BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013150
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/339 (90%), Positives = 327/339 (96%)
Query: 1 MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFI 60
M+SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFG VVNTKCNVGANRNQAFI
Sbjct: 1 MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFI 60
Query: 61 EFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGT 120
EF DLNQAI MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV GNVLLVTIEG
Sbjct: 61 EFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVVGNVLLVTIEGD 120
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYL 180
DAR+VSIDVLHLVFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYL
Sbjct: 121 DARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYL 180
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
L E +G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+E
Sbjct: 181 LAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKME 240
Query: 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300
PESNVLLASIENMQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAK
Sbjct: 241 PESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAK 300
Query: 301 EALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 339
EALEGHCIYDGGFCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 301 EALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 558 bits (1439), Expect = e-158, Method: Compositional matrix adjust.
Identities = 277/416 (66%), Positives = 321/416 (77%), Gaps = 29/416 (6%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
S S Q QFRYTQ PSKV+HLRNLPWEC EEELI+L K FGK+VNTK NVGANRNQAF+EF
Sbjct: 2 SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61
Query: 63 ADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA 122
ADLNQAI+M+SYYASSSEPAQ+RGKTVY+QYSNR EIVNN++ DV GNVLLVT EG ++
Sbjct: 62 ADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNQSPGDVPGNVLLVTFEGVES 121
Query: 123 RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182
VSIDV+HLVFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLS 181
Query: 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE 242
++G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +
Sbjct: 182 AHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQ 241
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
SNVLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEA
Sbjct: 242 SNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEA 301
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
LEGHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V
Sbjct: 302 LEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVS 354
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 418
+A PP AGW P A G PYM P S P G
Sbjct: 355 GSA-----------PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 184/339 (54%), Gaps = 48/339 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
SKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ D++ A++ + ++
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVSSAVSALQFF- 61
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVSIDVLHL 132
++ +P +RG+ VY+Q+S+ QE+ N D +LLVTI +++DVLH
Sbjct: 62 TNVQPT-IRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHM-LYPITVDVLHQ 119
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
VFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L I
Sbjct: 120 VFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLDI 172
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS--G 228
+S +L V + + RSRDYTNP LP SAI A+ G
Sbjct: 173 QFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGG 232
Query: 229 QLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288
L G+ G VL++++ ++ D L +FS +G + +I + +N AL+
Sbjct: 233 GLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHALV 287
Query: 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327
Q D A +A L+G ++ +L +++S+H +++
Sbjct: 288 QMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 127/270 (47%), Gaps = 53/270 (19%)
Query: 128 DVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187
D+L L F FG + K+ A QAL+Q D +A SA N+ P
Sbjct: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP 66
Query: 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247
T+R ++ V+F SH+ + I+ + + G++ EP + +LL
Sbjct: 67 -TIR-----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILL 102
Query: 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 307
+I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G
Sbjct: 103 VTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRN 162
Query: 308 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQ 367
IYDG C+L I +S +L + NNDRSRDYT P+ P G+ P G T
Sbjct: 163 IYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQK-----GRSSHPCYGDTGVA 216
Query: 368 YNGAQFAPPPPEQPMMHQPTAAGWGAVPPA 397
Y P+ AA G +PP
Sbjct: 217 Y---------PQMANTSAIAAAFGGGLPPG 237
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF 62
+RY P+K++HL LP + TEEE++ + G VVNTK + QA ++F
Sbjct: 347 YRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQF 399
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
S+ +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 --SAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE------PES 243
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 304 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 176/373 (47%), Gaps = 82/373 (21%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75
PS+VLH+R LP E TE E+I LG PFGKV N G +NQAF+E A AI M++YY
Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYY 114
Query: 76 ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVT---------IEGTDA---- 122
++ + +R + +Y+QYSN +E+ + T A VL + GT
Sbjct: 115 SAVT--PHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESA 172
Query: 123 ---------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETAS 165
R+ V++DVLH +FS FG V KI TF K FQAL+Q+ D A
Sbjct: 173 VTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQ 232
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--- 222
AK ALDG++I CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 233 QAKLALDGQNIYN-------ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPA 285
Query: 223 ---AIDAS-----------GQLS------------------VGLDGKKLEPESNVLLASI 250
AI A+ G LS VG+ G + +L++++
Sbjct: 286 LDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNL 345
Query: 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310
+ VT L +F +G VQ++ + N ALIQ D + +A L G +Y
Sbjct: 346 N--EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY- 401
Query: 311 GGFCKLHISYSRH 323
G + ++ S+H
Sbjct: 402 GKIIR--VTLSKH 412
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 302 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H ++ +
Sbjct: 397 HKLHGK---PIRITLSKHQNVQL 416
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 334 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVQMADGNQAQLA 390
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + + P +RIT S H ++ + + + T Y
Sbjct: 391 MSHLNGHKL--HGKP-------IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 441
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ + L ++FS+ G V K F + AL
Sbjct: 442 GSKNF----QNIFPPSATL--HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMAL 495
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 496 IQMGSVEEAVQALIDLHNHDL--GENHHLRVSFSKST 530
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS LHL N+P +EE+L L G VV +R A I+ + +A+
Sbjct: 446 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 505
Query: 70 -AMISYY 75
A+I +
Sbjct: 506 QALIDLH 512
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 184/383 (48%), Gaps = 83/383 (21%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMHTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LPVAPS--AIDASGQLSVGLDGKKLE----------------------------PESNVL 246
LP S ++D + + GL + ++VL
Sbjct: 280 LPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVL 339
Query: 247 LASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNGGLQALIQYPDVQTAVVAKEALEG 305
L S N + VT L ++F +G VQ++ +F+K AL+Q D A +A L G
Sbjct: 340 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKVLFNKKE--NALVQMADGSQAQLAMSHLNG 396
Query: 306 HCIYDGGFCKLHISYSRHTDLSI 328
H ++ + I+ S+H + +
Sbjct: 397 HKLHGK---PVRITLSKHQSVQL 416
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALVQ +D A A
Sbjct: 334 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKE--NALVQMADGSQAQLA 390
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + +RIT S H + + + + T Y
Sbjct: 391 MSHLNGHKLHGK---------PVRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKP 441
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +++ D L ++FS+ G + K F + AL
Sbjct: 442 GSKNF----QNIFPPSATL--HLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMAL 495
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 496 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 530
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS LHL N+P +E++L L G +V +R A I+ + +AI
Sbjct: 446 FQNIFPPSATLHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAI 505
Query: 70 -AMISYY 75
A+I +
Sbjct: 506 QALIDLH 512
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 46/246 (18%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R T PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE + A
Sbjct: 51 RSTGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMSTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 166
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 225
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 226 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 278
Query: 217 LPVAPS 222
LP S
Sbjct: 279 LPSGDS 284
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQ 290
Query: 356 QPVPMVGA----TANQYNGA 371
GA +A+ Y GA
Sbjct: 291 TMAAAFGAPGIMSASPYAGA 310
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F +G V ++ F K ALV+ +D A A
Sbjct: 358 AGNSVLL-VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE--NALVEMADGSQAQLA 414
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + ++RIT S H + + + + T Y
Sbjct: 415 MSHLNGHKLHGK---------SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKP 465
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +V+ D L +FS+ G V K F + AL
Sbjct: 466 GSKNF----QNIFPPSATL--HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMAL 519
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ AV A L H + G L +S+S+ T
Sbjct: 520 IQMGSVEEAVQALIELHNHDL--GENHHLRVSFSKST 554
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS LHL N+P +E++L L G VV +R A I+ + +A+
Sbjct: 470 FQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 529
Query: 70 -AMISYY 75
A+I +
Sbjct: 530 QALIELH 536
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 180/398 (45%), Gaps = 106/398 (26%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYT----------------------------NPY-------------------LPVA 220
+SRD+T +PY +P
Sbjct: 240 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAV 299
Query: 221 PSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272
P A+ SG++++ G P ++VLL + N + +T L ++F +G V
Sbjct: 300 PGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDV 356
Query: 273 QKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
++ MF+K AL+Q D A +A L G +Y
Sbjct: 357 HRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 392
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 227 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 282
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 342
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 343 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 402
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 403 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 431
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 304
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKN 169
+VLLVT D ++ L ++F +G VH++ F K ALVQ +D A A N
Sbjct: 329 SVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMN 384
Query: 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 229
L G+ + +L R T S H + + + + T + G
Sbjct: 385 HLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGS 435
Query: 230 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQ 289
+ + + P S L + N+ +VT+D L +F+ G K F + ALIQ
Sbjct: 436 KNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQ 489
Query: 290 YPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
V+ A+ A L H + G L +S+S+ T
Sbjct: 490 LGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 133/259 (51%), Gaps = 46/259 (17%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 51 RSAGVPSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 108
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDA-------- 122
M++YY S + P +RG+ +Y+Q+SN +E+ + + V L + +
Sbjct: 109 MVNYYTSVA-PV-LRGQPIYIQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAAS 166
Query: 123 -----------------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQ 157
R+ V++DVLH +FS FG V KI TF K FQAL+Q
Sbjct: 167 AAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQ 226
Query: 158 FSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P L
Sbjct: 227 YADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDL 279
Query: 218 PVAPS--AIDASGQLSVGL 234
P S ++D + + GL
Sbjct: 280 PSGDSQPSLDQTMAAAFGL 298
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 352
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS LHL N+P +E++L L G VV +R A I+ + +A+
Sbjct: 442 FQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 501
Query: 70 -AMISYY 75
A+I +
Sbjct: 502 QALIELH 508
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 176/396 (44%), Gaps = 102/396 (25%)
Query: 2 ASVSSQPQFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA 58
A+ + +F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QA
Sbjct: 11 ANGNDNKKFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKG--KSQA 68
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TT 105
F+E A A+ MI+YY + +R + VY+QYSN +E+ + +
Sbjct: 69 FLEMASEEAAVTMINYYTPVTP--HLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVS 126
Query: 106 ADVAGNVLLVTIEGTDARL------------------VSIDVLHLVFSAFGFVHKITTFE 147
A +GN+ L + L V+++VLH +FS FG V KI TF
Sbjct: 127 AVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFT 186
Query: 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207
K FQAL+Q++D A AK ALDG++I CTLRI +S T L+VK+ +
Sbjct: 187 KNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLRIDFSKLTSLNVKYNND 239
Query: 208 RSRDYTNPYLPVA----------PSAIDASGQLS-------------------------- 231
+SRD+T LP +A A G +S
Sbjct: 240 KSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAV 299
Query: 232 -----------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274
+ + G P ++VLL + N + +T L ++F +G V +
Sbjct: 300 PGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHR 358
Query: 275 IA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ MF+K AL+Q D A +A L G +Y
Sbjct: 359 VKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLY 392
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 142 EGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 201
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 202 NAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 258
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P +
Sbjct: 259 ------------------------EPPM-----AAAFGA--PGIMSSPYAGAAGFAPAIA 287
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 288 FPQAAGLSVSAVPGALG 304
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D ++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 325 IPGNSVLLVTNLNPD--FITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQ 380
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 381 IAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 431
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F+ G K F +
Sbjct: 432 KPGSKNF----QNIFPPSATL--HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKM 485
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 486 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 522
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 130/242 (53%), Gaps = 46/242 (19%)
Query: 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIA 70
R PS+V+H+R LP + TE E+I LG PFGKV N G +NQAFIE A
Sbjct: 52 RSAGVPSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANT 109
Query: 71 MISYYASSSEPAQVRGKTVYLQYSNRQEI-----------------VNNKTTADV----- 108
M++YY S + P +RG+ +Y+Q+SN +E+ VN+ + ++
Sbjct: 110 MVNYYTSVT-PV-LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAAS 167
Query: 109 ----------AGN--VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALV 156
AG VL + +E V++DVLH +FS FG V KI TF K FQAL+
Sbjct: 168 AAAVDAGMAMAGQSPVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 226
Query: 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPY 216
Q++D +A AK +LDG++I CTLRI +S T L+VK+ + +SRDYT P
Sbjct: 227 QYADPVSAQHAKLSLDGQNIYN-------ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 279
Query: 217 LP 218
LP
Sbjct: 280 LP 281
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 295
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 296 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 355
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 356 QPVPMVGA----TANQYNGAQFAP 375
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAI 69
F+ PPS LHL N+P +EE+L L G +V +R A I+ + +AI
Sbjct: 472 FQNIFPPSATLHLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAI 531
Query: 70 -AMISYY 75
A+I +
Sbjct: 532 QALIDLH 538
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 21/217 (9%)
Query: 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSA 167
AGN +L+ + + V+ L ++F + V ++ F K ALVQ +D A A
Sbjct: 360 AGNSVLL-VSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKE--NALVQMADGSQAQLA 416
Query: 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227
+ L+G + +RIT S H ++ + + + T Y
Sbjct: 417 MSHLNGHKLHGK---------PVRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 467
Query: 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 287
G + + + P S L + N+ +++ + L ++FS+ G + K F + AL
Sbjct: 468 GSKNF----QNIFPPSATL--HLSNIPPSISEEDLKILFSSNGGIVKGFKFFQKDRKMAL 521
Query: 288 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
IQ V+ A+ A L H + G L +S+S+ T
Sbjct: 522 IQMGSVEEAIQALIDLHNHDL--GENHHLRVSFSKST 556
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%)
Query: 9 QFRYTQPP---SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
+F+ +PP S+VLHLR +P + TE E+I LG PFGKV N G ++QAF+E A
Sbjct: 47 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKG--KSQAFLEMASE 104
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK-------------TTADVAGNV 112
A+ M++YY + +R + VY+QYSN +E+ + +A +G++
Sbjct: 105 EAAVTMVNYYTPIT--PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSL 162
Query: 113 LLV---TIEGTDA-------RL--------VSIDVLHLVFSAFGFVHKITTFEKTAGFQA 154
L + EGT R+ V+++VLH +FS FG V KI TF K FQA
Sbjct: 163 ALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQA 222
Query: 155 LVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTN 214
L+Q++D A AK ALDG++I CTLRI +S T L+VK+ + +SRD+T
Sbjct: 223 LLQYADPVNAHYAKMALDGQNIYNAC-------CTLRIDFSKLTSLNVKYNNDKSRDFTR 275
Query: 215 PYLPVA 220
LP
Sbjct: 276 LDLPTG 281
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 34/197 (17%)
Query: 235 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 171 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 230
Query: 295 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 354
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 231 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL-- 287
Query: 355 QQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGS 414
E PM AA +GA P S P G + P
Sbjct: 288 ------------------------EPPM-----AAAFGA--PGIISSPYAGAAGFAPAIG 316
Query: 415 MPMGPGMMQMHMPGQSG 431
P G+ +PG G
Sbjct: 317 FPQATGLSVPAVPGALG 333
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 23/219 (10%)
Query: 108 VAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT-FEKTAGFQALVQFSDTETAS 165
+ GN VLLVT D L++ L ++F +G VH++ F K ALVQ +D A
Sbjct: 354 IPGNSVLLVTNLNPD--LITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADANQAQ 409
Query: 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
A N L G+ + +L R T S H + + + + T +
Sbjct: 410 LAMNHLSGQRLYGKVL---------RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFK 460
Query: 226 ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQ 285
G + + + P S L + N+ +VT+D L +F G K F +
Sbjct: 461 KPGSKNF----QNIFPPSATL--HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKM 514
Query: 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324
ALIQ V+ A+ A L H + G L +S+S+ T
Sbjct: 515 ALIQLGSVEEAIQALIELHNHDL--GENHHLRVSFSKST 551
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 130
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A EP + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 131 AAD--EPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 187
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 188 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 239
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 240 EYARPTRLNVIRNDNDSWDYTKPYL 264
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISY 74
S V+H+R L E +L+E + FG + C V + QA +EF +++ A +++
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTI----CYVMMMPFKRQALVEFENIDSAKECVTF 179
Query: 75 YASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAG--NVLLVTIEGTDARLVSIDVLHL 132
A P + G+ + YS + I T D +G VLL++I+ +++DVL+
Sbjct: 180 AADV--PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNP-LYPITVDVLYT 236
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192
V + G V +I F++ G QA+V+F A AK AL+G I G CTL+I
Sbjct: 237 VCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------YAGCCTLKI 288
Query: 193 TYSAHTDLSVKFQSHRSRDYTNPYL 217
Y+ T L+V + S DYT PYL
Sbjct: 289 EYARPTRLNVIRNDNDSWDYTKPYL 313
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 303 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 362
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 363 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 412
+ + + P P+ P+ G+ +P AS S G+ P
Sbjct: 330 DHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGS----PS 382
Query: 413 GSMPMGPGMMQMHM 426
GS+ M G+ Q+ M
Sbjct: 383 GSVVMVSGLHQLKM 396
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 93 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 150
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 151 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 207
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 208 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 259
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 260 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 216 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 333
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 334 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 378
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
+ P S V+H+R L E +L+E + FG + + V + QA +EF D+ A
Sbjct: 96 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPI--SYVVVMPKKRQALVEFEDVLGACNA 153
Query: 72 ISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV--AGNVLLVTIEGTDARLVSIDV 129
++Y A + + G ++ YS Q+I + D +VLL TI ++ DV
Sbjct: 154 VNYAADNQ--IYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNP-IYSITTDV 210
Query: 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189
L+ + + G V +I F K G QA+V+F ++A AK +L+G I G CT
Sbjct: 211 LYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADI-------YSGCCT 262
Query: 190 LRITYSAHTDLSVKFQSHRSRDYTNPYL 217
L+I Y+ T L+V + DYTNP L
Sbjct: 263 LKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>sp|E9PT37|RBM20_RAT RNA-binding protein 20 OS=Rattus norvegicus GN=Rbm20 PE=2 SV=1
Length = 1207
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIE 61
S SS F + +V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E
Sbjct: 506 SASSGTNFAQRKGAGRVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLE 563
Query: 62 FADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
A A AM+ YY +PA + G+ + ++ S R +E+ K +VA
Sbjct: 564 MAYTEAAQAMVQYY--QEKPALINGEKLLIRMSTRYKELQLKKPGKNVA 610
>sp|Q3UQS8|RBM20_MOUSE RNA-binding protein 20 OS=Mus musculus GN=Rbm20 PE=1 SV=3
Length = 1199
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYY- 576
Query: 77 SSSEPAQVRGKTVYLQYSNR-QEIVNNKTTADVA 109
+PA + G+ + ++ S R +E+ K +VA
Sbjct: 577 -QEKPAIINGEKLLIRMSTRYKELQLKKPGKNVA 609
>sp|Q5T481|RBM20_HUMAN RNA-binding protein 20 OS=Homo sapiens GN=RBM20 PE=1 SV=3
Length = 1227
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 18 KVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
+V+H+ NLP CTE ++I LG PFGKV N + + NQAF+E A A AM+ YY
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYI--LMKSTNQAFLEMAYTEAAQAMVQYYQ 575
Query: 77 SSSEPAQVRGKTVYLQYSNR 96
S A + G+ + ++ S R
Sbjct: 576 EKS--AVINGEKLLIRMSKR 593
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 58/391 (14%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S L + +L E TE +L EL +G + + V ++R AFI + + +A+A
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDI--DRITVYSSRGFAFIYYRHVEEAVAA----K 70
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
+ + A + G + ++Y+ + + + NV S D L FS
Sbjct: 71 EALQGANLNGSQIKIEYARPAKPCKSLWVGGIGPNV-------------SKDDLEEEFSK 117
Query: 137 FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196
FG + + A + + + + A AK +++G+ MG LR+ +
Sbjct: 118 FGKIEDFRFLRERK--TAFIDYYEMDDALQAK-SMNGKP---------MGGSFLRVDF-L 164
Query: 197 HTDLSVKFQSHRSRDYTNPYLPVAP----SAIDASGQLSVGLDGKKLEPESNVLLASIEN 252
+ K Q S D N + P S D G + +P + +
Sbjct: 165 RSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDV---------QPSKVLWIGFPPT 215
Query: 253 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312
+LH FG ++++ + AL+++ + A KE L+G +
Sbjct: 216 ATQCNDEQILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN-- 271
Query: 313 FCKLHISYS------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGAT 364
++ I YS D S RSR + P S P G P+ G
Sbjct: 272 -PRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTN 330
Query: 365 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVP 395
YNGA++ ++P +P+A G G +P
Sbjct: 331 ERSYNGAEYNDVVGKEPNWRRPSANGTGILP 361
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 6 SQPQFRYTQP--PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63
SQ + Y +P P K L + + ++++L E FGK+ + + R AFI++
Sbjct: 81 SQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFR--FLRERKTAFIDYY 138
Query: 64 DLNQAIAMISYYASSSEPAQVRGKTVYLQ----------YSNRQEIVNNK-----TTADV 108
+++ A+ S + +R + Q Y NR +N+K + D
Sbjct: 139 EMDDALQAKSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDF 198
Query: 109 AGNV-----LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTET 163
G+V L + T + +LH FG + ++ ++ + F ALV+F E
Sbjct: 199 KGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSY-PSRNF-ALVEFRSAEE 256
Query: 164 ASSAKNALDGR 174
A K L GR
Sbjct: 257 ARQCKEGLQGR 267
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 217 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 276
L + P D SG S L L PE+ T L +F +G + +I
Sbjct: 3 LSMKPFRADDSGFQSNNLWVGSLTPET--------------TESDLTELFGRYGDIDRIT 48
Query: 277 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322
++ G A I Y V+ AV AKEAL+G + ++ I Y+R
Sbjct: 49 VYSSRGF--AFIYYRHVEEAVAAKEALQGANL---NGSQIKIEYAR 89
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIA 70
PPS+V++L ++P++ TEE++++L G V+N K G ++ AFIEF DL + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 71 MI 72
+
Sbjct: 75 AV 76
>sp|P08965|MEI2_SCHPO Meiosis protein mei2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mei2 PE=1 SV=1
Length = 750
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 24/186 (12%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L + NLP L+EL G V + + + F D+ QAI A
Sbjct: 194 SRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQ-----A 248
Query: 77 SSSEPAQ--VRGKTVYLQYSNR---QEIVNNKTTA---DVAGNVLLVTIEGTDARLVSID 128
+ S +Q + +Y Q+ R Q+++N T D LL+ ++G ++SI
Sbjct: 249 AKSLRSQRFFNDRLLYFQFCQRSSIQKMINQGATIQFLDDNEGQLLLNMQG--GSVLSIL 306
Query: 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188
L + FG + + Q + +F DT AS A + LDGR I C
Sbjct: 307 QLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRIIHN---------C 357
Query: 189 TLRITY 194
L++ Y
Sbjct: 358 CLQVAY 363
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 16 PSKVLHLRNLPWECTEEELIELGKPFGKV--VNTKCNVGANRNQAFIEFADLNQAIAMIS 73
PS+ L +RN+ + EL L +PFG++ + T C +R I + D+ A A +
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC---KSRGFVMISYYDIRAAHAAMR 252
Query: 74 YYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV-AGNVLLVTIEGTDARLVSIDVLHL 132
++ +R +T+ + +S +E N + D+ G +++ ++ T VS D L
Sbjct: 253 ALQNT----LLRKRTLDIHFSIPKE---NPSEKDMNQGTLVIFNVDTT----VSNDELLQ 301
Query: 133 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
+F A+G + +I F +++ D A +A AL+ I
Sbjct: 302 LFGAYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEI 344
>sp|Q5RBD3|RBMS3_PONAB RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo
abelii GN=RBMS3 PE=2 SV=1
Length = 436
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 62 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 108
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
L++ NLP E+EL + KPFG V++T+ AN + FA +
Sbjct: 141 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARM 186
>sp|Q6XE24|RBMS3_HUMAN RNA-binding motif, single-stranded-interacting protein 3 OS=Homo
sapiens GN=RBMS3 PE=1 SV=1
Length = 437
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 63 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 109
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL 65
L++ NLP E+EL + KPFG V++T+ AN + FA +
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARM 187
>sp|Q8BWL5|RBMS3_MOUSE RNA-binding motif, single-stranded-interacting protein 3 OS=Mus
musculus GN=Rbms3 PE=2 SV=2
Length = 431
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEF 62
L++R LP T+++LI+L +P+GK+V+TK + N NQ F++F
Sbjct: 58 LYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDF 104
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 28/220 (12%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-CNVGANRNQ---AFIEF---ADL 65
QP S L++ L TE L EL G+V + + C R A++ + AD
Sbjct: 49 NQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 108
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+A+ ++Y ++GK + +S R + GNV + ++ +
Sbjct: 109 ERALEDLNYTL-------IKGKPCRIMWSQRDPALRKTGQ----GNVFIKNLDSA----I 153
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
LH F+AFG + + G F ETA +A NA+ + + LL +
Sbjct: 154 DNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI--KHVNGMLLNDKK 211
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225
I+ D KF+ ++ ++TN Y+ S ID
Sbjct: 212 VFVGHHIS---KKDRQSKFEEMKA-NFTNVYIKNLDSEID 247
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76
S+ L ++N+P+ T EEL E+ + + G+N+ A++EF++ ++A +
Sbjct: 324 SRTLFVKNIPYSTTVEELQEIFENAKDIRIPTGKDGSNKGIAYVEFSNEDEANKAL---- 379
Query: 77 SSSEPAQVRGKTVYLQYS-NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135
+ A++ G+++++ ++ + + NK + VL+V A + D L VF
Sbjct: 380 EEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSA---TEDSLREVFE 436
Query: 136 AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA-----LDGRSI 176
+ + GF A ++FS E A A ++ ++GRSI
Sbjct: 437 KATSIRIPQNQGRAKGF-AFIEFSSAEDAKDAMDSCNNTEIEGRSI 481
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 105 TADVAGNVLLVTIEGTDARLVSIDV---LHLVFSAFGFVHKITTFE--KTAGFQALVQFS 159
TAD+ N + I+ + R+ ++ L+ +FS FG + + + K G QA V FS
Sbjct: 3 TADIPPN-QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRG-QAWVTFS 60
Query: 160 DTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS-AHTDLSVKFQ------------- 205
+ A A + ++ P Y P +R+ Y+ A +D K +
Sbjct: 61 EVTAAGHAVRQM--QNFPFYDKP-------MRLQYAKAKSDCLAKAEGTFVPKDKKRKQE 111
Query: 206 ---SHRSRDYTNPYLPVAPSAIDASGQLSVGL-----DGKKLEPESNVLLASIENMQYAV 257
+ D P PSA S V G++ P +N+L I+N+ +
Sbjct: 112 EKVERKREDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILF--IQNLPHET 169
Query: 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308
T +L ++F + ++I M D G+ A ++Y D A +A + L+G I
Sbjct: 170 TSMMLQLLFEQYPGFKEIRMIDAKPGI-AFVEYEDDVQASIAMQPLQGFKI 219
>sp|Q6EQX3|OML5_ORYSJ Protein MEI2-like 5 OS=Oryza sativa subsp. japonica GN=ML5 PE=2
SV=1
Length = 811
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 38/178 (21%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
Y + PS+ L +RN+ + EL L +PFG + + A +++ F+ M
Sbjct: 187 YGEHPSRTLFVRNINSNVEDSELRSLFEPFGDI---RSMYTATKHRGFV----------M 233
Query: 72 ISYY----------ASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADV-AGNVLLVTIEGT 120
ISYY A S+P +R + + + YS +E N + D+ G +++ +E
Sbjct: 234 ISYYDIRHARNAKTALQSKP--LRRRKLDIHYSIPKE---NPSDKDMNQGTLVIFNLEPA 288
Query: 121 DARLVSIDVLHLVFSAFGFVHKI--TTFEKTAGFQALVQFSDTETASSAKNALDGRSI 176
VS + L +F AFG V +I T ++ F ++F D A SA +L+ I
Sbjct: 289 ----VSNEELLQIFGAFGEVREIRETPHKRHHRF---IEFYDVRAAESALRSLNKSDI 339
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 57/205 (27%)
Query: 250 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFDKNGGL--QALIQYPDVQTAVVAKEAL 303
I N+ + D L+ +FS FG + I + +N + QA + + + +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDI-LVSRNLKMRGQAFVIFKETSSATNALRSM 72
Query: 304 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMVNSQPSILGQQP 357
+G YD + I YS+ +D+ K V DR R
Sbjct: 73 QGFPFYD---KPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVK-------------- 115
Query: 358 VPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPM 417
VP V N GA P P Q A Q MP M P M
Sbjct: 116 VPEVQGVKNAMPGAALLPGVPGQMA--------------AMQDMPGMTQAPRM------- 154
Query: 418 GPGMMQMHMPGQSGMQHHHGAMPPP 442
MHM GQ+ HH G MPPP
Sbjct: 155 ------MHMAGQAPYMHHPGMMPPP 173
>sp|Q3ZBP3|RBMS1_BOVIN RNA-binding motif, single-stranded-interacting protein 1 OS=Bos
taurus GN=RBMS1 PE=2 SV=1
Length = 403
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEFADLNQAIAMISYY 75
L++R LP T+++L++L +P+GK+V+TK + N+ F++F A +S
Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Query: 76 ASSSEPAQV 84
+S AQ+
Sbjct: 124 KASGVQAQM 132
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYY 75
L++ NLP E+EL + KPFG+V++T+ + G +R F + A+I ++
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 201
>sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1 OS=Homo
sapiens GN=RBMS1 PE=1 SV=3
Length = 406
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQA----FIEFADLNQAIAMISYY 75
L++R LP T+++L++L +P+GK+V+TK + N+ F++F A +S
Sbjct: 64 LYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL 123
Query: 76 ASSSEPAQV 84
+S AQ+
Sbjct: 124 KASGVQAQM 132
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYY 75
L++ NLP E+EL + KPFG+V++T+ + G +R F + A+I ++
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 201
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 28/212 (13%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-CNVGANRNQ---AFIEF---ADL 65
+QP S L++ L TE L EL G+V + + C R A++ + AD
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+A+ ++Y ++GK + +S R + GNV + ++ +
Sbjct: 103 ERALEDLNYTL-------IKGKPCRIMWSQRDPALRKTGQ----GNVFIKNLDAA----I 147
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
LH F+AFG + + G F ETA +A NA+ + + LL +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI--KHVNGMLLNDKK 205
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
I+ D KF+ ++ ++TN Y+
Sbjct: 206 VFVGHHIS---KKDRQSKFEEMKA-NFTNVYI 233
>sp|Q8VC70|RBMS2_MOUSE RNA-binding motif, single-stranded-interacting protein 2 OS=Mus
musculus GN=Rbms2 PE=2 SV=1
Length = 383
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYY 75
L++ NLP E+EL + KPFG+V++T+ GA+R F + A+I+++
Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHF 197
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEFADLNQAIAMISYY 75
L++R L T+++L++L +P+GK+V+TK + N+ F++F + A ++
Sbjct: 60 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL 119
Query: 76 ASSSEPAQV 84
+S AQ+
Sbjct: 120 KASGVQAQM 128
>sp|Q5PQP1|RBMS1_RAT RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus
norvegicus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEFADLNQAIAMISYY 75
L++R LP T+++L++L +P+GK+V+TK + N+ F++F A +S
Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL 123
Query: 76 ASSSEPAQV 84
+S AQ+
Sbjct: 124 KASGVQAQM 132
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYY 75
L++ NLP E+EL + KPFG+V++T+ + G +R F + A+I ++
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHF 201
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 28/212 (13%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-CNVGANRNQ---AFIEF---ADL 65
+QP S L++ L TE L EL G+V + + C R A++ + AD
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+A+ ++Y ++GK + +S R + GNV + ++ +
Sbjct: 107 ERALEDLNY-------TLIKGKPCRIMWSQRDPALRKTGQ----GNVFIKNLDAA----I 151
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
LH F+AFG + + G F ETA +A NA+ + + LL +
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI--KHVNGMLLNDKK 209
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
I+ D KF+ ++ ++TN Y+
Sbjct: 210 VFVGHHIS---KKDRQSKFEEMKA-NFTNVYI 237
>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
musculus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYY 75
L++ NLP E+EL + KPFG+V++T+ + GA+R F + A+I ++
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHF 201
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----AFIEF 62
L++R LP T+++L++L +P+GK+V+TK + N+ F++F
Sbjct: 64 LYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 28/211 (13%)
Query: 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-CNVGANRNQ---AFIEF---ADLN 66
QP S L++ L TE L EL G+V + + C R A++ + AD
Sbjct: 48 QPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGE 107
Query: 67 QAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVS 126
+A+ ++Y ++GK + +S R + GNV + ++ +
Sbjct: 108 RALEDLNY-------TLIKGKPCRIMWSQRDPALRKTGQ----GNVFIKNLDAA----ID 152
Query: 127 IDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186
LH F+AFG + + G F ETA +A NA+ + + LL +
Sbjct: 153 NKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI--KHVNGMLLNDKKV 210
Query: 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
I+ D KF+ ++ ++TN Y+
Sbjct: 211 FVGHHIS---KKDRQSKFEEMKA-NFTNVYI 237
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 38.9 bits (89), Expect = 0.077, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 15 PP--SKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-NVGANRNQAFIEFADLNQA 68
PP +++L+++NLP++ T EE+ E+ FG V + N R AF+ + D+ A
Sbjct: 14 PPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDA 70
Score = 38.1 bits (87), Expect = 0.16, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDV 293
G KL PE N +L I+N+ Y +T + ++ +F FG V++I + + + G A + Y D+
Sbjct: 10 GAKLPPEVNRIL-YIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRG-TAFVVYEDI 67
Query: 294 QTAVVAKEALEGH 306
A A E L G+
Sbjct: 68 FDAKTACEHLSGY 80
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 28/212 (13%)
Query: 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-CNVGANRNQ---AFIEF---ADL 65
+QP S L++ L TE L EL G+V + + C R A++ + AD
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 66 NQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLV 125
+A+ ++Y ++GK + +S R + GNV + ++ +
Sbjct: 104 ERALEDLNYTL-------IKGKPCRIMWSQRDPALRKTGQ----GNVFIKNLDSA----I 148
Query: 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185
LH F+AFG + + G F ETA +A NA+ + + LL +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAI--KHVNGMLLNDKK 206
Query: 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217
I+ D KF+ ++ ++TN Y+
Sbjct: 207 VFVGHHIS---KKDRQSKFEEMKA-NFTNVYI 234
>sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens GN=ZNF638 PE=1 SV=2
Length = 1978
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 3 SVSSQPQFRYTQPP--SKVLHLRNLPWE-CTEEELIELGKPFGKVVNTKCNVGANRNQAF 59
+VS Q + R Q VL + LP + CTEE++ +L +PFGKV + + R +A+
Sbjct: 659 AVSLQRKLRKEQSLHYGSVLLITELPEDGCTEEDVRKLFQPFGKVNDVL--IVPYRKEAY 716
Query: 60 IEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91
+E + +AI I Y ++ P ++GK+V +
Sbjct: 717 LEM-EFKEAITAIMKYIETT-PLTIKGKSVKI 746
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQ----A 58
+VS Q + +K L LRNL + C E++L L PFG++ + N A
Sbjct: 308 NVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
Query: 59 FIEFADLNQAIAMISYYASSSEPAQVR 85
+I+F D + A+ +Y ++P Q R
Sbjct: 368 YIDFHDADDAVR--AYLELDAKPFQGR 392
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEF---ADLNQAIAMISYYA 76
L++ NL + TEEEL EL P+G++ ++ + A +N AF++ A+ +A +
Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEI--SEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSA 136
++P ++R A N + ++ VS ++L F
Sbjct: 173 RKNKPIRIR----------------------FAPNATTIRVKNLTP-FVSNELLFKSFEV 209
Query: 137 FGFVHK----ITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190
FG V + + KT G + +V+F+ S A +AL S Y L ++ PC +
Sbjct: 210 FGQVERAVIIVDDRGKTTG-EGIVEFA---RKSGAMSALKYCSEKCYFLTSSLRPCVV 263
>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1
Length = 833
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 17 SKVLHLRNLPWECTEEELIELGKPF-----GKVVNTKCNVGANRNQAFIEFADLNQAIAM 71
SK + LR LP E ++ EL + F V K G +R AF+EF L +
Sbjct: 101 SKTIMLRGLPININENDIRELVESFEGPQPADVRLMKRKTGLSRGFAFVEFYHLQDST-- 158
Query: 72 ISYYASSSEPAQVRGKTVYLQYSN 95
S+ ++ + ++GKT+ + YSN
Sbjct: 159 -SWMEANQKKLVIQGKTIAMHYSN 181
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 309
+ N+ + +H +FSA+G V+ I M + A++ Y + +A+VA++AL ++
Sbjct: 4 VSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS--AIVSYESLSSAIVARDALHNRPVF 61
Query: 310 DG 311
+
Sbjct: 62 EN 63
>sp|Q64M78|OML4_ORYSJ Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2
SV=1
Length = 1001
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 222 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 281
SA D G L+ L+G+ L E + N+ V L ++F FG ++ + K+
Sbjct: 251 SANDGIGLLNGVLNGEHLYREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTACKH 310
Query: 282 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321
G +I Y D+++A+ AK L+ + KL I YS
Sbjct: 311 RGF-VMISYYDIRSALNAKMELQNKALRR---RKLDIHYS 346
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 34/160 (21%)
Query: 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKV--VNTKCNVGANRNQAFIEFADLNQAI 69
Y + PS+ L +RN+ + EL L + FG + + T C +++ F+
Sbjct: 269 YREQPSRTLFVRNINSNVEDSELKLLFEHFGDIRALYTAC-----KHRGFV--------- 314
Query: 70 AMISYYASSS--------EPAQVRGKTVYLQYSNRQEIVNNKTTADV-AGNVLLVTIEGT 120
MISYY S + +R + + + YS ++ N + D+ G ++L ++ +
Sbjct: 315 -MISYYDIRSALNAKMELQNKALRRRKLDIHYSIPKD---NPSEKDINQGTIVLFNVDLS 370
Query: 121 DARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSD 160
++ D LH +F +G + +I + G +++F D
Sbjct: 371 ----LTNDDLHKIFGDYGEIKEIRDTPQ-KGHHKIIEFYD 405
>sp|Q9WUF3|C8AP2_MOUSE CASP8-associated protein 2 OS=Mus musculus GN=Casp8ap2 PE=1 SV=2
Length = 1962
Score = 35.4 bits (80), Expect = 0.79, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 181 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 240
+PE G C R + T + S +R+ T LP A+ A+ QL + + K++
Sbjct: 578 VPEPSGTCDSRSLETTGTVACLPSGSEHNREETKSELPEPKEALLATSQLRISIPENKMK 637
Query: 241 PESNVLLASIEN 252
E +L S+EN
Sbjct: 638 EEKRLLFKSVEN 649
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,026,796
Number of Sequences: 539616
Number of extensions: 7450448
Number of successful extensions: 25163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 523
Number of HSP's that attempted gapping in prelim test: 23067
Number of HSP's gapped (non-prelim): 2031
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)