%), Gaps = 42/234 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A A+ M++YY
Sbjct: 3 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMVNYY 60
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLL---VTIEG 119
+ +R + V++QYSN +E+ + +A +G++ L T EG
Sbjct: 61 TPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALPGAPTNEG 118
Query: 120 TD-------ARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
T R+ V+++VLH +FS FG V KI TF K FQAL+Q++D A
Sbjct: 119 TILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNA 178
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
AK ALDG++I CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 179 HYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 225
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 117 EGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 176
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 177 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 233
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWGAVPPA 397
+P PM G ++ Y GA FAP HQ T AVP A
Sbjct: 234 -EP-PMAAAFGAPGIISSPYAGAAGFAPAIG----FHQATGLSVPAVPGA 277
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 300 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 355
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 356 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 406
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 407 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 460
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 461 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 497
>gi|432101132|gb|ELK29416.1| Polypyrimidine tract-binding protein 1 [Myotis davidii]
Length = 566
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 186/410 (45%), Gaps = 110/410 (26%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 60 RSTGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 117
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTAD------ 107
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + +
Sbjct: 118 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLSLAAS 175
Query: 108 ---------VAGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHK-------------- 142
+AG VL + +E V++DVLH +FS FG V K
Sbjct: 176 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 234
Query: 143 -------------ITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
I TF K FQAL+Q+++ +A AK +LDG++I CT
Sbjct: 235 QYAEPVSAQHAKLIITFTKNKQFQALLQYAEPVSAQHAKLSLDGQNIYN-------ACCT 287
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE------- 240
LRI +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 288 LRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLA 347
Query: 241 ---------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MF 278
++VLL S N + VT L ++F +G VQ++ +F
Sbjct: 348 IPSAAAAAAAAGRIAIPGLGGAGNSVLLVSNLNPE-VVTPQSLFILFGVYGDVQRVKILF 406
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
+K AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 407 NKKE--NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQNVQL 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 28/144 (19%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD--- 292
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY +
Sbjct: 182 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVS 241
Query: 293 VQTAVV------------------------AKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
Q A + AK +L+G IY+ C L I +S+ T L++
Sbjct: 242 AQHAKLIITFTKNKQFQALLQYAEPVSAQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNV 300
Query: 329 KVNNDRSRDYTLPSTPMVNSQPSI 352
K NND+SRDYT P P +SQPS+
Sbjct: 301 KYNNDKSRDYTRPDLPSGDSQPSL 324
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + +V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 369 AGNSVLL-VSNLNPEVVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 425
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 426 MSHLNGHKL-------HGKP--VRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 476
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +++ D L ++FS+ G + K F + AL
Sbjct: 477 GSKNF----QNIFPPSATL--HLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMAL 530
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 531 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 565
>gi|116175255|ref|NP_001070683.1| regulator of differentiation 1 [Sus scrofa]
gi|115371761|gb|ABI96205.1| ROD1 [Sus scrofa]
Length = 523
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 128/254 (50%), Gaps = 47/254 (18%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 9 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 66
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI------------------- 99
F+E A A+ M++YY + +R + V++QYSN +E+
Sbjct: 67 FLEMASEEAAVTMVNYYTPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVS 124
Query: 100 -------------VNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF 146
N T VL + IE V+++VLH +FS FG V KI TF
Sbjct: 125 AVQSGSLGLPGAPTNEGTILPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITF 183
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 184 TKNNQFQALLQYADPLNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNN 236
Query: 207 HRSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 237 DKSRDFTRLDLPTG 250
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 95/171 (55%), Gaps = 14/171 (8%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 140 EGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPL 199
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 200 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 256
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPP--PEQPMMHQPTAAGWGAVPP 396
+P PM G ++ Y GA FAP P+ + P G GA+ P
Sbjct: 257 -EP-PMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAGLGPGALGP 305
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 23/222 (10%)
Query: 105 TADVAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTE 162
T + GN VLLVT D LV+ L ++F +G VH++ F K ALVQ +D
Sbjct: 322 TGGIPGNSVLLVTNLNPD--LVTPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADAN 377
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
A A N L G+ + +L R T S H + + + + T +
Sbjct: 378 QAQLAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLH 428
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 429 RFKKPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKD 482
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 483 RKMALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>gi|345323919|ref|XP_001506947.2| PREDICTED: polypyrimidine tract-binding protein 1 [Ornithorhynchus
anatinus]
Length = 707
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 44/239 (18%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M+SYY
Sbjct: 208 SRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVSYYT 265
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGNVLL-VTIEGTDA 122
+ + +R + +++Q+SN +E+ + + + +GN+ L + DA
Sbjct: 266 TVA--PVLRSQPIFIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNMALSASAAAVDA 323
Query: 123 RL-------------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
+ V++DVLH +FS FG V KI TF K FQAL+Q+++ +
Sbjct: 324 GMAIAGLSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPMS 383
Query: 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 384 AQHAKLSLDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 435
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 94/166 (56%), Gaps = 15/166 (9%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N L + +A+DA G GL S VL +EN+ Y VTLDVLH +FS FG V
Sbjct: 311 NMALSASAAAVDA-GMAIAGL--------SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL 361
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F KN QAL+QY + +A AK +L+G IY+ C L I +S+ T L++K NND
Sbjct: 362 KIITFTKNNQFQALLQYAEPMSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNND 420
Query: 334 RSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TANQYNGAQFAP 375
+SRDYT P P +SQPS L Q GA +A+ Y GA F P
Sbjct: 421 KSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIISASPYAGAGFPP 465
>gi|410928343|ref|XP_003977560.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Takifugu
rubripes]
Length = 534
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 32/223 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+R LP + TE E+I LG PFG V N + +NQAF+E + A M+ YY
Sbjct: 48 PSKVVHIRKLPDDITETEVISLGLPFGNVSNLL--MLKTKNQAFLEMNCEDAACNMVGYY 105
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT--------------------TADVAGNVLLV 115
S+ P +R + VY+Q+SN +E+ + + A + +VL V
Sbjct: 106 -STVMPV-IRHQPVYVQFSNHKELKTDNSPNQERAQAALRAFGASHMAPCAVASSSVLRV 163
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
+E VS+D L +FS FG V +I F K + FQAL+Q+ D A +AK +LDG++
Sbjct: 164 VVENL-LYPVSLDALCQIFSKFGTVLRIIVFTKNSQFQALLQYPDAACAQAAKLSLDGQN 222
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
I CTLRI++S T L+VK+ + +SRD+T P LP
Sbjct: 223 IYN-------ACCTLRISFSKLTSLNVKYNNEKSRDFTRPDLP 258
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 12/182 (6%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
S+VL +EN+ Y V+LD L +FS FG V +I +F KN QAL+QYPD A AK +
Sbjct: 158 SSVLRVVVENLLYPVSLDALCQIFSKFGTVLRIIVFTKNSQFQALLQYPDAACAQAAKLS 217
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L+G IY+ C L IS+S+ T L++K NN++SRD+T P P + QP++
Sbjct: 218 LDGQNIYNAC-CTLRISFSKLTSLNVKYNNEKSRDFTRPDLPPGDGQPTLEHPSMAAAFA 276
Query: 363 A----TANQYNGA--QFAPPPPEQPMMHQPTAA-GWGAVPPASQSMPMMG----NHPYMP 411
A +A Y GA F+P QP + P A A+P A S+ + G P +P
Sbjct: 277 APGIISAAPYAGAAQTFSPSYTIQPAVFLPPAGVTVPALPGALTSLSLAGAARMGFPSLP 336
Query: 412 PG 413
G
Sbjct: 337 AG 338
>gi|147906715|ref|NP_001083815.1| polypyrimidine tract binding protein 1 [Xenopus laevis]
gi|6002571|gb|AAF00041.1|AF091370_1 hnRNP I-related RNA transport protein VgRBP60 [Xenopus laevis]
Length = 552
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 124/236 (52%), Gaps = 46/236 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+HLR LP + TE E+I LG PFGKV N G +NQAF+E + A MISYY
Sbjct: 61 SRVIHLRKLPGDVTEAEVISLGLPFGKVTNILMLKG--KNQAFLEMSTEEAANTMISYYT 118
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN------------ 111
+ + P +R + +Y+QYSN +E+ + + + V+G
Sbjct: 119 NVA-PV-LRSQPIYIQYSNHKELKTDDSPNQARAQAALQAVNSVVSGTTALSASAAAVDV 176
Query: 112 ---------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
VL + +E V++DVL +FS FG V KI TF K FQAL+Q+ D
Sbjct: 177 GIAMSGQSPVLRIIVENL-FYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPV 235
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 236 SAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 284
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVL +FS FG V KI F KN QAL+QY D +
Sbjct: 177 GIAMSGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVS 236
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P + QPS+
Sbjct: 237 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSL--D 293
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
Q + GA +AN Y GA F P
Sbjct: 294 QTIAAFGAPGLISANPYAGAGFHP 317
>gi|403266191|ref|XP_003925277.1| PREDICTED: polypyrimidine tract-binding protein 3 [Saimiri
boliviensis boliviensis]
Length = 558
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFG+V N + + QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLL--MLKEKRQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 293
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 294 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 322
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 323 FPQATGLSVPAVPGALG 339
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 416 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|67678144|gb|AAH97557.1| VgRBP60 protein [Xenopus laevis]
Length = 472
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 124/236 (52%), Gaps = 46/236 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+HLR LP + TE E+I LG PFGKV N G +NQAF+E + A MISYY
Sbjct: 61 SRVIHLRKLPGDVTEAEVISLGLPFGKVTNILMLKG--KNQAFLEMSTEEAANTMISYYT 118
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN------------ 111
+ + P +R + +Y+QYSN +E+ + + + V+G
Sbjct: 119 NVA-PV-LRSQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDV 176
Query: 112 ---------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
VL + +E V++DVL +FS FG V KI TF K FQAL+Q+ D
Sbjct: 177 GIAMSGQSPVLRIIVENL-FYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPV 235
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 236 SAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 284
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVL +FS FG V KI F KN QAL+QY D +
Sbjct: 177 GIAMSGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVS 236
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P + QPS+
Sbjct: 237 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSL 292
>gi|390458239|ref|XP_003732081.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 2
[Callithrix jacchus]
Length = 524
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFG+V N + + QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLL--MLKEKRQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 77 EAAVTMVNYYTPFTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 134
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 135 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 194
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 195 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 247
Query: 215 PYLPVA 220
LP
Sbjct: 248 LDLPTG 253
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 143 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 202
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 203 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 259
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 326 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 381
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 382 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 432
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 433 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKM 486
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 487 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 523
>gi|296190586|ref|XP_002743247.1| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1
[Callithrix jacchus]
Length = 558
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFG+V N + + QAF+E A
Sbjct: 53 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGRVTNLL--MLKEKRQAFLEMASE 110
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 111 EAAVTMVNYYTPFTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 168
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 169 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 228
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 229 LLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTR 281
Query: 215 PYLPVA 220
LP
Sbjct: 282 LDLPTG 287
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 236
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 237 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 293
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 360 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 415
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 416 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 466
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 467 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDGLKNLFIEAGCSVKAFKFFQKDRKM 520
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 521 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 557
>gi|348522752|ref|XP_003448888.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Oreochromis
niloticus]
Length = 654
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 121/222 (54%), Gaps = 30/222 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFG V N + +NQAF+E A ++ YY
Sbjct: 174 PSRVIHIRKLPSDITEAEVISLGVPFGDVTNLL--MLKAKNQAFLEMNSEEAAQNLVGYY 231
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------------TADVAGNVLLVT 116
S+ +R VY+Q+SN +E+ + + TA VA + +L
Sbjct: 232 --STMVPIIRHHPVYVQFSNHKELKTDNSPNQERAQAALRALSSSHVDTAAVAPSTVLRV 289
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
+ V++D L +FS FG V +I F K FQAL+Q+SD +A +AK +LDG++I
Sbjct: 290 VVENLIYPVTLDALCQIFSKFGTVLRIIIFTKNNQFQALLQYSDGASAQAAKLSLDGQNI 349
Query: 177 PRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
G CTLRI++S T L+VK+ + +SRD+T P LP
Sbjct: 350 YN-------GCCTLRISFSKLTSLNVKYNNEKSRDFTRPDLP 384
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 12/214 (5%)
Query: 197 HTDLSVKFQSHRSRDYTN-PYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQY 255
H + V+F +H+ N P A +A+ A S +D + P S VL +EN+ Y
Sbjct: 240 HHPVYVQFSNHKELKTDNSPNQERAQAALRALS--SSHVDTAAVAP-STVLRVVVENLIY 296
Query: 256 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315
VTLD L +FS FG V +I +F KN QAL+QY D +A AK +L+G IY+G C
Sbjct: 297 PVTLDALCQIFSKFGTVLRIIIFTKNNQFQALLQYSDGASAQAAKLSLDGQNIYNGC-CT 355
Query: 316 LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TANQYNGA 371
L IS+S+ T L++K NN++SRD+T P P + QP++ A +A Y GA
Sbjct: 356 LRISFSKLTSLNVKYNNEKSRDFTRPDLPTGDGQPTMEHTAMATAFAAPGIISAAPYAGA 415
Query: 372 QFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMG 405
A PP QP A+P A S+ + G
Sbjct: 416 THAFPP---AFTLQPAGLAVPALPGALASLSLPG 446
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AG+ +L+ + + V+ L ++F +G V ++ F K ALVQ SD+ A A
Sbjct: 457 AGHSVLL-VSNLNPERVTPHCLFILFGVYGDVMRVKILFNKKE--NALVQMSDSTQAQLA 513
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSA 223
+ L+G + + +RIT S HT + + + H ++DY+N P+
Sbjct: 514 MSHLNG---------QRLHGKPVRITLSKHTSVQLPREGHEDQGLTKDYSNS--PLHRFK 562
Query: 224 IDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
S S + P S L + N+ +V D L M+F++ G V K F +
Sbjct: 563 KPGSKNYS------NIFPPSATL--HLSNIPPSVVEDDLKMLFASSGAVVKAFKFFQKDH 614
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
ALIQ V+ A+ + +E H G L +S+S+
Sbjct: 615 KMALIQVGSVEEAI--ESLIEFHNHDLGENHHLRVSFSK 651
>gi|297275606|ref|XP_001092214.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 530
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK + DG++I CTLR + + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSQDGQNIYN-------ACCTLRXXXXXXXXXXXXYNNDKSRDYTRPD 278
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 279 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 338
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 339 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNG 395
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 396 HKLHGK---PIRITLSKHQNVQL 415
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK + +G IY+ C L NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSQDGQNIYN-ACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDSQPSL 288
>gi|221126625|ref|XP_002156158.1| PREDICTED: polypyrimidine tract-binding protein 3-like [Hydra
magnipapillata]
Length = 494
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 71/383 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
+ Q PSKV+H+R +P + TE E+ LG PFG+V N + +++QAF+E D++ A
Sbjct: 25 KQDQTPSKVIHIRQIPMDATEPEIKSLGLPFGEVTNML--LMRSKSQAFLELQDVDCAKT 82
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGN--------VLLVTIE 118
MI+YY S +R + V+LQ+S QE+ NN +D G+ +L I
Sbjct: 83 MINYYTYVS--PTIRNQPVFLQFSQHQELRTNNQNNHRDSDRNGDSDSRPHGGCVLKVIV 140
Query: 119 GTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 178
V+IDVL VF G + K+ TF + F AL+Q+S+++ AS+AK D ++I
Sbjct: 141 TNIIYPVTIDVLQQVFQRCGEIQKVVTFIRNDQFHALIQYSNSKEASAAKVLFDKQNIYN 200
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP------YLPVAPSAIDAS---GQ 229
G TL + +S ++L VKF + + RD+T P L V A+ A G
Sbjct: 201 -------GCNTLHVEFSKMSELVVKFNNEKMRDFTKPDKSNYDNLNVQLQAMQAQMNPGM 253
Query: 230 LSV-----------GLDG--------KKLEPESN-------------VLLASIENMQYAV 257
L V G + L P +N VLL S N + +
Sbjct: 254 LPVPSSFPPQLFTQGFNFGGGFPNMMGSLSPNNNFNQNIGGGNRQVSVLLVSNLN-ENEI 312
Query: 258 TLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
+ D L ++F +G V ++ +F+K ALIQ+ D Q A A + L ++ ++
Sbjct: 313 SCDDLFILFGHYGDVLRVKILFNKKDT--ALIQFADAQQASTALQNLNNVTLFGN---EM 367
Query: 317 HISYSRHTDLSIKVNNDRSRDYT 339
+S S+H + + ++D ++ T
Sbjct: 368 RVSRSKHDYVHMPKSDDEGKELT 390
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL + N+ Y VT+DVL VF G +QK+ F +N ALIQY + + A AK +
Sbjct: 135 VLKVIVTNIIYPVTIDVLQQVFQRCGEIQKVVTFIRNDQFHALIQYSNSKEASAAKVLFD 194
Query: 305 GHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLP 341
IY+G C LH+ +S+ ++L +K NN++ RD+T P
Sbjct: 195 KQNIYNG--CNTLHVEFSKMSELVVKFNNEKMRDFTKP 230
>gi|196010463|ref|XP_002115096.1| hypothetical protein TRIADDRAFT_28601 [Trichoplax adhaerens]
gi|190582479|gb|EDV22552.1| hypothetical protein TRIADDRAFT_28601, partial [Trichoplax
adhaerens]
Length = 476
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 177/381 (46%), Gaps = 87/381 (22%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNT-KCNVGANRNQAFIEFADLNQAIAMISYY 75
S+V+H+RN+P + ++ E+ LG PFGKV N + N +NQ F+E D N+ M++YY
Sbjct: 1 SRVIHIRNIPTDSSDVEIAALGVPFGKVTNILRLNA---KNQCFLELEDENKTRKMMNYY 57
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--------------------------- 108
+ +RG VY+QYSN ++V + + + +
Sbjct: 58 KYVA--PNLRGHPVYMQYSNHTQLVTDSSRSKIAAISSSSPPLNPLDSEVSLKSNELMTV 115
Query: 109 ------AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
AG VL ++I+ V++D+L+ +FS FG V KI TF K +QAL+QF+D
Sbjct: 116 GSASPEAGRVLHISIDNL-VYPVTLDILNQIFSKFGVVEKIITFTKNNLYQALIQFTDAV 174
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-------NP 215
A +AK +LDG+SI G CTL+I YS ++VK+ + +SRD+T NP
Sbjct: 175 DAQNAKLSLDGQSI-------YYGCCTLKIDYSKLLSINVKYNNDKSRDFTKNVTTRINP 227
Query: 216 YLPVAPSAIDASGQLS---VGLDGKKLEPESNVLLASIE------NMQY----------- 255
AI + LS L+ S++L A I+ N+ Y
Sbjct: 228 TAGATSIAIPVATILSPLTAIATTSPLQSTSDLLTAPIQQQLSEGNLGYDNSSYVGSVIH 287
Query: 256 -------AVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
VT L ++F +G V ++ +F+K ALIQ + A A L G
Sbjct: 288 VTNLNEAKVTPRALFILFGVYGDVYRVKILFNKKD--TALIQMAEPHQAQTAIAHLHGIQ 345
Query: 308 IYDGGFCKLHISYSRHTDLSI 328
+Y K+ +S S++ + +
Sbjct: 346 LYGK---KMFVSSSKYAQVQL 363
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Query: 241 PES-NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
PE+ VL SI+N+ Y VTLD+L+ +FS FG V+KI F KN QALIQ+ D A A
Sbjct: 120 PEAGRVLHISIDNLVYPVTLDILNQIFSKFGVVEKIITFTKNNLYQALIQFTDAVDAQNA 179
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN 347
K +L+G IY G C L I YS+ +++K NND+SRD+T T +N
Sbjct: 180 KLSLDGQSIY-YGCCTLKIDYSKLLSINVKYNNDKSRDFTKNVTTRIN 226
>gi|268532214|ref|XP_002631235.1| C. briggsae CBR-PTB-1 protein [Caenorhabditis briggsae]
Length = 610
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 131/241 (54%), Gaps = 33/241 (13%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T P S+V+H+RN+P + + EL++L +G V N G ++QAF+E+ + A A +
Sbjct: 112 TTPVSRVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKG--KSQAFVEYEEETSAAAFV 169
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIV---NNKTTADVAG-----------------NV 112
+ ++ P Q+RG+T++ QYS +E+ +NK T+D N
Sbjct: 170 T--GMTAVPIQIRGRTLFAQYSTHRELKFDKSNKATSDTESVANGSVSNFEVGTQQQPNS 227
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
+L TI VS++VLH +F+ +G V +I TF K FQAL+Q S+ +A AK L+
Sbjct: 228 VLRTIIENMMFPVSLEVLHQLFARYGKVLRIITFNKNNTFQALIQMSEANSAQLAKQGLE 287
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
+++ G CTLRI YS + L+VK+ + +SRDYTNP LP P + Q+++
Sbjct: 288 NQNVYN-------GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP--PGEMTLEQQIAI 338
Query: 233 G 233
Sbjct: 339 S 339
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTL 259
L ++ +HR + + + A+G +S G + +P S VL IENM + V+L
Sbjct: 184 LFAQYSTHRELKFDKSNKATSDTESVANGSVSNFEVGTQQQPNS-VLRTIIENMMFPVSL 242
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
+VLH +F+ +G V +I F+KN QALIQ + +A +AK+ LE +Y+G C L I
Sbjct: 243 EVLHQLFARYGKVLRIITFNKNNTFQALIQMSEANSAQLAKQGLENQNVYNGC-CTLRID 301
Query: 320 YSRHTDLSIKVNNDRSRDYTLPSTP 344
YS+ + L++K NND+SRDYT P+ P
Sbjct: 302 YSKLSTLNVKYNNDKSRDYTNPNLP 326
>gi|58331982|ref|NP_001011140.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|54261503|gb|AAH84469.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
gi|89272472|emb|CAJ82472.1| polypyrimidine tract binding protein 1 [Xenopus (Silurana)
tropicalis]
Length = 554
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 46/236 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+R LP + TE E+I LG PFGKV N G +NQAF+E A MI+YY
Sbjct: 61 SRVIHVRKLPGDVTEAEVISLGLPFGKVTNLLMLKG--KNQAFLEMNTEEAANTMINYYT 118
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGN------------ 111
+ + P +R + +Y+QYSN +E+ + + + V+G
Sbjct: 119 NVA-PV-LRSQPIYIQYSNHKELKTDNSPNQARAQAALQAVNSVVSGTTALSASAAAVDA 176
Query: 112 ---------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
VL + +E V++DVL +FS FG V KI TF K FQAL+Q+ D
Sbjct: 177 GMAMSGQSPVLRIIVENL-FYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPV 235
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 236 SAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 284
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVL +FS FG V KI F KN QAL+QY D +
Sbjct: 177 GMAMSGQSPVLRIIVENLFYPVTLDVLQQIFSKFGTVLKIITFTKNNQFQALLQYGDPVS 236
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P + QPS+
Sbjct: 237 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDGQPSL--D 293
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
Q + GA +AN Y A F P
Sbjct: 294 QTIAAFGAPGLISANPYASAGFPP 317
Score = 38.1 bits (87), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 21/218 (9%)
Query: 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASS 166
+ GN +L+ + + V+ L ++F +G VH++ F K ALVQ +D A
Sbjct: 356 IPGNSVLL-VSNLNPERVTPQCLFILFGVYGDVHRVKILFNKKE--NALVQMADGNQAQL 412
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226
A + L+G + + LRIT S H + + + + T Y
Sbjct: 413 AMSHLNG---------QRLHGKPLRITVSKHQTVQLPREGQEDQGLTKDYSTSPLHRFKK 463
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
G + + + P S L + N+ +V+ + L M+FS G K F + A
Sbjct: 464 PGSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKMLFSNNGYTVKGFKFFQKDRKMA 517
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
LIQ V+ A+ + L H + G L +S+S+ T
Sbjct: 518 LIQMGSVEEAIESLIELHNHDM--GENHHLRVSFSKST 553
>gi|383854460|ref|XP_003702739.1| PREDICTED: polypyrimidine tract-binding protein 2-like [Megachile
rotundata]
Length = 552
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 36/206 (17%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG------- 110
AF+E AD N A ++SYYAS AQ+RG+ VY+Q+SN +E+ ++T A+ A
Sbjct: 12 AFLEMADENAAATIVSYYASCI--AQLRGRPVYVQFSNHRELKTDQTHANNANSNNQVAL 69
Query: 111 -----------------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQ 153
N +L I +S+DVL+ +F+ FG V KI TF K + FQ
Sbjct: 70 PGQNQVAQTQAETQGGPNTVLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNSTFQ 129
Query: 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
AL+Q++D +A +AK +L+G++I CTLRI YS +L+VK+ + +SRDYT
Sbjct: 130 ALIQYADMLSAQTAKLSLEGQNIYN-------SCCTLRIDYSKMQNLNVKYNNDKSRDYT 182
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKL 239
NP LP + +DA+ S+ L G+ L
Sbjct: 183 NPSLPTGDANLDAA---SLALGGELL 205
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL +E M Y ++LDVL+ +F+ FG V KI F KN QALIQY D+ +A AK +
Sbjct: 87 NTVLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNSTFQALIQYADMLSAQTAKLS 146
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LEG IY+ C L I YS+ +L++K NND+SRDYT PS P
Sbjct: 147 LEGQNIYNSC-CTLRIDYSKMQNLNVKYNNDKSRDYTNPSLP 187
>gi|218188676|gb|EEC71103.1| hypothetical protein OsI_02887 [Oryza sativa Indica Group]
Length = 796
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 57/61 (93%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S QPQFRYTQPPSKV+HLRNLPW+CTEEEL+ELG PFGKVVNTKCNVGANRNQAF+EF
Sbjct: 3 SGQPQFRYTQPPSKVIHLRNLPWDCTEEELVELGSPFGKVVNTKCNVGANRNQAFVEFVP 62
Query: 65 L 65
L
Sbjct: 63 L 63
>gi|354504485|ref|XP_003514305.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
Length = 322
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 28/228 (12%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R+LP + TE+E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSTGVPSRVIHVRSLPSDVTEDEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN--VLLVTIEGTDARLVSID 128
M++YY + + +AG VL + +E V++D
Sbjct: 109 MVNYYXXN--------------LALAASAAAVDAGMAMAGQSPVLRILVENL-FYPVTLD 153
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I + C
Sbjct: 154 VLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLDGQNIYK-------AWC 206
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 234
+LRI +S T L VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 207 SLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 254
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 129 GMAMAGQSPVLRILVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVS 188
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY +C L I +S+ T L +K NND+SRDYT P P +SQPS+
Sbjct: 189 AQHAKLSLDGQNIYK-AWCSLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSL 244
>gi|410978917|ref|XP_003995834.1| PREDICTED: polypyrimidine tract-binding protein 3 [Felis catus]
Length = 540
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 115/222 (51%), Gaps = 38/222 (17%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 83 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 140
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE 118
F+E A A+ M++YY + +R + V++QYSN +E+ +
Sbjct: 141 FLEMASEEAAVTMVNYYTPVT--PHLRSQPVFIQYSNHRELKTDNLPNQA---------- 188
Query: 119 GTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 178
+FS FG V KI TF K FQAL+Q++D A AK ALDG++I
Sbjct: 189 --------------IFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN 234
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 235 -------ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTG 269
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 265 VFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
+FS FG V KI F KN QAL+QY D A AK AL+G IY+ C L I +S+ T
Sbjct: 189 IFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN-ACCTLRIDFSKLT 247
Query: 325 DLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV------GATANQYNGAQ-FAPPP 377
L++K NND+SRD+T P + QPS+ +P PM G ++ Y GA FAP
Sbjct: 248 SLNVKYNNDKSRDFTRLDLPTGDGQPSL---EP-PMAAAFGAPGIISSPYAGAAGFAPAI 303
Query: 378 PEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGM 432
HQ T AVP A + P ++ +M +PG SG+
Sbjct: 304 G----FHQATGISVPAVPGA------------LGPLTITSSAVTGRMAIPGTSGV 342
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query: 105 TADVAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTE 162
T+ V GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D
Sbjct: 339 TSGVPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADAS 394
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
A A N L G+ + +L R T S H + + + + T +
Sbjct: 395 QAQLAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLH 445
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 446 RFKKPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKD 499
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 500 RKMALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 539
>gi|351706875|gb|EHB09794.1| Polypyrimidine tract-binding protein 1 [Heterocephalus glaber]
Length = 543
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 173/373 (46%), Gaps = 74/373 (19%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I L PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLVLPFGKVTNLLMVKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA-------- 122
M++YY S + P +RG+ +Y+Q+SN +E+ + + L T+ +
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQTVNSVQSGNLALAAS 167
Query: 123 -----------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVLH +FS FG V KI TF K + FQAL+Q
Sbjct: 168 VAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQ 227
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
++D +A A+ +LD ++I CTL I +S T L+VK+ +SR P
Sbjct: 228 YADPVSAQHARLSLDRQNIYNTC-------CTLSIDFSKLTSLNVKYNYDKSRAGFPPTF 280
Query: 218 PVAPSAIDAS-----GQLS----------------VGLDGKKLEPESNVLLASIENMQYA 256
+ P A S G L+ +G+ G S VLL S N +
Sbjct: 281 DI-PQAAGLSVPKVHGALAPLAIPSAAAAAAVAGRIGIPGLGAAGNS-VLLVSNLNPE-R 337
Query: 257 VTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315
VT L ++F G VQ++ +F+K AL+Q D A +A L+GH ++
Sbjct: 338 VTPQSLFILFGVHGDVQRVKILFNKKE--NALVQMADGSRAQLAMSHLDGHKLHGK---P 392
Query: 316 LHISYSRHTDLSI 328
+ I+ S+H ++ +
Sbjct: 393 IRITLSKHQNVQL 405
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNSQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 336
A A+ +L+ IY+ C L I +S+ T L++K N D+SR
Sbjct: 234 AQHARLSLDRQNIYN-TCCTLSIDFSKLTSLNVKYNYDKSR 273
>gi|297275604|ref|XP_002801040.1| PREDICTED: polypyrimidine tract-binding protein 1 [Macaca mulatta]
Length = 549
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 177/406 (43%), Gaps = 110/406 (27%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK + DG++I CTLR + + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSQDGQNIYNAC-------CTLRXXXXXXXXXXXXYNNDKSRDYTRPD 278
Query: 217 LPVAPS-------------------------AIDASGQLSV------------------- 232
LP S AI + LSV
Sbjct: 279 LPSGDSQPSLDQTMAAAFASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAA 338
Query: 233 ---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNG 282
GL G ++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 339 AAAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE 393
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 394 --NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 434
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK + +G IY+ C L NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSQDGQNIYN-ACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDSQPSL--- 288
Query: 356 QPVPMVGATANQYNGAQFAP 375
M A A+ Y GA F P
Sbjct: 289 -DQTMAAAFASPYAGAGFPP 307
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 352 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 408
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 409 MSHLNGHKL--HGKP-------IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 459
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ + L ++FS+ G V K F + AL
Sbjct: 460 GSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 513
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 514 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 548
>gi|242023546|ref|XP_002432193.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus
corporis]
gi|212517590|gb|EEB19455.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus
corporis]
Length = 513
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 44/226 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + +E E+I LG PFG+V N G +NQ E + A M+SY+
Sbjct: 27 PSKVIHIRNIPSDVSEPEIIHLGIPFGRVTNVLVLKG--KNQVRYELS----ASEMVSYF 80
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT--------------------TADVAG---NV 112
S + AQ+RG+ V++Q+SN +E+ ++T + D G V
Sbjct: 81 TSCA--AQLRGRAVFVQFSNHKELKTDQTHSNANASAQAALQAAQALSGSIDTQGGPNTV 138
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
L V IE V++DVL+ V + T + FQAL+Q+ D TA +AK +LD
Sbjct: 139 LRVIIEHM-VYPVTLDVLYKVRRKI-----LLTRQSFRSFQALIQYPDVITAQAAKLSLD 192
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
GR+I CTLRI YS + L+VK+ + +SRDYTNP LP
Sbjct: 193 GRNIYN-------SCCTLRIEYSKLSALNVKYNNDKSRDYTNPNLP 231
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 8/101 (7%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEAL 303
VL IE+M Y VTLDVL+ V +KI + ++ QALIQYPDV TA AK +L
Sbjct: 138 VLRVIIEHMVYPVTLDVLYKV------RRKILLTRQSFRSFQALIQYPDVITAQAAKLSL 191
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+G IY+ C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 192 DGRNIYNSC-CTLRIEYSKLSALNVKYNNDKSRDYTNPNLP 231
>gi|413955319|gb|AFW87968.1| hypothetical protein ZEAMMB73_683995, partial [Zea mays]
Length = 81
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 69/81 (85%)
Query: 211 DYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 270
DY NPYLP+ SA+D + Q +VG DG+++E + NVLLASIENMQYAVT+DVLH VFS+FG
Sbjct: 1 DYNNPYLPINYSAMDGTLQPAVGADGRQVEAQGNVLLASIENMQYAVTVDVLHTVFSSFG 60
Query: 271 PVQKIAMFDKNGGLQALIQYP 291
VQKIA+F+KNGG QALIQYP
Sbjct: 61 SVQKIAIFEKNGGTQALIQYP 81
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQF 158
GNVLL +IE V++DVLH VFS+FG V KI FEK G QAL+Q+
Sbjct: 33 GNVLLASIENMQ-YAVTVDVLHTVFSSFGSVQKIAIFEKNGGTQALIQY 80
>gi|357443611|ref|XP_003592083.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355481131|gb|AES62334.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 407
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 156/309 (50%), Gaps = 51/309 (16%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGN 111
+NQA I+ D+ A++ + +Y ++ +P+ +RG+ VY+Q+S+ QE+ ++ D
Sbjct: 5 KNQALIQMQDVPSAVSALHFYGNT-QPS-IRGRNVYVQFSSHQELTTIDQSQGRGDEPNR 62
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+LLVTI +++DVL+ VFS G V KI TF+K+AGFQAL+Q+ +++ +A+ AL
Sbjct: 63 ILLVTIHHV-LYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQSSITARTAL 121
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--------- 222
GR+I G C L I +S +L V + + RSRD+TNP LP
Sbjct: 122 QGRNIYD-------GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPPQLGYG 174
Query: 223 ------AIDASGQLSVGLD------------GKKLEP------ESNVLLASIENMQYAVT 258
+ SG +VG G L P + LL S N +
Sbjct: 175 DAGNMYGVQGSGPRTVGYPQMPNAAAIAAAFGGGLPPGITGTNDRCTLLVSNLNPD-RID 233
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
D L +FS +G + +I + +N ALIQ D A +A L+G ++D +L +
Sbjct: 234 EDKLFNLFSLYGNIVRIKLL-RNKPDHALIQMGDGFQAELAVHFLKGAMLFDK---RLEV 289
Query: 319 SYSRHTDLS 327
++S+H +++
Sbjct: 290 NFSKHPNIT 298
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G+ EP + +LL +I ++ Y +T+DVL+ VFS G V+KI F K+ G QALIQY Q+
Sbjct: 55 GRGDEP-NRILLVTIHHVLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSQQS 113
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
++ A+ AL+G IYD G C+L I +S +L + NNDRSRD+T P+ P G+
Sbjct: 114 SITARTALQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQK-----GR 167
Query: 356 QPVPMVGATANQYNGAQFAPPP----PEQPMMHQPTAAGWGAVPPA 397
P G N Y G Q + P P+ P AA G +PP
Sbjct: 168 PPQLGYGDAGNMY-GVQGSGPRTVGYPQMPNAAAIAAAFGGGLPPG 212
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++HL LP + TE+E++ L + G +VN+K + Q ++F +QA
Sbjct: 322 YRYCCSPTKMIHLSTLPQDITEDEIVTLLEEHGTIVNSKVFEMNGKKQGLVQFETEDQAT 381
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +A+S + G + + YS Q I
Sbjct: 382 EALVCKHATS-----LSGSVIRISYSQLQNI 407
>gi|359480737|ref|XP_003632518.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 2 [Vitis vinifera]
Length = 412
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 105/172 (61%), Gaps = 18/172 (10%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN-------NKTTAD 107
+NQA ++ D+ A++ + YYA+ +P+ VRG+ VY+Q+S+ QE+ K D
Sbjct: 5 KNQALLQMQDVASAVSALQYYANV-QPS-VRGRNVYVQFSSHQELTTMDQNSQGRKGDQD 62
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
N +LLVTI ++++VLH VFS GFV KI TF+K+AGFQAL+Q+ ++A S
Sbjct: 63 AQPNRILLVTIHHL-LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVS 121
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
A NAL GR+I G C L I +S T+L V + + RSRD+TNP LP
Sbjct: 122 AINALQGRNIYD-------GCCQLDIQFSNLTELQVNYNNERSRDFTNPSLP 166
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
Q S G G + + +LL +I ++ Y +T++VLH VFS G V+KI F K+ G QALI
Sbjct: 52 QNSQGRKGDQDAQPNRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALI 111
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
QY Q+AV A AL+G IYD G C+L I +S T+L + NN+RSRD+T PS P
Sbjct: 112 QYQSRQSAVSAINALQGRNIYD-GCCQLDIQFSNLTELQVNYNNERSRDFTNPSLP 166
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ LP + TEEE++ + G +VNTK + QA + F QA
Sbjct: 327 YRYCCSPTKMIHVSTLPQDITEEEIVTHLEKHGSIVNTKLFEANGKKQALVLFETEEQAT 386
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++ +AS + G T+ + +S Q I
Sbjct: 387 EALVCKHASL-----IDGSTIRISFSQLQAI 412
>gi|390332444|ref|XP_003723502.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 5
[Strongylocentrotus purpuratus]
Length = 555
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 86/375 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 81 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 138
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNN--KTTADVAGNVLL------------------- 114
+ P V G+ +Y Q+S +E+ + T +A V L
Sbjct: 139 --THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQPHPMLQQHP 196
Query: 115 --------------------VTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
V +E + +++D LH +F +G V +I TF K+ FQA
Sbjct: 197 QHATHPKVPDTGGGVNTILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQA 255
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
LVQFSD A+ AK LDG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 256 LVQFSDASQAAVAKLELDGKNIYN-------NCCQLRIDFSKLTNLSVKYNNEKSRDYTC 308
Query: 215 ---------------------PYLPVAPSAI---DASGQLSVGLDGKKLEPESNVLLASI 250
P P SA+ A+ + + G + S+V+L S
Sbjct: 309 DLPQGDGLTGVDPSTAAMLGVPGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVS- 367
Query: 251 ENMQ-YAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
N+ VT L +F +G VQ++ +++K ALIQ D + +A + L G +
Sbjct: 368 -NLTPELVTPQALFTLFGVYGDVQRVKILYEKRDN--ALIQMSDPNQSQLAMKHLSGVKL 424
Query: 309 YDGGFCKLHISYSRH 323
Y ++ ++ S+H
Sbjct: 425 YGK---QIRVTASKH 436
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 212 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 271
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 272 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 307
>gi|449441199|ref|XP_004138370.1| PREDICTED: polypyrimidine tract-binding protein homolog 3-like
isoform 2 [Cucumis sativus]
Length = 408
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 155/311 (49%), Gaps = 54/311 (17%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAG 110
+NQA ++ D+ A+ + ++A+ +P+ +RG+ VY+Q+S+ QE+ N + D
Sbjct: 5 KNQALMQMQDVPSAVNALQFFANL-QPS-IRGRNVYVQFSSHQELTTADQNAQGRGDEPN 62
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
+LLVTI ++++VLH VF GFV KI TF+K+AGFQAL+Q+ + A SA+ A
Sbjct: 63 RILLVTIHHM-LYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTA 121
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSA------- 223
L GR+I G C L I +S +L V + + RSRD+TNP LP P
Sbjct: 122 LQGRNIYD-------GCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGY 174
Query: 224 --------IDASGQLSVGLD------------GKKLEP-------ESNVLLASIENMQYA 256
+ SG VG G L P VL++++ +
Sbjct: 175 GDTGGMYPLQPSGARPVGFSQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDR-- 232
Query: 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
+ D L +FS +G + +I + +N AL+Q D A +A L+G ++ +L
Sbjct: 233 IDEDKLFNLFSIYGNIVRIKLL-RNKPDHALVQMGDGFQAELAVHFLKGAMLFGK---RL 288
Query: 317 HISYSRHTDLS 327
+++S+H +++
Sbjct: 289 EVNFSKHPNIT 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G+ EP + +LL +I +M Y +T++VLH VF G V+KI F K+ G QALIQY Q
Sbjct: 56 GRGDEP-NRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQC 114
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
AV A+ AL+G IYDG C+L I +S +L + NN+RSRD+T PS P S+P G+
Sbjct: 115 AVSARTALQGRNIYDGC-CQLDIQFSNLDELQVNYNNERSRDFTNPSLP---SEPK--GR 168
Query: 356 QPVPMVGATANQY 368
P G T Y
Sbjct: 169 SSQPGYGDTGGMY 181
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +L E TEEE++ L + G +VN+K + QA I F QA
Sbjct: 323 YRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQAT 382
Query: 70 -AMISYYAS 77
A++ +AS
Sbjct: 383 EALVCKHAS 391
>gi|119579506|gb|EAW59102.1| ROD1 regulator of differentiation 1 (S. pombe), isoform CRA_c [Homo
sapiens]
Length = 482
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 111/215 (51%), Gaps = 25/215 (11%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 19 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 76
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
A+ M S A G + N T VL + IE V
Sbjct: 77 EAAVTMAVSAVQSGSLALSGGPS------------NEGTVLPGQSPVLRIIIENL-FYPV 123
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
+++VLH +FS FG V KI TF K FQAL+Q++D A AK ALDG++I
Sbjct: 124 TLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNAC----- 178
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 179 --CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTG 211
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 101 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 160
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 161 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 217
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 218 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 246
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 247 FPQATGLSVPAVPGALG 263
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 284 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 339
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 340 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 390
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 391 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 444
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 445 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 481
>gi|297275608|ref|XP_001092088.2| PREDICTED: polypyrimidine tract-binding protein 1 isoform 1 [Macaca
mulatta]
Length = 556
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 122/246 (49%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK + DG++I CTLR + + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSQDGQNIYNAC-------CTLRXXXXXXXXXXXXYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK + +G IY+ C L NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSQDGQNIYN-ACCTLRXXXXXXXXXXXXYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 291 TMAAAFGAPGIISASPYAGAGFPP 314
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 359 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 415
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 416 MSHLNGHKL--HGKP-------IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 466
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ + L ++FS+ G V K F + AL
Sbjct: 467 GSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 520
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 521 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 555
>gi|25146811|ref|NP_741041.1| Protein PTB-1, isoform a [Caenorhabditis elegans]
gi|20338920|emb|CAA85411.3| Protein PTB-1, isoform a [Caenorhabditis elegans]
Length = 615
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 30/237 (12%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P SKV+H+RN+P + + EL++L +G V N G ++QAF+E+ + A A +S
Sbjct: 118 PVSKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKG--KSQAFVEYEEEASAAAFVS- 174
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIV--NNKTTADVAG-----------------NVLLV 115
++ P Q+RG+T++ QYS +E+ NK +D N +L
Sbjct: 175 -GMTAVPIQIRGRTLFAQYSTHRELKFDKNKAISDTESVANGSVSNFEVGTQQQPNSVLR 233
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
TI VS+DVL+ +F+ +G V +I TF K FQALVQ S+ +A AK L+ ++
Sbjct: 234 TIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQN 293
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
+ G CTLRI YS + L+VK+ + +SRDYTNP LP ++ + +S+
Sbjct: 294 VYN-------GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSI 343
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 13/156 (8%)
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
TL YS H +L KF +++ ++ + A+G +S G + +P S VL
Sbjct: 187 TLFAQYSTHREL--KFDKNKA---------ISDTESVANGSVSNFEVGTQQQPNS-VLRT 234
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
IENM + V+LDVL+ +F+ +G V +I F+KN QAL+Q + +A +AK+ LE +
Sbjct: 235 IIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNV 294
Query: 309 YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
Y+G C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 295 YNGC-CTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP 329
>gi|301103606|ref|XP_002900889.1| polypyrimidine tract-binding protein, putative [Phytophthora
infestans T30-4]
gi|262101644|gb|EEY59696.1| polypyrimidine tract-binding protein, putative [Phytophthora
infestans T30-4]
Length = 655
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 129/300 (43%), Gaps = 72/300 (24%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R + P S+V+ + LP +C E EL+ L PF V K + + QAF++ D+ A
Sbjct: 18 RGSLPASRVVFVCGLPADCLESELLALCCPFAVV--EKSLMIPQKRQAFVQLPDVTSASN 75
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------------------- 104
++++Y + A +RGK ++ +YSNR EI
Sbjct: 76 LVTFYQTRD--ALIRGKKIFFEYSNRNEITVRPEHDGPPSYQPQPAPIAAPYQQLPSMQQ 133
Query: 105 ----------TADVAGNVLLVTIEGTDARL-----------------VSIDVLHLVFSAF 137
D G + L+ I+G + V++DVL VF F
Sbjct: 134 YPPQQEVPLYRGDNGGQLGLLPIDGPRRGIGPPNQILMVSVSKIEYDVTVDVLQQVFQKF 193
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197
G V KI TF K F++LVQ + A +A++ALDGR I G L I +S H
Sbjct: 194 GNVQKIVTFWKDNEFKSLVQMESVDQAQAAQSALDGRDI-------YTGCNQLSIVFSRH 246
Query: 198 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV 257
+L V++ RSRDYTNP LP P G D + EP + +L E QY++
Sbjct: 247 PELRVRYNDDRSRDYTNPNLPPGPG--------RGGDDRNEGEPATTILSDRREPPQYSI 298
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 6/124 (4%)
Query: 225 DASGQLSV-GLDG--KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
D GQL + +DG + + P + +L+ S+ ++Y VT+DVL VF FG VQKI F K+
Sbjct: 146 DNGGQLGLLPIDGPRRGIGPPNQILMVSVSKIEYDVTVDVLQQVFQKFGNVQKIVTFWKD 205
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTL 340
++L+Q V A A+ AL+G IY G C +L I +SRH +L ++ N+DRSRDYT
Sbjct: 206 NEFKSLVQMESVDQAQAAQSALDGRDIYTG--CNQLSIVFSRHPELRVRYNDDRSRDYTN 263
Query: 341 PSTP 344
P+ P
Sbjct: 264 PNLP 267
>gi|290993108|ref|XP_002679175.1| predicted protein [Naegleria gruberi]
gi|284092791|gb|EFC46431.1| predicted protein [Naegleria gruberi]
Length = 482
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 174/354 (49%), Gaps = 47/354 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H R +P + T+ +L+ + +PFG V N + Q ++FA+++ AI++I +
Sbjct: 19 PSKVIHFRRIPIDTTQNDLMNMCQPFGTVTNI---LLLKNGQGLVQFAEVDGAISLIESF 75
Query: 76 ASS--SEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGN--------VLLVTIEGTDA 122
++ S +R VY YS+ E+ +K+ +A N +LLVTI + +
Sbjct: 76 NNNPDSPSFVIRDTKVYPNYSSHTELSKGLISKSDNGLANNGKQQDPNHILLVTISKSKS 135
Query: 123 RLVSIDVLHLVFSAFG--FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
V+ID LH +FS G + KI F KTAG QAL+Q+ + A A+ L G + +
Sbjct: 136 TDVNIDSLHEIFSLKGSCSIEKIVMFNKTAGLQALIQYKNVNDALEARKKLQGET--PFS 193
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ----------- 229
EN L I +S DL+V S ++RDYT P P P + +S
Sbjct: 194 TSEN-----LLIQFSNLKDLTVHQNSDKARDYTKP--PQQPQSSVSSPTTTNTTNSTNTV 246
Query: 230 -LSVGLDGKKLEPES---NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
+S L P + +LL S N + D+L +FS +G + +I +F K
Sbjct: 247 AVSSTLPSTNNAPTTVMKRILLVSNFN-DKKMNCDLLFNLFSCYGYIHRIKIF-KTKPDH 304
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
AL+Q + A+ A +L+G I+ L +++S+HT ++ +++ +D+T
Sbjct: 305 ALVQMASHKQALNAISSLKGVQIFGKT---LSVNFSKHTFINTNKSDNNMKDFT 355
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 28/192 (14%)
Query: 153 QALVQFSDTETASSAKNALDGR-SIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRD 211
Q LVQF++ + A S + + P +++ + + YS+HT+LS S
Sbjct: 57 QGLVQFAEVDGAISLIESFNNNPDSPSFVIRD----TKVYPNYSSHTELSKGLISKSDNG 112
Query: 212 YTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 271
N +GK+ +P +L+ ++ V +D LH +FS G
Sbjct: 113 LAN--------------------NGKQQDPNHILLVTISKSKSTDVNIDSLHEIFSLKGS 152
Query: 272 --VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIK 329
++KI MF+K GLQALIQY +V A+ A++ L+G + L I +S DL++
Sbjct: 153 CSIEKIVMFNKTAGLQALIQYKNVNDALEARKKLQGETPFSTS-ENLLIQFSNLKDLTVH 211
Query: 330 VNNDRSRDYTLP 341
N+D++RDYT P
Sbjct: 212 QNSDKARDYTKP 223
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
V +LLV+ + + ++ D+L +FS +G++H+I F KT ALVQ + + A +A
Sbjct: 262 VMKRILLVS--NFNDKKMNCDLLFNLFSCYGYIHRIKIF-KTKPDHALVQMASHKQALNA 318
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
++L G I G TL + +S HT ++ + +D+T L P S
Sbjct: 319 ISSLKGVQI--------FGK-TLSVNFSKHTFINTNKSDNNMKDFTKTNLNRFPRGASTS 369
Query: 228 -------GQLSVGLDGKKL---EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
L+ G KL +P + ++++ + ++L +FS FG ++ + +
Sbjct: 370 QTSPSSNNSLTNGKQHNKLYMCQPTHTLHISNVPFEKDEKGKEILTNIFSQFGEIEGLRV 429
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
F N ALI++ + +A A L I
Sbjct: 430 FRHNDKPMALIKFKTITSAAEALATLHNETI 460
>gi|149034648|gb|EDL89385.1| polypyrimidine tract binding protein 1, isoform CRA_b [Rattus
norvegicus]
Length = 490
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 167/356 (46%), Gaps = 83/356 (23%)
Query: 38 GKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ 97
G PFGKV N G +NQAFIE + A M++YY S + P +RG+ +Y+Q+SN +
Sbjct: 38 GLPFGKVTNLLMLKG--KNQAFIEMSTEEAANTMVNYYTSVA-PV-LRGQPIYIQFSNHK 93
Query: 98 EI-----------------VNNKTTADV---------------AGN--VLLVTIEGTDAR 123
E+ VN+ + ++ AG VL + +E
Sbjct: 94 ELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENL-FY 152
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 153 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN----- 207
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE- 240
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 208 --ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHG 265
Query: 241 ---------------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
++VLL S N + VT L ++F +G VQ
Sbjct: 266 ALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQ 324
Query: 274 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
++ +F+K AL+Q D A +A L GH ++ + I+ S+H + +
Sbjct: 325 RVKILFNKKE--NALVQMADGSQAQLAMSHLNGHKLHGK---SVRITLSKHQSVQL 375
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 133 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 192
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 193 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 248
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 293 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 349
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 350 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 400
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 401 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 454
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 455 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 489
>gi|440793956|gb|ELR15127.1| protein kinase domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 515
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 118/207 (57%), Gaps = 26/207 (12%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPSKVLH RN+ E T+E+++EL PFG V K + ++NQA +EFAD+ AI+M ++
Sbjct: 162 PPSKVLHFRNVTSELTQEDIMELAAPFGTV--EKVVMLTSKNQALLEFADIAAAISMSNF 219
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSI--DVL 130
Y S+ +RG+ VY+++S Q++ TA AG +LLVT++ ++ I D++
Sbjct: 220 YLSTQ--PNIRGRKVYMRFSRHQQL-----TASAAGPNRILLVTLQTEQEPVIPITADIV 272
Query: 131 HLVFSAFGFVHKITTF-----------EKTAGFQALVQFSDTETASSAKNALDGRSIPRY 179
+FS++GF+ KI + + Q LVQFS +A +A L+G+++ Y
Sbjct: 273 WQIFSSYGFIEKIVVMNRQSQEYAEESRRDSRLQTLVQFSSPASAQTASQYLNGKTV--Y 330
Query: 180 LLPENMGPCTLRITYSAHTDLSVKFQS 206
+ + + TL I YS T L+VK S
Sbjct: 331 VGTDPIMSITLFIQYSHLTQLTVKHNS 357
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 243 SNVLLASIENMQYAV---TLDVLHMVFSAFGPVQKIAMFD-----------KNGGLQALI 288
+ +LL +++ Q V T D++ +FS++G ++KI + + ++ LQ L+
Sbjct: 250 NRILLVTLQTEQEPVIPITADIVWQIFSSYGFIEKIVVMNRQSQEYAEESRRDSRLQTLV 309
Query: 289 QYPDVQTAVVAKEALEGHCIYDGG----FCKLHISYSRHTDLSIKVNN 332
Q+ +A A + L G +Y G L I YS T L++K N+
Sbjct: 310 QFSSPASAQTASQYLNGKTVYVGTDPIMSITLFIQYSHLTQLTVKHNS 357
>gi|26331660|dbj|BAC29560.1| unnamed protein product [Mus musculus]
gi|148699700|gb|EDL31647.1| mCG13402, isoform CRA_d [Mus musculus]
Length = 489
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 166/355 (46%), Gaps = 82/355 (23%)
Query: 38 GKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ 97
G PFGKV N G +NQAFIE A M++YY S + P +RG+ +Y+Q+SN +
Sbjct: 38 GLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVA-PV-LRGQPIYIQFSNHK 93
Query: 98 EI-----------------VNNKTTADV---------------AGN--VLLVTIEGTDAR 123
E+ VN+ + ++ AG VL + +E
Sbjct: 94 ELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENL-FY 152
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 153 PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN----- 207
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE- 240
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 208 --ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHG 265
Query: 241 --------------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
++VLL S N + VT L ++F +G VQ+
Sbjct: 266 ALAPLAIPSAAAAAAASRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQR 324
Query: 275 IA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
+ +F+K AL+Q D A +A L GH ++ + I+ S+H + +
Sbjct: 325 VKILFNKKE--NALVQMADGSQAQLAMSHLNGHKLHGK---SVRITLSKHQSVQL 374
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 133 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 192
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 193 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 248
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 292 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGSQAQLA 348
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 349 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 399
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 400 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 453
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 454 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 488
>gi|115634663|ref|XP_001176080.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 1
[Strongylocentrotus purpuratus]
Length = 617
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 115/239 (48%), Gaps = 53/239 (22%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 109 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 166
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI------------------------------------ 99
+ P V G+ +Y Q+S +E+
Sbjct: 167 --THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQPHPMLQQHP 224
Query: 100 --VNNKTTADVAGNV---LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
+ D G V L V +E + +++D LH +F +G V +I TF K+ FQA
Sbjct: 225 QHATHPKVPDTGGGVNTILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQA 283
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
LVQFSD A+ AK LDG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 284 LVQFSDASQAAVAKLELDGKNIYNNC-------CQLRIDFSKLTNLSVKYNNEKSRDYT 335
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 240 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 299
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 300 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 335
>gi|168012956|ref|XP_001759167.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689480|gb|EDQ75851.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 162/345 (46%), Gaps = 80/345 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH+RN+ E E QA ++ D+ AI ++ YY
Sbjct: 4 PSKVLHIRNVGPEIAE-------------------------QALLQMQDIPSAINLMQYY 38
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--------------NVLLVTIEGTD 121
++ +P+ VRG+ VY+Q+S+ E+ TT D +G +LL+TI
Sbjct: 39 -TTVQPS-VRGRNVYMQFSSHPEL----TTPDQSGQTRRLPAEQELLPNRILLITIHNP- 91
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+++DVLH VFS GFV KI TF K+AG QAL+Q++ +A A++ L GR+I
Sbjct: 92 LYPITVDVLHQVFSPHGFVEKIVTFTKSAGLQALLQYASQSSAVQARSTLQGRNIYD--- 148
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ------------ 229
G CTL I YS +L V + + R+RD+TN LP S G
Sbjct: 149 ----GCCTLDIQYSNLQELQVNYNNERTRDFTNAALPSEQSRPGNPGNNIMVAMGGASAA 204
Query: 230 -------LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
L G+ G S +L++++ + + D L +FS +G + +I + N
Sbjct: 205 AAAFGGVLPPGITGTN--DRSTLLVSNL--VPEKIDADRLFNLFSNYGNIVRIKIL-HNK 259
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
ALIQ D A +A L+G ++ ++ +++S+H ++
Sbjct: 260 PDHALIQMGDGFQAELAFNYLKGVTLFGK---RMDVNFSKHAQIN 301
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 225 DASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL 284
D SGQ ++L P + +LL +I N Y +T+DVLH VFS G V+KI F K+ GL
Sbjct: 64 DQSGQTRRLPAEQELLP-NRILLITIHNPLYPITVDVLHQVFSPHGFVEKIVTFTKSAGL 122
Query: 285 QALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
QAL+QY +AV A+ L+G IYDG C L I YS +L + NN+R+RD+T + P
Sbjct: 123 QALLQYASQSSAVQARSTLQGRNIYDGC-CTLDIQYSNLQELQVNYNNERTRDFTNAALP 181
Query: 345 MVNSQP 350
S+P
Sbjct: 182 SEQSRP 187
>gi|294909465|ref|XP_002777772.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239885734|gb|EER09567.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 632
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 116/217 (53%), Gaps = 15/217 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVL++RN+P TE+++I FG+VVN + ++ FIEF D + AI +YY
Sbjct: 57 PSKVLYVRNVPESVTEQDIIAYCLTFGRVVNIL--LLRDKRHGFIEFEDESSAIKCYTYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT-TADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
++ P + G + +S R EI + ++ +LL TI V++DV+ V
Sbjct: 115 --NANPLLITGHRLEFAFSGRSEITARRDPDSNPPNRILLFTITNL-VYPVTVDVISQVM 171
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+ FG + K+ F + QALVQ +D +TA+ AK LDG++I G T+++ Y
Sbjct: 172 NKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNI-------YAGCNTIKVQY 224
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
S+ L VK + RS D+TNP L P ++A L+
Sbjct: 225 SSLPQLEVKHNNERSWDFTNPSL--LPGGMEAGSGLT 259
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 7/110 (6%)
Query: 238 KLEPESN----VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ +P+SN +LL +I N+ Y VT+DV+ V + FG ++K+ +F++ +QAL+Q DV
Sbjct: 139 RRDPDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADV 198
Query: 294 QTAVVAKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
TA VAKE L+G IY G C + + YS L +K NN+RS D+T PS
Sbjct: 199 DTANVAKEQLDGQNIYAG--CNTIKVQYSSLPQLEVKHNNERSWDFTNPS 246
>gi|47198889|emb|CAF88128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 217
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QALIQY D TA AK
Sbjct: 19 QSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADSMTAQHAKL 78
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+L+G IY+ C L IS+S+ T L++K NND+SRDYT P P ++QPSI
Sbjct: 79 SLDGQNIYN-ACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADAQPSI 128
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 7/96 (7%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D+ TA AK +LDG++I
Sbjct: 34 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQYADSMTAQHAKLSLDGQNIYNAC---- 89
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
CTLRI++S T L+VK+ + +SRDYT P LP A
Sbjct: 90 ---CTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTA 122
>gi|325187058|emb|CCA21600.1| polypyrimidine tractbinding protein putative [Albugo laibachii
Nc14]
Length = 614
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 128/266 (48%), Gaps = 61/266 (22%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R + P S+V+ + LP +C E EL+ L PF V K + ++QAF++ D++ A
Sbjct: 25 RSSNPESRVVFVHGLPQDCLESELLALCCPFAVV--EKSLLITQKSQAFVQLPDVSSATN 82
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIV-------------------NNKTT-----A 106
+I++Y + A +RG ++ +YSNR EI N TT A
Sbjct: 83 LINFYQTRD--AMIRGARIFFEYSNRSEITTRAGFQDDSSVEQHHTQRSNRPTTRQEQPA 140
Query: 107 DV----------AGN--------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHK 142
D +GN +L+VT+ + V++DVL VF FG V K
Sbjct: 141 DYDNVLRNQHSRSGNGASGRRGYAGAPNTILMVTVTKIEYD-VTVDVLQQVFQKFGNVQK 199
Query: 143 ITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV 202
+ TF K F+ALVQ + A +A+ ALDGR I G TL I +S H +L V
Sbjct: 200 VVTFWKNEEFKALVQMESIDQAQAAQQALDGRDI-------YTGCNTLGIVFSRHPELRV 252
Query: 203 KFQSHRSRDYTNPYLPVAPSAIDASG 228
+F + RS DY NP LP PSA D+SG
Sbjct: 253 RFNNDRSWDYMNPGLPPGPSA-DSSG 277
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 143/322 (44%), Gaps = 42/322 (13%)
Query: 79 SEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG 138
+EPA GK ++ N +++ +++ V+ V G + ++L L F
Sbjct: 2 TEPAT--GKRGSNEFENNRQMSKRARSSNPESRVVFV--HGLPQDCLESELLALC-CPFA 56
Query: 139 FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR-SIPR----YLLPENMGPCTLRIT 193
V K + + QA VQ D +A++ N R ++ R + N T R
Sbjct: 57 VVEKSLLITQKS--QAFVQLPDVSSATNLINFYQTRDAMIRGARIFFEYSNRSEITTRAG 114
Query: 194 YSAHTDLSVKFQSHRSR------------DYTNPYLPVAPSAIDASGQLSVGLDGKKLEP 241
+ D SV+ Q H R DY N V + SG + G G P
Sbjct: 115 F--QDDSSVE-QHHTQRSNRPTTRQEQPADYDN----VLRNQHSRSGNGASGRRGYAGAP 167
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+ +L+ ++ ++Y VT+DVL VF FG VQK+ F KN +AL+Q + A A++
Sbjct: 168 NT-ILMVTVTKIEYDVTVDVLQQVFQKFGNVQKVVTFWKNEEFKALVQMESIDQAQAAQQ 226
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYT---LPSTPMVNSQPSILGQQP 357
AL+G IY G C L I +SRH +L ++ NNDRS DY LP P +S + +
Sbjct: 227 ALDGRDIYTG--CNTLGIVFSRHPELRVRFNNDRSWDYMNPGLPPGPSADSSGPEMNYEE 284
Query: 358 VPMVGATAN----QYNGAQFAP 375
PM G + Q G+ + P
Sbjct: 285 GPMPGMLGDVPNAQGRGSTYGP 306
>gi|302821012|ref|XP_002992171.1| hypothetical protein SELMODRAFT_44533 [Selaginella moellendorffii]
gi|300140097|gb|EFJ06826.1| hypothetical protein SELMODRAFT_44533 [Selaginella moellendorffii]
Length = 414
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 165/332 (49%), Gaps = 44/332 (13%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
KVLHLRNL + E++L+EL +PFG+V + + NQAF++ D+ +A +I ++A
Sbjct: 1 KVLHLRNLAQDVAEDDLVELVRPFGRV--SGIVLLRTWNQAFVQMQDIAKAFLVIRHFA- 57
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTT--ADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
S A VRG+ V +Q+S R+E+ + + +LLVT+ + V++D LH F
Sbjct: 58 -SRQATVRGRDVSIQFSARKELYPAEVCQAQETCSAILLVTMLDSVCH-VTVDALHQTFK 115
Query: 136 AFGFVHKITTF-EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+FG + KI F + T QAL+Q++ A AK+ L I G CT+ I Y
Sbjct: 116 SFGPIEKIAIFPQSTVLAQALIQYASPRDAREAKHRLHKSKILN-------GSCTMEIQY 168
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVA--PSAIDASGQLSVGLDGKKLE------------ 240
S ++ V + SRD+TN LP A PS + A G + + G +
Sbjct: 169 SRTDEVRVACNNDLSRDFTNSSLPSARFPSILGA-GNVHLMKPGVRCRYRPGNSGLLPSG 227
Query: 241 PESN---VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ---ALIQYPDVQ 294
P +N VLL S N + + L+ +FS +G V +I K ++ AL+Q D
Sbjct: 228 PTTNQRCVLLLSNLNTRM-INEHKLYNLFSVYGNVLRI----KGSFVKPELALVQMSDGF 282
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
A +A L+G ++ K+ I+ S H+ L
Sbjct: 283 QADLAMACLKGVSLFGK---KMEITLSDHSCL 311
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVV 298
E S +LL ++ + VT+D LH F +FGP++KIA+F ++ L QALIQY + A
Sbjct: 88 ETCSAILLVTMLDSVCHVTVDALHQTFKSFGPIEKIAIFPQSTVLAQALIQYASPRDARE 147
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
AK L I +G C + I YSR ++ + NND SRD+T S P PSILG
Sbjct: 148 AKHRLHKSKILNGS-CTMEIQYSRTDEVRVACNNDLSRDFTNSSLPSARF-PSILG 201
>gi|148701925|gb|EDL33872.1| mCG9934 [Mus musculus]
Length = 559
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 46/241 (19%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T PS+V+H+ +LP TE E++ L PFGKV N +NQAF+E + A AM+
Sbjct: 24 THGPSRVIHIHSLPTSVTESEILCLALPFGKVSNLL--FLKAKNQAFMEMSTEESAKAMV 81
Query: 73 SYYASSSEPAQVRGKTVYLQ-YS-NRQEIVNNKTTADV-------------AGNV----- 112
+YY + P +RG+ V++Q Y+ + +E+ + T + V A NV
Sbjct: 82 NYYTWMT-PV-LRGQPVHIQVYTPHCKELRVSNTPSQVGAQLCLPADDPYQAWNVAPATP 139
Query: 113 -------LLVTIEGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
L+V +GT R+ V+++VLH +FS FG V KI T+ K FQAL+Q
Sbjct: 140 ASAVDTGLVVAGQGTVLRILVDNFFYRVTLEVLHQLFSRFGTVLKIITYTKNNRFQALLQ 199
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
++ + +A AK LDG++I CTLRI++S T+L VK+ + SRDYT P L
Sbjct: 200 YAHSMSAKCAKLCLDGQNIYD-------ACCTLRISFSGLTNLIVKYNNDESRDYTRPDL 252
Query: 218 P 218
P
Sbjct: 253 P 253
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+ VL ++N Y VTL+VLH +FS FG V KI + KN QAL+QY +A AK
Sbjct: 152 QGTVLRILVDNFFYRVTLEVLHQLFSRFGTVLKIITYTKNNRFQALLQYAHSMSAKCAKL 211
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
L+G IYD C L IS+S T+L +K NND SRDYT P P SQPS
Sbjct: 212 CLDGQNIYDAC-CTLRISFSGLTNLIVKYNNDESRDYTRPDLPSDESQPS 260
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
VT L ++F A+G VQ++ + N AL+Q D A +A + L GH +Y C L
Sbjct: 377 VTPQSLFILFGAYGDVQRVKILF-NRKENALVQMADGSQAELALKHLNGHKLYGKALCIL 435
Query: 317 HISYSRHTDLSI----KVNNDRSRDY 338
S+H + + K + D +++Y
Sbjct: 436 P---SKHQSVKLPREGKEDQDLTKEY 458
>gi|302791034|ref|XP_002977284.1| hypothetical protein SELMODRAFT_54589 [Selaginella moellendorffii]
gi|300155260|gb|EFJ21893.1| hypothetical protein SELMODRAFT_54589 [Selaginella moellendorffii]
Length = 414
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 56/338 (16%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
KVLHLRNL + E++L+EL +PFG+V + + NQAF++ D+ +A +I ++A
Sbjct: 1 KVLHLRNLAQDVAEDDLVELVRPFGRV--SGIVLLRTWNQAFVQMQDIAKAFLVIRHFA- 57
Query: 78 SSEPAQVRGKTVYLQYSNRQEI--VNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
S A VRG+ V +Q+S R+E+ + + +LLVT+ + V++D LH F
Sbjct: 58 -SRQATVRGRDVSIQFSARKELYPAEVRQAQETCSPILLVTMLDSVCH-VTVDALHQTFK 115
Query: 136 AFGFVHKITTF-EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+FG + KI F + T QAL+Q++ A AK+ L I G CT+ I Y
Sbjct: 116 SFGPIEKIAIFPQSTVLAQALIQYASPRDAREAKHRLHKSKILN-------GSCTMEIQY 168
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVA--PSAIDA------------------SGQLSVGL 234
S ++ V + SRD+TN LP A PS + A SG L G
Sbjct: 169 SRTDEVRVACNNDLSRDFTNSSLPSARFPSILGAGNAHLMKPGVRCRYRPGNSGLLPSG- 227
Query: 235 DGKKLEPESN---VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ---ALI 288
P +N VLL S N + + L+ +FS +G V +I K ++ AL+
Sbjct: 228 ------PTTNQRCVLLLSNLNTRM-INEHKLYNLFSVYGNVLRI----KGSFVKPELALV 276
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
Q D A +A L+G ++ K+ I+ S H+ L
Sbjct: 277 QMSDGFQADLAMACLKGVSLFGK---KMEITLSDHSCL 311
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVV 298
E S +LL ++ + VT+D LH F +FGP++KIA+F ++ L QALIQY + A
Sbjct: 88 ETCSPILLVTMLDSVCHVTVDALHQTFKSFGPIEKIAIFPQSTVLAQALIQYASPRDARE 147
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
AK L I +G C + I YSR ++ + NND SRD+T S P PSILG
Sbjct: 148 AKHRLHKSKILNGS-CTMEIQYSRTDEVRVACNNDLSRDFTNSSLPSARF-PSILG 201
>gi|428170649|gb|EKX39572.1| hypothetical protein GUITHDRAFT_114298 [Guillardia theta CCMP2712]
Length = 580
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 128/257 (49%), Gaps = 29/257 (11%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
YT PSKVLH+RNLP EC E +L L FG+V + + ++QAF+EF L + M
Sbjct: 4 YTTEPSKVLHIRNLPEECNEGDLKTLASRFGEV--RRVFHLSRKHQAFVEFVSLEDSARM 61
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEI------------VNNKTTADVAGN----VLLV 115
++ S P +V + + QYSN+ E+ V ++ V N +LLV
Sbjct: 62 LA--ECESVPIRVGTRVIVAQYSNKTELSPPTREYEGEGFVRERSWNAVPPNSDARILLV 119
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
T+ + V +DV++ VFS G + KI F K QALVQF A +A + +G +
Sbjct: 120 TVTNVVYK-VDVDVMYQVFSMMGTIEKIVIFNKQGKTQALVQFERPADAQAALDRFNGLN 178
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA-PSAIDASGQLSVGL 234
I G L+I +S D++VK+ + RS D+TNP LP P+ A +
Sbjct: 179 IYN-------GCNNLQIGFSNLLDITVKYNNERSYDFTNPNLPAGNPNESPADRYDMRPI 231
Query: 235 DGKKLEPESNVLLASIE 251
DG+ +SN A+I+
Sbjct: 232 DGRPPASQSNWSAAAID 248
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 139/327 (42%), Gaps = 60/327 (18%)
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L + S FG V ++ F + QA V+F E SA+ + S+P +G
Sbjct: 26 LKTLASRFGEVRRV--FHLSRKHQAFVEFVSLE--DSARMLAECESVP-----IRVGTRV 76
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNP--YLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
+ YS T+LS + + + + V P++ ++ +LL
Sbjct: 77 IVAQYSNKTELSPPTREYEGEGFVRERSWNAVPPNS------------------DARILL 118
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
++ N+ Y V +DV++ VFS G ++KI +F+K G QAL+Q+ A A + G
Sbjct: 119 VTVTNVVYKVDVDVMYQVFSMMGTIEKIVIFNKQGKTQALVQFERPADAQAALDRFNGLN 178
Query: 308 IYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATAN 366
IY+G C L I +S D+++K NN+RS D+T P+ P N S A+
Sbjct: 179 IYNG--CNNLQIGFSNLLDITVKYNNERSYDFTNPNLPAGNPNES------------PAD 224
Query: 367 QYNGAQFAPPPPEQPMMHQPTAAGWGAVP-PASQSMPMM--GNHPY----MPPGSMPMGP 419
+Y+ PP + + W A S+ + M G P+ M PG M P
Sbjct: 225 RYDMRPIDGRPPA-------SQSNWSAAAIDVSRGIDRMRLGGEPFLDMRMDPGGR-MDP 276
Query: 420 GMM-QMHMPGQSGMQHHHGAMPPPRPD 445
GM+ + GM G P PD
Sbjct: 277 GMLADPRLDPAFGMDPQRGIDPLRIPD 303
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
++ + D V+ID L +FS G + KI AL+QF + A +A+ L+
Sbjct: 377 VILVNNLDPDRVTIDALFNLFSTCGIIQKIKILYNKRD-SALIQFESPDHAENARITLN- 434
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
S P L N L I+ S H + Q++RS D + ++ Q G
Sbjct: 435 -SCP--LWGRN-----LVISTSKHDTV----QANRS-DIEEEGAKLFGDYSTSNIQRYRG 481
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ------AL 287
+ + + L I N+ VT D L +F+ +GPV K+ Q AL
Sbjct: 482 ANARSIPSIEPSKLLHISNIPLHVTEDDLKGLFADYGPVAKLKFISGRSETQTVDRKMAL 541
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321
++ P +Q A A G + DG +L IS+S
Sbjct: 542 VELPSIQDAAEALCYTHG-TVLDG--MRLRISFS 572
>gi|357497749|ref|XP_003619163.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
gi|355494178|gb|AES75381.1| Polypyrimidine tract-binding protein-like protein [Medicago
truncatula]
Length = 318
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 102/167 (61%), Gaps = 13/167 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVAGN 111
+NQA ++ D+ A + I +Y +S +P+ +RG+ VY+Q+S+ +E+ N+ D
Sbjct: 5 KNQALVQMQDVASADSAIQFYINS-QPS-IRGRNVYVQFSSHRELTTMDQNQGREDEPNR 62
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+LLVT+ +++DVL VFS GFV KI TF+K+AGFQAL+Q+ ++A +A+ AL
Sbjct: 63 ILLVTVHQV-LYPMTVDVLQQVFSPHGFVEKIVTFQKSAGFQALIQYETRQSAVTARGAL 121
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
GR++ G C L I +S +L V + + RSRD+TNP LP
Sbjct: 122 QGRNVYD-------GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 161
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G++ EP + +LL ++ + Y +T+DVL VFS G V+KI F K+ G QALIQY Q+
Sbjct: 55 GREDEP-NRILLVTVHQVLYPMTVDVLQQVFSPHGFVEKIVTFQKSAGFQALIQYETRQS 113
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
AV A+ AL+G +YD G C+L I +S +L + NNDRSRD+T P+ P
Sbjct: 114 AVTARGALQGRNVYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP 161
>gi|302789994|ref|XP_002976765.1| hypothetical protein SELMODRAFT_443293 [Selaginella moellendorffii]
gi|300155803|gb|EFJ22434.1| hypothetical protein SELMODRAFT_443293 [Selaginella moellendorffii]
Length = 451
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 165/359 (45%), Gaps = 63/359 (17%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
+ PSKVL R E T+EEL +L KPFG + K V + A +E D+ +A ++I
Sbjct: 46 SSAPSKVLFFRTQADEITQEELTDLVKPFGSI--NKFIVMRSGRDALLEMGDVEEARSVI 103
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ S + A +RGK V ++YS+RQ++ ++ VLL I ++ ++D+LH
Sbjct: 104 KHF--SEDQALLRGKEVQVEYSSRQKLSESENPKVETSRVLLAIIHNPLYQM-NVDILHQ 160
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS G + KI F K A QA + F E A++AK+AL GR I G C L I
Sbjct: 161 VFSPHGNIEKIVIFHK-AAVQAFIVFESDEAAAAAKSALQGRQIFD-------GCCKLDI 212
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLP------VAPSA----------------IDASGQL 230
+S DYTN LP +P A + SG L
Sbjct: 213 KFSM--------------DYTNNSLPGDSQSKTSPQASILGAGTAFSTMKQGSVPLSGVL 258
Query: 231 SVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
G+ G + LL S N+ + L +FS +G V +I MF+ QAL+Q
Sbjct: 259 PFGVTGSN---DKCTLLVS--NLHERTDEEKLFNLFSGYGRVLRIKMFE--NAKQALVQL 311
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
D A +A L+G + + IS+S+H + + R+RD+T+ NS+
Sbjct: 312 ADGIQAELALNFLKGAPLLGSA---MEISFSKHN----TIRHPRTRDFTMDPYNRFNSE 363
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
S VLLA I N Y + +D+LH VFS G ++KI +F K +QA I + + A AK A
Sbjct: 139 SRVLLAIIHNPLYQMNVDILHQVFSPHGNIEKIVIFHK-AAVQAFIVFESDEAAAAAKSA 197
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG-------- 354
L+G I+DG CKL I +S NN D ++P Q SILG
Sbjct: 198 LQGRQIFDGC-CKLDIKFSMDY-----TNNSLPGDSQSKTSP----QASILGAGTAFSTM 247
Query: 355 -QQPVPMVG 362
Q VP+ G
Sbjct: 248 KQGSVPLSG 256
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-AMIS 73
PPSK+LH+ N+ E E +L+ P G + K NR QA +EF + QA A+ S
Sbjct: 370 PPSKILHISNVSDEVEEGDLLNFLAPHGVIQRVKLFESTNRRQALVEFDTIEQATEALAS 429
Query: 74 YYASSSEPAQVR 85
+ S + +R
Sbjct: 430 KHRSKLKATSLR 441
>gi|293335109|ref|NP_001169809.1| uncharacterized protein LOC100383701 [Zea mays]
gi|224031787|gb|ACN34969.1| unknown [Zea mays]
Length = 397
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 153/304 (50%), Gaps = 58/304 (19%)
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVT 116
D++ +++ + YY +S +P+ +RG+ VY+Q+S+ QE+ ++++ + +LLVT
Sbjct: 3 DIHASVSALQYY-TSVQPS-IRGRNVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVT 60
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
I ++++VLH VF A+GFV KI TF+K+AGFQAL+QF + A A +L GR+I
Sbjct: 61 IHHM-IYPITVEVLHQVFKAYGFVEKIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNI 119
Query: 177 PRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV----------------- 219
G C L I YS ++L V + + RSRD+TNP LP
Sbjct: 120 YD-------GCCQLDIQYSNLSELQVHYNNDRSRDFTNPSLPTEQRPRASQQAYPDPANL 172
Query: 220 ----------------APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263
A A G L G+ G ++++++ N + + D L
Sbjct: 173 YAFQQAGASYAQMGRAAMIAAAFGGTLPHGVTGTN--ERCTLIVSNLNNDK--IDEDKLF 228
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+FS +G + +I + +N AL++ D A +A L+G ++ KL ++YS++
Sbjct: 229 NLFSLYGNIVRIKVL-RNKPDHALVEMADGLQAELAVHYLKGAILFGK---KLEVNYSKY 284
Query: 324 TDLS 327
+++
Sbjct: 285 PNIT 288
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Query: 214 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
N Y+ + + Q S G + + + +LL +I +M Y +T++VLH VF A+G V+
Sbjct: 25 NVYMQFSSHQELTTDQSSHGRNSDQESEPNRILLVTIHHMIYPITVEVLHQVFKAYGFVE 84
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
KI F K+ G QALIQ+ Q AV A +L G IYDG C+L I YS ++L + NND
Sbjct: 85 KIVTFQKSAGFQALIQFHSRQEAVEAFGSLHGRNIYDGC-CQLDIQYSNLSELQVHYNND 143
Query: 334 RSRDYTLPSTP 344
RSRD+T PS P
Sbjct: 144 RSRDFTNPSLP 154
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E +EE ++ G VVNTK + QA + F A
Sbjct: 312 YRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAAT 371
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 372 EALVSKHASTLE-----GNTIRISFSQMQSI 397
>gi|85003003|gb|ABC68595.1| polypyrimidine tract binding protein [Paracentrotus lividus]
Length = 618
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 115/243 (47%), Gaps = 57/243 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 107 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 164
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNN--------------------------------- 102
+ P V G+ +Y Q+S +E+ +
Sbjct: 165 --THMPRNVHGRQIYCQFSKHKELKTDFAHTQQQIASQVALQAAQQHPMLQQHLMQQPQH 222
Query: 103 ---------KTTADVAGNV---LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTA 150
D G V L V +E + +++D LH +F +G V +I TF K+
Sbjct: 223 HHHQQHAAHPKVPDTGGGVNTILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSG 281
Query: 151 GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSR 210
FQALVQF+D A+ AK LDG++I C LRI +S T+LSVK+ + +SR
Sbjct: 282 QFQALVQFADASQAAVAKLELDGKNIYNNC-------CQLRIDFSKLTNLSVKYNNEKSR 334
Query: 211 DYT 213
DYT
Sbjct: 335 DYT 337
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 242 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFADASQAAVAKLE 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 302 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 337
>gi|294955170|ref|XP_002788430.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239903853|gb|EER20226.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 366
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVL++RN+P TE+++I FG+VVN + ++ FIEF D + AI +YY
Sbjct: 12 PSKVLYVRNVPESVTEQDIIAYCLTFGRVVNIL--LLRDKRHGFIEFEDESSAIKCYTYY 69
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT-TADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
++ P + G + +S R EI + ++ +LL TI V++DV+ V
Sbjct: 70 --NANPLLITGHRLEFAFSGRSEITARRDPDSNPPNRILLFTITNL-VYPVTVDVISQVM 126
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+ FG + K+ F + QALVQ +D +TA+ AK LDG++I G T+++ Y
Sbjct: 127 NKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNI-------YAGCNTIKVQY 179
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
S+ L VK + RS D+TNP L P +D L+
Sbjct: 180 SSLPQLEVKHNNERSWDFTNPSL--LPGGMDGGSGLT 214
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 238 KLEPESN----VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ +P+SN +LL +I N+ Y VT+DV+ V + FG ++K+ +F++ +QAL+Q DV
Sbjct: 94 RRDPDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADV 153
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
TA VAKE L+G IY G + + YS L +K NN+RS D+T PS
Sbjct: 154 DTANVAKEQLDGQNIY-AGCNTIKVQYSSLPQLEVKHNNERSWDFTNPS 201
>gi|55733800|gb|AAV59307.1| putative polypyrimidine track-binding protein [Oryza sativa
Japonica Group]
Length = 389
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 167/340 (49%), Gaps = 52/340 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E E +L++L +PFG V A ++ DL+ +++ + YY
Sbjct: 4 PSKVIHIRNVGHEIAEADLLQLLQPFGNVSKI----------ALLQMQDLHNSVSALQYY 53
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN-------VLLVTIEGTDARLVSID 128
S+ +P+ VRG+ VY+Q+S+ QE+ ++ + + +LLVTI ++++
Sbjct: 54 -STVQPS-VRGRNVYMQFSSHQELTTDQNSHGRNSDQESEPNRILLVTIHHM-MYPITVE 110
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF A+G+V KI TF+K+AGFQAL+Q+ + A A AL G P ++
Sbjct: 111 VLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDAFGALHGFHKP--IIAYRTASK 168
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
L +Y+ Q R+ T + G L G+ G E L+
Sbjct: 169 GLSASYA---------QMGRAAMITAAF----------GGTLPPGVTGTN---ERCTLIV 206
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
S N + D L +FS +G + +I + +N AL++ D A +A L+G +
Sbjct: 207 SNLNTD-KINEDKLFNLFSLYGNIVRIKIL-RNKPDHALVEMADGFQAELAVHYLKGAVL 264
Query: 309 YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS 348
+ KL ++YS++ +++ + + DYT S NS
Sbjct: 265 FAK---KLEVNYSKYPNIT---SAPDAHDYTTSSLNRFNS 298
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E TE+ ++ G VVNTK + QA I+F +A
Sbjct: 304 YRHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEAT 363
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +A+S E G T+ + +S Q I
Sbjct: 364 EALVSKHATSLE-----GNTIRISFSQMQSI 389
>gi|395824362|ref|XP_003785435.1| PREDICTED: polypyrimidine tract-binding protein 3 [Otolemur
garnettii]
Length = 534
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 56/254 (22%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N
Sbjct: 31 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTN------------ 78
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI------------------- 99
+ +Q + P Q+R + VY+QYSN +E+
Sbjct: 79 LLMLKGKSQXXXXXXXXXTPVTP-QLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 137
Query: 100 -------------VNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF 146
N T VL + IE V+++VLH +FS FG V KI TF
Sbjct: 138 AVQSGGLPLPGASSNEGTVLPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITF 196
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 197 TKNNQFQALLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNN 249
Query: 207 HRSRDYTNPYLPVA 220
+SRD+T LP
Sbjct: 250 DKSRDFTRLDLPTG 263
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 153 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 212
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 213 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 269
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 270 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPTIG 298
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 299 FPQATGLSVPAVPGALG 315
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 23/222 (10%)
Query: 105 TADVAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTE 162
T + GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D
Sbjct: 333 TGGIPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADAN 388
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
A A N L G+ + +L R T S H + + + + T +
Sbjct: 389 QAQLAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLH 439
Query: 223 AIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 440 RFKKPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKSLFIDAGCSVKAFKFFQKD 493
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 494 RKMALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 533
>gi|296489304|tpg|DAA31417.1| TPA: polypyrimidine tract binding protein 2-like [Bos taurus]
Length = 496
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 166/359 (46%), Gaps = 65/359 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 84 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 141
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 142 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 201
Query: 166 SAKNALDGRSIPRYLL---------------PENMGPCTLRITYS-AHTDLSVKFQSHRS 209
AK L+ ++ ++L+ + R+ Y+ T + +++ S
Sbjct: 202 QAK--LEKKNDHQWLMAAAEATPKADFTLRRERFISSSWFRVLYTFRETSPVMNYRNDPS 259
Query: 210 RDYTNPYLP--VAPSAI-------DASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLD 260
+ +P ++P AI A+ VG+ G + +L++++ + VT
Sbjct: 260 KYSLEKTVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQ 317
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
L +F +G VQ++ + N ALIQ D + +A L G +Y G ++ +S
Sbjct: 318 SLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 374
>gi|33772111|gb|AAQ54492.1| polypyrimidine tract-binding protein [Malus x domestica]
Length = 53
Score = 110 bits (276), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/53 (90%), Positives = 50/53 (94%)
Query: 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
PQFRYTQ PSKVLHLRNLPWEC EEELIEL KPFGK+VNTKCNVGANRNQAF+
Sbjct: 1 PQFRYTQTPSKVLHLRNLPWECAEEELIELCKPFGKIVNTKCNVGANRNQAFV 53
>gi|338720441|ref|XP_003364168.1| PREDICTED: regulator of differentiation 1 isoform 2 [Equus
caballus]
Length = 457
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 113/246 (45%), Gaps = 46/246 (18%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGL------DGKKLEPESNV 245
I YS H +L +++R + A A+ A S+ L +G L +S V
Sbjct: 33 IQYSNHRELKTDNLPNQAR------VQAALQAVSAVQSGSLALPGAPTNEGTVLPGQSPV 86
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 87 LRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDG 146
Query: 306 HCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATA 365
IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 147 QNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL------------- 192
Query: 366 NQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMH 425
E PM AA +GA P S P G + P P G G+
Sbjct: 193 -------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIGFPQGTGLSVQT 232
Query: 426 MPGQSG 431
+PG G
Sbjct: 233 VPGALG 238
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 157/373 (42%), Gaps = 98/373 (26%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ M++YY + +R + V++QYSN +E+ +
Sbjct: 2 AFLEMASEEAAVTMVNYYTPVTP--HLRSQPVFIQYSNHRELKTDNLPNQARVQAALQAV 59
Query: 105 TADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+A +G++ L T EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 60 SAVQSGSLALPGAPTNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 119
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 120 TKNNQFQALLQYADPLNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNN 172
Query: 207 HRSRDYTNPYLPV----------------APSAID------------------------- 225
+SRD+T LP AP I
Sbjct: 173 DKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQGTGLSVQT 232
Query: 226 ---ASGQLSV---------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
A G L+V + G P ++VLL + N VT L ++F +G V
Sbjct: 233 VPGALGPLAVTSSAVTGRMAIPGASGIPGNSVLLVTNLNPDL-VTPHGLFILFGVYGDVH 291
Query: 274 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 332
++ MF+K AL+Q D A +A L G +Y G + +S + L +
Sbjct: 292 RVKIMFNKKE--NALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQE 348
Query: 333 DRSRDYTLPSTPM 345
D+ ++P+
Sbjct: 349 DQGLTKDFSNSPL 361
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D LV+ L ++F +G VH++ F K ALVQ +D A
Sbjct: 259 IPGNSVLLVTNLNPD--LVTPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 314
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 315 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 365
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 366 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKM 419
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 420 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 456
>gi|348686489|gb|EGZ26304.1| hypothetical protein PHYSODRAFT_350288 [Phytophthora sojae]
Length = 649
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 118/264 (44%), Gaps = 65/264 (24%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R +QP S+V+ + LP +C E EL+ L PF V K + + QAF++ D+ A+
Sbjct: 18 RSSQPASRVVFVCGLPADCLESELLALCCPFAVV--EKSLMIPQKRQAFVQLPDVTSAVN 75
Query: 71 MISYYASSSEPAQVRGKTVY-------------------------------------LQY 93
++++Y + A +RGK ++ +QY
Sbjct: 76 LVTFYQTRD--ALIRGKKIFFEFSNRNEITVRSDNDASSYQQQPPPQRATAYQQPPPMQY 133
Query: 94 SNRQEI----------------VNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAF 137
+ RQ++ + +L+V++ + V++DVL VF F
Sbjct: 134 APRQDMPPFRADGGAQPGLLPQEGGRRGVGPPNQILMVSVSKIEYD-VTVDVLQQVFQKF 192
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197
G V KI TF K F+ALVQ + A +A++ALDGR I G L I +S H
Sbjct: 193 GNVEKIVTFWKDNEFKALVQMESVDQAQAAQSALDGRDI-------YTGCNQLSIVFSRH 245
Query: 198 TDLSVKFQSHRSRDYTNPYLPVAP 221
+L V++ RSRDYTNP LP P
Sbjct: 246 PELRVRYNDDRSRDYTNPNLPPGP 269
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P + +L+ S+ ++Y VT+DVL VF FG V+KI F K+ +AL+Q V A A+
Sbjct: 164 PPNQILMVSVSKIEYDVTVDVLQQVFQKFGNVEKIVTFWKDNEFKALVQMESVDQAQAAQ 223
Query: 301 EALEGHCIYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
AL+G IY G C +L I +SRH +L ++ N+DRSRDYT P+ P
Sbjct: 224 SALDGRDIYTG--CNQLSIVFSRHPELRVRYNDDRSRDYTNPNLP 266
>gi|55669744|pdb|1SJR|A Chain A, Nmr Structure Of Rrm2 From Human Polypyrimidine Tract
Binding Protein Isoform 1 (Ptb1)
Length = 164
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 37 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 96
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 97 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 152
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 58 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN------ 111
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 234
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 112 -ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 162
>gi|158519869|ref|NP_001103551.1| polypyrimidine tract-binding protein 2 [Bos taurus]
gi|158455056|gb|AAI22581.1| PTBP2 protein [Bos taurus]
Length = 255
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAK 168
AK
Sbjct: 233 QAK 235
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 34/51 (66%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD 227
>gi|159163719|pdb|2ADB|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd2 Complexed With Cucucu Rna
Length = 148
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 24 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 83
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 84 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 139
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 45 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN------ 98
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 99 -ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 135
>gi|194740822|ref|XP_001952889.1| GF17502 [Drosophila ananassae]
gi|190625948|gb|EDV41472.1| GF17502 [Drosophila ananassae]
Length = 835
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 61/262 (23%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANR--------------------- 55
SKV+HLRN+P E E ++I LG PFG+V N G N+
Sbjct: 265 SKVVHLRNIPNESGESDVIALGIPFGRVTNVLVLKGKNQAFIEMADEISATSMVSCYTVN 324
Query: 56 ------NQAFIEFADL---------NQAIAMISYY-----------------ASSSEPAQ 83
+++F++ N ++ Y AS+S +
Sbjct: 325 PPQMRGRMVYVQFSNHRELKTDQSHNNSVVQSDYRIQSPAGGSPLPLCAATNASNSANSS 384
Query: 84 VRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKI 143
G N NN +A VL V +E VS+D+LH +F +G V KI
Sbjct: 385 GDGNGTVAILQNNTSAGNNSNSAGGPNTVLRVIVESL-MYPVSLDILHQIFQRYGKVLKI 443
Query: 144 TTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK 203
TF K FQAL+Q+ D +A AK+ LDG++I G CTLRI S T L+VK
Sbjct: 444 VTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN-------GCCTLRIDNSKLTALNVK 496
Query: 204 FQSHRSRDYTNPYLPVAPSAID 225
+ + +SRD+TNP LP +D
Sbjct: 497 YNNDKSRDFTNPALPPGEPGVD 518
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 413 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 472
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGAT 364
G IY+ G C L I S+ T L++K NND+SRD+T P+ P P G +P G
Sbjct: 473 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP-----PGEPGVDLMPTAGGL 526
Query: 365 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSM--PMMGNH 407
N + A P ++P + G +PP + + P+ G +
Sbjct: 527 MNTNDLLLIA--PRQRPSLTVNGLGAPGVLPPFALGLGTPLTGGY 569
>gi|344251032|gb|EGW07136.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 323
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 169 GMAMAGQSPVLRILVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVS 228
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY +C L I +S+ T L +K NND+SRDYT P P +SQPS+
Sbjct: 229 AQHAKLSLDGQNIYK-AWCSLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSL 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I +
Sbjct: 190 VTLDVLHQIFSKFGTVLKIITFTKNNRFQALLQYADPVSAQHAKLSLDGQNIYK------ 243
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 234
C+LRI +S T L VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 244 -AWCSLRIDFSKLTSLYVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 294
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R+LP + TE+E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSTGVPSRVIHVRSLPSDVTEDEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYY 75
M++YY
Sbjct: 109 MVNYY 113
>gi|344255742|gb|EGW11846.1| Polypyrimidine tract-binding protein 2 [Cricetulus griseus]
Length = 212
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 26 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 83
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 84 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 141
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 142 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 201
Query: 166 SAK 168
AK
Sbjct: 202 QAK 204
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 34/51 (66%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D
Sbjct: 146 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD 196
>gi|74193172|dbj|BAE20599.1| unnamed protein product [Mus musculus]
gi|74193487|dbj|BAE20681.1| unnamed protein product [Mus musculus]
gi|74193495|dbj|BAE20685.1| unnamed protein product [Mus musculus]
Length = 241
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAK 168
AK
Sbjct: 233 QAK 235
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD 227
>gi|149025820|gb|EDL82063.1| polypyrimidine tract binding protein 2, isoform CRA_c [Rattus
norvegicus]
Length = 243
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAK 168
AK
Sbjct: 233 QAK 235
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 292
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGD 227
>gi|345777899|ref|XP_538790.3| PREDICTED: regulator of differentiation 1 [Canis lupus familiaris]
Length = 610
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 119/240 (49%), Gaps = 31/240 (12%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 110 ANGNDNKKFKGDRPPCSPSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 167
Query: 59 FIEFAD--------LNQAIAMIS------YYASSSEPAQVRGKTVYLQYSNRQEI----V 100
F++ L+ A + + Y S AQ + V S +
Sbjct: 168 FLKMNKELCPHGPALHSAWTVFTILVHTMYTLSGLSRAQAALQAVSAVQSGSLALPGAPT 227
Query: 101 NNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD 160
N T VL + IE V+++VLH +FS FG V KI TF K FQAL+Q++D
Sbjct: 228 NEGTILPGQSPVLRIIIENL-FYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYAD 286
Query: 161 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 287 PVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTG 339
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 93/170 (54%), Gaps = 16/170 (9%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 229 EGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 288
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 289 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 345
Query: 355 QQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWGAVPPA 397
+P PM G ++ Y GA FAP HQ T AVP A
Sbjct: 346 -EP-PMAAAFGAPGIISSPYAGAAGFAPAIG----FHQATGISVPAVPGA 389
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D L++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 416 SVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQLAMN 471
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 472 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 522
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 523 KNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 576
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 577 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 609
>gi|449267533|gb|EMC78469.1| Regulator of differentiation 1, partial [Columba livia]
Length = 499
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 165/384 (42%), Gaps = 93/384 (24%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR++P + TEE ++ L PFGKV N G + QAF E A+ +++YY
Sbjct: 13 PSRVLHLRHIPSDATEE-VLSLALPFGKVTNILMLKG--KRQAFSEVGTEEPAVNVMNYY 69
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT--------------- 120
AS++ + + +++QYSN +E+ + + ++ T
Sbjct: 70 ASAA--PLLHSQPLFIQYSNPRELRTDYLPDQARAEAMFHPVDTTLFESQPVASASEARD 127
Query: 121 ----DARLV------------SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETA 164
D R V S+++LH + S FG V +I F K FQAL ++ + +A
Sbjct: 128 DPFPDVRCVLRIIVDNVSHHISLEMLHEILSPFGPVLRIIIFTKYGKFQALAEYDNPRSA 187
Query: 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP------ 218
AK L+G+ I C +R+ YS T L++K+ + +SRD+T LP
Sbjct: 188 YCAKKTLNGQGI-------FTSDCFIRVDYSKFTSLAIKYNNEKSRDFTRLDLPSGDGQI 240
Query: 219 ---------------VAPSAIDASG---QLSVGLDGKKLEP------------------- 241
+ PS A+G +S L P
Sbjct: 241 YMDQPIAAAYGIQNNIVPSYTGAAGFTPNMSFSQGAGSLVPPLPTAVRSLAPPGQRTYPD 300
Query: 242 --ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
E++VLL S N AVT L ++F +G V ++ + + +AL+Q D A +A
Sbjct: 301 FSENSVLLVSNLNPN-AVTPYGLFILFGIYGNVHRVKIMFRTKE-KALVQMADANQARLA 358
Query: 300 KEALEGHCIYDGGFCKLHISYSRH 323
L G +Y LH ++S+H
Sbjct: 359 ISYLNGQKLYGR---VLHATFSKH 379
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL ++N+ + ++L++LH + S FGPV +I +F K G QAL +Y + ++A AK+ L
Sbjct: 136 VLRIIVDNVSHHISLEMLHEILSPFGPVLRIIIFTKYGKFQALAEYDNPRSAYCAKKTLN 195
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGAT 364
G I+ C + + YS+ T L+IK NN++SRD+T P + Q I QP+
Sbjct: 196 GQGIFTSD-CFIRVDYSKFTSLAIKYNNEKSRDFTRLDLPSGDGQ--IYMDQPIAAAYGI 252
Query: 365 ANQ----YNGA 371
N Y GA
Sbjct: 253 QNNIVPSYTGA 263
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 27/226 (11%)
Query: 103 KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
+T D + N +L+ + + V+ L ++F +G VH++ +T +ALVQ +D
Sbjct: 296 RTYPDFSENSVLL-VSNLNPNAVTPYGLFILFGIYGNVHRVKIMFRTKE-KALVQMADAN 353
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV----KFQSHRSRDYTNPYLP 218
A A + L+G + + L T+S H + + + ++DY+N P
Sbjct: 354 QARLAISYLNG---------QKLYGRVLHATFSKHHTVQLLRGGRDDQGLTKDYSNS--P 402
Query: 219 VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
+ I S + + P S L + N+ VT+D + +F++ G K F
Sbjct: 403 LHRFKIPGSKNF------QNIFPPSATL--HLSNIPSCVTVDDMKNLFASTGCTVKACRF 454
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
+N ALIQ V+ AV A L H + G L +S+++HT
Sbjct: 455 FRNNCRTALIQLGSVEEAVHALIELHNHDL--GQNRTLRVSFAKHT 498
>gi|355558193|gb|EHH14973.1| hypothetical protein EGK_00996, partial [Macaca mulatta]
Length = 529
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 174 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 233
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 234 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 283
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 48/234 (20%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q+ D A AK ALDG++I
Sbjct: 189 VTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN------ 242
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS----------- 227
CTLRI +S +L+VK+ + +SRDYT P LP AI A+
Sbjct: 243 -ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVP 301
Query: 228 GQLS------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269
G LS VG+ G + +L++++ + VT L +F +
Sbjct: 302 GALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVY 359
Query: 270 GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
G VQ++ + N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 360 GDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 409
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANR 55
PS+VLH+R LP E TE E+I LG PFGKV N G N+
Sbjct: 54 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 93
>gi|302782656|ref|XP_002973101.1| hypothetical protein SELMODRAFT_99329 [Selaginella moellendorffii]
gi|300158854|gb|EFJ25475.1| hypothetical protein SELMODRAFT_99329 [Selaginella moellendorffii]
Length = 410
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 165/350 (47%), Gaps = 59/350 (16%)
Query: 31 EEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90
+EEL +L KPFG + K V + A +E D+ +A ++I ++ S + A +RGK V
Sbjct: 1 QEELTDLVKPFGSI--NKFIVMRSGKDALLEMGDVEEARSVIKHF--SEDQALLRGKEVQ 56
Query: 91 LQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTA 150
++YS+RQ++ + A VLL I ++ ++D+LH VFS G + KI F K A
Sbjct: 57 VEYSSRQKLSEPENPKVEASRVLLAIIHNPLYQM-NVDILHQVFSPHGNIEKIVIFHKAA 115
Query: 151 GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH--- 207
QA + F E A++AK+AL GR I G C L I +S + +F +
Sbjct: 116 AVQAFIVFDSDEAAAAAKSALQGRQIFD-------GCCKLDIKFSI---FAFRFLGNYKE 165
Query: 208 ---RSRDYTNPYLP------VAPSA-------------------IDASGQLSVGLDGKKL 239
+RDYTN LP +P A + SG L G+ G
Sbjct: 166 PVKMNRDYTNNSLPGDSQSKTSPQASILGAGTAFSTMKQGGFGSVPLSGVLPFGVTGSN- 224
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
+ +L++++ + V + L +FS +G V +I MF+ QAL+Q D A +A
Sbjct: 225 -DKCTLLVSNLH--EVLVYEEKLFNLFSGYGRVLRIKMFE--NAKQALVQLADGVQAELA 279
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
L+G + + IS+S+H + + R+RD+T+ NS+
Sbjct: 280 LNFLKGAPLLGSA---MEISFSKHN----TIRHPRTRDFTMDPYNRFNSE 322
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 68/133 (51%), Gaps = 23/133 (17%)
Query: 240 EPE------SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
EPE S VLLA I N Y + +D+LH VFS G ++KI +F K +QA I +
Sbjct: 67 EPENPKVEASRVLLAIIHNPLYQMNVDILHQVFSPHGNIEKIVIFHKAAAVQAFIVFDSD 126
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYS-------RHTDLSIKVNNDRSRDYTLPSTP-- 344
+ A AK AL+G I+DG CKL I +S + +K+N RDYT S P
Sbjct: 127 EAAAAAKSALQGRQIFDGC-CKLDIKFSIFAFRFLGNYKEPVKMN----RDYTNNSLPGD 181
Query: 345 ---MVNSQPSILG 354
+ Q SILG
Sbjct: 182 SQSKTSPQASILG 194
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-AMIS 73
PPSK+LH+ N+ E E +L+ P G + K NR QA +EF + QA A+ S
Sbjct: 329 PPSKILHISNVSDEVEEGDLLNFLAPHGVIQRVKLFESTNRRQALVEFDTIEQATEALAS 388
Query: 74 YYASSSEPAQVR 85
+ S + +R
Sbjct: 389 KHRSKLKATSLR 400
>gi|395535423|ref|XP_003769725.1| PREDICTED: polypyrimidine tract-binding protein 2 [Sarcophilus
harrisii]
Length = 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 139 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 198
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 199 ALDGQNIYNAC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 248
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 148/332 (44%), Gaps = 80/332 (24%)
Query: 57 QAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT 116
+AF+E A AI M++YY S+ +R + +Y+QYSN +E+ + T A VL
Sbjct: 58 EAFLELATEEAAITMVNYY--SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAV 115
Query: 117 ---------IEGTDA-------------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+ GT R+ V++DVLH +FS FG V KI TF
Sbjct: 116 TAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITF 175
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q+ D A AK ALDG++I CTLRI +S +L+VK+ +
Sbjct: 176 TKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNN 228
Query: 207 HRSRDYTNPYLPVAPS------AIDAS-----------GQLS------------------ 231
+SRDYT P LP AI A+ G LS
Sbjct: 229 DKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGR 288
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
VG+ G + +L++++ + VT L +F +G VQ++ + N ALIQ
Sbjct: 289 VGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMA 345
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
D + +A L G +Y G + ++ S+H
Sbjct: 346 DGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 374
>gi|402588250|gb|EJW82183.1| hypothetical protein WUBG_06907, partial [Wuchereria bancrofti]
Length = 255
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 219 VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
++ SA+D S + +P S VL IENM Y VTLDVLH +FS +G V +I F
Sbjct: 19 ISASALDISA-------CTQQQPNS-VLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITF 70
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
+KN QAL+Q + +A +A+++L+G +Y+G C L I YS+ L++K NND+SRDY
Sbjct: 71 NKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCC-LRIDYSKLATLNVKYNNDKSRDY 129
Query: 339 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
T P+ P S L QQ + AT G Q P ++ P A +GA P
Sbjct: 130 TNPNLP---SGELTLEQQLSLVSAAT-----GGQMGPAIAS--LVQSPFAFPFGAANP 177
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS +G V +I TF K FQALVQ S+ +A A+ +LDG+++
Sbjct: 49 VTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYN------ 102
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP 241
G C LRI YS L+VK+ + +SRDYTNP LP ++ L G ++ P
Sbjct: 103 -GCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAATGGQMGP 158
>gi|380801045|gb|AFE72398.1| regulator of differentiation 1 isoform 1, partial [Macaca mulatta]
Length = 456
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 75 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 134
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 135 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 191
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 192 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 220
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 221 FPQATGLSVPAVPGALG 237
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 40/192 (20%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ M++YY + +R + VY+QYSN +E+ +
Sbjct: 1 AFLEMASEEAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAV 58
Query: 105 TADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+A +G++ L + EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 59 SAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 118
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 119 TKNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNN 171
Query: 207 HRSRDYTNPYLP 218
+SRD+T LP
Sbjct: 172 DKSRDFTRLDLP 183
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 258 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 313
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 314 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 364
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 365 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 418
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 419 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 455
>gi|90085391|dbj|BAE91436.1| unnamed protein product [Macaca fascicularis]
Length = 352
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 71 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 130
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 131 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 187
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 40/182 (21%)
Query: 68 AIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNVLL 114
A+ M++YY + +R + VY+QYSN +E+ + +A +G++ L
Sbjct: 7 AVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLAL 64
Query: 115 V---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
+ EGT R+ V+++VLH +FS FG V KI TF K FQAL+
Sbjct: 65 SGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALL 124
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 125 QYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 177
Query: 217 LP 218
LP
Sbjct: 178 LP 179
>gi|170576691|ref|XP_001893730.1| hypothetical protein [Brugia malayi]
gi|158600096|gb|EDP37433.1| conserved hypothetical protein [Brugia malayi]
Length = 645
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 96/175 (54%), Gaps = 19/175 (10%)
Query: 219 VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
++ SA+D S + +P S VL IENM Y VTLDVLH +FS +G V +I F
Sbjct: 398 ISASALDISA-------CTQQQPNS-VLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITF 449
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
+KN QAL+Q + +A +A+++L+G +Y+G C L I YS+ L++K NND+SRDY
Sbjct: 450 NKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCC-LRIDYSKLATLNVKYNNDKSRDY 508
Query: 339 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA 393
T P+ P S L QQ + AT G Q P ++ P A +GA
Sbjct: 509 TNPNLP---SGELTLEQQLSLVSAAT-----GGQMGPTIAS--LVQSPFAFPFGA 553
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS +G V +I TF K FQALVQ S+ +A A+ +LDG+++
Sbjct: 428 VTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYN------ 481
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
G C LRI YS L+VK+ + +SRDYTNP LP ++ L G ++ P
Sbjct: 482 -GCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAATGGQMGPTIA 540
Query: 245 VLLAS 249
L+ S
Sbjct: 541 SLVQS 545
>gi|397507212|ref|XP_003824099.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Pan paniscus]
Length = 541
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 49/260 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R + PS+V H++ P + E E+I L PFGKV+N G +NQAFI+ + A
Sbjct: 52 RSARVPSRVTHIQKXPIDVIEGEVISLELPFGKVINLLMLKG--KNQAFIKMSTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQ-----------------EIVNNKTTADVAGN-- 111
M++YY S + P +RG+ +Y+Q+SN + + VN+ + ++A
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKGLKTDSSPNQARDPAAXQAVNSVQSGNLAWTAP 167
Query: 112 ---------------VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
VL + +E + ++DVLH +FS FG V K TF K FQAL+
Sbjct: 168 EAAVDAGMGMAGQSPVLRIIVENLFYPM-TLDVLHQIFSKFGTV-KTITFIKDNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHTDLSVKFQSHRSRDYTNP 215
Q++D E A K +LD ++ C TL I +S L+VK+ + +SRDY P
Sbjct: 226 QYTDPENAQHTKLSLDWQN--------TYNACHTLCIDFSKLISLNVKYSNDKSRDYXRP 277
Query: 216 YLPVAPSAIDASGQLSVGLD 235
LP S ++V D
Sbjct: 278 DLPSGDSXPSLDQXMAVAFD 297
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 18/172 (10%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA--SGQLS-----VGLD-GKKLEP 241
+ I +S H L +++RD P A A+++ SG L+ +D G +
Sbjct: 126 IYIQFSNHKGLKTDSSPNQARD------PAAXQAVNSVQSGNLAWTAPEAAVDAGMGMAG 179
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y +TLDVLH +FS FG V+ I F K+ QAL+QY D + A K
Sbjct: 180 QSPVLRIIVENLFYPMTLDVLHQIFSKFGTVKTIT-FIKDNQFQALLQYTDPENAQHTKL 238
Query: 302 ALEGHCIYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+L+ Y+ C L I +S+ L++K +ND+SRDY P P +S PS+
Sbjct: 239 SLDWQNTYNA--CHTLCIDFSKLISLNVKYSNDKSRDYXRPDLPSGDSXPSL 288
>gi|349732186|ref|NP_001231825.1| polypyrimidine tract-binding protein 3 isoform 4 [Homo sapiens]
gi|332832555|ref|XP_001149256.2| PREDICTED: polypyrimidine tract-binding protein 3 isoform 1 [Pan
troglodytes]
Length = 457
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 76 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 135
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 136 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 192
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 193 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 221
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 222 FPQATGLSVPAVPGALG 238
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 40/192 (20%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ M++YY + +R + VY+QYSN +E+ +
Sbjct: 2 AFLEMASEEAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAV 59
Query: 105 TADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+A +G++ L + EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 60 SAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 119
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 120 TKNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNN 172
Query: 207 HRSRDYTNPYLP 218
+SRD+T LP
Sbjct: 173 DKSRDFTRLDLP 184
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 259 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 314
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 315 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 365
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 366 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 419
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 420 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 456
>gi|392341647|ref|XP_003754390.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Rattus norvegicus]
gi|392349693|ref|XP_003750446.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Rattus norvegicus]
Length = 558
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 94/167 (56%), Gaps = 11/167 (6%)
Query: 226 ASGQLSVGLDGKK-LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL 284
AS + +D K + +S+VL +EN+ Y VTLDVLH +FS FG + K+ MF KN
Sbjct: 162 ASAASTAAVDAKMVMAGQSSVLRIIVENLFYPVTLDVLHQIFSKFGTILKLIMFTKNNQF 221
Query: 285 QALIQYPDVQTAVVAKEALEGHCIYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTLPST 343
QAL+Q + AK +L+G IY C LHI +S+ T L++K NND+SRDY P
Sbjct: 222 QALLQDAGPVSTQHAKLSLDGQNIYSA--CXTLHIDFSKLTSLNVKYNNDKSRDYRQPGL 279
Query: 344 PMVNSQPSILGQQPVPMVGA----TANQYNGAQFAP--PPPEQPMMH 384
P +SQPS+ Q + G + +QY GA+F P P P +H
Sbjct: 280 PSGDSQPSV-DQTMAAVFGTLSIMSVSQYAGARFPPTFAIPXVPNVH 325
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 115/249 (46%), Gaps = 51/249 (20%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+ +H+ LP + TE E+I LG PFGKV N G +NQAF E +
Sbjct: 50 RSIGVPSRDIHVCKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFTEMNTEEEDAN 107
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADVAGNVL 113
+ Y +S EP R T Y+ +SN +E+ VN+ + ++A
Sbjct: 108 TVVNYXTSVEPVLCRQPT-YIXFSNHEELKTHSSPNQARVQAALQAVNSIQSGNLAS--- 163
Query: 114 LVTIEGTDARLV-------------------SIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
+ DA++V ++DVLH +FS FG + K+ F K FQA
Sbjct: 164 AASTAAVDAKMVMAGQSSVLRIIVENLFYPVTLDVLHQIFSKFGTILKLIMFTKNNQFQA 223
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHTDLSVKFQSHRSRDYT 213
L+Q + + AK +LDG++I C TL I +S T L+VK+ + +SRDY
Sbjct: 224 LLQDAGPVSTQHAKLSLDGQNI--------YSACXTLHIDFSKLTSLNVKYNNDKSRDYR 275
Query: 214 NPYLPVAPS 222
P LP S
Sbjct: 276 QPGLPSGDS 284
>gi|324504709|gb|ADY42030.1| Regulator of differentiation 1 [Ascaris suum]
Length = 560
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
S L + + +P S VL IENM Y VTLDVLH +FS +G V +I F+KN QA
Sbjct: 138 SSALDISASCTQQQPNS-VLRVIIENMLYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQA 196
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
L+Q + +A +A+++L+G +Y+G C L I YS+ L++K NND+SRDYT P+ P
Sbjct: 197 LVQLSEATSAQMARQSLDGQNVYNGCCC-LRIDYSKLATLNVKYNNDKSRDYTNPNLP 253
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
+VL V IE V++DVLH +FS +G V +I TF K FQALVQ S+ +A A+ +
Sbjct: 154 SVLRVIIENM-LYPVTLDVLHQIFSRYGKVLRIITFNKNNTFQALVQLSEATSAQMARQS 212
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQL 230
LDG+++ G C LRI YS L+VK+ + +SRDYTNP LP ++ L
Sbjct: 213 LDGQNVYN-------GCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSL 265
Query: 231 SVGLDGKKLEPESNVLLAS 249
G ++ P L+ S
Sbjct: 266 VSAATGGQMGPAIASLVQS 284
>gi|312097472|ref|XP_003148986.1| hypothetical protein LOAG_13430 [Loa loa]
Length = 255
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 219 VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
++ SA+D S + +P S VL IENM Y VTLDVL+ +FS +G V +I F
Sbjct: 19 ISASALDISA-------CTQQQPNS-VLRVIIENMLYPVTLDVLYQIFSRYGKVLRIITF 70
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
+KN QAL+Q + +A +A+++L+G +Y+G C L I YS+ L++K NND+SRDY
Sbjct: 71 NKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCC-LRIDYSKLATLNVKYNNDKSRDY 129
Query: 339 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
T P+ P S L QQ + AT G Q P ++ P A +GA P
Sbjct: 130 TNPNLP---SGELTLEQQLSLVSAAT-----GGQMGPAIAS--LVQSPFAFPFGAANP 177
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVL+ +FS +G V +I TF K FQALVQ S+ +A A+ +LDG+++
Sbjct: 49 VTLDVLYQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYN------ 102
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP 241
G C LRI YS L+VK+ + +SRDYTNP LP ++ L G ++ P
Sbjct: 103 -GCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAATGGQMGP 158
>gi|393904664|gb|EJD73763.1| polypyrimidine tract-binding protein 1 [Loa loa]
Length = 546
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 219 VAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
++ SA+D S + +P S VL IENM Y VTLDVL+ +FS +G V +I F
Sbjct: 126 ISASALDISA-------CTQQQPNS-VLRVIIENMLYPVTLDVLYQIFSRYGKVLRIITF 177
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
+KN QAL+Q + +A +A+++L+G +Y+G C L I YS+ L++K NND+SRDY
Sbjct: 178 NKNNTFQALVQLSEANSAQLARQSLDGQNVYNGCCC-LRIDYSKLATLNVKYNNDKSRDY 236
Query: 339 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
T P+ P S L QQ + AT G Q P ++ P A +GA P
Sbjct: 237 TNPNLP---SGELTLEQQLSLVSAAT-----GGQMGPAIAS--LVQSPFAFPFGAANP 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVL+ +FS +G V +I TF K FQALVQ S+ +A A+ +LDG+++
Sbjct: 156 VTLDVLYQIFSRYGKVLRIITFNKNNTFQALVQLSEANSAQLARQSLDGQNVYN------ 209
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP 241
G C LRI YS L+VK+ + +SRDYTNP LP ++ L G ++ P
Sbjct: 210 -GCCCLRIDYSKLATLNVKYNNDKSRDYTNPNLPSGELTLEQQLSLVSAATGGQMGP 265
>gi|195391604|ref|XP_002054450.1| GJ22800 [Drosophila virilis]
gi|194152536|gb|EDW67970.1| GJ22800 [Drosophila virilis]
Length = 818
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E + Y V+LD+LH +F FG V KI F KN QALIQYPD +A AK L+
Sbjct: 434 VLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKSILD 493
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 494 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 532
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 102 NKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
N T A N +L I T VS+D+LH +F FG V KI TF K FQAL+Q+ D
Sbjct: 423 NNTNAAGGPNTVLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDA 482
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK+ LDG++I G CTLRI S T L+VK+ + +SRD+TNP LP
Sbjct: 483 HSAQQAKSILDGQNIYN-------GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGE 535
Query: 222 SAID 225
+D
Sbjct: 536 PGVD 539
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E +++ LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 277 SKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 333
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT 104
+ P Q+RG+ VY+Q+SN +E+ +++
Sbjct: 334 -TVNPPQMRGRMVYVQFSNHRELKTDQS 360
>gi|328788959|ref|XP_625087.3| PREDICTED: polypyrimidine tract-binding protein 2 [Apis mellifera]
Length = 449
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL +E M Y ++LDVL+ +F+ FG V KI F KN QALIQY D+ +A AK +
Sbjct: 33 NTVLRVIVEQMVYPISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLS 92
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
LEG IY+ C L I YS+ +L++K NND+SRDYT PS P
Sbjct: 93 LEGQNIYN-SCCTLRIDYSKMQNLNVKYNNDKSRDYTNPSLP 133
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 10/115 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+S+DVL+ +F+ FG V KI TF K FQAL+Q++D +A +AK +L+G++I
Sbjct: 47 ISLDVLYQIFTRFGKVLKIVTFTKNNTFQALIQYADMLSAQTAKLSLEGQNIYNSC---- 102
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL 239
CTLRI YS +L+VK+ + +SRDYTNP LP + +DA+ S+ L G+ L
Sbjct: 103 ---CTLRIDYSKMQNLNVKYNNDKSRDYTNPSLPTGDANLDAA---SLALGGELL 151
>gi|57004|emb|CAA43203.1| pyrimidine binding protein 2 [Rattus norvegicus]
Length = 367
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311
N+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY+
Sbjct: 1 NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN- 59
Query: 312 GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TANQ 367
C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A+
Sbjct: 60 ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSASP 118
Query: 368 YNGA 371
Y GA
Sbjct: 119 YAGA 122
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 6 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN------ 59
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 60 -ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 96
>gi|195055925|ref|XP_001994863.1| GH17472 [Drosophila grimshawi]
gi|193892626|gb|EDV91492.1| GH17472 [Drosophila grimshawi]
Length = 920
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E + Y V+LD+LH +F FG V KI F KN QALIQYPD +A AK L+
Sbjct: 540 VLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKSILD 599
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 600 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 638
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 102 NKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
N T A N +L I T VS+D+LH +F FG V KI TF K FQAL+Q+ D
Sbjct: 529 NNTNAAGGPNTVLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDA 588
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK+ LDG++I G CTLRI S T L+VK+ + +SRD+TNP LP
Sbjct: 589 HSAQQAKSILDGQNIYN-------GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGE 641
Query: 222 SAID 225
+D
Sbjct: 642 PGVD 645
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E +++ LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 382 SKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 438
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT 104
+ P Q+RG+ VY+Q+SN +E+ +++
Sbjct: 439 -TVNPPQMRGRMVYVQFSNHRELKTDQS 465
>gi|195110769|ref|XP_001999952.1| GI22798 [Drosophila mojavensis]
gi|193916546|gb|EDW15413.1| GI22798 [Drosophila mojavensis]
Length = 834
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E + Y V+LD+LH +F FG V KI F KN QALIQYPD +A AK L+
Sbjct: 450 VLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDAHSAQQAKSILD 509
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 510 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 548
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 102 NKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
N T A N +L I T VS+D+LH +F FG V KI TF K FQAL+Q+ D
Sbjct: 439 NNTNAAGGPNTVLRVIVETLMYPVSLDILHQIFQRFGKVLKIVTFTKNNSFQALIQYPDA 498
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
+A AK+ LDG++I G CTLRI S T L+VK+ + +SRD+TNP LP
Sbjct: 499 HSAQQAKSILDGQNIYN-------GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGE 551
Query: 222 SAID 225
+D
Sbjct: 552 PGVD 555
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E +++ LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 293 SKVIHLRNIPNESGESDVVALGIPFGRVTNVLVLKG--KNQAFIEMADEISATSMVSCY- 349
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT 104
+ P Q+RG+ VY+Q+SN +E+ +++
Sbjct: 350 -TVNPPQMRGRMVYVQFSNHRELKTDQS 376
>gi|193786069|dbj|BAG50959.1| unnamed protein product [Homo sapiens]
Length = 457
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 93/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 76 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 135
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ L++K NND+SRD+T P + QPS+
Sbjct: 136 NAHYAKMALDGQNIYNAC-CTLRIDFSKLISLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 192
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 193 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 221
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 222 FPQATGLSVPAVPGALG 238
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 40/192 (20%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------T 104
AF+E A A+ M++YY + +R + VY+QYSN +E+ +
Sbjct: 2 AFLEMASEEAAVTMVNYYTPITP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAV 59
Query: 105 TADVAGNVLLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTF 146
+A +G++ L + EGT R+ V+++VLH +FS FG V KI TF
Sbjct: 60 SAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITF 119
Query: 147 EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
K FQAL+Q++D A AK ALDG++I CTLRI +S L+VK+ +
Sbjct: 120 TKNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLRIDFSKLISLNVKYNN 172
Query: 207 HRSRDYTNPYLP 218
+SRD+T LP
Sbjct: 173 DKSRDFTRLDLP 184
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 259 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 314
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G + + LR T S H + + + + T +
Sbjct: 315 LAMNHLSG---------QRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 365
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 366 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 419
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 420 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 456
>gi|308509766|ref|XP_003117066.1| CRE-PTB-1 protein [Caenorhabditis remanei]
gi|308241980|gb|EFO85932.1| CRE-PTB-1 protein [Caenorhabditis remanei]
Length = 436
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 220 APSAID--ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
AP+ D A+G +S G + +P S VL IENM + V+L+VLH +F+ FG V +I
Sbjct: 25 APANTDSVANGSVSNFEVGTQQQPNS-VLRTIIENMMFPVSLEVLHQLFARFGKVLRIIT 83
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRD 337
F KN QAL+Q + +A +AK+ LE +Y+G C L I YS+ + L++K NND+SRD
Sbjct: 84 FSKNNTFQALVQMSEANSAQLAKQGLENQNVYNGC-CTLRIDYSKLSTLNVKYNNDKSRD 142
Query: 338 YTLPSTP 344
YT P+ P
Sbjct: 143 YTNPNLP 149
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VS++VLH +F+ FG V +I TF K FQALVQ S+ +A AK L+ +++
Sbjct: 63 VSLEVLHQLFARFGKVLRIITFSKNNTFQALVQMSEANSAQLAKQGLENQNVYN------ 116
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231
G CTLRI YS + L+VK+ + +SRDYTNP LP I+ + +S
Sbjct: 117 -GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTIEQTLAMS 162
>gi|294946321|ref|XP_002785022.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239898406|gb|EER16818.1| polypyrimidine tract binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 566
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 139/298 (46%), Gaps = 25/298 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKVL++RN+P +E+ LI + FG+V N + ++ FIEF + +A +YY
Sbjct: 36 SKVLYVRNIPMSLSEQNLIAYCQSFGQVTNIL--ILRDKRHGFIEFENETEARRCHAYY- 92
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-TADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
S+ P + G+ + S EI + +LL TI V++ ++ V S
Sbjct: 93 -SANPLTIDGQRLDFAISRFSEITGRRYPDLHPPNRILLFTITNV-VYPVNVSMIAQVMS 150
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITY 194
+ + K+ F + L+Q S E A +AK LDG++I + C T+R+ +
Sbjct: 151 RYNALEKVVIFTRGNATHCLIQTSSLEAAVAAKTQLDGQNIFTH--------CNTIRVQF 202
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVA-PSAIDASGQLS---VGLDGKKLEPESNVLLASI 250
S + L VK+ + RS DYTNP LP P A+ SG L G+ G P VL +
Sbjct: 203 SELSKLEVKYNNERSWDYTNPSLPSGPPGAMAGSGLLGPQQRGMSGVAATPVVFVLGLNE 262
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGH 306
++ T D L +F+ +G V K+ + K N L + + TA+ + + H
Sbjct: 263 KD----TTPDDLAALFAVYGNVVKVKIMYKARNSALVQMQTVGECHTAIAHLKGIRLH 316
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
L P + +LL +I N+ Y V + ++ V S + ++K+ +F + LIQ ++ AV
Sbjct: 122 LHPPNRILLFTITNVVYPVNVSMIAQVMSRYNALEKVVIFTRGNATHCLIQTSSLEAAVA 181
Query: 299 AKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
AK L+G I+ C + + +S + L +K NN+RS DYT PS P
Sbjct: 182 AKTQLDGQNIFT--HCNTIRVQFSELSKLEVKYNNERSWDYTNPSLP 226
>gi|365813382|pdb|3ZZY|A Chain A, Crystal Structure Of A Raver1 Pri3 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813383|pdb|3ZZY|B Chain B, Crystal Structure Of A Raver1 Pri3 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813386|pdb|3ZZZ|A Chain A, Crystal Structure Of A Raver1 Pri4 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
gi|365813387|pdb|3ZZZ|B Chain B, Crystal Structure Of A Raver1 Pri4 Peptide In Complex With
Polypyrimidine Tract Binding Protein Rrm2
Length = 130
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 78
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P
Sbjct: 79 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 126
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q++D +A AK +LDG++I
Sbjct: 40 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN------ 93
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 222
CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 94 -ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 130
>gi|198452628|ref|XP_001358876.2| GA15927, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198132005|gb|EAL28019.2| GA15927, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 785
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 401 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 460
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 461 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 499
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VS+D+LH +F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I
Sbjct: 413 VSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN------ 466
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
G CTLRI S T L+VK+ + +SRD+TNP LP +D
Sbjct: 467 -GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 506
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 246 SKVIHLRNIPNESGESDVIALGVPFGRVTNVLVLKG--KNQAFIEMADEMAATSMVSCY- 302
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG 110
+ P Q+RG+ VY+Q+SN +E+ +++ + G
Sbjct: 303 -TVNPPQMRGRMVYVQFSNHRELKTDQSHNNSVG 335
>gi|33414511|ref|NP_877970.1| polypyrimidine tract-binding protein [Rattus norvegicus]
gi|29824910|gb|AAO92353.1| SMPTB [Rattus norvegicus]
gi|149028489|gb|EDL83874.1| polypyrimidine tract-binding protein [Rattus norvegicus]
Length = 588
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN Y VTL+VLH +FS FG V KI KN QAL+QY V +A AK
Sbjct: 186 QSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKL 245
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
L+G IYD C L IS+S T+L +K NND+SRDY P P +SQPS
Sbjct: 246 FLDGQNIYDAC-CTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPS 294
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 8/107 (7%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
VL + +E R V+++VLH +FS FG V KI T K FQAL+Q++ +A AK L
Sbjct: 189 VLRILVENYFYR-VTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFL 247
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
DG++I CTLRI++S T+L VK+ + +SRDY P LP
Sbjct: 248 DGQNIYD-------ACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLP 287
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T+ PS+++H+ LP TE E++ L PFG+V N +NQAF+E + A MI
Sbjct: 24 TRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRA--KNQAFVEMSTEESANTMI 81
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEI-VNNKTTADVAGNVLLVTIEGTDARLVSI 127
+YY + P +RG+ V++Q+++ +E+ V++ + +++ + + E T + LV++
Sbjct: 82 NYY--TWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAV 135
>gi|47209150|emb|CAF89890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 569
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 31/180 (17%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR LP++ TE+E++ L PFG+V +K +NQ F+E A AI M++YY
Sbjct: 6 PSRVLHLRQLPFDITEQEVLALALPFGRV--SKLITLKAKNQGFLEMASEEAAITMMNYY 63
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE--------GTDARL--- 124
S+ P +R + V++QYS +E+ + T A + T G D R
Sbjct: 64 TSA--PPTIRNQPVFIQYSTHRELKTDNLTNQRAALQAISTASMHSGSMAAGGDGRGGVH 121
Query: 125 ----------------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VS++VL +FS FG V KI TF + FQAL+QFSD A AK
Sbjct: 122 AQSPVLRIIVENLFYPVSLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDAVHAQHAK 181
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR----- 191
FG V K+ T + A Q ++ + E A + N P T+R
Sbjct: 31 FGRVSKLITLK--AKNQGFLEMASEEAAITMMNYYTS------------APPTIRNQPVF 76
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPY--LPVAPSAIDASGQLSVGLDGKK-LEPESNVLLA 248
I YS H +L ++ + TN L +A SG ++ G DG+ + +S VL
Sbjct: 77 IQYSTHREL-------KTDNLTNQRAALQAISTASMHSGSMAAGGDGRGGVHAQSPVLRI 129
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
+EN+ Y V+L+VL +FS FG V KI F +N QAL+Q+ D A AK H
Sbjct: 130 IVENLFYPVSLEVLQQIFSKFGSVLKIITFTRNNQFQALLQFSDAVHAQHAKAVSHTH 187
>gi|390178277|ref|XP_003736615.1| GA15927, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859388|gb|EIM52688.1| GA15927, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 572
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 188 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 247
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 248 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 286
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VS+D+LH +F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I
Sbjct: 200 VSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN------ 253
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
G CTLRI S T L+VK+ + +SRD+TNP LP +D
Sbjct: 254 -GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 293
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 33 SKVIHLRNIPNESGESDVIALGVPFGRVTNVLVLKG--KNQAFIEMADEMAATSMVSCY- 89
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG 110
+ P Q+RG+ VY+Q+SN +E+ +++ + G
Sbjct: 90 -TVNPPQMRGRMVYVQFSNHRELKTDQSHNNSVG 122
>gi|341888906|gb|EGT44841.1| CBN-PTB-1 protein [Caenorhabditis brenneri]
Length = 509
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 86/154 (55%), Gaps = 5/154 (3%)
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
A+G +S G + +P S VL IENM + V+LDVLH +F+ +G V +I F KN Q
Sbjct: 107 ANGSVSNFEVGTQQQPNS-VLRTIIENMMFPVSLDVLHQLFARYGKVLRIITFSKNNTFQ 165
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP- 344
AL+Q + +A +AK LE +Y+G C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 166 ALVQMSEANSAQLAKAGLENQNVYNGC-CTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPA 224
Query: 345 --MVNSQPSILGQQPVPMVGATANQYNGAQFAPP 376
M Q L P AN YN A A P
Sbjct: 225 GEMTIEQSLALSSIPGLQNLLPANPYNFAFGANP 258
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
N +L TI VS+DVLH +F+ +G V +I TF K FQALVQ S+ +A AK
Sbjct: 123 NSVLRTIIENMMFPVSLDVLHQLFARYGKVLRIITFSKNNTFQALVQMSEANSAQLAKAG 182
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQL 230
L+ +++ G CTLRI YS + L+VK+ + +SRDYTNP LP I+ S L
Sbjct: 183 LENQNVYN-------GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTIEQSLAL 235
Query: 231 S 231
S
Sbjct: 236 S 236
>gi|50261257|gb|AAT72299.1| polypyrimidine tract binding protein [Drosophila melanogaster]
Length = 493
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 109 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 168
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 169 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 207
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 98/224 (43%), Gaps = 70/224 (31%)
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQE----------------------- 98
AD A +M+S Y + P Q+RG+ VY+Q+SN +E
Sbjct: 1 MADEISATSMVSCYTVT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPAS 58
Query: 99 ----------------------------IVNNKTTADVAGN---------VLLVTIEGTD 121
I+ N + + GN VL V +E
Sbjct: 59 GSPVPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL- 117
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
VS+D+LH +F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I
Sbjct: 118 MYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN--- 174
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
G CTLRI S T L+VK+ + +SRD+TNP LP +D
Sbjct: 175 ----GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 214
>gi|281362950|ref|NP_001163789.1| hephaestus, isoform Q [Drosophila melanogaster]
gi|272477266|gb|ACZ95082.1| hephaestus, isoform Q [Drosophila melanogaster]
Length = 493
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 109 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLD 168
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 169 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 207
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 98/224 (43%), Gaps = 70/224 (31%)
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQE----------------------- 98
AD A +M+S Y + P Q+RG+ VY+Q+SN +E
Sbjct: 1 MADEISATSMVSCYTVT--PPQMRGRMVYVQFSNHRELKTDQGHNNSTAHSDYSVQSPAS 58
Query: 99 ----------------------------IVNNKTTADVAGN---------VLLVTIEGTD 121
I+ N + + GN VL V +E
Sbjct: 59 GSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAGGPNTVLRVIVESL- 117
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
VS+D+LH +F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I
Sbjct: 118 MYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDGQNIYN--- 174
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
G CTLRI S T L+VK+ + +SRD+TNP LP +D
Sbjct: 175 ----GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 214
>gi|195446082|ref|XP_002070619.1| GK10936 [Drosophila willistoni]
gi|194166704|gb|EDW81605.1| GK10936 [Drosophila willistoni]
Length = 629
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL +E++ Y V+LD+LH +F +G V KI F KN QALIQYPD +A AK L+
Sbjct: 194 VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDAHSAQHAKSLLD 253
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
G IY+ G C L I S+ T L++K NND+SRD+T P+ P
Sbjct: 254 GQNIYN-GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALP 292
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VS+D+LH +F +G V KI TF K FQAL+Q+ D +A AK+ LDG++I
Sbjct: 206 VSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDAHSAQHAKSLLDGQNIYN------ 259
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
G CTLRI S T L+VK+ + +SRD+TNP LP +D
Sbjct: 260 -GCCTLRIDNSKLTALNVKYNNDKSRDFTNPALPPGEPGVD 299
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+HLRN+P E E ++I LG PFG+V N G +NQAFIE AD A +M+S Y
Sbjct: 33 SKVIHLRNIPNESGESDVISLGIPFGRVTNVLVLKG--KNQAFIEMADEVAATSMVSCYT 90
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT 104
S P Q+RG+ VY+Q+SN +E+ +++
Sbjct: 91 VS--PPQMRGRMVYVQFSNHRELKTDQS 116
>gi|326428995|gb|EGD74565.1| hypothetical protein PTSG_05929 [Salpingoeca sp. ATCC 50818]
Length = 554
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 26/222 (11%)
Query: 7 QPQFRYTQ----PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+P F+ + PPS V+H+R+LP T +++ +PFG +VN ++ NR+Q EF
Sbjct: 2 EPDFKRPKMAQIPPSPVVHIRSLPPHTTPQDIHAALEPFGAIVNV--SLIPNRSQGLAEF 59
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD----VAGNVLLVTIE 118
D++ A + ++P V+G+ VY+ +S Q++ V G VL++T+
Sbjct: 60 TDVHTASRCVYSSQQGTQPVFVKGRQVYINFSTSQKVHTQAGDTSQPYAVPGKVLMMTVM 119
Query: 119 GTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQ-------ALVQFSDTETASSAKNAL 171
+ +++DV++ V S G V +I K G Q ALV+F D TA++ ++L
Sbjct: 120 NA-SYPINVDVIYAVCSPLGRVLRIVMIRKN-GVQSAPPTARALVEFPDANTAAAVMSSL 177
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G +I G CTLRI YS ++V++ S +RD+T
Sbjct: 178 QGANI-------YQGCCTLRIEYSKADRVNVRYNSEETRDFT 212
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG------GLQALIQYPDVQTAV 297
VL+ ++ N Y + +DV++ V S G V +I M KNG +AL+++PD TA
Sbjct: 112 KVLMMTVMNASYPINVDVIYAVCSPLGRVLRIVMIRKNGVQSAPPTARALVEFPDANTAA 171
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
+L+G IY G C L I YS+ ++++ N++ +RD+T+
Sbjct: 172 AVMSSLQGANIYQ-GCCTLRIEYSKADRVNVRYNSEETRDFTV 213
>gi|395745998|ref|XP_003778369.1| PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding
protein 1-like [Pongo abelii]
Length = 551
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/396 (29%), Positives = 183/396 (46%), Gaps = 94/396 (23%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V H++ LP + TE E+I L PFG V N G +NQAFIE A + +YY
Sbjct: 57 PSRVTHIQKLPXDVTEGEVISLELPFGNVTNLLMLKG--KNQAFIELRTEGAANTVENYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT---TADVA----------GNVLLVT-IEGTD 121
S + +RG+ +Y+Q+SN + + + + D+A GN+ L D
Sbjct: 115 TSVT--PVLRGQPIYIQFSNHKGLKTDSSPNQARDLAAXQAVNSVQSGNLALTAPAAAVD 172
Query: 122 A-----------RLV--------SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
A R++ ++DVLH +FS FG V+ I TF K FQAL+Q++D E
Sbjct: 173 AGMAMAGQSPVLRIIVENLFYPMTLDVLHQIFSKFGKVNTI-TFIKDNQFQALLQYADPE 231
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP---- 218
A AK +LD ++ + TL I +S T L+V++ +S DY P LP
Sbjct: 232 NAQHAKLSLDWQNTYNACI-------TLCIDFSKLTSLNVRYND-KSSDYXRPDLPSRDS 283
Query: 219 ----------------------VAPSAI-------DASGQLSV-GLDGKKLEPESNVLLA 248
+AP AI A+G+++ GL G ++VLL
Sbjct: 284 QPSLDQXMAAAFDLSVPNIHGALAPLAIPLAVAAAAAAGRIATPGLAGAG----NSVLLV 339
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
S N + VT L ++FS +G VQ + + F+K AL+Q D A +A H
Sbjct: 340 SNLNPER-VTPQSLFILFSVYGDVQCVKISFNKE---NALVQMADGNQAQLALSHRNWHK 395
Query: 308 IYDGGFCKL-HISYSRHTDLSI----KVNNDRSRDY 338
++ +L I+ S+H ++ + + + D ++DY
Sbjct: 396 LHGKPPHRLVRITPSKHQNVQLPREGREDQDLTKDY 431
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA--SGQLSV-----GLD-GKKLEPES 243
I +S H L +++RD A A+++ SG L++ +D G + +S
Sbjct: 128 IQFSNHKGLKTDSSPNQARDLA------AXQAVNSVQSGNLALTAPAAAVDAGMAMAGQS 181
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL +EN+ Y +TLDVLH +FS FG V I F K+ QAL+QY D + A AK +L
Sbjct: 182 PVLRIIVENLFYPMTLDVLHQIFSKFGKVNTIT-FIKDNQFQALLQYADPENAQHAKLSL 240
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+ Y+ L I +S+ T L+++ ND+S DY P P +SQPS+
Sbjct: 241 DWQNTYNACIT-LCIDFSKLTSLNVRY-NDKSSDYXRPDLPSRDSQPSL 287
>gi|25146814|ref|NP_741042.1| Protein PTB-1, isoform b [Caenorhabditis elegans]
gi|20338919|emb|CAD30435.1| Protein PTB-1, isoform b [Caenorhabditis elegans]
Length = 453
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
A+G +S G + +P S VL IENM + V+LDVL+ +F+ +G V +I F+KN Q
Sbjct: 51 ANGSVSNFEVGTQQQPNS-VLRTIIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQ 109
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
AL+Q + +A +AK+ LE +Y+G C L I YS+ + L++K NND+SRDYT P+ P
Sbjct: 110 ALVQMSEANSAQLAKQGLENQNVYNGC-CTLRIDYSKLSTLNVKYNNDKSRDYTNPNLP 167
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 7/108 (6%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
VS+DVL+ +F+ +G V +I TF K FQALVQ S+ +A AK L+ +++
Sbjct: 81 VSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNVYN------ 134
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
G CTLRI YS + L+VK+ + +SRDYTNP LP ++ + +S+
Sbjct: 135 -GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSI 181
>gi|226468144|emb|CAX76299.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 436
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 42 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 99
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 100 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 157
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 158 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 217
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 218 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 252
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 111 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 170
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 171 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 229
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 230 QFSKNRGPLEVRQESEKCRDY 250
>gi|76157758|gb|AAX28586.2| SJCHGC05650 protein [Schistosoma japonicum]
Length = 381
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 54 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 112 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 169
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 170 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 229
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 230 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 264
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 123 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 182
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 183 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 241
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 242 QFSKNRGPLEVRQESEKCRDY 262
>gi|354498135|ref|XP_003511171.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Cricetulus
griseus]
gi|344255182|gb|EGW11286.1| Polypyrimidine tract-binding protein 1 [Cricetulus griseus]
Length = 575
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN Y VTL+VLH +FS FG V KI ++ KN Q L+QY +
Sbjct: 188 GTAVARQSPVLRILVENYFYQVTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQYAHPLS 247
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQP 350
A AK L+G IYD C L I++S TDL++K NN++SRDYT P P +SQP
Sbjct: 248 AQRAKLFLDGQNIYD-ACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLPSGDSQP 301
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 131/302 (43%), Gaps = 75/302 (24%)
Query: 99 IVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQF 158
+V+ T VL + +E + V+++VLH +FS FG V KI + K + FQ L+Q+
Sbjct: 184 VVDTGTAVARQSPVLRILVENYFYQ-VTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQY 242
Query: 159 SDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
+ +A AK LDG++I CTLRI +S TDL+VK+ + +SRDYT P LP
Sbjct: 243 AHPLSAQRAKLFLDGQNIYD-------ACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLP 295
Query: 219 V----------------APSAIDAS-------------GQLSVGLD----GKKLEP---- 241
AP I AS Q++ GL K L P
Sbjct: 296 SGDSQPLPAQKMTTAFGAPVVIAASPHASPGVPHTFAFSQVAAGLAMPEVCKALAPLAVP 355
Query: 242 -----------------------ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
+ VLL + N + VT L ++F A+G VQ++ +
Sbjct: 356 EVVVAAAAAAAESTVVTSGSPGGANAVLLVANLNPE-KVTPQSLFILFGAYGNVQRVKIL 414
Query: 279 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
N AL+Q D A +A + L GH ++ C I S+H LS+K+ + D
Sbjct: 415 -YNRKENALVQMADGCQAELALKHLNGHKLHGKSLC---IMPSKH--LSVKLPREGKEDQ 468
Query: 339 TL 340
L
Sbjct: 469 GL 470
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T+ PSKV+H+ +P TE E++ L PFGKV N G +NQA +E + A A
Sbjct: 22 RRTEGPSKVIHIHRMPNSVTEREVLCLALPFGKVSNLMLLKG--KNQALMEMSTEENANA 79
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
M++YY + P +RG+ +++Q+S+ +E+
Sbjct: 80 MVNYYTWVT-PV-LRGQPIHIQFSHYKEL 106
>gi|350583628|ref|XP_003125947.3| PREDICTED: polypyrimidine tract-binding protein 2-like [Sus scrofa]
Length = 345
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
M Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 1 MYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNAC 60
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 61 -CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 99
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 48/234 (20%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
V++DVLH +FS FG V KI TF K FQAL+Q+ D A AK ALDG++I
Sbjct: 5 VTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN------ 58
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS----------- 227
CTLRI +S +L+VK+ + +SRDYT P LP AI A+
Sbjct: 59 -ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVP 117
Query: 228 GQLS------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269
G LS VG+ G + +L++++ + VT L +F +
Sbjct: 118 GALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVY 175
Query: 270 GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
G VQ++ + N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 176 GDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 225
>gi|226472640|emb|CAX71006.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 596
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 28 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 85
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 86 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 143
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 144 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 203
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 204 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 238
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 97 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 156
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 157 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 215
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 216 QFSKNRGPLEVRQESEKCRDY 236
>gi|226468148|emb|CAX76301.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 610
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 42 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 99
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 100 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 157
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 158 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 217
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 218 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 252
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 111 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 170
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 171 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 229
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 230 QFSKNRGPLEVRQESEKCRDY 250
>gi|226472642|emb|CAX71007.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 622
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 54 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 112 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 169
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 170 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 229
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 230 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 264
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 123 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 182
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 183 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 241
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 242 QFSKNRGPLEVRQESEKCRDY 262
>gi|226468146|emb|CAX76300.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 622
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 54 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 111
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+T+ +QYS Q + N D++G VL
Sbjct: 112 REYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVL 169
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 170 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 229
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 230 QNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 264
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 123 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 182
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 183 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 241
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 242 QFSKNRGPLEVRQESEKCRDY 262
>gi|90075792|dbj|BAE87576.1| unnamed protein product [Macaca fascicularis]
Length = 226
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 88/172 (51%), Gaps = 34/172 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I L PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALKLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVLH +FS FG V KI TF K FQAL+Q
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQ 224
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+Q
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQ 224
>gi|256077460|ref|XP_002575022.1| polypyrimidine tract binding protein [Schistosoma mansoni]
gi|360043943|emb|CCD81489.1| putative polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 597
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+P + TE E+ LG PFG + N + A NQA +E L AI M+SYY
Sbjct: 28 PSKVVHIRNMPDDATEHEIALLGIPFGLLENMVLSKKA--NQALLEMQCLESAIMMVSYY 85
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVAG-------NVL 113
+RG+ + +QYS Q + N D++G VL
Sbjct: 86 REYQ--VTLRGRNLVMQYSKHQHLELHSENSSIGNAIQNANCIVQQDLSGANSGMPTTVL 143
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
V ++ + ++ +LH +F +G + +I T+ K + LV+F + A A L+G
Sbjct: 144 RVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNG 203
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
++I G C+LR+ +S + L V+ +S R RDY N
Sbjct: 204 QNIY-------TGCCSLRVQFSKNRGPLEVRQESDRCRDYLN 238
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 199 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAV 257
+L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 96 NLVMQYSKHQHLELHSENSSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQI 155
Query: 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317
+LH +F +G + +I + KN L+++ + A VA L G IY G C L
Sbjct: 156 NHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLR 214
Query: 318 ISYSRHTD-LSIKVNNDRSRDY 338
+ +S++ L ++ +DR RDY
Sbjct: 215 VQFSKNRGPLEVRQESDRCRDY 236
>gi|410933304|ref|XP_003980031.1| PREDICTED: polypyrimidine tract-binding protein 2-like, partial
[Takifugu rubripes]
Length = 345
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 148/343 (43%), Gaps = 58/343 (16%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E AI M++Y
Sbjct: 27 PPSRVLHIRKLPNEATETEIIALGLPFGKVTNILTLKG--KNQAFLEMGTEEAAITMVNY 84
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI---VNNKTTADVA---------------------- 109
YA+ + VR V++QYSN +E+ N+ A A
Sbjct: 85 YATVT--PHVRNIPVFIQYSNHKELKTDAGNQVCASSASHLRALTPLSAAAAAAAAAGRV 142
Query: 110 --------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDT 161
G VLLV+ + +V+ L +F +G V ++ AL+Q SD
Sbjct: 143 ALAGQAGSGGVLLVS--NLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKD-SALIQMSDA 199
Query: 162 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221
A A + L+G + M +R+T S H +++ + T Y
Sbjct: 200 NQAQLAMSHLNG---------QKMYGKIIRVTLSKHQSVALPRDGLDDQGLTKDYANSPL 250
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
G + + + P S L + N+ VT D L ++FS G K F ++
Sbjct: 251 HRFKKPGSKNF----QNIFPPSATL--HLSNIPQNVTEDDLRLLFSNTGGTVKAFKFFQD 304
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
+ ALIQ V+ A+ A ++ H GG L +S+S+ T
Sbjct: 305 RKM-ALIQMSTVEEAIQA--LIDLHNYNMGGNQHLRVSFSKST 344
>gi|148700268|gb|EDL32215.1| mCG50057 [Mus musculus]
Length = 253
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 37/196 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAF E A
Sbjct: 62 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFTEMNTEETANT 119
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------TADVAGNVLL--- 114
M++YY S + P +RG+ +Y+Q+SN +E+ + + + +GN+ L
Sbjct: 120 MVNYYTSVA-PV-LRGQPIYIQFSNHKELETDSSPNQARAQAALQAVNSVHSGNLALAAS 177
Query: 115 -------VTIEGTDARL----------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+ + G L V++D++H +FS FG V KI TF K FQAL+Q
Sbjct: 178 AAAVDAGMAMAGQSPALRIIVENLFYPVTLDMVHQIFSKFGTVLKIITFTKNNQFQALLQ 237
Query: 158 FSDTETASSAKNALDG 173
++D +A AK +LDG
Sbjct: 238 YADPVSAQHAKLSLDG 253
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S L +EN+ Y VTLD++H +FS FG V KI F KN QAL+QY D +
Sbjct: 184 GMAMAGQSPALRIIVENLFYPVTLDMVHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 243
Query: 296 AVVAKEALEG 305
A AK +L+G
Sbjct: 244 AQHAKLSLDG 253
>gi|325184968|emb|CCA19460.1| hypothetical protein SELMODRAFT_173175 [Albugo laibachii Nc14]
Length = 466
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 56/369 (15%)
Query: 13 TQPPSKVLHLRNLPWECTEEEL---IELGKPFGKVV---NTKCNVGANRN---------- 56
T+ SKVL++ +P+ TEE L +EL F KV+ C A +
Sbjct: 14 TKVHSKVLYVDKIPFYWTEETLKRNLELYGTFSKVLLLRKRNCFYSAYQESSTQRPISFI 73
Query: 57 QAFIEFADLNQAIAMISYYASSSEPAQVR-GKTVYLQYSNRQEI-----VNNKTTADVAG 110
QA ++ D + A A P G+ + + ++ EI N+ T +D
Sbjct: 74 QALVQAEDADNAAAFTQL--CRQHPIMTEEGEPLLIDFAKVAEIRQPNDTNSSTDSDHRN 131
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
+LLVT++ ++ D++ +FS FG V KI FEK G Q L+Q S E A++AK A
Sbjct: 132 RILLVTVQNP-LYPITADLMASIFSYFGKVEKIVIFEKAIGLQCLIQLSFIEDATAAKKA 190
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHT-DLSVKFQSHRSRDYTNPYLPVAP-------- 221
L+G +I P+ C L I YS + +L VK R+ D+TN L P
Sbjct: 191 LNGVNI----FPD---CCCLIIHYSKLSQELVVKTNGPRTWDFTNSNLSNQPDGNEADIA 243
Query: 222 ----SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
AI+ + + + E E+ VL S N++ +VT D L +FS +G V ++
Sbjct: 244 LETCEAINKAAFATANMTNSGQEIETLVLFVS--NLRESVTCDQLFNLFSCYGNVARVKK 301
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRD 337
F+ AL+Q+ A A L G ++ L I++S+H +++ + +++
Sbjct: 302 FNSKPD-HALVQFSTPAFAQSALLHLRGFTLFGRS---LEITFSKHAYINVSAGSSKTK- 356
Query: 338 YTLPSTPMV 346
ST MV
Sbjct: 357 ----STGMV 361
>gi|328869052|gb|EGG17430.1| hypothetical protein DFA_08425 [Dictyostelium fasciculatum]
Length = 603
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
P N+LL +IEN V +D+L+ FS +G V +I +F+K+ LQAL++Y + A A
Sbjct: 122 RPIGNILLCTIENATMTVNVDLLNHFFSLYGEVLRIVIFNKSVNLQALVEYSSPELAFHA 181
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT--LPS 342
K+ L+G +Y GG+C L I S+ L++ +NNDR+RDYT LPS
Sbjct: 182 KKLLQGAMLYQGGYCVLRIEISKVDRLNVTLNNDRTRDYTKNLPS 226
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 25 LPWECTEEELIEL--GKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPA 82
+P E TE+EL+ G FG+ + +G + QA +E + A +I++ + P
Sbjct: 47 VPAEATEQELLAFVKGYSFGRPIVAVKILG--KLQALVETDSVETASRIIAF--ARETPI 102
Query: 83 QVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHK 142
GK + +YSN + I NN+ GN+LL TIE V++D+L+ FS +G V +
Sbjct: 103 IFHGKPLQFEYSNSKTI-NNRPI----GNILLCTIENA-TMTVNVDLLNHFFSLYGEVLR 156
Query: 143 ITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV 202
I F K+ QALV++S E A AK L G + + G C LRI S L+V
Sbjct: 157 IVIFNKSVNLQALVEYSSPELAFHAKKLLQGAMLYQ------GGYCVLRIEISKVDRLNV 210
Query: 203 KFQSHRSRDYT 213
+ R+RDYT
Sbjct: 211 TLNNDRTRDYT 221
>gi|345330029|ref|XP_003431460.1| PREDICTED: regulator of differentiation 1-like [Ornithorhynchus
anatinus]
Length = 670
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 36/185 (19%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A A+ M++YY
Sbjct: 55 PSRVLHLRKIPNDVTETEVISLGLPFGKVTNLLMLKG--KSQAFLEMASEEAAVTMVNYY 112
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNK------------------------TTADVAGN 111
+ +R + V++QYSN +E+ + TA AG+
Sbjct: 113 TPVT--PHLRSQPVFIQYSNHRELKTDNLPNQARAQAALQAVNAVQSGSLPTLTAAPAGD 170
Query: 112 VLLVTIEGTDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
L+ + + R+ V+++VL+ +F FG V KI TF K FQAL+QF+D
Sbjct: 171 SGLLPGQSSVLRIIVENLFYPVTLEVLYQIFFKFGTVLKIITFTKNNQFQALLQFADPMN 230
Query: 164 ASSAK 168
A AK
Sbjct: 231 AHYAK 235
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
D L +S+VL +EN+ Y VTL+VL+ +F FG V KI F KN QAL+Q+ D
Sbjct: 170 DSGLLPGQSSVLRIIVENLFYPVTLEVLYQIFFKFGTVLKIITFTKNNQFQALLQFADPM 229
Query: 295 TAVVAK 300
A AK
Sbjct: 230 NAHYAK 235
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 20/196 (10%)
Query: 130 LHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
L ++F +G VH++ F K ALVQ +D A A N L G + +
Sbjct: 493 LFILFGVYGDVHRVKIMFNKKEN--ALVQMADANQAQLAMNHLSG---------QRLYGK 541
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 248
LR T S H + + + + T Y G + + + P S L
Sbjct: 542 VLRATLSRHQSVQLPREGQEDQGLTKDYSNSPLHRFKKPGSKNF----QNIFPPSATL-- 595
Query: 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
+ N+ +VT+D L +F+ G K F + ALIQ V+ A+ A L H +
Sbjct: 596 HLSNIPPSVTVDDLKNLFADAGCTVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL 655
Query: 309 YDGGFCKLHISYSRHT 324
G L +S+S+ T
Sbjct: 656 --GENHHLRVSFSKST 669
>gi|387018124|gb|AFJ51180.1| Heterogeneous nuclear ribonucleoprotein L-like [Crotalus
adamanteus]
Length = 539
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF D+ A +++
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFEDIESAKKCVTF 127
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 128 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 184
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 185 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 236
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 237 EYARPTRLNVIRNDNDSWDYTKPYL 261
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 163 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 221
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 222 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 277
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA-------VPPASQSMPMMGNHPYMPPGSM 415
+ + + P P+ + A +P AS S GN P GS+
Sbjct: 278 EHPSSFRHDGYGSHGPLLPLPSRYRMASRDTPELVAYPLPQASSSYMHGGN----PSGSV 333
Query: 416 PMGPGMMQMHM 426
M G+ Q M
Sbjct: 334 VMVSGLHQQKM 344
>gi|390332442|ref|XP_003723501.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 4
[Strongylocentrotus purpuratus]
Length = 662
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 319 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 378
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 379 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 414
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 41/238 (17%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+L V +E + +++D LH +F +G V +I TF K+ FQALVQFSD A+ AK L
Sbjct: 321 ILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLEL 379
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN----------------- 214
DG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 380 DGKNIYNNC-------CQLRIDFSKLTNLSVKYNNEKSRDYTCDLPQGDGLTGVDPSTAA 432
Query: 215 ----PYLPVAPSAI---DASGQLSVGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVF 266
P P SA+ A+ + + G + S+V+L S N+ VT L +F
Sbjct: 433 MLGVPGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVS--NLTPELVTPQALFTLF 490
Query: 267 SAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+G VQ++ +++K ALIQ D + +A + L G +Y ++ ++ S+H
Sbjct: 491 GVYGDVQRVKILYEKRDN--ALIQMSDPNQSQLAMKHLSGVKLYGK---QIRVTASKH 543
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 109 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 166
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+ P V G+ +Y Q+S +E+
Sbjct: 167 --THMPRNVHGRQIYCQFSKHKEL 188
>gi|390332446|ref|XP_003723503.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 6
[Strongylocentrotus purpuratus]
Length = 603
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 260 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 319
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 320 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 355
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 41/238 (17%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+L V +E + +++D LH +F +G V +I TF K+ FQALVQFSD A+ AK L
Sbjct: 262 ILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLEL 320
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN----------------- 214
DG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 321 DGKNIYN-------NCCQLRIDFSKLTNLSVKYNNEKSRDYTCDLPQGDGLTGVDPSTAA 373
Query: 215 ----PYLPVAPSAI---DASGQLSVGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVF 266
P P SA+ A+ + + G + S+V+L S N+ VT L +F
Sbjct: 374 MLGVPGFPAGLSALPHHAAAAAQGMRMPGMYMPSGSSVILVS--NLTPELVTPQALFTLF 431
Query: 267 SAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323
+G VQ++ +++K ALIQ D + +A + L G +Y ++ ++ S+H
Sbjct: 432 GVYGDVQRVKILYEKRDN--ALIQMSDPNQSQLAMKHLSGVKLYGK---QIRVTASKH 484
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 50 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 107
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+ P V G+ +Y Q+S +E+
Sbjct: 108 --THMPRNVHGRQIYCQFSKHKEL 129
>gi|390332437|ref|XP_003723500.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 3
[Strongylocentrotus purpuratus]
Length = 649
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 272 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 331
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 332 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 367
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+L V +E + +++D LH +F +G V +I TF K+ FQALVQFSD A+ AK L
Sbjct: 274 ILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLEL 332
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
DG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 333 DGKNIYNNC-------CQLRIDFSKLTNLSVKYNNEKSRDYT 367
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 62 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 119
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+ P V G+ +Y Q+S +E+
Sbjct: 120 --THMPRNVHGRQIYCQFSKHKEL 141
>gi|327262697|ref|XP_003216160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Anolis
carolinensis]
Length = 551
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF D+ + +++
Sbjct: 84 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFEDIESSKKCVTF 139
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 140 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 196
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 197 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 248
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 249 EYARPTRLNVTQNDNDSWDYTKPYL 273
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 7/120 (5%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 175 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 233
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS-----QPSILGQQP 357
L G IY G C L I Y+R T L++ N++ S DYT P + + +ILG+ P
Sbjct: 234 LNGADIY-AGCCTLKIEYARPTRLNVTQNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHP 292
>gi|390332439|ref|XP_780392.3| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 7
[Strongylocentrotus purpuratus]
Length = 659
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 282 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 341
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 342 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 377
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+L V +E + +++D LH +F +G V +I TF K+ FQALVQFSD A+ AK L
Sbjct: 284 ILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLEL 342
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
DG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 343 DGKNIYN-------NCCQLRIDFSKLTNLSVKYNNEKSRDYT 377
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 72 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 129
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+ P V G+ +Y Q+S +E+
Sbjct: 130 --THMPRNVHGRQIYCQFSKHKEL 151
>gi|390332435|ref|XP_003723499.1| PREDICTED: polypyrimidine tract-binding protein 3-like isoform 2
[Strongylocentrotus purpuratus]
Length = 631
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ +L +EN+ Y +T+D LH +F +G V +I F K+G QAL+Q+ D A VAK
Sbjct: 254 NTILRVIVENVTYQITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLE 313
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L+G IY+ C+L I +S+ T+LS+K NN++SRDYT
Sbjct: 314 LDGKNIYN-NCCQLRIDFSKLTNLSVKYNNEKSRDYT 349
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 8/102 (7%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+L V +E + +++D LH +F +G V +I TF K+ FQALVQFSD A+ AK L
Sbjct: 256 ILRVIVENVTYQ-ITVDTLHEIFRKYGTVLRIVTFIKSGQFQALVQFSDASQAAVAKLEL 314
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
DG++I C LRI +S T+LSVK+ + +SRDYT
Sbjct: 315 DGKNIYN-------NCCQLRIDFSKLTNLSVKYNNEKSRDYT 349
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RNL E + +++ L P G+V TK + +NQAF+E AD A I++Y
Sbjct: 44 PSRVVHIRNLANEALDADVLSLALPIGRV--TKYLMLKGKNQAFLEMADEATAQTFINHY 101
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+ P V G+ +Y Q+S +E+
Sbjct: 102 --THMPRNVHGRQIYCQFSKHKEL 123
>gi|348522987|ref|XP_003449005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oreochromis niloticus]
Length = 527
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 106/215 (49%), Gaps = 15/215 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + V N+ QA +E+ D+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEADLVEALQEFGAI--SYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD--VAGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSQKISRPGDSDDSRTVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG 228
Y+ T L+V + DYTNP L D +G
Sbjct: 203 YAKPTRLNVFKNDQDTWDYTNPNLGGPDGDADGNG 237
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 41/217 (18%)
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E+M + +TY+A + Y+ P+ I+ S + G +
Sbjct: 81 EDMNGSSTAVTYAADNQV---------------YIAGHPAFINYSTSQKISRPGDSDDSR 125
Query: 243 S--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+ NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK
Sbjct: 126 TVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP--------------STPMV 346
+L G IY G C L I Y++ T L++ N+ + DYT P + V
Sbjct: 185 ASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLGGPDGDADGNGSNADDV 243
Query: 347 NS-------QPSILGQQPVPMVGATANQYNGAQFAPP 376
N+ QP++LG P P G + Y+ + +PP
Sbjct: 244 NANPNKRQRQPALLGDHP-PEYGGGYHGYDESYGSPP 279
>gi|302820932|ref|XP_002992131.1| hypothetical protein SELMODRAFT_430388 [Selaginella moellendorffii]
gi|300140057|gb|EFJ06786.1| hypothetical protein SELMODRAFT_430388 [Selaginella moellendorffii]
Length = 695
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 156/349 (44%), Gaps = 52/349 (14%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKVLH RNL EL +L +PFG V + + R QA +E ++ QA ++ ++
Sbjct: 47 PSKVLHFRNLTPYIRRGELEKLVRPFGSVTSYRLT---TRTQALLEMKNVKQAKKVVDHF 103
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT-AD----VAGNVLLVTIEGTDARLVSID-- 128
SS A V+ VY+ +S QE+ + + AD + VL VT+ + ID
Sbjct: 104 --SSAKALVKKTEVYVGFSRFQELEKDVSRLADPKQGASSKVLAVTVTNP---IYPIDVY 158
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
VLH VF G V KIT K G +QF +TA+ K+ L+ R I G C
Sbjct: 159 VLHRVFCPHGSVEKITISRKL-GICGYIQFDSVKTAAHVKDLLNDRHIFD-------GCC 210
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA----PSAIDASGQLSV-GLDGKK----- 238
+ I Y+ +L V F +RD+ + +P PS + A SV L +
Sbjct: 211 KMEIQYAKSQELGVYFNDDNNRDFKDTSIPSRVRSDPSILGAPPVESVPALTAEDAAAGA 270
Query: 239 --------LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
+ V+ S N++ V D L +FS +G ++K+ + G Q LI+
Sbjct: 271 PAVVPTPFIGRRKRVVRVSNLNVE-KVDEDKLFNLFSPYGKIRKVQVIKVTG--QGLIEM 327
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
D A +A L+G +++ + + ++N ++SRDYT
Sbjct: 328 SDAFQAELASACLKGARVFEKELDTVVVDK--------ELNLNQSRDYT 368
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
S VL ++ N Y + + VLH VF G V+KI + + G+ IQ+ V+TA K+
Sbjct: 141 SKVLAVTVTNPIYPIDVYVLHRVFCPHGSVEKITI-SRKLGICGYIQFDSVKTAAHVKDL 199
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP-MVNSQPSILGQQPVPMV 361
L I+DG CK+ I Y++ +L + N+D +RD+ S P V S PSILG PV V
Sbjct: 200 LNDRHIFDGC-CKMEIQYAKSQELGVYFNDDNNRDFKDTSIPSRVRSDPSILGAPPVESV 258
Query: 362 GA 363
A
Sbjct: 259 PA 260
>gi|41055393|ref|NP_957393.1| heterogeneous nuclear ribonucleoprotein L [Danio rerio]
gi|28278846|gb|AAH45336.1| Zgc:55429 [Danio rerio]
gi|182890552|gb|AAI64693.1| Zgc:55429 protein [Danio rerio]
Length = 536
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + + + QA +EF D+N A ++Y
Sbjct: 39 PSLVVHVRGLIDGITEADLVEALQEFGTI--SYVVLMPKKRQALVEFEDMNGASNAVTY- 95
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
+++ + G+ Y+ YS Q+I + D NVLL+TI + S DVL+ +
Sbjct: 96 -ANNNQIYIAGRPSYINYSTSQKISRPTDSDDTRSVNNVLLLTIMNPIYPITS-DVLYTI 153
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 154 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 205
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 206 YAKPTRLNVFKNDQDTWDYTNPNL 229
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/353 (28%), Positives = 145/353 (41%), Gaps = 90/353 (25%)
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
L+V + G + D++ FG + + K QALV+F D AS+A
Sbjct: 41 LVVHVRGLIDGITEADLVE-ALQEFGTISYVVLMPKKR--QALVEFEDMNGASNA----- 92
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID--ASGQL 230
+TY+ + + Y+ PS I+ S ++
Sbjct: 93 -------------------VTYANNNQI---------------YIAGRPSYINYSTSQKI 118
Query: 231 SVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
S D +NVLL +I N Y +T DVL+ + + GPVQ+I +F KNG +QA++++
Sbjct: 119 SRPTDSDDTRSVNNVLLLTIMNPIYPITSDVLYTICNNCGPVQRIVIFRKNG-VQAMVEF 177
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQP 350
VQ+A AK +L G IY G C L I Y++ T L++ N+ + DYT P
Sbjct: 178 DSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYT---------NP 227
Query: 351 SILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPY- 409
++ GQ A N +N +Q P P Q A G PP S P G Y
Sbjct: 228 NLSGQD----ADADGN-WNNSQ---DPNANPNKRQRQPALLGDHPPEYGS-PQGGYGHYD 278
Query: 410 ----------------MPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPPRPDH 446
M P P+G G +P G Q+ HG PP PD+
Sbjct: 279 DTYGPPPPPPHYEGRRMGP---PIGRGR---GVPRYGGAQYGHG---PPPPDY 322
>gi|334313145|ref|XP_001365024.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Monodelphis
domestica]
Length = 538
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 71 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 126
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 127 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 183
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 184 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 235
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 236 EYARPTRLNVIRNDNDSWDYTKPYL 260
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 162 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 220
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 221 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 276
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 277 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 329
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 330 GSVVMVSGLHQLKM 343
>gi|417402541|gb|JAA48116.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 542
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENMDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ + M
Sbjct: 334 GSVVMVSGLHPLKM 347
>gi|395508191|ref|XP_003758397.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Sarcophilus harrisii]
Length = 500
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 33 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 88
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 89 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 145
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 146 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 197
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 198 EYARPTRLNVIRNDNDSWDYTKPYL 222
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 124 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 182
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 183 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 238
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 239 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 291
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 292 GSVVMVSGLHQLKM 305
>gi|116004021|ref|NP_001070368.1| heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
gi|115305250|gb|AAI23452.1| Heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
gi|296482596|tpg|DAA24711.1| TPA: heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
Length = 541
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 129
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 130 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 186
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 187 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 238
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 239 EYARPTRLNVIRNDNDSWDYTKPYL 263
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 165 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 223
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 224 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 279
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 280 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 332
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 333 GSVVMVSGLHQLKM 346
>gi|20149709|ref|NP_612403.2| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Homo
sapiens]
gi|62286941|sp|Q8WVV9.1|HNRLL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein L-like;
Short=hnRNPLL; AltName: Full=Stromal RNA-regulating
factor
gi|17028350|gb|AAH17480.1| Heterogeneous nuclear ribonucleoprotein L-like [Homo sapiens]
gi|62988915|gb|AAY24302.1| unknown [Homo sapiens]
gi|158256360|dbj|BAF84151.1| unnamed protein product [Homo sapiens]
gi|380784945|gb|AFE64348.1| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Macaca
mulatta]
gi|383409735|gb|AFH28081.1| heterogeneous nuclear ribonucleoprotein L-like isoform 1 [Macaca
mulatta]
gi|410214350|gb|JAA04394.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410253266|gb|JAA14600.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410289230|gb|JAA23215.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410329931|gb|JAA33912.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
Length = 542
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>gi|359321615|ref|XP_003639639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Canis
lupus familiaris]
Length = 545
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 78 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 133
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 134 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 190
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 191 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 242
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 243 EYARPTRLNVIRNDNDSWDYTKPYL 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 169 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 227
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 228 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 283
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 284 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 336
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 337 GSVVMVSGLHQLKM 350
>gi|390474560|ref|XP_002757889.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Callithrix jacchus]
Length = 543
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 131
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 132 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 188
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 189 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 240
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 241 EYARPTRLNVIRNDNDSWDYTKPYL 265
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 167 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 225
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 226 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 281
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 282 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 334
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 335 GSVVMVSGLHQLKM 348
>gi|343961675|dbj|BAK62427.1| heterogeneous nuclear ribonucleoprotein L-like protein [Pan
troglodytes]
Length = 513
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 28/185 (15%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P S +L P+P
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRGSHGPLL---PLP--- 272
Query: 363 ATANQYN-GAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGM 421
++Y G++ P P+ P AS S GN P GS+ M G+
Sbjct: 273 ---SRYRMGSRDTPELVAYPL------------PQASSSYMHGGN----PSGSVVMVSGL 313
Query: 422 MQMHM 426
Q+ M
Sbjct: 314 HQLKM 318
>gi|348522989|ref|XP_003449006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oreochromis niloticus]
Length = 492
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + V N+ QA +E+ D+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEADLVEALQEFGAI--SYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD--VAGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSQKISRPGDSDDSRTVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 203 YAKPTRLNVFKNDQDTWDYTNPNL 226
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E+M + +TY+A + Y+ P+ I+ S + G +
Sbjct: 81 EDMNGSSTAVTYAADNQV---------------YIAGHPAFINYSTSQKISRPGDSDDSR 125
Query: 243 S--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+ NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK
Sbjct: 126 TVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
+L G IY G C L I Y++ T L++ N+ + DYT P+
Sbjct: 185 ASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPN 225
>gi|224046933|ref|XP_002199365.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Taeniopygia guttata]
Length = 546
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF ++ A +++
Sbjct: 79 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENVESAKKCVTF 134
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 135 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 191
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 192 VCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADI-------YAGCCTLKI 243
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 244 EYARPTRLNVIRNDNDSWDYTKPYL 268
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 170 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAA 228
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 229 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 284
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 285 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 337
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 338 GSVVMVSGLHQLKM 351
>gi|217416379|ref|NP_001136122.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Homo
sapiens]
gi|25988649|gb|AAN76189.1| BLOCK24 variant [Homo sapiens]
gi|67005958|gb|AAQ20084.2| stromal RNA regulating factor [Homo sapiens]
gi|383409737|gb|AFH28082.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Macaca
mulatta]
gi|384950354|gb|AFI38782.1| heterogeneous nuclear ribonucleoprotein L-like isoform 2 [Macaca
mulatta]
gi|410214348|gb|JAA04393.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
gi|410289228|gb|JAA23214.1| heterogeneous nuclear ribonucleoprotein L-like [Pan troglodytes]
Length = 537
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 275
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 276 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 328
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 329 GSVVMVSGLHQLKM 342
>gi|52545658|emb|CAH56358.1| hypothetical protein [Homo sapiens]
Length = 216
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 9 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 64
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 65 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 121
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 122 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 173
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 174 EYARPTRLNVIRNDNDSWDYTKPYL 198
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 100 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 158
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 159 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 196
>gi|158257950|dbj|BAF84948.1| unnamed protein product [Homo sapiens]
Length = 537
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 275
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 276 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 328
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 329 GSVVMVSGLHQLKM 342
>gi|395846042|ref|XP_003795724.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Otolemur
garnettii]
Length = 536
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 69 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENVDSAKECVTF 124
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 125 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 181
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 182 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 233
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 234 EYARPTRLNVIRNDNDSWDYTKPYL 258
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 160 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 218
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 219 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 274
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 275 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 327
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 328 GSVVMVSGLHQLKM 341
>gi|344288860|ref|XP_003416164.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Loxodonta
africana]
Length = 489
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 22 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 77
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A +P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 78 AAD--DPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 134
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 135 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 186
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 187 EYARPTRLNVIRNDNDSWDYTKPYL 211
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 113 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 171
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 172 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 227
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 228 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 280
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 281 GSVVMVSGLHQLKM 294
>gi|363731463|ref|XP_414998.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Gallus
gallus]
Length = 514
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF + A +++
Sbjct: 47 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFEKVESAKKCVTF 102
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 103 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 159
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 160 VCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADI-------YAGCCTLKI 211
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 212 EYARPTRLNVIRNDNDSWDYTKPYL 236
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 138 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAA 196
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 197 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 252
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 253 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 305
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 306 GSVVMVSGLHQLKM 319
>gi|25988650|gb|AAN76190.1| BLOCK24 variant [Homo sapiens]
Length = 262
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 257
>gi|326915072|ref|XP_003203845.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Meleagris gallopavo]
Length = 489
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF + A +++
Sbjct: 22 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFEKVESAKKCVTF 77
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 78 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 134
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 135 VCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAALNGADI-------YAGCCTLKI 186
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 187 EYARPTRLNVIRNDNDSWDYTKPYL 211
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 113 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVFCAQKAKAA 171
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 172 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 227
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P G+ +P AS S GN P
Sbjct: 228 EHPSSFRHDGYGSHGPLLPL---PNRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 280
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 281 GSVVMVSGLHQLKM 294
>gi|432889398|ref|XP_004075257.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oryzias latipes]
Length = 526
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 15/215 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + V N+ QA +E+ D+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEADLVEALQEFGAI--SYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS ++I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSKKISRPGDSDDSRSVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG 228
Y+ T L+V + DYTNP L D +G
Sbjct: 203 YAKPTRLNVFKNDQDTWDYTNPNLGGPDGDADGNG 237
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 43/234 (18%)
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E+M + +TY+A + Y+ P+ I+ S + G +
Sbjct: 81 EDMNGSSTAVTYAADNQV---------------YIAGHPAFINYSTSKKISRPGDSDDSR 125
Query: 243 S--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
S NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK
Sbjct: 126 SVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP--------------STPMV 346
+L G IY G C L I Y++ T L++ N+ + DYT P S +
Sbjct: 185 ASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLGGPDGDADGNGSSAEDM 243
Query: 347 NS-------QPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA 393
N+ QP++LG P P G + Y+ + PP E M PT G G
Sbjct: 244 NANPNKRPRQPALLGDHP-PEYGGGYHGYD-ENYGSPPYEGRRM-GPTMRGRGG 294
>gi|12849891|dbj|BAB28521.1| unnamed protein product [Mus musculus]
Length = 588
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 121 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 176
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 177 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 233
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 234 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 285
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 286 EYARPTRLNVIRNDNDSWDYTKPYL 310
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 212 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 270
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 271 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 326
Query: 363 ATANQYNGAQFAP-----PPPEQPMMHQPTAAGWGAVP-PASQSMPMMGNHPYMPPGSMP 416
+ + + P P + M A P P + S M G P GS+
Sbjct: 327 DHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGS---PSGSVV 383
Query: 417 MGPGMMQMHM 426
M G+ Q+ M
Sbjct: 384 MVSGLHQLKM 393
>gi|74147193|dbj|BAE27500.1| unnamed protein product [Mus musculus]
Length = 670
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 203 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 258
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 259 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 315
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 316 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 367
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 368 EYARPTRLNVIRNDNDSWDYTKPYL 392
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 294 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 352
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 353 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 408
Query: 363 ATANQYNGAQFAP-----PPPEQPMMHQPTAAGWGAVP-PASQSMPMMGNHPYMPPGSMP 416
+ + + P P + M A P P + S M G P GS+
Sbjct: 409 DHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGS---PSGSVV 465
Query: 417 MGPGMMQMHM 426
M G+ Q+ M
Sbjct: 466 MVSGLHQLKM 475
>gi|31416927|gb|AAH08217.2| HNRPLL protein [Homo sapiens]
Length = 275
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 257
>gi|390341476|ref|XP_785931.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Strongylocentrotus purpuratus]
Length = 570
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY- 74
PS V+H+ NL ++ +L+E +PFG + + QA +EF ++ + + + +
Sbjct: 62 PSCVVHVSNLSENVSDADLVEALQPFGPISFVH---RIQKGQALVEFEEMKSSKSCVEFT 118
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
A V GK + YSN I+ A NVLL+T+ R ++ DV+H +
Sbjct: 119 QAHPDNIINVGGKPAFFDYSNSARIIRPGENDSEANNVLLMTVVRPKYR-ITTDVIHTIC 177
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
FG V +I F+K G QA+V+F ++A+ AK L I G CTL+I +
Sbjct: 178 KGFGNVLRIVIFKKN-GVQAMVEFDTVQSATHAKQNLHNCDIYS-------GCCTLKIDF 229
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVA 220
+ L+V + DYTNP L A
Sbjct: 230 ARPKTLTVYKNDGETYDYTNPGLNAA 255
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 221 PSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK 280
P+ D S + G+ +NVLL ++ +Y +T DV+H + FG V +I +F K
Sbjct: 132 PAFFDYSNSARIIRPGENDSEANNVLLMTVVRPKYRITTDVIHTICKGFGNVLRIVIFKK 191
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
N G+QA++++ VQ+A AK+ L IY G C L I ++R L++ N+ + DYT
Sbjct: 192 N-GVQAMVEFDTVQSATHAKQNLHNCDIY-SGCCTLKIDFARPKTLTVYKNDGETYDYTN 249
Query: 341 PSTPMVNSQPSILGQQPVP 359
P ++L P P
Sbjct: 250 PGLNAAAQGRALLDDPPEP 268
>gi|281350475|gb|EFB26059.1| hypothetical protein PANDA_013339 [Ailuropoda melanoleuca]
Length = 368
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 78 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 133
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 134 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 190
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 191 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 242
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 243 EYARPTRLNVIRNDNDSWDYTKPYL 267
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 169 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 227
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 228 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 283
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 284 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 336
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 337 GSVVMVSGLHQLKM 350
>gi|432889396|ref|XP_004075256.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oryzias latipes]
Length = 519
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + V N+ QA +E+ D+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEADLVEALQEFGAI--SYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS ++I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSKKISRPGDSDDSRSVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 203 YAKPTRLNVFKNDQDTWDYTNPNL 226
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E+M + +TY+A + Y+ P+ I+ S + G +
Sbjct: 81 EDMNGSSTAVTYAADNQV---------------YIAGHPAFINYSTSKKISRPGDSDDSR 125
Query: 243 S--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
S NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK
Sbjct: 126 SVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST---PMVNS-------QP 350
+L G IY G C L I Y++ T L++ N+ + DYT P+ +N+ QP
Sbjct: 185 ASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLGGPEDMNANPNKRPRQP 243
Query: 351 SILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA 393
++LG P P G + Y+ + PP E M PT G G
Sbjct: 244 ALLGDHP-PEYGGGYHGYD-ENYGSPPYEGRRM-GPTMRGRGG 283
>gi|443732513|gb|ELU17197.1| hypothetical protein CAPTEDRAFT_161728, partial [Capitella teleta]
Length = 546
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L E +L+ + FG + + +R QA +EF D+N A+ ++ Y
Sbjct: 36 PSPVVHVRGLSDSVAEPDLMSSLQNFGHIGYVM--ILHSRRQALVEFDDINNAMNLVQY- 92
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ + P V G+ + YS Q+I + N +L+ +++DV+H + S
Sbjct: 93 -AETAPVYVGGRIAHFNYSTSQKISRPPGNHEETPNKVLLFTIFNPKYPITVDVMHTIAS 151
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
G V +I F K G Q +V+F E A AK+AL+G I G CTL+I Y+
Sbjct: 152 NNGPVARIVIFRKN-GLQCMVEFETLEGAQRAKSALNGADI-------YSGCCTLKIEYA 203
Query: 196 AHTDLSVKFQSHRSRDYTNPYLP 218
T L+V DYT P P
Sbjct: 204 KPTRLNVSRNDSEMWDYTTPSGP 226
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G E + VLL +I N +Y +T+DV+H + S GPV +I +F KN GLQ ++++ ++
Sbjct: 120 GNHEETPNKVLLFTIFNPKYPITVDVMHTIASNNGPVARIVIFRKN-GLQCMVEFETLEG 178
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM--VNSQPSIL 353
A AK AL G IY G C L I Y++ T L++ N+ DYT PS P NS+ + L
Sbjct: 179 AQRAKSALNGADIY-SGCCTLKIEYAKPTRLNVSRNDSEMWDYTTPSGPKSDFNSKSAPL 237
Query: 354 GQQP 357
+P
Sbjct: 238 LAEP 241
>gi|405962643|gb|EKC28300.1| Heterogeneous nuclear ribonucleoprotein L [Crassostrea gigas]
Length = 551
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 19/206 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-GANRNQAFIEFADLNQAIAMISY 74
PS V+H+R L E +L + FG N C V ++QA IEF D++ A ++Y
Sbjct: 27 PSPVVHVRGLYDNIMERDLTRAVQQFG---NVSCVVLMPKKHQALIEFEDISGATNCVNY 83
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNN--KTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
S+ V G+ Y YS Q I K ++LL TI V++D++H
Sbjct: 84 --SNENQIFVAGQPAYFNYSTSQRIQRPGPKEENKQTNHILLFTILNPQYP-VTVDIMHT 140
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLR 191
+ S +G V +I F K+ G Q++V+F D E+A AK AL+G I C TL+
Sbjct: 141 ICSPYGQVVRIVIFRKS-GMQSMVEFDDVESAKRAKQALNGADI--------YSDCNTLK 191
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYL 217
I Y+ L+V S DYTNP L
Sbjct: 192 IEYAKTDKLNVFKNDQSSWDYTNPNL 217
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+++LL +I N QY VT+D++H + S +G V +I +F K+ G+Q+++++ DV++A AK+A
Sbjct: 119 NHILLFTILNPQYPVTVDIMHTICSPYGQVVRIVIFRKS-GMQSMVEFDDVESAKRAKQA 177
Query: 303 LEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY C L I Y++ L++ N+ S DYT P+
Sbjct: 178 LNGADIYSD--CNTLKIEYAKTDKLNVFKNDQSSWDYTNPN 216
>gi|188528957|ref|NP_001120904.1| heterogeneous nuclear ribonucleoprotein L-like [Xenopus (Silurana)
tropicalis]
gi|183986223|gb|AAI66362.1| hnrpll protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E FG + C V + QA +EF D+ + +++
Sbjct: 64 SPVVHVRGLCESVVEADLVEALTKFGPI----CYVMMMPFKRQALVEFEDIEFSKKCVAF 119
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
AS EP + G+ + YS + I D +G VLL++I+ +++DVL+
Sbjct: 120 AAS--EPVYIAGQQAFFNYSTSKRITRPANNEDPSGGNKVLLLSIQNP-LYPITVDVLYS 176
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F +A AK++L+G I G CTL+I
Sbjct: 177 VCNPVGKVERIVIFKRN-GIQAMVEFDSVHSAQKAKSSLNGADI-------YAGCCTLKI 228
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DY+ PYL
Sbjct: 229 EYARPTRLNVIRNDNDSWDYSKPYL 253
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 12/189 (6%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G V++I +F +N G+QA++++ V +A AK +
Sbjct: 155 NKVLLLSIQNPLYPITVDVLYSVCNPVGKVERIVIFKRN-GIQAMVEFDSVHSAQKAKSS 213
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DY S P ++ + G+Q ++G
Sbjct: 214 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDY---SKPYLSRRDRGKGRQRQAILG 269
Query: 363 A--TANQYNG-AQFAP--PPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPM 417
++ +Y+G P P P M A P S M P P GS+ M
Sbjct: 270 DHPSSYRYDGYGNHGPLLPLPNLYRMGSRDTPELVAYPLPQASSSYMHGGP--PVGSVAM 327
Query: 418 GPGMMQMHM 426
G+ Q M
Sbjct: 328 VSGLHQQKM 336
>gi|330789887|ref|XP_003283030.1| hypothetical protein DICPUDRAFT_85687 [Dictyostelium purpureum]
gi|325087102|gb|EGC40483.1| hypothetical protein DICPUDRAFT_85687 [Dictyostelium purpureum]
Length = 488
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 168/372 (45%), Gaps = 57/372 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H R LP TE +L L PFGK+ C + QA IE + + +I+
Sbjct: 40 PSPVVHCRGLPITITESDLHSLLSPFGKI-QAVCML--RMGQALIEMDSVQSSSNIIN-- 94
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA-----GNVLLVTIEGTDARLVSIDVL 130
S ++P + + + YS Q + N K + N++L TI ++ + L
Sbjct: 95 RSITKPFLLNNQKILFSYSKSQHLNNVKKNQPMVPGGSNQNIILCTILNP-FYPITTNTL 153
Query: 131 HLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
H + S +G V +I F+K +G QA V+F +A++AK L+G +I C L
Sbjct: 154 HTIMSPYGRVLRIVIFQKKSGLQAFVEFDSPYSANTAKETLNGYNIYTEC-------CKL 206
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNP-----YLPVAPSAID----ASGQLSVG-------L 234
+I ++ + L+VK ++ DYT P L +P + A+G G +
Sbjct: 207 QIEFARVSKLNVKQNDEKTADYTTPDFYSQQLIQSPQGMQMYHHAAGSNPFGASHGAGFI 266
Query: 235 DGKKLE--------------PES-NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 279
+G + PES N + S+ + + D L +F +G V KI M
Sbjct: 267 NGGGPQQYGGAPYMYPAVGNPESVNQPVISVSKIPEDIDTDKLFNLFCLYGNVIKIKMLH 326
Query: 280 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
+ G A++Q D A +A + L IY K++ +++H + V++++++DY+
Sbjct: 327 NSKG-SAMVQMGDSIQAEIAVQCLNHSFIYGQ---KINCYHTKHPFI---VDSEKTKDYS 379
Query: 340 LPS-TPMVNSQP 350
+ +NSQP
Sbjct: 380 KSTLNRFLNSQP 391
>gi|348538507|ref|XP_003456732.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Oreochromis
niloticus]
Length = 556
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMIS 73
PS V+H+R L E +LI+ + FG + C V + QA +EF+ + A +S
Sbjct: 85 PSPVVHVRGLCEAVVEADLIDALEKFGPI----CYVMMMPFKRQALVEFSAVESADRCVS 140
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVN--NKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
+ EP + G+ Y YS + I N + VLL++I+ ++ DVL+
Sbjct: 141 --CGAKEPVYIAGQQAYFNYSTSKRITRPTNADNPNSGNKVLLLSIQNP-LYPITTDVLY 197
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
V + G V +I F++ G QA+V+F + A AK AL+G I G CTL+
Sbjct: 198 TVCNPIGSVLRIVIFKRN-GIQAMVEFESVQCAQKAKAALNGADI-------YAGCCTLK 249
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYL 217
I Y+ T L+V + S DYT PYL
Sbjct: 250 IEYARPTRLNVIKNDNESWDYTKPYL 275
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T DVL+ V + G V +I +F +N G+QA++++ VQ A AK A
Sbjct: 177 NKVLLLSIQNPLYPITTDVLYTVCNPIGSVLRIVIFKRN-GIQAMVEFESVQCAQKAKAA 235
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 236 LNGADIY-AGCCTLKIEYARPTRLNVIKNDNESWDYTKP 273
>gi|37514843|gb|AAH12849.2| Hnrpll protein [Mus musculus]
Length = 594
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 127 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 182
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 183 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 239
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 240 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 291
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 292 EYARPTRLNVIRNDNDSWDYTKPYL 316
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 218 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 276
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 277 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 332
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S G+ P
Sbjct: 333 DHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGS----PS 385
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 386 GSVVMVSGLHQLKM 399
>gi|110347535|ref|NP_659051.3| heterogeneous nuclear ribonucleoprotein L-like [Mus musculus]
gi|62286942|sp|Q921F4.3|HNRLL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein L-like
Length = 591
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 179
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 180 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 236
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 288
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 289 EYARPTRLNVIRNDNDSWDYTKPYL 313
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S G+ P
Sbjct: 330 DHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGS----PS 382
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 383 GSVVMVSGLHQLKM 396
>gi|338714336|ref|XP_001918049.2| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Equus caballus]
Length = 543
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 131
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 132 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 188
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 189 VCNPVGKVQRIVIFKRN-GIQAMLTFESVLCAQKAKAALNGADI-------YAGCCTLKI 240
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 241 EYARPTRLNVIRNDNDSWDYTKPYL 265
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 167 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLTFESVLCAQKAKAA 225
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 226 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 281
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 282 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 334
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 335 GSVVMVSGLHQLKM 348
>gi|293347913|ref|XP_001063027.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Rattus
norvegicus]
gi|293359746|ref|XP_233805.5| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Rattus
norvegicus]
Length = 591
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 179
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 180 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 236
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 288
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 289 EYARPTRLNVIRNDNDSWDYTKPYL 313
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S G+ P
Sbjct: 330 DHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGS----PS 382
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 383 GSVVMVSGLHQLKM 396
>gi|291386909|ref|XP_002709957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oryctolagus cuniculus]
Length = 547
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 80 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 135
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 136 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 192
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 193 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 244
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 245 EYARPTRLNVIRNDNDSWDYTKPYL 269
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 171 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 229
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 230 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 285
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 286 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 338
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 339 GSVVMVSGLHQLKM 352
>gi|440907649|gb|ELR57769.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Bos
grunniens mutus]
Length = 541
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 129
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 130 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 186
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 187 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 238
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 239 EYARPTRLNVIRNDNDSWDYTKPYL 263
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 165 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 223
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 224 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 279
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 280 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 332
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 333 GSVVMVSGLHQLKM 346
>gi|119620776|gb|EAX00371.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
gi|119620777|gb|EAX00372.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_d [Homo
sapiens]
Length = 542
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>gi|397493589|ref|XP_003817686.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Pan paniscus]
Length = 539
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 127
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 128 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 184
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 185 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 236
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 237 EYARPTRLNVIRNDNDSWDYTKPYL 261
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 163 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 221
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 222 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 277
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 278 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 330
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 331 GSVVMVSGLHQLKM 344
>gi|332227246|ref|XP_003262804.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Nomascus leucogenys]
Length = 542
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>gi|410955434|ref|XP_003984358.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Felis catus]
Length = 544
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 77 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 132
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 133 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 189
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 190 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 241
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 242 EYARPTRLNVIRNDNDSWDYTKPYL 266
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 168 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 226
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 227 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 282
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 283 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 335
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 336 GSVVMVSGLHQLKM 349
>gi|109102683|ref|XP_001109932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Macaca mulatta]
Length = 542
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>gi|291386911|ref|XP_002709958.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oryctolagus cuniculus]
Length = 541
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 129
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 130 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 186
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 187 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 238
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 239 EYARPTRLNVIRNDNDSWDYTKPYL 263
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 165 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 223
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 224 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 279
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 280 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 332
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 333 GSVVMVSGLHQLKM 346
>gi|355565619|gb|EHH22048.1| hypothetical protein EGK_05237 [Macaca mulatta]
Length = 542
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>gi|426226432|ref|XP_004007347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Ovis
aries]
Length = 507
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 40 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 95
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 96 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 152
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 153 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 204
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 205 EYARPTRLNVIRNDNDSWDYTKPYL 229
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 131 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 189
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 190 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 245
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 246 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 298
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 299 GSVVMVSGLHQLKM 312
>gi|410035018|ref|XP_003949838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Pan
troglodytes]
Length = 513
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 28/185 (15%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P S +L P+P
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRGSHGPLL---PLP--- 272
Query: 363 ATANQYN-GAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGM 421
++Y G++ P P+ P AS S GN P GS+ M G+
Sbjct: 273 ---SRYRMGSRDTPELVAYPL------------PQASSSYMHGGN----PSGSVVMVSGL 313
Query: 422 MQMHM 426
Q+ M
Sbjct: 314 HQLKM 318
>gi|410035016|ref|XP_001168474.3| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 4
[Pan troglodytes]
gi|426335280|ref|XP_004029156.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Gorilla
gorilla gorilla]
gi|119620773|gb|EAX00368.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_a [Homo
sapiens]
Length = 537
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 275
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 276 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 328
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 329 GSVVMVSGLHQLKM 342
>gi|109102685|ref|XP_001109971.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Macaca mulatta]
Length = 537
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 70 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 125
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 126 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 182
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 183 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 234
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 235 EYARPTRLNVIRNDNDSWDYTKPYL 259
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 219
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 220 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 275
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 276 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 328
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 329 GSVVMVSGLHQLKM 342
>gi|321459460|gb|EFX70513.1| hypothetical protein DAPPUDRAFT_328086 [Daphnia pulex]
Length = 439
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 7/121 (5%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PE+++LL +I N Y +T+DVLH + AFG V +I +F K+ G+QA++++ +V A AK
Sbjct: 14 PENHILLFTIVNPVYPITVDVLHTITQAFGEVLRIVIFKKH-GVQAMVEFANVDMARAAK 72
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
E L+G IY G C L I Y++ T L++ N+ + DYT P TP +SQ Q+P P+
Sbjct: 73 EGLDGADIYS-GCCTLKIEYAKPTRLNVHKNDSETWDYTTP-TPGADSQR----QRPAPL 126
Query: 361 V 361
+
Sbjct: 127 L 127
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + AFG V +I F+K G QA+V+F++ + A +AK LDG I
Sbjct: 30 ITVDVLHTITQAFGEVLRIVIFKK-HGVQAMVEFANVDMARAAKEGLDGADI-------Y 81
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
G CTL+I Y+ T L+V + DYT P
Sbjct: 82 SGCCTLKIEYAKPTRLNVHKNDSETWDYTTP 112
>gi|432889400|ref|XP_004075258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Oryzias latipes]
Length = 490
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 15/204 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L+E + FG + + V N+ QA +E+ D+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEADLVEALQEFGAI--SYVVVMPNKRQALVEYEDMNGSSTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS ++I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSKKISRPGDSDDSRSVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 203 YAKPTRLNVFKNDQDTWDYTNPNL 226
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 19/162 (11%)
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
E+M + +TY+A + Y+ P+ I+ S + G +
Sbjct: 81 EDMNGSSTAVTYAADNQV---------------YIAGHPAFINYSTSKKISRPGDSDDSR 125
Query: 243 S--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
S NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK
Sbjct: 126 SVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
+L G IY G C L I Y++ T L++ N+ + DYT P+
Sbjct: 185 ASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPN 225
>gi|297307105|ref|NP_001167465.1| heterogeneous nuclear ribonucleoprotein L [Xenopus laevis]
gi|50416457|gb|AAH77493.1| Unknown (protein for MGC:82601) [Xenopus laevis]
Length = 538
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 16/204 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+R L E +L E + FG + + V + QA +EF D+N A ++Y A
Sbjct: 50 SPVVHVRGLIDGVVETDLAEALQEFGAI--SYVVVMPKKRQALVEFEDINGACNAVNYAA 107
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA---GNVLLVTIEGTDARLVSIDVLHLV 133
+ V G ++ YS Q+I TAD + NVLL+TI ++ DVL+ +
Sbjct: 108 DNQ--IYVAGHPAFVNYSTSQKISRPTDTADDSRGVNNVLLLTIL-NPIYSITTDVLYTI 164
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 165 CNPCGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIE 216
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ + L+V + DYTNP L
Sbjct: 217 YAKPSRLNVFKNDQDTWDYTNPGL 240
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y++T DVL+ + + GPV++I +F KN G+QA++++ VQ+A AK +
Sbjct: 142 NNVLLLTILNPIYSITTDVLYTICNPCGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKAS 200
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP----------MVNSQPSI 352
L G IY G C L I Y++ + L++ N+ + DYT P P +
Sbjct: 201 LNGADIYS-GCCTLKIEYAKPSRLNVFKNDQDTWDYTNPGLSGQGDAAGNPNKRQRNPPL 259
Query: 353 LGQQPVPMVGATA---NQYNGAQFAPPPP 378
LG P G A Y+ + PPPP
Sbjct: 260 LGDHPAEYGGPHAGYHGHYHEEAYGPPPP 288
>gi|348574608|ref|XP_003473082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Cavia
porcellus]
Length = 541
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 74 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 129
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 130 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 186
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+ F A AK AL+G I G CTL+I
Sbjct: 187 VCNPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAALNGADI-------YAGCCTLKI 238
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 239 EYARPTRLNVIRNDNDSWDYTKPYL 263
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+ + V A AK A
Sbjct: 165 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAA 223
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 224 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 279
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 280 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 332
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 333 GSVVMVSGLHQLKM 346
>gi|26330256|dbj|BAC28858.1| unnamed protein product [Mus musculus]
Length = 326
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 179
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 180 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 236
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 288
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 289 EYARPTRLNVIRNDNDSWDYTKPYL 313
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 311
>gi|335308902|ref|XP_003361415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Sus
scrofa]
Length = 552
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 86 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 141
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 142 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 198
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA++ F A AK AL+G I G CTL+I
Sbjct: 199 VCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALNGADI-------YAGCCTLKI 250
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 251 EYARPTRLNVIRNDNDSWDYTKPYL 275
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 177 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 235
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 236 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 291
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 292 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 344
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 345 GSVVMVSGLHQLKM 358
>gi|4929470|gb|AAD34009.1|AF148690_1 RNA-binding protein XlhnRNPL [Xenopus laevis]
Length = 273
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 16/204 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+R L E +L E + FG + + V + QA +EF D+N A ++Y A
Sbjct: 50 SPVVHVRGLIDGVVEPDLAEALQEFGTI--SYVVVMPKKRQALVEFEDINGACNAVNYAA 107
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA---GNVLLVTIEGTDARLVSIDVLHLV 133
+ V G ++ YS Q+I TAD + NVLL+TI ++ DVL+ +
Sbjct: 108 DNQ--IYVAGHPAFVNYSTSQKISRPTDTADDSRGVNNVLLLTILNP-IYSITTDVLYTI 164
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 165 CNPCGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIE 216
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ + L+V + DYTNP L
Sbjct: 217 YAKPSRLNVFKNDQDTWDYTNPCL 240
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y++T DVL+ + + GPV++I +F KN G+QA++++ VQ+A AK +
Sbjct: 142 NNVLLLTILNPIYSITTDVLYTICNPCGPVERIVIFRKN-GVQAMVEFDSVQSAQRAKAS 200
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG-----QQP 357
L G IY G C L I Y++ + L++ N+ + DYT P ++ Q + G Q+
Sbjct: 201 LNGADIYS-GCCTLKIEYAKPSRLNVFKNDQDTWDYT---NPCLSGQGDLGGNPNKRQRN 256
Query: 358 VPMVGATANQYNG 370
P++G +Y G
Sbjct: 257 PPLLGDHPAEYGG 269
>gi|410910584|ref|XP_003968770.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Takifugu rubripes]
Length = 514
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 16/214 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L + K FG++ + + + QA +E+AD+N + +++
Sbjct: 36 PSVVVHVRGLVDGXTEGDLCDALKEFGEI--SYVVLMPKKRQALVEYADMNGSFTAVTFA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSQKISRPGDSDDSRSVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 202
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
Y+ T L+V + DYTNP L P ++A+
Sbjct: 203 YAKPTRLNVFKNDQETWDYTNPNLG-GPEDVNAN 235
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ I+ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 99 YIAGHPAFINYSTSQKISRPGDSDDSRSVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQ 158
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 159 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 216
Query: 334 RSRDYTLPST---PMVNS-------QPSILGQQPVPMVGATANQYN------GAQFAPP 376
+ DYT P+ VN+ QP++LG P P G + Y+ G + PP
Sbjct: 217 ETWDYTNPNLGGPEDVNANPNKRQRQPALLGDHP-PEYGGGYHGYDENYGYEGRRMGPP 274
>gi|351715514|gb|EHB18433.1| Heterogeneous nuclear ribonucleoprotein L-like protein, partial
[Heterocephalus glaber]
Length = 479
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L++ + FG + C V + QA +EF +++ A +++
Sbjct: 12 SPVVHVRGLCESVVEADLVDALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 67
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 68 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 124
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+ F A AK AL+G I G CTL+I
Sbjct: 125 VCNPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAALNGADI-------YAGCCTLKI 176
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 177 EYARPTRLNVIRNDNDSWDYTKPYL 201
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+ + V A AK A
Sbjct: 103 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMFMFESVLCAQKAKAA 161
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 162 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 217
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 218 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 270
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 271 GSVVMVSGLHQLKM 284
>gi|348524683|ref|XP_003449852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Oreochromis niloticus]
Length = 518
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ I+ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 102 YIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTIINPIYPITTDVLYTICNNCGPVQ 161
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ L++ N+
Sbjct: 162 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPARLNVFKNDQ 219
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMVGATA--NQYNGAQFAPPPP 378
+ DYT P+ P N QP++LG P G + YN + PPPP
Sbjct: 220 DTWDYTNPNLSGQGDPNANPNKRQRQPALLGDHPPDYGGPQGGYHGYNDDSYGPPPP 276
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 15/204 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L E +L+E + FG + + + + QA +E+ D+N + ++Y
Sbjct: 39 PSPVVHIRGLVDGVMEADLVEALQEFGTI--SFVVMMPKKRQALVEYEDMNGSCNAVTYA 96
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL+TI ++ DVL+ +
Sbjct: 97 AENQ--VYIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTIINP-IYPITTDVLYTI 153
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 154 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 205
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ L+V + DYTNP L
Sbjct: 206 YAKPARLNVFKNDQDTWDYTNPNL 229
>gi|358332176|dbj|GAA36554.2| polypyrimidine tract-binding protein 1 [Clonorchis sinensis]
Length = 543
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + E E+ L PFG + N + NQA IE L A+ +++YY
Sbjct: 8 PSRVIHVRNMPSDVNENEIALLAIPFGLIKNMV--LSKKNNQALIEMEVLEDAMQLVTYY 65
Query: 76 ASSSEPAQVRGKTVYLQYS-------------------NRQEIVNNKTTADVAG---NVL 113
P + GK + LQ+S N IV + AG +VL
Sbjct: 66 CKY--PVMLHGKNIILQFSTHTHLELTTENNAIENAVKNANRIVQQDLSGVQAGAPNSVL 123
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+ I+ + ++ +L+ +F FG + ++ F ++ +Q +++F + A A L+G
Sbjct: 124 RIVIDNIMGQQINHVILYKIFHRFGKILRVLIFLRSNQYQCMLEFQNHIQAFVAMLHLNG 183
Query: 174 RSIPRYLLPENMGPCTLRITYS-AHTDLSVKFQSHRSRDYT 213
++I G C+LR+ +S L V+ ++ + RDYT
Sbjct: 184 QNI-------YTGCCSLRVEFSRTRGPLEVRRENDKCRDYT 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 199 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAV 257
++ ++F +H + T + + +A+ + L G + ++VL I+N M +
Sbjct: 76 NIILQFSTHTHLELTTENNAIENAVKNANRIVQQDLSGVQAGAPNSVLRIVIDNIMGQQI 135
Query: 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317
+L+ +F FG + ++ +F ++ Q ++++ + A VA L G IY G C L
Sbjct: 136 NHVILYKIFHRFGKILRVLIFLRSNQYQCMLEFQNHIQAFVAMLHLNGQNIYTGC-CSLR 194
Query: 318 ISYSRHTD-LSIKVNNDRSRDYTLPSTPM----VNSQPSILGQQPVPMVGATANQYNGAQ 372
+ +SR L ++ ND+ RDYT+ +P+ +NS P PV + ATAN
Sbjct: 195 VEFSRTRGPLEVRRENDKCRDYTV--SPLLEDELNSPPP--ANVPVNQLAATAN------ 244
Query: 373 FAPPPPEQ------PMMHQPTAAGWGAVPPASQ 399
F P Q PM + P GAVP ++
Sbjct: 245 FQPNMIGQNLAVVNPMTNIPGMGTAGAVPGITE 277
>gi|327287724|ref|XP_003228578.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Anolis
carolinensis]
Length = 553
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 101/203 (49%), Gaps = 15/203 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+R L E +L+E + FG + + V + QA +EF D+ A + ++Y A
Sbjct: 65 SPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDMLGACSAVNYAA 122
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHLVF 134
+ + G ++ YS Q+I + D G NVLL TI ++ DVL+ +
Sbjct: 123 DNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRGVNNVLLFTILNP-IYSITTDVLYTIC 179
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I Y
Sbjct: 180 NPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKIEY 231
Query: 195 SAHTDLSVKFQSHRSRDYTNPYL 217
+ T L+V + DYTNP L
Sbjct: 232 AKPTRLNVFKNDQDTWDYTNPNL 254
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y++T DVL+ + + GPVQ+I +F KNG +QA++++ VQ+A AK +
Sbjct: 156 NNVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNG-VQAMVEFDSVQSAQRAKAS 214
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y++ T L++ N+ + DYT P++ GQ G
Sbjct: 215 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYT---------NPNLSGQ------G 258
Query: 363 ATANQYNGAQFAPP-----PPEQPMMHQPTAA-----GWGAVPPASQSMPMMGNHPYMPP 412
N Q PP P E H G+G PP + M
Sbjct: 259 EPGGNPNKRQRQPPLLGDHPAEYGGPHGGYHGHYHDEGYGPPPPHYEGRRM--------- 309
Query: 413 GSMPMGPGMMQMHM-PGQSGMQHHHGAMPP 441
GP + H PG+ G Q+ H PP
Sbjct: 310 -----GPPVGGRHRGPGRYGPQYGHPPPPP 334
>gi|47208707|emb|CAF90432.1| unnamed protein product [Tetraodon nigroviridis]
Length = 499
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMIS 73
PS V+H+R L E +LI+ + FG + C V + QA +EF++L A +S
Sbjct: 11 PSPVVHVRGLCEAVVEADLIDALEKFGTI----CYVMMMPFKRQALVEFSELQSADRCVS 66
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVN--NKTTADVAGNVLLVTIEG---------TDA 122
+ EP + G+ Y YS + I N + VLL++I+ T A
Sbjct: 67 --CGAKEPVYIAGQQAYFNYSTSKRITRPTNADNPNSGNKVLLLSIQNPLYPITTVTTAA 124
Query: 123 R---------LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
R ++ DVL+ V + G V +I F++ G QA+V+F A AK AL+G
Sbjct: 125 RPGACWRSDCGLTQDVLYTVCNPVGNVLRIVIFKRN-GIQAMVEFESVHCAQKAKAALNG 183
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 184 ADI-------YAGCCTLKIEYARPTRLNVIKNDNESWDYTKPYL 220
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 256 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315
+T DVL+ V + G V +I +F +NG +QA++++ V A AK AL G IY G C
Sbjct: 135 GLTQDVLYTVCNPVGNVLRIVIFKRNG-IQAMVEFESVHCAQKAKAALNGADIY-AGCCT 192
Query: 316 LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS-----QPSILGQQP 357
L I Y+R T L++ N++ S DYT P + + +ILG+ P
Sbjct: 193 LKIEYARPTRLNVIKNDNESWDYTKPYLVRRDRGKGRQRQAILGEHP 239
>gi|348524681|ref|XP_003449851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Oreochromis niloticus]
Length = 529
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 19/216 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L E +L+E + FG + + + + QA +E+ D+N + ++Y
Sbjct: 39 PSPVVHIRGLVDGVMEADLVEALQEFGTI--SFVVMMPKKRQALVEYEDMNGSCNAVTYA 96
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL+TI ++ DVL+ +
Sbjct: 97 AENQ--VYIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTIINP-IYPITTDVLYTI 153
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 154 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 205
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
Y+ L+V + DYTNP L S DA G+
Sbjct: 206 YAKPARLNVFKNDQDTWDYTNPNL----SGQDADGE 237
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 27/188 (14%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ I+ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 102 YIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTIINPIYPITTDVLYTICNNCGPVQ 161
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ L++ N+
Sbjct: 162 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPARLNVFKNDQ 219
Query: 334 RSRDYTLPS----------------TPMVN-----SQPSILGQQPVPMVGATA--NQYNG 370
+ DYT P+ P N QP++LG P G + YN
Sbjct: 220 DTWDYTNPNLSGQDADGEGNWNNSQDPNANPNKRQRQPALLGDHPPDYGGPQGGYHGYND 279
Query: 371 AQFAPPPP 378
+ PPPP
Sbjct: 280 DSYGPPPP 287
>gi|213510846|ref|NP_001133491.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
gi|209154218|gb|ACI33341.1| Heterogeneous nuclear ribonucleoprotein L-like [Salmo salar]
Length = 548
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQA 68
R Q P V+H+R L E +L+E + FG + C V + QA +EF + A
Sbjct: 76 RIAQSP--VVHVRGLCEAVVEADLVEALEKFGPI----CYVMMMPFKRQALVEFEMVESA 129
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN--NKTTADVAGNVLLVTIEGTDARLVS 126
++ SSE + G+ + YS + I N + VLL++I+ ++
Sbjct: 130 DKCVA--CGSSEAVYIAGQQAFFNYSTSKRITRPTNSDNPNSGNKVLLLSIQNP-LYPIT 186
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
DVL+ V + G V +I F++ G QA+V+F E A AK AL+G I G
Sbjct: 187 TDVLYTVCNPIGSVMRIVIFKRN-GIQAMVEFESIECAQKAKAALNGADI-------YAG 238
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
CTL+I Y+ T L+V + S DYT PYL
Sbjct: 239 CCTLKIEYARPTRLNVIRNDNESWDYTKPYL 269
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T DVL+ V + G V +I +F +N G+QA++++ ++ A AK A
Sbjct: 171 NKVLLLSIQNPLYPITTDVLYTVCNPIGSVMRIVIFKRN-GIQAMVEFESIECAQKAKAA 229
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + G+Q ++G
Sbjct: 230 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNESWDYTKPYLVRRDVSERGKGRQRQAILG 288
Query: 363 ATANQYNGAQFAPPPPEQPM 382
+ Y + P P+
Sbjct: 289 EHPSSYGDNGYGSHCPLLPL 308
>gi|268530642|ref|XP_002630447.1| Hypothetical protein CBG11180 [Caenorhabditis briggsae]
Length = 604
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 12/198 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C + A +EF +L+ A A ++Y
Sbjct: 32 PSIVVHVRNLHQKVTEADLLEALSTFGPIAYATCI--PHSRMALVEFENLDGAKACVNYA 89
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
A+++ V G+ YS Q I VL+VT+ + DV+H + S
Sbjct: 90 ATNN--VTVGGQAALFNYSTSQCIERMGFEGSTPNKVLVVTVLNA-TYPIDADVIHTISS 146
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
+ G V ++ K QALV+F E A +AK+A++G I G CTL++ ++
Sbjct: 147 SQGKVLRVAVMHKPTVVQALVEFESVEVAKAAKHAMNGADI-------YAGCCTLKVEFA 199
Query: 196 AHTDLSVKFQSHRSRDYT 213
+ V Q RD+T
Sbjct: 200 KPDRVRVTRQDKDQRDFT 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N Y + DV+H + S+ G V ++A+ K +QAL+++ V+ A AK A
Sbjct: 122 NKVLVVTVLNATYPIDADVIHTISSSQGKVLRVAVMHKPTVVQALVEFESVEVAKAAKHA 181
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
+ G IY G C L + +++ + + + RD+TL
Sbjct: 182 MNGADIY-AGCCTLKVEFAKPDRVRVTRQDKDQRDFTL 218
>gi|432895625|ref|XP_004076081.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Oryzias
latipes]
Length = 529
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L E +L++ + FG + + + + QA +E+ D+N + +++
Sbjct: 39 PSPVVHIRGLVDGVMEADLVDALQEFGAI--SYVVMMPKKRQALVEYEDVNASCNAVTFA 96
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL+TI ++ DVL+ +
Sbjct: 97 AENQ--VYIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTILNP-IYPITTDVLYTI 153
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 154 CNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKIE 205
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
Y+ T L+V + DYTNP L S+ DA G+
Sbjct: 206 YAKPTRLNVFKNDQDTWDYTNPNL----SSQDADGE 237
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ I+ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 102 YIAGHPAFINYSTSQKISRPGDSDDTRSVNNVLLLTILNPIYPITTDVLYTICNNCGPVQ 161
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 162 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 219
Query: 334 RSRDYTLPS----------------TPMVN-----SQPSILGQQPVPMVG--ATANQYNG 370
+ DYT P+ P N QP++LG P G + + YN
Sbjct: 220 DTWDYTNPNLSSQDADGEGNWNNSQDPNANPNKRQRQPALLGDHPPDYGGPQGSYHAYND 279
Query: 371 AQFAPPPPEQ 380
+ PPPP +
Sbjct: 280 DAYGPPPPHR 289
>gi|307694571|gb|ADN84938.1| hephaestus [Biston betularia]
Length = 181
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 47/177 (26%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P E TE E+I+LG PFG+V N G +NQAF+E A+ A+AM++Y+
Sbjct: 10 PSRVIHIRNIPNETTEAEIIQLGLPFGRVTNVLVLKG--KNQAFLEMAEEISAVAMVAYF 67
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT------------------------------- 104
AQ+RG+ VY+Q+SN +E+ ++T
Sbjct: 68 GGCV--AQLRGRAVYVQFSNHKELKTDQTHSNASASAQAALQAAQAISNSAGAALVAGAG 125
Query: 105 --------TADVAG---NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTA 150
++ G VL V IE +V +DVL+ +F +G V KI TF K +
Sbjct: 126 AALQPANGGTEIQGGPNTVLRVIIEHMLYPIV-LDVLYSIFQRYGKVLKIVTFTKNS 181
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
+ VL IE+M Y + LDVL+ +F +G V KI F KN
Sbjct: 142 NTVLRVIIEHMLYPIVLDVLYSIFQRYGKVLKIVTFTKN 180
>gi|158254346|gb|AAI54329.1| Hnrnpl protein [Danio rerio]
Length = 522
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 12 YTQP----PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQ 67
YT P PS V+H+R L E +++E + FG + + + + QA +E+ D+N
Sbjct: 32 YTDPHKTLPSLVVHVRGLVDGVLESDIVEALQEFGTI--SYVVLMPKKRQALVEYEDMNG 89
Query: 68 AIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN--NKTTADVAGNVLLVTIEGTDARLV 125
+ ++Y ++ + G ++ YS Q+I + A NVLL+TI +
Sbjct: 90 SCNAVTY--ANDNQIYIAGHPAFVNYSTSQKISRPGDPDDARSVNNVLLLTIMNPIYPIT 147
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
S DVL+ + + G V +I F K G QA+V+F ++A AK +L+G I
Sbjct: 148 S-DVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS------- 198
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G CTL+I Y+ T L+V + DYTNP L
Sbjct: 199 GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPSL 230
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 132 NNVLLLTIMNPIYPITSDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 190
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS--TPMVNSQPSILGQQPVPM 360
L G IY G C L I Y++ T L++ N+ + DYT PS T +N+ P+ +QP +
Sbjct: 191 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPSLGTQDMNANPNKRQRQPA-L 248
Query: 361 VGATANQYNG 370
+G +Y G
Sbjct: 249 LGDHPPEYGG 258
>gi|126329101|ref|XP_001362792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Monodelphis
domestica]
Length = 607
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 117 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDILGACNAVNY 174
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I T D +VLL TI ++ DVL+
Sbjct: 175 AADNQ--IYIAGHPAFVNYSTSQKISRPGDTDDSRSVNSVLLFTIL-NPIYSITTDVLYT 231
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 232 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 283
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 284 EYAKPTRLNVFKNDQDTWDYTNPNL 308
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 181 YIAGHPAFVNYSTSQKISRPGDTDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 240
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 241 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 298
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 299 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 356
>gi|358338430|dbj|GAA56814.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 873
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 23/232 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+ LP E L+ + +G + + + R QA IEFAD++ A + +
Sbjct: 347 PSPVIHISELPEHTLEIFLLRTFEQYGPIKDV--TMMPQRGQALIEFADISSAESAV--V 402
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD---------VAGNVLLVTIEGTDARLVS 126
S P + V + YS + IV + + + VLL TI ++
Sbjct: 403 RCSEIPLTIANHRVRVNYSTSKRIVQRQLGGESGRDYSDGPLESRVLLFTIYNAQYP-IT 461
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
+DV+H + S G V +I F KT QA+V+F +T+ A +AK L+G I G
Sbjct: 462 VDVIHQITSRHGRVLRIVIFRKTH-VQAMVEFKNTDDARNAKRNLNGADI-------YSG 513
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS-GQLSVGLDGK 237
CTL+I ++ L+V + DY N LP P+ I S G+ +V L G+
Sbjct: 514 CCTLKIEFARPARLTVLKNDQETWDYENSLLPTDPARIRISDGRANVSLLGR 565
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 39/215 (18%)
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
F +G + +T + QAL++F+D +A SA +P + +R+
Sbjct: 369 FEQYGPIKDVTMMPQRG--QALIEFADISSAESAVVRCSE-------IPLTIANHRVRVN 419
Query: 194 YSAHTDLSVK-FQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
YS + + RDY++ L ES VLL +I N
Sbjct: 420 YSTSKRIVQRQLGGESGRDYSDGPL------------------------ESRVLLFTIYN 455
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
QY +T+DV+H + S G V +I +F K +QA++++ + A AK L G IY G
Sbjct: 456 AQYPITVDVIHQITSRHGRVLRIVIFRKT-HVQAMVEFKNTDDARNAKRNLNGADIY-SG 513
Query: 313 FCKLHISYSRHTDLSIKVNNDRSRDYT---LPSTP 344
C L I ++R L++ N+ + DY LP+ P
Sbjct: 514 CCTLKIEFARPARLTVLKNDQETWDYENSLLPTDP 548
>gi|395522271|ref|XP_003765161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Sarcophilus
harrisii]
Length = 510
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 20 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDILGACNAVNY 77
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I T D +VLL TI ++ DVL+
Sbjct: 78 AADNQ--IYIAGHPAFVNYSTSQKISRPGDTDDSRSVNSVLLFTILNP-IYSITTDVLYT 134
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 135 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 186
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 187 EYAKPTRLNVFKNDQDTWDYTNPNL 211
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 84 YIAGHPAFVNYSTSQKISRPGDTDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 143
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 144 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 201
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 202 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 259
>gi|432114048|gb|ELK36095.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Myotis
davidii]
Length = 628
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 24/210 (11%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 172 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 227
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 228 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 284
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQ-----FSDTETASSAKNALDGRSIPRYLLPENMGP 187
V + G V +I F++ G QA++ F A AK AL+G I G
Sbjct: 285 VCNPVGKVQRIVIFKRN-GIQAMISLIELMFESVLCAQKAKAALNGADI-------YAGC 336
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
CTL+I Y+ T L+V + S DYT PYL
Sbjct: 337 CTLKIEYARPTRLNVIRNDNDSWDYTKPYL 366
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 27/199 (13%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ-----YPDVQTAV 297
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+I + V A
Sbjct: 263 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMISLIELMFESVLCAQ 321
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 357
AK AL G IY G C L I Y+R T L++ N++ S DYT P + + G+Q
Sbjct: 322 KAKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQR 377
Query: 358 VPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNH 407
++G + + + P P+ P+ G+ +P AS S GN
Sbjct: 378 QAILGEHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN- 433
Query: 408 PYMPPGSMPMGPGMMQMHM 426
P GS+ M G+ + M
Sbjct: 434 ---PSGSVVMVSGLHPLKM 449
>gi|52632385|ref|NP_001005335.1| heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens]
gi|332855272|ref|XP_001167265.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 4 [Pan
troglodytes]
gi|397482177|ref|XP_003812309.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Pan paniscus]
gi|403305233|ref|XP_003943172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Saimiri
boliviensis boliviensis]
gi|158257662|dbj|BAF84804.1| unnamed protein product [Homo sapiens]
Length = 456
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 30 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 89
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 90 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 147
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 148 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 205
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNV 112
+ QA +EF D+ A ++Y A + + G ++ YS Q+I + D +V
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSV 61
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL TI ++ DVL+ + + G V +I F K G QA+V+F ++A AK +L+
Sbjct: 62 LLFTIL-NPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLN 119
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 120 GADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 157
>gi|149056441|gb|EDM07872.1| rCG53531, isoform CRA_b [Rattus norvegicus]
Length = 456
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 30 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 89
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 90 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 147
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 148 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 205
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNV 112
+ QA +EF D+ A ++Y A + + G ++ YS Q+I + D +V
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSV 61
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL TI ++ DVL+ + + G V +I F K G QA+V+F ++A AK +L+
Sbjct: 62 LLFTILNP-IYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLN 119
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 120 GADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 157
>gi|380799767|gb|AFE71759.1| heterogeneous nuclear ribonucleoprotein L isoform a, partial
[Macaca mulatta]
Length = 467
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 41 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 100
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 101 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 158
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 159 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 216
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNV 112
+ QA +EF D+ A ++Y A + + G ++ YS Q+I + D +V
Sbjct: 15 KRQALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSV 72
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL TI ++ DVL+ + + G V +I F K G QA+V+F ++A AK +L+
Sbjct: 73 LLFTIL-NPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLN 130
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 131 GADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 168
>gi|211828181|gb|AAH69184.2| HNRNPL protein [Homo sapiens]
Length = 572
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 146 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 205
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 206 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 263
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 264 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 321
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 82 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 139
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 140 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 196
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 197 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 248
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 249 EYAKPTRLNVFKNDQDTWDYTNPNL 273
>gi|426243770|ref|XP_004015721.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Ovis aries]
Length = 598
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 172 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 231
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 232 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 289
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 290 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 347
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 108 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 165
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 166 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 222
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 223 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 274
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 275 EYAKPTRLNVFKNDQDTWDYTNPNL 299
>gi|47087069|ref|NP_998548.1| heterogeneous nuclear ribonucleoprotein L2 [Danio rerio]
gi|32451940|gb|AAH54655.1| Heterogeneous nuclear ribonucleoprotein L [Danio rerio]
gi|182891832|gb|AAI65353.1| Hnrnpl protein [Danio rerio]
Length = 481
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 12 YTQP----PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQ 67
YT P PS V+H+R L E +++E + FG + + + + QA +E+ D+N
Sbjct: 32 YTDPHKTLPSLVVHVRGLVDGVLESDIVEALQEFGTI--SYVVLMPKKRQALVEYEDMNG 89
Query: 68 AIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVN--NKTTADVAGNVLLVTIEGTDARLV 125
+ ++Y ++ + G ++ YS Q+I + A NVLL+TI +
Sbjct: 90 SCNAVTY--ANDNQIYIAGHPAFVNYSTSQKISRPGDPDDARSVNNVLLLTIMNPIYPIT 147
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
S DVL+ + + G V +I F K G QA+V+F ++A AK +L+G I
Sbjct: 148 S-DVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS------- 198
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G CTL+I Y+ T L+V + DYTNP L
Sbjct: 199 GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPSL 230
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y +T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 132 NNVLLLTIMNPIYPITSDVLYTICNNCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 190
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I Y++ T L++ N+ + DYT PS
Sbjct: 191 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPS 229
>gi|354488933|ref|XP_003506620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cricetulus
griseus]
Length = 576
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 102 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 157
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 158 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 214
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQ-------FSDTETASSAKNALDGRSIPRYLLPENM 185
V + G V +I F++ G QA+V+ F A AK AL+G I
Sbjct: 215 VCNPVGKVQRIVIFKRN-GIQAMVEYPLFSFRFESVLCAQKAKAALNGADI-------YA 266
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 267 GCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 298
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 29/201 (14%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP-------DVQT 295
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+++YP V
Sbjct: 193 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEYPLFSFRFESVLC 251
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK AL G IY G C L I Y+R T L++ N++ S DYT P + + G+
Sbjct: 252 AQKAKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGR 307
Query: 356 QPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMG 405
Q ++G + + + P P+ P+ G+ +P AS S G
Sbjct: 308 QRQAILGDHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGG 364
Query: 406 NHPYMPPGSMPMGPGMMQMHM 426
+ P GS+ M G+ Q+ M
Sbjct: 365 S----PSGSVVMVSGLHQLKM 381
>gi|148692162|gb|EDL24109.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_b [Mus
musculus]
Length = 567
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 141 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 200
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 201 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 258
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 259 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 316
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 74 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 131
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 132 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 188
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 189 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 240
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 241 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 268
>gi|291390016|ref|XP_002711505.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Oryctolagus
cuniculus]
Length = 586
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 259
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 260 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
>gi|197245939|gb|AAI69048.1| Hnrnpl protein [Rattus norvegicus]
Length = 571
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 122/280 (43%), Gaps = 59/280 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G +V D++ FG + + K QALV+F D
Sbjct: 85 VVHIRGLIDGVVEADLVE-ALQEFGPISYVVVMPKKR--QALVEFEDV------------ 129
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+G C + Y+A + Y+ P+ ++ S +
Sbjct: 130 -----------LGACNA-VNYAADNQI---------------YIAGHPAFVNYSTSQKIS 162
Query: 234 LDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + S +VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++
Sbjct: 163 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFD 221
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS-----TPMV 346
VQ+A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ P
Sbjct: 222 SVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGS 280
Query: 347 N-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
N QP +LG P G + Y+ + PPPP
Sbjct: 281 NPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 320
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 81 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 138
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 139 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 195
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 196 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 247
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 248 EYAKPTRLNVFKNDQDTWDYTNPNL 272
>gi|20072624|gb|AAH27206.1| Heterogeneous nuclear ribonucleoprotein L [Mus musculus]
gi|148692161|gb|EDL24108.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_a [Mus
musculus]
gi|149056440|gb|EDM07871.1| rCG53531, isoform CRA_a [Rattus norvegicus]
Length = 555
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 129 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 188
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 189 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 246
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 247 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 304
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 65 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 122
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 123 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 179
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 180 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 231
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 232 EYAKPTRLNVFKNDQDTWDYTNPNL 256
>gi|189053899|dbj|BAG36406.1| unnamed protein product [Homo sapiens]
Length = 558
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 132 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 191
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 192 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 249
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 250 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 307
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 65 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 122
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 123 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 179
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 180 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 231
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 232 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 259
>gi|11527777|dbj|BAB18649.1| heterogeneous nuclear ribonucleoprotein L [Homo sapiens]
Length = 589
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 122/280 (43%), Gaps = 59/280 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G +V D++ FG + + K QALV+F D
Sbjct: 103 VVHIRGLIDGVVEADLVE-ALQEFGPISYVVVMPKKR--QALVEFEDV------------ 147
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+G C + Y+A + Y+ P+ ++ S +
Sbjct: 148 -----------LGACNA-VNYAADNQI---------------YIAGHPAFVNYSTSQKIS 180
Query: 234 LDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + S +VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++
Sbjct: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFD 239
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS-----TPMV 346
VQ+A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ P
Sbjct: 240 SVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGS 298
Query: 347 N-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
N QP +LG P G + Y+ + PPPP
Sbjct: 299 NPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>gi|32356|emb|CAA34261.1| unnamed protein product [Homo sapiens]
gi|226731|prf||1604358A nuclear RNP protein L
Length = 558
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 132 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 191
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 192 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 249
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 250 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 307
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 65 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 122
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 123 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 179
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 180 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 231
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 232 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 259
>gi|183980004|ref|NP_796275.3| heterogeneous nuclear ribonucleoprotein L [Mus musculus]
gi|197927209|ref|NP_116008.2| heterogeneous nuclear ribonucleoprotein L isoform b [Rattus
norvegicus]
gi|215273994|sp|Q8R081.2|HNRPL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein L;
Short=hnRNP L
gi|71119320|gb|AAH99683.1| Hnrpl protein [Mus musculus]
Length = 586
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 259
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 260 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
>gi|343959210|dbj|BAK63460.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 558
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 132 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 191
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 192 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 249
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 250 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 307
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 65 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 122
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 123 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 179
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 180 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 231
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 232 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 259
>gi|395859744|ref|XP_003802192.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Otolemur
garnettii]
Length = 557
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 131 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 190
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 191 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 248
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 249 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 306
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 67 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 124
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 125 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 181
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 182 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 233
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 234 EYAKPTRLNVFKNDQDTWDYTNPNL 258
>gi|348563003|ref|XP_003467298.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cavia
porcellus]
Length = 586
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 259
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 260 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
>gi|441652820|ref|XP_004093177.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L [Nomascus leucogenys]
Length = 590
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 164 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 223
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 224 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 281
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 282 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 339
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 97 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 154
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 155 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 211
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 212 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 263
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 264 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 291
>gi|300796171|ref|NP_001178959.1| heterogeneous nuclear ribonucleoprotein L [Bos taurus]
gi|410983084|ref|XP_003997873.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Felis catus]
gi|296477716|tpg|DAA19831.1| TPA: heterogeneous nuclear ribonucleoprotein L [Bos taurus]
Length = 588
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 162 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 221
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 222 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 279
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 280 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 337
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 95 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 152
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 153 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 209
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 210 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 261
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 262 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 289
>gi|52632383|ref|NP_001524.2| heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens]
gi|388452706|ref|NP_001252929.1| heterogeneous nuclear ribonucleoprotein L [Macaca mulatta]
gi|114676995|ref|XP_512642.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 6 [Pan
troglodytes]
gi|359318672|ref|XP_003638880.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Canis
lupus familiaris]
gi|402905454|ref|XP_003915534.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Papio anubis]
gi|215274006|sp|P14866.2|HNRPL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein L;
Short=hnRNP L
gi|119577232|gb|EAW56828.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_c [Homo
sapiens]
gi|306921585|dbj|BAJ17872.1| heterogeneous nuclear ribonucleoprotein L [synthetic construct]
gi|387542466|gb|AFJ71860.1| heterogeneous nuclear ribonucleoprotein L isoform a [Macaca
mulatta]
gi|410298568|gb|JAA27884.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 589
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>gi|296233743|ref|XP_002807879.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L [Callithrix jacchus]
Length = 589
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>gi|426388622|ref|XP_004060732.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Gorilla
gorilla gorilla]
Length = 589
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>gi|345311818|ref|XP_003429156.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L
[Ornithorhynchus anatinus]
Length = 693
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 13 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDILGACNAVNY 70
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I T D +VLL TI ++ DVL+
Sbjct: 71 AADNQ--IYIAGHPAFVNYSTSQKISRPGDTDDSRSVNSVLLFTIL-NPIYSITTDVLYT 127
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 128 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 179
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 180 EYAKPTRLNVFKNDQDTWDYTNPNL 204
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 106 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 164
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I Y++ T L++ N+ + DYT P+
Sbjct: 165 LNGADIYS-GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPN 203
>gi|197927211|ref|NP_001128232.1| heterogeneous nuclear ribonucleoprotein L isoform a [Rattus
norvegicus]
Length = 623
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 259
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 260 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 141/339 (41%), Gaps = 77/339 (22%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G +V D++ FG + + K QALV+F D
Sbjct: 100 VVHIRGLIDGVVEADLVE-ALQEFGPISYVVVMPKKR--QALVEFEDV------------ 144
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+G C + Y+A + Y+ P+ ++ S +
Sbjct: 145 -----------LGACNA-VNYAADNQI---------------YIAGHPAFVNYSTSQKIS 177
Query: 234 LDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + S +VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++
Sbjct: 178 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFD 236
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV---NS 348
VQ+A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ S
Sbjct: 237 SVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGS 295
Query: 349 QPSILGQQPVPMVGATANQY-NGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS----MPM 403
P+ +QP P++G +Y G F P+ G+ PA + P+
Sbjct: 296 NPNKRQRQP-PLLGDHPAEYGEGRGF------------PSVDSRGSCAPARRPPRKFSPV 342
Query: 404 MGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPP 442
+ P PPG P G G H G PPP
Sbjct: 343 LPLFPSHPPGG-PHG---------GYHSHYHDEGYGPPP 371
>gi|410337383|gb|JAA37638.1| heterogeneous nuclear ribonucleoprotein L [Pan troglodytes]
Length = 589
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>gi|74194841|dbj|BAE26011.1| unnamed protein product [Mus musculus]
Length = 592
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 62 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 119
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 120 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 176
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 177 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 228
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 229 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 256
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 141/339 (41%), Gaps = 77/339 (22%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G +V D++ FG + + K QALV+F D
Sbjct: 69 VVHIRGLIDGVVEADLVE-ALQEFGPISYVVVMPKKR--QALVEFEDV------------ 113
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+G C + Y+A + Y+ P+ ++ S +
Sbjct: 114 -----------LGACNA-VNYAADNQI---------------YIAGHPAFVNYSTSQKIS 146
Query: 234 LDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + S +VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++
Sbjct: 147 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFD 205
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV---NS 348
VQ+A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ S
Sbjct: 206 SVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGS 264
Query: 349 QPSILGQQPVPMVGATANQY-NGAQFAPPPPEQPMMHQPTAAGWGAVPPASQS----MPM 403
P+ +QP P++G +Y G F P+ G+ PA + P+
Sbjct: 265 NPNKRQRQP-PLLGDHPAEYGEGRGF------------PSVDSRGSCAPARRPPRKFSPV 311
Query: 404 MGNHPYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPP 442
+ P PPG P G G H G PPP
Sbjct: 312 LPLFPSHPPGG-PHG---------GYHSHYHDEGYGPPP 340
>gi|119577230|gb|EAW56826.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_a [Homo
sapiens]
Length = 557
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 131 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 190
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 191 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 248
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 249 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 306
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 64 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 121
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 122 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 178
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 179 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 230
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 231 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 258
>gi|156368308|ref|XP_001627637.1| predicted protein [Nematostella vectensis]
gi|156214552|gb|EDO35537.1| predicted protein [Nematostella vectensis]
Length = 203
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 28/210 (13%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ PPS+V+H R + C E +LI++ +PFG + T + QA +EF L AIA+
Sbjct: 1 HNTPPSRVIHCRAVADGCKETDLIQVLQPFGTI--TYVTLLPKIRQALVEFESLESAIAV 58
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKT-------TADVAGNVLLVTIEGTDARL 124
++Y S + P V G+ +++ YS QEI +K A N+LL+TI
Sbjct: 59 VTY--SQTSPLTVLGRQMFVNYSKSQEIKRDKVLNGDSNGACAEASNILLLTIINP-LHP 115
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++ +LH + S G V +I F K G QAL +A A L+G+ I
Sbjct: 116 INVKILHKICSPSGKVLRIVIFHKN-GLQAL-------SAERALAVLNGQDIY------- 160
Query: 185 MGPCTLRITYSAHT-DLSVKFQSHRSRDYT 213
G CTL+I YS L+V + DYT
Sbjct: 161 AGCCTLKIDYSKKAKKLNVFKNDDETWDYT 190
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SN+LL +I N + + + +LH + S G V +I +F KN GLQAL +A A
Sbjct: 102 SNILLLTIINPLHPINVKILHKICSPSGKVLRIVIFHKN-GLQAL-------SAERALAV 153
Query: 303 LEGHCIYDGGFCKLHISYSRHT-DLSIKVNNDRSRDYT 339
L G IY G C L I YS+ L++ N+D + DYT
Sbjct: 154 LNGQDIY-AGCCTLKIDYSKKAKKLNVFKNDDETWDYT 190
>gi|66816231|ref|XP_642125.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60470245|gb|EAL68225.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 530
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 17/205 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H R LP+ T+ ++ L PFGKV + QA IE + + ++IS
Sbjct: 41 PSPVIHCRGLPYSVTDADIHALLSPFGKV---EAVCLMRMGQALIEMDSIQTSTSIIS-- 95
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG----NVLLVTIEGTDARLVSIDVLH 131
S ++P + + + YS Q + N+K +A N++L TI ++ + +H
Sbjct: 96 LSITKPFILHNQKILFAYSKSQHLNNSKKNQPIAQTGSQNIILCTILNP-IYPITTNTIH 154
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
+ S +G V +I F+K +G Q V+F +A +AK +L+G+ I G C L+
Sbjct: 155 NIMSPYGRVIRIVIFQKKSGLQTFVEFDSPYSAWAAKESLNGQDIYN-------GGCKLQ 207
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPY 216
I ++ + L+VK ++ DYT +
Sbjct: 208 IEFARVSKLNVKQNDDKTADYTAEF 232
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
N++L +I N Y +T + +H + S +G V +I +F K GLQ +++ +A AKE+L
Sbjct: 135 NIILCTILNPIYPITTNTIHNIMSPYGRVIRIVIFQKKSGLQTFVEFDSPYSAWAAKESL 194
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
G IY+GG CKL I ++R + L++K N+D++ DYT
Sbjct: 195 NGQDIYNGG-CKLQIEFARVSKLNVKQNDDKTADYT 229
>gi|194215401|ref|XP_001496787.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Equus
caballus]
Length = 509
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 83 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 142
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 143 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFRNDQ 200
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 201 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 258
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 19 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 76
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 77 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 133
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 134 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCTLKI 185
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 186 EYAKPTRLNVFRNDQDTWDYTNPNL 210
>gi|449274548|gb|EMC83649.1| Heterogeneous nuclear ribonucleoprotein L-like protein, partial
[Columba livia]
Length = 471
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 21/205 (10%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF ++ A +++
Sbjct: 6 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENVESAKKCVTF 61
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 62 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 118
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V++ A AK AL+G I G CTL+I
Sbjct: 119 VCNPVGKVQRIVIFKRN-GIQAMVEYP--FCAQKAKAALNGADI-------YAGCCTLKI 168
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 169 EYARPTRLNVIRNDNDSWDYTKPYL 193
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 98/194 (50%), Gaps = 24/194 (12%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+++YP A AK A
Sbjct: 97 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEYP--FCAQKAKAA 153
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 154 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 209
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 210 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 262
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 263 GSVVMVSGLHQLKM 276
>gi|67971924|dbj|BAE02304.1| unnamed protein product [Macaca fascicularis]
Length = 456
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 30 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 89
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 90 GIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQ 147
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG +P G + Y+ + PPPP
Sbjct: 148 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDRPAEYGGPHGGYHSHYHDEGYGPPPP 205
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNV 112
+ QA +EF D+ A ++Y A + + G ++ YS Q+I + D +V
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSV 61
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL TI ++ DVL+ + + G V I F K G QA+V+F ++A AK +L+
Sbjct: 62 LLFTIL-NPIYSITTDVLYTICNPCGPVQGIVIFRKN-GVQAMVEFDSVQSAQRAKASLN 119
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 120 GADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 157
>gi|302790736|ref|XP_002977135.1| hypothetical protein SELMODRAFT_443468 [Selaginella moellendorffii]
gi|300155111|gb|EFJ21744.1| hypothetical protein SELMODRAFT_443468 [Selaginella moellendorffii]
Length = 466
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 153/343 (44%), Gaps = 56/343 (16%)
Query: 24 NLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83
L E ++ EL +L +PFG V + + R QA +E ++ QA ++ ++ SSE A+
Sbjct: 42 KLELEPSKGELEKLVRPFGSVTSYRLT---TRTQALLEMKNVKQAKKVVDHF--SSEKAR 96
Query: 84 VRGKTVYLQYSNRQEIVNNKTTADVA-------GNVLLVTIEGTDARLVSIDV--LHLVF 134
V+ +Y+ +S QE+ K + +A VL VT+ + IDV LH VF
Sbjct: 97 VKKAEIYVGFSRFQEL--EKDVSRLADPKQGPSSKVLAVTVTNP---IYPIDVYVLHRVF 151
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
S G V KIT K G +QF +TA+ K+ L+ R I G C + I Y
Sbjct: 152 SPHGSVEKITISRKL-GICGYIQFDSVKTAAHVKDLLNDRHIFD-------GCCKMEIQY 203
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVA----PSAIDASGQLSV-GLDGKK----------- 238
+ +L V F +RD+ + +P PS + A SV L +
Sbjct: 204 AKSQELGVYFNDDNNRDFKDTSIPSRVRSDPSILGAPPVESVPALTAEDAAAGAPAVVPT 263
Query: 239 --LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
+ V+ S N++ V D L +FS +G ++K+ + G Q LI+ D A
Sbjct: 264 PFIGRRKRVVRVSNLNVE-KVDEDKLFNLFSPYGKIRKVQVIKVTG--QGLIEMSDAFQA 320
Query: 297 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
+A L+G +++ + + ++N ++SRDYT
Sbjct: 321 ELASACLKGARVFEKELDTVVVDK--------ELNLNQSRDYT 355
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P S VL ++ N Y + + VLH VFS G V+KI + + G+ IQ+ V+TA K
Sbjct: 126 PSSKVLAVTVTNPIYPIDVYVLHRVFSPHGSVEKITI-SRKLGICGYIQFDSVKTAAHVK 184
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP-MVNSQPSILGQQPVP 359
+ L I+DG CK+ I Y++ +L + N+D +RD+ S P V S PSILG PV
Sbjct: 185 DLLNDRHIFDGC-CKMEIQYAKSQELGVYFNDDNNRDFKDTSIPSRVRSDPSILGAPPVE 243
Query: 360 MVGA 363
V A
Sbjct: 244 SVPA 247
>gi|340375987|ref|XP_003386515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Amphimedon queenslandica]
Length = 449
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS+V+H R +P CT L+ + FGK+ + Q+ +EF + AIA +++
Sbjct: 45 PPSRVVHARAVPDGCTHTLLVNVLSQFGKI--GYVTMMPKLRQSLVEFEKIEDAIACVTH 102
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEI-------VNNKTTAD----VAGNVLLVTIEGTDAR 123
+ + VY YS EI V N T D ++LL TI
Sbjct: 103 --CQQHQIFIMDRQVYFNYSTSSEITRSPYGVVPNNTAPDPNEPPENHILLFTI-FNPLY 159
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
+++DV+ + + +GFV +I F K G Q LV+F +A AK LDG I
Sbjct: 160 PITVDVIRTICTPYGFVQRIVIFRKN-GLQVLVEFDSNHSAQRAKQQLDGADI------- 211
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G CTL+I ++ L+V + DYT
Sbjct: 212 YAGCCTLKIEFARTNKLNVFKNDDMTCDYT 241
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PE+++LL +I N Y +T+DV+ + + +G VQ+I +F KN GLQ L+++ +A AK
Sbjct: 145 PENHILLFTIFNPLYPITVDVIRTICTPYGFVQRIVIFRKN-GLQVLVEFDSNHSAQRAK 203
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPM 360
+ L+G IY G C L I ++R L++ N+D + DYT+ + ++ P + P+
Sbjct: 204 QQLDGADIY-AGCCTLKIEFARTNKLNVFKNDDMTCDYTVQGQRLQSNFPRV---PPMQQ 259
Query: 361 VGATANQYNGAQFAPPPPEQ-PMMHQPTAAGWGAV 394
++ + +AP P P + AG G+V
Sbjct: 260 QQQQMRPFSTSPYAPQPTNSAPFVGTQAVAGSGSV 294
>gi|154147563|ref|NP_001093751.1| heterogeneous nuclear ribonucleoprotein L [Xenopus (Silurana)
tropicalis]
gi|140832702|gb|AAI35425.1| hnrpl protein [Xenopus (Silurana) tropicalis]
Length = 538
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 99/204 (48%), Gaps = 16/204 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+R L E +L E + FG + + V + QA +EF D+ A ++Y A
Sbjct: 50 SPVVHVRGLIDGVVEADLAEALQEFGTI--SYVVVMPKKRQALVEFEDILGACNAVNYAA 107
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA---GNVLLVTIEGTDARLVSIDVLHLV 133
+ V G ++ YS Q+I T D + NVLL TI ++ DVL+ +
Sbjct: 108 DNQ--IYVAGHPAFVNYSTSQKISRPTDTGDDSRGVNNVLLFTIL-NPIYSITTDVLYTI 164
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193
+ G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 165 CNPCGPVQRIVIFRKN-GVQAMVEFDSMQSAQRAKASLNGADI-------YSGCCTLKIE 216
Query: 194 YSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ + L+V + DYTNP L
Sbjct: 217 YAKPSRLNVFKNDQDTWDYTNPAL 240
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 15/149 (10%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+NVLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ +Q+A AK +
Sbjct: 142 NNVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSMQSAQRAKAS 200
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP----------MVNSQPSI 352
L G IY G C L I Y++ + L++ N+ + DYT P+ P +
Sbjct: 201 LNGADIYS-GCCTLKIEYAKPSRLNVFKNDQDTWDYTNPALSGQGDAAGNPNKRQRNPPL 259
Query: 353 LGQQPVPMVGATA---NQYNGAQFAPPPP 378
LG P G A Y+ + PPPP
Sbjct: 260 LGDHPAEYGGPHAGYHGHYHEEAYGPPPP 288
>gi|392339204|ref|XP_003753752.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like [Rattus norvegicus]
Length = 609
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 59/279 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G R+V D++ FG + + K Q LV+F D
Sbjct: 125 VVHIRGLIGRVVGADLVE-ALQEFGSISYVVVMPKKR--QTLVEFEDV------------ 169
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID--ASGQLS 231
+G C + Y+A + Y+ P+ I+ S ++S
Sbjct: 170 -----------LGACNA-VKYAADNQI---------------YIAGHPAFINYCTSQKIS 202
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
D + + ++VLL +I N Y++T DVL+ + + GP+Q+ +F +N G+QA++++
Sbjct: 203 RPGDSEDSQSINSVLLFTILNPIYSITTDVLYTICNPCGPIQRTVIFREN-GVQAMVEFD 261
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP-----STPMV 346
VQ+A AK +L+G IY G C L I Y++ T L++ NN + DYT P P
Sbjct: 262 SVQSAQSAKASLDGADIYS-GCCTLTIEYAKPTRLNVSKNNQDTWDYTNPXLSGQGDPGS 320
Query: 347 N-----SQPSILGQQPVPMV---GATANQYNGAQFAPPP 377
N QP +LG P G + Y+ + PPP
Sbjct: 321 NHNECQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYXPPP 359
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L +L+E + FG + + V + Q +EF D+ A + Y
Sbjct: 121 PASPVVHIRGLIGRVVGADLVEALQEFGSI--SYVVVMPKKRQTLVEFEDVLGACNAVKY 178
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--GNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ Y Q+I + D +VLL TI ++ DVL+
Sbjct: 179 AADNQ--IYIAGHPAFINYCTSQKISRPGDSEDSQSINSVLLFTIL-NPIYSITTDVLYT 235
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G + + F + G QA+V+F ++A SAK +LDG I G CTL I
Sbjct: 236 ICNPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADI-------YSGCCTLTI 287
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + + DYTNP L
Sbjct: 288 EYAKPTRLNVSKNNQDTWDYTNPXL 312
>gi|392346115|ref|XP_003749467.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein L-like, partial [Rattus norvegicus]
Length = 582
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 59/279 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G R+V D++ FG + + K Q LV+F D
Sbjct: 98 VVHIRGLIGRVVGADLVE-ALQEFGSISYVVVMPKKR--QTLVEFEDV------------ 142
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID--ASGQLS 231
+G C + Y+A + Y+ P+ I+ S ++S
Sbjct: 143 -----------LGACNA-VKYAADNQI---------------YIAGHPAFINYCTSQKIS 175
Query: 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
D + + ++VLL +I N Y++T DVL+ + + GP+Q+ +F +N G+QA++++
Sbjct: 176 RPGDSEDSQSINSVLLFTILNPIYSITTDVLYTICNPCGPIQRTVIFREN-GVQAMVEFD 234
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP-----STPMV 346
VQ+A AK +L+G IY G C L I Y++ T L++ NN + DYT P P
Sbjct: 235 SVQSAQSAKASLDGADIYS-GCCTLTIEYAKPTRLNVSKNNQDTWDYTNPXLSGQGDPGS 293
Query: 347 N-----SQPSILGQQPVPMV---GATANQYNGAQFAPPP 377
N QP +LG P G + Y+ + PPP
Sbjct: 294 NHNECQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYXPPP 332
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L +L+E + FG + + V + Q +EF D+ A + Y
Sbjct: 94 PASPVVHIRGLIGRVVGADLVEALQEFGSI--SYVVVMPKKRQTLVEFEDVLGACNAVKY 151
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--GNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ Y Q+I + D +VLL TI ++ DVL+
Sbjct: 152 AADNQ--IYIAGHPAFINYCTSQKISRPGDSEDSQSINSVLLFTIL-NPIYSITTDVLYT 208
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G + + F + G QA+V+F ++A SAK +LDG I G CTL I
Sbjct: 209 ICNPCGPIQRTVIFREN-GVQAMVEFDSVQSAQSAKASLDGADI-------YSGCCTLTI 260
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + + DYTNP L
Sbjct: 261 EYAKPTRLNVSKNNQDTWDYTNPXL 285
>gi|330801720|ref|XP_003288872.1| hypothetical protein DICPUDRAFT_55687 [Dictyostelium purpureum]
gi|325081065|gb|EGC34595.1| hypothetical protein DICPUDRAFT_55687 [Dictyostelium purpureum]
Length = 663
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 245 VLLASIENM-QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VLL +IE+ +++T+D L+ FS+ G V +I MF KN LQALI++ V A+ AK+ L
Sbjct: 177 VLLCTIESQANHSITIDHLYHAFSSCGEVLRIVMFTKNN-LQALIEFSSVDNALNAKKTL 235
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
GH ++ GG CKL + S+ L+I N DR++DYT
Sbjct: 236 FGHALFHGGQCKLKLEISKTDRLNITQNTDRAKDYT 271
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA 167
+ G+VLL TIE ++ID L+ FS+ G V +I F K QAL++FS + A +A
Sbjct: 173 IPGSVLLCTIESQANHSITIDHLYHAFSSCGEVLRIVMFTKN-NLQALIEFSSVDNALNA 231
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
K L G ++ + G C L++ S L++ + R++DYT
Sbjct: 232 KKTLFGHAL------FHGGQCKLKLEISKTDRLNITQNTDRAKDYT 271
>gi|313228979|emb|CBY18131.1| unnamed protein product [Oikopleura dioica]
Length = 409
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
+ E N++L +I N Y +T VLH + FG +++I +F K LQA+I++ D++ A+ A
Sbjct: 33 QKEHNIVLLTIRNPFYPITTSVLHKAAARFGDIKRIVIFKKK-FLQAMIEFSDIKMAIQA 91
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS-ILGQQPV 358
K L G IY G C + Y+R L++ N+D + DY++ S V +P +LG +P+
Sbjct: 92 KAGLHGQDIY-SGCCSIKCEYARTEKLNVYKNDDTTWDYSVSSQGQVQKKPCGLLGDRPI 150
Query: 359 PMVGATANQ-------------YNGAQFAPPP 377
GA N YN A PPP
Sbjct: 151 IPNGAPFNAERESVPPQVPFPVYNDAHGYPPP 182
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
A + EPA+ R ++ NR+ ++ N++L+TI ++ VLH +
Sbjct: 6 APTREPAKERVWQYEIERINRKSLL----IPQKEHNIVLLTIRNP-FYPITTSVLHKAAA 60
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
FG + +I F+K QA+++FSD + A AK L G+ I G C+++ Y+
Sbjct: 61 RFGDIKRIVIFKKKF-LQAMIEFSDIKMAIQAKAGLHGQDIYS-------GCCSIKCEYA 112
Query: 196 AHTDLSVKFQSHRSRDYT 213
L+V + DY+
Sbjct: 113 RTEKLNVYKNDDTTWDYS 130
>gi|341890178|gb|EGT46113.1| hypothetical protein CAEBREN_06779 [Caenorhabditis brenneri]
Length = 601
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG V C + A +EF D+ A A +++
Sbjct: 31 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCI--PHSRMALVEFEDIEGAKACVNFA 88
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
AS+ V G+ YS Q I + VL+VT+ +A+ + DV++ +
Sbjct: 89 ASNQ--INVGGQAALFNYSTSQCIERMGFESATPNKVLVVTV--LNAQYPIDADVIYQIS 144
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+A G V ++ K QALV+F E A +AK+A++G I G CTL++ +
Sbjct: 145 NAQGKVLRVAVMHKPTIVQALVEFESMEVAKAAKHAMNGADI-------YSGCCTLKVEF 197
Query: 195 SAHTDLSVKFQSHRSRDYTNP 215
+ + V Q RD+T P
Sbjct: 198 AKPDRVRVVRQDKDQRDFTLP 218
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N QY + DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 121 NKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTIVQALVEFESMEVAKAAKHA 180
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST--PMVNSQPSILGQQPVPM 360
+ G IY G C L + +++ + + + RD+TLP P + + +++ +P
Sbjct: 181 MNGADIY-SGCCTLKVEFAKPDRVRVVRQDKDQRDFTLPDNEVPQDSGRKTLIPSRPDDH 239
Query: 361 ------VGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
+ Y+ +AP PP QP P GA PP
Sbjct: 240 YYDRRPYEEERDPYDRRDYAPQPPPQPHYGYPPR---GAGPP 278
>gi|226481403|emb|CAX73599.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 535
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R LP E +LI + + FG + + + ++ QA IEF D+N A ++
Sbjct: 17 PSPVIHIRELPEHTLELDLIRVFEQFGSIRDIA--MIPHKGQALIEFDDINSAERAVA-- 72
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV-------AGNVLLVTIEGTDARLVSID 128
S + + YS + +++ D VL++T+ +++D
Sbjct: 73 RCSENAVMFANHRLKVNYSTSKRVIHRPLENDNQHPELPPESRVLILTVYNAQY-PITVD 131
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
V+H + + G V +I KT QA+V+F +TE A +AK L+G I G C
Sbjct: 132 VIHQITAKHGRVLRIVILRKTR-IQAMVEFKNTEEARTAKRHLNGADI-------YSGCC 183
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK 237
TL++ ++ T L+V S D+ NP L +P +A G+ + L G+
Sbjct: 184 TLKVEFARPTRLTVTRNDQDSWDFENPLLLSSPLN-EADGRGDISLLGR 231
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 54/231 (23%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+ +D++ VF FG + I QAL++F D +A A
Sbjct: 31 LELDLIR-VFEQFGSIRDIAMIPHKG--QALIEFDDINSAERA----------------- 70
Query: 185 MGPCTLRITYSAHTDLSVKFQS-----HR--SRDYTNPYLPVAPSAIDASGQLSVGLDGK 237
+ C+ A+ L V + + HR D +P LP
Sbjct: 71 VARCSENAVMFANHRLKVNYSTSKRVIHRPLENDNQHPELP------------------- 111
Query: 238 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
PES VL+ ++ N QY +T+DV+H + + G V +I + K +QA++++ + + A
Sbjct: 112 ---PESRVLILTVYNAQYPITVDVIHQITAKHGRVLRIVILRKT-RIQAMVEFKNTEEAR 167
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP---STPM 345
AK L G IY G C L + ++R T L++ N+ S D+ P S+P+
Sbjct: 168 TAKRHLNGADIY-SGCCTLKVEFARPTRLTVTRNDQDSWDFENPLLLSSPL 217
>gi|417401975|gb|JAA47851.1| Putative hnrnp-l/ptb/hephaestus splicing factor family [Desmodus
rotundus]
Length = 502
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ A EP + G+ + YS + I T D +G V
Sbjct: 111 KRQALVEFENMDSAKECVTFAAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 168
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA+V+F A AK AL+
Sbjct: 169 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALN 226
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 227 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 262
>gi|66820074|ref|XP_643683.1| hypothetical protein DDB_G0275365 [Dictyostelium discoideum AX4]
gi|60471793|gb|EAL69748.1| hypothetical protein DDB_G0275365 [Dictyostelium discoideum AX4]
Length = 695
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 245 VLLASIEN-MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VLL++IEN ++T+D L+ VFS+ G V +I MF+KN LQALI++ V++A+ AK+ L
Sbjct: 156 VLLSTIENPGSNSITIDHLYHVFSSCGEVLRIVMFNKNN-LQALIEFSTVESALHAKKTL 214
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN 347
H ++ GG C L + S+ L+I N DR++D++ S P VN
Sbjct: 215 SNHSLFHGGQCTLKLEVSKTDRLNITQNTDRAKDFS-KSLPTVN 257
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 61/252 (24%)
Query: 12 YTQPPSKVLHLRNLPWECTEEEL--IELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
Y PS VLH+R++P TE +L I FGK V+ + + +QA +E + A
Sbjct: 10 YNDVPSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVR--ILERFHQALLEMDSVESAT 67
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIV----------------------------- 100
++ Y S + GK V + +S Q I
Sbjct: 68 RLLKY--SQKNSLLLHGKPVQISFSKSQSINQPTPQSPTNTTTTTNTTSSSSSSHRSSPS 125
Query: 101 -------------------NNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVH 141
N +A +AG VLL TIE + ++ID L+ VFS+ G V
Sbjct: 126 SSSYNGLPQAGSRQSNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLYHVFSSCGEVL 185
Query: 142 KITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 201
+I F K QAL++FS E+A AK L S+ + G CTL++ S L+
Sbjct: 186 RIVMFNKN-NLQALIEFSTVESALHAKKTLSNHSL------FHGGQCTLKLEVSKTDRLN 238
Query: 202 VKFQSHRSRDYT 213
+ + R++D++
Sbjct: 239 ITQNTDRAKDFS 250
>gi|335775957|gb|AEH58745.1| heterogeneous nuclear ribonucleoprotein L-lik-like protein [Equus
caballus]
Length = 424
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 48 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 106
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 107 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 162
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 163 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 215
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 216 GSVVMVSGLHQLKM 229
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHLVF 134
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+ V
Sbjct: 13 AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYTVC 71
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+ G V +I F++ G QA+V+F A AK AL+G I G CTL+I Y
Sbjct: 72 NPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKIEY 123
Query: 195 SAHTDLSVKFQSHRSRDYTNPYL 217
+ T L+V + S DYT PYL
Sbjct: 124 ARPTRLNVIRNDNDSWDYTKPYL 146
>gi|26351857|dbj|BAC39565.1| unnamed protein product [Mus musculus]
Length = 329
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 65 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 122
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 123 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 179
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 180 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKI 231
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 232 EYAKPTRLNVFKNDQDTWDYTNPNL 256
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 158 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 216
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I Y++ T L++ N+ + DYT P+
Sbjct: 217 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPN 255
>gi|256080365|ref|XP_002576452.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|238661720|emb|CAZ32689.1| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 544
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R LP E +LI + + FG + + + ++ QA IEF D+N A ++
Sbjct: 26 PSPVIHIRELPEHTLELDLIRVFEQFGSIRDIA--MIPHKGQALIEFDDINSAERAVA-- 81
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV-------AGNVLLVTIEGTDARLVSID 128
S + + YS + +V+ D VL++T+ +++D
Sbjct: 82 RCSENAVMFANHRLKVNYSTSKRVVHRPLENDNQHSELPPESRVLMLTVYNAQY-PITVD 140
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
V+H + + G V +I KT QA+V+F +TE A +AK L+G I G C
Sbjct: 141 VIHQITAKHGRVLRIVILRKTR-IQAMVEFKNTEEARTAKRHLNGADI-------YSGCC 192
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK 237
TL++ ++ T L+V S D+ NP L ++ S ++ G+ + L G+
Sbjct: 193 TLKVEFARPTRLTVTRNDQDSWDFENPLL-LSTSLNESDGRGDISLLGR 240
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+ +D++ VF FG + I QAL++F D +A A
Sbjct: 40 LELDLIR-VFEQFGSIRDIAMIPHKG--QALIEFDDINSAERA----------------- 79
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+ C+ + +V F +HR + + V ++ Q S +L PES
Sbjct: 80 VARCS---------ENAVMFANHRLKVNYSTSKRVVHRPLENDNQHS------ELPPESR 124
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL+ ++ N QY +T+DV+H + + G V +I + K +QA++++ + + A AK L
Sbjct: 125 VLMLTVYNAQYPITVDVIHQITAKHGRVLRIVILRKT-RIQAMVEFKNTEEARTAKRHLN 183
Query: 305 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
G IY G C L + ++R T L++ N+ S D+ P
Sbjct: 184 GADIY-SGCCTLKVEFARPTRLTVTRNDQDSWDFENP 219
>gi|67972328|dbj|BAE02506.1| unnamed protein product [Macaca fascicularis]
Length = 437
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ EP + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTF--AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA+V+F A AK AL+
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALN 121
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 122 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 159
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 119
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 120 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 175
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 176 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 228
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 229 GSVVMVSGLHQLKM 242
>gi|17532395|ref|NP_495412.1| Protein C44B7.2, isoform b [Caenorhabditis elegans]
gi|351065574|emb|CCD61556.1| Protein C44B7.2, isoform b [Caenorhabditis elegans]
Length = 339
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG V C + A +EF D+ A A +++
Sbjct: 30 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCI--PHSRMALVEFEDIEGAKACVNF- 86
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
++S V G+ YS Q I + VL+VT+ +A+ + DV++ +
Sbjct: 87 -ATSNQINVGGQGALFNYSTSQCIERMGFESATPNKVLVVTV--LNAQYPIDADVIYQIS 143
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+A G V ++ K QALV+F E A +AK+A++G I G CTL++ +
Sbjct: 144 NAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADI-------YSGCCTLKVEF 196
Query: 195 SAHTDLSVKFQSHRSRDYTNP 215
+ + V+ Q RD+T P
Sbjct: 197 AKPDRVRVQRQDKDQRDFTLP 217
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N QY + DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 120 NKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHA 179
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST--PMVNSQ----------P 350
+ G IY G C L + +++ + ++ + RD+TLP P + + P
Sbjct: 180 MNGADIY-SGCCTLKVEFAKPDRVRVQRQDKDQRDFTLPDNRRPYEDDRNHYDRHDYQAP 238
Query: 351 SILGQQPVPMVGATANQYNGAQFAPPPP---------EQPMMHQPTAAGWGAV 394
S G G ++ Y G + PP P E QP G G V
Sbjct: 239 SSYGYS--SRGGGHSDYYGGDRGGPPHPPPSRYRDDYEDRGYAQPAGGGPGCV 289
>gi|355694958|gb|AER99845.1| heteroproteinous nuclear ribonucleoprotein L-like protein [Mustela
putorius furo]
Length = 380
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 5 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 63
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 64 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 119
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 120 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 172
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 173 GSVVMVSGLHQLKM 186
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVL+ V + G V +I F++ G QA+V+F A AK AL+G I
Sbjct: 19 ITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------Y 70
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 71 AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 103
>gi|47224789|emb|CAG06359.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 19/217 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R L TE +L + K FG++ + + + QA +E+AD+N + ++Y
Sbjct: 36 PSVVVHVRGLVDGVTEGDLCDALKEFGEI--SYVVLMPKKRQALVEYADMNGSFTAVTYA 93
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHLV 133
A + + G ++ YS Q+I + D NVLL TI ++ DVL+ +
Sbjct: 94 ADNQ--VYIAGHPAFINYSTSQKISRPGDSDDSRSVNNVLLFTIMNP-IYPITTDVLYTI 150
Query: 134 FSAFGFVHKITTFEKTAGFQALVQF---SDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
+ G V +I F K G QA+V++ ++A AK +L+G I G CTL
Sbjct: 151 CNNCGPVQRIVIFRKN-GVQAMVEYPFIDSVQSAQRAKASLNGADI-------YSGCCTL 202
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+I Y+ T L+V + DYTNP L P ++A+
Sbjct: 203 KIEYAKPTRLNVFKNDQETWDYTNPNLG-GPEDVNAN 238
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 22/181 (12%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ I+ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 99 YIAGHPAFINYSTSQKISRPGDSDDSRSVNNVLLFTIMNPIYPITTDVLYTICNNCGPVQ 158
Query: 274 KIAMFDKNGGLQALIQYP---DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKV 330
+I +F KN G+QA+++YP VQ+A AK +L G IY G C L I Y++ T L++
Sbjct: 159 RIVIFRKN-GVQAMVEYPFIDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFK 216
Query: 331 NNDRSRDYTLPST---PMVNS-------QPSILGQQPVPMVGA-----TANQYNGAQFAP 375
N+ + DYT P+ VN+ QP++LG P G + Y G + P
Sbjct: 217 NDQETWDYTNPNLGGPEDVNANPNKRQRQPALLGDHPPEYGGGYHGYDESYGYEGRRMGP 276
Query: 376 P 376
P
Sbjct: 277 P 277
>gi|71983992|ref|NP_495411.2| Protein C44B7.2, isoform a [Caenorhabditis elegans]
gi|351065573|emb|CCD61555.1| Protein C44B7.2, isoform a [Caenorhabditis elegans]
Length = 597
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 14/201 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG V C + A +EF D+ A A +++
Sbjct: 30 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCI--PHSRMALVEFEDIEGAKACVNF- 86
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
++S V G+ YS Q I + VL+VT+ +A+ + DV++ +
Sbjct: 87 -ATSNQINVGGQGALFNYSTSQCIERMGFESATPNKVLVVTV--LNAQYPIDADVIYQIS 143
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+A G V ++ K QALV+F E A +AK+A++G I G CTL++ +
Sbjct: 144 NAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADI-------YSGCCTLKVEF 196
Query: 195 SAHTDLSVKFQSHRSRDYTNP 215
+ + V+ Q RD+T P
Sbjct: 197 AKPDRVRVQRQDKDQRDFTLP 217
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N QY + DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 120 NKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHA 179
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST 343
+ G IY G C L + +++ + ++ + RD+TLP
Sbjct: 180 MNGADIYS-GCCTLKVEFAKPDRVRVQRQDKDQRDFTLPDN 219
>gi|7497376|pir||T15805 hypothetical protein C44B7.2 - Caenorhabditis elegans
Length = 493
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG V C + +R A +EF D+ A A +++
Sbjct: 33 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATC-IPHSR-MALVEFEDIEGAKACVNF- 89
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
++S V G+ YS Q I + VL+VT+ +A+ + DV++ +
Sbjct: 90 -ATSNQINVGGQGALFNYSTSQCIERMGFESATPNKVLVVTV--LNAQYPIDADVIYQIS 146
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+A G V ++ K QALV+F E A +AK+A++G I G CTL++ +
Sbjct: 147 NAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHAMNGADI-------YSGCCTLKVEF 199
Query: 195 SAHTDLSVKFQSHRSRDYTNP 215
+ + V+ Q RD+T P
Sbjct: 200 AKPDRVRVQRQDKDQRDFTLP 220
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N QY + DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 123 NKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHA 182
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST 343
+ G IY G C L + +++ + ++ + RD+TLP
Sbjct: 183 MNGADIY-SGCCTLKVEFAKPDRVRVQRQDKDQRDFTLPDN 222
>gi|449687307|ref|XP_002155274.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Hydra
magnipapillata]
Length = 759
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ PPSKV+H R + C E +L+++ +PFG + + QA +E+ +L AIA
Sbjct: 136 HNMPPSKVVHCRAVADGCKETDLVQIMRPFGSI--RALTLMPKLRQALVEYEELESAIAC 193
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEI-----VNNKTTADVAGNVLLVTIEGTDARLVS 126
++Y + +P + G+ +Y+ YS EI +N + N+LL TI V+
Sbjct: 194 VTY--AQIQPVLILGRQMYVNYSKSTEINRDFSNSNASVGQAPTNILLFTIINA-IHPVN 250
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
++ + + V +I F K G QALV+F + A + AL+G I G
Sbjct: 251 VETVKKICLQHAEVQRIVIFHKN-GLQALVEFLSVDDAQRIQQALNGCDIF-------AG 302
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRD 211
CTL+I +S L+V + + D
Sbjct: 303 CCTLKIDFSKTGRLNVHANTTETYD 327
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 38/204 (18%)
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + +T K QALV++ + E+A + + P +L M + YS
Sbjct: 165 FGSIRALTLMPKLR--QALVEYEELESAIAC--VTYAQIQPVLILGRQM-----YVNYSK 215
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA 256
T+++ RD++N SVG + +N+LL +I N +
Sbjct: 216 STEIN--------RDFSN-------------SNASVG------QAPTNILLFTIINAIHP 248
Query: 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316
V ++ + + VQ+I +F KN GLQAL+++ V A ++AL G C G C L
Sbjct: 249 VNVETVKKICLQHAEVQRIVIFHKN-GLQALVEFLSVDDAQRIQQALNG-CDIFAGCCTL 306
Query: 317 HISYSRHTDLSIKVNNDRSRDYTL 340
I +S+ L++ N + D +
Sbjct: 307 KIDFSKTGRLNVHANTTETYDIEI 330
>gi|417398360|gb|JAA46213.1| Putative heteroproteinous nuclear ribonucleoprotein l [Desmodus
rotundus]
Length = 285
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ EP + G+ + YS + I T D +G V
Sbjct: 111 KRQALVEFENMDSAKECVTF--AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 168
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA+V+F A AK AL+
Sbjct: 169 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALN 226
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 227 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 262
>gi|432843758|ref|XP_004065651.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Oryzias
latipes]
Length = 582
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 97/207 (46%), Gaps = 19/207 (9%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMI 72
PPS V+H+R L E +L+E + FG T C V + QA +EF + A +
Sbjct: 110 PPSPVVHVRGLCDAVVEADLVEALEKFG----TICYVMMMPFKRQALVEFDSVESAERCV 165
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD--VAGNVLLVTIEGTDARLVSIDVL 130
+ EP + + + +S Q I D VLL++I+ ++ DVL
Sbjct: 166 T--CGGREPVYIADQQAFFNFSTSQRITRPTNADDPTSKNKVLLLSIQNP-LYPITTDVL 222
Query: 131 HLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
+ V + G V +I F++ G QA+V+F E A AK AL+G I G CTL
Sbjct: 223 YTVCNPVGNVLRIVIFKRN-GIQAMVEFESVEDAQKAKLALNGADI-------YSGCCTL 274
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNPYL 217
+I Y+ L+V + S DYT P+L
Sbjct: 275 KIEYARPNRLNVVRNDNTSWDYTKPFL 301
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
++ VLL SI+N Y +T DVL+ V + G V +I +F +N G+QA++++ V+ A AK
Sbjct: 202 KNKVLLLSIQNPLYPITTDVLYTVCNPVGNVLRIVIFKRN-GIQAMVEFESVEDAQKAKL 260
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
AL G IY G C L I Y+R L++ N++ S DYT P + G+Q ++
Sbjct: 261 ALNGADIYSGC-CTLKIEYARPNRLNVVRNDNTSWDYTKPFLLHRDVVKRGKGRQRQAIL 319
Query: 362 GATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 416
G + G P P++ PT + + +S+ + M ++P + P + P
Sbjct: 320 GEHPSNGYG-------PHCPLLTLPTNSRYRR---SSEQVQDMISYPPLLPKTFP 364
>gi|402890606|ref|XP_003908574.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Papio anubis]
gi|119620774|gb|EAX00369.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_b [Homo
sapiens]
Length = 437
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 119
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 120 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 175
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 176 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 228
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 229 GSVVMVSGLHQLKM 242
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ EP + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTF--AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA++ F A AK AL+
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALN 121
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 122 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 159
>gi|355694928|gb|AER99833.1| heteroproteinous nuclear ribonucleoprotein L [Mustela putorius
furo]
Length = 249
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 55 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 112
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 113 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 169
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 170 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKI 221
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 222 EYAKPTRLNVFKNDQDTWDYTNPNL 246
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 148 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 206
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I Y++ T L++ N+ + DYT P+
Sbjct: 207 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPN 245
>gi|119577231|gb|EAW56827.1| heterogeneous nuclear ribonucleoprotein L, isoform CRA_b [Homo
sapiens]
Length = 590
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 123/281 (43%), Gaps = 60/281 (21%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G +V D++ FG + + K QALV+F D
Sbjct: 103 VVHIRGLIDGVVEADLVE-ALQEFGPISYVVVMPKKR--QALVEFEDV------------ 147
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+G C + Y+A + Y+ P+ ++ S +
Sbjct: 148 -----------LGACNA-VNYAADNQI---------------YIAGHPAFVNYSTSQKIS 180
Query: 234 LDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
G + S +VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA+++YP
Sbjct: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEYP 239
Query: 292 DVQ-TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS-----TPM 345
++ +A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ P
Sbjct: 240 LLENSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPG 298
Query: 346 VN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
N QP +LG P G + Y+ + PPPP
Sbjct: 299 SNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 339
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 16/209 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE-TASSAKNALDGRSIPRYLLPENMGPC 188
L+ + + G V +I F K G QA+V++ E +A AK +L+G I G C
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEYPLLENSAQRAKASLNGADI-------YSGCC 262
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
TL+I Y+ T L+V + DYTNP L
Sbjct: 263 TLKIEYAKPTRLNVFKNDQDTWDYTNPNL 291
>gi|354483412|ref|XP_003503887.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Cricetulus
griseus]
Length = 498
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 54 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 111
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 112 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 168
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 169 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKI 220
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 221 EYAKPTRLNVFKNDQDTWDYTNPNL 245
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 118 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 177
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 178 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 235
Query: 334 RSRDYTLPS 342
+ DYT P+
Sbjct: 236 DTWDYTNPN 244
>gi|194391004|dbj|BAG60620.1| unnamed protein product [Homo sapiens]
Length = 240
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 15/205 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 27 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 84
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 85 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 141
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ + G V +I F K G QA+V+F ++A AK +L+G I G CTL+I
Sbjct: 142 ICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIYS-------GCCTLKI 193
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + DYTNP L
Sbjct: 194 EYAKPTRLNVFKNDQDTWDYTNPNL 218
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
D ++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ VQ
Sbjct: 112 DSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQ 170
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
+A AK +L G IY G C L I Y++ T L++ N+ + DYT P+ SQ
Sbjct: 171 SAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGSQ 224
>gi|355755804|gb|EHH59551.1| hypothetical protein EGM_09690, partial [Macaca fascicularis]
Length = 501
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 18/179 (10%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 74 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 133
Query: 274 KIAMFDKNGGLQALIQYPDVQ-TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 332
+I +F KN G+QA+++YP ++ +A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 134 RIVIFRKN-GVQAMVEYPLLENSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKND 191
Query: 333 DRSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 192 QDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 250
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 10 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 67
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 68 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 124
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTE-TASSAKNALDGRSIPRYLLPENMGPCTLR 191
+ + G V +I F K G QA+V++ E +A AK +L+G I G CTL+
Sbjct: 125 ICNPCGPVQRIVIFRKN-GVQAMVEYPLLENSAQRAKASLNGADI-------YSGCCTLK 176
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYL 217
I Y+ T L+V + DYTNP L
Sbjct: 177 IEYAKPTRLNVFKNDQDTWDYTNPNL 202
>gi|297713191|ref|XP_002833087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Pongo abelii]
Length = 339
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 106 HKTPASPVVHIRGLIEGVVEADLVEDLQEFGPI--SSVVVMPKKRQALVEFEDVLGACNA 163
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
+SY A + + G ++ YS Q+I + + D +VLL TI ++ DV
Sbjct: 164 VSYAADNQ--ICIAGHPAFVNYSTIQKISHPGDSDDSRSVNSVLLFTILNP-IYSITTDV 220
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G C
Sbjct: 221 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQWAKASLNGADI-------YSGCCA 272
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L++ Y+ T L+V + DYTNP L
Sbjct: 273 LKMEYAKPTRLNVFKSDQDTWDYTNPNL 300
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA++++ VQ+A AK +
Sbjct: 202 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQWAKAS 260
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMV---NSQPSILGQQPVP 359
L G IY G C L + Y++ T L++ ++ + DYT P+ S P+ +QP P
Sbjct: 261 LNGADIY-SGCCALKMEYAKPTRLNVFKSDQDTWDYTNPNLSGQGDPGSNPNKRQRQP-P 318
Query: 360 MVGATANQYNG 370
++G +Y G
Sbjct: 319 LLGDHPAEYGG 329
>gi|427796049|gb|JAA63476.1| Putative heteroproteinous nuclear ribonucleoprotein l, partial
[Rhipicephalus pulchellus]
Length = 523
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y +T+DV+H + + G V +I +F KN G+QA++++ V+ AV AK++
Sbjct: 115 NHVLLMTILNPAYPITVDVIHTICTPSGKVMRIVIFKKN-GVQAMVEFDGVEAAVRAKKS 173
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ-PSILGQ 355
L G IY G C L I Y++ T L++ N++ S DYT P+ S+ P++LG+
Sbjct: 174 LNGADIYS-GCCTLKIEYAKPTRLNVYKNDNDSWDYTNPNLGKSGSERPALLGE 226
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
VLL+TI A +++DV+H + + G V +I F+K G QA+V+F E A AK +L
Sbjct: 117 VLLMTIL-NPAYPITVDVIHTICTPSGKVMRIVIFKKN-GVQAMVEFDGVEAAVRAKKSL 174
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
+G I G CTL+I Y+ T L+V + S DYTNP L
Sbjct: 175 NGADI-------YSGCCTLKIEYAKPTRLNVYKNDNDSWDYTNPNL 213
>gi|402890610|ref|XP_003908576.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 3
[Papio anubis]
Length = 413
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ EP + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTF--AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA++ F A AK AL+
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALN 121
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 122 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 159
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 93/185 (50%), Gaps = 28/185 (15%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 119
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P S +L P+P
Sbjct: 120 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRGSHGPLL---PLP--- 172
Query: 363 ATANQYN-GAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGM 421
++Y G++ P P+ P AS S GN P GS+ M G+
Sbjct: 173 ---SRYRMGSRDTPELVAYPL------------PQASSSYMHGGN----PSGSVVMVSGL 213
Query: 422 MQMHM 426
Q+ M
Sbjct: 214 HQLKM 218
>gi|348530603|ref|XP_003452800.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Oreochromis niloticus]
Length = 539
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMI 72
PPS V+H+R L E +L+E FG + C V + QA +EF + A +
Sbjct: 69 PPSPVVHVRGLCDAVVEGDLVEALDKFGNI----CYVMMMPFKRQALVEFDSVESAERCV 124
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD-VAGN-VLLVTIEGTDARLVSIDVL 130
S+ + + V + + +S Q I T D +GN VLL++I+ ++ DVL
Sbjct: 125 SF--GTRDAVYVAEQQAFFNFSTSQRITRPTNTDDPSSGNKVLLLSIQNP-LYPITTDVL 181
Query: 131 HLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
+ V + G V +I F++ G QA+V+F + A AK AL+G I G CTL
Sbjct: 182 YTVCNPVGNVLRIVIFKRN-GIQAMVEFESVKDAQKAKLALNGADI-------YAGCCTL 233
Query: 191 RITYSAHTDLSVKFQSHRSRDYTNPYL 217
+I Y+ L+V ++ S DYT P+L
Sbjct: 234 KIEYARPNRLNVICNNNTSWDYTKPFL 260
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T DVL+ V + G V +I +F +N G+QA++++ V+ A AK A
Sbjct: 162 NKVLLLSIQNPLYPITTDVLYTVCNPVGNVLRIVIFKRN-GIQAMVEFESVKDAQKAKLA 220
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R L++ NN+ S DYT P
Sbjct: 221 LNGADIY-AGCCTLKIEYARPNRLNVICNNNTSWDYTKP 258
>gi|226487300|emb|CAX75515.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
gi|226487302|emb|CAX75516.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 603
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +++
Sbjct: 47 RLEASPSRVIHIRNMPADATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEESVQ 104
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 105 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 162
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F D A A
Sbjct: 163 PNTVLHVVIDNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAM 222
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 223 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 121 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 180
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ D A VA L G IY G C L +
Sbjct: 181 HVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAMLLLNGQNIYTGC-CSLQV 239
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ ++ + L P + +T N P
Sbjct: 240 EFWKARGPLEVRRENDKCRDYTV--SPLTEAELNSLQALPSGVSASTNNSTINTIPQPTI 297
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PT A + A+P AS S
Sbjct: 298 GQNISLGNPTTA-FTAIPQASAS 319
>gi|226487296|emb|CAX75513.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 571
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +++
Sbjct: 15 RLEASPSRVIHIRNMPADATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEESVQ 72
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 73 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 130
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F D A A
Sbjct: 131 PNTVLHVVIDNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAM 190
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 191 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 229
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 89 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 148
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ D A VA L G IY G C L +
Sbjct: 149 HVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQDHIQAFVAMLLLNGQNIYTGC-CSLQV 207
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ ++ + L P + +T N P
Sbjct: 208 EFWKARGPLEVRRENDKCRDYTV--SPLTEAELNSLQALPSGVTASTNNSTINTIPQPTI 265
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PT A + A+P AS S
Sbjct: 266 GQNISLGNPTTA-FTAIPQASAS 287
>gi|159163853|pdb|2CQ1|A Chain A, Solution Structure Of Rna Binding Domain In Ptb-Like
Protein L
Length = 101
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 71
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
++ + +R + +Y+QYSN +E+
Sbjct: 72 SAVT--PHLRNQPIYIQYSNHKEL 93
>gi|62088112|dbj|BAD92503.1| polypyrimidine tract binding protein 2 variant [Homo sapiens]
Length = 177
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 79 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 136
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA 109
S+ +R + +Y+QYSN +E+ + T V+
Sbjct: 137 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQVS 168
>gi|324503755|gb|ADY41626.1| Heterogeneous nuclear ribonucleoprotein L, partial [Ascaris suum]
Length = 614
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A A + Y
Sbjct: 23 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARACVVY- 79
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ + V G+ YS + I ++ +VL++TI V++DV+H +
Sbjct: 80 -AQTNQIYVAGQAALFNYSTSKMIQRLGLESEHPNHVLILTIYNAQYP-VTVDVIHQICE 137
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
GFV +I +T QALV+F + A AK+A++G I G CTL++ ++
Sbjct: 138 PHGFVKRIAMIRRTM-LQALVEFESADVAKKAKHAMNGADI-------YSGCCTLKVEFA 189
Query: 196 AHTDLSVKFQSHRSRDYT 213
+ V DYT
Sbjct: 190 KPDHVKVTRNDQDQWDYT 207
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E ++VL+ +I N QY VT+DV+H + G V++IAM + LQAL+++
Sbjct: 106 GLESEHPNHVLILTIYNAQYPVTVDVIHQICEPHGFVKRIAMI-RRTMLQALVEFESADV 164
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
A AK A+ G IY G C L + +++ + + N+ DYT
Sbjct: 165 AKKAKHAMNGADIY-SGCCTLKVEFAKPDHVKVTRNDQDQWDYT 207
>gi|324504331|gb|ADY41870.1| Heterogeneous nuclear ribonucleoprotein L [Ascaris suum]
Length = 536
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 13/203 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL TE +L++ FG++ +C G + A +EF + + A A I+Y
Sbjct: 70 PSVVVHVRNLSSTTTEADLLDALCFFGEIAYVRCIPG--KGMALVEFEEEDSARACITY- 126
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+++ + G+ YS ++I + A VL++T+ + + I+V+ + +
Sbjct: 127 -TNNTQIYIMGQAALFNYSTSKKIQRVGLETEHASRVLILTVYNV-CQPIDINVIFQICA 184
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
+G V +I + G QALV+F D + A +AK ++G I G CTL++ ++
Sbjct: 185 PYGVVKRIAMLHR-FGVQALVEFDDMQMAKNAKRGINGADIYH-------GCCTLKVEFA 236
Query: 196 AHTDLSVKFQSHRSRDYTNPYLP 218
++V + DYT P
Sbjct: 237 KPDHVNVTANTSMQWDYTTGLTP 259
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E S VL+ ++ N+ + ++V+ + + +G V++IAM + G+QAL+++ D+Q
Sbjct: 153 GLETEHASRVLILTVYNVCQPIDINVIFQICAPYGVVKRIAMLHR-FGVQALVEFDDMQM 211
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK + G IY G C L + +++ +++ N DYT TP P + Q
Sbjct: 212 AKNAKRGINGADIYHGC-CTLKVEFAKPDHVNVTANTSMQWDYTTGLTPGFIDYPHTIQQ 270
>gi|440910313|gb|ELR60121.1| Heterogeneous nuclear ribonucleoprotein L, partial [Bos grunniens
mutus]
Length = 512
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 18/179 (10%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 85 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 144
Query: 274 KIAMFDKNGGLQALIQYPDV-QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 332
+I +F KN G+QA+++YP + A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 145 RIVIFRKN-GVQAMVEYPLLGNGAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKND 202
Query: 333 DRSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 203 QDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 261
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 21 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 78
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 79 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTIL-NPIYSITTDVLYT 135
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDT-ETASSAKNALDGRSIPRYLLPENMGPCTLR 191
+ + G V +I F K G QA+V++ A AK +L+G I G CTL+
Sbjct: 136 ICNPCGPVQRIVIFRKN-GVQAMVEYPLLGNGAQRAKASLNGADI-------YSGCCTLK 187
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYL 217
I Y+ T L+V + DYTNP L
Sbjct: 188 IEYAKPTRLNVFKNDQDTWDYTNPNL 213
>gi|442755235|gb|JAA69777.1| Putative polypyrimidine tract binding protein 1 [Ixodes ricinus]
Length = 274
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+RN+P + T+ +++ LG PFGKV N G +NQAF+E +D A++M+ Y+
Sbjct: 93 PSRVVHIRNIPNDATDTDIVHLGIPFGKVTNVLQLKG--KNQAFLEMSDEASAVSMVDYF 150
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+S VRG+ VY+Q+SN +E+
Sbjct: 151 TKASPT--VRGRVVYVQFSNHREL 172
>gi|119620775|gb|EAX00370.1| heterogeneous nuclear ribonucleoprotein L-like, isoform CRA_c [Homo
sapiens]
Length = 175
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ EP + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTF--AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA++ F A AK AL+
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAALN 121
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 122 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 159
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ + V A AK A
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMLMFESVLCAQKAKAA 119
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 120 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 157
>gi|350644874|emb|CCD60410.1| polypyrimidine tract binding protein, putative [Schistosoma
mansoni]
Length = 427
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +A+
Sbjct: 47 RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEEAVQ 104
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 105 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 162
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F + A A
Sbjct: 163 PNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAM 222
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 223 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 121 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 180
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ + A VA L G IY G C L +
Sbjct: 181 HVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTG-CCSLQV 239
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ + + + L P + +T N + P
Sbjct: 240 EFWKARGPLEVRRENDKCRDYTI--SPLTDDELNSLQALPGGVTASTNNSTINSISQPSI 297
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PTAA + AVP A+ S
Sbjct: 298 GQNIPLGNPTAA-FTAVPQAAAS 319
>gi|195584911|ref|XP_002082247.1| GD25314 [Drosophila simulans]
gi|194194256|gb|EDX07832.1| GD25314 [Drosophila simulans]
Length = 388
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + GPV +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGPVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + + S
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGKSLFSI 185
Query: 350 PS---ILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P +L QP P++G GA F PP P H T W
Sbjct: 186 PENVVMLESQP-PLLGP------GAAF--PPFGAPEYHTTTPENW 221
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGPVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|308502740|ref|XP_003113554.1| hypothetical protein CRE_26483 [Caenorhabditis remanei]
gi|308263513|gb|EFP07466.1| hypothetical protein CRE_26483 [Caenorhabditis remanei]
Length = 602
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 21/203 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG V C + +R A +EF D+ A A +++
Sbjct: 32 PSIVVHVRNLHQKVTEADLLEALSNFGPVAYATC-IPHSR-MALVEFEDIEGAKACVNFA 89
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
AS+S V G+ YS Q I + + VL+VT+ +A+ V DV++ +
Sbjct: 90 ASNS--INVGGQAALFNYSTSQCIERMGFESAIPNKVLVVTV--LNAQYPVDADVIYQIS 145
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+A G V ++ K QALV+F E A +AK+A++G I G CTL++ +
Sbjct: 146 NAQGRVLRVAVMHKPTIVQALVEFESMEIAKAAKHAMNGADI-------YSGCCTLKVEF 198
Query: 195 SAHTDL-------SVKFQSHRSR 210
+ L ++FQ R R
Sbjct: 199 AKVCGLFFFLNHHCIRFQPDRVR 221
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VL+ ++ N QY V DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 122 NKVLVVTVLNAQYPVDADVIYQISNAQGRVLRVAVMHKPTIVQALVEFESMEIAKAAKHA 181
Query: 303 LEGHCIYDGGFCKLHISYSRHTDL-------SIKVNNDR---------SRDYTLPS 342
+ G IY G C L + +++ L I+ DR RD+T+P
Sbjct: 182 MNGADIY-SGCCTLKVEFAKVCGLFFFLNHHCIRFQPDRVRVTRQDKDQRDFTIPE 236
>gi|256076161|ref|XP_002574382.1| polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 463
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +A+
Sbjct: 83 RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEEAVQ 140
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 141 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 198
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F + A A
Sbjct: 199 PNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAM 258
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 259 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 157 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 216
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ + A VA L G IY G C L +
Sbjct: 217 HVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTG-CCSLQV 275
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ + + + L P + +T N + P
Sbjct: 276 EFWKARGPLEVRRENDKCRDYTI--SPLTDDELNSLQALPGGVTASTNNSTINSISQPSI 333
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PTAA + AVP A+ S
Sbjct: 334 GQNIPLGNPTAA-FTAVPQAAAS 355
>gi|350644875|emb|CCD60411.1| polypyrimidine tract binding protein, putative [Schistosoma
mansoni]
Length = 592
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +A+
Sbjct: 47 RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEEAVQ 104
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 105 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 162
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F + A A
Sbjct: 163 PNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAM 222
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 223 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 261
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 121 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 180
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ + A VA L G IY G C L +
Sbjct: 181 HVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTGC-CSLQV 239
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ + + + L P + +T N + P
Sbjct: 240 EFWKARGPLEVRRENDKCRDYTI--SPLTDDELNSLQALPGGVTASTNNSTINSISQPSI 297
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PTAA + AVP A+ S
Sbjct: 298 GQNIPLGNPTAA-FTAVPQAAAS 319
>gi|324504296|gb|ADY41855.1| Heterogeneous nuclear ribonucleoprotein L, partial [Ascaris suum]
Length = 626
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A A + Y
Sbjct: 23 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARACVVY- 79
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ + V G+ YS + I ++ +VL++TI V++DV+H +
Sbjct: 80 -AQTNQIYVAGQAALFNYSTSKMIQRLGLESEHPNHVLILTIYNAQYP-VTVDVIHQICE 137
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
GFV +I +T QALV+F + A AK+A++G I G CTL++ ++
Sbjct: 138 PHGFVKRIAMIRRTM-LQALVEFESADVAKKAKHAMNGADI-------YSGCCTLKVEFA 189
Query: 196 AHTDLSVKFQSHRSRDYT 213
+ V DYT
Sbjct: 190 KPDHVKVTRNDQDQWDYT 207
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E ++VL+ +I N QY VT+DV+H + G V++IAM + LQAL+++
Sbjct: 106 GLESEHPNHVLILTIYNAQYPVTVDVIHQICEPHGFVKRIAMI-RRTMLQALVEFESADV 164
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
A AK A+ G IY G C L + +++ + + N+ DYT
Sbjct: 165 AKKAKHAMNGADIY-SGCCTLKVEFAKPDHVKVTRNDQDQWDYT 207
>gi|386768309|ref|NP_001246425.1| smooth, isoform L [Drosophila melanogaster]
gi|383302597|gb|AFH08178.1| smooth, isoform L [Drosophila melanogaster]
Length = 492
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + + +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTVKEIGNG 185
Query: 350 PSILGQQPV---PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
S L Q+P+ P++G GA F PP P H T W
Sbjct: 186 RSPLLQEPLYEPPLLGP------GAAF--PPFGAPEYHTTTPENW 222
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|256076159|ref|XP_002574381.1| polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 639
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 34/226 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +A+
Sbjct: 83 RLEASPSRVIHIRNMPGDATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEEAVQ 140
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 141 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 198
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F + A A
Sbjct: 199 PNTVLHVVIDNIMGQQINHVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAM 258
Query: 169 NALDGRSIPRYLLPENMGPCTLRITY-SAHTDLSVKFQSHRSRDYT 213
L+G++I G C+L++ + A L V+ ++ + RDYT
Sbjct: 259 LLLNGQNIY-------TGCCSLQVEFWKARGPLEVRRENDKCRDYT 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +F +H + + + + +A+ + L G + + VL I+N M +
Sbjct: 157 LIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGVPNTVLHVVIDNIMGQQIN 216
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+L+ +F FG + ++ +F +N + L+++ + A VA L G IY G C L +
Sbjct: 217 HVILYKIFHRFGTILRVLIFLRNNQYRCLLEFQNHIQAFVAMLLLNGQNIYTGC-CSLQV 275
Query: 319 SYSRHTD-LSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPP 377
+ + L ++ ND+ RDYT+ +P+ + + + L P + +T N + P
Sbjct: 276 EFWKARGPLEVRRENDKCRDYTI--SPLTDDELNSLQALPGGVTASTNNSTINSISQPSI 333
Query: 378 PEQPMMHQPTAAGWGAVPPASQS 400
+ + PTAA + AVP A+ S
Sbjct: 334 GQNIPLGNPTAA-FTAVPQAAAS 355
>gi|402594034|gb|EJW87961.1| hypothetical protein WUBG_01127 [Wuchereria bancrofti]
Length = 608
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A + + Y
Sbjct: 33 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARSCVVY- 89
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
+ + V G+ YS + I ++ +VL++TI +A+ +++DV+H +
Sbjct: 90 -AQTNQIYVAGQAALFNYSTSKMIQRLGLESETPNHVLILTI--YNAQYPINVDVIHQIC 146
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
GFV +I +T QALV+F E A AK+A++G I G CTL++ +
Sbjct: 147 ELHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADI-------YSGCCTLKVEF 198
Query: 195 SAHTDLSVKFQSHRSRDYT 213
+ + V DYT
Sbjct: 199 AKPEHVKVTRNDSDQWDYT 217
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E ++VL+ +I N QY + +DV+H + G V++IAM + LQAL+++ +
Sbjct: 116 GLESETPNHVLILTIYNAQYPINVDVIHQICELHGFVRRIAMI-RRTMLQALVEFESAEI 174
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
A AK A+ G IY G C L + +++ + + N+ DYT
Sbjct: 175 AKKAKHAMNGADIY-SGCCTLKVEFAKPEHVKVTRNDSDQWDYT 217
>gi|170576159|ref|XP_001893522.1| RNA binding protein [Brugia malayi]
gi|158600425|gb|EDP37644.1| RNA binding protein, putative [Brugia malayi]
Length = 659
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A + + Y
Sbjct: 33 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARSCVVY- 89
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ + V G+ YS + I ++ +VL++TI +++DV+H +
Sbjct: 90 -AQTNQIYVAGQAALFNYSTSKMIQRLGLESETPNHVLILTIYNAQYP-INVDVIHQICE 147
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195
GFV +I +T QALV+F E A AK+A++G I G CTL++ ++
Sbjct: 148 LHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADI-------YSGCCTLKVEFA 199
Query: 196 AHTDLSVKFQSHRSRDYT 213
+ V DYT
Sbjct: 200 KPEHVKVTRNDSDQWDYT 217
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E ++VL+ +I N QY + +DV+H + G V++IAM + LQAL+++ +
Sbjct: 116 GLESETPNHVLILTIYNAQYPINVDVIHQICELHGFVRRIAMI-RRTMLQALVEFESAEI 174
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
A AK A+ G IY G C L + +++ + + N+ DYT
Sbjct: 175 AKKAKHAMNGADIY-SGCCTLKVEFAKPEHVKVTRNDSDQWDYT 217
>gi|74222755|dbj|BAE42243.1| unnamed protein product [Mus musculus]
Length = 172
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ ++ P + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTF--AADVPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL++I+ +++DVL+ V + G V +I F++ G QA+V+F A AK AL+
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALN 121
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 122 GADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 159
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 119
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 120 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 157
>gi|170582502|ref|XP_001896158.1| hypothetical protein [Brugia malayi]
gi|158596691|gb|EDP34993.1| conserved hypothetical protein [Brugia malayi]
Length = 643
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 15/199 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A + + Y
Sbjct: 448 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARSCVVY- 504
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
+ + V G+ YS + I ++ +VL++TI +A+ +++DV+H +
Sbjct: 505 -AQTNQIYVAGQAALFNYSTSKMIQRLGLESETPNHVLILTI--YNAQYPINVDVIHQIC 561
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
GFV +I +T QALV+F E A AK+A++G I G CTL++ +
Sbjct: 562 ELHGFVRRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYS-------GCCTLKVEF 613
Query: 195 SAHTDLSVKFQSHRSRDYT 213
+ + V DYT
Sbjct: 614 AKPEHVKVTRNDSDQWDYT 632
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E ++VL+ +I N QY + +DV+H + G V++IAM + LQAL+++ +
Sbjct: 531 GLESETPNHVLILTIYNAQYPINVDVIHQICELHGFVRRIAMI-RRTMLQALVEFESAEI 589
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
A AK A+ G IY G C L + +++ + + N+ DYT
Sbjct: 590 AKKAKHAMNGADIY-SGCCTLKVEFAKPEHVKVTRNDSDQWDYT 632
>gi|340708741|ref|XP_003392980.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Bombus
terrestris]
Length = 479
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA++++ V++A AKE
Sbjct: 43 NHVLLFTIINPVYPITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVEFDTVESATRAKET 101
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I +++ T L++ N+ S DYT P+
Sbjct: 102 LHGADIYS-GCCTLKIDFAKPTKLNVYKNDAESWDYTTPT 140
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 98 EIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
E+ + + +VLL TI ++++VLH + + G V +I F+K G QA+V+
Sbjct: 31 ELRRKREDNNKPNHVLLFTII-NPVYPITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVE 88
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
F E+A+ AK L G I G CTL+I ++ T L+V S DYT P L
Sbjct: 89 FDTVESATRAKETLHGADI-------YSGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTL 141
Query: 218 PVAPSAIDASGQ 229
+ DA+G
Sbjct: 142 GSSAHKNDATGN 153
>gi|221058202|ref|XP_002261609.1| polypyrimidine tract binding protein [Plasmodium knowlesi strain H]
gi|194247614|emb|CAQ41014.1| polypyrimidine tract binding protein, putative [Plasmodium knowlesi
strain H]
Length = 663
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 221 PSAIDA--SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 278
PS DA G + G K S V+L S+ N+ Y V +D+++ +FS GPV+KI F
Sbjct: 294 PSTKDALEGGNIKKGKHNK--NESSRVILVSVLNLHYPVDIDLIYYLFSKCGPVEKIIAF 351
Query: 279 DKNGGL-QALIQYPDVQTAVVAKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSR 336
+N + QAL+Q+ +++TA A + L IYDG C + I YS +L++K NN SR
Sbjct: 352 SRNPLIYQALVQFQNIETAQEAIKTLHNRNIYDG--CNTIQIQYSFLKELNVKANNSSSR 409
Query: 337 DYT 339
DYT
Sbjct: 410 DYT 412
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 48/234 (20%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V ID+++ +FS G V KI F + +QALVQF + ETA A L R+I
Sbjct: 330 VDIDLIYYLFSKCGPVEKIIAFSRNPLIYQALVQFQNIETAQEAIKTLHNRNIYD----- 384
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT--------NP--------YLPVAPSAIDAS 227
G T++I YS +L+VK + SRDYT NP LP P+
Sbjct: 385 --GCNTIQIQYSFLKELNVKANNSSSRDYTTTDVSKNNNPVNIQTSHGVLP-TPTQKGND 441
Query: 228 GQLSVGLDGK--------KLEPESNVLLASIENMQYAVTLDV-----LHMVFSAFGPVQK 274
+L + L+ K K ++ VL+ Y + D L +FS +G V +
Sbjct: 442 SELYLILERKFKLVDFDAKNASKTPVLIC------YNIAKDYTDVHKLFNLFSVYGFVSR 495
Query: 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
I + + ALIQY A VA+E L+ H DG L I++S+ D+ I
Sbjct: 496 IKILREKPDC-ALIQYAGHLFASVAQECLQ-HSKIDGQV--LEINFSKILDIRI 545
>gi|350413134|ref|XP_003489890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Bombus
impatiens]
Length = 479
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA++++ V++A AKE
Sbjct: 43 NHVLLFTIINPVYPITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVEFDTVESATRAKET 101
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
L G IY G C L I +++ T L++ N+ S DYT P+
Sbjct: 102 LHGADIYS-GCCTLKIDFAKPTKLNVYKNDAESWDYTTPT 140
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
++++VLH + + G V +I F+K G QA+V+F E+A+ AK L G I
Sbjct: 57 ITVEVLHAISAPSGQVQRIVIFKKN-GVQAMVEFDTVESATRAKETLHGADI-------Y 108
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
G CTL+I ++ T L+V S DYT P L + DA+G
Sbjct: 109 SGCCTLKIDFAKPTKLNVYKNDAESWDYTTPTLGSSAHKNDATGN 153
>gi|253723235|pdb|2E5I|A Chain A, Solution Structure Of Rna Binding Domain 2 In
Heterogeneous Nuclear Ribonucleoprotein L-Like
Length = 124
Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 231 SVGLDGKKLEPESN---------VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
S G GK++ N VLL SI+N Y +T+DVL+ V + G VQ+I +F +N
Sbjct: 2 SSGSSGKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN 61
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
G+QA++++ V A AK AL G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 62 -GIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 119
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 94 SNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAG 151
S+ + I T D +G VLL++I+ +++DVL+ V + G V +I F++ G
Sbjct: 5 SSGKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-G 62
Query: 152 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRD 211
QA+V+F A AK AL+G I G CTL+I Y+ T L+V + S D
Sbjct: 63 IQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKIEYARPTRLNVIRNDNDSWD 115
Query: 212 YTNPYL 217
YT PYL
Sbjct: 116 YTKPYL 121
>gi|339254278|ref|XP_003372362.1| hypothetical protein Tsp_10607 [Trichinella spiralis]
gi|316967236|gb|EFV51693.1| hypothetical protein Tsp_10607 [Trichinella spiralis]
Length = 235
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 115 VTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 174
+ ++G +AR VF FG V +I F K FQAL+QF D +A +AK ALDG+
Sbjct: 3 IRVKGKEAR-----CERQVFVTFGTVLRIIIFHKNNNFQALIQFLDPISAYAAKMALDGK 57
Query: 175 SIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
P G CTL+I +S L+VK+ + +SRD+TNP LP
Sbjct: 58 -------PLINGCCTLKIEFSKLATLNVKYNNEKSRDFTNPNLP 94
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 265 VFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
VF FG V +I +F KN QALIQ+ D +A AK AL+G + +G C L I +S+
Sbjct: 16 VFVTFGTVLRIIIFHKNNNFQALIQFLDPISAYAAKMALDGKPLINGC-CTLKIEFSKLA 74
Query: 325 DLSIKVNNDRSRDYTLPSTP 344
L++K NN++SRD+T P+ P
Sbjct: 75 TLNVKYNNEKSRDFTNPNLP 94
>gi|399216457|emb|CCF73145.1| unnamed protein product [Babesia microti strain RI]
Length = 526
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 104/232 (44%), Gaps = 31/232 (13%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
+ L LRNL TE ++ + +PF + + K + ++ AF+EF A A +++
Sbjct: 47 RTLLLRNLTPAVTEADVRSVMQPFSEDLTLKILMFPHQGNAFVEFPTSGDAQAALNFM-- 104
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG-----------------NVLLVTIEGT 120
P V+G + + S R + N + + +LLV+I
Sbjct: 105 QQHPVLVKGIPINVILSKRPTLSNKNHSHKIHNENGLGRNNELNKATGPTKILLVSITNL 164
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRY 179
V I+++H +FS FG V+KI F K A FQA VQF + A AL+ R+I
Sbjct: 165 -VYPVDIELIHFLFSKFGTVNKIVCFSKNPATFQAFVQFEHHSQSKEALAALNNRNI--- 220
Query: 180 LLPENMGPC-TLRITYSAHTDLSVKFQSHRSRDYTN-PYLPVAPSAIDASGQ 229
C T+ ++YS DL VK S RS DYT+ P L P + GQ
Sbjct: 221 -----YSDCNTIHVSYSNMEDLIVKSNSARSWDYTSAPLLDRPPDYLRGRGQ 267
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKE 301
+ +LL SI N+ Y V ++++H +FS FG V KI F KN QA +Q+ + A
Sbjct: 154 TKILLVSITNLVYPVDIELIHFLFSKFGTVNKIVCFSKNPATFQAFVQFEHHSQSKEALA 213
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL 353
AL IY C +H+SYS DL +K N+ RS DYT S P+++ P L
Sbjct: 214 ALNNRNIYSD--CNTIHVSYSNMEDLIVKSNSARSWDYT--SAPLLDRPPDYL 262
>gi|328875343|gb|EGG23708.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 404
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SN+LL SI + ++ L+ + S +G V +I +F K G LQA +++ +A VAKEA
Sbjct: 49 SNILLCSILTPIFPISTSTLYTIMSPYGRVLRIVIFQKKG-LQAFVEFESPYSAWVAKEA 107
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
L G IY G C L I Y+R L++K N+D++ DYT
Sbjct: 108 LNGQDIYTGS-CTLQIDYARVATLNVKQNDDKTYDYT 143
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 133/309 (43%), Gaps = 66/309 (21%)
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKT-----TADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ P + + +Y YS Q + ++K T N+LL +I T +S L+
Sbjct: 12 ATNPITFQNQKIYFSYSKSQHLHSSKKGSGAQTPTSPSNILLCSIL-TPIFPISTSTLYT 70
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+ S +G V +I F+K G QA V+F +A AK AL+G+ I G CTL+I
Sbjct: 71 IMSPYGRVLRIVIFQK-KGLQAFVEFESPYSAWVAKEALNGQDI-------YTGSCTLQI 122
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPY----LP------------VAPSAIDAS--------- 227
Y+ L+VK ++ DYT+ + LP V P+ +D +
Sbjct: 123 DYARVATLNVKQNDDKTYDYTSEHPGFSLPSYSPFPQPGAPGVHPAQLDPTYAKPAGPYM 182
Query: 228 ---------------GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
G S +EP S ++ + + +VT D L +F +G V
Sbjct: 183 MMGQQAATTMGIPPYGMYSAAPGAMGIEPPSQTVIM-VHRLADSVTSDQLFNLFCLYGNV 241
Query: 273 QKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKV 330
KI M K+G A++Q D A A L G I+ +L + +S+H +S
Sbjct: 242 IKIKMLQGAKSG---AMVQMGDGIQADTAIHCLNGASIFGQ---RLSVFHSKHPAIS--- 292
Query: 331 NNDRSRDYT 339
+D+++D+T
Sbjct: 293 ESDKTKDFT 301
>gi|393907053|gb|EJD74501.1| serologically defined colon cancer antigen 1 [Loa loa]
Length = 1568
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+RNL + TE +L+E FG + C G + A +EF ++ A + + Y
Sbjct: 961 PSIVVHVRNLSPKATEADLLEALSHFGPISYATCMPG--KRMALVEFEEVEGARSCVVY- 1017
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVF 134
+ + V G+ YS + I ++ +VL++TI +A+ +++DV+H +
Sbjct: 1018 -AQTNQIYVAGQAALFNYSTSKIIQRLGLESESPNHVLILTI--YNAQYPINVDVIHQIC 1074
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
GFV +I +T QALV+F E A AK+A++G I G CTL++ +
Sbjct: 1075 ELHGFVKRIAMIRRTM-LQALVEFESAEIAKKAKHAMNGADIYS-------GCCTLKVEF 1126
Query: 195 SAHTDLSVKFQSHRSRDYT 213
+ + V + DYT
Sbjct: 1127 AKPEHVKVTRNDNDQWDYT 1145
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 239 LEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
LE ES +VL+ +I N QY + +DV+H + G V++IAM + LQAL+++ + A
Sbjct: 1045 LESESPNHVLILTIYNAQYPINVDVIHQICELHGFVKRIAMI-RRTMLQALVEFESAEIA 1103
Query: 297 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
AK A+ G IY G C L + +++ + + N++ DYT
Sbjct: 1104 KKAKHAMNGADIY-SGCCTLKVEFAKPEHVKVTRNDNDQWDYT 1145
>gi|194375115|dbj|BAG62670.1| unnamed protein product [Homo sapiens]
Length = 179
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 30 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 89
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 90 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 147
Query: 334 RSRDYTLPSTPMVNSQ 349
+ DYT P+ SQ
Sbjct: 148 DTWDYTNPNLSGQGSQ 163
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNV 112
+ QA +EF D+ A ++Y A + + G ++ YS Q+I + D +V
Sbjct: 4 KRQALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSV 61
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172
LL TI ++ DVL+ + + G V +I F K G QA+V+F ++A AK +L+
Sbjct: 62 LLFTILNP-IYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLN 119
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
G I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 120 GADIYS-------GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 157
>gi|386768327|ref|NP_001246433.1| smooth, isoform Z [Drosophila melanogaster]
gi|383302606|gb|AFH08186.1| smooth, isoform Z [Drosophila melanogaster]
Length = 491
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 19/165 (11%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + + S
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGKSLFSI 185
Query: 350 PS---ILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P +L QP P++G GA F PP P H T W
Sbjct: 186 PENVVMLESQP-PLLGP------GAAF--PPFGAPEYHTTTPENW 221
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|410931471|ref|XP_003979119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Takifugu rubripes]
Length = 182
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMIS 73
PS V+H+R L E +LI+ + FG + C V + QA +EF++L A +S
Sbjct: 13 PSPVVHVRGLCEAVVEADLIDALEKFGPI----CYVMMMPFKRQALVEFSELQSADRCVS 68
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIV--NNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
+ EP + G+ Y YS + I N + VLL++I+ ++ DVL+
Sbjct: 69 --CGAKEPVYIAGQQAYFNYSTSKRITRPTNADNPNSGNKVLLLSIQNP-LYPITTDVLY 125
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+
Sbjct: 126 TVCNPIGNVLRIVIFKRN-GIQAMVEFESVHCAQKAKAALNGADI-------YAGCCTLK 177
Query: 192 ITYS 195
I Y+
Sbjct: 178 IEYA 181
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T DVL+ V + G V +I +F +N G+QA++++ V A AK A
Sbjct: 105 NKVLLLSIQNPLYPITTDVLYTVCNPIGNVLRIVIFKRN-GIQAMVEFESVHCAQKAKAA 163
Query: 303 LEGHCIYDGGFCKLHISYSR 322
L G IY G C L I Y+R
Sbjct: 164 LNGADIY-AGCCTLKIEYAR 182
>gi|119601315|gb|EAW80909.1| hCG41678, isoform CRA_b [Homo sapiens]
Length = 446
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y TLDVLH +FS FG V+ I F K+ QAL+QY D +
Sbjct: 235 GMAMAGQSLVLRIIVENLFYPTTLDVLHQIFSKFGTVKTIT-FIKDNQFQALLQYTDPEN 293
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
A K +L+ Y+ L I +S+ L++K NND+SRDY + P
Sbjct: 294 AQHTKLSLDWQNTYNACH-TLCIDFSKLISLNVKYNNDKSRDYHARTCP 341
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 26 PWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85
P + E E+I L PFGKV N G +NQAFI+ + A M S
Sbjct: 170 PIDVIEGEVISLELPFGKVTNLLMLKG--KNQAFIKMSTEEAANTMAVNSVQSGN----- 222
Query: 86 GKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
L ++ V+ VL + +E ++DVLH +FS FG V K T
Sbjct: 223 -----LAWTAPAAAVDAGMAMAGQSLVLRIIVENL-FYPTTLDVLHQIFSKFGTV-KTIT 275
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHTDLSVKF 204
F K FQAL+Q++D E A K +LD ++ C TL I +S L+VK+
Sbjct: 276 FIKDNQFQALLQYTDPENAQHTKLSLDWQN--------TYNACHTLCIDFSKLISLNVKY 327
Query: 205 QSHRSRDY 212
+ +SRDY
Sbjct: 328 NNDKSRDY 335
>gi|4001819|gb|AAC94999.1| putative polypyrimidine tract-binding protein [Carassius auratus]
Length = 165
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R +P E +E E++ LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 79 PSRVLHIRRVPIEVSEAEVVTLGVPFGKVTNLLLLKG--KNQAFLEMASEEAAITMVNYY 136
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
+++ VR + VY+QYSN +E+
Sbjct: 137 TTAT--PLVRNQPVYIQYSNHREL 158
>gi|226481683|emb|CAX73739.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 518
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 26/217 (11%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+P+ PS V+H+R LP E +++++ +P+G++ + + +NQA +EF D+
Sbjct: 13 SRPEDWGEIDPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVA--MMPQKNQALVEFEDI 70
Query: 66 NQAIAMISYYASSSEPA-QVRGKTVYLQYSNRQEIVN---NKTTAD------VAGNVLLV 115
+ A +I PA ++ V + +S + IV N+ AD ++LL
Sbjct: 71 SSAEELIKI-----NPAIKILSSPVQISFSTSKHIVQRAANRAPADEQNSLSTDNHILLF 125
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
TI TD R ++++ ++ + ++G V +I F K+ QA+V+F + + A AK L+G
Sbjct: 126 TIYDTD-RPITVETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGAD 183
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 212
I P G CTL++ Y+ L+V + D+
Sbjct: 184 I----FP---GCCTLKVDYARPARLTVPRNDQDNWDF 213
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 37/225 (16%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V I G V +DV+ VF +G + + + QALV+F D SSA+ +
Sbjct: 26 VVHIRGLPRHSVELDVVK-VFQPYGRIRDVAMMPQKN--QALVEFEDI---SSAEELIKI 79
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
+ L P + + S H V+ ++R AP+ D LS
Sbjct: 80 NPAIKIL----SSPVQISFSTSKHI---VQRAANR-----------APA--DEQNSLST- 118
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
++++LL +I + +T++ ++ + ++G V +I +F K +QA++++ ++
Sbjct: 119 --------DNHILLFTIYDTDRPITVETIYRITFSYGNVLRIVIFRK-SQVQAMVEFGNI 169
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
Q A AK L G I+ G C L + Y+R L++ N+ + D+
Sbjct: 170 QEARKAKLHLNGADIF-PGCCTLKVDYARPARLTVPRNDQDNWDF 213
>gi|386768319|ref|NP_001246429.1| smooth, isoform U [Drosophila melanogaster]
gi|383302602|gb|AFH08182.1| smooth, isoform U [Drosophila melanogaster]
Length = 515
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 63 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 121
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + ++ +
Sbjct: 122 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPIK 180
Query: 350 PSILGQQPV---PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPP 396
G+ P+ P+ G Y+ + F+ P + QP G GA P
Sbjct: 181 EIGNGRSPLLQEPLYGTRPQPYSKSLFSIPENVVMLESQPPLLGPGAAFP 230
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 22/178 (12%)
Query: 89 VYLQYSNRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGF 139
V++ N+Q+ + NK+ D+ ++LL TI +++DVLH + G
Sbjct: 45 VHMHARNQQQALMNKSNDDLRRKRPETTRPNHILLFTII-NPFYPITVDVLHKICHPHGQ 103
Query: 140 VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 199
V +I F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+
Sbjct: 104 VLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEK 155
Query: 200 LSV-KFQSHRSRDY---TNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENM 253
L+V K + S DY T LP+ S L L G + +P S L + EN+
Sbjct: 156 LNVYKNEPDTSWDYTLSTGEILPIKEIGNGRSPLLQEPLYGTRPQPYSKSLFSIPENV 213
>gi|195487089|ref|XP_002091762.1| GE13838 [Drosophila yakuba]
gi|194177863|gb|EDW91474.1| GE13838 [Drosophila yakuba]
Length = 491
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 19/165 (11%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + + S
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGKSLFSI 185
Query: 350 PS---ILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P +L QP P++G GA F PP P H T W
Sbjct: 186 PENVVMLESQP-PLLGP------GAAF--PPFGAPEYHPTTPENW 221
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + G V +I F+K G QA+V+F + + A+ A+ L+G I
Sbjct: 94 ITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------Y 145
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I Y+ L+V K + S DYT
Sbjct: 146 AGCCTLKIDYAKPEKLNVYKNEPDTSWDYT 175
>gi|226470154|emb|CAX70358.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 474
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S+VLHLR LP + +E E+ L PFG + N + QA +E L A +M Y
Sbjct: 40 PESRVLHLRGLPPDVSESEVAMLAIPFGSIANMI--LTRKSCQALVEMDTLESAESMFGY 97
Query: 75 YASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI------ 127
Y + P +RGK + +Q+S + N T N L IE + + V+
Sbjct: 98 YMTVCTP-NLRGKYPIEMQFSKYSSLTNATT-----NNATLSAIEEANKQFVTFRCENED 151
Query: 128 ---DVLHL------------------VFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
VLH+ F FG + ++ +F+K A ++FS++ +A
Sbjct: 152 SPKTVLHIHVEKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHV 211
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P L P LR +S + L + + + SRD+ NP+
Sbjct: 212 AKLLMNG--VP--LFPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNPW 258
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHISYS 321
M F FG + ++ F KN A +++ + +A VAK + G ++ + F L +S
Sbjct: 177 MAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPLFPMECNFHILRTEFS 236
Query: 322 RHTDLSIKVNNDRSRDY 338
R + L I ++ SRD+
Sbjct: 237 RQSTLEIHREDNSSRDF 253
>gi|76157413|gb|AAX28348.2| SJCHGC04555 protein [Schistosoma japonicum]
Length = 304
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S+VLHLR LP + +E E+ L PFG + N + QA +E L A +M Y
Sbjct: 40 PESRVLHLRGLPPDVSESEVAMLAIPFGSIANMI--LTRKSCQALVEMDTLESAESMFGY 97
Query: 75 YASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI------ 127
Y + P +RGK + +Q+S + N T N L IE + + V+
Sbjct: 98 YMTVCTP-NLRGKYPIEMQFSKYSSLTNATT-----NNATLSAIEEANKQFVTFRCENED 151
Query: 128 ---DVLH------------------LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
VLH + F FG + ++ +F+K A ++FS++ +A
Sbjct: 152 SPKTVLHIHVEKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHV 211
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P L P LR +S + L + + + SRD+ NP+
Sbjct: 212 AKLLMNG--VP--LFPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNPW 258
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHISYS 321
M F FG + ++ F KN A +++ + +A VAK + G ++ + F L +S
Sbjct: 177 MAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPLFPMECNFHILRTEFS 236
Query: 322 RHTDLSIKVNNDRSRDY 338
R + L I ++ SRD+
Sbjct: 237 RQSTLEIHREDNSSRDF 253
>gi|226481681|emb|CAX73738.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 518
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 26/217 (11%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+P+ PS V+H+R LP E +++++ +P+G++ + + +NQA +EF D+
Sbjct: 13 SRPEDWGEIDPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVA--MMPQKNQALVEFEDI 70
Query: 66 NQAIAMISYYASSSEPA-QVRGKTVYLQYSNRQEIVN---NKTTAD------VAGNVLLV 115
+ A +I PA ++ V + +S + IV N+ AD ++LL
Sbjct: 71 SSAEELIKI-----NPAIKILSSPVQISFSTSKHIVQRAANRAPADEQNSLSTDNHILLF 125
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
TI TD R ++++ ++ + ++G V +I F K+ QA+V+F + + A AK L+G
Sbjct: 126 TIYDTD-RPITVETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGAD 183
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 212
I P G CTL++ Y+ L+V + D+
Sbjct: 184 I----FP---GCCTLKVDYARPARLTVPRNDQDNWDF 213
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
L ++++LL +I + +T++ ++ + ++G V +I +F K +QA++++ ++Q A
Sbjct: 116 LSTDNHILLFTIYDTDRPITVETIYRITFSYGNVLRIVIFRK-SQVQAMVEFGNIQEARK 174
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
AK L G I+ G C L + Y+R L++ N+ + D+
Sbjct: 175 AKLHLNGADIF-PGCCTLKVDYARPARLTVPRNDQDNWDF 213
>gi|226489713|emb|CAX75007.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 583
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S+VLHLR LP + +E E+ L PFG + N + QA +E L A +M Y
Sbjct: 40 PESRVLHLRGLPPDVSESEVAMLAIPFGSIANMI--LTRKSCQALVEMDTLESAESMFGY 97
Query: 75 YASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI------ 127
Y + P +RGK + +Q+S + N T N L IE + + V+
Sbjct: 98 YMTVCTP-NLRGKYPIEMQFSKYSSLTNATT-----NNATLSAIEEANKQFVTFRCENED 151
Query: 128 ---DVLHL------------------VFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
VLH+ F FG + ++ +F+K A ++FS++ +A
Sbjct: 152 SPKTVLHIHVEKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHG 211
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P L P LR +S + L + + + SRD+ NP+
Sbjct: 212 AKLLMNG--VP--LFPMEYNFHILRTEFSRQSTLEIHREDNSSRDFVQNPW 258
>gi|226467722|emb|CAX69737.1| Heterogeneous nuclear ribonucleoprotein L [Schistosoma japonicum]
Length = 562
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 26/217 (11%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+P+ PS V+H+R LP E +++++ +P+G++ + + +NQA +EF D+
Sbjct: 13 SRPEDWGEIDPSPVVHIRGLPRHSVELDVVKVFQPYGRIRDVA--MMPQKNQALVEFEDI 70
Query: 66 NQAIAMISYYASSSEPA-QVRGKTVYLQYSNRQEIVN---NKTTAD------VAGNVLLV 115
+ A +I PA ++ V + +S + IV N+ AD ++LL
Sbjct: 71 SSAEELIKI-----NPAIKILSSPVQISFSTSKHIVQRAANRAPADEQNSLSTDNHILLF 125
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
TI TD R ++++ ++ + ++G V +I F K+ QA+V+F + + A AK L+G
Sbjct: 126 TIYDTD-RPITVETIYRITFSYGNVLRIVIFRKSQ-VQAMVEFGNIQEARKAKLHLNGAD 183
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 212
I P G CTL++ Y+ L+V + D+
Sbjct: 184 I----FP---GCCTLKVDYARPARLTVPRNDQDNWDF 213
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
L ++++LL +I + +T++ ++ + ++G V +I +F K +QA++++ ++Q A
Sbjct: 116 LSTDNHILLFTIYDTDRPITVETIYRITFSYGNVLRIVIFRK-SQVQAMVEFGNIQEARK 174
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
AK L G I+ G C L + Y+R L++ N+ + D+
Sbjct: 175 AKLHLNGADIF-PGCCTLKVDYARPARLTVPRNDQDNWDF 213
>gi|119601314|gb|EAW80908.1| hCG41678, isoform CRA_a [Homo sapiens]
Length = 183
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL +EN+ Y TLDVLH +FS FG V+ I F K+ QAL+QY D + A K
Sbjct: 6 QSLVLRIIVENLFYPTTLDVLHQIFSKFGTVKTIT-FIKDNQFQALLQYTDPENAQHTKL 64
Query: 302 ALEGHCIYDGGFC-KLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
+L+ Y+ C L I +S+ L++K NND+SRDY + P
Sbjct: 65 SLDWQNTYNA--CHTLCIDFSKLISLNVKYNNDKSRDYHARTCP 106
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
++DVLH +FS FG V K TF K FQAL+Q++D E A K +LD ++
Sbjct: 21 TTLDVLHQIFSKFGTV-KTITFIKDNQFQALLQYTDPENAQHTKLSLDWQN--------T 71
Query: 185 MGPC-TLRITYSAHTDLSVKFQSHRSRDY 212
C TL I +S L+VK+ + +SRDY
Sbjct: 72 YNACHTLCIDFSKLISLNVKYNNDKSRDY 100
>gi|290975622|ref|XP_002670541.1| predicted protein [Naegleria gruberi]
gi|284084101|gb|EFC37797.1| predicted protein [Naegleria gruberi]
Length = 918
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 48/238 (20%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGK----PFGKVVNTK--CNVGANRNQ----------A 58
PPSKVL NLP C + EL+E F KV K G NR+ A
Sbjct: 207 PPSKVLLFSNLPPNCQKSELLEFDTFNECKFQKVFLFKQPAPSGPNRHNNKKRKRDGYLA 266
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI----------VN------- 101
F+EF + +A + + + ++R +T YL++S +Q++ VN
Sbjct: 267 FVEFESVEKAQMFLDKFEG--QKIKIRNRTAYLKFSEKQQLEGTPGGLTMNVNEDLNTVP 324
Query: 102 -NKTTADVA-GNVLLVTIEGTDARL--VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+KT + ++ +T D +++D+L +FS FG + KI F K Q+LVQ
Sbjct: 325 VSKTVVNTNNATIIHITFTHCDEYNYPLNVDLLFNLFSKFGTIEKINIFIKNELTQSLVQ 384
Query: 158 F-SDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS--AHTDLSVKFQSHRSRDY 212
F SDTE A+ A ++G ++ PE M + I +S + +L +K +HR+RDY
Sbjct: 385 FKSDTE-ATEAVKEMEG----VFVYPE-MKLYRMNIQFSKKSREELLIKETNHRNRDY 436
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
+ + Y + +D+L +FS FG ++KI +F KN Q+L+Q+ A A + +E
Sbjct: 340 ITFTHCDEYNYPLNVDLLFNLFSKFGTIEKINIFIKNELTQSLVQFKSDTEATEAVKEME 399
Query: 305 GHCIY-DGGFCKLHISYSRHT--DLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 361
G +Y + +++I +S+ + +L IK N R+RDY + PM Q+P
Sbjct: 400 GVFVYPEMKLYRMNIQFSKKSREELLIKETNHRNRDYVV--HPM-------RSQKPYDGS 450
Query: 362 GATANQYNGA----QFAPPPPE 379
G++ N +APPP +
Sbjct: 451 GSSMRYNNNTPSNNHYAPPPED 472
>gi|226489711|emb|CAX75006.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 351
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 102/231 (44%), Gaps = 41/231 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S+VLHLR LP + +E E+ L PFG + N + QA +E L A +M Y
Sbjct: 40 PESRVLHLRGLPPDVSESEVAMLAIPFGSIANMI--LTRKSCQALVEMDTLESAESMFGY 97
Query: 75 YASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI------ 127
Y + P +RGK + +Q+S + N T N L IE + + V+
Sbjct: 98 YMTVCTP-NLRGKYPIEMQFSKYSSLTNATT-----NNATLSAIEEANKQFVTFRCENED 151
Query: 128 ---DVLHL------------------VFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
VLH+ F FG + ++ +F+K A ++FS++ +A
Sbjct: 152 SPKTVLHIHVEKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHV 211
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P L P LR +S + L + + + SRD+ NP+
Sbjct: 212 AKLLMNG--VP--LFPMEYNFHILRTEFSRQSTLEIHREDNSSRDFVQNPW 258
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHISYS 321
M F FG + ++ F KN A +++ + +A VAK + G ++ + F L +S
Sbjct: 177 MAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPLFPMEYNFHILRTEFS 236
Query: 322 RHTDLSIKVNNDRSRDY 338
R + L I ++ SRD+
Sbjct: 237 RQSTLEIHREDNSSRDF 253
>gi|389584747|dbj|GAB67479.1| polypyrimidine tract binding protein [Plasmodium cynomolgi strain
B]
Length = 746
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 301
S V+L S+ N+ Y V +++++ +FS G V+KI F +N + QAL+Q+P+++TA A +
Sbjct: 399 SRVILVSVLNLHYPVDIELIYYLFSKCGTVEKIITFSRNPLIYQALVQFPNIETAQEAIK 458
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYT 339
L IYDG C + I YS +L +K NN SRDYT
Sbjct: 459 TLHNRNIYDG--CNTIQIQYSFLKELVVKANNSSSRDYT 495
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V I++++ +FS G V KI TF + +QALVQF + ETA A L R+I
Sbjct: 413 VDIELIYYLFSKCGTVEKIITFSRNPLIYQALVQFPNIETAQEAIKTLHNRNIYD----- 467
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-------GLDG 236
G T++I YS +L VK + SRDYT + + ++ V G D
Sbjct: 468 --GCNTIQIQYSFLKELVVKANNSSSRDYTAANMTKNKNLLNFQTSHGVLPTPTRKGNDS 525
Query: 237 K---KLEPESNVLLASIEN-------MQYAVTLDV-----LHMVFSAFGPVQKIAMFDKN 281
+ LE + ++ +N + Y + D L +FS +G V +I + +
Sbjct: 526 ELYLMLERKFKLVDFDAKNTSKTPVLICYNIPKDYTDVHKLFNLFSVYGFVSRIKILREK 585
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
ALIQY A VA+E L+ + D L + +S+ D+ I
Sbjct: 586 PD-SALIQYAGYLFASVAQECLQHAKVGDQV---LELHFSKILDIRI 628
>gi|354507573|ref|XP_003515830.1| PREDICTED: polypyrimidine tract-binding protein 1-like, partial
[Cricetulus griseus]
Length = 217
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R+LP + TE ++I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSTGVPSRVIHVRSLPSDVTEGKVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
M++YY S + P +RG+ +YLQ+SN +E+
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYLQFSNHKEL 135
>gi|226470156|emb|CAX70359.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 415
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 41/231 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S+VLHLR LP + +E E+ L PFG + N + QA +E L A +M Y
Sbjct: 40 PESRVLHLRGLPPDVSESEVAMLAIPFGSIANMI--LTRKSCQALVEMDTLESAESMFGY 97
Query: 75 YASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI------ 127
Y + P +RGK + Q+S + N T N L IE + + V+
Sbjct: 98 YMTVCTP-NLRGKYPIETQFSKYSSLTNATT-----NNATLSAIEEANKQFVTFRCENED 151
Query: 128 ---DVLHL------------------VFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
VLH+ F FG + ++ +F+K A ++FS++ +A
Sbjct: 152 SPKTVLHIHVEKSYNPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHV 211
Query: 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P L P LR +S + L + + + SRD+ NP+
Sbjct: 212 AKLLMNG--VP--LFPMECNFHILRTEFSRQSTLEIHREDNSSRDFVQNPW 258
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 26/208 (12%)
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT--LRITY 194
FG + + K+ QALV+ E+A S + M CT LR Y
Sbjct: 66 FGSIANMILTRKSC--QALVEMDTLESAES-------------MFGYYMTVCTPNLRGKY 110
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ 254
T S K+ S + N L SAI+ + + V + + VL +E
Sbjct: 111 PIETQFS-KYSSLTNATTNNATL----SAIEEANKQFVTFRCENEDSPKTVLHIHVEKSY 165
Query: 255 YAVTLDVL--HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--D 310
+ + L M F FG + ++ F KN A +++ + +A VAK + G ++ +
Sbjct: 166 NPMEIGYLPFFMAFKPFGRILRVVSFKKNDSRHAFLEFSNSLSAHVAKLLMNGVPLFPME 225
Query: 311 GGFCKLHISYSRHTDLSIKVNNDRSRDY 338
F L +SR + L I ++ SRD+
Sbjct: 226 CNFHILRTEFSRQSTLEIHREDNSSRDF 253
>gi|326430347|gb|EGD75917.1| polypyrimidine tract-binding protein 1 isoform d [Salpingoeca sp.
ATCC 50818]
Length = 496
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 13/125 (10%)
Query: 237 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
+ P S L+A + N+ Y+++L LH +FS G V K+ F K LQAL+Q +A
Sbjct: 113 RDTNPPSKCLIAKVTNLSYSISLQTLHSLFSRAGRVDKMVCFMKQSFLQALVQMDSEASA 172
Query: 297 VVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND--RSRDY---------TLPSTPM 345
+A+ L IY G C L + +S+ +++++ ++D R+RD+ TLP+TP
Sbjct: 173 ALARRMLNNQDIY-SGCCHLAVEFSKLNEVTVRQDSDPARARDFIRSPLMDGETLPNTP- 230
Query: 346 VNSQP 350
+N QP
Sbjct: 231 INLQP 235
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRN-QAFIEFADLNQAI 69
R PS+V+H+RNLP T +L+ P T NV N QA +E + A
Sbjct: 26 RMAAKPSRVIHIRNLPDSATAADLL----PHLMKYATPSNVIMMTNKQALVEMPSVEVAS 81
Query: 70 AMISYYASSSEPA-QVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSID 128
+I SEP ++R YLQ+S QE+ +T + L+ + +S+
Sbjct: 82 RVID-----SEPTIRIRDSQAYLQFSEHQELERVQTRDTNPPSKCLIAKVTNLSYSISLQ 136
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
LH +FS G V K+ F K + QALVQ +A+ A+ L+ + I G C
Sbjct: 137 TLHSLFSRAGRVDKMVCFMKQSFLQALVQMDSEASAALARRMLNNQDIYS-------GCC 189
Query: 189 TLRITYSAHTDLSVKFQSH--RSRDY 212
L + +S +++V+ S R+RD+
Sbjct: 190 HLAVEFSKLNEVTVRQDSDPARARDF 215
>gi|281363805|ref|NP_001027439.2| smooth, isoform H [Drosophila melanogaster]
gi|40882465|gb|AAR96144.1| RE74969p [Drosophila melanogaster]
gi|272432576|gb|AAZ52803.2| smooth, isoform H [Drosophila melanogaster]
Length = 480
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 24/162 (14%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL ST + +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL-STGEILPK 184
Query: 350 PSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P +LG GA F PP P H T W
Sbjct: 185 PPLLGP--------------GAAF--PPFGAPEYHTTTPENW 210
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|403370184|gb|EJY84954.1| Polypyrimidine tract binding protein, putative [Oxytricha
trifallax]
Length = 734
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 101/225 (44%), Gaps = 37/225 (16%)
Query: 15 PPSKVLHLRNLPWECTEEELIE-LGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
P+KVL LRNLP + TE+EL+ L +G V K + + AFI+F L A
Sbjct: 351 KPTKVLFLRNLPKDVTEQELMRVLSYQYGFV--EKVLIMIQKAHAFIQFDSLETATKQ-- 406
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHL 132
+QE N+ D VLLV+I T+ + V+ DVL
Sbjct: 407 ----------------------QQESEVNQPLQD--SKVLLVSI--TNIKYPVNADVLFT 440
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+F +G +I F + G QALV+F E A K LDG+ + P N+ ++I
Sbjct: 441 IFQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKLLLDGQGMYGVSQPANV----MKI 496
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL-PVAPSAIDASGQLSVGLDG 236
+S L + Q+ ++RD+T + + ID G LS+ D
Sbjct: 497 QFSELQKLEINTQTLKARDFTKQTVGSFVQNQIDKQGDLSINKDD 541
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VLL SI N++Y V DVL +F +G Q+I +F + G QAL+++ + A K
Sbjct: 418 DSKVLLVSITNIKYPVNADVLFTIFQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKL 477
Query: 302 ALEGHCIYDGGFCK----LHISYSRHTDLSIKVNNDRSRDYT 339
L+G +Y G + + I +S L I ++RD+T
Sbjct: 478 LLDGQGMY--GVSQPANVMKIQFSELQKLEINTQTLKARDFT 517
>gi|386768317|ref|NP_001246428.1| smooth, isoform T [Drosophila melanogaster]
gi|383302601|gb|AFH08181.1| smooth, isoform T [Drosophila melanogaster]
Length = 552
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + + +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTVKEIGNG 185
Query: 350 PSILGQQPV 358
S L Q+P+
Sbjct: 186 RSPLLQEPL 194
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|354508326|ref|XP_003516204.1| PREDICTED: polypyrimidine tract-binding protein 1-like, partial
[Cricetulus griseus]
Length = 214
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 37/168 (22%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R+LP + T+ E+I LG PFGKV N G +NQ FIE A
Sbjct: 51 RSTGVPSRVIHVRSLPSDVTDGEVISLGLPFGKVTNLLMLKG--KNQPFIEMNTEEVANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL------ 124
M++YY S + P +RG+ +YLQ+SN +E+ + + L + +R
Sbjct: 109 MVNYYMSLA-PV-LRGQPIYLQFSNHKELKTDNSPHHARAQAALQAVNSVHSRNLALAAS 166
Query: 125 ---------------------------VSIDVLHLVFSAFGFVHKITT 145
V++DVL+ +FS FG V KI T
Sbjct: 167 AAAVDAGMAMAGQSPVLRVLVENLFYPVTLDVLNQIFSKFGTVVKIIT 214
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
G + +S VL +EN+ Y VTLDVL+ +FS FG V KI
Sbjct: 173 GMAMAGQSPVLRVLVENLFYPVTLDVLNQIFSKFGTVVKI 212
>gi|156100793|ref|XP_001616090.1| polypyrimidine tract binding protein [Plasmodium vivax Sal-1]
gi|148804964|gb|EDL46363.1| polypyrimidine tract binding protein, putative [Plasmodium vivax]
Length = 747
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 76/126 (60%), Gaps = 9/126 (7%)
Query: 217 LPVAPSAIDASGQLSVGLDGKKLEPESN-VLLASIENMQYAVTLDVLHMVFSAFGPVQKI 275
+P A A++ + + + GK+ + ES+ V+L S+ N+ Y V +++++ +FS G V+KI
Sbjct: 377 VPSAKDALEGANKKT----GKQNKNESSRVILVSVLNLHYPVDIELIYYLFSKCGTVEKI 432
Query: 276 AMFDKNGGL-QALIQYPDVQTAVVAKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNND 333
F +N + QAL+Q+ +++TA A + L IYDG C + I YS +L +K NN
Sbjct: 433 ITFSRNPLIYQALVQFQNIETAQEAIKTLHNRNIYDG--CNTIQIQYSFLKELVVKANNS 490
Query: 334 RSRDYT 339
SRDYT
Sbjct: 491 SSRDYT 496
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V I++++ +FS G V KI TF + +QALVQF + ETA A L R+I
Sbjct: 414 VDIELIYYLFSKCGTVEKIITFSRNPLIYQALVQFQNIETAQEAIKTLHNRNIYD----- 468
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-------GLDG 236
G T++I YS +L VK + SRDYT L + ++ V G D
Sbjct: 469 --GCNTIQIQYSFLKELVVKANNSSSRDYTATNLGKNKNLLNFQTSHGVLPTPTRKGNDS 526
Query: 237 K---KLEPESNVLLASIEN-------MQYAVTLDV-----LHMVFSAFGPVQKIAMFDKN 281
+ LE + ++ +N + Y + D L +FS +G V +I + +
Sbjct: 527 ELYLMLERKFKLVDFDAKNTSKTPVLICYNIPKDYTDVHKLFNLFSVYGFVSRIKILREK 586
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
ALIQY A VA+E L+ + D L + +S+ D+ I
Sbjct: 587 PD-SALIQYAGYLFASVAQECLQHAKVGDQ---VLELHFSKILDIRI 629
>gi|397485367|ref|XP_003813820.1| PREDICTED: polypyrimidine tract-binding protein 1 [Pan paniscus]
Length = 783
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 406 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 463
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKT-TADVAGNVLLVTIEGTDAR--LVSIDVLHL 132
S + +RG+ +Y+Q+SN +E+ + + V G V + GT V HL
Sbjct: 464 TSVT--PVLRGQPIYIQFSNHKELKTDSSPNQAVRGPVADPSSPGTSGVGPAAGAGVSHL 521
Query: 133 VFSAFGFV 140
A G +
Sbjct: 522 FLGAPGII 529
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 586 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 642
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 643 MSHLNGHKL--HGKP-------IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 693
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ + L ++FS+ G V K F + AL
Sbjct: 694 GSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 747
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 748 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 782
>gi|253722484|pdb|2AD9|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd1 Complexed With Cucucu Rna
Length = 119
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 87
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
S + P +RG+ +Y+Q+SN +E+
Sbjct: 88 TSVT-PV-LRGQPIYIQFSNHKEL 109
>gi|386768311|ref|NP_001246426.1| smooth, isoform M [Drosophila melanogaster]
gi|383302598|gb|AFH08179.1| smooth, isoform M [Drosophila melanogaster]
Length = 497
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 23/170 (13%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPM---- 345
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPIK 185
Query: 346 -VNSQPSILGQQPV---PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
+ + S L Q+P+ P++G GA F PP P H T W
Sbjct: 186 EIGNGRSPLLQEPLYEPPLLGP------GAAF--PPFGAPEYHTTTPENW 227
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|386768313|ref|NP_001246427.1| smooth, isoform O [Drosophila melanogaster]
gi|383302599|gb|AFH08180.1| smooth, isoform O [Drosophila melanogaster]
Length = 494
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 87/170 (51%), Gaps = 24/170 (14%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + ++ S+
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPSK 185
Query: 350 P--------SILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
+L QP P++G GA F PP P H T W
Sbjct: 186 SLFSIPENVVMLESQP-PLLGP------GAAF--PPFGAPEYHTTTPENW 226
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|55669743|pdb|1SJQ|A Chain A, Nmr Structure Of Rrm1 From Human Polypyrimidine Tract
Binding Protein Isoform 1 (Ptb1)
Length = 105
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A M++YY
Sbjct: 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYY 72
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI 99
S + P +RG+ +Y+Q+SN +E+
Sbjct: 73 TSVT-PV-LRGQPIYIQFSNHKEL 94
>gi|403358967|gb|EJY79143.1| Polypyrimidine tract binding protein, putative [Oxytricha
trifallax]
Length = 479
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 15 PPSKVLHLRNLPWECTEEELIE-LGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
P+KVL LRNLP + TE+EL+ L +G V K + + AFI+F L A
Sbjct: 96 KPTKVLFLRNLPKDVTEQELMRVLSYQYGFV--EKVLIMIQKAHAFIQFDSLETAT---- 149
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHL 132
+QE N+ D VLLV+I T+ + V+ DVL
Sbjct: 150 --------------------KQQQESEVNQPLQD--SKVLLVSI--TNIKYPVNADVLFT 185
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+F +G +I F + G QALV+F E A K LDG+ + P N+ ++I
Sbjct: 186 IFQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKLLLDGQGMYGVSQPANV----MKI 241
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL-PVAPSAIDASGQLSVGLD 235
+S L + Q+ ++RD+T + + ID G LS+ D
Sbjct: 242 QFSELQKLEINTQTLKARDFTKQTVGSFVQNQIDKQGDLSINKD 285
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VLL SI N++Y V DVL +F +G Q+I +F + G QAL+++ + A K
Sbjct: 163 DSKVLLVSITNIKYPVNADVLFTIFQKYGDPQRIVIFPRQQGEQALVEFQTFEQAKKVKL 222
Query: 302 ALEGHCIYDGGFCK----LHISYSRHTDLSIKVNNDRSRDYT 339
L+G +Y G + + I +S L I ++RD+T
Sbjct: 223 LLDGQGMY--GVSQPANVMKIQFSELQKLEINTQTLKARDFT 262
>gi|291224827|ref|XP_002732404.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Saccoglossus kowalevskii]
Length = 423
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
DV+H + + FGPVQ+I +F KN G+Q +I+YP + +A AK +L G IY G C L I
Sbjct: 104 DVMHTICNPFGPVQRIVIFKKN-GVQTMIEYPLIYSASRAKASLNGADIY-SGCCTLKIE 161
Query: 320 YSRHTDLSIKVNNDRSRDYTLPS 342
Y+R T L++ N++ + DYT P+
Sbjct: 162 YARPTRLNVYKNDNETYDYTNPT 184
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 61/203 (30%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS V+H+R L E +L+E + FG + + + + QA IEF D
Sbjct: 44 PPSPVVHVRGLSDTVIEADLVEAVQHFGPI--SYVIMMPRKRQALIEFED---------- 91
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
+ G + Y+ DV+H +
Sbjct: 92 ---------IEGAKACVNYAQ--------------------------------DVMHTIC 110
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
+ FG V +I F+K G Q ++++ +AS AK +L+G I G CTL+I Y
Sbjct: 111 NPFGPVQRIVIFKKN-GVQTMIEYPLIYSASRAKASLNGADIYS-------GCCTLKIEY 162
Query: 195 SAHTDLSVKFQSHRSRDYTNPYL 217
+ T L+V + + DYTNP L
Sbjct: 163 ARPTRLNVYKNDNETYDYTNPTL 185
>gi|222619594|gb|EEE55726.1| hypothetical protein OsJ_04208 [Oryza sativa Japonica Group]
Length = 309
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PSKV+H+RN+ E +E EL+++ +PFG V K + +NQA ++ DL A+ +I YY
Sbjct: 4 PSKVIHIRNVGHEISESELLQVVQPFGTV--AKLVMLRAKNQALVQMEDLASAVNVIQYY 61
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTT 105
++ +P+ VRG+ VYLQYS+ QE+ ++++
Sbjct: 62 -NTIQPS-VRGRNVYLQYSSHQELTTDQSS 89
>gi|17136488|ref|NP_476731.1| smooth, isoform A [Drosophila melanogaster]
gi|78707266|ref|NP_001027440.1| smooth, isoform E [Drosophila melanogaster]
gi|1321808|emb|CAA66282.1| smooth [Drosophila melanogaster]
gi|7302450|gb|AAF57535.1| smooth, isoform A [Drosophila melanogaster]
gi|71911687|gb|AAZ52802.1| smooth, isoform E [Drosophila melanogaster]
Length = 475
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 29/162 (17%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 349
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + P
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTEP----- 180
Query: 350 PSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
P++G GA F PP P H T W
Sbjct: 181 ---------PLLGP------GAAF--PPFGAPEYHTTTPENW 205
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|148699702|gb|EDL31649.1| mCG13402, isoform CRA_f [Mus musculus]
Length = 257
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 78 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 135
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
M++YY S + +RG+ +Y+Q+SN +E+
Sbjct: 136 MVNYYTSVAP--VLRGQPIYIQFSNHKEL 162
>gi|195335919|ref|XP_002034610.1| GM19821 [Drosophila sechellia]
gi|194126580|gb|EDW48623.1| GM19821 [Drosophila sechellia]
Length = 237
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + GPV +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGPVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTL 340
++ A A+E L G IY G C L I Y++ L++ N D S DYTL
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL 176
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGPVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYTNPYLPVAPSAI 224
+ S DYT + PSA
Sbjct: 167 EPDTSWDYTLSTGEILPSAF 186
>gi|351695246|gb|EHA98164.1| Heterogeneous nuclear ribonucleoprotein L [Heterocephalus glaber]
Length = 539
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 101 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 160
Query: 274 KIAMFDKNGGLQALIQYPDVQ-TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN 332
+I +F KN G+QA+++YP ++ +A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 161 RIVIFRKN-GVQAMVEYPLLRNSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKND 218
Query: 333 DRSRDYTLPS 342
+ DYT P+
Sbjct: 219 QDTWDYTNPN 228
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P S V+H+R L E +L+E + FG + + V + QA +EF D+ A ++Y
Sbjct: 37 PASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNAVNY 94
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDVLHL 132
A + + G ++ YS Q+I + D +VLL TI ++ DVL+
Sbjct: 95 AADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDVLYT 151
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTE-TASSAKNALDGRSIPRYLLPENMGPCTLR 191
+ + G V +I F K G QA+V++ +A AK +L+G I G CTL+
Sbjct: 152 ICNPCGPVQRIVIFRKN-GVQAMVEYPLLRNSAQRAKASLNGADIYS-------GCCTLK 203
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYL 217
I Y+ T L+V + DYTNP L
Sbjct: 204 IEYAKPTRLNVFKNDQDTWDYTNPNL 229
>gi|301777342|ref|XP_002924098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Ailuropoda melanoleuca]
Length = 281
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 31/205 (15%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 101 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 156
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
++ EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 157 --AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 213
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V ++ F A AK AL+G I G CTL+I
Sbjct: 214 VCNPVGKVQQLM-------------FESVLCAQKAKAALNGADI-------YAGCCTLKI 253
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 254 EYARPTRLNVIRNDNDSWDYTKPYL 278
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ++ MF+ V A AK A
Sbjct: 192 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQQL-MFE------------SVLCAQKAKAA 238
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 239 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 276
>gi|328724092|ref|XP_001949062.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Acyrthosiphon pisum]
Length = 428
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 235 DGKKLEPES---NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
DG++ E+ ++LL +I + Y + DV+H + G V +I +F K G +QA+++Y
Sbjct: 42 DGRRKNAETQPNHILLLTITKVTYPINTDVIHTISKDHGNVMRIVIFRKRG-VQAMVEYE 100
Query: 292 DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
+V+ A+ AK+ ++G IY G C L + Y++ + L++ N+ + DYT P+
Sbjct: 101 EVEQAIRAKQLMDGADIYQGC-CTLRVEYAKPSKLNVYKNDSETWDYTTPN 150
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171
+LL+TI ++ DV+H + G V +I F K G QA+V++ + E A AK +
Sbjct: 55 ILLLTITKV-TYPINTDVIHTISKDHGNVMRIVIFRK-RGVQAMVEYEEVEQAIRAKQLM 112
Query: 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
DG I + G CTLR+ Y+ + L+V + DYT P
Sbjct: 113 DGADIYQ-------GCCTLRVEYAKPSKLNVYKNDSETWDYTTP 149
>gi|195056920|ref|XP_001995181.1| GH22768 [Drosophila grimshawi]
gi|193899387|gb|EDV98253.1| GH22768 [Drosophila grimshawi]
Length = 482
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 7/115 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + + G V +I +F KN G+QA++++
Sbjct: 75 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEF 133
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI-KVNNDRSRDYTLPSTP 344
++ +A A+E L G IY G C L I +++ L++ K +D S DYTL + P
Sbjct: 134 DNLDSATRARENLNGADIY-AGCCTLKIDFAKPEKLNVYKNESDTSWDYTLSTEP 187
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + + G V +I F+K G QA+V+F + ++A+ A+ L+G I
Sbjct: 101 ITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDNLDSATRARENLNGADI-------Y 152
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I ++ L+V K +S S DYT
Sbjct: 153 AGCCTLKIDFAKPEKLNVYKNESDTSWDYT 182
>gi|195431604|ref|XP_002063826.1| GK15699 [Drosophila willistoni]
gi|194159911|gb|EDW74812.1| GK15699 [Drosophila willistoni]
Length = 478
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + + G V +I +F KN G+QA++++
Sbjct: 71 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEF 129
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTP 344
+ A A+E L G IY G C L I Y++ L++ N D S DYTL + P
Sbjct: 130 DSLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTEP 183
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + + G V +I F+K G QA+V+F + A+ A+ L+G I
Sbjct: 97 ITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARENLNGADI-------Y 148
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I Y+ L+V K + S DYT
Sbjct: 149 AGCCTLKIDYAKPEKLNVYKNEPDTSWDYT 178
>gi|350854988|emb|CAZ32696.2| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 522
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 24/206 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS V+H+R LP E ++++ + +G++ + + + QA +EF D++ A A+I
Sbjct: 23 PSPVVHVRGLPRHSVEFDVVKAFESYGRIRDV--TMMPQKKQALVEFEDISSAEALI--- 77
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIV---------NNKTTADVAGNVLLVTIEGTDARLVS 126
+ ++ V + +S + IV + +++ ++LL TI TD R ++
Sbjct: 78 -ERNPEVKILNSLVQISFSTSKHIVQRAANRVPTDEQSSLSADNHILLFTIYDTD-RPIT 135
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
++ ++ + ++G V +I F K+ QA+V+F + A +AK L+G I P G
Sbjct: 136 VETIYRITFSYGSVLRIVIFRKSQ-VQAMVEFGSVQEARNAKLHLNGADI----FP---G 187
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDY 212
CTL++ Y+ LSV + D+
Sbjct: 188 CCTLKVDYARPARLSVPRNDQDNWDF 213
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+V + G V DV+ F ++G + +T + QALV+F D +A AL
Sbjct: 26 VVHVRGLPRHSVEFDVVK-AFESYGRIRDVTMMPQKK--QALVEFEDISSAE----ALIE 78
Query: 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
R+ +L ++I++S + + A + + Q S+
Sbjct: 79 RNPEVKILNS-----LVQISFSTSKHIVQR----------------AANRVPTDEQSSLS 117
Query: 234 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
D +++LL +I + +T++ ++ + ++G V +I +F K +QA++++ V
Sbjct: 118 AD-------NHILLFTIYDTDRPITVETIYRITFSYGSVLRIVIFRK-SQVQAMVEFGSV 169
Query: 294 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY-TLPSTPMVNSQ 349
Q A AK L G I+ G C L + Y+R LS+ N+ + D+ P N Q
Sbjct: 170 QEARNAKLHLNGADIFPGC-CTLKVDYARPARLSVPRNDQDNWDFEKCERDPFCNFQ 225
>gi|339233762|ref|XP_003381998.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316979122|gb|EFV61952.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 820
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 37/216 (17%)
Query: 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
S Q+ PPS+VL +RNL E +L++ PFG V +R A +EF
Sbjct: 38 SMHDQYGAQNPPSRVLLVRNLMDNVVEADLVDALSPFGLVSYVSL---TSRGSALVEFES 94
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL 124
+ A +++ A V+++ + NVL++ ++ +A+
Sbjct: 95 ITAAERCVTFNA-----------------------VSDQLETEAPSNVLIIYVQ--NAKY 129
Query: 125 -VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
++ +V+H + GFV++I + G QALV+F D ETA AK L+G I
Sbjct: 130 PITTEVIHQICKPIGFVNRI-IINRRDGIQALVEFRDIETARVAKQRLNGCDI------- 181
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 219
G CT++I ++ L Q+ R+ P +PV
Sbjct: 182 YSGCCTVKIEFAKVQFLDSYKQTTRTCKAYTPNVPV 217
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
D + E SNVL+ ++N +Y +T +V+H + G V +I + ++ G+QAL+++ D++
Sbjct: 109 DQLETEAPSNVLIIYVQNAKYPITTEVIHQICKPIGFVNRI-IINRRDGIQALVEFRDIE 167
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 349
TA VAK+ L G IY G C + I +++ L R+ P+ P+ N+Q
Sbjct: 168 TARVAKQRLNGCDIY-SGCCTVKIEFAKVQFLDSYKQTTRTCKAYTPNVPVTNAQ 221
>gi|256080379|ref|XP_002576459.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 597
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 24/216 (11%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+P+ PS V+H+R LP E ++++ + +G++ + + + QA +EF D+
Sbjct: 88 SRPEDWGEIDPSPVVHVRGLPRHSVEFDVVKAFESYGRIRDV--TMMPQKKQALVEFEDI 145
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV---------NNKTTADVAGNVLLVT 116
+ A A+I + ++ V + +S + IV + +++ ++LL T
Sbjct: 146 SSAEALI----ERNPEVKILNSLVQISFSTSKHIVQRAANRVPTDEQSSLSADNHILLFT 201
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
I TD R ++++ ++ + ++G V +I F K+ QA+V+F + A +AK L+G I
Sbjct: 202 IYDTD-RPITVETIYRITFSYGSVLRIVIFRKSQ-VQAMVEFGSVQEARNAKLHLNGADI 259
Query: 177 PRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 212
P G CTL++ Y+ LSV + D+
Sbjct: 260 ----FP---GCCTLKVDYARPARLSVPRNDQDNWDF 288
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/348 (20%), Positives = 148/348 (42%), Gaps = 64/348 (18%)
Query: 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
S+P+ PS V+H+R LP E ++++ + +G++ + C + ++
Sbjct: 13 SRPEDWGEIDPSPVVHVRGLPRHSVEFDVVKAFESYGRIRDFLCFIHSHV---------- 62
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL---LVTIEGTDA 122
+ A +Y S + + G ++ + G + +V + G
Sbjct: 63 -RVSAAANYKLSVTMSDRGTGSGC------------KRSRPEDWGEIDPSPVVHVRGLPR 109
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
V DV+ F ++G + +T + QALV+F D +A AL R+ P +
Sbjct: 110 HSVEFDVVK-AFESYGRIRDVTMMPQKK--QALVEFEDISSAE----ALIERN-PEVKIL 161
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++ ++I++S + + A + + Q S+ D
Sbjct: 162 NSL----VQISFSTSKHIVQR----------------AANRVPTDEQSSLSAD------- 194
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+++LL +I + +T++ ++ + ++G V +I +F K+ +QA++++ VQ A AK
Sbjct: 195 NHILLFTIYDTDRPITVETIYRITFSYGSVLRIVIFRKSQ-VQAMVEFGSVQEARNAKLH 253
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY-TLPSTPMVNSQ 349
L G I+ G C L + Y+R LS+ N+ + D+ P N Q
Sbjct: 254 LNGADIFPGC-CTLKVDYARPARLSVPRNDQDNWDFEKCERDPFCNFQ 300
>gi|291490719|gb|ADE06675.1| MIP19475p [Drosophila melanogaster]
Length = 206
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 77 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 135
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPM 345
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + M
Sbjct: 136 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTREM 190
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 65 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 123
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 124 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 175
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 176 EPDTSWDYT 184
>gi|442624264|ref|NP_001261093.1| smooth, isoform AB [Drosophila melanogaster]
gi|440214533|gb|AGB93625.1| smooth, isoform AB [Drosophila melanogaster]
Length = 509
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPM 345
++ A A+E L G IY G C L I Y++ L++ N D S DYTL + M
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEM 181
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|358254215|dbj|GAA54232.1| heterogeneous nuclear ribonucleoprotein L, partial [Clonorchis
sinensis]
Length = 561
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
++VLL ++ N+Q+ VTL V+H + S F V +I MF K +QA++++ V+ A K+
Sbjct: 181 NHVLLYTVFNVQHPVTLKVIHQITSMFAEVVRIVMFRK-SNIQAMVEFKSVEDARRVKQN 239
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDY 338
L G IY G C L + Y+R T L++K N++ + D+
Sbjct: 240 LNGADIY-SGCCTLKVDYARPTRLTVKRNDEDTWDF 274
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 25/166 (15%)
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA----------GNVLLVTIEGTDARLVSI 127
S EP ++ ++ + +S + ++ ++ + + +VLL T+ V++
Sbjct: 139 SDEPLRIGEHSIDVSFSTSRHVMQRASSKETSPDPSDPLSTVNHVLLYTVFNVQ-HPVTL 197
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
V+H + S F V +I F K + QA+V+F E A K L+G I G
Sbjct: 198 KVIHQITSMFAEVVRIVMFRK-SNIQAMVEFKSVEDARRVKQNLNGADI-------YSGC 249
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVG 233
CTL++ Y+ T L+VK + D+ N +A DA SVG
Sbjct: 250 CTLKVDYARPTRLTVKRNDEDTWDFEN------NNAADAEPDDSVG 289
>gi|86170640|ref|XP_966055.1| polypyrimidine tract binding protein, putative [Plasmodium
falciparum 3D7]
gi|46362297|emb|CAG25235.1| polypyrimidine tract binding protein, putative [Plasmodium
falciparum 3D7]
Length = 663
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 301
S V+L S+ N+ Y V +++++ +FS G V+KI F +N L QAL+Q+ +V+TA A +
Sbjct: 315 SKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIK 374
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQP 350
L IYDG C ++I YS +L IK NN S DYT+ + + P
Sbjct: 375 TLHNRNIYDG--CNTINIQYSFLKELVIKGNNSSSWDYTISNEKKTKNFP 422
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 35/220 (15%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V I++++ +FS G V KI TF + +QALVQF + ETA A L R+I
Sbjct: 329 VDIELIYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNIYD----- 383
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT------NPYLPV---------APSAIDASG 228
G T+ I YS +L +K + S DYT PV PS
Sbjct: 384 --GCNTINIQYSFLKELVIKGNNSSSWDYTISNEKKTKNFPVLQNSHGVLPTPSRKSVDS 441
Query: 229 QLSVGLDGK-------KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
+L ++ K K+ P +L + ++ L +FS +G V +I + +
Sbjct: 442 ELYQLMEKKFKLVDFEKMNPSKTPVLICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREK 501
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCI----YDGGFCKLH 317
ALIQY + + +A+E L+ I + F K+H
Sbjct: 502 PD-AALIQYSNYIFSSLAQEYLQRARISNQSIEVNFSKIH 540
>gi|195123985|ref|XP_002006482.1| GI18546 [Drosophila mojavensis]
gi|193911550|gb|EDW10417.1| GI18546 [Drosophila mojavensis]
Length = 481
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + + G V +I +F KN G+QA++++
Sbjct: 74 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEF 132
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI-KVNNDRSRDYTLPSTP 344
+ A A+E L G IY G C L I +++ L++ K D S DYTL + P
Sbjct: 133 DSLDAATRARENLNGADIY-AGCCTLKIDFAKPEKLNVYKNETDTSWDYTLSTEP 186
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + + G V +I F+K G QA+V+F + A+ A+ L+G I
Sbjct: 100 ITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARENLNGADI-------Y 151
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I ++ L+V K ++ S DYT
Sbjct: 152 AGCCTLKIDFAKPEKLNVYKNETDTSWDYT 181
>gi|195380768|ref|XP_002049133.1| GJ21415 [Drosophila virilis]
gi|194143930|gb|EDW60326.1| GJ21415 [Drosophila virilis]
Length = 480
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + + G V +I +F KN G+QA++++
Sbjct: 74 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEF 132
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI-KVNNDRSRDYTLPSTP 344
+ A A+E L G IY G C L I +++ L++ K D S DYTL + P
Sbjct: 133 DSLDAATRARENLNGADIY-AGCCTLKIDFAKPEKLNVYKNETDTSWDYTLSTEP 186
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + + G V +I F+K G QA+V+F + A+ A+ L+G I
Sbjct: 100 ITVDVLHKICNPHGQVLRIVIFKKN-GVQAMVEFDSLDAATRARENLNGADI-------Y 151
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I ++ L+V K ++ S DYT
Sbjct: 152 AGCCTLKIDFAKPEKLNVYKNETDTSWDYT 181
>gi|149641747|ref|XP_001507993.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L, partial
[Ornithorhynchus anatinus]
Length = 360
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
DVL+ V + G VQ+I +F +NG +QA++++ V A AK AL G IY G C L I
Sbjct: 1 DVLYTVCNPVGKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIE 58
Query: 320 YSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPE 379
Y+R T L++ N++ S DYT P + + G+Q ++G + + + P
Sbjct: 59 YARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPL 115
Query: 380 QPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHM 426
P+ P+ G+ +P AS S GN P GS+ M G+ Q+ M
Sbjct: 116 LPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PSGSVVMVSGLHQLKM 165
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
DVL+ V + G V +I F++ G QA+V+F A AK AL+G I G
Sbjct: 1 DVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGC 52
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
CTL+I Y+ T L+V + S DYT PYL
Sbjct: 53 CTLKIEYARPTRLNVIRNDNDSWDYTKPYL 82
>gi|386768305|ref|NP_001246423.1| smooth, isoform K [Drosophila melanogaster]
gi|383302595|gb|AFH08176.1| smooth, isoform K [Drosophila melanogaster]
Length = 535
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTL 340
++ A A+E L G IY G C L I Y++ L++ N D S DYTL
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL 176
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDYT 213
+ S DYT
Sbjct: 167 EPDTSWDYT 175
>gi|386768321|ref|NP_001246430.1| smooth, isoform V [Drosophila melanogaster]
gi|383302603|gb|AFH08183.1| smooth, isoform V [Drosophila melanogaster]
Length = 540
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTL 340
++ A A+E L G IY G C L I Y++ L++ N D S DYTL
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL 176
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 95 NRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
N+Q+ + NK+ D+ ++LL TI +++DVLH + G V +I
Sbjct: 56 NQQQALMNKSNDDLRRKRPETTRPNHILLFTIINP-FYPITVDVLHKICHPHGQVLRIVI 114
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSV-KF 204
F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+ L+V K
Sbjct: 115 FKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEKLNVYKN 166
Query: 205 QSHRSRDY---TNPYLPVA 220
+ S DY T LP+A
Sbjct: 167 EPDTSWDYTLSTGEILPIA 185
>gi|386768329|ref|NP_001246434.1| smooth, isoform AA [Drosophila melanogaster]
gi|383302607|gb|AFH08187.1| smooth, isoform AA [Drosophila melanogaster]
Length = 508
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 63 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 121
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTL 340
++ A A+E L G IY G C L I Y++ L++ N D S DYTL
Sbjct: 122 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL 171
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 89 VYLQYSNRQEIVNNKTTADVA---------GNVLLVTIEGTDARLVSIDVLHLVFSAFGF 139
V++ N+Q+ + NK+ D+ ++LL TI +++DVLH + G
Sbjct: 45 VHMHARNQQQALMNKSNDDLRRKRPETTRPNHILLFTII-NPFYPITVDVLHKICHPHGQ 103
Query: 140 VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 199
V +I F+K G QA+V+F + + A+ A+ L+G I G CTL+I Y+
Sbjct: 104 VLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGCCTLKIDYAKPEK 155
Query: 200 LSV-KFQSHRSRDY---TNPYLPVAPSAIDASGQLSVGLDGKKL--EPESNVLLAS 249
L+V K + S DY T LP+ S L L GK L PE+ V+L S
Sbjct: 156 LNVYKNEPDTSWDYTLSTGEILPIKEIGNGRSPLLQEPLYGKSLFSIPENVVMLES 211
>gi|401402366|ref|XP_003881231.1| gg11844, related [Neospora caninum Liverpool]
gi|325115643|emb|CBZ51198.1| gg11844, related [Neospora caninum Liverpool]
Length = 460
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKEAL 303
V+LAS+ N+ Y V +D++H +FS +G ++KI F K+ + QALIQ+ + + A A L
Sbjct: 15 VVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQNAEQARHALMNL 74
Query: 304 EGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
IYDG C L I SR +L +K N +S DYT+ S
Sbjct: 75 HSRNIYDG--CNTLQIQPSRLNELVVKNNTQKSWDYTVQS 112
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V ID++H +FS +G + KI TF K+ +QAL+QF + E A A L R+I
Sbjct: 27 VDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQNAEQARHALMNLHSRNIYD----- 81
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G TL+I S +L VK + +S DYT
Sbjct: 82 --GCNTLQIQPSRLNELVVKNNTQKSWDYT 109
>gi|47218405|emb|CAG12676.1| unnamed protein product [Tetraodon nigroviridis]
Length = 582
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 55/112 (49%), Gaps = 29/112 (25%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRN------------------ 56
PPS+VLH+R LP E TE E+I LG PFGKV N G N+
Sbjct: 39 PPSRVLHIRKLPNEATETEIIALGLPFGKVTNILTLKGKNQVKEPDCNHSLLPCRRGPGP 98
Query: 57 ---------QAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
QAF+E AI M++YYA+ + VR V++QYSN +E+
Sbjct: 99 GALTVALCLQAFLEMGTEEAAITMVNYYATVT--PHVRNVPVFIQYSNHKEL 148
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 52/207 (25%)
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 251
I YS H +L + R++ A SA+ + G S + S VL I+
Sbjct: 140 IQYSNHKELKTDAGNQRTQAVLQ-----AVSAVQSGGSPSSDVQEALAAASSPVLRIIID 194
Query: 252 NMQYAVTLDVLHMVF-------SAFGPVQKIAMFDKNGGL-------------------- 284
NM Y VTLDVL V S V K +F +
Sbjct: 195 NMFYPVTLDVLQQVAFPHPLPPSVGRSVSKSGLFLGSSDFLQVRHSHEDNHLHQEQSVPG 254
Query: 285 QALIQYPDVQTA-------------------VVAKEALEGHCIYDGGFCKLHISYSRHTD 325
+ +Q P + A + +AL+G IY+ C L I +S+ +
Sbjct: 255 SSAVQRPRQRAAGQTGKALPPGVLAACSGLTFIHLQALDGQNIYNS-CCTLRIDFSKLVN 313
Query: 326 LSIKVNNDRSRDYTLPSTPMVNSQPSI 352
L++K NND+SRDYT P P + QPS+
Sbjct: 314 LNVKYNNDKSRDYTRPELPAGDGQPSL 340
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 43/190 (22%)
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA-------PS 222
ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP P+
Sbjct: 291 ALDGQNIYNSC-------CTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPSLDPA 343
Query: 223 AIDASGQLSVGLDGK---KLEPES---------------------NVLLASIENMQYAVT 258
A + S L GK L P S VLL S N + VT
Sbjct: 344 VAAAFSKDSNSLLGKIPGALTPLSAAAAAAAAAGRVALAGQAGSGGVLLVSNLNEEM-VT 402
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
L +F +G VQ++ + N ALIQ D A +A L G +Y + +
Sbjct: 403 PQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMSDANQAQLAMSHLNGQKMYGK---IIRV 458
Query: 319 SYSRHTDLSI 328
+ S+H +++
Sbjct: 459 TLSKHQSVAL 468
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
+G VLLV+ + +V+ L +F +G V ++ AL+Q SD A A
Sbjct: 387 SGGVLLVS--NLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKD-SALIQMSDANQAQLAM 443
Query: 169 NALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASG 228
+ L+G + M +R+T S H +++ + T Y G
Sbjct: 444 SHLNG---------QKMYGKIIRVTLSKHQSVALPRDGLDDQGLTKDYANSPLHRFKKPG 494
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
+ + + P S L + N+ VT D L ++FS G K F ++ + ALI
Sbjct: 495 SKNF----QNIFPPSATL--HLSNIPQNVTEDDLRLLFSNTGGTVKAFKFFQDRKM-ALI 547
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
Q V+ A+ A ++ H GG L +S+S+ T
Sbjct: 548 QMSTVEEAIQA--LIDLHNYNMGGNQHLRVSFSKST 581
>gi|156378504|ref|XP_001631182.1| predicted protein [Nematostella vectensis]
gi|156218218|gb|EDO39119.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 20/205 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-NVGANRNQAFIEFADLNQAIAMISY 74
PS+V+H+R + E E++L++ +G N C + QA +EF ++ A +++
Sbjct: 46 PSRVVHVRGVADEAREQDLMQCLSQYG---NISCITMMPKIRQALVEFEEIACANTLVNQ 102
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA--GNVLLVTIEGTDARLVSIDVLHL 132
P + G+ Y YS ++I N +LL+TI +V+ D+LH
Sbjct: 103 -TQMGNPVILCGRPAYANYSKSKQISRNVHVRSETQPNKILLITIINPQY-VVTTDILHT 160
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQ---FSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
+FS G V +I F K+ G QA+V+ F E A AK L+G I G T
Sbjct: 161 IFSKQGMVQRIVIFRKS-GLQAMVEESRFDCVEAARHAKETLNGADI-------YTGCNT 212
Query: 190 LRITYSAHT-DLSVKFQSHRSRDYT 213
L+I + L+V+ + DYT
Sbjct: 213 LKIESQGYAQQLNVRKNDSETYDYT 237
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQA 286
S Q+S + + + +LL +I N QY VT D+LH +FS G VQ+I +F K+ GLQA
Sbjct: 123 SKQISRNVHVRSETQPNKILLITIINPQYVVTTDILHTIFSKQGMVQRIVIFRKS-GLQA 181
Query: 287 LIQ---YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST 343
+++ + V+ A AKE L G IY G S L+++ N+ + DYT
Sbjct: 182 MVEESRFDCVEAARHAKETLNGADIYTGCNTLKIESQGYAQQLNVRKNDSETYDYTQDKG 241
Query: 344 PMVNSQP----SILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQ 399
P + P +L P G + PP G+GA P +
Sbjct: 242 PGMLGHPPPKQGLLSPPPPAYGGGPPAYGGAPNYGGAPP----------MGYGAQPMQAP 291
Query: 400 SMPMMGNHP 408
M NHP
Sbjct: 292 QMQTYRNHP 300
>gi|391333478|ref|XP_003741140.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like
[Metaseiulus occidentalis]
Length = 485
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 221 PSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK 280
P +D +G+ + L+P ++++L +I N Y + ++V++ + G VQ+I +F K
Sbjct: 2 PFDMDDNGRAPKRQRTEALKP-NHIVLMTIRNALYPIDVEVIYKISHTLGRVQRIVIFRK 60
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
N G+QAL+++ +V A AK L+G IY G C L + Y++ + L++ N+ + DYT
Sbjct: 61 N-GVQALVEFENVDQATRAKNELDGADIYQ-GCCTLKLEYAKPSKLNVYKNDKDTWDYT 117
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 103 KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
+T A +++L+TI + ++V++ + G V +I F K G QALV+F + +
Sbjct: 16 RTEALKPNHIVLMTIRNA-LYPIDVEVIYKISHTLGRVQRIVIFRKN-GVQALVEFENVD 73
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
A+ AKN LDG I + G CTL++ Y+ + L+V + DYT
Sbjct: 74 QATRAKNELDGADIYQ-------GCCTLKLEYAKPSKLNVYKNDKDTWDYT 117
>gi|194881395|ref|XP_001974833.1| GG20898 [Drosophila erecta]
gi|190658020|gb|EDV55233.1| GG20898 [Drosophila erecta]
Length = 210
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 235 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 290
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KN G+QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEF 126
Query: 291 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPS 342
++ A A+E L G IY G C L I Y++ L++ N D S DYTL +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLST 178
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+++DVLH + G V +I F+K G QA+V+F + + A+ A+ L+G I
Sbjct: 94 ITVDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------Y 145
Query: 185 MGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I Y+ L+V K + S DYT
Sbjct: 146 AGCCTLKIDYAKPEKLNVYKNEPDTSWDYT 175
>gi|355714182|gb|AES04921.1| polypyrimidine tract binding protein 2 [Mustela putorius furo]
Length = 121
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 20 LHLRNLPWECTE-----EELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
LH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++Y
Sbjct: 1 LHIRKLPGEVTEGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNY 58
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVL 113
Y++ + +R + +Y+QYSN +E+ + T A VL
Sbjct: 59 YSAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVL 95
>gi|402586462|gb|EJW80400.1| hypothetical protein WUBG_08691, partial [Wuchereria bancrofti]
Length = 229
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+HLRN+P + T+ ELI P+GK++N G RNQAF+E+ D A +++
Sbjct: 128 SRVVHLRNIPSDMTDLELIHFCMPYGKLINYLLLRG--RNQAFVEYEDERSAQTLVTVNI 185
Query: 77 SSSEPAQVRGKTVYLQYSNRQEI-VNNKTTADVAGNVLLV 115
+ P +R +T++ Q+S QE+ N + AD G+ L++
Sbjct: 186 AC--PVAIRDRTIFCQFSTHQELKTNRRLRADSNGSNLII 223
>gi|414872529|tpg|DAA51086.1| TPA: hypothetical protein ZEAMMB73_223567 [Zea mays]
Length = 357
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIP 177
+R +I LVFSAFG+VHKI TFEK QAL+Q++D TAS+A+ +LDGRSIP
Sbjct: 261 SRSPAIICTRLVFSAFGYVHKIATFEK---LQALIQYTDAATASAARESLDGRSIP 313
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 263 HMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317
+VFSAFG V KIA F+K LQALIQY D TA A+E+L+G I G LH
Sbjct: 270 RLVFSAFGYVHKIATFEK---LQALIQYTDAATASAARESLDGRSIPSGNLLMLH 321
>gi|68068337|ref|XP_676078.1| polypyrimidine tract binding protein [Plasmodium berghei strain
ANKA]
gi|56495606|emb|CAH97516.1| polypyrimidine tract binding protein, putative [Plasmodium berghei]
Length = 453
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 301
S V+L S+ NMQY V +++++ +FS G V+KI K + QAL+Q +Q A A +
Sbjct: 105 SKVILVSVVNMQYPVDMELIYYLFSKCGIVEKIITISKKTSIFQALVQLESIQVAKEAIK 164
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
L IYDG C L I YS +L IK NN ++ DYT P+
Sbjct: 165 TLHNRNIYDG--CNTLQIQYSFLKELIIKNNNSQAWDYTTPN 204
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 44/264 (16%)
Query: 101 NNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF-EKTAGFQALVQFS 159
N K + V+LV++ V +++++ +FS G V KI T +KT+ FQALVQ
Sbjct: 96 NTKYNKNECSKVILVSVVNMQYP-VDMELIYYLFSKCGIVEKIITISKKTSIFQALVQLE 154
Query: 160 DTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP---- 215
+ A A L R+I G TL+I YS +L +K + ++ DYT P
Sbjct: 155 SIQVAKEAIKTLHNRNIYD-------GCNTLQIQYSFLKELIIKNNNSQAWDYTTPNPQK 207
Query: 216 ------------YLPVAPSAIDASGQLSVGLDGK--------KLEPESNVLLASIENMQY 255
LP I + +L L+ K K ++ VL+ Y
Sbjct: 208 NKNNFSFQTSHGVLPTPTRNIKET-ELYKLLERKFKIVDFETKNTSKTPVLICYNIPKDY 266
Query: 256 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315
+ ++ L +FS +G V +I + + ALIQY + + +A+E C+ C+
Sbjct: 267 S-DVNKLFNLFSVYGYVSRIKILREKPD-SALIQYSNYLFSSLAQE-----CLQHAKICQ 319
Query: 316 --LHISYSRHTDLSIKVNNDRSRD 337
L + +S+ D+ I D++RD
Sbjct: 320 NILELHFSKIYDIKISY-QDKNRD 342
>gi|221484270|gb|EEE22566.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
GT1]
gi|221505749|gb|EEE31394.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
VEG]
Length = 446
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 241 PES-NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVV 298
PES V+LAS+ N+ Y V +D++H +FS +G ++KI F K+ + QALIQ+ A
Sbjct: 10 PESFRVVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQSPDQARH 69
Query: 299 AKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
A L IYDG C L I SR +L +K N +S DYT+ S
Sbjct: 70 ALMNLHSRNIYDG--CNTLQIQPSRLNELVVKNNTQKSWDYTVQS 112
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V ID++H +FS +G + KI TF K+ +QAL+QF + A A L R+I
Sbjct: 27 VDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQSPDQARHALMNLHSRNIYD----- 81
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G TL+I S +L VK + +S DYT
Sbjct: 82 --GCNTLQIQPSRLNELVVKNNTQKSWDYT 109
>gi|237838325|ref|XP_002368460.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
ME49]
gi|211966124|gb|EEB01320.1| polypyrimidine track-binding protein, putative [Toxoplasma gondii
ME49]
Length = 446
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 241 PES-NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVV 298
PES V+LAS+ N+ Y V +D++H +FS +G ++KI F K+ + QALIQ+ A
Sbjct: 10 PESFRVVLASVTNLLYPVDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQSPDQARH 69
Query: 299 AKEALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPS 342
A L IYDG C L I SR +L +K N +S DYT+ S
Sbjct: 70 ALMNLHSRNIYDG--CNTLQIQPSRLNELVVKNNTQKSWDYTVQS 112
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V ID++H +FS +G + KI TF K+ +QAL+QF + A A L R+I
Sbjct: 27 VDIDLIHYLFSKYGEIEKIVTFSKSPTMYQALIQFQSPDQARHALMNLHSRNIYD----- 81
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G TL+I S +L VK + +S DYT
Sbjct: 82 --GCNTLQIQPSRLNELVVKNNTQKSWDYT 109
>gi|342183429|emb|CCC92909.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 320
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 84 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 141
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A + G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 142 ETGY-ADIDGRRVYIRYSNHQELTATQHTSKT----LLVSMFNTQYDVSAATSITPMIVY 196
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSI 176
+F +G V KI K QALVQF +TA + KN L G+ +
Sbjct: 197 QIFCNYGAVQKIVVLPKNDSSQRNHNRVQALVQFDSKQTAENVKNILQGQPV 248
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 22/113 (19%)
Query: 243 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDKNGG-------LQALIQ 289
S LL S+ N QY ++T +++ +F +G VQKI + KN +QAL+Q
Sbjct: 170 SKTLLVSMFNTQYDVSAATSITPMIVYQIFCNYGAVQKIVVLPKNDSSQRNHNRVQALVQ 229
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFC--KLHISYSRHTD-------LSIKVNND 333
+ QTA K L+G + G L I +SR + +S+ VN D
Sbjct: 230 FDSKQTAENVKNILQGQPVTIGETVTFTLDIQFSRMDNIKTSNPAISLVVNED 282
>gi|375073695|gb|AFA34406.1| polypirimidine tract binding 2 protein, partial [Ostrea edulis]
Length = 142
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 24/139 (17%)
Query: 60 IEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLV---- 115
+EF D + M+S++ + PAQ+R K VY+Q+SN +E+ ++ +
Sbjct: 1 LEFLDEQAGVTMVSFHQQN--PAQIRMKPVYVQFSNHKELKTDQANSFQNATAQAALQAA 58
Query: 116 -------TIEG---TDARL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
T EG T R+ V I+VL+ +FS FG V K+ F K FQAL+Q
Sbjct: 59 SAVMGGPTEEGQKRTTLRIIVEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQ 118
Query: 158 FSDTETASSAKNALDGRSI 176
SD A++AK +LDG++I
Sbjct: 119 MSDPVAANAAKLSLDGQNI 137
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+E++ Y V ++VL+ +FS FG V K+ +F KN QALIQ D A AK +L+G IY
Sbjct: 79 VEHLVYPVGIEVLYQIFSKFGKVLKMIIFTKNNSFQALIQMSDPVAANAAKLSLDGQNIY 138
Query: 310 DG 311
+G
Sbjct: 139 NG 140
>gi|281205212|gb|EFA79405.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 437
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 149/378 (39%), Gaps = 114/378 (30%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
V+S F PS V+H R LP+ E E+ L PFG+V QA IE
Sbjct: 45 VASGTDFDEVLQPSAVVHCRGLPYNIGEAEITSLLAPFGRV---------ESGQALIEMD 95
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
L + A+I+ +S + P + G+ ++
Sbjct: 96 SLQSSSAIIAQSSSPT-PISLFGQKIF--------------------------------- 121
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
S +G V +I F+K G QA V+F +A AK+AL+G+ I
Sbjct: 122 -----------SPYGRVLRIVIFQK-KGLQAFVEFESPYSAWVAKDALNGQDI------- 162
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL--------------PVAPSAIDASG- 228
G CTL+I ++ L+VK ++ DYT + P AP+ +D +G
Sbjct: 163 YTGSCTLQIDFARVNKLNVKVNDEKTTDYTMDLIQPPGAPIGMTAHGYPFAPAHMDPTGF 222
Query: 229 ------------------QLSVGLD-------GKKLEPESNVLLASIENMQYAVTLDVLH 263
+VG+ G +EP + ++ + + +T D L
Sbjct: 223 TKQSAYMMNPSAAAAAPHPSAVGVQPHHPGFMGYPMEPMTQSVIM-VHKLPENITADQLF 281
Query: 264 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC--KLHISYS 321
+F +G V KI M N A++Q D + A A+ HC+ K+ + +S
Sbjct: 282 NIFCLYGTVLKIKML-HNTKSGAMVQMAD---GIQADSAI--HCLNLANIFGQKIQVFHS 335
Query: 322 RHTDLSIKVNNDRSRDYT 339
RH ++ ++++++DY+
Sbjct: 336 RHPSIA---DSEKTKDYS 350
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 16/111 (14%)
Query: 265 VFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
+FS +G V +I +F K G LQA +++ +A VAK+AL G IY G C L I ++R
Sbjct: 120 IFSPYGRVLRIVIFQKKG-LQAFVEFESPYSAWVAKDALNGQDIYTGS-CTLQIDFARVN 177
Query: 325 DLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAP 375
L++KVN++++ DYT+ L Q P +G TA+ Y FAP
Sbjct: 178 KLNVKVNDEKTTDYTMD-----------LIQPPGAPIGMTAHGY---PFAP 214
>gi|256071583|ref|XP_002572119.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645120|emb|CCD60181.1| heterogeneous nuclear ribonucleoprotein l (hnrnp l), putative
[Schistosoma mansoni]
Length = 710
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 32/178 (17%)
Query: 185 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 244
+GP +R+ +S+ T V + H+S+ SA+D++ ++
Sbjct: 109 VGPNRVRLEFSSETITPVIDRKHQSQS----------SALDSNS-------------PTH 145
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEA 302
+L I N +Y +T+DV+ + S G + + + KN L+AL+++ +V+ A AKE
Sbjct: 146 ILHLDISNAEYPITVDVIKAICSPHGNILRTFIGKKNVDRSLEALVEFENVEEARAAKEQ 205
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS----TPMVNS--QPSILG 354
L+G IY G C L ++YSR + + N+ S D+T PS P+ NS Q ++LG
Sbjct: 206 LDGADIYS-GCCNLTVAYSRLQRVHVTQNDSESWDFTGPSGNLEGPLNNSSTQRTLLG 262
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+ T PS + + ++P CTE +LI L +G++ N K V + R A +EF +++
Sbjct: 39 YLVTNQPSCTIVVADIPEGCTERDLIGLFSRYGQIKNAKL-VCSGR-AALVEFCEISPPT 96
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNR--QEIVNNK-----TTADVAGNVLLVTIEGTDA 122
++ + + P V V L++S+ +++ K + D ++ ++ ++A
Sbjct: 97 RLV--HMAKINPFLVGPNRVRLEFSSETITPVIDRKHQSQSSALDSNSPTHILHLDISNA 154
Query: 123 RL-VSIDVLHLVFSAFGFVHKITTFEKTA--GFQALVQFSDTETASSAKNALDGRSIPRY 179
+++DV+ + S G + + +K +ALV+F + E A +AK LDG I
Sbjct: 155 EYPITVDVIKAICSPHGNILRTFIGKKNVDRSLEALVEFENVEEARAAKEQLDGADI--- 211
Query: 180 LLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
G C L + YS + V S D+T P
Sbjct: 212 ----YSGCCNLTVAYSRLQRVHVTQNDSESWDFTGP 243
>gi|413933765|gb|AFW68316.1| hypothetical protein ZEAMMB73_143783 [Zea mays]
gi|413945517|gb|AFW78166.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 128
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PSKV+H+RN+ E E +L++L +PFG V +K + +NQ ++ D++ +++ + Y
Sbjct: 3 EPSKVIHIRNVGHEIAESDLLQLLQPFGVV--SKIVMLRAKNQTLLQMEDIHASVSALQY 60
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTT 105
Y +S +P+ +RG+ VY+Q+S+ QE+ ++++
Sbjct: 61 Y-TSVQPS-IRGRNVYMQFSSHQELTTDQSS 89
>gi|70926044|ref|XP_735622.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56509445|emb|CAH87610.1| hypothetical protein PC302548.00.0 [Plasmodium chabaudi chabaudi]
Length = 201
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 301
S V+L S+ NMQY V +++++ +FS G V+KI K + QAL+Q ++ A A +
Sbjct: 79 SKVILVSVVNMQYPVDIELIYYLFSKCGVVEKIITISKKTSIFQALVQLESIEVAKEAIK 138
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
L IYDG C L I YS +L +K NN +S DYT S P N S
Sbjct: 139 TLHNRNIYDG--CNTLQIQYSFLKELIVKNNNSQSWDYT-TSNPQRNKSNS 186
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 15/137 (10%)
Query: 84 VRGKTVYLQYSNRQEIVN------NKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAF 137
+RG Y N ++ +N +K + V+LV++ V I++++ +FS
Sbjct: 47 MRGSMEYFDRENSKDNLNGHDKRNSKYNKNECSKVILVSVVNMQYP-VDIELIYYLFSKC 105
Query: 138 GFVHKITTF-EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
G V KI T +KT+ FQALVQ E A A L R+I G TL+I YS
Sbjct: 106 GVVEKIITISKKTSIFQALVQLESIEVAKEAIKTLHNRNIYD-------GCNTLQIQYSF 158
Query: 197 HTDLSVKFQSHRSRDYT 213
+L VK + +S DYT
Sbjct: 159 LKELIVKNNNSQSWDYT 175
>gi|401414770|ref|XP_003871882.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488102|emb|CBZ23349.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 301
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 23/174 (13%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+RN+ E T+ + L + FG + + NQA IE A ++ ++
Sbjct: 72 SSVIHMRNVTPEVTQLSIQNLAQNFGDI--KHIVMLRQMNQALIEMKSPKSAEQLVDFF- 128
Query: 77 SSSEP--AQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDV 129
EP A++ G+ VY+++S Q N T A LLV++ T A ++ ++
Sbjct: 129 --KEPGYAEIDGRRVYIRFSTHQ----NLTATQHATRTLLVSMFNTQYDVSAAAHITPEI 182
Query: 130 LHLVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSI 176
++ +F+++G V +I K QALVQF E+A KN L G+ +
Sbjct: 183 VYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQPV 236
>gi|146076563|ref|XP_001462957.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|398009965|ref|XP_003858181.1| RNA-binding protein, putative [Leishmania donovani]
gi|134067038|emb|CAM65144.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|322496386|emb|CBZ31457.1| RNA-binding protein, putative [Leishmania donovani]
Length = 311
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+RN+ E T+ + L + FG + + NQA IE A ++ ++
Sbjct: 82 SSVIHMRNVTPEVTQLSIQNLAQNFGDI--KHIVMLRQMNQALIEMKSPKSAEQLVDFF- 138
Query: 77 SSSEP--AQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDV 129
EP A++ G+ VY+++S Q N T A LLV++ T A ++ ++
Sbjct: 139 --KEPGYAEIDGRRVYIRFSTHQ----NLTATQHATRTLLVSMFNTQYDVSAAAHITPEI 192
Query: 130 LHLVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++ +F+++G V +I K QALVQF E+A KN L G+
Sbjct: 193 VYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQ-------- 244
Query: 183 ENMGPCTL--RITYSAHTDLSVKFQSHRSRDYTNP 215
P TL IT++ L ++F TNP
Sbjct: 245 ----PVTLGETITFT----LDIQFSRMDEIKTTNP 271
>gi|76155644|gb|AAX26933.2| SJCHGC05534 protein [Schistosoma japonicum]
Length = 219
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +++
Sbjct: 44 RLEASPSRVIHIRNMPADATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEESVQ 101
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQE---------IVNNKTTAD-------------V 108
++++Y P + GK + Q+S IVN A+ V
Sbjct: 102 LVAHYLKY--PVTLHGKHLIFQFSTHSHLELISENDAIVNAIKNANRVVQQDLPGAQTGV 159
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD 160
VL V I+ + ++ +L+ +F FG + ++ F + ++ L++F D
Sbjct: 160 PNTVLHVVIDNIMGQQINHVILYKIFHRFGIILRVLIFLRNNQYRCLLEFQD 211
>gi|340056209|emb|CCC50538.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 314
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 80 SRVIHMRNITPNVTQLSIQNLVQNFGSI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 137
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A++ G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 138 ETGY-AEIDGRRVYIRYSNHQELTATQHTSK----TLLVSMFNTQYDVSAAAQINPMIVY 192
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+F+ +G V KI K QALVQF TA + KN L G+ P
Sbjct: 193 QIFANYGAVQKIVVLPKNESSQRNHNRVQALVQFDSKATAENVKNILQGQ-------PVT 245
Query: 185 MGPC---TLRITYSAHTDL 200
+G TL I +S D+
Sbjct: 246 IGETVTFTLDIQFSRMDDI 264
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 243 SNVLLASIENMQYAVTLD------VLHMVFSAFGPVQKIAMFDKN-------GGLQALIQ 289
S LL S+ N QY V+ +++ +F+ +G VQKI + KN +QAL+Q
Sbjct: 166 SKTLLVSMFNTQYDVSAAAQINPMIVYQIFANYGAVQKIVVLPKNESSQRNHNRVQALVQ 225
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFC--KLHISYSRHTD-------LSIKVNND 333
+ TA K L+G + G L I +SR D +S+ +N D
Sbjct: 226 FDSKATAENVKNILQGQPVTIGETVTFTLDIQFSRMDDIKTSNPAISLVINED 278
>gi|112280295|gb|ABI14681.1| polypyrimidine tract binding protein [Plasmodium chabaudi chabaudi]
gi|112280297|gb|ABI14682.1| polypyrimidine tract binding protein [Plasmodium chabaudi chabaudi]
Length = 142
Score = 67.0 bits (162), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 301
S V+L S+ NMQY V +++++ +FS G V+KI K + QAL+Q ++ A A +
Sbjct: 28 SKVILVSVVNMQYPVDIELIYYLFSKCGVVEKIITISKKTSIFQALVQLESIEVAKEAIK 87
Query: 302 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351
L IYDG C L I YS +L +K NN +S DYT S P N S
Sbjct: 88 TLHNRNIYDG--CNTLQIQYSFLKELIVKNNNSQSWDYT-TSNPQRNKNNS 135
Score = 53.1 bits (126), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 95 NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF-EKTAGFQ 153
N + N+K + V+LV++ V I++++ +FS G V KI T +KT+ FQ
Sbjct: 13 NGHDKRNSKYNKNECSKVILVSVVNMQYP-VDIELIYYLFSKCGVVEKIITISKKTSIFQ 71
Query: 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
ALVQ E A A L R+I G TL+I YS +L VK + +S DYT
Sbjct: 72 ALVQLESIEVAKEAIKTLHNRNIYD-------GCNTLQIQYSFLKELIVKNNNSQSWDYT 124
Query: 214 --NP 215
NP
Sbjct: 125 TSNP 128
>gi|154331968|ref|XP_001561801.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059121|emb|CAM41596.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 315
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+RN+ E T+ + L + FG + + NQA IE A ++ ++
Sbjct: 86 SSVIHMRNVTPEVTQLSIQNLAQNFGDI--KHIVMLRQMNQALIEMKSPKSAEQLVDFF- 142
Query: 77 SSSEP--AQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDV 129
EP A++ G+ VY+++S Q N T A LLV++ T A ++ ++
Sbjct: 143 --KEPGYAEIDGRRVYIRFSTHQ----NLTATQHATRTLLVSMFNTQYDVSTAAHITPEI 196
Query: 130 LHLVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++ +F+++G V +I K QALVQF E+A KN L G+
Sbjct: 197 VYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQ-------- 248
Query: 183 ENMGPCTL--RITYSAHTDLSVKFQSHRSRDYTNP 215
P TL IT++ L ++F TNP
Sbjct: 249 ----PVTLGETITFT----LDIQFSRMDEIKTTNP 275
>gi|209880247|ref|XP_002141563.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557169|gb|EEA07214.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 469
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L+L LP++ TEE + EL +PFG + K V + AF+E+ D+ +A +
Sbjct: 60 SRTLYLCKLPYDMTEEAVRELCEPFGDL--KKVAVYPQKGIAFVEYFDIRKAEVARNTLK 117
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV---SIDVLHLV 133
+S QV+G+ + +QYS ++ ++ + D L V D V ++D +
Sbjct: 118 NS----QVQGRIIDVQYSRGRD---DRPSRDTNTGTLYVRPVVNDKGFVDPNTVDDYKQL 170
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
F A+G V K+++ K + V+F DT A +++ AL+G
Sbjct: 171 FGAYGDVKKVSSNRKREA-EKFVEFYDTRGAEASQKALNG 209
>gi|76363834|ref|XP_888628.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|12311843|emb|CAC22661.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 311
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 41/215 (19%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S V+H+RN+ E T+ + L + FG + + NQA IE A ++ ++
Sbjct: 82 SSVIHMRNVTPEVTQLSIQNLAQNFGDI--KHIVMLRQMNQALIEMKSPKSAEQLVDFF- 138
Query: 77 SSSEP--AQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDV 129
EP A++ G+ VY+++S Q N T A LLV++ T A ++ ++
Sbjct: 139 --KEPGYAEIDGRRVYIRFSTHQ----NLTATQHATRTLLVSMFNTQYDVSAAAHITPEI 192
Query: 130 LHLVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLP 182
++ +F+++G V +I K QALVQF E+A KN L G+
Sbjct: 193 VYQIFASYGTVERIVVLPKNESSQWNHNRVQALVQFDARESAEHVKNILQGQ-------- 244
Query: 183 ENMGPCTL--RITYSAHTDLSVKFQSHRSRDYTNP 215
P TL IT++ L ++F TNP
Sbjct: 245 ----PVTLGETITFT----LDIQFSRMDEIKTTNP 271
>gi|71745136|ref|XP_827198.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831363|gb|EAN76868.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261331414|emb|CBH14408.1| DRBD4 [Trypanosoma brucei gambiense DAL972]
Length = 327
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 81 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 138
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A++ G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 139 EAGY-AEIDGRRVYIRYSNHQELTATQHTSK----TLLVSMFNTQYDVSAATSITPMIVY 193
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSI 176
+F +G V KI K QALVQF TA + KN L G+ +
Sbjct: 194 QIFCNYGAVQKIVVLPKNESSQRNHNRVQALVQFDSKATAENVKNILQGQPV 245
>gi|345494580|ref|XP_001604099.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Nasonia
vitripennis]
Length = 520
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 42/140 (30%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP----------- 291
++VLL +I N Y +T++VLH + G VQ+I +F KNG +QA+++YP
Sbjct: 33 NHVLLFTIINPVYPITVEVLHAISHQSGTVQRIVIFKKNG-VQAMVEYPLHTAILLFVVF 91
Query: 292 -----------------------------DVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
V++A AKEAL G IY G C L I Y++
Sbjct: 92 FFFLFNCMLISITTSYPKSLTEFFEITFDSVESATRAKEALHGADIYSG-CCTLKIDYAK 150
Query: 323 HTDLSIKVNNDRSRDYTLPS 342
T L++ N+ S DYT P+
Sbjct: 151 PTKLNVYKNDSESWDYTTPA 170
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 64/174 (36%), Gaps = 54/174 (31%)
Query: 96 RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155
R+ NNK +VLL TI ++++VLH + G V +I F+K G QA+
Sbjct: 24 RKREDNNK-----PNHVLLFTII-NPVYPITVEVLHAISHQSGTVQRIVIFKKN-GVQAM 76
Query: 156 VQ----------------------------------------FSDTETASSAKNALDGRS 175
V+ F E+A+ AK AL G
Sbjct: 77 VEYPLHTAILLFVVFFFFLFNCMLISITTSYPKSLTEFFEITFDSVESATRAKEALHGAD 136
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
I G CTL+I Y+ T L+V S DYT P + D SG
Sbjct: 137 I-------YSGCCTLKIDYAKPTKLNVYKNDSESWDYTTPAIGAGSHKNDTSGN 183
>gi|324528885|gb|ADY48963.1| Polypyrimidine tract-binding protein 1 [Ascaris suum]
Length = 122
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
Q PSK +HLRN+P + TE EL+ P+GK+VN G +NQAF+E+ + A +++
Sbjct: 13 QRPSKGVHLRNIPSDMTELELLHFCMPYGKLVNYLMLKG--KNQAFVEYEEEQGAQILVT 70
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNK 103
SS+ P +R +T++ Q+S QE+ +K
Sbjct: 71 M--SSACPVAIRDRTIFCQFSTHQELKTDK 98
>gi|256077594|ref|XP_002575087.1| polypyrimidine tract binding protein [Schistosoma mansoni]
gi|360045192|emb|CCD82740.1| putative polypyrimidine tract binding protein [Schistosoma mansoni]
Length = 584
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 43/232 (18%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRN-QAFIEFADLNQAIAMIS 73
P S+VLH+R LP + E E+ L PFG + N + +N QA IE L A +M
Sbjct: 40 PESRVLHIRGLPSDVNELEVSTLAIPFGSIANM---ILTRKNCQALIEMDTLESAESMFG 96
Query: 74 YYASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSI----- 127
YY P +RGK + +Q+S + N+ T N +E + + V+
Sbjct: 97 YYTVICSPI-LRGKYPLEVQFSKYSSLTNSMT-----NNAATSAVEEANKQFVAFRCENE 150
Query: 128 ----DVLHL------------------VFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
VLH+ F FG + ++ +F+K A +++S+ +A
Sbjct: 151 DSPKTVLHIHVEKLHGSMEIGYLPFFMSFKPFGQILRVISFKKNDSRHAFLEYSNAISAH 210
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYT-NPY 216
AK ++G +P + + N LR +S L + + + RD+ NP+
Sbjct: 211 VAKLQMNG--VPLFPMESNFN--ILRTEFSRQQTLEIHREDNSCRDFIQNPW 258
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 220 APSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVL--HMVFSAFGPVQKIAM 277
A SA++ + + V + + VL +E + ++ + L M F FG + ++
Sbjct: 131 ATSAVEEANKQFVAFRCENEDSPKTVLHIHVEKLHGSMEIGYLPFFMSFKPFGQILRVIS 190
Query: 278 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHISYSRHTDLSIKVNNDRS 335
F KN A ++Y + +A VAK + G ++ + F L +SR L I ++
Sbjct: 191 FKKNDSRHAFLEYSNAISAHVAKLQMNGVPLFPMESNFNILRTEFSRQQTLEIHREDNSC 250
Query: 336 RDY 338
RD+
Sbjct: 251 RDF 253
>gi|358337425|dbj|GAA28121.2| regulator of differentiation 1 [Clonorchis sinensis]
Length = 757
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 30/228 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VL +RNLP + TE E+ L PFG + N + A IE D A M+ YY
Sbjct: 209 PSRVLFIRNLPLDITETEVANLALPFGVISNMV--ITKRSGLALIELMDQQAAENMVDYY 266
Query: 76 ASSSEPAQVRGKT-VYLQYSNRQEIVNNKTTADVAGNVL-------LVTIEG--TDARLV 125
+ P +RGK V + +S + T+ VA ++ L ++ T+ R V
Sbjct: 267 GTVYAPI-IRGKGPVVVSFSRHTSLTTTTTSQQVAEAIINANKRYGLSAVQDPITNPRSV 325
Query: 126 SIDV---------------LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
I V + +F+ FG + +I TF+ A ++F +A A
Sbjct: 326 -IRVQLYQTPVGVHFGYLQFYNLFAQFGTILRIVTFKTGTVPSAFIEFQSPISAHVAVLQ 384
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218
DG + P + GPC +R +S + + V+ + RD+T +P
Sbjct: 385 TDGANFTLEEAPGS-GPCIMRTDFSRQSTVEVRSEDANCRDFTRNPMP 431
>gi|431909696|gb|ELK12854.1| Heterogeneous nuclear ribonucleoprotein L [Pteropus alecto]
Length = 629
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 60/221 (27%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 274 KIAMFDKNGGLQALIQYP------------------------------------DVQTAV 297
+I +F KN G+QA+++YP V V
Sbjct: 220 RIVIFRKN-GVQAMVEYPLLGNGFLAAGALKAGRGATLSTSVYTGCLPCAKCLHSVMGEV 278
Query: 298 V-------AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS-----TPM 345
V AK +L G IY G C L I Y++ T L++ N+ + DYT P+ P
Sbjct: 279 VSKPSAQRAKASLNGADIYS-GCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPG 337
Query: 346 VN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
N QP +LG P G + Y+ + PPPP
Sbjct: 338 SNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 378
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 58/251 (23%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD--VAGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTIL-NPIYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQF------------------------------- 158
L+ + + G V +I F K G QA+V++
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEYPLLGNGFLAAGALKAGRGATLSTSVYTGCLP 266
Query: 159 ------------SDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS 206
+A AK +L+G I G CTL+I Y+ T L+V
Sbjct: 267 CAKCLHSVMGEVVSKPSAQRAKASLNGADI-------YSGCCTLKIEYAKPTRLNVFKND 319
Query: 207 HRSRDYTNPYL 217
+ DYTNP L
Sbjct: 320 QDTWDYTNPNL 330
>gi|407405096|gb|EKF30263.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 336
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 76 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A++ G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 134 QTGY-AEIDGRRVYIRYSNHQELTATQHTSK----TLLVSMFNTQYDVSAAAQITPMIVY 188
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+F +G V KI K QALVQF TA + K+ L G+ P
Sbjct: 189 QIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQ-------PVT 241
Query: 185 MGPC---TLRITYSAHTDL 200
+G TL I +S D+
Sbjct: 242 IGDTVTFTLDIQFSRMDDI 260
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 243 SNVLLASIENMQYAVTLD------VLHMVFSAFGPVQKIAMFDKN-------GGLQALIQ 289
S LL S+ N QY V+ +++ +F +G VQKI + KN +QAL+Q
Sbjct: 162 SKTLLVSMFNTQYDVSAAAQITPMIVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQ 221
Query: 290 YPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHTDL 326
+ TA K L+G I D L I +SR D+
Sbjct: 222 FDSKVTAENVKSILQGQPVTIGDTVTFTLDIQFSRMDDI 260
>gi|407844094|gb|EKG01787.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 325
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 76 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A++ G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 134 QTGY-AEIDGRRVYIRYSNHQELTATQHTSK----TLLVSMFNTQYDVSAAAQITPMIVY 188
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+F +G V KI K QALVQF TA + K+ L G+ P
Sbjct: 189 QIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQ-------PVT 241
Query: 185 MGPC---TLRITYSAHTDL 200
+G TL I +S D+
Sbjct: 242 IGDTVTFTLDIQFSRMDDI 260
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 243 SNVLLASIENMQYAVTLD------VLHMVFSAFGPVQKIAMFDKN-------GGLQALIQ 289
S LL S+ N QY V+ +++ +F +G VQKI + KN +QAL+Q
Sbjct: 162 SKTLLVSMFNTQYDVSAAAQITPMIVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQ 221
Query: 290 YPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHTDL 326
+ TA K L+G I D L I +SR D+
Sbjct: 222 FDSKVTAENVKSILQGQPVTIGDTVTFTLDIQFSRMDDI 260
>gi|71423973|ref|XP_812637.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70877443|gb|EAN90786.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 325
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 76 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-----ARLVSIDVLH 131
+ A++ G+ VY++YSN QE+ + T+ LLV++ T A ++ +++
Sbjct: 134 QTGY-AEIDGRRVYIRYSNHQELTATQHTSK----TLLVSMFNTQYDVSAAAQITPMIVY 188
Query: 132 LVFSAFGFVHKITTFEKTAG-------FQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184
+F +G V KI K QALVQF TA + K+ L G+ P
Sbjct: 189 QIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQFDSKVTAENVKSILQGQ-------PVT 241
Query: 185 MGPC---TLRITYSAHTDL 200
+G TL I +S D+
Sbjct: 242 IGDTVTFTLDIQFSRMDDI 260
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 243 SNVLLASIENMQYAVTLD------VLHMVFSAFGPVQKIAMFDKN-------GGLQALIQ 289
S LL S+ N QY V+ +++ +F +G VQKI + KN +QAL+Q
Sbjct: 162 SKTLLVSMFNTQYDVSAAAQITPMIVYQIFGNYGSVQKIVVLPKNESSQRNHNRVQALVQ 221
Query: 290 YPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHTDL 326
+ TA K L+G I D L I +SR D+
Sbjct: 222 FDSKVTAENVKSILQGQPVTIGDTVTFTLDIQFSRMDDI 260
>gi|146197853|dbj|BAF57638.1| hnRNP L protein [Dugesia japonica]
Length = 543
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 217 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
L + +ID +S G+ + + VL I N Y++T+DVL+ + S +G V +I
Sbjct: 56 LSFSQQSIDEFKSISKPNFGRNI---TKVLHFLITNAVYSITVDVLNKICSPYGKVARIY 112
Query: 277 MFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+ KN ++ALI++ A + KE L+G+ IY G C L +SYS+ + ++ N+
Sbjct: 113 IGKKNDQDNSIEALIEFSTDNDAKIVKENLDGNDIYSGC-CSLKLSYSKIHKIHVEKNDS 171
Query: 334 RSRDYTL-PSTPMV 346
S DYTL P T ++
Sbjct: 172 ESFDYTLVPKTGLL 185
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 125 VSIDVLHLVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+++DVL+ + S +G V +I +K +AL++FS A K LDG I
Sbjct: 93 ITVDVLNKICSPYGKVARIYIGKKNDQDNSIEALIEFSTDNDAKIVKENLDGNDIYS--- 149
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G C+L+++YS + V+ S DYT
Sbjct: 150 ----GCCSLKLSYSKIHKIHVEKNDSESFDYT 177
>gi|312107424|ref|XP_003150915.1| hypothetical protein LOAG_15376 [Loa loa]
gi|307753920|gb|EFO13154.1| hypothetical protein LOAG_15376, partial [Loa loa]
Length = 121
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
Q S+V+HLRN+P + T+ EL+ P+GK+VN G RNQAF+E+ D A +++
Sbjct: 17 QQISRVVHLRNIPSDMTDLELVHFCMPYGKLVNYLLLKG--RNQAFVEYEDERSAQTLVT 74
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
+ P +R +T++ Q+S QE+ N
Sbjct: 75 VNIAC--PVAIRDRTIFCQFSTHQELKTN 101
>gi|313237439|emb|CBY12627.1| unnamed protein product [Oikopleura dioica]
Length = 873
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
D K P +VLL +I + Y +T +L + S GPV +I +F K +QA+I++ +
Sbjct: 691 DSKNPNPPGHVLLLTILDAMYPITTKLLERICSYAGPVLRIVIFRKK-SVQAMIEFDSIV 749
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
A AK AL G IY G C + + Y++ L++ N+D +RD+++
Sbjct: 750 GAQRAKAALNGVDIYR-GCCTIKVEYAKPQSLNVFKNDDNTRDFSV 794
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ-AFIEFADLNQAIA 70
Y QPP L ++P + ++ I LG G + + N + N AF F+ N +
Sbjct: 614 YYQPP-----LSSVPEDQSDLSQITLG---GAIESLSLNHQSRFNIFAFRHFSSSNHCLR 665
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDV 129
MIS + + G+ + ++ + + G+VLL+TI DA ++ +
Sbjct: 666 MISPHNRQNHRNNRHGR------DDDKKNEEDSKNPNPPGHVLLLTI--LDAMYPITTKL 717
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L + S G V +I F K + QA+++F A AK AL+G I R G CT
Sbjct: 718 LERICSYAGPVLRIVIFRKKS-VQAMIEFDSIVGAQRAKAALNGVDIYR-------GCCT 769
Query: 190 LRITYSAHTDLSVKFQSHRSRDYT 213
+++ Y+ L+V +RD++
Sbjct: 770 IKVEYAKPQSLNVFKNDDNTRDFS 793
>gi|358341535|dbj|GAA29842.2| polypyrimidine tract-binding protein 1, partial [Clonorchis
sinensis]
Length = 520
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 30/178 (16%)
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ------------EIVNNKTTA---DVA 109
L+ AI M+SYY +RG+T+ +Q+S Q E +NN D++
Sbjct: 4 LDSAIQMVSYYREYQ--VTLRGRTLIMQFSKHQHLELMSENSQIVEAINNANCIVQQDLS 61
Query: 110 G-------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
G +VL V I+ + ++ +LH +F +G + +I TF K + L++F +
Sbjct: 62 GANSGVPNSVLRVIIDYIMGQQINHTILHKIFYRYGKILRIITFPKNNQYHGLIEFENHI 121
Query: 163 TASSA---KNALDGRSIPRYLLPENM--GPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
A A L R P++L +N+ G C+L + +S + L V+ +S + RDY N
Sbjct: 122 HAFVAMLVSVGLTKRHSPKHLNGQNIYTGCCSLLVEFSKNRGPLEVRHESDKCRDYIN 179
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK------------EALEGHCI 308
+LH +F +G + +I F KN LI++ + A VA + L G I
Sbjct: 88 ILHKIFYRYGKILRIITFPKNNQYHGLIEFENHIHAFVAMLVSVGLTKRHSPKHLNGQNI 147
Query: 309 YDGGFCKLHISYSRHTD-LSIKVNNDRSRDY 338
Y G C L + +S++ L ++ +D+ RDY
Sbjct: 148 YTGC-CSLLVEFSKNRGPLEVRHESDKCRDY 177
>gi|386768315|ref|NP_725913.2| smooth, isoform P [Drosophila melanogaster]
gi|383302600|gb|AAM68420.2| smooth, isoform P [Drosophila melanogaster]
Length = 434
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
EN + DVLH + G V +I +F KNG +QA++++ ++ A A+E L G IY
Sbjct: 42 ENDVHMHARDVLHKICHPHGQVLRIVIFKKNG-VQAMVEFDNLDAATRARENLNGADIY- 99
Query: 311 GGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 369
G C L I Y++ L++ N D S DYTL ST + +P +LG
Sbjct: 100 AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL-STGEILPKPPLLGP-------------- 144
Query: 370 GAQFAPPPPEQPMMHQPTAAGW 391
GA F PP P H T W
Sbjct: 145 GAAF--PPFGAPEYHTTTPENW 164
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
D + + DVLH + G V +I F+K G QA+V+F + + A+ A+ L+G I
Sbjct: 44 DVHMHARDVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI---- 98
Query: 181 LPENMGPCTLRITYSAHTDLSV-KFQSHRSRDYT 213
G CTL+I Y+ L+V K + S DYT
Sbjct: 99 ---YAGCCTLKIDYAKPEKLNVYKNEPDTSWDYT 129
>gi|226468142|emb|CAX76298.1| Regulator of differentiation 1 [Schistosoma japonicum]
Length = 495
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 32/173 (18%)
Query: 65 LNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEI---------------VNNKTTADVA 109
L AI M+SYY +RG+T+ +QYS Q + N D++
Sbjct: 4 LESAIMMVSYYREYQ--VTLRGRTLVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLS 61
Query: 110 G-------NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTE 162
G VL V ++ + ++ +LH +F +G + +I T+ K + LV+F +
Sbjct: 62 GANSGMPTTVLRVVVDNIMGQQINHTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHI 121
Query: 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD-LSVKFQSHRSRDYTN 214
A A L+G++I G C+LR+ +S + L V+ +S + RDY N
Sbjct: 122 HAFVAMLHLNGQNIY-------TGCCSLRVQFSKNRGPLEVRQESEKCRDYLN 167
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 200 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN-MQYAVT 258
L +++ H+ + + + + +A+ + L G + VL ++N M +
Sbjct: 26 LVMQYSKHQHLELHSENTSIGNAIQNANCIVQQDLSGANSGMPTTVLRVVVDNIMGQQIN 85
Query: 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318
+LH +F +G + +I + KN L+++ + A VA L G IY G C L +
Sbjct: 86 HTILHKIFYRYGKILRIVTYLKNNQYHGLVEFGNHIHAFVAMLHLNGQNIYT-GCCSLRV 144
Query: 319 SYSRHTD-LSIKVNNDRSRDY 338
+S++ L ++ +++ RDY
Sbjct: 145 QFSKNRGPLEVRQESEKCRDY 165
>gi|242049838|ref|XP_002462663.1| hypothetical protein SORBIDRAFT_02g029880 [Sorghum bicolor]
gi|241926040|gb|EER99184.1| hypothetical protein SORBIDRAFT_02g029880 [Sorghum bicolor]
Length = 918
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 34/296 (11%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P + L + NLP TE +L+ L P G + G+ R+ AF+ F +A A +
Sbjct: 41 PETNTLWVGNLPLHVTEGDLLALFGPHGALDCALARAGS-RSYAFLLFRSPAEARAAVE- 98
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
++ +V+G + +++ + V N L V G+ + VS + L F
Sbjct: 99 ---ATRGEKVKGAAMRTEFARPAKAVRN----------LWV---GSISPSVSKEELEEEF 142
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
FG V + + A + F E A SA +L+G+++ L + R +
Sbjct: 143 QKFGKVEGVAFSQDQT--SAYIDFEKLEDAISAHRSLNGKTLGGKELCVDFQRSKGRAEW 200
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQ 254
S + + + PV + S G+ ++ +P +NVL
Sbjct: 201 SDASSFNGRVSG-----------PVGDKRGSGPPKGSAGIRMREAQP-TNVLWVGFPGSY 248
Query: 255 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
A++ D L SAFG V I +F A +++ +V A AK L+GH D
Sbjct: 249 KAISEDTLKQAMSAFGVVTNIKIFQTR--QYAFVEFANVAEAYNAKMNLDGHLFND 302
>gi|339254280|ref|XP_003372363.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967235|gb|EFV51692.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 284
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+HLRNLP TE EL++ +GK+ K + +NQ F++FA + A A+IS A
Sbjct: 104 SRVVHLRNLPSNLTEVELVQHFISYGKI--EKVLLLKGKNQGFLQFATITSARALIS--A 159
Query: 77 SSSEPAQVRGKTVYLQYS 94
P +RGKT++ QYS
Sbjct: 160 VDENPVVIRGKTIFCQYS 177
>gi|82794317|ref|XP_728389.1| neural polypyrimidine tract binding protein [Plasmodium yoelii
yoelii 17XNL]
gi|23484718|gb|EAA19954.1| neural polypyrimidine tract binding protein [Plasmodium yoelii
yoelii]
Length = 387
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 41/239 (17%)
Query: 125 VSIDVLHLVFSAFGFVHKITTF-EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPE 183
V I++++ +FS G V KI T +KT+ FQALVQ E A A L R+I
Sbjct: 5 VDIELIYYLFSKCGIVEKIITISKKTSIFQALVQLESIEVAKEAIKTLHNRNIYD----- 59
Query: 184 NMGPCTLRITYSAHTDLSVKFQSHRSRDYT--NP--------------YLPVAPSAIDAS 227
G TL+I YS +L +K + ++ DYT NP LP P I +
Sbjct: 60 --GCNTLQIQYSFLKELIIKNNNSQAWDYTISNPQKNKNNFSFQMSHGVLPTPPRNIKET 117
Query: 228 GQLS-VGLDGKKLEPESN------VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK 280
+G K ++ E+ VL+ +Y+ ++ L +FS +G V +I + +
Sbjct: 118 ELYKLLGRKFKIVDFETKNASKTPVLICYNIPKEYS-DVNKLFNLFSIYGYVSRIKILRE 176
Query: 281 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK--LHISYSRHTDLSIKVNNDRSRD 337
ALIQY + + +A+E C+ C+ L + +S+ D+ I D+SRD
Sbjct: 177 KPD-SALIQYSNYLFSSMAQE-----CLQHAKICQNILELHFSKIYDIKISY-QDKSRD 228
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKEALEGHCIYDG 311
MQY V +++++ +FS G V+KI K + QAL+Q ++ A A + L IYDG
Sbjct: 1 MQYPVDIELIYYLFSKCGIVEKIITISKKTSIFQALVQLESIEVAKEAIKTLHNRNIYDG 60
Query: 312 GFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN 347
C L I YS +L IK NN ++ DYT+ S P N
Sbjct: 61 --CNTLQIQYSFLKELIIKNNNSQAWDYTI-SNPQKN 94
>gi|324510343|gb|ADY44324.1| Heterogeneous nuclear ribonucleoprotein L [Ascaris suum]
Length = 400
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + E S VL+ ++ N+ + ++V+ + + +G V++IAM + G+QAL+++ D+Q
Sbjct: 19 GLETEHASRVLILTVYNVCQPIDINVIFQICAPYGVVKRIAMLHR-FGVQALVEFDDMQM 77
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK + G IY G C L + +++ +++ N DYT TP P + Q
Sbjct: 78 AKNAKRGINGADIYHGC-CTLKVEFAKPDHVNVTANTSMQWDYTTGLTPGFIDYPHTIQQ 136
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 86 GKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145
G+ YS ++I + A VL++T+ + + I+V+ + + +G V +I
Sbjct: 2 GQAALFNYSTSKKIQRVGLETEHASRVLILTVYNV-CQPIDINVIFQICAPYGVVKRIAM 60
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ 205
+ G QALV+F D + A +AK ++G I G CTL++ ++ ++V
Sbjct: 61 LHRF-GVQALVEFDDMQMAKNAKRGINGADIYH-------GCCTLKVEFAKPDHVNVTAN 112
Query: 206 SHRSRDYTNPYLP 218
+ DYT P
Sbjct: 113 TSMQWDYTTGLTP 125
>gi|145478107|ref|XP_001425076.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392144|emb|CAK57678.1| unnamed protein product [Paramecium tetraurelia]
Length = 361
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 11/172 (6%)
Query: 240 EPESNVLLASIENMQYAVTLD--VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
+P + +LL + ++ + TL+ +H F+ FG + KI +F+K +A +++ ++ +A+
Sbjct: 7 DPPNKILLLILNSLPSSFTLNNQFIHQKFNQFGDINKILIFEKGKTTKAFVEFHELNSAI 66
Query: 298 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQP 357
AK+ L G C GG +H S ++ +L I V+N R DYT S+ NS + +
Sbjct: 67 QAKKQLNG-CNIQGGKMNIHFSRLKNLNLEI-VDNSRGTDYTQASSNSQNSDSMLNSRTE 124
Query: 358 VPMVGATANQYNGAQFAPPPPEQPMMHQ------PTAAGWGAVPPASQSMPM 403
+ N + Q +P P+ ++ ++ G + Q+MP+
Sbjct: 125 ENIQFDLTNHISSTQ-SPRANSSPIRNEQINRLLESSDGEDDLKIWKQTMPL 175
>gi|298707512|emb|CBJ30114.1| human PTB (hnRNP) homolog family member (ptb-1) [Ectocarpus
siliculosus]
Length = 921
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
NVLL + ++ + VT+ L +FS FG V KI MFDK G QAL+Q +V TA+ A EA
Sbjct: 87 NVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAA 146
Query: 304 E 304
+
Sbjct: 147 D 147
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 110 GNVLLVTIEGTD-ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168
GNVLLV + TD V+I L +FS FG V KI F+K +G QALVQ ++ TA SA
Sbjct: 86 GNVLLVRV--TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAH 143
Query: 169 NALDGRSIPRYLLP 182
A D +S P +P
Sbjct: 144 EAADMQSGPYGSIP 157
>gi|308509800|ref|XP_003117083.1| hypothetical protein CRE_02201 [Caenorhabditis remanei]
gi|308241997|gb|EFO85949.1| hypothetical protein CRE_02201 [Caenorhabditis remanei]
Length = 273
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T P SKV+H+RN+P + + EL++L +G V N G ++QAF+E+ + A A +
Sbjct: 130 TTPVSKVVHVRNIPPDLVDLELMQLCIQYGPVSNYMMLKG--KSQAFVEYEEETSAAAFV 187
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA 106
+ + ++ P Q+RG+T++ QYS +E+ +K A
Sbjct: 188 T--SMTAVPIQIRGRTLFAQYSTHRELKFDKNKA 219
>gi|320165836|gb|EFW42735.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 455
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 17/204 (8%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
PPS+VLH+R LP + +L G VV+ + ++QA IE ++ A+ +I++
Sbjct: 41 PPSRVLHVRKLPDGISSPQLSSAISELGGVVSFVIMM-PQKHQALIEMVSVSDAMTVIAH 99
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGN---VLLVTIEGTDARLVSIDVLH 131
A P ++G+ + YS QE+ GN +LL T+ ++ +V H
Sbjct: 100 CA--QHPVYLQGQQIMFNYSKSQELKRTSGEQPDEGNPAKILLFTVF-NPIYPITCEVSH 156
Query: 132 LVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
SA+ V + + + + + T +A+ A++G I G CTL+
Sbjct: 157 TSPSAYRLVSQARPLPQRRASRRWLSLTLLRTTLAARRAINGADI-------YGGCCTLK 209
Query: 192 ITYSAHTDLSVKFQSHRSRDYTNP 215
I YSAH LS Q R RD P
Sbjct: 210 IDYSAHHHLS---QDDRGRDNRGP 230
>gi|410591659|sp|E9PT37.1|RBM20_RAT RecName: Full=RNA-binding protein 20; AltName: Full=RNA-binding
motif protein 20
Length = 1207
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S SS F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 506 SASSGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 563
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A A AM+ YY +PA + G+ + ++ S R +E+ K +VA
Sbjct: 564 MAYTEAAQAMVQYY--QEKPALINGEKLLIRMSTRYKELQLKKPGKNVA 610
>gi|255982592|ref|NP_001101081.2| RNA-binding protein 20 [Rattus norvegicus]
gi|189170132|gb|ACD80091.1| RNA binding motif protein 20 [Rattus norvegicus]
Length = 1207
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S SS F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 506 SASSGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 563
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A A AM+ YY +PA + G+ + ++ S R +E+ K +VA
Sbjct: 564 MAYTEAAQAMVQYY--QEKPALINGEKLLIRMSTRYKELQLKKPGKNVA 610
>gi|397493591|ref|XP_003817687.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Pan paniscus]
Length = 505
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 72 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 127
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 128 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ-NPLYPITVDVLYT 184
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 185 VCNPVGKVQRIVIFKRN-GIQAMV 207
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 163 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 212
>gi|395731919|ref|XP_002812155.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Pongo abelii]
Length = 509
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 131
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 132 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 188
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 189 VCNPVGKVQRIVIFKRN-GIQAMV 211
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 167 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 216
>gi|109102687|ref|XP_001109883.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 1
[Macaca mulatta]
Length = 508
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMV 210
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 215
>gi|410955436|ref|XP_003984359.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Felis catus]
Length = 510
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 77 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 132
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 133 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 189
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 190 VCNPVGKVQRIVIFKRN-GIQAMV 212
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 168 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 217
>gi|403269680|ref|XP_003926844.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Saimiri
boliviensis boliviensis]
gi|33518884|gb|AAQ20083.1| stromal RNA regulating factor [Homo sapiens]
Length = 508
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMV 210
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 215
>gi|354497495|ref|XP_003510855.1| PREDICTED: probable RNA-binding protein 20-like [Cricetulus
griseus]
Length = 1198
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S SS F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 482 SASSGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 539
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A A AM+ YY S A + G+ + ++ S R +E+ K +VA
Sbjct: 540 MAYTEAAQAMVQYYQEKS--AMINGEKLLIRMSKRYKELQLKKPGKNVA 586
>gi|296224059|ref|XP_002757888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Callithrix jacchus]
Length = 509
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 12/144 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 76 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 131
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 132 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 188
Query: 133 VFSAFGFVHKITTFEKTAGFQALV 156
V + G V +I F++ G QA+V
Sbjct: 189 VCNPVGKVQRIVIFKRN-GIQAMV 211
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 167 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 216
>gi|358256069|dbj|GAA57625.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 739
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+ T PS + + LP C+E++LI + + FG+V N K V N A +EF +++
Sbjct: 39 YLITTHPSCTIVVYELPTGCSEQDLISIFRQFGEVKNAK--VVCNGKAALVEFCEISSPT 96
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT-----DARL 124
++ + + P V V L++S+ ++ + G +L E T D
Sbjct: 97 RLV--HMAKINPFHVGPNRVRLEFSSETIPFSSSRQPEPKGTLLPSGEEATCILHLDVAA 154
Query: 125 ----VSIDVLHLVFSAFGFVHKITTFEKTA--GFQALVQFSDTETASSAKNALDGRSIPR 178
+++DV+ + G + ++ +K + LV+F + A+ AK LDG I
Sbjct: 155 ADYPITVDVIRSICEPHGKLVRVFIGKKNVDRSLEVLVEFESPKDAAKAKEHLDGADI-- 212
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
G C+L T+S + V S D++ P
Sbjct: 213 -----YSGCCSLTATFSKVQKVHVTKNDSESWDFSGP 244
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 44/252 (17%)
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+F FG V G ALV+F + + + + + P ++GP +R+
Sbjct: 66 IFRQFGEVKNAKVV--CNGKAALVEFCEISSPTRLVHMAK-------INPFHVGPNRVRL 116
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
+S+ T + F S R + LP SG E + +L +
Sbjct: 117 EFSSET---IPFSSSRQPEPKGTLLP--------SG-----------EEATCILHLDVAA 154
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 310
Y +T+DV+ + G + ++ + KN L+ L+++ + A AKE L+G IY
Sbjct: 155 ADYPITVDVIRSICEPHGKLVRVFIGKKNVDRSLEVLVEFESPKDAAKAKEHLDGADIY- 213
Query: 311 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST----PMVNSQPSILGQQPVPMVGATAN 366
G C L ++S+ + + N+ S D++ P+ P+ N+ S ++G+ A
Sbjct: 214 SGCCSLTATFSKVQKVHVTKNDSESWDFSGPNACVQGPLGNTAASRT------LLGSGAP 267
Query: 367 QYNGAQFAPPPP 378
+PPPP
Sbjct: 268 LCPTVSQSPPPP 279
>gi|74209138|dbj|BAE24961.1| unnamed protein product [Mus musculus]
Length = 809
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYY- 576
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
+PA + G+ + ++ S R +E+ K +VA
Sbjct: 577 -QEKPAIINGEKLLIRMSTRYKELQLKKPGKNVA 609
>gi|344249836|gb|EGW05940.1| putative RNA-binding protein 20 [Cricetulus griseus]
Length = 756
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 9 QFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQ 67
QF + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A
Sbjct: 412 QFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTN--YILMKSTNQAFLEMAYTEA 469
Query: 68 AIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A AM+ YY S A + G+ + ++ S R +E+ K +VA
Sbjct: 470 AQAMVQYYQEKS--AMINGEKLLIRMSKRYKELQLKKPGKNVA 510
>gi|405972821|gb|EKC37569.1| Heterogeneous nuclear ribonucleoprotein L [Crassostrea gigas]
Length = 186
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+V+H+R L E++L + + FG V + + ++QA +EF D++ A + ++Y
Sbjct: 26 PSQVVHVRGLAENILEQDLKDSVQHFGPV--SYVVLMPRKHQALVEFEDISGATSCVNY- 82
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHLV 133
+ V G+ Y +S Q I D G ++LL T+ +++DV+H +
Sbjct: 83 -AEENQIYVAGQPAYFNFSTSQRIQRPAGGEDHRGGNHILLFTVLNPQYP-ITVDVMHKI 140
Query: 134 FSAFGFVHKITTFEKTAGFQAL 155
+A+G V +I F+K G QA+
Sbjct: 141 CTAYGQVQRIVIFKKN-GVQAM 161
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
+++LL ++ N QY +T+DV+H + +A+G VQ+I +F KN G+QA+
Sbjct: 118 NHILLFTVLNPQYPITVDVMHKICTAYGQVQRIVIFKKN-GVQAM 161
>gi|341888865|gb|EGT44800.1| hypothetical protein CAEBREN_15314 [Caenorhabditis brenneri]
Length = 229
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T P SKV+H+RN+P + + EL++L +G V N G ++QAF+E+ + A A +
Sbjct: 117 TTPVSKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKG--KSQAFVEYEEEASAAAFV 174
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIV--NNKTTADVAGNVLLVTIEG 119
+ ++ P Q+RG+T++ QYS +E+ NK +D + LLV + G
Sbjct: 175 T--GMTAVPIQIRGRTLFAQYSTHRELKFDKNKAVSDTDVSFLLVFLAG 221
>gi|283046745|ref|NP_001164318.1| RNA-binding protein 20 [Mus musculus]
gi|410516938|sp|Q3UQS8.3|RBM20_MOUSE RecName: Full=RNA-binding protein 20; AltName: Full=RNA-binding
motif protein 20
Length = 1199
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYY- 576
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
+PA + G+ + ++ S R +E+ K +VA
Sbjct: 577 -QEKPAIINGEKLLIRMSTRYKELQLKKPGKNVA 609
>gi|146197802|dbj|BAF57617.1| hnRNP L protein [Dugesia japonica]
Length = 537
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYD 310
+Y +T+D++ + FG + KI + KN ++ L+++ + A AKEAL G IY
Sbjct: 2 FKYPITVDIIKQICLKFGKLLKIFIGKKNQDNVVECLVEFEKISEAKAAKEALHGEDIY- 60
Query: 311 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNG 370
G C L + YS+ +++ + N+D S D++ G VP + + N
Sbjct: 61 SGCCSLDVKYSKMSNVPVFKNDDESWDFSKSQVKQ--------GILKVPPSNGSVSSNNV 112
Query: 371 AQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPP 412
F P P+ ++ P PP PM NH +PP
Sbjct: 113 NVFTPTNPQ---LYSPVY----NFPP-----PMSYNHMPVPP 142
>gi|326678801|ref|XP_683222.4| PREDICTED: probable RNA-binding protein 20-like [Danio rerio]
Length = 781
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 16 PSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P +V+H+ NLP CTE ++I LG PFGKV N + + +QAF+E A + A AM+ Y
Sbjct: 201 PGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMRSTHQAFLEMAYVEAAQAMVQY 258
Query: 75 YASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADV 108
Y +PA + G+ + ++ S R +E+ K DV
Sbjct: 259 Y--QLQPATINGQKLLIRMSKRYKELQLKKPGKDV 291
>gi|145496290|ref|XP_001434136.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401259|emb|CAK66739.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 255 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314
+ +T + LH F+ FG ++KI +F++ +A ++Y ++++A+ A++ L G I G
Sbjct: 24 FPLTNEFLHKKFNEFGDIKKILIFERGKTNKAFVEYHNLKSAISARKQLNGLNIQGG--- 80
Query: 315 KLHISYSRHTDLSIK-VNNDRSRDYTLPSTPMVNSQPSIL 353
K+ I YSR +L+++ V+N R DYT S+ NS SIL
Sbjct: 81 KMIIHYSRLKNLNLEIVDNSRGTDYTQASSNSQNS-DSIL 119
>gi|431912753|gb|ELK14771.1| Heterogeneous nuclear ribonucleoprotein L-like protein [Pteropus
alecto]
Length = 484
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQAL 155
V + G V +I F++ G QA+
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAM 209
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAM 209
>gi|444709487|gb|ELW50499.1| putative RNA-binding protein 20 [Tupaia chinensis]
Length = 1148
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S S+ F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 374 SASAGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 431
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR 96
A A AM+ YY S A + G+ V ++ S R
Sbjct: 432 MAYTEAAQAMVQYYQEKS--AVINGEKVLIRMSKR 464
>gi|389593937|ref|XP_003722217.1| putative RNA binding protein [Leishmania major strain Friedlin]
gi|321438715|emb|CBZ12475.1| putative RNA binding protein [Leishmania major strain Friedlin]
Length = 1384
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 6 SQPQFRYTQPPSKVLHL----RNLPWECTEEELIELGKPFGKVVNT----KCNVGANRNQ 57
S P R+ QPP+ H+ R+LP E EE+L + PFG++VN+ + G +
Sbjct: 146 SPPSLRHLQPPANHSHVNLFVRHLPLELNEEKLRAMFAPFGEIVNSAIMRNIHTGVSLGT 205
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRG-KTVYLQYSNRQEIVNNKTTADVAGNVLLVT 116
AF+ FA +A+ + +A V G K V +Q++ R+ + + D + +
Sbjct: 206 AFVRFAKHEEAMRAMEAFAGGRS---VTGSKRVTVQWARREH--DKAPSGDERRKMRKLF 260
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
I + V+ ++L +F+ G V ++T TA A+ Q
Sbjct: 261 IRNV-PKDVTQEMLMALFTQHGSVKSVSTHRDTAAANAVSQ 300
>gi|431895444|gb|ELK04960.1| Putative RNA-binding protein 20 [Pteropus alecto]
Length = 1096
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 420 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 477
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
S A + G+ + ++ S R +E+ K +VA
Sbjct: 478 EKS--AMINGEKLLIRMSKRYKELQLKKPGKNVA 509
>gi|449275589|gb|EMC84402.1| putative RNA-binding protein 20 [Columba livia]
Length = 1192
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 481 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYSEAAQAMVQYY- 537
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+PA + + ++ S R +E+ K +VA ++ I R D+L V S
Sbjct: 538 -KEKPAMINDDKLLIRMSKRYKELQLKKPGKNVA--AIIQDIHSQRER----DLLREVDS 590
Query: 136 AFG 138
+G
Sbjct: 591 RYG 593
>gi|195151588|ref|XP_002016721.1| GL11732 [Drosophila persimilis]
gi|194110568|gb|EDW32611.1| GL11732 [Drosophila persimilis]
Length = 102
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
DVLH + G V +I +F KNG +QA++++ ++ A A+E L G IY G C L I
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKNG-VQAMVEFDNLDAATRARENLNGADIY-AGCCTLKID 58
Query: 320 YSRHTDLSIKVNN-DRSRDYTLPSTPMVNS 348
Y++ L++ N D S DYTL + ++ S
Sbjct: 59 YAKPEKLNVYKNEPDTSWDYTLSTGEILPS 88
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
DVLH + G V +I F+K G QA+V+F + + A+ A+ L+G I G
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGC 52
Query: 188 CTLRITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSA 223
CTL+I Y+ L+V K + S DYT + PSA
Sbjct: 53 CTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPSA 89
>gi|194755561|ref|XP_001960052.1| GF13175 [Drosophila ananassae]
gi|190621350|gb|EDV36874.1| GF13175 [Drosophila ananassae]
Length = 97
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319
DVLH + G V +I +F KNG +QA++++ ++ A A+E L G IY G C L I
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKNG-VQAMVEFDNLDAATRARENLNGADIY-AGCCTLKID 58
Query: 320 YSRHTDLSIKVNN-DRSRDYTLPSTPMVNS 348
Y++ L++ N D S DYTL + ++ S
Sbjct: 59 YAKPEKLNVYKNEPDTSWDYTLSTGEILPS 88
Score = 48.5 bits (114), Expect = 0.007, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
DVLH + G V +I F+K G QA+V+F + + A+ A+ L+G I G
Sbjct: 1 DVLHKICHPHGQVLRIVIFKKN-GVQAMVEFDNLDAATRARENLNGADI-------YAGC 52
Query: 188 CTLRITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSA 223
CTL+I Y+ L+V K + S DYT + PSA
Sbjct: 53 CTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPSA 89
>gi|401415848|ref|XP_003872419.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488643|emb|CBZ23890.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1384
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 8 PQFRYTQPPSKVLHL----RNLPWECTEEELIELGKPFGKVVNT----KCNVGANRNQAF 59
P R+ QPP H+ R+LP E EE+L + PFG++VN+ + G + AF
Sbjct: 148 PSSRHLQPPPNHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGTAF 207
Query: 60 IEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEG 119
+ FA +A+ + +A K V +Q++ R+ + + D + + I
Sbjct: 208 VRFAKHEEAMRAMEAFAGGRP--MTGSKRVTVQWARREH--DKAPSGDERRKMRKLFIRN 263
Query: 120 TDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+ V+ ++L +FS G V ++T TA A+ Q
Sbjct: 264 V-PKDVTQEMLMALFSQHGLVKSVSTHRDTAAANAVSQ 300
>gi|350593070|ref|XP_001925009.4| PREDICTED: probable RNA-binding protein 20 [Sus scrofa]
Length = 1175
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 472 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 529
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 530 EKS--AMINGEKLLIRMSKR 547
>gi|440906853|gb|ELR57070.1| Putative RNA-binding protein 20, partial [Bos grunniens mutus]
Length = 1155
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 463 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYR 520
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 521 EKS--AMINGEKLLIRMSKR 538
>gi|338716450|ref|XP_003363456.1| PREDICTED: probable RNA-binding protein 20 [Equus caballus]
Length = 1224
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 516 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 573
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 574 EKS--AMINGEKLLIRMSKR 591
>gi|296472625|tpg|DAA14740.1| TPA: RNA binding motif protein 20 [Bos taurus]
Length = 1210
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYR 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AMINGEKLLIRMSKR 593
>gi|300797636|ref|NP_001179542.1| probable RNA-binding protein 20 [Bos taurus]
Length = 1210
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYR 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AMINGEKLLIRMSKR 593
>gi|348578985|ref|XP_003475262.1| PREDICTED: probable RNA-binding protein 20-like [Cavia porcellus]
Length = 1175
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S +S F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 450 SAASGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 507
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR 96
A A AM+ YY S A + G+ + ++ S R
Sbjct: 508 MAYTEAAQAMVQYYQEKS--AVINGEKLLIRMSKR 540
>gi|426253103|ref|XP_004020240.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 20 [Ovis aries]
Length = 1214
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 512 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 569
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 570 EKS--AMINGEKLLIRMSKR 587
>gi|410976123|ref|XP_003994473.1| PREDICTED: probable RNA-binding protein 20 [Felis catus]
Length = 1171
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 463 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 520
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 521 EKS--AMINGEKLLIRMSKR 538
>gi|334314078|ref|XP_003339987.1| PREDICTED: probable RNA-binding protein 20 [Monodelphis domestica]
Length = 1252
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 522 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 579
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
S A + G+ + ++ S R +E+ K +VA
Sbjct: 580 EKS--AVINGEKLLIRMSKRYKELQLKKPGKNVA 611
>gi|398018805|ref|XP_003862567.1| RNA binding protein, putative [Leishmania donovani]
gi|322500797|emb|CBZ35874.1| RNA binding protein, putative [Leishmania donovani]
Length = 1385
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 6 SQPQFRYTQPPSKVLHL----RNLPWECTEEELIELGKPFGKVVNT----KCNVGANRNQ 57
S P R QPP+ H+ R+LP E EE+L + PFG++VN+ + G +
Sbjct: 146 SPPSSRQLQPPANHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGT 205
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRG-KTVYLQYSNRQEIVNNKTTADVAGNVLLVT 116
AF+ FA +A+ + +A V G K V +Q++ R+ + + D + +
Sbjct: 206 AFVRFAKHEEAMRAMEAFAGGRP---VTGSKRVTVQWARREH--DKAPSGDERRKMRKLF 260
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
I + V+ ++L +FS G V ++T TA A+ Q
Sbjct: 261 IRNV-PKDVTQEMLMALFSQHGSVKSVSTHRDTAAANAVSQ 300
>gi|332212803|ref|XP_003255508.1| PREDICTED: RNA-binding protein 20 [Nomascus leucogenys]
Length = 1228
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>gi|339898804|ref|XP_001466666.2| putative RNA binding protein [Leishmania infantum JPCM5]
gi|321398517|emb|CAM69709.2| putative RNA binding protein [Leishmania infantum JPCM5]
Length = 1389
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 6 SQPQFRYTQPPSKVLHL----RNLPWECTEEELIELGKPFGKVVNT----KCNVGANRNQ 57
S P R QPP+ H+ R+LP E EE+L + PFG++VN+ + G +
Sbjct: 146 SPPSSRQLQPPANHSHVNLFVRHLPLELNEEKLRAMFTPFGEIVNSAIMRNIHTGVSLGT 205
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRG-KTVYLQYSNRQEIVNNKTTADVAGNVLLVT 116
AF+ FA +A+ + +A V G K V +Q++ R+ + + D + +
Sbjct: 206 AFVRFAKHEEAMRAMEAFAGGRP---VTGSKRVTVQWARREH--DKAPSGDERRKMRKLF 260
Query: 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
I + V+ ++L +FS G V ++T TA A+ Q
Sbjct: 261 IRNV-PKDVTQEMLMALFSQHGSVKSVSTHRDTAAANAVSQ 300
>gi|397510485|ref|XP_003825626.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 20
[Pan paniscus]
Length = 1225
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 516 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 573
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 574 EKS--AVINGEKLLIRMSKR 591
>gi|332835299|ref|XP_508032.3| PREDICTED: probable RNA-binding protein 20 [Pan troglodytes]
Length = 1227
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>gi|327267525|ref|XP_003218551.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
20-like [Anolis carolinensis]
Length = 1193
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 16 PSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ Y
Sbjct: 492 PGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQY 549
Query: 75 YASSSEPAQVRGKTVYLQYSNR 96
Y +PA + + ++ S R
Sbjct: 550 Y--KEKPAVINDDKLLIRMSKR 569
>gi|389602048|ref|XP_001566495.2| putative RNA binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505295|emb|CAM40007.2| putative RNA binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1383
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 11 RYTQPPSKVLHL----RNLPWECTEEELIELGKPFGKVVNT----KCNVGANRNQAFIEF 62
R+ QPPS H+ R+LP E EE+L + PFG +VN+ + G + AF+ F
Sbjct: 150 RHLQPPSNHSHVNLFVRDLPLELNEEKLRAMFTPFGDIVNSAIMRNIHTGISLGTAFVRF 209
Query: 63 ADLNQAIAMISYYASSSEPAQVRG-KTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD 121
+ +A+ + +A V G K V +Q++ R+ + + D + + I
Sbjct: 210 SKHEEAMRAMEAFAGGRS---VTGSKRVTVQWARREH--DKAPSGDERRKMRKLFIRNV- 263
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
+ V+ ++L +FS +G V ++T TA A+ Q
Sbjct: 264 PKDVTQEMLMTLFSQYGPVKSVSTHRDTAAANAVSQ 299
>gi|344274393|ref|XP_003409001.1| PREDICTED: probable RNA-binding protein 20-like [Loxodonta
africana]
Length = 1425
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 5 SSQPQFRYTQPPS---KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
S+ P +TQ + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+
Sbjct: 706 SASPGTNFTQRKAGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFL 763
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR 96
E A A AM+ YY S A + G+ + ++ S R
Sbjct: 764 EMAYTEAAQAMVQYYQEKS--AVINGEKLLIRMSKR 797
>gi|297687372|ref|XP_002821189.1| PREDICTED: probable RNA-binding protein 20 [Pongo abelii]
Length = 1227
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>gi|403259521|ref|XP_003922258.1| PREDICTED: probable RNA-binding protein 20 [Saimiri boliviensis
boliviensis]
Length = 1219
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 510 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 567
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 568 EKS--AVINGEKLLIRMSKR 585
>gi|297301843|ref|XP_001087170.2| PREDICTED: probable RNA-binding protein 20 [Macaca mulatta]
Length = 1235
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 526 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 583
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 584 EKS--AVINGEKLLIRMSKR 601
>gi|395828098|ref|XP_003787223.1| PREDICTED: probable RNA-binding protein 20 [Otolemur garnettii]
Length = 1219
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 516 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 573
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 574 EKS--AVINGEKLLIRMSKR 591
>gi|426366180|ref|XP_004050140.1| PREDICTED: RNA-binding protein 20 [Gorilla gorilla gorilla]
Length = 1227
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>gi|351706804|gb|EHB09723.1| Putative RNA-binding protein 20, partial [Heterocephalus glaber]
Length = 1165
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S +S F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 440 SAASGTSFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 497
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A A AM+ +Y S A + G+ + ++ S R QE+ K VA
Sbjct: 498 MAYTEAAQAMVQFYQEKS--AVINGEKLLIRMSKRYQELQLKKPGKTVA 544
>gi|197276594|ref|NP_001127835.1| RNA-binding protein 20 [Homo sapiens]
gi|317373512|sp|Q5T481.3|RBM20_HUMAN RecName: Full=RNA-binding protein 20; AltName: Full=RNA-binding
motif protein 20
gi|194338895|gb|ACF49364.1| RNA binding protein [Homo sapiens]
Length = 1227
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>gi|402881480|ref|XP_003904299.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 20
[Papio anubis]
Length = 1232
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 523 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 580
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 581 EKS--AVINGEKLLIRMSKR 598
>gi|149050609|gb|EDM02782.1| heterogeneous nuclear ribonucleoprotein L-like (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 261
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 179
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 180 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 236
Query: 133 VFSAFGFVHKITTFEKTAGFQAL 155
V + G V +I F++ G QA+
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAM 258
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA+
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAM 258
>gi|224052803|ref|XP_002194174.1| PREDICTED: RNA-binding protein 20 [Taeniopygia guttata]
Length = 1198
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 7 QPQFRYTQPPS----------KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANR 55
QP ++ PPS +V+H+ NLP CTE ++I LG PFGKV N + +
Sbjct: 467 QPGPTFSSPPSGFPQRKSTLGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKST 524
Query: 56 NQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVAGNVLL 114
NQAF+E A A AM+ YY +PA + + ++ S R +E+ K +VA +
Sbjct: 525 NQAFLEMAYSEAAQAMVQYY--KEKPAMINDDKLLIRMSKRYKELQLKKPGKNVAAIIQD 582
Query: 115 VTIEGTDARLVSID 128
+ + L +D
Sbjct: 583 IHSQRERDLLREVD 596
>gi|355562776|gb|EHH19370.1| hypothetical protein EGK_20061, partial [Macaca mulatta]
Length = 1182
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 473 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 530
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 531 EKS--AVINGEKLLIRMSKR 548
>gi|119569941|gb|EAW49556.1| hCG2036763 [Homo sapiens]
Length = 1244
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 507 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 564
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 565 EKS--AVINGEKLLIRMSKR 582
>gi|296221207|ref|XP_002756638.1| PREDICTED: probable RNA-binding protein 20 [Callithrix jacchus]
Length = 1234
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 525 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 582
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 583 EKS--AVINGEKLLIRMSKR 600
>gi|395502142|ref|XP_003755444.1| PREDICTED: probable RNA-binding protein 20 [Sarcophilus harrisii]
Length = 1186
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 479 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 536
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
S A + G+ + ++ S R +E+ K +VA
Sbjct: 537 EKS--AVINGEKLLIRMSKRYKELQLKKPGKNVA 568
>gi|345792797|ref|XP_544017.3| PREDICTED: probable RNA-binding protein 20 [Canis lupus familiaris]
Length = 1233
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 524 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 581
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 582 EKS--AVINGEKLLIRMSKR 599
>gi|414886318|tpg|DAA62332.1| TPA: hypothetical protein ZEAMMB73_716132 [Zea mays]
Length = 915
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 50/304 (16%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74
P + L + NLP TE +L+ L P G + G+ R+ AF+ F +A +
Sbjct: 37 PETNTLWVGNLPSHVTEGDLLALFGPHGALDCALARAGS-RSYAFVLFRSPAEAREAV-- 93
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
++ +V+G + +++ V N ++ ++ +EG F
Sbjct: 94 --EATRGEKVKGAAMRTEFARPARAVRNLWVGGISPSISKEELEGE-------------F 138
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
FG V + + A + F E A SA +L+G+ +
Sbjct: 139 LKFGKVEGVAFSQDQT--SAYIDFEKLEDAISAHRSLNGKML------------------ 178
Query: 195 SAHTDLSVKFQSHRSR------DYTNPYLPVAPSAIDASGQL--SVGLDGKKLEPESNVL 246
+L V FQ + R N +P SG L S G+ ++ +P +NVL
Sbjct: 179 -GGKELCVDFQRSKGRAEWSEASSFNGRVPGPVGDKRGSGPLKSSAGVRMREAQP-TNVL 236
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 306
+ + L S FG V KI +F A +++ +V A AK L+GH
Sbjct: 237 WVGFPGSYRVIDEEALKHAMSVFGVVTKIKVFQTR--QYAFVEFANVAEACNAKMNLDGH 294
Query: 307 CIYD 310
D
Sbjct: 295 LFND 298
>gi|388858385|emb|CCF48076.1| uncharacterized protein [Ustilago hordei]
Length = 644
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI-AMISY 74
P + L +R++ +E E + + + FG++ T ++ R AFI + DL A AM++
Sbjct: 254 PCRTLFVRSINFETDSEFVKQQFEKFGEI-KTFFDMVEKRGIAFITYYDLRAARDAMLAM 312
Query: 75 YASSSEPAQVRGKTVYLQYS-NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLV 133
A G+ + + YS R+E + D L ++G + L S D +H V
Sbjct: 313 KG-----APFGGRPINIHYSLPREEDKAQRCDRDKNQGTLFSVLKGANETL-SDDAVHEV 366
Query: 134 FSAFGFVHKITTF--EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
FS FG V K+ + +K + F V++ D+ A + L+GR YL G L+
Sbjct: 367 FSEFGDVKKVRDYPGQKNSRF---VEYFDSRACQLAHDQLNGRP---YL----DGQWDLK 416
Query: 192 ITYSAHTDLSVKF 204
+ TD +++
Sbjct: 417 FAWDVVTDEDLEW 429
>gi|145478423|ref|XP_001425234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392303|emb|CAK57836.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 255 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314
+ +T + LH F+ FG ++KI +F++ +A +++ ++++A+ A++ L G I G
Sbjct: 24 FPLTNEYLHKKFNEFGDLKKILIFERGKTNKAFVEFHNLKSAIAARKQLNGLNIQGG--- 80
Query: 315 KLHISYSRHTDLSIK-VNNDRSRDYTLPSTPMVNSQPSIL 353
K+ I YSR +L+++ V+N R DYT S+ NS SIL
Sbjct: 81 KMIIHYSRLKNLNLEIVDNSRGTDYTQASSNSQNS-DSIL 119
>gi|301755542|ref|XP_002913621.1| PREDICTED: probable RNA-binding protein 20-like [Ailuropoda
melanoleuca]
Length = 1202
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 491 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 548
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 549 EKS--AVINGEKLLIRMSKR 566
>gi|387219209|gb|AFJ69313.1| polypyrimidine tract binding protein [Nannochloropsis gaditana
CCMP526]
Length = 324
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 336
MF+K G QAL+QYPDV +A A E + +Y + + YS H D+ ++ N DR+
Sbjct: 1 MFNKGAGNQALVQYPDVASAQAAFEQADHRNMYTDSNL-IRVGYSTHHDIKVRANTDRTW 59
Query: 337 DYTLPST 343
DYT T
Sbjct: 60 DYTKKKT 66
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ 205
F K AG QALVQ+ D +A +A D R++ N+ +R+ YS H D+ V+
Sbjct: 2 FNKGAGNQALVQYPDVASAQAAFEQADHRNM---YTDSNL----IRVGYSTHHDIKVRAN 54
Query: 206 SHRSRDYTN 214
+ R+ DYT
Sbjct: 55 TDRTWDYTK 63
>gi|410917077|ref|XP_003972013.1| PREDICTED: probable RNA-binding protein 20-like [Takifugu rubripes]
Length = 1125
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 6 SQPQFRYTQPPSK-----------VLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGA 53
S+P F QP SK V+H+ NLP CTE ++I LG PFGKV N +
Sbjct: 456 SEPGFASHQPESKPFPPRKVTAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMR 513
Query: 54 NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADV 108
+ +QAF+E A + A AM+ YY + PA + + + ++ S R +E+ K DV
Sbjct: 514 STHQAFLEMAYVEAAQAMVQYYQLT--PAMINNQKLLIRMSKRYKELQLKKPGKDV 567
>gi|226487298|emb|CAX75514.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 197
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+RN+P + TE E+ PFG + N + NQA IE L +++
Sbjct: 47 RLEASPSRVIHIRNMPADATENEIALFAIPFGLLKNMV--LSKRNNQALIEMHVLEESVQ 104
Query: 71 MISYYASSSEPAQVRGKTVYLQYS 94
++++Y P + GK + Q+S
Sbjct: 105 LVAHYLKY--PVTLHGKHLIFQFS 126
>gi|355783096|gb|EHH65017.1| hypothetical protein EGM_18356, partial [Macaca fascicularis]
Length = 618
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 9 RVVHICNLPEGSCTENDVINLGLPFGKVTNY--ILMKSTNQAFLEMAYTEAAQAMVQYYQ 66
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 67 EKS--AVINGEKLLIRMSKR 84
>gi|326923965|ref|XP_003208203.1| PREDICTED: probable RNA-binding protein 20-like [Meleagris
gallopavo]
Length = 1364
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 18 KVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 653 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYSEAAQAMVQYY- 709
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVAG 110
+PA + + ++ S R +E+ K +VA
Sbjct: 710 -KEKPAMINDDKLLIRMSKRYKELQLKKPGKNVAA 743
>gi|297828039|ref|XP_002881902.1| hypothetical protein ARALYDRAFT_483451 [Arabidopsis lyrata subsp.
lyrata]
gi|297327741|gb|EFH58161.1| hypothetical protein ARALYDRAFT_483451 [Arabidopsis lyrata subsp.
lyrata]
Length = 902
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 93/436 (21%), Positives = 169/436 (38%), Gaps = 81/436 (18%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S L + +L E TE +L EL +G + + V ++R AFI + + +A+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--DRITVYSSRGFAFIYYRRVEEAVAA----K 70
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ + A + G + ++Y+ + + + +V S D L FS
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPSV-------------SKDDLEEEFSK 117
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + + A + + + + A AK +++G+ MG LR+ +
Sbjct: 118 FGKIEDFRFLRERK--TAFIDYYEMDDALQAK-SMNGK---------RMGGSFLRVDF-L 164
Query: 197 HTDLSVKFQ---SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK-KLEPESNVLLASIEN 252
+ K Q S+ +R+ + P P + D DGK ++P + + N
Sbjct: 165 RSQAPRKEQWAGSYDNRNGNMNHKPQHPHSYD---------DGKGDVQPSKVLWIGYPPN 215
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
+LH +G +++I + + +L+++ + A AKE ++G +
Sbjct: 216 ATQCNDEQMLHNAMILYGEIERIKCYPSSHF--SLVEFRSAEEARHAKEGIQGRLFNN-- 271
Query: 313 FCKLHISYSRHT------DLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ--------QPV 358
++ I YS D S RSR T M N+ PS +
Sbjct: 272 -PRIKIMYSNDELPPEPDDTSFYSGMKRSR------TDMFNNDPSFISSPHSTGIPGSMR 324
Query: 359 PMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVP----PASQSMPMMG-NHPYMPPG 413
P+ G+ YNG+++ ++P +P+A G G +P P P G HP
Sbjct: 325 PLRGSNERSYNGSEYNDVVGKEPNWRRPSANGTGILPSPTGPGILPSPAQGMRHP----- 379
Query: 414 SMPMGPGMMQMHMPGQ 429
M PG + + P Q
Sbjct: 380 -MRSNPGSWEEYDPAQ 394
>gi|363735340|ref|XP_421755.3| PREDICTED: probable RNA-binding protein 20 [Gallus gallus]
Length = 1203
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 18 KVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 498 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYSEAAQAMVQYY- 554
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVAG 110
+PA + + ++ S R +E+ K +VA
Sbjct: 555 -KEKPAMINDDKLLIRMSKRYKELQLKKPGKNVAA 588
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 65/317 (20%)
Query: 12 YTQPPSKV----LHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFA 63
Y+QP ++ L++RNL T+EEL++ PFGK+++ K G N+ F+ ++
Sbjct: 298 YSQPSEEIDMSSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYS 357
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
+ ++A I + V GK + ++ S ++N L+ I+ +
Sbjct: 358 NSHEAANAIIHLNGH----LVEGKKMEVRVSGVSPALSNSAVESHTDARLIKEIDMANLY 413
Query: 124 LV----SIDVLHL--VFSAFGFV--HKITTFEKT---AGFQALVQFSDTETASSAKNALD 172
+ SID L +F FG + ++ + T G V+F+D++ A+ A +D
Sbjct: 414 VCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMD 473
Query: 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232
G + L +R+ + + S LP+ PS
Sbjct: 474 GALVEGETL-------VVRVAGLSSSASSPAVHG----------LPI-PS---------- 505
Query: 233 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ-ALIQYP 291
PE N I N+ + D++ +F FG + K+ M L+ +L+ Y
Sbjct: 506 --------PEINKSRIYITNLPRSTNADMMVKLFVPFGQISKVVM-----NLEYSLVYYA 552
Query: 292 DVQTAVVAKEALEGHCI 308
DV +AV A + ++G+ I
Sbjct: 553 DVASAVKAIKHMDGYMI 569
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTK----CNVGANRNQAFIEFADLNQAIAMIS 73
L++ NLP +LIEL PFG++V +K C G ++ F+++ D + A A I+
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAIN 263
>gi|281347756|gb|EFB23340.1| hypothetical protein PANDA_001427 [Ailuropoda melanoleuca]
Length = 594
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 10 RVVHICNLPEGSCTENDVINLGLPFGKVTNY--ILMKSTNQAFLEMAYTEAAQAMVQYYQ 67
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 68 EKS--AVINGEKLLIRMSKR 85
>gi|345324051|ref|XP_003430775.1| PREDICTED: probable RNA-binding protein 20 [Ornithorhynchus
anatinus]
Length = 1226
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 2 ASVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
+S ++ PQ + T +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+
Sbjct: 511 SSGTNYPQRKVTA--GRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFL 566
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
E A A AM+ YY S A + + + ++ S R +E+ K +VA
Sbjct: 567 EMAYTEAAQAMVQYYQEKS--AVINDEKLLIRMSKRYKELQLKKPGKNVA 614
>gi|395751132|ref|XP_002829227.2| PREDICTED: heterogeneous nuclear ribonucleoprotein L isoform 2,
partial [Pongo abelii]
Length = 248
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTAD--VAGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166
L+ + + G V +I F K G QA+V++ E S
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEYPLLENRCS 246
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
++VLL +I N Y++T DVL+ + + GPVQ+I +F KN G+QA+++YP
Sbjct: 192 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEYP 239
>gi|118384092|ref|XP_001025199.1| polypyrimidine tract-binding protein 1 (PTB) [Tetrahymena
thermophila]
gi|89306966|gb|EAS04954.1| polypyrimidine tract-binding protein 1 (PTB) [Tetrahymena
thermophila SB210]
Length = 1302
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNA 170
+L++ E D ++ + D L +FS +GFV+K+ F+K T +A ++ + E+A AK A
Sbjct: 408 LLVIVFELKDLQITN-DQLQQIFSPYGFVNKVLIFQKSTDSTKAFIEMNSVESAKKAKEA 466
Query: 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDY 212
L+ IP LLP ++ YS TDL++ +DY
Sbjct: 467 LNRAKIP--LLPN--QKYKFKVHYSQTTDLNLCNYKTEGKDY 504
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVA 299
P S +L+ E +T D L +FS +G V K+ +F K+ +A I+ V++A A
Sbjct: 404 PSSVLLVIVFELKDLQITNDQLQQIFSPYGFVNKVLIFQKSTDSTKAFIEMNSVESAKKA 463
Query: 300 KEALEGHCI--YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS 348
KEAL I K + YS+ TDL++ +DY L S + NS
Sbjct: 464 KEALNRAKIPLLPNQKYKFKVHYSQTTDLNLCNYKTEGKDYRLSSNKITNS 514
>gi|145536093|ref|XP_001453774.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421507|emb|CAK86377.1| unnamed protein product [Paramecium tetraurelia]
Length = 386
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 240 EPESNVLLASIENM--QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
+P S +LL I + + +T D L F +G V+KI +F++ +A ++Y +V+ A+
Sbjct: 5 DPPSKILLLIITYLPQSFPLTNDFLFETFKQYGEVKKILIFERGKTNKAFVEYNEVKHAI 64
Query: 298 VAKEALEGHCIY-DGGFCKLHISYSRHTDLSIKVNNDRSRDY------------------ 338
A+ + G + GG +H S + DL + V++ R +Y
Sbjct: 65 SARRNMIGKSLTPQGGRLLIHYSRLKQLDLEV-VDHTRGTEYCSDDEETQPEQKYPLKSM 123
Query: 339 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 372
TLP++ ++ P ++ Q + + NQ+ GAQ
Sbjct: 124 TLPNSIQIS--PPLIKPQSIEQISNNGNQFKGAQ 155
>gi|260784453|ref|XP_002587281.1| hypothetical protein BRAFLDRAFT_237696 [Branchiostoma floridae]
gi|229272423|gb|EEN43292.1| hypothetical protein BRAFLDRAFT_237696 [Branchiostoma floridae]
Length = 304
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
++L+G IY+ C L I YS+ L++K NND+SRDYT P P + QPS+
Sbjct: 4 QSLDGQNIYNA-CCTLRIDYSKLETLNVKYNNDKSRDYTRPELPAGDGQPSL 54
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 44/179 (24%)
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA---PSAIDASG---------QLSV--- 232
CTLRI YS L+VK+ + +SRDYT P LP PS A G LS+
Sbjct: 16 CTLRIDYSKLETLNVKYNNDKSRDYTRPELPAGDGQPSLEQAMGLGTFDPGPPLLSLPSV 75
Query: 233 --GLDGK--------------------KLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 270
GL G L+ +VLL S N + VT D L +F +G
Sbjct: 76 PGGLTGSIPLAGTIPNLSAASAAARLAGLQQAGSVLLVSNLNTEM-VTPDALFTLFGVYG 134
Query: 271 PVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 328
V ++ +F K ALIQ + A A + L ++ + ++ S+H + +
Sbjct: 135 DVHRVKILFAKKD--NALIQMAEPHQANTAMQHLNNLRVWGK---NIRVTLSKHNQVQL 188
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA- 68
F PPS LHL N+P TEEELI+L G V +R A ++ + +A
Sbjct: 218 FLNIYPPSDTLHLSNIPASTTEEELIDLFTSTGGAVQAFKFFAKDRKMALLKMSSTEEAV 277
Query: 69 ---IAMISYYASSSEPAQV 84
I M +Y S S +V
Sbjct: 278 HSLIKMHNYQLSGSNHLKV 296
>gi|348525068|ref|XP_003450044.1| PREDICTED: probable RNA-binding protein 20-like [Oreochromis
niloticus]
Length = 1094
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + +QAF+E A + A AM+ YY
Sbjct: 465 RVVHICNLPEGSCTETDVINLGIPFGKVTNYI--LMRSTHQAFLEMAYVEAAHAMVQYYQ 522
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVAGNVLLVT 116
+ PA + + + ++ S R +E+ K DV + +T
Sbjct: 523 LT--PAMINNQKLLIRMSKRYKELQLKKPGKDVQSIIQDIT 561
>gi|149025818|gb|EDL82061.1| polypyrimidine tract binding protein 2, isoform CRA_a [Rattus
norvegicus]
Length = 322
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 27 QALDGQNIYNA-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 77
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 48/198 (24%)
Query: 161 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220
++T S ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 19 SDTFYSLLQALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSG 71
Query: 221 PS------AIDAS-----------GQLS------------------VGLDGKKLEPESNV 245
AI A+ G LS VG+ G + +
Sbjct: 72 DGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVL 131
Query: 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L++++ + VT L +F +G VQ++ + N ALIQ D + +A L G
Sbjct: 132 LVSNLN--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNG 188
Query: 306 HCIYDGGFCKLHISYSRH 323
+Y + ++ S+H
Sbjct: 189 QKMYGK---IIRVTLSKH 203
>gi|414886317|tpg|DAA62331.1| TPA: hypothetical protein ZEAMMB73_716132 [Zea mays]
Length = 947
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 125/323 (38%), Gaps = 56/323 (17%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF---ADLNQAI-- 69
P + L + NLP TE +L+ L P G + G+ R+ AF+ F A+ +A+
Sbjct: 37 PETNTLWVGNLPSHVTEGDLLALFGPHGALDCALARAGS-RSYAFVLFRSPAEAREAVEA 95
Query: 70 ---------AMISYYAS-----SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLV 115
AM + +A + E A +TV ++ + R ++ AD A V +
Sbjct: 96 TRGEKVKGAAMRTEFARPVFVVADENAT---RTVLVEDTGRMPCLSIVNLADQARAVRNL 152
Query: 116 TIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175
+ G +S + L F FG V + + A + F E A SA +L+G+
Sbjct: 153 WVGGISPS-ISKEELEGEFLKFGKVEGVAFSQDQT--SAYIDFEKLEDAISAHRSLNGKM 209
Query: 176 IPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSR------DYTNPYLPVAPSAIDASGQ 229
+ +L V FQ + R N +P SG
Sbjct: 210 L-------------------GGKELCVDFQRSKGRAEWSEASSFNGRVPGPVGDKRGSGP 250
Query: 230 L--SVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
L S G+ ++ +P +NVL + + L S FG V KI +F A
Sbjct: 251 LKSSAGVRMREAQP-TNVLWVGFPGSYRVIDEEALKHAMSVFGVVTKIKVFQTR--QYAF 307
Query: 288 IQYPDVQTAVVAKEALEGHCIYD 310
+++ +V A AK L+GH D
Sbjct: 308 VEFANVAEACNAKMNLDGHLFND 330
>gi|123474487|ref|XP_001320426.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121903231|gb|EAY08203.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 413
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
S V+ I +Q ++ + ++ S +G V+KI F+KNG AL+Q DV+ A +A
Sbjct: 105 SRVICLQILKLQISLGIYDIYDECSNYGTVEKIICFEKNGKF-ALVQMHDVKEAALALAN 163
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
L Y F ++ I YS + D+ I+ NN +S D+T P
Sbjct: 164 LSNSSRYLPNF-QIKIQYSHNQDIIIQFNNAKSFDFTHP 201
>gi|350034148|dbj|GAA34297.1| heterogeneous nuclear ribonucleoprotein L [Clonorchis sinensis]
Length = 735
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQA 286
Q+ G E ++ +LL I Y +T+DV+ + G V +I + KN ++A
Sbjct: 130 QIDTGRPRPPSEEQTKILLLDITAADYPITVDVIRSICQPHGKVLRIFIGKKNIDRSVEA 189
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
L++ + A KE ++G IY G C L ++YS+ + + + N+ S D++
Sbjct: 190 LVELDTSEDARKVKEQIDGADIY-YGCCTLKVTYSKISRVHVTKNDSESWDFSC 242
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 23/212 (10%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T P+ + LP C+E +L + FG++ +TK + + ++F++++ ++
Sbjct: 42 TTHPNCTIIAYELPDGCSENDLFAIFNQFGEIKHTK--LVCSGKAGLVQFSEISSPTRLV 99
Query: 73 SYYASSSEPAQVRGKTVYLQYS---------NRQEIVNNKTTADVAGNVLLVTIEGTDAR 123
+ + P + V L++S ++ + + ++ +LL+ I D
Sbjct: 100 --HMAKINPFYIGSNHVCLEFSAESIAPLLVSQIDTGRPRPPSEEQTKILLLDITAADYP 157
Query: 124 LVSIDVLHLVFSAFGFVHKITTFEKTA--GFQALVQFSDTETASSAKNALDGRSIPRYLL 181
+++DV+ + G V +I +K +ALV+ +E A K +DG I
Sbjct: 158 -ITVDVIRSICQPHGKVLRIFIGKKNIDRSVEALVELDTSEDARKVKEQIDGADI----- 211
Query: 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYT 213
G CTL++TYS + + V S D++
Sbjct: 212 --YYGCCTLKVTYSKISRVHVTKNDSESWDFS 241
>gi|222423512|dbj|BAH19726.1| AT2G43410 [Arabidopsis thaliana]
Length = 901
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 58/391 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S L + +L E TE +L EL +G + + V ++R AFI + + +A+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--DRITVYSSRGFAFIYYRHVEEAVAA----K 70
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ + A + G + ++Y+ + + + NV S D L FS
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNV-------------SKDGLEEEFSK 117
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + + A + + + + A AK +++G+ MG LR+ +
Sbjct: 118 FGKIEDFRFLRERK--TAFIDYYEMDDALQAK-SMNGKP---------MGGSFLRVDF-L 164
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAP----SAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
+ K Q S D N + P S D G + +P + +
Sbjct: 165 RSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDV---------QPSKVLWIGFPPT 215
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
+LH FG ++++ + AL+++ + A KE L+G +
Sbjct: 216 ATQCNDEQILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN-- 271
Query: 313 FCKLHISYS------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGAT 364
++ I YS D S RSR + P S P G P+ G
Sbjct: 272 -PRIKIMYSNDGLPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTN 330
Query: 365 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVP 395
YNGA++ ++P +P+A G G +P
Sbjct: 331 ERSYNGAEYNDVVGKEPNWRRPSANGTGILP 361
>gi|145511796|ref|XP_001441820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409081|emb|CAK74423.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 15/129 (11%)
Query: 240 EPESNVLLASIENMQ--YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
+P S +LL I + + + D+L F +G ++KI +F++ +A ++Y D++ A+
Sbjct: 7 DPPSKILLLVITQLSPTFPLCNDLLFEQFGKYGDIKKILIFERGKANKAFVEYYDIKHAI 66
Query: 298 VAKEALEGHCIYDG-GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS-------- 348
A++ G + +G G +H S ++ DL + V+ R DYT T + NS
Sbjct: 67 EARKDKIGKYLAEGEGKLTIHFSRLKNLDLEV-VDKSRGTDYT--QTSITNSDVVKHSNT 123
Query: 349 -QPSILGQQ 356
P+IL QQ
Sbjct: 124 DDPNILRQQ 132
>gi|20453185|gb|AAM19833.1| At2g43410/T1O24.15 [Arabidopsis thaliana]
gi|27764946|gb|AAO23594.1| At2g43410/T1O24.15 [Arabidopsis thaliana]
Length = 901
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 58/391 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S L + +L E TE +L EL +G + + V ++R AFI + + +A+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--DRITVYSSRGFAFIYYRHVEEAVAA----K 70
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ + A + G + ++Y+ + + + NV S D L FS
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNV-------------SKDDLEEEFSK 117
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + + A + + + + A AK +++G+ MG LR+ +
Sbjct: 118 FGKIEDFRFLRERK--TAFIDYYEMDDALQAK-SMNGKP---------MGGSFLRVDF-L 164
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAP----SAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
+ K Q S D N + P S D G + +P + +
Sbjct: 165 RSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDV---------QPSKVLWIGFPPT 215
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
+LH FG ++++ + AL+++ + A KE L+G +
Sbjct: 216 ATQCNDEQILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN-- 271
Query: 313 FCKLHISYS------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGAT 364
++ I YS D S RSR + P S P G P+ G
Sbjct: 272 -PRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTN 330
Query: 365 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVP 395
YNGA++ ++P +P+A G G +P
Sbjct: 331 ERSYNGAEYNDVVGKEPNWRRPSANGTGILP 361
>gi|145331109|ref|NP_001078046.1| Flowering time control protein FPA [Arabidopsis thaliana]
gi|145331111|ref|NP_001078047.1| Flowering time control protein FPA [Arabidopsis thaliana]
gi|145331113|ref|NP_001078048.1| Flowering time control protein FPA [Arabidopsis thaliana]
gi|290463421|sp|Q8LPQ9.2|FPA_ARATH RecName: Full=Flowering time control protein FPA
gi|330255169|gb|AEC10263.1| Flowering time control protein FPA [Arabidopsis thaliana]
gi|330255170|gb|AEC10264.1| Flowering time control protein FPA [Arabidopsis thaliana]
gi|330255171|gb|AEC10265.1| Flowering time control protein FPA [Arabidopsis thaliana]
Length = 901
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 58/391 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S L + +L E TE +L EL +G + + V ++R AFI + + +A+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--DRITVYSSRGFAFIYYRHVEEAVAA----K 70
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ + A + G + ++Y+ + + + NV S D L FS
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNV-------------SKDDLEEEFSK 117
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + + A + + + + A AK +++G+ MG LR+ +
Sbjct: 118 FGKIEDFRFLRERK--TAFIDYYEMDDALQAK-SMNGKP---------MGGSFLRVDF-L 164
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAP----SAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
+ K Q S D N + P S D G + +P + +
Sbjct: 165 RSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDV---------QPSKVLWIGFPPT 215
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
+LH FG ++++ + AL+++ + A KE L+G +
Sbjct: 216 ATQCNDEQILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN-- 271
Query: 313 FCKLHISYS------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGAT 364
++ I YS D S RSR + P S P G P+ G
Sbjct: 272 -PRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTN 330
Query: 365 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVP 395
YNGA++ ++P +P+A G G +P
Sbjct: 331 ERSYNGAEYNDVVGKEPNWRRPSANGTGILP 361
>gi|307189437|gb|EFN73847.1| Polypyrimidine tract-binding protein 2 [Camponotus floridanus]
Length = 352
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL 239
CTLRI YS +L+VK+ + +SRDYTNP LP + +DA+ S+ L G+ L
Sbjct: 21 CTLRIDYSKMQNLNVKYNNDKSRDYTNPNLPTGDANLDAA---SLALGGELL 69
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 293 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 344
++ A ++L+G +Y+ C L I YS+ +L++K NND+SRDYT P+ P
Sbjct: 1 MKNARFLAQSLDGQNVYNS-CCTLRIDYSKMQNLNVKYNNDKSRDYTNPNLP 51
>gi|145526162|ref|XP_001448892.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416458|emb|CAK81495.1| unnamed protein product [Paramecium tetraurelia]
Length = 362
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 240 EPESNVLLASIENMQ--YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
+P S +LL I + + + D+L F+ +G ++KI +F++ +A ++Y DV+ A+
Sbjct: 7 DPPSKILLLVITQLSPTFPLCNDLLFEQFAKYGDIKKILIFERGKANKAFVEYYDVKHAI 66
Query: 298 VAKEALEGHCIYDG-GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNS-------Q 349
A++ G + +G G +H S ++ DL + V+ R DYT S+ ++
Sbjct: 67 EARKDKLGKYLAEGEGKLTIHFSRLKNLDLEV-VDKSRGTDYTQASSTNSDTMKHSNTDD 125
Query: 350 PSILGQQ 356
P++L QQ
Sbjct: 126 PNVLRQQ 132
>gi|432848554|ref|XP_004066403.1| PREDICTED: RNA-binding protein 20-like [Oryzias latipes]
Length = 1088
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + +QAF+E A A AM+ YY
Sbjct: 504 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMRSTHQAFLEMAYDEAAQAMVQYYQ 561
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADV 108
+ PA + + + ++ S R +E+ K DV
Sbjct: 562 LT--PAMINNQKLLIRMSKRYKELQLKKPGKDV 592
>gi|403169840|ref|XP_003329260.2| hypothetical protein PGTG_10312 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168444|gb|EFP84841.2| hypothetical protein PGTG_10312 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 698
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
P + L +RN+ +E +E+ E + G++ ++ + R AFI + DL +A M
Sbjct: 164 PCRTLFVRNVKYETDSQEVREKFEEMGEI-KIFFDLISTRGMAFITYYDL-RAATMAKER 221
Query: 76 ASSSEPAQVRGKTVYLQYS-NRQEIVNNKTTADVAGNVLLVTIEGTDA-RLVSIDVLHLV 133
++ V G+ + + YS + + + D L ++I TD R ++ L
Sbjct: 222 LQGTD---VSGRPIDVHYSLPKDNELERRCDRDKNQATLFLSI--TDGHRPINDSELRNK 276
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
F +G + I F K + +Q V++ DT SA ++LDG
Sbjct: 277 FETYGEIRSIKPF-KDSPYQRFVEYWDTRACESAHDSLDG 315
>gi|330794853|ref|XP_003285491.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
gi|325084582|gb|EGC38007.1| hypothetical protein DICPUDRAFT_149370 [Dictyostelium purpureum]
Length = 352
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYY 75
L + LP T E L L PFG++ + K N G +R F++F D +A Y
Sbjct: 19 LFVSFLPSTYTNESLKVLFSPFGEIDSCKVMVDLNTGLSRGFGFVKFKD----VASAQYA 74
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEI-------------VNNKTTADVAGNVLLVTIEGTDA 122
+S +V KT+ ++++N + I V+ T +A N + + T+
Sbjct: 75 INSMNGMKVDNKTLLVRFANSEPIQQQQQQQQQQQQSVDEANTNAIASNNVFIKGLPTE- 133
Query: 123 RLVSIDVLHLVFSAFGFV--HKITTFEKTAGF--QALVQFSDTETASSAKNALDGRSIPR 178
++D L +FS G + KI T T+ QALV++ D ++AS+A L+G
Sbjct: 134 --YTMDQLKALFSPHGEILESKILTDISTSASRGQALVRYGDVQSASNAVKELNG----- 186
Query: 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSR 210
Y++ + P ++ + K S R +
Sbjct: 187 YIIQDPDKPLIVKFAENDEEKKQSKLNSKRQK 218
>gi|294461076|gb|ADE76105.1| unknown [Picea sitchensis]
Length = 218
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+RY P+K++H+ +LP + TE+E+I +P G VV++K + QA + F + Q+
Sbjct: 130 YRYCCAPTKMIHVSSLPPDVTEDEIISHLEPHGNVVDSKLFEVNGKKQALVLFENEEQST 189
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +A++ + G T+ + +S Q I
Sbjct: 190 EALVSKHATT-----IDGSTIRISFSQLQSI 215
>gi|145516865|ref|XP_001444321.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411732|emb|CAK76924.1| unnamed protein product [Paramecium tetraurelia]
Length = 362
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 240 EPESNVLLASIENMQ--YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 297
+P S +LL + + + ++ ++L FS +G ++KI +F++ +A ++Y DV+ A+
Sbjct: 7 DPPSKILLLVMTQLSPTFPLSNELLFEQFSKYGDIKKILIFERGKANKAFVEYYDVKHAI 66
Query: 298 VAKEALEGHCIYDG-GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVN-------SQ 349
A++ G + +G G +H S ++ DL + V+ R DYT S+ +
Sbjct: 67 EARKDKLGKYLAEGEGKLTIHFSRLKNLDLEV-VDKSRGTDYTQASSTNSDLMKHSNTDD 125
Query: 350 PSILGQQ 356
P+IL QQ
Sbjct: 126 PNILRQQ 132
>gi|13435822|gb|AAH04763.1| Hnrpll protein, partial [Mus musculus]
Length = 340
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
G+QA++++ V A AK AL G IY G C L I Y+R T L++ N++ S DYT
Sbjct: 3 GIQAMVEFESVLCAQKAKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT--- 58
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGA--------- 393
P + + G+Q ++G + + + P P+ P+ G+
Sbjct: 59 KPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAY 115
Query: 394 -VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHM 426
+P AS S G+ P GS+ M G+ Q+ M
Sbjct: 116 PLPQASSSYMHGGS----PSGSVVMVSGLHQLKM 145
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 151 GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSR 210
G QA+V+F A AK AL+G I G CTL+I Y+ T L+V + S
Sbjct: 3 GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKIEYARPTRLNVIRNDNDSW 55
Query: 211 DYTNPYL 217
DYT PYL
Sbjct: 56 DYTKPYL 62
>gi|67616525|ref|XP_667492.1| RNA-binding protein [Cryptosporidium hominis TU502]
gi|54658648|gb|EAL37276.1| RNA-binding protein [Cryptosporidium hominis]
Length = 394
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L+L LP++ TE+ + EL +PFG + K V + AF+E+ D+ +A +
Sbjct: 74 SRTLYLCKLPYDMTEDSVRELCEPFGDL--KKVAVYPRKGIAFVEYFDIRKAEGARNTLK 131
Query: 77 SSSEPAQVRGKTVYLQYSNRQE--IVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
SS V+G+ + QYS ++ + + T + ++ TD + D +F
Sbjct: 132 SS----LVQGRIIDAQYSRGRDSRLSRDTNTGTLYIKPIVSNKTATDPN--TEDDYKELF 185
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
A+G V K+++ K + V+F D A +++ AL+G
Sbjct: 186 CAYGEVKKVSSNRKRES-EKFVEFYDIRGAEASQKALNG 223
>gi|323509073|dbj|BAJ77429.1| cgd3_2580 [Cryptosporidium parvum]
Length = 378
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L+L LP++ TE+ + EL +PFG + K V + AF+E+ D+ +A +
Sbjct: 58 SRTLYLCKLPYDMTEDSVRELCEPFGDL--KKVAVYPRKGIAFVEYFDIRKAEGARNTLK 115
Query: 77 SSSEPAQVRGKTVYLQYSNRQE----------------IVNNKTTADVAGNVLLVTIEGT 120
SS V+G+ + QYS ++ IV+NKT D
Sbjct: 116 SS----LVQGRIIDAQYSRGRDGRPSRDTNTGTLYIKPIVSNKTATDPN----------- 160
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+ D +F A+G V K+++ K + V+F D A +++ AL+G
Sbjct: 161 -----TEDDYKELFCAYGEVKKVSSNRKRES-EKFVEFYDIRGAEASQKALNG 207
>gi|410080932|ref|XP_003958046.1| hypothetical protein KAFR_0F03150 [Kazachstania africana CBS 2517]
gi|372464633|emb|CCF58911.1| hypothetical protein KAFR_0F03150 [Kazachstania africana CBS 2517]
Length = 275
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS++++L ++P++ TE+++++L G V N K G ++ AFIEF DL + +
Sbjct: 18 PPSRIVYLGSIPYDQTEQQILDLCNNVGPVTNLKMMFDPTTGKSKGYAFIEFKDLESSAS 77
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG 110
I Q+ + + YS +I N TT+ V+G
Sbjct: 78 AIRNLNG----YQLGSRFLKCGYSTNNDISNMNTTSTVSG 113
>gi|66359282|ref|XP_626819.1| RNA binding protein [Cryptosporidium parvum Iowa II]
gi|46228164|gb|EAK89063.1| RNA binding protein [Cryptosporidium parvum Iowa II]
gi|323510271|dbj|BAJ78029.1| cgd3_2580 [Cryptosporidium parvum]
Length = 394
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 39/173 (22%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L+L LP++ TE+ + EL +PFG + K V + AF+E+ D+ +A +
Sbjct: 74 SRTLYLCKLPYDMTEDSVRELCEPFGDL--KKVAVYPRKGIAFVEYFDIRKAEGARNTLK 131
Query: 77 SSSEPAQVRGKTVYLQYSNRQE----------------IVNNKTTADVAGNVLLVTIEGT 120
SS V+G+ + QYS ++ IV+NKT D
Sbjct: 132 SS----LVQGRIIDAQYSRGRDGRPSRDTNTGTLYIKPIVSNKTATDPN----------- 176
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
+ D +F A+G V K+++ K + V+F D A +++ AL+G
Sbjct: 177 -----TEDDYKELFCAYGEVKKVSSNRKRES-EKFVEFYDIRGAEASQKALNG 223
>gi|299469750|emb|CBN76604.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 515
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72
T PSKVLH+RN+ + + +L+ L FG+V K G QA ++ ++ A A +
Sbjct: 223 TPEPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSG----QALVQLPSVSVAKATM 278
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEI 99
+Y +EP ++ K VYL YS + I
Sbjct: 279 RHYEEDAEP-KIGQKRVYLNYSRSRSI 304
>gi|322802929|gb|EFZ23070.1| hypothetical protein SINV_06072 [Solenopsis invicta]
Length = 127
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANR 55
++ PS+V+H+RN+P E TE E+I LG PFG+V N G N+
Sbjct: 46 HSGKPSRVIHIRNIPNEVTEAEIIHLGLPFGRVTNVLVLKGKNQ 89
>gi|301627572|ref|XP_002942947.1| PREDICTED: probable RNA-binding protein 20-like [Xenopus (Silurana)
tropicalis]
Length = 1015
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ N+P C E +++ LG PFGKV N + + NQAF+E A A AM+ +Y
Sbjct: 379 RVVHICNIPEGSCNENDVVNLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAEAMVQFY- 435
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
+PA + + + ++ S R
Sbjct: 436 -QEKPAMINDEKLLIRMSKR 454
>gi|123491774|ref|XP_001325911.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908818|gb|EAY13688.1| hypothetical protein TVAG_371620 [Trichomonas vaginalis G3]
Length = 412
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
S FG V KI F+K+G AL+Q +Q A +A L ++ F KL I +S++ D+
Sbjct: 127 SLFGTVDKIICFEKSGKF-ALVQMHTIQDAGLALYNLSNCERHNPSF-KLRIQFSKNHDI 184
Query: 327 SIKVNNDRSRDYTLPSTPM 345
IK NN +S D+T PS +
Sbjct: 185 VIKFNNTKSFDFTQPSARL 203
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 18 KVLHLRNLP----WECTEEEL----IELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+V+H+ NLP W + IE FG NQA ++F A
Sbjct: 20 RVIHIMNLPPGSNWAQIKPYFFNFPIEFAHFFG-------------NQALLQFVTSKDAR 66
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSID 128
I +E + V +++S E++ + + + G L++ ++ RL + I
Sbjct: 67 NYIQ-----NERKIIDELNVKIEFSIIPELIYDDFES-IPGASLVICVQVNRLRLYLGIY 120
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMG 186
++ S FG V KI FEK+ F ALVQ + A A L R P +
Sbjct: 121 DIYDQCSLFGTVDKIICFEKSGKF-ALVQMHTIQDAGLALYNLSNCERHNPSF------- 172
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNP 215
LRI +S + D+ +KF + +S D+T P
Sbjct: 173 --KLRIQFSKNHDIVIKFNNTKSFDFTQP 199
>gi|402890608|ref|XP_003908575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like isoform 2
[Papio anubis]
Length = 403
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 55 RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NV 112
+ QA +EF +++ A +++ A EP + G+ + YS + I T D +G V
Sbjct: 6 KRQALVEFENIDSAKECVTFAAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKV 63
Query: 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
LL++I+ +++DVL+ V + G V +I F++ G QA+V
Sbjct: 64 LLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMV 105
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 293
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++ +V
Sbjct: 61 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVDRLNV 110
>gi|145532711|ref|XP_001452111.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419788|emb|CAK84714.1| unnamed protein product [Paramecium tetraurelia]
Length = 651
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 241 PESNVLLASIENMQYAVTL--DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVV 298
P +NV+L I N + TL D + VFS FG +Q++ +F+++ + I++ ++++A
Sbjct: 12 PNTNVILVVITN-KANKTLPHDKYYKVFSPFGTIQRMLIFERSLTWKTFIEFDNIESAFK 70
Query: 299 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 341
A+ + D +++ S+ T +S + NN DYT+P
Sbjct: 71 ARSQMNDKQFCDDTSLLMNVYASKLTYISFQENNVWGVDYTIP 113
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NV+LV I + + D + VFS FG + ++ FE++ ++ ++F + E+A A++
Sbjct: 15 NVILVVITNKANKTLPHDKYYKVFSPFGTIQRMLIFERSLTWKTFIEFDNIESAFKARSQ 74
Query: 171 LDGR 174
++ +
Sbjct: 75 MNDK 78
>gi|452004844|gb|EMD97300.1| hypothetical protein COCHEDRAFT_1164036 [Cochliobolus
heterostrophus C5]
Length = 475
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS ++++RNLPW + E+L+EL GKV + G +R +EF AD +I
Sbjct: 372 PSNIIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSI 431
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSN 95
A + Y P + Y++Y+N
Sbjct: 432 AKFTGYQYGGRPLGL----AYVKYTN 453
>gi|451853414|gb|EMD66708.1| hypothetical protein COCSADRAFT_158789 [Cochliobolus sativus
ND90Pr]
Length = 477
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS ++++RNLPW + E+L+EL GKV + G +R +EF AD +I
Sbjct: 374 PSNIIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSI 433
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSN 95
A + Y P + Y++Y+N
Sbjct: 434 AKFTGYQYGGRPLGL----AYVKYTN 455
>gi|322798025|gb|EFZ19869.1| hypothetical protein SINV_08848 [Solenopsis invicta]
Length = 112
Score = 48.1 bits (113), Expect = 0.009, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA++++ V++A+ AKE
Sbjct: 54 NHVLLYTIMNPIYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVKFDTVKSAIRAKE 111
>gi|332027758|gb|EGI67825.1| Polypyrimidine tract-binding protein 1 [Acromyrmex echinatior]
Length = 225
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVA 109
AF+E D N A M++YYA+ AQ+RG+ VY+Q+SN +E+ ++T ++ A
Sbjct: 149 AFLEMGDENAAATMVNYYATGV--AQLRGRAVYVQFSNHRELKTDQTHSNNA 198
>gi|396499673|ref|XP_003845532.1| hypothetical protein LEMA_P008400.1 [Leptosphaeria maculans JN3]
gi|312222113|emb|CBY02053.1| hypothetical protein LEMA_P008400.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS +++RNLPW + E+LIEL GKV + G +R +EF AD AI
Sbjct: 386 PSNTIYVRNLPWSTSNEDLIELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKEADAETAI 445
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNR 96
+ + Y P + Y++Y+N+
Sbjct: 446 SKFTGYQYGGRPLGL----TYVKYTNQ 468
>gi|149050610|gb|EDM02783.1| heterogeneous nuclear ribonucleoprotein L-like (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 410
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320
+ +++++ + ++ + G + + + V A AK AL G IY G C L I Y
Sbjct: 51 MFYILYATLLEKYSVLLYSREMGYKQCLTFESVLCAQKAKAALNGADIY-AGCCTLKIEY 109
Query: 321 SRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQ 380
+R T L++ N++ S DYT P + + G+Q ++G + + + P
Sbjct: 110 ARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILGDHPSSFRHDGYGSHGPLL 166
Query: 381 PMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHM 426
P+ P+ G+ +P AS S G+ P GS+ M G+ Q+ M
Sbjct: 167 PL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGS----PSGSVVMVSGLHQLKM 215
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
+ +++++ + + + + G++ + F A AK AL+G I G C
Sbjct: 51 MFYILYATLLEKYSVLLYSREMGYKQCLTFESVLCAQKAKAALNGADI-------YAGCC 103
Query: 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
TL+I Y+ T L+V + S DYT PYL
Sbjct: 104 TLKIEYARPTRLNVIRNDNDSWDYTKPYL 132
>gi|167379859|ref|XP_001735309.1| polyadenylate-binding protein, cytoplasmic and nuclear [Entamoeba
dispar SAW760]
gi|165902764|gb|EDR28498.1| polyadenylate-binding protein, cytoplasmic and nuclear, putative
[Entamoeba dispar SAW760]
Length = 379
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S++L +RN+ + EE + +L + +G++ C + NR AF+ F D+ AI
Sbjct: 25 SRILFVRNISFNANEESIRKLFEKYGEIKKVFCQI-ENRGIAFVTFYDIRDAIKA----H 79
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
++ G+ + + YS ++ NKT + L V + G + ++ H F
Sbjct: 80 EELNKKEIDGRPIKIHYSLPKDNEINKTDSLENHANLYVILRGFQKIPTNDEIFHY-FEK 138
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSA 167
FG V +I + +++ D+ A A
Sbjct: 139 FGEVSEIRDSADKPNIK-FIEYYDSRAAVKA 168
>gi|149392187|gb|ABR25946.1| ab1 polypyrimidine tract-binding protein [Oryza sativa Indica
Group]
Length = 121
Score = 47.8 bits (112), Expect = 0.011, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
+R+ P+K++H+ LP E TE+ ++ G VVNTK + QA I+F +A
Sbjct: 36 YRHCCAPTKMIHISALPQEITEDAILNHVSEHGSVVNTKLFEVNGKRQALIQFESEEEAT 95
Query: 70 -AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +A+S E G T+ + +S Q I
Sbjct: 96 EALVSKHATSLE-----GNTIRISFSQMQSI 121
>gi|33359633|gb|AAQ17064.1| nucleolin 2 [Cyprinus carpio]
Length = 643
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 2 ASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQA 58
A Q + S+ L ++NLP+ T+EEL E+ F + V+ + N G++R A
Sbjct: 294 AKSKENSQDSKKERDSRTLFVKNLPYSVTQEELKEI---FDQAVDIRIPMGNSGSSRGIA 350
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIE 118
++EF ++AIA + ++ + V+G+++ + ++ + + TA A VL+V
Sbjct: 351 YLEFK--SEAIAEKAM--EEAQGSDVQGRSIIIDFTGEKSQKGGRATA-AANKVLVVN-- 403
Query: 119 GTDARLVSIDVLHLVF-SAFGFV-HKITTFEKTAGFQALVQFSDTETASSA-----KNAL 171
A + D L VF A ++ + + T + GF A ++F + E A A +
Sbjct: 404 -NLAFTANEDALQSVFEKAVSYLEYLLETNGRPKGF-AFLEFENVEDAKEALENCNNTEI 461
Query: 172 DGRSI 176
+GRSI
Sbjct: 462 EGRSI 466
>gi|125589639|gb|EAZ29989.1| hypothetical protein OsJ_14050 [Oryza sativa Japonica Group]
gi|218194466|gb|EEC76893.1| hypothetical protein OsI_15106 [Oryza sativa Indica Group]
Length = 201
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
VL + N+ Y VT D+LH VF A+G +KI ++ ++A +Q+ + A A++
Sbjct: 20 EQVLHVTASNLLYPVTKDLLHRVFYAYG-AKKICLYQMETRVEASVQFQSREDAEYARKT 78
Query: 303 LEGHCIYDGGFCKL 316
GH IY G C++
Sbjct: 79 FHGHNIYHGC-CQM 91
>gi|383854458|ref|XP_003702738.1| PREDICTED: polypyrimidine tract-binding protein 1-like [Megachile
rotundata]
Length = 196
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVN 46
PS+V+H+RN+P E +E E+I LG PFG+V N
Sbjct: 57 KPSRVIHIRNIPNEVSEGEIIHLGVPFGRVTN 88
>gi|189191918|ref|XP_001932298.1| RNP domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973904|gb|EDU41403.1| RNP domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 468
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS +++RNLPW + E+L+EL GKV + G +R +EF AD +I
Sbjct: 365 PSNTIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSI 424
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSN 95
A + Y P + Y++Y+N
Sbjct: 425 AKFTGYQYGGRPLGL----AYVKYTN 446
>gi|154422945|ref|XP_001584484.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121918731|gb|EAY23498.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 314
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
S FG VQKI F+K G AL+Q +V A + L Y F +L + YS++T++
Sbjct: 128 SHFGVVQKIICFEKKGKY-ALLQMENVDQAALVLANLSIPNRYAPSF-ELRVQYSKNTNI 185
Query: 327 SIKVNNDRSRDYTLP 341
I+ NN +S D+T+P
Sbjct: 186 VIQYNNSKSFDFTVP 200
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
S FG V KI FEK + AL+Q + + A+ L SIP P LR+ Y
Sbjct: 128 SHFGVVQKIICFEKKGKY-ALLQMENVDQAALV---LANLSIPNRYAPS----FELRVQY 179
Query: 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGK--KLEPES-NVLLASIE 251
S +T++ +++ + +S D+T P A+D L GL + EPES N + S +
Sbjct: 180 SKNTNIVIQYNNSKSFDFT------VPGALDEFELLREGLTNEVPYFEPESCNEIPRSFD 233
Query: 252 NMQ-------YAVTLDVLHM----------VFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
++ Y +L V + +F +G V K+ + K + +Q +
Sbjct: 234 FVRPVQFDPAYGNSLTVTGLPANQATFARNIFQQYGAVLKVKVMTKQNEVLTYVQMRNAF 293
Query: 295 TAVVAKEALEGHCIYDG 311
A +A + G +++G
Sbjct: 294 YARLAMTNINGM-VFNG 309
>gi|17508419|ref|NP_492508.1| Protein MEC-8 [Caenorhabditis elegans]
gi|1369981|emb|CAA64867.1| mec-8 [Caenorhabditis elegans]
gi|3877217|emb|CAB03111.1| Protein MEC-8 [Caenorhabditis elegans]
Length = 312
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ N+ V D L VF AF ++ + +KNG A ++Y D+Q A A +L+G I
Sbjct: 232 VANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQIT 291
Query: 310 DGGFCKLHISYSRH 323
L I Y+R+
Sbjct: 292 ANDRGGLRIEYARN 305
>gi|1370048|emb|CAA64866.1| mec-8 [Caenorhabditis elegans]
Length = 312
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ N+ V D L VF AF ++ + +KNG A ++Y D+Q A A +L+G I
Sbjct: 232 VANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMISLQGFQIT 291
Query: 310 DGGFCKLHISYSRH 323
L I Y+R+
Sbjct: 292 ANDRGGLRIEYARN 305
>gi|170097425|ref|XP_001879932.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645335|gb|EDR09583.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 261
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN-RNQAF--IEFADLNQAIAM 71
PP+K + + NLP+ +EEE+ E P+G + N + + G + R++ F IEF L+ A+A
Sbjct: 66 PPAKTVWIGNLPFFVSEEEVREKFSPYGPISNIRLSTGPDGRSKGFGHIEFESLDDAVAA 125
Query: 72 ISYYASSSEPAQVRGKTVYLQY 93
+ + EP + G+ + + Y
Sbjct: 126 VE--SGLEEPFHLAGRDLRVDY 145
>gi|330913095|ref|XP_003296184.1| hypothetical protein PTT_05285 [Pyrenophora teres f. teres 0-1]
gi|311331880|gb|EFQ95720.1| hypothetical protein PTT_05285 [Pyrenophora teres f. teres 0-1]
Length = 481
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS +++RNLPW + E+L+EL GKV + G +R +EF AD +I
Sbjct: 378 PSNTIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKAADAETSI 437
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSN 95
A + Y P + Y++Y+N
Sbjct: 438 AKFTGYQYGGRPLGL----AYVKYTN 459
>gi|118382059|ref|XP_001024189.1| hypothetical protein TTHERM_00456820 [Tetrahymena thermophila]
gi|89305956|gb|EAS03944.1| hypothetical protein TTHERM_00456820 [Tetrahymena thermophila
SB210]
Length = 842
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
SSS+ V V YS R+ + V VLLV + L++ D+++ +F
Sbjct: 5 SSSKFVYVESDIVTPDYSGRRSQKTTISDVSVKKRVLLVCVYNKKGTLITHDIIYRLFMK 64
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
+G ++KI F+K ++ V+ + E A A++ L+ Y L ++ T+ Y A
Sbjct: 65 YGEIYKILIFDKCKNWKIFVEMATLEQAEKARDGLNN-----YQLFDDGSKMTV---YYA 116
Query: 197 HTDLSVKFQSHRS 209
D V FQ++ S
Sbjct: 117 KVDQIV-FQNNNS 128
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 225 DASGQLSVGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGG 283
D SG+ S + + VLL + N + +T D+++ +F +G + KI +FDK
Sbjct: 20 DYSGRRSQKTTISDVSVKKRVLLVCVYNKKGTLITHDIIYRLFMKYGEIYKILIFDKCKN 79
Query: 284 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPST 343
+ ++ ++ A A++ L + ++D G K+ + Y++ + + NN DY
Sbjct: 80 WKIFVEMATLEQAEKARDGLNNYQLFDDG-SKMTVYYAKVDQIVFQNNNSGGVDYRELKQ 138
Query: 344 PMVN 347
VN
Sbjct: 139 RKVN 142
>gi|413956976|gb|AFW89625.1| hypothetical protein ZEAMMB73_282398 [Zea mays]
Length = 635
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPF-----GKVVNTK----CNVGANRNQAFIEFADLN 66
P + LH+ NLP TE++LI+ F K+ +K C + + QAF+EF
Sbjct: 132 PLRRLHIENLPDSATEDKLIDCLNDFLLSTGSKLQRSKPCLSCTINREKRQAFVEFLTPE 191
Query: 67 QAIAMISYYASSSEPA--QVRGKTVYLQYSN------RQEIVNNKTTADVAGNVLLVTIE 118
A A IS+ S + ++R Y++ N + + + AD + + I
Sbjct: 192 DATAAISFDGRSLNGSVLRIRRPKEYVETVNVTPKKAEETALISDVVADSPYKIFIAGIA 251
Query: 119 GTDARLVSIDVLHLVFSAFG--FVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
G ++S +L + SAFG ++ + G A ++++D S A L+G
Sbjct: 252 G----VISSKMLMEIVSAFGPLAAYRFLFNNELGGPCAFLEYADRSVTSKACAGLNG 304
>gi|328866397|gb|EGG14781.1| hypothetical protein DFA_10654 [Dictyostelium fasciculatum]
Length = 715
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMIS 73
+ P + L +RN+ + E+E++ + +G+ + K + NR +FI F D+ +A A
Sbjct: 225 EKPGRTLFVRNIAYNVKEDEIVAMFSKYGE-IRKKFSAIENRGISFITFYDIREAEAA-- 281
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLV 133
+ + ++G+++ + +S I N++ +LV + ++ L
Sbjct: 282 --KNDVQGIILQGRSIDVHFS----IPKNQSDESAFSGYILVK-----NNTIPMNELRTF 330
Query: 134 FSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
FS +G + +T ++ Q LV+F DT A G+ +
Sbjct: 331 FSTYGDLKDVTEYKNG---QLLVEFYDTRACDKAMKEAHGQEL 370
>gi|313235941|emb|CBY25084.1| unnamed protein product [Oikopleura dioica]
Length = 465
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVN---TKCNVGANRNQAFIEFADLNQAIAMI 72
+ LRNLP++ ++E+L EL KP+GK V K VG ++ AF+EFA ++A ++
Sbjct: 349 VFLRNLPFDASQEDLEELVKPYGKAVKVSIVKNEVGVSKGVAFVEFASKDEADRVV 404
>gi|156841306|ref|XP_001644027.1| hypothetical protein Kpol_1026p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114660|gb|EDO16169.1| hypothetical protein Kpol_1026p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 277
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE+L++L + G VVN K G ++ AF+E+ DL + +
Sbjct: 11 PPSRVVYLGSIPYDQTEEQLLDLCRNVGPVVNLKLMFDPQTGKSKGYAFVEYKDLETSAS 70
Query: 71 MI 72
+
Sbjct: 71 AV 72
>gi|47214762|emb|CAG01297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 898
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 29 CTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88
CTE ++I LG PFGKV N + + +QAF+E A + A AM+ YY + PA + +
Sbjct: 290 CTENDVINLGLPFGKVTNYI--LMRSTHQAFLEMAYVEAAQAMVQYYQLT--PAMINNQK 345
Query: 89 VYLQYSNR-QEIVNNKTTADV 108
+ ++ S R +E+ K DV
Sbjct: 346 LLIRMSKRYKELQLKKPGKDV 366
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 38/195 (19%)
Query: 1 MASVSSQPQFRYTQPP-----------SKVLHLRNLPWECTEEELIELGKPFGKVVNTK- 48
M+ V SQPQ + P S L++ +L TE +L +L G++V+ +
Sbjct: 1 MSQVQSQPQGPVSAPVGMASNGGNQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRV 60
Query: 49 CNVGANRNQAFIEFADLN------QAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
C +R + + N QA+ ++++ V GK + + YS R +
Sbjct: 61 CRDLTSRRSLGYGYVNYNNVHDAAQALEVLNF-------TPVNGKPIRIMYSYRDPTIRK 113
Query: 103 KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL----VQF 158
AGN+ + ++ + + LH FSAFG + +AG Q+L VQF
Sbjct: 114 SG----AGNIYIKNLD----KAIDNKALHDTFSAFGNILSCKVATDSAG-QSLGYGFVQF 164
Query: 159 SDTETASSAKNALDG 173
+ E+A +A + L+G
Sbjct: 165 DNEESAKNAIDKLNG 179
>gi|357114131|ref|XP_003558854.1| PREDICTED: uncharacterized protein LOC100840355 [Brachypodium
distachyon]
Length = 840
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 19/176 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIE------LGKPFGKVVNTK-----CNVGANRNQAFIEFAD 64
P + LH+ NLP +E+ LI L + +K C + ++QAF+EF
Sbjct: 335 PLRRLHIENLPSSASEDMLIGCLNDFFLSSDVNHIQKSKQPCLSCTINKEKHQAFVEFLT 394
Query: 65 LNQAIAMISYYASS--SEPAQVRGKTVYLQYSN---RQEIVNNKTTADVAGNVLLVTIEG 119
A A +S+ S ++R Y++ +N ++ + K +DVA + + + G
Sbjct: 395 PEDATAALSFDGRSFNGSALKIRRPKEYIEMANVVPKKTVEEIKLASDVADSPHKIFVAG 454
Query: 120 TDARLVSIDVLHLVFSAFG--FVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
++S ++L + S+FG ++ E +G A +++ D A L+G
Sbjct: 455 ISG-VISSEMLMEIVSSFGQLAAYRFQDHEALSGRCAFLEYIDHSITDKACAGLNG 509
>gi|301615885|ref|XP_002937390.1| PREDICTED: nucleolin [Xenopus (Silurana) tropicalis]
Length = 705
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L ++N+P+ T EEL E+ + + GAN+ A++EF++ +A +
Sbjct: 383 SRTLFVKNIPYSTTAEELQEIFENAKDIRIPTGKDGANKGIAYVEFSNETEATKAL---- 438
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ A++ G+++++ ++ E N + V G V + + + D L VF
Sbjct: 439 EEKQGAEIEGRSIFVDFTG--EKSQNSGSRRVQGGDSKVLVVNNLSYSATEDSLREVFEK 496
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNA-----LDGRSI 176
+ + GF A ++FS E A A ++ ++GRSI
Sbjct: 497 ATSIRIPQNQGRAKGF-AFIEFSSVEDAKEAMDSCNNTEIEGRSI 540
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 22 LRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ---AFIEFADLNQAIAMISYYASS 78
++ LP E + EL L PFGKV++ K V A N F+ F+ +++ I +
Sbjct: 73 VKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKKAI----DN 128
Query: 79 SEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG 138
+ Q+ K + + SN NNK ++ N+ L + T +S D L +FS FG
Sbjct: 129 MDGFQLMHKKLLCRLSNLYSNCNNKYPSN---NLFLKPLPAT----LSDDQLKELFSPFG 181
Query: 139 FVHKITTF------EKTAGFQALVQFSDTETASSAKNALDGRSI 176
+ + K AGF V+F + A+ A A++G +
Sbjct: 182 EILECKVMIDQNGNSKLAGF---VRFCNEADATKAMQAMNGTKM 222
>gi|37806432|dbj|BAC99625.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125603374|gb|EAZ42699.1| hypothetical protein OsJ_27267 [Oryza sativa Japonica Group]
Length = 401
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 218 PVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 277
P A S++D S ++ + K ++VL ++ ++ Y VT +VL VFS +G +++ +
Sbjct: 58 PGATSSVD-SQKVFDEMPSNKEPTTASVLHVTMSHVLYPVTAEVLLQVFSPYG-AEEVRV 115
Query: 278 FDKNG-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320
+++ ++A I + Q A A+EAL G CIY+G C L + Y
Sbjct: 116 YNQGTIQVEAFILFRLCQDATRAREALHGCCIYNGC-CFLDVKY 158
>gi|268564730|ref|XP_002639203.1| C. briggsae CBR-MEC-8 protein [Caenorhabditis briggsae]
Length = 305
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ N+ V D L VF AF ++ + +KNG A ++Y D+Q A A AL+G +
Sbjct: 225 VANLSAEVNEDQLRGVFKAFTGFTRLRLHNKNGSCVAFVEYSDLQKATQAMLALQGFQVS 284
Query: 310 DGGFCKLHISYSRH 323
L I Y+R+
Sbjct: 285 ANDRGGLRIEYARN 298
>gi|380011401|ref|XP_003689795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like [Apis
florea]
Length = 100
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA+++YP
Sbjct: 43 NHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEYP 90
>gi|169855509|ref|XP_001834421.1| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
gi|116504503|gb|EAU87398.1| rRNA primary transcript binding protein [Coprinopsis cinerea
okayama7#130]
Length = 807
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVN----TKCNVGANRNQAFIEFADLNQAIAMISYY 75
L +RNL + CTEEEL+EL PFG VV T + A+I F+ A+A +Y
Sbjct: 254 LFVRNLTFSCTEEELLELFSPFGNVVKAHIPTDATTKQGKGMAYITFSSPESAVA--AYK 311
Query: 76 ASSSEPAQVR 85
+ +P Q R
Sbjct: 312 SLDKKPFQGR 321
>gi|198417513|ref|XP_002121186.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein L
[Ciona intestinalis]
Length = 106
Score = 46.2 bits (108), Expect = 0.037, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
+ VLL ++ N Y +T DVLHM+ G VQ+I +F K G+QA+I+YP
Sbjct: 52 NKVLLFTVVNAVYPITTDVLHMICEPCGEVQRIVIFRKR-GVQAMIEYP 99
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 26/199 (13%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC--NVGANRNQAFIEFADLNQAIAMISYYAS 77
L+++NL T L + PFG +++ K G ++ F++F A+ S
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVEENGQSKGFGFVQFETEQSAVTA----RS 167
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD-ARLVSIDVLHLVFSA 136
+ + V GK +++ + +N +AGN + + ++ D+LH +FS
Sbjct: 168 ALHGSMVDGKKLFVA-----KFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQ 222
Query: 137 FGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
+G V + ++ GF V F E A A ++L GR + G TL +
Sbjct: 223 YGTVSSVVVMRDGMGRSRGF-GFVNFCHPENAKKAVDSLHGRQV---------GSKTLFV 272
Query: 193 TYSAHTDLSVKFQSHRSRD 211
+ D + H+ RD
Sbjct: 273 GKALKRDERREMLKHKYRD 291
>gi|365760727|gb|EHN02425.1| Rna15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 313
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>gi|123500629|ref|XP_001327903.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910839|gb|EAY15680.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 432
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326
S FG V+KI F+K G AL+Q V+ A + L Y F +L + YS++ ++
Sbjct: 128 SHFGIVEKIICFEKQGKF-ALVQMQTVEQAALVLANLTIPNRYAPSF-ELRVQYSKNANI 185
Query: 327 SIKVNNDRSRDYTLP 341
I+ NN +S D+TLP
Sbjct: 186 VIQFNNSKSFDFTLP 200
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 135 SAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194
S FG V KI FEK F ALVQ +T A L +IP P LR+ Y
Sbjct: 128 SHFGIVEKIICFEKQGKF-ALVQM---QTVEQAALVLANLTIPNRYAPS----FELRVQY 179
Query: 195 SAHTDLSVKFQSHRSRDYTNP 215
S + ++ ++F + +S D+T P
Sbjct: 180 SKNANIVIQFNNSKSFDFTLP 200
>gi|401625777|gb|EJS43770.1| rna15p [Saccharomyces arboricola H-6]
Length = 314
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>gi|256092948|ref|XP_002582139.1| rna binding motif protein [Schistosoma mansoni]
gi|353228818|emb|CCD74989.1| putative rna binding motif protein [Schistosoma mansoni]
Length = 692
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNT---KCNVGANRNQAFIEFADLNQAIAMIS 73
+K+L +RN+P++ T++ELIEL +P G +VN K +R AF+EF L++A +
Sbjct: 613 NKILIVRNIPFQATQKELIELFQPIGGLVNVRLPKKPTSGHRGFAFVEFDTLDKAKIALE 672
Query: 74 YYASSSEPAQVRGKTVYLQYS 94
S+ + G+ + ++Y+
Sbjct: 673 TLGVST---HLLGRRLLMEYA 690
>gi|118368089|ref|XP_001017254.1| hypothetical protein TTHERM_00196000 [Tetrahymena thermophila]
gi|89299021|gb|EAR97009.1| hypothetical protein TTHERM_00196000 [Tetrahymena thermophila SB210]
Length = 1455
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 256 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315
VTL +L +FS FGP++KI M+ KN L++Y +++A AKE+L D +
Sbjct: 1240 KVTLKMLINIFSYFGPIEKI-MYLKNKS-SCLVEYTRIESASAAKESLNDMTFMDQ---E 1294
Query: 316 LHISYSRHTDLSIK 329
+ I YS + + IK
Sbjct: 1295 IKIFYSNYDQIYIK 1308
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 37/173 (21%)
Query: 101 NNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKIT---------------T 145
NNK T V LLV + T+ R ++ + H VFSA+G V ++
Sbjct: 366 NNKCTTGV----LLVVVNNTENRTINQETYHKVFSAYGEVWRVNIFIENNYDKHLIQLLI 421
Query: 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ 205
FE+T +A V+ E A + +AL+ + LLP R+ A + FQ
Sbjct: 422 FERTPKCKAFVEMDSIENAQKSLDALNNQE----LLP------GFRMNIYAAILKKIVFQ 471
Query: 206 SHR--SRDYTNPYLPVAPSAIDASGQLSV-GLDGK-----KLEPESNVLLASI 250
+ DYT + ++ + Q S+ GL+GK +LE +N ASI
Sbjct: 472 ENNPGGFDYTVMRQIMMGNSQSSDKQSSISGLEGKPTSSHRLENSTNSQEASI 524
>gi|218201133|gb|EEC83560.1| hypothetical protein OsI_29204 [Oryza sativa Indica Group]
Length = 260
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-GLQALIQYPDVQTAVVAKE 301
++VL ++ ++ Y VT +VL VFS +G +++ ++++ ++A I + Q A A+E
Sbjct: 82 ASVLHVTMSHVLYPVTAEVLLQVFSPYG-AEEVRVYNQGTIQVEAFILFRLCQDATRARE 140
Query: 302 ALEGHCIYDGGFCKLHISY 320
AL G CIY+G C L + Y
Sbjct: 141 ALHGCCIYNGC-CFLDVKY 158
>gi|383856701|ref|XP_003703846.1| PREDICTED: uncharacterized protein LOC100878109 [Megachile
rotundata]
Length = 141
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTA 296
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA+++YP TA
Sbjct: 43 NHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEYPLQCTA 95
>gi|70953578|ref|XP_745881.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526340|emb|CAH77570.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 535
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN 54
+A+ + R+ P ++L ++N+P E TE EL+EL KPFG + N V N
Sbjct: 13 LATNKKEFDHRFDDKPLRILCVKNIPKETTENELLELFKPFGSIENINLKVNKN 66
>gi|169599889|ref|XP_001793367.1| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
gi|160705342|gb|EAT89501.2| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
Length = 328
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEF---ADLNQAI 69
PS +++RNLPW + E+L+EL GKV + G +R +EF D AI
Sbjct: 225 PSSTIYVRNLPWSTSNEDLVELFTTIGKVERAEIQYEPNGRSRGTGVVEFEKQEDAETAI 284
Query: 70 AMISYYASSSEPAQVRGKTVYLQYSNR 96
A + Y P ++ +++Y+N+
Sbjct: 285 AKFTGYQYGGRPLGLQ----FVKYTNQ 307
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 127/333 (38%), Gaps = 76/333 (22%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTK-CN---VGANRNQAFIEFADLNQAIAMISYY 75
+++ NL TE++L++L VV+ + C+ G + A++ F A + Y+
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ V GK++ + +SNR + A N+ + +E + LH +FS
Sbjct: 93 NFTV----VNGKSIRVMFSNRDPTLRRSG----AANLFIKNLEPN----IVAKSLHQMFS 140
Query: 136 AFGFV--HKITT--FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191
FG + K+ T K+ G+ VQF E+A A NAL+G+ L G
Sbjct: 141 RFGIILSCKVATDLNGKSKGY-GFVQFVSEESAKDAMNALNGK------LANGNGK---- 189
Query: 192 ITYSAHTDLSVKFQSHR----SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
+ DL ++ + + + +TN Y
Sbjct: 190 ---QLYVDLFIRREERQHIGGASKFTNVY------------------------------- 215
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDKNGGLQA--LIQYPDVQTAVVAKEALE 304
+N+ T D L VF+ FG + + M D +G + + Y + A A E L
Sbjct: 216 --TKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLN 273
Query: 305 GHCIYDGGFC--KLHISYSRHTDLSIKVNNDRS 335
G I D + R +L K + +R+
Sbjct: 274 GKIISDVALYVGRAKRKQERQAELKEKFDKERN 306
>gi|145503200|ref|XP_001437577.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404728|emb|CAK70180.1| unnamed protein product [Paramecium tetraurelia]
Length = 601
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 243 SNVLLASIENMQYAVTL--DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
+NV+L I N + TL D VFS FG +Q++ +F+++ + I++ + ++A+ A+
Sbjct: 6 TNVILVVITN-KANKTLGHDKYFKVFSQFGTIQRMLIFERSLTWKTFIEFDNPESAIKAR 64
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
+++ D +++ S+ T ++ + NN DYTL
Sbjct: 65 QSMNDKLFCDDAQLTMNVYASKLTYITFQENNTGGVDYTL 104
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NV+LV I + + D VFS FG + ++ FE++ ++ ++F + E+A A+ +
Sbjct: 7 NVILVVITNKANKTLGHDKYFKVFSQFGTIQRMLIFERSLTWKTFIEFDNPESAIKARQS 66
Query: 171 LDGR 174
++ +
Sbjct: 67 MNDK 70
>gi|302830338|ref|XP_002946735.1| hypothetical protein VOLCADRAFT_120369 [Volvox carteri f.
nagariensis]
gi|300267779|gb|EFJ51961.1| hypothetical protein VOLCADRAFT_120369 [Volvox carteri f.
nagariensis]
Length = 683
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAM 71
PS ++H+RN+P + E E+ +L + F +++ + GA+R AF+EFA +A A
Sbjct: 222 PSNLVHVRNIPEDRDESEVRQLFEGFSGLLSVRLVRSRTSGASRGNAFVEFA--TEADAA 279
Query: 72 ISYYASSSEPAQVRGKTVYLQYSN 95
+ + Q+ G T++L+Y++
Sbjct: 280 VLMETKARHGLQLGGNTLWLEYAH 303
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-GANRNQ--AFIEFADLNQAIAMI 72
P L +N+PW+CT +E+ L + G VV + ++ AN+N+ AF+ +A+A +
Sbjct: 69 PKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAAL 128
Query: 73 SYYASSSEPAQVRGKTVYLQYSN-RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLH 131
++ S+ + + + + ++ R++ A +V + R+ + +
Sbjct: 129 THLNSTI----LNDRKIKVDFARPRKKQPKQPAVVSDATEKYVVFVGNLTWRVRNRHLRE 184
Query: 132 LVFSAFGFVHK-----ITTFEKTAGFQALVQFSDTETASSAKNALDGR 174
L SA G V TT ++AG+ A V FS E+A +A +A +G+
Sbjct: 185 LFASAPGVVSAEVIFHTTTPRRSAGY-AFVSFSSKESAGAAISAFNGK 231
>gi|349578178|dbj|GAA23344.1| K7_Rna15p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 296
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>gi|151943247|gb|EDN61560.1| cleavage and polyadenylation factor CF I component involved in
pre-mRNA 3'-end processing [Saccharomyces cerevisiae
YJM789]
gi|190407008|gb|EDV10275.1| mRNA 3'-end processing protein RNA15 [Saccharomyces cerevisiae
RM11-1a]
gi|259146458|emb|CAY79715.1| Rna15p [Saccharomyces cerevisiae EC1118]
Length = 295
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>gi|6321394|ref|NP_011471.1| Rna15p [Saccharomyces cerevisiae S288c]
gi|133144|sp|P25299.1|RNA15_YEAST RecName: Full=mRNA 3'-end-processing protein RNA15
gi|172434|gb|AAA34984.1| RNA15 [Saccharomyces cerevisiae]
gi|1322531|emb|CAA96746.1| RNA15 [Saccharomyces cerevisiae]
gi|256271334|gb|EEU06400.1| Rna15p [Saccharomyces cerevisiae JAY291]
gi|285812156|tpg|DAA08056.1| TPA: Rna15p [Saccharomyces cerevisiae S288c]
gi|392299215|gb|EIW10309.1| Rna15p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 296
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>gi|207345307|gb|EDZ72171.1| YGL044Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 306
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 26 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 85
Query: 71 MI 72
+
Sbjct: 86 AV 87
>gi|413945518|gb|AFW78167.1| hypothetical protein ZEAMMB73_011466 [Zea mays]
Length = 213
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQA 68
+R+ P+K++H+ LP E +EE ++ G VVNTK + QA + F A
Sbjct: 127 NYRHCCSPTKMIHISALPQEISEEAILNHLSEHGTVVNTKLFEVNGKRQALVLFETEEAA 186
Query: 69 I-AMISYYASSSEPAQVRGKTVYLQYSNRQEI 99
A++S +AS+ E G T+ + +S Q I
Sbjct: 187 TEALVSKHASTLE-----GNTIRISFSQMQSI 213
>gi|149617177|ref|XP_001520054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L-like, partial
[Ornithorhynchus anatinus]
Length = 203
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG T C V + QA +EF +++ A +++
Sbjct: 69 SPVVHVRGLCESVVEADLVEALEKFG----TICYVMMMPFKRQALVEFENIDSAKECVTF 124
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIE 118
A EP + G+ + YS + I T D +G VLL++I+
Sbjct: 125 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQ 168
>gi|301598361|pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition
In The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 45.4 bits (106), Expect = 0.063, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 2 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 61
Query: 71 MI 72
+
Sbjct: 62 AV 63
>gi|341895190|gb|EGT51125.1| CBN-MEC-8 protein [Caenorhabditis brenneri]
gi|341898355|gb|EGT54290.1| hypothetical protein CAEBREN_29517 [Caenorhabditis brenneri]
Length = 313
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ N+ V D L VF AF ++ + +KNG A ++Y D+Q A A +L+G +
Sbjct: 233 VANLSAEVNEDQLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDLQKATQAMMSLQGFQVS 292
Query: 310 DGGFCKLHISYSRH 323
L I Y+R+
Sbjct: 293 ANDRGGLRIEYARN 306
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 38/195 (19%)
Query: 1 MASVSSQPQFRYTQPPSKV-----------LHLRNLPWECTEEELIELGKPFGKVVNTK- 48
MA V QPQ + P V L++ +L TE +L +L G+VV+ +
Sbjct: 1 MAQVQVQPQAPVSAPNGVVSNGVNQFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRV 60
Query: 49 CNVGANRNQAFIEFADLN------QAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNN 102
C +R + + N QAI ++++ V GK + + YS R +
Sbjct: 61 CRDLTSRRSLGYGYVNYNNVHDAAQAIEVLNF-------TPVNGKPIRIMYSYRDPTIRK 113
Query: 103 KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFV--HKITT--FEKTAGFQALVQF 158
T GN+ + ++ + + LH FSAFG + K+ T ++ G+ VQF
Sbjct: 114 SGT----GNIYIKNLD----KAIDNKALHDTFSAFGSILSCKVATDSLGQSLGY-GFVQF 164
Query: 159 SDTETASSAKNALDG 173
+ E+A +A + L+G
Sbjct: 165 DNEESAKNAIDKLNG 179
>gi|294931323|ref|XP_002779833.1| neural polypyrimidine tract binding protein, putative [Perkinsus
marinus ATCC 50983]
gi|239889519|gb|EER11628.1| neural polypyrimidine tract binding protein, putative [Perkinsus
marinus ATCC 50983]
Length = 210
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 142 KITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHTDL 200
++ F + ALV+ E A K LDG++I C TLRI YS+ L
Sbjct: 17 RVIVFHRGTVMHALVETKSQEIADQVKRELDGQNI--------FTQCNTLRIRYSSFRQL 68
Query: 201 SVKFQSHRSRDYTNPYLP 218
V + + RS D+TN LP
Sbjct: 69 HVNYNNERSWDFTNAGLP 86
>gi|33359635|gb|AAQ17065.1| nucleolin 3 [Cyprinus carpio]
gi|33949944|gb|AAQ55855.1| nucleolin [Cyprinus carpio]
Length = 637
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 2 ASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
A Q + S+ L ++NLP+ T+EEL E+ + +T + G++R A++E
Sbjct: 294 AKSKENSQDSKKERDSRTLFVKNLPYSVTQEELKEIFDQAVDIPDTDGHSGSSRGIAYLE 353
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTD 121
F ++ A+ ++ + V+G+++ + ++ + + TA A VL+V
Sbjct: 354 F----KSEAIAEKAMEEAQGSDVQGRSIIIDFTGEKSQKGGRATA-AANKVLVVN---NL 405
Query: 122 ARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSA-----KNALDGRSI 176
A + D L VF + + GF A ++F + E A A ++GRSI
Sbjct: 406 AFTANEDALQSVFEKAVSIRIPQNNGRPKGF-AFLEFENVEDAKEALENCNNTEIEGRSI 464
>gi|328792474|ref|XP_003251729.1| PREDICTED: hypothetical protein LOC100577881 [Apis mellifera]
Length = 120
Score = 44.7 bits (104), Expect = 0.098, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP 291
++VLL +I N Y +T++VLH + + G VQ+I +F KN G+QA+++YP
Sbjct: 43 NHVLLFTIINPVYPITVEVLHTISAPSGQVQRIVIFKKN-GVQAMVEYP 90
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 19/171 (11%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANR---NQAFIEFADLNQAIAMISY 74
KVL++ LP E+ L E G V + K N+ N AF+EF D A A +
Sbjct: 44 KVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDKNKQGFNYAFVEFVDEAGAAAALQE 103
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVF 134
+ SS + + Y+ + N +D + V G + V + LH F
Sbjct: 104 FNGSS----FENSMLKINYAYQSSTFNATQNSDDPTYNIFV---GDLSPEVDDESLHKFF 156
Query: 135 SAFGFVHKI-------TTFEKTAGFQALVQFSDTETASSAKNA--LDGRSI 176
SAF + + T+ + GF +D ETA S N L+GR+I
Sbjct: 157 SAFESLKQAHVMWDMQTSRSRGYGFVTFANLADAETALSTMNGKVLNGRAI 207
>gi|242037001|ref|XP_002465895.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
gi|241919749|gb|EER92893.1| hypothetical protein SORBIDRAFT_01g047730 [Sorghum bicolor]
Length = 969
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 24/178 (13%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTK---------CNVGANRNQAFIEFADLN 66
P + LH+ NLP TE++LI+ F K C + + QAF+EF
Sbjct: 471 PLRRLHIENLPDSATEDKLIDCLNDFLLPTGIKPQRSKPCLSCTINREKRQAFVEFLTPE 530
Query: 67 QAIAMISYYASS--SEPAQVRGKTVYLQYSN-------RQEIVNNKTTADVAGNVLLVTI 117
A A +S+ S ++R Y++ N + + + AD + + I
Sbjct: 531 DATAALSFDGRSLNGSTLRIRRPKEYVETVNVTPKKPAEETALISDVVADSPHKIFIAGI 590
Query: 118 EGTDARLVSIDVLHLVFSAFG--FVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173
G ++S ++L + SAFG ++ + G A ++++D S A L+G
Sbjct: 591 AG----VISSEMLMEIVSAFGPLAAYRFLFNSELGGPCAFLEYADRSITSKACAGLNG 644
>gi|366987515|ref|XP_003673524.1| hypothetical protein NCAS_0A05830 [Naumovozyma castellii CBS 4309]
gi|342299387|emb|CCC67141.1| hypothetical protein NCAS_0A05830 [Naumovozyma castellii CBS 4309]
Length = 314
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAM 71
PS++++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 42 PSRIVYLGSIPYDQTEEQILDLCNNVGPVINLKMMFDPQTGKSKGYAFIEFKDLETSASA 101
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNV 112
I Q+ + + YS+ NN +A +GNV
Sbjct: 102 IRNLNG----YQLGSRFLKCGYSS-----NNDISASSSGNV 133
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-GANRNQ--AFIEFADLNQAIAMI 72
P L +N+PW+CT +E+ L + G VV + ++ AN+N+ AF+ +A+A +
Sbjct: 69 PKTRLVAQNIPWDCTADEMRALFESHGSVVGVELSMYSANKNRGLAFVTMGSEEEALAAL 128
Query: 73 SYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNV--LLVTIEGTDARLVSIDVL 130
++ S+ + + + + ++ R K A V+ + +V + R+ + +
Sbjct: 129 THLNSTI----LNDRKIKVDFA-RPRKKQPKQPAVVSDDTEKYVVFVGNLTWRVRNRHLR 183
Query: 131 HLVFSAFGFVHK-----ITTFEKTAGFQALVQFSDTETASSAKNALDGR 174
L SA G V TT ++AG+ A V FS E+A +A +A +G+
Sbjct: 184 ELFASAPGVVSAEVIFHTTTPRRSAGY-AFVSFSSKESAGAAISAFNGK 231
>gi|82595873|ref|XP_726028.1| erythrocyte membrane protein [Plasmodium yoelii yoelii 17XNL]
gi|23481263|gb|EAA17593.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 568
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN 54
R+ P ++L ++N+P E TE EL+EL KPFG + N V N
Sbjct: 23 RFDDKPLRILCVKNIPKETTENELLELFKPFGSIENINLKVNKN 66
>gi|167522112|ref|XP_001745394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776352|gb|EDQ89972.1| predicted protein [Monosiga brevicollis MX1]
Length = 459
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
P S VL +I N + TL+ LH + +G V +I K+G +Q L +Y A VA
Sbjct: 154 PPSRVLSINICNCPFDPTLEFLHAQMARYGQVLRIVTIRKDGDMQVLAEYAQQSEATVAL 213
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340
AL+ LSI+ N +RD+T+
Sbjct: 214 NALQNET------------------LSIRNNTSSARDFTV 235
>gi|367006043|ref|XP_003687753.1| hypothetical protein TPHA_0K01870 [Tetrapisispora phaffii CBS 4417]
gi|357526058|emb|CCE65319.1| hypothetical protein TPHA_0K01870 [Tetrapisispora phaffii CBS 4417]
Length = 289
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 16/112 (14%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQA 68
PPS+V+++ ++P++ TEE++++L G VVN K G ++ AF+E+ DL +
Sbjct: 11 NNPPSRVIYIGSIPYDQTEEQILDLCSNVGPVVNLKMMFDPQTGRSKGYAFVEYKDLETS 70
Query: 69 IAMISYYASSSEPAQVRGKTVYLQYSNRQEIV--------NNKTTADVAGNV 112
+ + QV + + YS+ +I +N D+ GN+
Sbjct: 71 ASAVRNLNG----YQVGSRLLKCGYSSNSDISGSAGNDNNDNSNIHDINGNL 118
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD 64
PP+K+L ++NLP + T+E L L +PF +V + + +N AF+EFAD
Sbjct: 209 PPNKILFVQNLPDDTTKEGLEALFRPFPNLVEVRT-IPGRKNIAFVEFAD 257
>gi|328792476|ref|XP_003251730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein L [Apis
mellifera]
Length = 394
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
+I + V++A AKE L G IY G C L I +++ T L++ N+ S DYT P+
Sbjct: 1 MITFDSVESATRAKETLHGADIYSG-CCTLKIDFAKPTKLNVYKNDAESWDYTTPT 55
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
++ F E+A+ AK L G I G CTL+I ++ T L+V S DYT
Sbjct: 1 MITFDSVESATRAKETLHGADI-------YSGCCTLKIDFAKPTKLNVYKNDAESWDYTT 53
Query: 215 PYLPVAPSAIDASGQ 229
P L + DA+G
Sbjct: 54 PTLGSSAHKNDATGN 68
>gi|71409156|ref|XP_806939.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70870824|gb|EAN85088.1| RNA-binding protein, putative, partial [Trypanosoma cruzi]
Length = 165
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+V+H+RN+ T+ + L + FG + + NQA +E A ++ ++
Sbjct: 76 SRVIHMRNITPNVTQLSIQNLVQNFGNI--KHIVMLRQMNQALVEMESTKSAQQLVDFFR 133
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV 108
+ A++ G+ VY++YSN QE+ + T+
Sbjct: 134 QTGY-AEIDGRRVYIRYSNHQELTATQHTSKT 164
>gi|365986010|ref|XP_003669837.1| hypothetical protein NDAI_0D02800 [Naumovozyma dairenensis CBS 421]
gi|343768606|emb|CCD24594.1| hypothetical protein NDAI_0D02800 [Naumovozyma dairenensis CBS 421]
Length = 315
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQ 67
Y QP S++++L ++P++ TEE++++L G VVN K G ++ AFIEF DL
Sbjct: 42 YNQP-SRIVYLGSIPYDQTEEQILDLCNNVGPVVNLKMMFDQQTGRSKGYAFIEFKDLET 100
Query: 68 AIAMI 72
+ + I
Sbjct: 101 SASAI 105
>gi|348512352|ref|XP_003443707.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oreochromis niloticus]
Length = 422
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPATTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|358418058|ref|XP_003583827.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078076|ref|XP_003587651.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Bos taurus]
Length = 421
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|358418060|ref|XP_001252034.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Bos taurus]
gi|359078079|ref|XP_002696917.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Bos taurus]
Length = 436
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|395508625|ref|XP_003758610.1| PREDICTED: zinc finger protein 638 [Sarcophilus harrisii]
Length = 2020
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 19 VLHLRNLPWEC-TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
++H+ LP + TE+++I++ +PFGKV + + +RN+A++E +A+A Y
Sbjct: 676 IIHVSELPTDGYTEQDIIKIVQPFGKVSD--LLIVPSRNEAYLEMK-FKEAVAAAVKYCE 732
Query: 78 SSEPAQVRGKTVYLQYSNRQEI---VNNK 103
++ P QV+GK V + + ++++ V NK
Sbjct: 733 TT-PVQVKGKRVKISAAGKKKLPSTVQNK 760
>gi|426249020|ref|XP_004018250.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Ovis aries]
Length = 421
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|358418056|ref|XP_003583826.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078072|ref|XP_003587650.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Bos taurus]
Length = 433
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|73989917|ref|XP_862067.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 8 [Canis lupus familiaris]
Length = 420
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|410336417|gb|JAA37155.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 421
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|426249014|ref|XP_004018247.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Ovis aries]
Length = 420
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|345322963|ref|XP_001507956.2| PREDICTED: zinc finger protein 638 [Ornithorhynchus anatinus]
Length = 1964
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 14/173 (8%)
Query: 19 VLHLRNLPWEC-TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
V+H+ +LP + TE+++ +L +PFGKV + + +RN+A++E A + + S
Sbjct: 679 VIHISDLPDDGYTEQDIKKLVQPFGKVSD--LLIIPSRNEAYLEMHFKEAVTAAVKF--S 734
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAF 137
+EP V+G+ V + + R+ ++ + +V +V + + SI+ + + F
Sbjct: 735 ETEPVLVKGRRVKMWAAGRKTLLALPAQREPE-DVCVVAVSNLPEKGYSIEEVSNLAKPF 793
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAK------NALDGRSIPRYLLPEN 184
G + + T +A ++ S S K ++DG + L PEN
Sbjct: 794 GGLKDVLIM--TTHKKAYMEISRKSADSMVKFYTCFPMSVDGSQLSVSLAPEN 844
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 34/223 (15%)
Query: 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFI 60
V S +F Y P L ++NL E T++EL + K FG + + K G++R AFI
Sbjct: 159 VHSVSKFDYN--PKANLLVKNLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFI 216
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTI-EG 119
+F +A + ++ A+++GK + + ++ N N+ + + +G
Sbjct: 217 QFQSEEEAEKAL----NAMNQAEIKGKKIEINRHEKKATRENPQQTKF-NNLFVKNLPKG 271
Query: 120 TDARLVSIDVLHLVFSAFGFVHKITTFEKTAGF---QALVQFSDTETASSAKNALDGRSI 176
TD D L +F FG + +T G V F + + A +A ++ + I
Sbjct: 272 TDD-----DQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNKKQI 326
Query: 177 PRYLLPEN---------------MGPCTLRITYSAHTDLSVKF 204
L N + P T + + ++++ +KF
Sbjct: 327 DDQFLIVNQHISKKDNEPTQGSRLNPITQNLNKTFNSNIYIKF 369
>gi|3746338|gb|AAC63910.1| RNA-binding protein [Homo sapiens]
Length = 411
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 54 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 100
>gi|344288051|ref|XP_003415764.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Loxodonta africana]
Length = 420
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|123449065|ref|XP_001313255.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895132|gb|EAY00326.1| hypothetical protein TVAG_307720 [Trichomonas vaginalis G3]
Length = 274
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASS 78
++H+ NLP T++ L + G V+N AN N AFI+F + AI ++ Y +
Sbjct: 8 LIHVSNLPPNATDDFLRSFFQDCGNVLNVSSKHRANGNFAFIQFDNKESAIRAVANYNYT 67
Query: 79 SEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG 138
++ G+ + + Y++ + + + GN + I+G D + LH +FS FG
Sbjct: 68 ----KLNGEPIIITYASIEYM---RIIHSGLGN---ICIKGLDEN-IEASQLHELFSNFG 116
Query: 139 FVHKITT---FEKTAGFQALVQFSDTETASSAKNALDGRSI 176
V + K GF A +QF + A A+ L +I
Sbjct: 117 EVISCKVPMQYGKNRGF-AYIQFKNPMDADRARQELADATI 156
>gi|358418062|ref|XP_003583828.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Bos taurus]
gi|359078082|ref|XP_003587652.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Bos taurus]
Length = 418
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 108
>gi|115529305|ref|NP_001070184.1| RNA-binding motif, single-stranded-interacting protein 3 [Danio
rerio]
gi|115313355|gb|AAI24430.1| RNA binding motif, single stranded interacting protein [Danio
rerio]
Length = 381
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 24 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 70
>gi|42571201|ref|NP_973674.1| MEI2-like 2 protein [Arabidopsis thaliana]
gi|145331103|ref|NP_001078043.1| MEI2-like 2 protein [Arabidopsis thaliana]
gi|330255089|gb|AEC10183.1| MEI2-like 2 protein [Arabidopsis thaliana]
gi|330255090|gb|AEC10184.1| MEI2-like 2 protein [Arabidopsis thaliana]
Length = 830
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKV--VNTKCNVGANRNQAFIEFADLNQAIAMIS 73
PS+ L +RN+ + EL L +PFG++ + T C +R I + D+ A A +
Sbjct: 183 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC---KSRGFVMISYYDIRAAHAAMR 239
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV-AGNVLLVTIEGTDARLVSIDVLHL 132
++ +R +T+ + +S +E N + D+ G +++ ++ T VS D L
Sbjct: 240 ALQNT----LLRKRTLDIHFSIPKE---NPSEKDMNQGTLVIFNVDTT----VSNDELLQ 288
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
+F A+G + +I F +++ D A +A AL+ I
Sbjct: 289 LFGAYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEI 331
>gi|426249016|ref|XP_004018248.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Ovis aries]
Length = 436
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|410336415|gb|JAA37154.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 437
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|393243611|gb|EJD51125.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 526
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ--AFIEFADLNQ-- 67
Y PPS+ + + NLPW E+L+EL + G V + R++ ++FAD+ +
Sbjct: 421 YDVPPSQQIMVGNLPWSTANEDLVELFETTGTVQEAEVLFEGQRSKGAGVVQFADVAEAE 480
Query: 68 -AIAMISYYASSSEPAQVR 85
AIA Y P +VR
Sbjct: 481 TAIAKFQGYVYGGRPLEVR 499
>gi|344288053|ref|XP_003415765.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Loxodonta africana]
Length = 434
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|358383610|gb|EHK21274.1| hypothetical protein TRIVIDRAFT_116557, partial [Trichoderma virens
Gv29-8]
Length = 466
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 213 TNPYLPVA----PSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268
TNP +P A S +DA G LS ++ PE N + + VT DVL +F
Sbjct: 41 TNP-IPTAITSPRSGVDAGGILSPTTGFRRAAPEPNKRALYVGGLDQRVTEDVLRQIFET 99
Query: 269 FGPVQKIAMF-DKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT- 324
G VQ + + DKN G ++Y D A A + L G ++ +++ +Y +T
Sbjct: 100 TGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEI-RVNWAYQSNTT 158
Query: 325 --------------DLSIKVNND 333
DLS +VN+D
Sbjct: 159 SKEDTSNHFHIFVGDLSNEVNDD 181
>gi|355560081|gb|EHH16809.1| hypothetical protein EGK_12163 [Macaca mulatta]
gi|355747118|gb|EHH51732.1| hypothetical protein EGM_11167 [Macaca fascicularis]
Length = 436
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 213 TNPYLPVA----PSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268
TNP +P A S +DA G LS ++ PE N + + VT DVL +F
Sbjct: 39 TNP-IPTAITSPRSGVDAGGILSPTTGFRRAAPEPNKRALYVGGLDQRVTEDVLRQIFET 97
Query: 269 FGPVQKIAMF-DKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT- 324
G VQ + + DKN G ++Y D A A + L G ++ +++ +Y +T
Sbjct: 98 TGHVQNVKIIPDKNAKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEI-RVNWAYQSNTT 156
Query: 325 --------------DLSIKVNND 333
DLS +VN+D
Sbjct: 157 SKEDTSNHFHIFVGDLSNEVNDD 179
>gi|330790853|ref|XP_003283510.1| hypothetical protein DICPUDRAFT_147176 [Dictyostelium purpureum]
gi|325086620|gb|EGC40007.1| hypothetical protein DICPUDRAFT_147176 [Dictyostelium purpureum]
Length = 731
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
+ L +RN+ + C+E E++++ G++ T ++ +R AFI F DL A +
Sbjct: 237 RTLFVRNVAYSCSESEIVKIFSKIGEIKKT-FSLLESRGIAFITFYDLRDA----ERAKN 291
Query: 78 SSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAF 137
+ + G+++ + +S +E + + N + ++ R + + L FS++
Sbjct: 292 EIQGTTLDGRSIDIHFSIPKE------ESGIEDNAGFIHVKN---RNLPQNELRTFFSSY 342
Query: 138 GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
G + +T F + Q LV+F D A +G+ +
Sbjct: 343 GDIKDVTEFNRD---QGLVEFYDLRACEKALAEANGQKL 378
>gi|426249018|ref|XP_004018249.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Ovis aries]
Length = 433
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|345789080|ref|XP_850695.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 6 [Canis lupus familiaris]
Length = 436
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|344288049|ref|XP_003415763.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Loxodonta africana]
Length = 436
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|432882375|ref|XP_004073999.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oryzias latipes]
Length = 395
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEFADLNQAIAMISYY 75
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F A +S
Sbjct: 37 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVSSL 96
Query: 76 ASSSEPAQV 84
++ AQ+
Sbjct: 97 KATGVQAQM 105
>gi|348588901|ref|XP_003480203.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 1 [Cavia porcellus]
Length = 415
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|345789082|ref|XP_003433173.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Canis lupus familiaris]
Length = 433
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|410301218|gb|JAA29209.1| RNA binding motif, single stranded interacting protein 3 [Pan
troglodytes]
Length = 420
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|51317353|ref|NP_001003792.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 3
[Homo sapiens]
gi|296228269|ref|XP_002759725.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Callithrix jacchus]
gi|397511670|ref|XP_003826192.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Pan paniscus]
gi|403289973|ref|XP_003936111.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Saimiri boliviensis boliviensis]
gi|426339811|ref|XP_004033833.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Gorilla gorilla gorilla]
gi|119584812|gb|EAW64408.1| RNA binding motif, single stranded interacting protein, isoform
CRA_d [Homo sapiens]
Length = 419
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 108
>gi|351702929|gb|EHB05848.1| RNA-binding motif, single-stranded-interacting protein 3, partial
[Heterocephalus glaber]
Length = 412
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 39 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 85
>gi|348529959|ref|XP_003452479.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like [Oreochromis niloticus]
Length = 415
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|345789084|ref|XP_862040.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 7 [Canis lupus familiaris]
Length = 418
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 108
>gi|344288055|ref|XP_003415766.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Loxodonta africana]
Length = 418
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 108
>gi|334313190|ref|XP_003339836.1| PREDICTED: zinc finger protein 638 [Monodelphis domestica]
Length = 1890
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 19 VLHLRNLPWEC-TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77
++H+ LP + TE+++I++ +PFGKV + + +RN+A++E +A+A Y
Sbjct: 675 IIHVSELPTDGYTEQDIIKIVQPFGKV--SDLLIVPSRNEAYLEMK-FKEAVAAAVKYCE 731
Query: 78 SSEPAQVRGKTVYLQYSNRQEI 99
++ P QV+GK V + + ++++
Sbjct: 732 TT-PVQVKGKRVKISTAGKKKL 752
>gi|222616398|gb|EEE52530.1| hypothetical protein OsJ_34752 [Oryza sativa Japonica Group]
Length = 555
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL ++ + Y VT +VLH V+ +G V + ++AL+ + A A+ A
Sbjct: 42 VLRVTVSQIIYPVTSEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATH 101
Query: 305 GHCIYDGGFCKLHISY 320
G IYDGG C L + +
Sbjct: 102 GRDIYDGG-CLLDVQH 116
>gi|348588903|ref|XP_003480204.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 2 [Cavia porcellus]
Length = 431
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|198459570|ref|XP_001361426.2| GA21622 [Drosophila pseudoobscura pseudoobscura]
gi|198136733|gb|EAL26004.2| GA21622 [Drosophila pseudoobscura pseudoobscura]
Length = 369
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 287 LIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPM 345
++++ ++ A A+E L G IY G C L I Y++ L++ N D S DYTL +
Sbjct: 1 MVEFDNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTGKS 59
Query: 346 VNSQPS---ILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGW 391
+ S P +L QP P++G GA F PP P H T W
Sbjct: 60 LFSIPENVVMLESQP-PLLGP------GAAF--PPFGAPEYHPTTPDNW 99
>gi|348588905|ref|XP_003480205.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 3 [Cavia porcellus]
Length = 414
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|355715852|gb|AES05423.1| RNA binding motif, single stranded interacting protein [Mustela
putorius furo]
Length = 456
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 115 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 161
>gi|285803166|pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 43.1 bits (100), Expect = 0.25, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAM 71
PS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Query: 72 I 72
+
Sbjct: 61 V 61
>gi|363730217|ref|XP_418760.3| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Gallus gallus]
Length = 439
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 75 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 121
>gi|82697065|gb|AAI08403.1| RNA binding motif, single stranded interacting protein [Mus
musculus]
Length = 414
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|348588907|ref|XP_003480206.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 4 [Cavia porcellus]
Length = 428
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|287324761|ref|NP_001165594.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 1
[Mus musculus]
gi|125987522|sp|Q8BWL5.2|RBMS3_MOUSE RecName: Full=RNA-binding motif, single-stranded-interacting
protein 3
gi|148677316|gb|EDL09263.1| RNA binding motif, single stranded interacting protein, isoform
CRA_b [Mus musculus]
Length = 431
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|341889641|gb|EGT45576.1| hypothetical protein CAEBREN_06918 [Caenorhabditis brenneri]
Length = 348
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGL---QALIQYPDVQTAVVAKEALEG 305
+ N+ Y VT D + +FS GPV I M D+ G I++PD+QTA A L G
Sbjct: 21 VGNISYDVTEDTIRAMFSKAGPVMSIKMVHDRETGKPKGYGFIEFPDIQTADTAIRVLNG 80
Query: 306 HCI 308
H +
Sbjct: 81 HEL 83
>gi|287324670|ref|NP_001165593.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 2
[Mus musculus]
gi|26326603|dbj|BAC27045.1| unnamed protein product [Mus musculus]
gi|148677319|gb|EDL09266.1| RNA binding motif, single stranded interacting protein, isoform
CRA_e [Mus musculus]
Length = 415
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|392350402|ref|XP_001061329.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
3-like isoform 4 [Rattus norvegicus]
Length = 415
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|354467701|ref|XP_003496307.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 4 [Cricetulus griseus]
Length = 430
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|285803163|pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
gi|285803165|pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 43.1 bits (100), Expect = 0.27, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAM 71
PS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 2 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Query: 72 I 72
+
Sbjct: 62 V 62
>gi|218191723|gb|EEC74150.1| hypothetical protein OsI_09231 [Oryza sativa Indica Group]
Length = 609
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304
VL ++ + Y VT +VLH V+ +G V + ++AL+ + A A+ A
Sbjct: 56 VLRVTVSQIIYPVTYEVLHQVYDTYGAVAVQVLAVSTWQVKALVSFMSSHDAERARSATH 115
Query: 305 GHCIYDGGFCKLHISY 320
G IYDGG C L + +
Sbjct: 116 GRDIYDGG-CLLDVQH 130
>gi|148747313|ref|NP_848775.2| RNA-binding motif, single-stranded-interacting protein 3 isoform 3
[Mus musculus]
gi|26328705|dbj|BAC28091.1| unnamed protein product [Mus musculus]
gi|109730747|gb|AAI17842.1| RNA binding motif, single stranded interacting protein [Mus
musculus]
gi|148677317|gb|EDL09264.1| RNA binding motif, single stranded interacting protein, isoform
CRA_c [Mus musculus]
Length = 414
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|26342432|dbj|BAC34878.1| unnamed protein product [Mus musculus]
Length = 422
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 49 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 95
>gi|395816927|ref|XP_003781934.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
[Otolemur garnettii]
Length = 425
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
>gi|354467695|ref|XP_003496304.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 1 [Cricetulus griseus]
Length = 414
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|26326473|dbj|BAC26980.1| unnamed protein product [Mus musculus]
Length = 414
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|344238365|gb|EGV94468.1| RNA-binding motif, single-stranded-interacting protein 3
[Cricetulus griseus]
Length = 381
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 24 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 70
>gi|354467703|ref|XP_003496308.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 5 [Cricetulus griseus]
Length = 413
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|145547070|ref|XP_001459217.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427041|emb|CAK91820.1| unnamed protein product [Paramecium tetraurelia]
Length = 647
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 241 PESNVLLASIENM-QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 299
P +NV+L I N ++ D VFS FG +Q++ +F+++ + +++ + ++A+ A
Sbjct: 12 PRTNVILVVITNKANKTLSHDKYFKVFSPFGTIQRMLIFERSLTWKTFVEFDNPESALKA 71
Query: 300 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
+ + D +++ S+ T ++ + NN DYT
Sbjct: 72 RSQMNDKFFCDDNTLLMNVYASKLTYITFQENNTGGVDYT 111
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 170
NV+LV I + +S D VFS FG + ++ FE++ ++ V+F + E+A A++
Sbjct: 15 NVILVVITNKANKTLSHDKYFKVFSPFGTIQRMLIFERSLTWKTFVEFDNPESALKARSQ 74
Query: 171 LDGR 174
++ +
Sbjct: 75 MNDK 78
>gi|354467699|ref|XP_003496306.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 3 [Cricetulus griseus]
Length = 386
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>gi|354467697|ref|XP_003496305.1| PREDICTED: RNA-binding motif, single-stranded-interacting protein 3
isoform 2 [Cricetulus griseus]
Length = 402
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,310,910,384
Number of Sequences: 23463169
Number of extensions: 316308849
Number of successful extensions: 1035095
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 3421
Number of HSP's that attempted gapping in prelim test: 1014708
Number of HSP's gapped (non-prelim): 17177
length of query: 448
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 302
effective length of database: 8,933,572,693
effective search space: 2697938953286
effective search space used: 2697938953286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)