Query 013150
Match_columns 448
No_of_seqs 357 out of 2331
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 00:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.4E-48 7.4E-53 395.7 36.9 294 16-327 1-354 (481)
2 KOG1190 Polypyrimidine tract-b 100.0 1.1E-47 2.4E-52 355.8 24.7 324 1-342 8-391 (492)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.9E-44 1.7E-48 352.2 34.2 283 15-324 1-349 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-42 3.2E-47 362.9 34.8 265 16-325 87-365 (562)
5 KOG0117 Heterogeneous nuclear 100.0 6E-40 1.3E-44 308.0 34.4 244 14-326 80-333 (506)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-39 2.7E-44 340.8 36.2 245 19-324 2-261 (562)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-39 3E-44 329.9 28.2 241 16-326 57-309 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2E-38 4.4E-43 323.9 32.8 282 18-324 97-480 (481)
9 KOG0145 RNA-binding protein EL 100.0 6.9E-38 1.5E-42 274.7 25.4 282 15-323 38-357 (360)
10 KOG0148 Apoptosis-promoting RN 100.0 3.3E-38 7.3E-43 278.5 22.8 232 15-325 4-239 (321)
11 TIGR01622 SF-CC1 splicing fact 100.0 2.1E-36 4.6E-41 309.3 31.3 289 15-325 87-449 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.1E-35 1.1E-39 303.2 29.8 277 14-324 172-502 (509)
13 KOG1456 Heterogeneous nuclear 100.0 6.8E-34 1.5E-38 261.2 26.9 296 13-327 27-366 (494)
14 TIGR01645 half-pint poly-U bin 100.0 2.6E-33 5.7E-38 284.5 32.9 168 16-197 106-283 (612)
15 KOG0144 RNA-binding protein CU 100.0 1.1E-33 2.4E-38 264.6 18.7 165 16-198 33-206 (510)
16 KOG0127 Nucleolar protein fibr 100.0 6.6E-31 1.4E-35 252.4 25.3 287 18-324 6-378 (678)
17 KOG0123 Polyadenylate-binding 100.0 7.8E-30 1.7E-34 248.2 21.9 236 18-323 2-245 (369)
18 KOG0123 Polyadenylate-binding 100.0 4E-30 8.8E-35 250.2 19.1 256 20-323 79-348 (369)
19 TIGR01659 sex-lethal sex-letha 100.0 9.6E-30 2.1E-34 246.4 21.4 165 13-198 103-275 (346)
20 KOG1190 Polypyrimidine tract-b 100.0 2E-30 4.3E-35 241.2 14.0 237 108-360 26-264 (492)
21 TIGR01659 sex-lethal sex-letha 100.0 3.3E-28 7.1E-33 235.7 25.8 161 111-324 106-275 (346)
22 KOG1456 Heterogeneous nuclear 100.0 1.1E-28 2.4E-33 226.9 20.8 216 109-368 28-253 (494)
23 KOG0148 Apoptosis-promoting RN 100.0 2.2E-28 4.7E-33 216.5 17.9 180 3-198 48-238 (321)
24 KOG0131 Splicing factor 3b, su 99.9 5.5E-27 1.2E-31 196.3 13.1 161 113-327 10-180 (203)
25 KOG0110 RNA-binding protein (R 99.9 1.6E-26 3.4E-31 229.5 18.3 258 16-325 384-694 (725)
26 TIGR01645 half-pint poly-U bin 99.9 1E-25 2.2E-30 229.3 24.5 171 110-324 105-284 (612)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 4.8E-26 1E-30 231.4 20.5 225 16-273 137-369 (578)
28 KOG0124 Polypyrimidine tract-b 99.9 1E-25 2.3E-30 206.8 19.2 165 18-196 114-288 (544)
29 KOG0144 RNA-binding protein CU 99.9 7.5E-26 1.6E-30 212.2 13.4 169 110-326 32-208 (510)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.6E-25 1.4E-29 217.0 20.2 161 112-325 3-172 (352)
31 KOG0147 Transcriptional coacti 99.9 1.3E-24 2.8E-29 210.5 15.0 288 17-325 179-529 (549)
32 KOG0131 Splicing factor 3b, su 99.9 6.3E-24 1.4E-28 178.0 12.7 164 14-199 6-178 (203)
33 KOG0117 Heterogeneous nuclear 99.9 1E-23 2.2E-28 199.0 15.4 165 15-199 162-332 (506)
34 TIGR01622 SF-CC1 splicing fact 99.9 7.9E-23 1.7E-27 209.2 20.3 168 112-323 89-265 (457)
35 KOG4212 RNA-binding protein hn 99.9 1.3E-21 2.8E-26 183.9 25.3 158 13-175 40-280 (608)
36 KOG0145 RNA-binding protein EL 99.9 4.9E-23 1.1E-27 181.4 14.1 160 113-325 42-210 (360)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-22 2.7E-27 210.6 19.7 169 15-198 293-502 (509)
38 KOG0109 RNA-binding protein LA 99.9 2.3E-23 4.9E-28 186.5 10.6 146 19-197 4-149 (346)
39 KOG0109 RNA-binding protein LA 99.9 1.7E-22 3.6E-27 181.0 10.5 148 113-324 3-150 (346)
40 KOG0146 RNA-binding protein ET 99.8 2.2E-20 4.7E-25 165.4 14.8 83 238-326 280-367 (371)
41 KOG0127 Nucleolar protein fibr 99.8 5.2E-20 1.1E-24 177.7 16.1 179 113-324 6-196 (678)
42 KOG0110 RNA-binding protein (R 99.8 4.1E-20 8.9E-25 184.1 15.5 266 16-322 226-596 (725)
43 KOG4206 Spliceosomal protein s 99.8 2.1E-19 4.6E-24 157.1 17.9 194 114-322 11-220 (221)
44 KOG4211 Splicing factor hnRNP- 99.8 4.2E-18 9.1E-23 163.5 28.1 278 14-311 7-348 (510)
45 KOG4206 Spliceosomal protein s 99.8 2.2E-18 4.7E-23 150.7 15.6 167 14-196 6-220 (221)
46 KOG0105 Alternative splicing f 99.8 1.7E-17 3.8E-22 139.4 15.5 156 14-177 3-176 (241)
47 KOG0124 Polypyrimidine tract-b 99.8 1.6E-18 3.4E-23 159.7 8.7 164 111-321 112-287 (544)
48 KOG4205 RNA-binding protein mu 99.7 1.6E-17 3.6E-22 156.4 10.3 167 16-201 5-179 (311)
49 KOG0120 Splicing factor U2AF, 99.7 1.3E-16 2.7E-21 157.5 15.2 273 16-325 174-493 (500)
50 KOG1457 RNA binding protein (c 99.7 1.5E-15 3.3E-20 131.5 15.0 195 107-310 29-275 (284)
51 PLN03134 glycine-rich RNA-bind 99.7 3.8E-16 8.2E-21 132.9 10.5 81 14-98 31-115 (144)
52 KOG0147 Transcriptional coacti 99.7 5.9E-16 1.3E-20 150.8 12.7 162 20-198 281-528 (549)
53 KOG0105 Alternative splicing f 99.6 1.9E-14 4.1E-19 121.3 15.8 171 111-310 5-177 (241)
54 KOG1548 Transcription elongati 99.6 4.2E-14 9.1E-19 130.4 18.0 167 17-197 134-351 (382)
55 KOG1457 RNA binding protein (c 99.6 3.8E-14 8.3E-19 123.0 14.3 156 17-177 34-274 (284)
56 KOG0106 Alternative splicing f 99.6 3.4E-15 7.3E-20 132.3 7.4 156 18-195 2-168 (216)
57 PF00076 RRM_1: RNA recognitio 99.5 2E-14 4.2E-19 107.0 8.3 67 20-90 1-70 (70)
58 PLN03134 glycine-rich RNA-bind 99.5 3E-14 6.5E-19 121.2 10.2 77 242-324 33-114 (144)
59 KOG0106 Alternative splicing f 99.5 1.4E-14 3.1E-19 128.3 8.0 166 113-320 2-167 (216)
60 KOG0114 Predicted RNA-binding 99.5 1.6E-13 3.5E-18 104.7 9.0 87 8-98 9-96 (124)
61 KOG1365 RNA-binding protein Fu 99.5 2.7E-12 5.9E-17 119.7 18.4 282 15-327 58-365 (508)
62 PLN03120 nucleic acid binding 99.5 1.7E-13 3.6E-18 124.8 9.8 76 17-97 4-80 (260)
63 PF14259 RRM_6: RNA recognitio 99.5 2.8E-13 6.1E-18 100.9 9.2 67 20-90 1-70 (70)
64 KOG0107 Alternative splicing f 99.5 1.2E-13 2.7E-18 115.7 7.9 74 248-325 13-86 (195)
65 KOG1548 Transcription elongati 99.4 2.1E-12 4.6E-17 119.3 15.0 195 110-323 132-351 (382)
66 KOG0107 Alternative splicing f 99.4 1.9E-13 4.1E-18 114.6 7.2 78 16-98 9-86 (195)
67 PF13893 RRM_5: RNA recognitio 99.4 5.4E-13 1.2E-17 94.6 7.9 56 262-321 1-56 (56)
68 PF00076 RRM_1: RNA recognitio 99.4 3.3E-13 7.2E-18 100.3 7.2 66 248-317 1-70 (70)
69 KOG4205 RNA-binding protein mu 99.4 4.7E-13 1E-17 126.4 9.9 166 111-327 5-179 (311)
70 KOG0122 Translation initiation 99.4 3.8E-13 8.3E-18 118.6 8.3 78 16-97 188-269 (270)
71 KOG0114 Predicted RNA-binding 99.4 9.3E-13 2E-17 100.6 9.2 77 242-324 17-95 (124)
72 KOG0121 Nuclear cap-binding pr 99.4 3.5E-13 7.7E-18 106.9 6.5 76 16-95 35-114 (153)
73 KOG0125 Ataxin 2-binding prote 99.4 6.3E-13 1.4E-17 121.8 9.0 77 17-97 96-174 (376)
74 KOG0149 Predicted RNA-binding 99.4 2.6E-13 5.7E-18 119.2 6.0 72 18-94 13-88 (247)
75 COG0724 RNA-binding proteins ( 99.4 2.9E-12 6.2E-17 121.7 13.4 126 17-147 115-259 (306)
76 KOG4212 RNA-binding protein hn 99.4 2.3E-11 5E-16 115.3 18.1 197 109-321 41-291 (608)
77 KOG0122 Translation initiation 99.4 1.3E-12 2.8E-17 115.3 8.4 77 242-324 188-269 (270)
78 KOG0132 RNA polymerase II C-te 99.4 3.5E-11 7.7E-16 121.7 19.1 76 242-324 420-495 (894)
79 PLN03121 nucleic acid binding 99.3 3.9E-12 8.5E-17 113.9 9.5 75 16-95 4-79 (243)
80 smart00362 RRM_2 RNA recogniti 99.3 6.8E-12 1.5E-16 93.0 8.9 70 19-92 1-72 (72)
81 PLN03213 repressor of silencin 99.3 4.6E-12 1E-16 121.7 9.0 79 15-97 8-88 (759)
82 KOG4211 Splicing factor hnRNP- 99.3 6.6E-11 1.4E-15 114.5 16.9 166 109-320 7-178 (510)
83 PLN03120 nucleic acid binding 99.3 8E-12 1.7E-16 113.9 10.2 74 243-323 4-79 (260)
84 KOG0113 U1 small nuclear ribon 99.3 8.8E-12 1.9E-16 113.0 9.5 85 10-98 94-182 (335)
85 KOG0121 Nuclear cap-binding pr 99.3 5.7E-12 1.2E-16 100.1 7.1 74 242-321 35-113 (153)
86 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.3E-16 87.1 8.0 56 130-195 1-56 (56)
87 KOG0130 RNA-binding protein RB 99.3 6.1E-12 1.3E-16 100.8 5.7 77 16-96 71-151 (170)
88 KOG0111 Cyclophilin-type pepti 99.3 5.3E-12 1.1E-16 109.4 5.3 86 14-103 7-96 (298)
89 KOG0120 Splicing factor U2AF, 99.3 2.1E-11 4.4E-16 120.9 10.2 165 18-197 290-491 (500)
90 PF14259 RRM_6: RNA recognitio 99.3 1.6E-11 3.4E-16 91.3 7.2 66 248-317 1-70 (70)
91 KOG0111 Cyclophilin-type pepti 99.2 4.4E-12 9.6E-17 109.9 4.1 80 243-328 10-94 (298)
92 KOG4207 Predicted splicing fac 99.2 1.1E-11 2.4E-16 106.6 6.3 77 16-96 12-92 (256)
93 cd00590 RRM RRM (RNA recogniti 99.2 5.2E-11 1.1E-15 88.7 9.1 71 19-93 1-74 (74)
94 smart00360 RRM RNA recognition 99.2 3.4E-11 7.4E-16 88.8 7.8 67 22-92 1-71 (71)
95 KOG0125 Ataxin 2-binding prote 99.2 3.8E-11 8.3E-16 110.2 9.3 75 244-324 97-174 (376)
96 PLN03213 repressor of silencin 99.2 5E-11 1.1E-15 114.7 9.8 76 246-325 11-89 (759)
97 KOG0132 RNA polymerase II C-te 99.2 2.6E-09 5.7E-14 108.4 21.9 77 113-201 422-498 (894)
98 KOG4207 Predicted splicing fac 99.2 1.9E-11 4.2E-16 105.1 5.7 76 244-325 14-94 (256)
99 smart00362 RRM_2 RNA recogniti 99.2 1.2E-10 2.5E-15 86.2 8.6 67 248-318 2-71 (72)
100 PLN03121 nucleic acid binding 99.2 1.3E-10 2.8E-15 104.2 10.0 73 243-322 5-79 (243)
101 KOG0108 mRNA cleavage and poly 99.2 6.1E-11 1.3E-15 117.0 8.6 78 18-99 19-100 (435)
102 KOG0126 Predicted RNA-binding 99.2 5.9E-12 1.3E-16 106.1 0.3 73 16-92 34-110 (219)
103 smart00360 RRM RNA recognition 99.1 1.8E-10 3.9E-15 84.8 7.8 66 250-319 1-71 (71)
104 KOG0130 RNA-binding protein RB 99.1 1.3E-10 2.9E-15 93.2 7.2 75 243-323 72-151 (170)
105 KOG4660 Protein Mei2, essentia 99.1 7E-10 1.5E-14 109.1 13.1 163 14-197 72-249 (549)
106 cd00590 RRM RRM (RNA recogniti 99.1 5.7E-10 1.2E-14 82.9 9.3 69 248-320 2-74 (74)
107 COG0724 RNA-binding proteins ( 99.1 1.9E-09 4.1E-14 102.2 14.5 141 112-280 115-260 (306)
108 KOG0153 Predicted RNA-binding 99.1 4.1E-10 8.8E-15 104.4 8.8 80 12-96 223-302 (377)
109 KOG4454 RNA binding protein (R 99.0 5E-11 1.1E-15 103.5 1.0 140 13-175 5-149 (267)
110 KOG0149 Predicted RNA-binding 99.0 4.7E-10 1E-14 99.0 6.8 76 111-197 11-90 (247)
111 KOG0129 Predicted RNA-binding 99.0 9.3E-09 2E-13 100.5 16.3 144 17-169 259-431 (520)
112 KOG0126 Predicted RNA-binding 99.0 3.1E-11 6.7E-16 101.8 -1.1 70 247-320 37-111 (219)
113 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.9E-14 80.8 7.2 58 30-91 1-69 (70)
114 KOG0146 RNA-binding protein ET 99.0 4.4E-10 9.6E-15 100.4 5.0 85 10-98 278-366 (371)
115 smart00361 RRM_1 RNA recogniti 99.0 1.6E-09 3.4E-14 80.4 6.8 56 259-318 2-69 (70)
116 KOG0113 U1 small nuclear ribon 98.9 4.7E-09 1E-13 95.5 10.0 79 241-325 99-182 (335)
117 KOG0108 mRNA cleavage and poly 98.9 2.2E-09 4.9E-14 106.0 7.7 77 244-326 19-100 (435)
118 KOG1365 RNA-binding protein Fu 98.9 9.7E-10 2.1E-14 102.9 4.7 169 17-200 161-364 (508)
119 KOG4208 Nucleolar RNA-binding 98.9 8.7E-09 1.9E-13 89.3 8.1 82 12-97 44-130 (214)
120 KOG4307 RNA binding protein RB 98.8 6.8E-08 1.5E-12 97.0 15.2 80 10-93 427-510 (944)
121 KOG0415 Predicted peptidyl pro 98.8 4.6E-09 1E-13 97.5 6.2 81 12-96 234-318 (479)
122 KOG0153 Predicted RNA-binding 98.8 1E-08 2.3E-13 95.2 8.2 78 239-323 224-302 (377)
123 KOG0128 RNA-binding protein SA 98.8 2.5E-10 5.3E-15 117.1 -3.0 229 18-323 572-814 (881)
124 KOG0112 Large RNA-binding prot 98.8 2.8E-09 6.1E-14 109.9 4.5 157 16-197 371-530 (975)
125 KOG4307 RNA binding protein RB 98.8 1.4E-07 3E-12 94.9 15.5 190 110-321 309-511 (944)
126 KOG4454 RNA binding protein (R 98.8 1.2E-09 2.7E-14 95.0 0.8 138 113-311 10-153 (267)
127 KOG0112 Large RNA-binding prot 98.8 5.1E-09 1.1E-13 108.0 4.4 155 114-324 374-531 (975)
128 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.5E-08 3.3E-13 99.4 7.3 79 15-97 403-485 (940)
129 KOG4660 Protein Mei2, essentia 98.7 9.3E-09 2E-13 101.3 4.3 179 107-324 72-250 (549)
130 KOG0415 Predicted peptidyl pro 98.7 2.2E-08 4.7E-13 93.1 6.4 82 239-325 235-320 (479)
131 KOG2193 IGF-II mRNA-binding pr 98.6 3.1E-09 6.7E-14 100.7 -1.5 152 18-197 2-156 (584)
132 KOG0116 RasGAP SH3 binding pro 98.6 4.8E-08 1E-12 96.2 6.2 72 17-93 288-363 (419)
133 KOG0128 RNA-binding protein SA 98.6 4.5E-09 9.9E-14 108.0 -1.2 141 17-197 667-814 (881)
134 KOG0533 RRM motif-containing p 98.5 2E-07 4.3E-12 85.0 7.5 76 16-95 82-160 (243)
135 KOG4210 Nuclear localization s 98.5 1.8E-07 3.8E-12 88.6 6.4 168 16-198 87-264 (285)
136 KOG4849 mRNA cleavage factor I 98.5 2.8E-06 6.1E-11 79.1 13.8 82 241-325 76-164 (498)
137 PF11608 Limkain-b1: Limkain b 98.5 9.2E-07 2E-11 65.6 7.7 68 248-324 5-77 (90)
138 KOG0129 Predicted RNA-binding 98.4 3.5E-06 7.7E-11 82.8 13.4 156 112-302 259-432 (520)
139 KOG4208 Nucleolar RNA-binding 98.4 6.3E-07 1.4E-11 77.9 7.3 73 248-324 52-130 (214)
140 KOG4661 Hsp27-ERE-TATA-binding 98.4 7.8E-07 1.7E-11 87.6 8.3 78 242-324 404-485 (940)
141 KOG0226 RNA-binding proteins [ 98.4 2.4E-07 5.3E-12 82.7 3.8 73 248-324 193-270 (290)
142 KOG0151 Predicted splicing reg 98.4 6.1E-07 1.3E-11 90.7 6.6 82 240-326 171-259 (877)
143 KOG0116 RasGAP SH3 binding pro 98.3 2.7E-06 5.9E-11 83.9 10.6 74 248-325 291-368 (419)
144 PF11608 Limkain-b1: Limkain b 98.3 2.3E-06 5E-11 63.6 7.4 70 18-97 3-77 (90)
145 KOG0226 RNA-binding proteins [ 98.3 6.8E-07 1.5E-11 79.9 4.9 164 18-198 97-270 (290)
146 KOG2193 IGF-II mRNA-binding pr 98.3 1.7E-07 3.7E-12 89.2 0.6 154 115-325 4-158 (584)
147 KOG0151 Predicted splicing reg 98.3 1.5E-06 3.3E-11 87.9 6.8 80 15-98 172-258 (877)
148 KOG4210 Nuclear localization s 98.3 8.8E-07 1.9E-11 83.8 4.9 168 112-324 88-264 (285)
149 PF04059 RRM_2: RNA recognitio 98.2 8E-06 1.7E-10 63.8 8.2 60 18-77 2-67 (97)
150 KOG0533 RRM motif-containing p 98.2 6.1E-06 1.3E-10 75.4 8.4 77 246-325 84-163 (243)
151 PF08777 RRM_3: RNA binding mo 98.2 5.8E-06 1.3E-10 66.2 6.6 58 18-77 2-59 (105)
152 KOG4209 Splicing factor RNPS1, 98.1 4.8E-06 1.1E-10 76.2 5.5 79 13-96 97-179 (231)
153 KOG1924 RhoA GTPase effector D 98.0 1.5E-05 3.4E-10 81.6 8.0 17 28-44 82-98 (1102)
154 PF08777 RRM_3: RNA binding mo 97.9 3.5E-05 7.6E-10 61.6 6.2 58 245-306 3-60 (105)
155 KOG4209 Splicing factor RNPS1, 97.8 3.1E-05 6.6E-10 71.0 6.2 75 243-324 101-180 (231)
156 KOG1924 RhoA GTPase effector D 97.8 0.00014 3E-09 74.9 10.2 11 161-171 209-219 (1102)
157 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.5E-05 9.8E-10 52.8 4.8 53 17-72 1-53 (53)
158 KOG4849 mRNA cleavage factor I 97.8 0.0018 4E-08 60.8 16.3 66 109-175 77-148 (498)
159 KOG1855 Predicted RNA-binding 97.6 7.6E-05 1.7E-09 71.8 5.4 69 8-76 222-307 (484)
160 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00026 5.6E-09 55.8 7.3 70 248-323 9-91 (100)
161 KOG4676 Splicing factor, argin 97.5 6.3E-05 1.4E-09 71.4 3.3 180 114-308 9-213 (479)
162 KOG1996 mRNA splicing factor [ 97.4 0.00024 5.1E-09 65.1 5.3 64 259-325 300-368 (378)
163 KOG1855 Predicted RNA-binding 97.4 0.00013 2.8E-09 70.3 3.7 64 242-307 230-310 (484)
164 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00041 9E-09 48.0 5.0 50 248-300 4-53 (53)
165 COG5175 MOT2 Transcriptional r 97.4 0.00046 9.9E-09 64.4 6.6 75 247-324 116-203 (480)
166 COG5175 MOT2 Transcriptional r 97.3 0.0006 1.3E-08 63.7 6.9 75 115-198 117-203 (480)
167 PF08952 DUF1866: Domain of un 97.2 0.0016 3.4E-08 54.5 7.8 78 240-325 24-108 (146)
168 PF04059 RRM_2: RNA recognitio 97.2 0.0027 5.8E-08 49.7 8.7 78 244-324 2-87 (97)
169 KOG4676 Splicing factor, argin 97.2 0.00028 6E-09 67.2 3.1 152 18-175 8-212 (479)
170 KOG1995 Conserved Zn-finger pr 97.1 0.00037 8E-09 66.0 3.4 77 17-97 66-154 (351)
171 KOG1995 Conserved Zn-finger pr 97.1 0.00066 1.4E-08 64.3 4.8 77 243-325 66-155 (351)
172 KOG0115 RNA-binding protein p5 97.1 0.0017 3.7E-08 58.7 7.0 90 160-306 3-95 (275)
173 KOG2314 Translation initiation 97.0 0.0023 4.9E-08 63.9 7.4 71 113-193 59-139 (698)
174 PF08675 RNA_bind: RNA binding 96.9 0.0045 9.8E-08 46.3 7.1 54 18-76 10-63 (87)
175 KOG2202 U2 snRNP splicing fact 96.9 0.00052 1.1E-08 62.1 2.6 61 260-324 83-148 (260)
176 KOG1996 mRNA splicing factor [ 96.9 0.0017 3.6E-08 59.7 5.6 62 128-198 301-367 (378)
177 KOG0115 RNA-binding protein p5 96.9 0.0018 4E-08 58.5 5.6 87 68-175 7-96 (275)
178 KOG2416 Acinus (induces apopto 96.8 0.0028 6.1E-08 63.7 6.6 86 241-330 442-528 (718)
179 KOG3152 TBP-binding protein, a 96.8 0.00092 2E-08 60.4 2.8 69 16-88 73-157 (278)
180 KOG3152 TBP-binding protein, a 96.6 0.002 4.2E-08 58.3 3.6 65 111-176 73-153 (278)
181 KOG2202 U2 snRNP splicing fact 96.5 0.0012 2.5E-08 59.9 1.8 55 135-198 91-148 (260)
182 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0093 2E-07 47.0 6.6 72 16-95 5-90 (100)
183 KOG2893 Zn finger protein [Gen 96.4 0.23 4.9E-06 44.6 15.1 29 286-321 51-80 (341)
184 KOG2314 Translation initiation 96.4 0.0083 1.8E-07 60.1 6.6 73 17-92 58-139 (698)
185 PF10309 DUF2414: Protein of u 96.2 0.017 3.8E-07 40.9 5.9 53 18-75 6-62 (62)
186 PF04847 Calcipressin: Calcipr 96.2 0.011 2.5E-07 52.1 6.2 64 258-326 8-73 (184)
187 PF08952 DUF1866: Domain of un 96.2 0.023 5E-07 47.6 7.4 76 13-97 23-107 (146)
188 KOG2416 Acinus (induces apopto 95.8 0.022 4.8E-07 57.5 6.8 84 109-203 443-527 (718)
189 PF08675 RNA_bind: RNA binding 95.7 0.03 6.4E-07 42.0 5.4 50 252-305 15-64 (87)
190 KOG4574 RNA-binding protein (c 95.7 0.0077 1.7E-07 63.0 3.1 71 250-325 303-375 (1007)
191 PF15023 DUF4523: Protein of u 95.7 0.046 9.9E-07 45.2 6.9 75 12-94 81-159 (166)
192 PF15023 DUF4523: Protein of u 95.6 0.064 1.4E-06 44.4 7.4 73 242-321 85-159 (166)
193 PF10309 DUF2414: Protein of u 95.5 0.08 1.7E-06 37.6 6.6 50 250-303 10-62 (62)
194 PF07292 NID: Nmi/IFP 35 domai 95.3 0.069 1.5E-06 40.9 6.3 81 58-151 1-83 (88)
195 KOG4574 RNA-binding protein (c 94.9 0.018 3.9E-07 60.4 2.9 71 117-197 303-373 (1007)
196 KOG4285 Mitotic phosphoprotein 94.9 0.075 1.6E-06 49.4 6.5 63 245-311 197-259 (350)
197 KOG2591 c-Mpl binding protein, 94.8 0.051 1.1E-06 54.5 5.4 70 16-90 174-245 (684)
198 KOG2068 MOT2 transcription fac 93.8 0.028 6.1E-07 53.2 1.3 77 17-97 77-163 (327)
199 KOG4285 Mitotic phosphoprotein 93.6 0.28 6E-06 45.8 7.4 58 113-175 198-255 (350)
200 PF04847 Calcipressin: Calcipr 93.5 0.14 3.1E-06 45.2 5.2 64 125-199 7-72 (184)
201 PF14111 DUF4283: Domain of un 93.4 0.078 1.7E-06 45.4 3.4 112 28-148 28-140 (153)
202 PF11767 SET_assoc: Histone ly 93.3 0.25 5.5E-06 35.6 5.3 51 256-311 11-61 (66)
203 KOG2068 MOT2 transcription fac 93.1 0.035 7.5E-07 52.6 0.8 75 247-324 79-163 (327)
204 KOG2236 Uncharacterized conser 93.0 1.5 3.2E-05 43.6 11.7 10 287-296 318-327 (483)
205 PF07576 BRAP2: BRCA1-associat 92.4 1.5 3.3E-05 35.2 9.2 61 250-310 18-81 (110)
206 KOG2253 U1 snRNP complex, subu 92.3 0.096 2.1E-06 53.9 2.7 78 6-93 30-107 (668)
207 KOG2591 c-Mpl binding protein, 92.1 4.3 9.2E-05 41.4 13.7 55 248-305 178-234 (684)
208 PF03880 DbpA: DbpA RNA bindin 92.0 0.28 6.2E-06 36.4 4.3 68 245-321 2-74 (74)
209 PF03467 Smg4_UPF3: Smg-4/UPF3 91.7 0.28 6E-06 43.2 4.6 61 17-77 7-77 (176)
210 PF07576 BRAP2: BRCA1-associat 91.3 1.6 3.6E-05 35.0 8.3 62 16-77 12-76 (110)
211 PF07292 NID: Nmi/IFP 35 domai 90.3 0.61 1.3E-05 35.7 4.7 83 154-284 1-84 (88)
212 PF03467 Smg4_UPF3: Smg-4/UPF3 89.7 0.37 8.1E-06 42.4 3.6 78 249-326 11-100 (176)
213 KOG2135 Proteins containing th 87.9 0.32 7E-06 48.1 2.1 61 258-324 386-446 (526)
214 KOG0804 Cytoplasmic Zn-finger 87.7 1.9 4.1E-05 42.7 7.1 66 243-310 74-142 (493)
215 PF10567 Nab6_mRNP_bdg: RNA-re 87.6 12 0.00026 35.3 11.9 153 16-173 14-213 (309)
216 KOG2135 Proteins containing th 85.8 0.46 1E-05 47.1 1.9 75 17-98 372-447 (526)
217 KOG2891 Surface glycoprotein [ 85.6 0.71 1.5E-05 42.5 2.9 74 125-199 173-269 (445)
218 KOG2318 Uncharacterized conser 85.5 4.6 9.9E-05 41.4 8.7 77 242-321 173-305 (650)
219 PF03880 DbpA: DbpA RNA bindin 85.1 4.1 9E-05 30.1 6.4 67 113-195 3-74 (74)
220 PF11767 SET_assoc: Histone ly 79.7 11 0.00025 27.1 6.7 45 28-77 11-55 (66)
221 KOG2318 Uncharacterized conser 78.4 7.9 0.00017 39.7 7.4 68 14-85 171-294 (650)
222 KOG0804 Cytoplasmic Zn-finger 78.2 5 0.00011 39.9 5.8 63 16-78 73-138 (493)
223 KOG2253 U1 snRNP complex, subu 75.7 4.4 9.5E-05 42.2 4.9 63 242-311 39-101 (668)
224 KOG4264 Nucleo-cytoplasmic pro 71.5 20 0.00043 36.4 8.1 9 285-293 443-451 (694)
225 KOG4019 Calcineurin-mediated s 67.5 10 0.00022 33.0 4.6 60 262-325 32-91 (193)
226 KOG4483 Uncharacterized conser 67.5 9.4 0.0002 37.3 4.8 55 110-170 391-446 (528)
227 KOG4672 Uncharacterized conser 67.0 26 0.00056 34.5 7.7 21 250-270 221-241 (487)
228 KOG4410 5-formyltetrahydrofola 66.9 9 0.00019 35.7 4.4 49 17-67 330-379 (396)
229 KOG1902 Putative signal transd 64.5 1.3E+02 0.0029 29.1 11.6 69 257-328 99-171 (441)
230 KOG1923 Rac1 GTPase effector F 58.8 47 0.001 35.6 8.3 8 83-90 49-56 (830)
231 KOG2375 Protein interacting wi 58.7 45 0.00097 35.9 8.3 10 155-164 296-305 (756)
232 PF08544 GHMP_kinases_C: GHMP 54.1 53 0.0011 24.3 6.2 45 259-304 36-80 (85)
233 PF14111 DUF4283: Domain of un 53.5 18 0.00038 30.6 3.8 37 244-280 103-140 (153)
234 KOG0119 Splicing factor 1/bran 53.2 1.2E+02 0.0026 30.9 9.8 21 153-173 206-226 (554)
235 PF10567 Nab6_mRNP_bdg: RNA-re 53.0 16 0.00035 34.4 3.6 77 243-324 15-108 (309)
236 PF03468 XS: XS domain; Inter 51.6 10 0.00022 30.9 1.8 49 19-67 10-68 (116)
237 COG5193 LHP1 La protein, small 48.4 4.8 0.0001 39.4 -0.6 62 15-76 172-247 (438)
238 KOG3671 Actin regulatory prote 47.9 2.6E+02 0.0057 28.7 11.1 64 110-174 74-138 (569)
239 PF08734 GYD: GYD domain; Int 46.1 58 0.0012 25.1 5.2 45 32-76 23-68 (91)
240 PF15513 DUF4651: Domain of un 44.6 38 0.00082 24.0 3.5 18 32-49 9-26 (62)
241 PF14893 PNMA: PNMA 44.3 20 0.00043 34.9 2.9 46 16-64 17-71 (331)
242 PRK14548 50S ribosomal protein 43.8 1E+02 0.0022 23.4 6.1 52 252-303 27-81 (84)
243 PF02714 DUF221: Domain of unk 42.2 47 0.001 32.1 5.3 22 154-175 1-22 (325)
244 KOG4213 RNA-binding protein La 40.9 31 0.00068 30.1 3.2 56 17-76 111-171 (205)
245 KOG3671 Actin regulatory prote 40.0 1.6E+02 0.0035 30.1 8.4 19 258-277 265-283 (569)
246 PF08734 GYD: GYD domain; Int 39.3 1.6E+02 0.0034 22.7 6.7 47 259-305 22-69 (91)
247 KOG2891 Surface glycoprotein [ 38.9 33 0.00072 31.9 3.3 37 13-49 145-193 (445)
248 COG5180 PBP1 Protein interacti 38.3 2.3E+02 0.005 28.7 9.1 13 407-419 583-595 (654)
249 PHA03378 EBNA-3B; Provisional 37.9 5.4E+02 0.012 27.7 12.7 7 56-62 278-284 (991)
250 TIGR03636 L23_arch archaeal ri 37.2 1.6E+02 0.0034 22.0 6.1 52 251-302 19-73 (77)
251 COG5638 Uncharacterized conser 35.2 1.9E+02 0.0041 28.7 7.8 81 237-320 140-294 (622)
252 KOG4008 rRNA processing protei 33.6 29 0.00062 31.7 2.0 37 12-48 35-71 (261)
253 PRK14959 DNA polymerase III su 32.7 2.4E+02 0.0051 30.3 8.9 7 112-118 150-156 (624)
254 KOG0119 Splicing factor 1/bran 32.4 4.7E+02 0.01 26.9 10.2 8 265-272 290-297 (554)
255 KOG4483 Uncharacterized conser 32.3 88 0.0019 30.9 5.1 53 245-302 393-446 (528)
256 PF07777 MFMR: G-box binding p 31.4 1.5E+02 0.0033 26.3 6.0 12 407-418 91-102 (189)
257 PF08544 GHMP_kinases_C: GHMP 29.7 1.6E+02 0.0035 21.6 5.4 43 32-76 37-80 (85)
258 PF13820 Nucleic_acid_bd: Puta 29.5 1.3E+02 0.0028 25.7 5.1 64 110-173 2-67 (149)
259 KOG4019 Calcineurin-mediated s 29.2 50 0.0011 28.9 2.6 59 129-198 31-90 (193)
260 PF02714 DUF221: Domain of unk 29.1 57 0.0012 31.5 3.5 34 286-324 1-34 (325)
261 PF08156 NOP5NT: NOP5NT (NUC12 28.5 23 0.0005 25.6 0.4 39 260-304 27-65 (67)
262 PRK11634 ATP-dependent RNA hel 23.6 9.4E+02 0.02 25.9 11.9 70 244-322 487-561 (629)
263 PHA03247 large tegument protei 22.7 5.2E+02 0.011 32.7 9.8 15 28-42 2296-2310(3151)
264 PF12385 Peptidase_C70: Papain 22.6 1.1E+02 0.0024 26.3 3.5 43 25-67 90-146 (166)
265 PF11411 DNA_ligase_IV: DNA li 22.5 63 0.0014 20.2 1.5 16 255-270 19-34 (36)
266 PF05036 SPOR: Sporulation rel 21.6 2E+02 0.0044 20.3 4.6 58 247-304 6-65 (76)
267 PRK11901 hypothetical protein; 21.3 2.3E+02 0.0051 27.4 5.7 48 257-305 254-306 (327)
268 TIGR02542 B_forsyth_147 Bacter 21.0 3.2E+02 0.007 22.1 5.5 20 128-147 16-35 (145)
269 PRK14548 50S ribosomal protein 20.7 2.6E+02 0.0057 21.2 4.9 51 25-75 28-81 (84)
270 KOG1676 K-homology type RNA bi 20.5 5.3E+02 0.012 27.2 8.4 11 128-138 159-169 (600)
271 PRK07400 30S ribosomal protein 20.3 4.5E+02 0.0098 25.5 7.8 36 124-160 12-53 (318)
272 KOG1295 Nonsense-mediated deca 20.3 1.4E+02 0.003 29.5 4.0 60 18-77 8-74 (376)
273 KOG4410 5-formyltetrahydrofola 20.1 1.5E+02 0.0032 28.0 4.0 47 248-296 333-380 (396)
No 1
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.4e-48 Score=395.74 Aligned_cols=294 Identities=33% Similarity=0.533 Sum_probs=244.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
||++|||+|||.++||+||+++|++||+|.+|++++ +|+||||+|.+.|+|++||+.++. ++..++|+.|+|+|+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~--~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATS--VPIYIRGQPAFFNYST 76 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhc--CCceEcCeEEEEEecC
Confidence 699999999999999999999999999999999884 589999999999999999998753 3789999999999998
Q ss_pred ccccccCCcc---ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhC
Q 013150 96 RQEIVNNKTT---ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172 (448)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~ 172 (448)
.++..+.... ...++.++.|+|.||+ ..++++.|+++|+.||.|.+|.+++++..++|||+|.+.++|.+|++.||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~-~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Ln 155 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPM-YPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALN 155 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCC-CCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhc
Confidence 7765443211 1235678899999996 88999999999999999999999887666789999999999999999999
Q ss_pred CCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCC-CCCcc---------------------CccCCc
Q 013150 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV-APSAI---------------------DASGQL 230 (448)
Q Consensus 173 g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------~~~~~~ 230 (448)
|..|+ .++++|+|+|++...+.+..++++.+|++++.++. ..... .+.+..
T Consensus 156 g~~i~-------~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 156 GADIY-------NGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred CCccc-------CCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99976 56789999999999999999999999999887641 00000 000000
Q ss_pred -----------cccCC-----------------------CCCCCCCCcEEEEEEeCCCc-cCCHHHHHHHHhhcCCeeEE
Q 013150 231 -----------SVGLD-----------------------GKKLEPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKI 275 (448)
Q Consensus 231 -----------~~~~~-----------------------~~~~~~~~~~l~v~v~nl~~-~vt~~~L~~~F~~fG~I~~v 275 (448)
.+++. .....+++++|| |.||+. .+|+++|+++|+.||.|.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nL~~~~vt~~~L~~lF~~yG~V~~v 306 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLM--VSGLHQEKVNCDRLFNLFCVYGNVERV 306 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEE--EeCCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 00000 001134667888 889997 69999999999999999999
Q ss_pred EEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccc
Q 013150 276 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327 (448)
Q Consensus 276 ~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~ 327 (448)
+++..++|+ |||+|.+.++|.+|++.|||..|.|+ +|+|++++.....
T Consensus 307 ki~~~~~g~-afV~f~~~~~A~~Ai~~lng~~l~g~---~l~v~~s~~~~~~ 354 (481)
T TIGR01649 307 KFMKNKKET-ALIEMADPYQAQLALTHLNGVKLFGK---PLRVCPSKQQNVQ 354 (481)
T ss_pred EEEeCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---eEEEEEccccccc
Confidence 998877776 99999999999999999999999999 9999999887643
No 2
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=1.1e-47 Score=355.82 Aligned_cols=324 Identities=48% Similarity=0.717 Sum_probs=273.5
Q ss_pred CCCCCCCCCCCCCC----CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 1 MASVSSQPQFRYTQ----PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 1 ~~~~~~~~~~~~~~----~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
||+...+++|+.+. ++|++|++||||+++||+||.+++.+||+|..+++++| +..||+||.|+++|...+.++.
T Consensus 8 ~~s~~~~~kf~~~~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG--knQAflem~d~~sAvtmv~~y~ 85 (492)
T KOG1190|consen 8 AASGNDSKKFKYTQRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG--KNQAFLEMADEESAVTMVNYYT 85 (492)
T ss_pred hccCCCCCCcccccccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc--chhhhhhhcchhhhhheeeccc
Confidence 35556777887655 48999999999999999999999999999999999988 6689999999999999998887
Q ss_pred cCCCCceeeCcEEEEeeccccccccCCc-------------------------------cccCCCCeEEEEEcCCCCCCC
Q 013150 77 SSSEPAQVRGKTVYLQYSNRQEIVNNKT-------------------------------TADVAGNVLLVTIEGTDARLV 125 (448)
Q Consensus 77 ~~~~~~~~~g~~i~v~~s~~~~~~~~~~-------------------------------~~~~~~~~~~v~V~nlp~~~~ 125 (448)
. ....+.|++|+|+|+++++.+.+.. ....++.+|.+.|.|+ .+.+
T Consensus 86 ~--~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m-~ypV 162 (492)
T KOG1190|consen 86 S--VTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENM-FYPV 162 (492)
T ss_pred c--cCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccc-eeee
Confidence 4 5778999999999999877654321 1234568999999999 6999
Q ss_pred cHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccccccc
Q 013150 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ 205 (448)
Q Consensus 126 ~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~ 205 (448)
+-|.|+++|++||.|.+|..+.+..+.+|+|+|.+.+.|..|...|+|+.|| .++|.|+|+||+...+.++++
T Consensus 163 slDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy-------ngcCtLrId~Sklt~LnvKyn 235 (492)
T KOG1190|consen 163 SLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIY-------NGCCTLRIDFSKLTDLNVKYN 235 (492)
T ss_pred EHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCccc-------CceeEEEeehhhcccceeecc
Confidence 9999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred ccCCcCCCCCCCCCCCC-----------------------ccCccCCccccCCCCCCCC-CCcEEEEEEeCC-CccCCHH
Q 013150 206 SHRSRDYTNPYLPVAPS-----------------------AIDASGQLSVGLDGKKLEP-ESNVLLASIENM-QYAVTLD 260 (448)
Q Consensus 206 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-~~~~l~v~v~nl-~~~vt~~ 260 (448)
++++||+++|.++.+.. ++........+.+++.... .+++|.| .|| .+.||.|
T Consensus 236 ndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv--snln~~~VT~d 313 (492)
T KOG1190|consen 236 NDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV--SNLNEEAVTPD 313 (492)
T ss_pred ccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE--ecCchhccchh
Confidence 99999999999987721 1111111111122111111 2567774 444 3679999
Q ss_pred HHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccccccCCCCCCCCCC
Q 013150 261 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTL 340 (448)
Q Consensus 261 ~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~~~~~~~~~~~~~~ 340 (448)
.|+.+|+.||+|.+|+|+.+|+. +|+|+|.|...|+-|+++|+|..++|+ +|||.|+|+..+.+.+.+++.++++.
T Consensus 314 ~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH~~vqlp~egq~d~glT~ 389 (492)
T KOG1190|consen 314 VLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKHTNVQLPREGQEDQGLTK 389 (492)
T ss_pred HHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccCccccCCCCCCccccccc
Confidence 99999999999999999887754 699999999999999999999999998 99999999999999998888777776
Q ss_pred CC
Q 013150 341 PS 342 (448)
Q Consensus 341 ~~ 342 (448)
..
T Consensus 390 dy 391 (492)
T KOG1190|consen 390 DY 391 (492)
T ss_pred cC
Confidence 55
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.9e-44 Score=352.16 Aligned_cols=283 Identities=16% Similarity=0.240 Sum_probs=212.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
++..+|||+|||.++||+||+++|++||+|.+|+|+ +++++|||||+|.+.++|++||+.++ +..+.|+.|.
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~----g~~l~g~~i~ 76 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN----GLRLQNKTIK 76 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc----cEEECCeeEE
Confidence 357889999999999999999999999999999994 45689999999999999999999998 6799999999
Q ss_pred EeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHH
Q 013150 91 LQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASS 166 (448)
Q Consensus 91 v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~ 166 (448)
|.|++..... .....|+|+||| ..+++++|+++|++||.|..+.++.+ ..+++|||+|++.++|++
T Consensus 77 v~~a~~~~~~---------~~~~~l~v~~l~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 77 VSYARPSSDS---------IKGANLYVSGLP-KTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred EEeecccccc---------cccceEEECCcc-ccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 9998654321 123458888997 89999999999999999999988763 356899999999999999
Q ss_pred HHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccccccc-ccCCcCCCCCCCCC-------C--------CCcc------
Q 013150 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ-SHRSRDYTNPYLPV-------A--------PSAI------ 224 (448)
Q Consensus 167 A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~-~~~~~~~~~~~~~~-------~--------~~~~------ 224 (448)
|++.|||..+. ....+|.|.|+.......... ......+.++.... . ....
T Consensus 147 ai~~l~g~~~~-------g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T TIGR01661 147 AIKTLNGTTPS-------GCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSA 219 (352)
T ss_pred HHHHhCCCccC-------CCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCc
Confidence 99999998754 445789999987433111000 00000000000000 0 0000
Q ss_pred ----------------------CccCCc-------c--ccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCee
Q 013150 225 ----------------------DASGQL-------S--VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273 (448)
Q Consensus 225 ----------------------~~~~~~-------~--~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~ 273 (448)
...+.. . .+.........+.+|| |+||+.++++++|+++|++||.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 220 GDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIF--VYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred chhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEE--EeCCCCCCCHHHHHHHHHhCCCeE
Confidence 000000 0 0000001112234677 899999999999999999999999
Q ss_pred EEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 274 KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 274 ~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
+++|+.+. +|+ |||+|.+.++|.+||+.|||..|.|+ .|+|+|+..+
T Consensus 298 ~v~i~~d~~t~~skG~-aFV~F~~~~~A~~Ai~~lnG~~~~gr---~i~V~~~~~~ 349 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGY-GFVSMTNYDEAAMAILSLNGYTLGNR---VLQVSFKTNK 349 (352)
T ss_pred EEEEeEcCCCCCccce-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEccCC
Confidence 99997553 576 99999999999999999999999999 9999997654
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-42 Score=362.86 Aligned_cols=265 Identities=17% Similarity=0.265 Sum_probs=210.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...+|||+|||.++|+++|+++|++||.|.+|++.. +++||||||+|.+.|+|++|++.++ +..+.|+.|+|.
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln----g~~~~~~~i~v~ 162 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN----GMLLNDKEVYVG 162 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc----ccEecCceEEEe
Confidence 356799999999999999999999999999999853 5689999999999999999999998 678999999997
Q ss_pred eccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc---CCCceEEEEeCCHHHHHHHHH
Q 013150 93 YSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~---~~~~~afVeF~~~e~A~~A~~ 169 (448)
....+..... ........|+|+||+ ..+++++|+++|++||.|.++.+.++ +.+++|||+|++.++|.+|++
T Consensus 163 ~~~~~~~~~~----~~~~~~~~l~V~nl~-~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 163 RFIKKHEREA----APLKKFTNLYVKNLD-PSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred cccccccccc----ccccCCCeEEEeCCC-CcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 5544332210 111233457788997 89999999999999999999988763 456789999999999999999
Q ss_pred HhCCCCCCCcCCCCCCC----CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcE
Q 013150 170 ALDGRSIPRYLLPENMG----PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245 (448)
Q Consensus 170 ~l~g~~~~~~~~~~~~~----~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (448)
.|||.. +. ++.+.|.++..+................ .......+++
T Consensus 238 ~l~g~~---------i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~---------------------~~~~~~~~~~ 287 (562)
T TIGR01628 238 EMNGKK---------IGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQ---------------------ERKMKAQGVN 287 (562)
T ss_pred HhCCcE---------ecccccceeeEeecccChhhhHHHHHhhHHhhhh---------------------hhhcccCCCE
Confidence 999998 55 8889998876443211000000000000 0001123556
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
|| |+||+.++|+++|+++|++||.|++++++.+. +|+ |||+|++.++|.+|++.|||..+.|+ +|+|.||
T Consensus 288 l~--V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~-gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V~~a 361 (562)
T TIGR01628 288 LY--VKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGF-GFVCFSNPEEANRAVTEMHGRMLGGK---PLYVALA 361 (562)
T ss_pred EE--EeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCe-EEEEeCCHHHHHHHHHHhcCCeeCCc---eeEEEec
Confidence 77 89999999999999999999999999997653 455 99999999999999999999999999 9999999
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+.++
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8765
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=307.96 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=205.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+..+.|||+.||.|+.|+||+.+|++.|+|-++++ .+|.+||||||.|.+.++|++||+.||+ ...-.|+.|
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn---~Eir~GK~i 156 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN---YEIRPGKLL 156 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC---ccccCCCEe
Confidence 356889999999999999999999999999999999 4567899999999999999999999994 333468889
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCc-eEEEEEec-----cCCCceEEEEeCCHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTET 163 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~-v~~v~~~~-----~~~~~~afVeF~~~e~ 163 (448)
.|+.|.. .++|||+|+| .+.++|+|.+.+++.++ |++|.+.. .+++|+|||+|+++..
T Consensus 157 gvc~Sva---------------n~RLFiG~IP-K~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~ 220 (506)
T KOG0117|consen 157 GVCVSVA---------------NCRLFIGNIP-KTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRA 220 (506)
T ss_pred EEEEeee---------------cceeEeccCC-ccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchh
Confidence 8886533 2458899998 88888888888888875 67777765 4467899999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCC
Q 013150 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243 (448)
Q Consensus 164 A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (448)
|..|.+.|-.-+|. ++++.+.|+|+.+..-.- ...-+
T Consensus 221 Aa~aRrKl~~g~~k-------lwgn~~tVdWAep~~e~d------------------------------------ed~ms 257 (506)
T KOG0117|consen 221 AAMARRKLMPGKIK-------LWGNAITVDWAEPEEEPD------------------------------------EDTMS 257 (506)
T ss_pred HHHHHhhccCCcee-------ecCCcceeeccCcccCCC------------------------------------hhhhh
Confidence 99999988877776 899999999998753110 00113
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
++..+||.||+.++|+|.|.++|+.||.|++|+.+++ +|||+|.+.++|.+|++.|||..|.|. .|.|.+||+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~---~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGS---PIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCc---eEEEEecCC
Confidence 3334449999999999999999999999999988854 599999999999999999999999999 999999998
Q ss_pred Ccc
Q 013150 324 TDL 326 (448)
Q Consensus 324 ~~~ 326 (448)
..-
T Consensus 331 ~~k 333 (506)
T KOG0117|consen 331 VDK 333 (506)
T ss_pred hhh
Confidence 753
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-39 Score=340.76 Aligned_cols=245 Identities=20% Similarity=0.284 Sum_probs=205.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
+|||+|||.++||++|+++|++||.|.+|+|. +++++|||||+|.+.++|++||+.++ ...+.|+.|+|.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln----~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMN----FKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC----CCEECCeeEEeecc
Confidence 79999999999999999999999999999994 36788999999999999999999998 56799999999998
Q ss_pred cccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHHHh
Q 013150 95 NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNAL 171 (448)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l 171 (448)
......+ .+....|+|+||+ .+++++.|+++|++||.|.+|.+.. ++++++|||+|++.++|.+|++.|
T Consensus 78 ~~~~~~~-------~~~~~~vfV~nLp-~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 78 QRDPSLR-------RSGVGNIFVKNLD-KSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred ccccccc-------ccCCCceEEcCCC-ccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 6543221 1223457888996 8999999999999999999998876 345789999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEe
Q 013150 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 251 (448)
Q Consensus 172 ~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~ 251 (448)
||.. +.++.|.|.....+..... . .....++|| |.
T Consensus 150 ng~~---------~~~~~i~v~~~~~~~~~~~---~-------------------------------~~~~~~~l~--V~ 184 (562)
T TIGR01628 150 NGML---------LNDKEVYVGRFIKKHEREA---A-------------------------------PLKKFTNLY--VK 184 (562)
T ss_pred cccE---------ecCceEEEecccccccccc---c-------------------------------cccCCCeEE--Ee
Confidence 9988 7799999876543321100 0 001245677 89
Q ss_pred CCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccC----CCceeEEEEEEeeC
Q 013150 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIY----DGGFCKLHISYSRH 323 (448)
Q Consensus 252 nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~----g~~~~~i~v~~ak~ 323 (448)
||+.++|+++|+++|+.||.|+++++..+. +|+ |||+|.+.++|.+|++.|||..+. |+ .|.|.+++.
T Consensus 185 nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~-afV~F~~~e~A~~Av~~l~g~~i~~~~~g~---~l~v~~a~~ 260 (562)
T TIGR01628 185 NLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGF-AFVNFEKHEDAAKAVEEMNGKKIGLAKEGK---KLYVGRAQK 260 (562)
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCcEecccccce---eeEeecccC
Confidence 999999999999999999999999997643 355 999999999999999999999998 87 899988754
Q ss_pred C
Q 013150 324 T 324 (448)
Q Consensus 324 ~ 324 (448)
+
T Consensus 261 k 261 (562)
T TIGR01628 261 R 261 (562)
T ss_pred h
Confidence 4
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-39 Score=329.90 Aligned_cols=241 Identities=17% Similarity=0.278 Sum_probs=198.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee-eCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQV-RGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~-~g~~i~v 91 (448)
..++|||+|||.++||++|+++|++||.|.+++|+ ++++||||||+|.+.|+|++||+.|+ +..+ .|+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~ln----g~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLN----NYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcC----CCeecCCccccc
Confidence 35889999999999999999999999999999984 46789999999999999999999998 4455 4777777
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCc-eEEEEEec-----cCCCceEEEEeCCHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETAS 165 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~-v~~v~~~~-----~~~~~~afVeF~~~e~A~ 165 (448)
..+.. ...|||+||| ..+++++|++.|++++. +.++.+.. .+++++|||+|+++++|.
T Consensus 133 ~~S~~---------------~~rLFVgNLP-~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa 196 (578)
T TIGR01648 133 CISVD---------------NCRLFVGGIP-KNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAA 196 (578)
T ss_pred ccccc---------------CceeEeecCC-cchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHH
Confidence 64421 2357888997 88999999999999864 45554432 345689999999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcE
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNV 245 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (448)
+|++.|+...+. ++++.|.|+|+..+..... . .....++
T Consensus 197 ~AirkL~~gki~-------l~Gr~I~VdwA~p~~~~d~----~------------------------------~~~~~k~ 235 (578)
T TIGR01648 197 MARRKLMPGRIQ-------LWGHVIAVDWAEPEEEVDE----D------------------------------VMAKVKI 235 (578)
T ss_pred HHHHHhhccceE-------ecCceEEEEeecccccccc----c------------------------------ccccccE
Confidence 999998765544 7799999999875431100 0 0012466
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhc--CCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~f--G~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
|| |.||+.++|+|+|+++|++| |.|++|++++ ++ |||+|.+.++|++|++.|||..|.|+ .|+|+||++
T Consensus 236 Lf--VgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r---gf-AFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp 306 (578)
T TIGR01648 236 LY--VRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR---DY-AFVHFEDREDAVKAMDELNGKELEGS---EIEVTLAKP 306 (578)
T ss_pred EE--EeCCCCCCCHHHHHHHHHhcCCCceEEEEeec---Ce-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEccC
Confidence 77 89999999999999999999 9999998764 44 99999999999999999999999998 999999987
Q ss_pred Ccc
Q 013150 324 TDL 326 (448)
Q Consensus 324 ~~~ 326 (448)
...
T Consensus 307 ~~~ 309 (578)
T TIGR01648 307 VDK 309 (578)
T ss_pred CCc
Confidence 643
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2e-38 Score=323.86 Aligned_cols=282 Identities=22% Similarity=0.299 Sum_probs=210.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC--cEEEEeecc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG--KTVYLQYSN 95 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g--~~i~v~~s~ 95 (448)
.+|||+||+.++|+++|+++|++||+|.+|+|.+.+.+++|||+|.+.++|.+|++.|| +..|.| ..|+|.|++
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Ln----g~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALN----GADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhc----CCcccCCceEEEEEEec
Confidence 36999999999999999999999999999999776666899999999999999999999 456644 578888877
Q ss_pred cccccc----CC-------------c-----------cc-----------------------------------------
Q 013150 96 RQEIVN----NK-------------T-----------TA----------------------------------------- 106 (448)
Q Consensus 96 ~~~~~~----~~-------------~-----------~~----------------------------------------- 106 (448)
...+.- ++ . ..
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 533210 00 0 00
Q ss_pred -----------------cCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHH
Q 013150 107 -----------------DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 107 -----------------~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~ 169 (448)
........|+|+||+...++++.|+++|+.||.|.+|++++.+ +++|||+|.+.++|..|++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-KETALIEMADPYQAQLALT 331 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-CCEEEEEECCHHHHHHHHH
Confidence 0001234677889973369999999999999999999998754 4799999999999999999
Q ss_pred HhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccc---cC---CcCCCCCCCCCCCCccCccCCccccCCCCCCCCCC
Q 013150 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS---HR---SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPES 243 (448)
Q Consensus 170 ~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (448)
.|||.. +.|++|+|.+++.......... .. .+++...... ...... ........+++
T Consensus 332 ~lng~~---------l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------r~~~~~-~~~~~~~~~ps 394 (481)
T TIGR01649 332 HLNGVK---------LFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNH-------RFKKPG-SANKNNIQPPS 394 (481)
T ss_pred HhCCCE---------ECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccc-------cCCCcc-cccccccCCCC
Confidence 999998 7799999999876543221100 00 0111110000 000000 00001123467
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCC--eeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce---eE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF---CK 315 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~--I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~---~~ 315 (448)
.+|| |.|||.++|+++|+++|+.||. |.+++++.++ +|+ |||+|++.++|.+|+..|||..|.++.+ -.
T Consensus 395 ~~L~--v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~-gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 395 ATLH--LSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKM-GLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred cEEE--EecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCccee-EEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 8888 8999999999999999999998 8899987654 455 9999999999999999999999998710 15
Q ss_pred EEEEEeeCC
Q 013150 316 LHISYSRHT 324 (448)
Q Consensus 316 i~v~~ak~~ 324 (448)
|+|+||+.+
T Consensus 472 lkv~fs~~~ 480 (481)
T TIGR01649 472 LKVSFSTSR 480 (481)
T ss_pred EEEEeccCC
Confidence 999999764
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.9e-38 Score=274.69 Aligned_cols=282 Identities=17% Similarity=0.261 Sum_probs=212.4
Q ss_pred CCccE-EEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 15 PPSKV-LHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 15 ~~s~~-l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..|+| |.|.-||.++|++|||.+|...|+|++|+++ +|.|-||+||.|.+++||++||..+| ++.+..+.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN----GLrLQ~KTI 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN----GLRLQNKTI 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhc----ceeeccceE
Confidence 34555 9999999999999999999999999999994 56678999999999999999999999 789999999
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETAS 165 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~ 165 (448)
+|+|+.+....- +.-.+||.+|| ..++..+|+++|++||.|..-+|+. .-++|.+||.|+..++|+
T Consensus 114 KVSyARPSs~~I---------k~aNLYvSGlP-ktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 114 KVSYARPSSDSI---------KDANLYVSGLP-KTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred EEEeccCChhhh---------cccceEEecCC-ccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 999998754221 22246677998 9999999999999999986655544 445678999999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccc------cccCCcCCCCCCCCC-----------CCC------
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKF------QSHRSRDYTNPYLPV-----------APS------ 222 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~------~~~~~~~~~~~~~~~-----------~~~------ 222 (448)
.|++.|||..-. ....+|.|.|+......... -....|++..|.-.. ...
T Consensus 184 ~AIk~lNG~~P~-------g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfs 256 (360)
T KOG0145|consen 184 EAIKGLNGQKPS-------GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFS 256 (360)
T ss_pred HHHHhccCCCCC-------CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCC
Confidence 999999999855 66789999999843211110 001113332221000 000
Q ss_pred ccCccCCccc-cCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHH
Q 013150 223 AIDASGQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTA 296 (448)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A 296 (448)
.+...+...+ +..-........+|| |-||..+.+|..|+++|.+||.|..|+++++- +|| |||.+.+.++|
T Consensus 257 P~~~d~m~~l~~~~lp~~~~~g~ciF--vYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf-gFVtMtNYdEA 333 (360)
T KOG0145|consen 257 PMTIDGMSGLAGVNLPGGPGGGWCIF--VYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF-GFVTMTNYDEA 333 (360)
T ss_pred CccccccceeeeeccCCCCCCeeEEE--EEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccce-eEEEecchHHH
Confidence 0000001111 001111122345666 67999999999999999999999999997642 566 99999999999
Q ss_pred HHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 297 VVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 297 ~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
..||..|||+.+.++ .|.|+|...
T Consensus 334 amAi~sLNGy~lg~r---vLQVsFKtn 357 (360)
T KOG0145|consen 334 AMAIASLNGYRLGDR---VLQVSFKTN 357 (360)
T ss_pred HHHHHHhcCccccce---EEEEEEecC
Confidence 999999999999999 999999643
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-38 Score=278.51 Aligned_cols=232 Identities=19% Similarity=0.312 Sum_probs=187.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
..-|||||+||..+|||+-|..||++.|.|.+++++.. + |.|.|+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------e--------------~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------E--------------LKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------h--------------hccccc
Confidence 45699999999999999999999999999999998633 1 223343
Q ss_pred cccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHH
Q 013150 95 NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNA 170 (448)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~ 170 (448)
...... +....+..++|+|+.| ...++-|+|++.|.+||+|.++++++ .+++||+||.|...+||+.||..
T Consensus 49 ~~p~nQ----sk~t~~~hfhvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 49 TAPGNQ----SKPTSNQHFHVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cCcccC----CCCccccceeEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 333211 1122345788999999 58999999999999999999999988 56889999999999999999999
Q ss_pred hCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEE
Q 013150 171 LDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 250 (448)
Q Consensus 171 l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v 250 (448)
|||+. +++|.||-+|+.++.... ..+...|..- -..+.+.+++++ +
T Consensus 124 MnGqW---------lG~R~IRTNWATRKp~e~---n~~~ltfdeV--------------------~NQssp~NtsVY--~ 169 (321)
T KOG0148|consen 124 MNGQW---------LGRRTIRTNWATRKPSEM---NGKPLTFDEV--------------------YNQSSPDNTSVY--V 169 (321)
T ss_pred hCCee---------eccceeeccccccCcccc---CCCCccHHHH--------------------hccCCCCCceEE--e
Confidence 99999 899999999999875111 1110000000 000113466666 9
Q ss_pred eCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 251 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 251 ~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
+|+...+||++|++.|++||.|.+|++++.+ |+ |||.|++.|+|.+||..|||..|.|. .+|++|.|...
T Consensus 170 G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-GY-aFVrF~tkEaAahAIv~mNntei~G~---~VkCsWGKe~~ 239 (321)
T KOG0148|consen 170 GNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-GY-AFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWGKEGD 239 (321)
T ss_pred CCcCccccHHHHHHhcccCCcceEEEEeccc-ce-EEEEecchhhHHHHHHHhcCceeCce---EEEEeccccCC
Confidence 9998889999999999999999999999998 54 99999999999999999999999999 99999988764
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.1e-36 Score=309.28 Aligned_cols=289 Identities=18% Similarity=0.283 Sum_probs=206.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.++++|||+|||.++|+++|+++|++||.|.+|+|+. ++++|||||+|.+.++|++||. ++ +..+.|+.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~----g~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LT----GQMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hC----CCEECCeeeE
Confidence 3578999999999999999999999999999999953 5679999999999999999997 45 6689999999
Q ss_pred EeeccccccccCC----ccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHH
Q 013150 91 LQYSNRQEIVNNK----TTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTE 162 (448)
Q Consensus 91 v~~s~~~~~~~~~----~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e 162 (448)
|.++......... ..... .....|+|+||| ..+++++|+++|++||.|..|.+... +.+++|||+|.+.+
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~-p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDI-PNFLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred EeecchhhhhhhhcccccCCCC-CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 9886543322111 01111 124568888997 89999999999999999999988863 44689999999999
Q ss_pred HHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccccccc----ccCCcCCCCCCCC----------------CCCC
Q 013150 163 TASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ----SHRSRDYTNPYLP----------------VAPS 222 (448)
Q Consensus 163 ~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~----~~~~~~~~~~~~~----------------~~~~ 222 (448)
+|.+|++.|||.. +.+++|+|.|+.......... ............. ....
T Consensus 240 ~A~~A~~~l~g~~---------i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (457)
T TIGR01622 240 EAKEALEVMNGFE---------LAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGL 310 (457)
T ss_pred HHHHHHHhcCCcE---------ECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccc
Confidence 9999999999987 779999999976321111000 0000000000000 0000
Q ss_pred ccCcc-------------CCcc--------------ccCCCCC----CCCCCcEEEEEEeCCCccCC----------HHH
Q 013150 223 AIDAS-------------GQLS--------------VGLDGKK----LEPESNVLLASIENMQYAVT----------LDV 261 (448)
Q Consensus 223 ~~~~~-------------~~~~--------------~~~~~~~----~~~~~~~l~v~v~nl~~~vt----------~~~ 261 (448)
..... +... ....... ....+.+|+ +.||....+ .++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--l~n~~~~~~~~~~~~~~~~~~d 388 (457)
T TIGR01622 311 LIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLV--LSNMFDPATEEEPNFDNEILDD 388 (457)
T ss_pred cCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEE--EecCCCCcccccchHHHHHHHH
Confidence 00000 0000 0000000 113456666 778854433 367
Q ss_pred HHHHHhhcCCeeEEEEEcc-CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 262 LHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 262 L~~~F~~fG~I~~v~i~~~-~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
|++.|++||.|++|.+... ..|+ +||+|.+.++|.+|++.|||..+.|+ .|.|.|.....
T Consensus 389 v~~e~~k~G~v~~v~v~~~~~~G~-~fV~F~~~e~A~~A~~~lnGr~f~gr---~i~~~~~~~~~ 449 (457)
T TIGR01622 389 VKEECSKYGGVVHIYVDTKNSAGK-IYLKFSSVDAALAAFQALNGRYFGGK---MITAAFVVNDV 449 (457)
T ss_pred HHHHHHhcCCeeEEEEeCCCCcee-EEEEECCHHHHHHHHHHhcCcccCCe---EEEEEEEcHHH
Confidence 9999999999999999744 4554 99999999999999999999999999 99999986553
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.1e-35 Score=303.21 Aligned_cols=277 Identities=17% Similarity=0.233 Sum_probs=198.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCC------------CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCC
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPF------------GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEP 81 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~f------------G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~ 81 (448)
...+++|||+|||.++|+++|+++|+.| +.|.++.+ .+++|||||+|.+.|+|.+||+ ++ +
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~--~~~kg~afVeF~~~e~A~~Al~-l~----g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI--NKEKNFAFLEFRTVEEATFAMA-LD----S 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE--CCCCCEEEEEeCCHHHHhhhhc-CC----C
Confidence 3457899999999999999999999974 34555554 4669999999999999999995 76 6
Q ss_pred ceeeCcEEEEeeccccccc----c---CC-------------ccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceE
Q 013150 82 AQVRGKTVYLQYSNRQEIV----N---NK-------------TTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVH 141 (448)
Q Consensus 82 ~~~~g~~i~v~~s~~~~~~----~---~~-------------~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~ 141 (448)
+.+.|+.|.|......... . .. ...........|||+||| ..++++.|+++|+.||.|.
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp-~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLP-LYLGEDQIKELLESFGDLK 323 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCee
Confidence 7899999999743221100 0 00 000011223468888997 8999999999999999999
Q ss_pred EEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCC
Q 013150 142 KITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 217 (448)
Q Consensus 142 ~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~ 217 (448)
.+.+++ +.++|+|||+|.+.++|..|++.|||.. ++++.|.|.++............ .. ..+.
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~---------~~~~~l~v~~a~~~~~~~~~~~~--~~-~~~~- 390 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD---------TGDNKLHVQRACVGANQATIDTS--NG-MAPV- 390 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE---------ECCeEEEEEECccCCCCCCcccc--cc-cccc-
Confidence 998876 3467899999999999999999999998 77999999998743211110000 00 0000
Q ss_pred CCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccC----------CHHHHHHHHhhcCCeeEEEEEccC------
Q 013150 218 PVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV----------TLDVLHMVFSAFGPVQKIAMFDKN------ 281 (448)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~v----------t~~~L~~~F~~fG~I~~v~i~~~~------ 281 (448)
........ .........++++|+ +.|+...- ..++|+++|++||.|++|+|.+..
T Consensus 391 ~~~~~~~~-------~~~~~~~~~~s~v~~--l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~ 461 (509)
T TIGR01642 391 TLLAKALS-------QSILQIGGKPTKVVQ--LTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNST 461 (509)
T ss_pred ccccccch-------hhhccccCCCceEEE--eccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcC
Confidence 00000000 000001123467777 77885211 136789999999999999997542
Q ss_pred --CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 282 --GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 282 --~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
.|+ |||+|.+.++|++|++.|||..|.|+ .|.|+|....
T Consensus 462 ~~~G~-~fV~F~~~e~A~~A~~~lnGr~~~gr---~v~~~~~~~~ 502 (509)
T TIGR01642 462 PGVGK-VFLEYADVRSAEKAMEGMNGRKFNDR---VVVAAFYGED 502 (509)
T ss_pred CCcce-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEeCHH
Confidence 244 99999999999999999999999999 9999997654
No 13
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-34 Score=261.17 Aligned_cols=296 Identities=28% Similarity=0.438 Sum_probs=250.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...+|.+|+|++|-..++|.||.+.++.||.|.-|.+. ..+..|.|||++.+.|+.++...-. +.+.+.|+...+.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~--P~~r~alvefedi~~akn~Vnfaa~--n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM--PHKRQALVEFEDIEGAKNCVNFAAD--NQIYIAGQQALFN 102 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEec--cccceeeeeeccccchhhheehhcc--CcccccCchhhcc
Confidence 45679999999999999999999999999999887765 5588999999999999999987663 5889999999999
Q ss_pred eccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhC
Q 013150 93 YSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172 (448)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~ 172 (448)
||+.+.+.+.......++.+|.+.|.|- .+.+|.|.|++++...|+|.+|.|+++ .+-+|.|||++.+.|++|...||
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp-~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNP-QYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecC-ccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcc
Confidence 9999888776655566788999999998 599999999999999999999999997 45689999999999999999999
Q ss_pred CCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCC--C--C--------ccCc-----c-C-C----
Q 013150 173 GRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA--P--S--------AIDA-----S-G-Q---- 229 (448)
Q Consensus 173 g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~--~--------~~~~-----~-~-~---- 229 (448)
|.+|| -++++|+|+|+++.++++..++...+|++.|.+... . + +..+ . | .
T Consensus 181 GADIY-------sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 181 GADIY-------SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred ccccc-------ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 99999 999999999999999999999999999998765321 0 0 0000 0 0 0
Q ss_pred ------cc--------------ccCCCCCCCCCCcEEEEEEeCCC-ccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEE
Q 013150 230 ------LS--------------VGLDGKKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 288 (448)
Q Consensus 230 ------~~--------------~~~~~~~~~~~~~~l~v~v~nl~-~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV 288 (448)
+. .+........+++++.|| +|+ ...+.+.|+.+|+.||+|++|++++.+.|. |.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVy--GLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt-amV 330 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVY--GLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT-AMV 330 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEE--eccccccchhhhhhhhhhcCceeeEEEeecccce-eEE
Confidence 00 001111234578899955 554 357899999999999999999999999886 999
Q ss_pred EcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccc
Q 013150 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327 (448)
Q Consensus 289 ~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~ 327 (448)
++.|..+.++|+..||+..++|+ +|.|.++|...+.
T Consensus 331 emgd~~aver~v~hLnn~~lfG~---kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGG---KLNVCVSKQNFVS 366 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccc---eEEEeeccccccc
Confidence 99999999999999999999999 9999999988644
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.6e-33 Score=284.49 Aligned_cols=168 Identities=14% Similarity=0.193 Sum_probs=141.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
..++|||+|||.++||++|+++|++||.|.+|++. ++++||||||+|.+.++|++||+.++ +..++|+.|+|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln----G~~i~GR~IkV 181 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN----GQMLGGRNIKV 181 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC----CeEEecceeee
Confidence 46889999999999999999999999999999984 56789999999999999999999998 67999999999
Q ss_pred eeccccccccCCc--cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHH
Q 013150 92 QYSNRQEIVNNKT--TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETAS 165 (448)
Q Consensus 92 ~~s~~~~~~~~~~--~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~ 165 (448)
.+........... ..........|||+||+ ..+++++|+++|+.||.|.++.+.+ ++++|+|||+|++.++|.
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp-~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVH-PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccccccccccccccccccccceEEeecCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 8654321111000 00111234568899996 8999999999999999999999886 346789999999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
+|++.||+.+ ++|+.|+|.++..
T Consensus 261 kAI~amNg~e---------lgGr~LrV~kAi~ 283 (612)
T TIGR01645 261 EAIASMNLFD---------LGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHhCCCe---------eCCeEEEEEecCC
Confidence 9999999998 8899999998874
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=264.57 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=138.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC----CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC--cEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG----ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG--KTV 89 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~----~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g--~~i 89 (448)
..-.|||+-||..++|+|||++|++||.|.+|.|+++ .+||||||.|.+.++|.+|+.+++. .+.+-| .+|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn---~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHN---QKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhc---ccccCCCCcce
Confidence 3456999999999999999999999999999999654 4699999999999999999999994 666766 468
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASS 166 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~ 166 (448)
.|+|++...... ....++||+-|. +.++|++++++|++||.|++|.|++ +.++|+|||+|.+.|.|..
T Consensus 110 qvk~Ad~E~er~--------~~e~KLFvg~ls-K~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~ 180 (510)
T KOG0144|consen 110 QVKYADGERERI--------VEERKLFVGMLS-KQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVA 180 (510)
T ss_pred eecccchhhhcc--------ccchhhhhhhcc-ccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHH
Confidence 888876643221 123457788995 9999999999999999999999998 5578999999999999999
Q ss_pred HHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 167 A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
|++.|||..-.+ ....+|.|.|++.+
T Consensus 181 Aika~ng~~tme------Gcs~PLVVkFADtq 206 (510)
T KOG0144|consen 181 AIKALNGTQTME------GCSQPLVVKFADTQ 206 (510)
T ss_pred HHHhhccceeec------cCCCceEEEecccC
Confidence 999999975322 55678999999854
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-31 Score=252.39 Aligned_cols=287 Identities=18% Similarity=0.229 Sum_probs=208.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC----CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG----ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~----~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
.||||++||++++.++|.++|+.+|.|..+.+++. .+|||+||.|.-+||+++|++..+ ...+.|+.|.|.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~----~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETE----QSKFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhh----cCcccceeccccc
Confidence 89999999999999999999999999999888543 468999999999999999999988 5589999999998
Q ss_pred ccccccccCCcc-----------------ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC---CCce
Q 013150 94 SNRQEIVNNKTT-----------------ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT---AGFQ 153 (448)
Q Consensus 94 s~~~~~~~~~~~-----------------~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~---~~~~ 153 (448)
++++........ .........+.|+||| ..+.++.|+.+|+.||.|..|.|.++. -.|+
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLP-f~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLP-FKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCC-cccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 876543220000 0011123456678998 788888999999999999999999833 2378
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccc--------------------cccCCcCCC
Q 013150 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKF--------------------QSHRSRDYT 213 (448)
Q Consensus 154 afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~--------------------~~~~~~~~~ 213 (448)
|||+|....+|..|++.+||.+ +.|++|-|+|+-.++.-... .++...++.
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~---------i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNK---------IDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFD 231 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCce---------ecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccc
Confidence 9999999999999999999999 78999999998755421110 001111110
Q ss_pred CCCCC-----CC--CC----------------ccCccCCccccC------CC--CCCCCCCcEEEEEEeCCCccCCHHHH
Q 013150 214 NPYLP-----VA--PS----------------AIDASGQLSVGL------DG--KKLEPESNVLLASIENMQYAVTLDVL 262 (448)
Q Consensus 214 ~~~~~-----~~--~~----------------~~~~~~~~~~~~------~~--~~~~~~~~~l~v~v~nl~~~vt~~~L 262 (448)
.-... .. .. .......+.... .. ........++| |.||++++|+++|
T Consensus 232 ~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVF--vRNL~fD~tEEel 309 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVF--VRNLPFDTTEEEL 309 (678)
T ss_pred hhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEE--EecCCccccHHHH
Confidence 00000 00 00 000000000000 00 01112236777 9999999999999
Q ss_pred HHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHh-----cC-CccCCCceeEEEEEEeeCC
Q 013150 263 HMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEAL-----EG-HCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 263 ~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~l-----ng-~~l~g~~~~~i~v~~ak~~ 324 (448)
.+.|++||.|..+.|+..+ .| +|||.|.+..+|.+||++- .| ..|.|+ .|+|..|-.+
T Consensus 310 ~~~fskFG~v~ya~iV~~k~T~~skG-tAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR---~Lkv~~Av~R 378 (678)
T KOG0127|consen 310 KEHFSKFGEVKYAIIVKDKDTGHSKG-TAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR---LLKVTLAVTR 378 (678)
T ss_pred HHHHHhhccceeEEEEeccCCCCccc-ceEEEeccHHHHHHHHHhcCccCCCceEEEecc---EEeeeeccch
Confidence 9999999999999885433 45 5999999999999999987 34 567788 9999987543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.8e-30 Score=248.18 Aligned_cols=236 Identities=20% Similarity=0.281 Sum_probs=197.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe--ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKC--NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i--~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.+|||+ +++||..|+++|+++|.|+++++ ..+ +-|||||.|.+.++|++||+.+| -..+.|++|+|.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~t-slgy~yvnf~~~~da~~A~~~~n----~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDAT-SLGYAYVNFQQPADAERALDTMN----FDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCC-ccceEEEecCCHHHHHHHHHHcC----CcccCCcEEEeehhc
Confidence 468999 89999999999999999999998 224 89999999999999999999998 668999999999987
Q ss_pred ccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC--CCceEEEEeCCHHHHHHHHHHhCC
Q 013150 96 RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDG 173 (448)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~--~~~~afVeF~~~e~A~~A~~~l~g 173 (448)
.... .|+|.||+ +.++...|+++|+.||.|++|++..+. ++++ ||+|+++++|.+|++.|||
T Consensus 74 rd~~--------------~~~i~nl~-~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 74 RDPS--------------LVFIKNLD-ESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred cCCc--------------eeeecCCC-cccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcC
Confidence 6531 18899995 999999999999999999999988733 5677 9999999999999999999
Q ss_pred CCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCC
Q 013150 174 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENM 253 (448)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl 253 (448)
.. +.+++|.|.....+...........+. -+.++ +.|+
T Consensus 138 ~l---------l~~kki~vg~~~~~~er~~~~~~~~~~-------------------------------~t~v~--vk~~ 175 (369)
T KOG0123|consen 138 ML---------LNGKKIYVGLFERKEEREAPLGEYKKR-------------------------------FTNVY--VKNL 175 (369)
T ss_pred cc---------cCCCeeEEeeccchhhhcccccchhhh-------------------------------hhhhh--eecc
Confidence 98 789999998766543322111111111 22344 8888
Q ss_pred CccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 254 QYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 254 ~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
..++++++|.+.|+.||.|..+.++.+. +|+ +||+|.+.++|..|++.|||..+.+. .+.|.-+..
T Consensus 176 ~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V~~aqk 245 (369)
T KOG0123|consen 176 EEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDK---ELYVGRAQK 245 (369)
T ss_pred ccccchHHHHHhhcccCcceEEEEeecCCCCCCCc-cceeecChhHHHHHHHhccCCcCCcc---ceeeccccc
Confidence 8999999999999999999999996643 455 99999999999999999999999887 777776655
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4e-30 Score=250.17 Aligned_cols=256 Identities=17% Similarity=0.294 Sum_probs=205.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC--CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecccc
Q 013150 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ 97 (448)
Q Consensus 20 l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~--~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~ 97 (448)
|||+||+.++|.++|.++|+.||+|.+|++.+. -+||| ||+|.++++|++||+.+| +..+.|++|+|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n----g~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN----GMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc----CcccCCCeeEEeeccch
Confidence 999999999999999999999999999999543 27999 999999999999999999 67899999999866555
Q ss_pred ccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHHHhCCC
Q 013150 98 EIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGR 174 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~ 174 (448)
+........ ...+...++|.|++ ..++++.|.++|+.+|.|..+.+++ +++++++||+|++.++|..|++.|++.
T Consensus 154 ~er~~~~~~-~~~~~t~v~vk~~~-~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 154 EEREAPLGE-YKKRFTNVYVKNLE-EDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hhhcccccc-hhhhhhhhheeccc-cccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 443322222 23445567788996 8999999999999999999998887 445688999999999999999999999
Q ss_pred CCCCcCCCCCCCCeEEEEEecCCCccc---ccc--cccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEE
Q 013150 175 SIPRYLLPENMGPCTLRITYSAHTDLS---VKF--QSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 249 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~l~v~~s~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 249 (448)
. ..+..+.|.-+..+... .+. ......+ .......+|+
T Consensus 232 ~---------~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~--------------------------~~~~~~~nl~-- 274 (369)
T KOG0123|consen 232 I---------FGDKELYVGRAQKKSEREAELKRKFEQEFAKR--------------------------SVSLQGANLY-- 274 (369)
T ss_pred c---------CCccceeecccccchhhHHHHhhhhHhhhhhc--------------------------cccccccccc--
Confidence 8 66888888766542110 000 0000000 0012345666
Q ss_pred EeCCCccCCHHHHHHHHhhcCCeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
|.|++..++++.|+++|+.||+|.+++++.. ..|+ +||+|++.++|.+|+..|||..+.++ .|.|.++..
T Consensus 275 vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~-gfV~fs~~eeA~~A~~~~n~~~i~~k---~l~vav~qr 348 (369)
T KOG0123|consen 275 VKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGF-GFVEFSSPEEAKKAMTEMNGRLIGGK---PLYVAVAQR 348 (369)
T ss_pred cccCccccchhHHHHHHhcccceeeEEEEeccCCCccce-EEEEcCCHHHHHHHHHhhChhhhcCC---chhhhHHhh
Confidence 8899999999999999999999999999553 2454 99999999999999999999999999 999988763
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=9.6e-30 Score=246.42 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=141.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
....+++|||+|||.++||++|+++|++||+|++|+|. ++++||||||+|.++++|++||+.++ +..+.+++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln----G~~l~gr~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN----GITVRNKR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC----CCccCCce
Confidence 45567899999999999999999999999999999984 45688999999999999999999998 67899999
Q ss_pred EEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHH
Q 013150 89 VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETA 164 (448)
Q Consensus 89 i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A 164 (448)
|+|.|++..... .....|+|.||| ..+++|+|+++|++||.|+++.++++ +.+++|||+|++.++|
T Consensus 179 i~V~~a~p~~~~---------~~~~~lfV~nLp-~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 179 LKVSYARPGGES---------IKDTNLYVTNLP-RTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred eeeecccccccc---------cccceeEEeCCC-CcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 999998653211 122357888997 89999999999999999999988763 3457899999999999
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 165 ~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
++|++.||+..+. ...++|+|.+++..
T Consensus 249 ~~Ai~~lng~~~~-------g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 249 QEAISALNNVIPE-------GGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHhCCCccC-------CCceeEEEEECCcc
Confidence 9999999999754 45689999998754
No 20
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.97 E-value=2e-30 Score=241.25 Aligned_cols=237 Identities=35% Similarity=0.464 Sum_probs=187.5
Q ss_pred CCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 108 ~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
.+++++++. ||| ..++|++|-+++.+||+|.++.+++++ .+||+||.++++|...+....... .++.+
T Consensus 26 ~pSkV~HlR--nlp-~e~tE~elI~Lg~pFG~vtn~~~lkGk--nQAflem~d~~sAvtmv~~y~~~~-------p~lr~ 93 (492)
T KOG1190|consen 26 EPSKVVHLR--NLP-WEVTEEELISLGLPFGKVTNLLMLKGK--NQAFLEMADEESAVTMVNYYTSVT-------PVLRG 93 (492)
T ss_pred CCcceeEec--cCC-ccccHHHHHHhcccccceeeeeeeccc--hhhhhhhcchhhhhheeecccccC-------ccccC
Confidence 466776655 998 788888888899999999999999976 589999999999999777666544 55999
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCC--CCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHH
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNP--YLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 265 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~ 265 (448)
++|.|+|+....+..+......|..+.- ............+ .+-.......++.+|.+.|.|+-+.|+.|.|+++
T Consensus 94 ~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~---~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 94 QPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSA---SAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred cceeehhhhHHHHhccCchhhhhhhhHHhhhhccccccccccc---ccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 9999999988777655443322221100 0000000000000 0000013445788999999999999999999999
Q ss_pred HhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccccccCCCCCCCCCCCCCCC
Q 013150 266 FSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 345 (448)
Q Consensus 266 F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~~~~~~~~~~~~~~~~~~~ 345 (448)
|++||.|.+|.-+.+++||+|+|+|.+.+.|+.|..+|+|+.|+++ ||+|||+|+|...++++.+++++|||++|.+|.
T Consensus 171 FS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~ 249 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPV 249 (492)
T ss_pred HhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 013150 346 VNSQPSILGQQPVPM 360 (448)
Q Consensus 346 ~~~~~~~~~~~p~~~ 360 (448)
++.+|++....+..+
T Consensus 250 gd~~p~l~~~~~aa~ 264 (492)
T KOG1190|consen 250 GDGQPSLDQLMAAAF 264 (492)
T ss_pred Cccccccchhhhccc
Confidence 999888766555444
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=3.3e-28 Score=235.74 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=137.3
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
..+.|||+||| .++++++|+++|+.||.|++|+|++ .+++++|||+|.++++|++|++.||+.. +.
T Consensus 106 ~~~~LfVgnLp-~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~---------l~ 175 (346)
T TIGR01659 106 SGTNLIVNYLP-QDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT---------VR 175 (346)
T ss_pred CCcEEEEeCCC-CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc---------cC
Confidence 44568888997 8999999999999999999998876 3356899999999999999999999998 77
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
+++|+|.|++..... ...++|| |.||+.++|+++|+++|
T Consensus 176 gr~i~V~~a~p~~~~---------------------------------------~~~~~lf--V~nLp~~vtee~L~~~F 214 (346)
T TIGR01659 176 NKRLKVSYARPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIF 214 (346)
T ss_pred Cceeeeecccccccc---------------------------------------cccceeE--EeCCCCcccHHHHHHHH
Confidence 999999998643210 0144577 89999999999999999
Q ss_pred hhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 267 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 267 ~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
++||.|++++|+.++ +|+ |||+|.+.++|++||+.||+..+.++ ..+|+|.|++..
T Consensus 215 ~~fG~V~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~~~ 275 (346)
T TIGR01659 215 GKYGQIVQKNILRDKLTGTPRGV-AFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAEEH 275 (346)
T ss_pred HhcCCEEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCcc
Confidence 999999999997654 354 99999999999999999999998774 358999998764
No 22
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=226.92 Aligned_cols=216 Identities=32% Similarity=0.452 Sum_probs=183.1
Q ss_pred CCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 109 ~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
++....|+|++|. ..++|.+|-+.++.||.|.-|.++..+ .+|+|||++.+.|..|+..-....|+ +.+.
T Consensus 28 ~~~spvvhvr~l~-~~v~eadl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~-------i~gq 97 (494)
T KOG1456|consen 28 PNPSPVVHVRGLH-QGVVEADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIY-------IAGQ 97 (494)
T ss_pred CCCCceEEEeccc-cccchhHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCccc-------ccCc
Confidence 3445567777995 888999988899999999999998866 57999999999999999988778887 8899
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
...++||..+.+.... ..+..++++|.++|.|.-+.+|.|.|+.+|-.
T Consensus 98 ~Al~NyStsq~i~R~g--------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp 145 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPG--------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNP 145 (494)
T ss_pred hhhcccchhhhhccCC--------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCC
Confidence 9999999766553321 11224589999999999999999999999999
Q ss_pred cCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccccccCCCCCCCCCCCCCCC---
Q 013150 269 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM--- 345 (448)
Q Consensus 269 fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~~~~~~~~~~~~~~~~~~~--- 345 (448)
.|.|++|.|++++ |.+|.|||++.+.|++|.++|||..|+.+ ||+|+|+|||+.++++.+|+..+|||+.|.+++
T Consensus 146 ~GkVlRIvIfkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~ 223 (494)
T KOG1456|consen 146 QGKVLRIVIFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYD 223 (494)
T ss_pred CCceEEEEEEecc-ceeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCCCCC
Confidence 9999999999985 88999999999999999999999999998 999999999999999999999999999998743
Q ss_pred -------CCCCCCCCCCCCCCCCCCCcccC
Q 013150 346 -------VNSQPSILGQQPVPMVGATANQY 368 (448)
Q Consensus 346 -------~~~~~~~~~~~p~~~~~~~~~~~ 368 (448)
..++|.+.+..|..+.|+-++++
T Consensus 224 ~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 224 PGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred CCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 23456667777777766554443
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-28 Score=216.47 Aligned_cols=180 Identities=19% Similarity=0.272 Sum_probs=151.7
Q ss_pred CCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcC
Q 013150 3 SVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASS 78 (448)
Q Consensus 3 ~~~~~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~ 78 (448)
+.+.++|........-.|||+.|...++.++||+.|.+||+|.+++|+ +++||||+||.|.+.++|+.||..|+
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-- 125 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-- 125 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC--
Confidence 344455554443334459999999999999999999999999999994 56899999999999999999999999
Q ss_pred CCCceeeCcEEEEeeccccccccCCc-------cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCC
Q 013150 79 SEPAQVRGKTVYLQYSNRQEIVNNKT-------TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAG 151 (448)
Q Consensus 79 ~~~~~~~g~~i~v~~s~~~~~~~~~~-------~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~ 151 (448)
+..|++|.|+-.|+.++....... -+......+.|||+|+. ..++|++|++.|+.||.|.+|++++.+
T Consensus 126 --GqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~-~~lte~~mr~~Fs~fG~I~EVRvFk~q-- 200 (321)
T KOG0148|consen 126 --GQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIA-SGLTEDLMRQTFSPFGPIQEVRVFKDQ-- 200 (321)
T ss_pred --CeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcC-ccccHHHHHHhcccCCcceEEEEeccc--
Confidence 679999999999998876322111 01223345679999996 789999999999999999999999976
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 152 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 152 ~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
+||||+|++.|+|..||..+||.+ +++..+++.|.+..
T Consensus 201 GYaFVrF~tkEaAahAIv~mNnte---------i~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 201 GYAFVRFETKEAAAHAIVQMNNTE---------IGGQLVRCSWGKEG 238 (321)
T ss_pred ceEEEEecchhhHHHHHHHhcCce---------eCceEEEEeccccC
Confidence 899999999999999999999999 78999999998754
No 24
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=5.5e-27 Score=196.29 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=137.2
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
-.|||+||+ +.++++.||++|-+.|+|.++.+.+ ...+|+|||||.++|||++|++.||+.+ +.|+
T Consensus 10 ~tiyvgnld-~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk---------LYgr 79 (203)
T KOG0131|consen 10 ATLYVGNLD-EKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK---------LYGR 79 (203)
T ss_pred ceEEEecCC-HHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH---------hcCc
Confidence 357788995 9999999999999999999999987 4467899999999999999999999888 5599
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
+|+|+.+.....+. ..+.+|| |+||+.++||..|+++|+.
T Consensus 80 pIrv~kas~~~~nl--------------------------------------~vganlf--vgNLd~~vDe~~L~dtFsa 119 (203)
T KOG0131|consen 80 PIRVNKASAHQKNL--------------------------------------DVGANLF--VGNLDPEVDEKLLYDTFSA 119 (203)
T ss_pred eeEEEecccccccc--------------------------------------ccccccc--ccccCcchhHHHHHHHHHh
Confidence 99999887221111 1257788 9999999999999999999
Q ss_pred cCCeeEE-EEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccc
Q 013150 269 FGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327 (448)
Q Consensus 269 fG~I~~v-~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~ 327 (448)
||.+.+. +|++. .+|+ |||.|++.|.+.+|+..|||+.+.++ +|+|+|++.+..+
T Consensus 120 fG~l~~~P~i~rd~~tg~~~~~-g~i~~~sfeasd~ai~s~ngq~l~nr---~itv~ya~k~~~k 180 (203)
T KOG0131|consen 120 FGVLISPPKIMRDPDTGNPKGF-GFINYASFEASDAAIGSMNGQYLCNR---PITVSYAFKKDTK 180 (203)
T ss_pred ccccccCCcccccccCCCCCCC-eEEechhHHHHHHHHHHhccchhcCC---ceEEEEEEecCCC
Confidence 9998875 55432 3455 99999999999999999999999999 9999999877644
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=229.47 Aligned_cols=258 Identities=20% Similarity=0.307 Sum_probs=199.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
..+.++|+|||..+..++|.++|..||.|..|.+- +..-.|+|+|.+..+|.+|++.+. ...+...++++.|+.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrkla----ysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLA----YSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhc----hhhhccCccccccCh
Confidence 34679999999999999999999999999998553 334569999999999999999987 345555666666543
Q ss_pred cccccc--------------------------------CCc----c-----ccCCCCeEEEEEcCCCCCCCcHHHHHHHh
Q 013150 96 RQEIVN--------------------------------NKT----T-----ADVAGNVLLVTIEGTDARLVSIDVLHLVF 134 (448)
Q Consensus 96 ~~~~~~--------------------------------~~~----~-----~~~~~~~~~v~V~nlp~~~~~~e~l~~~f 134 (448)
...+.. ++. . .........+||.||. ..++.+.|...|
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNln-f~Tt~e~l~~~F 536 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLN-FDTTLEDLEDLF 536 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCC-cccchhHHHHHH
Confidence 322110 000 0 0000111227888995 899999999999
Q ss_pred cccCceEEEEEeccCC-------CceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccccccccc
Q 013150 135 SAFGFVHKITTFEKTA-------GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 207 (448)
Q Consensus 135 ~~~G~v~~v~~~~~~~-------~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~ 207 (448)
++.|.|.++.|..++. .|+|||||.+.++|+.|++.|+|.. +.|+.|.|.++..+..... .
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv---------ldGH~l~lk~S~~k~~~~~---g 604 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV---------LDGHKLELKISENKPASTV---G 604 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce---------ecCceEEEEeccCcccccc---c
Confidence 9999999998877442 3899999999999999999999998 7899999999872211000 0
Q ss_pred CCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----C
Q 013150 208 RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----G 282 (448)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~ 282 (448)
+.. ......+.|+ |.|+|+..+..++++||+.||.|.+|+|..+. +
T Consensus 605 K~~---------------------------~~kk~~tKIl--VRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~r 655 (725)
T KOG0110|consen 605 KKK---------------------------SKKKKGTKIL--VRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHR 655 (725)
T ss_pred ccc---------------------------ccccccceee--eeccchHHHHHHHHHHHhcccceeeeccchhhcchhhc
Confidence 000 0011234566 89999999999999999999999999996652 5
Q ss_pred CeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 283 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 283 g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
|| |||+|-+..+|.+|+++|.++.|+|+ .|.++||+...
T Consensus 656 GF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVLEwA~~d~ 694 (725)
T KOG0110|consen 656 GF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVLEWAKSDN 694 (725)
T ss_pred cc-eeeeccCcHHHHHHHHhhcccceech---hhheehhccch
Confidence 66 99999999999999999999999999 99999998764
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=1e-25 Score=229.35 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=138.0
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~ 185 (448)
...+.|||+||+ ..++++.|+++|++||.|.+|.+.. ++++|+|||+|.+.++|++|++.|||.. +
T Consensus 105 ~~~~rLfVGnLp-~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~---------i 174 (612)
T TIGR01645 105 AIMCRVYVGSIS-FELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---------L 174 (612)
T ss_pred cCCCEEEEcCCC-CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE---------E
Confidence 345678999996 8999999999999999999998875 4567899999999999999999999998 7
Q ss_pred CCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHH
Q 013150 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 265 (448)
Q Consensus 186 ~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~ 265 (448)
+|+.|+|++......... ..+.. .......++|| |+||+.++++++|+++
T Consensus 175 ~GR~IkV~rp~~~p~a~~-----~~~~~-----------------------~~~~~~~~rLf--VgnLp~~vteedLk~l 224 (612)
T TIGR01645 175 GGRNIKVGRPSNMPQAQP-----IIDMV-----------------------QEEAKKFNRIY--VASVHPDLSETDIKSV 224 (612)
T ss_pred ecceeeeccccccccccc-----ccccc-----------------------cccccccceEE--eecCCCCCCHHHHHHH
Confidence 899999985432110000 00000 00011235667 9999999999999999
Q ss_pred HhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 266 FSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 266 F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
|+.||.|+++++.++ ++|| |||+|.+.++|.+||+.|||..|.|+ .|+|.++...
T Consensus 225 Fs~FG~I~svrl~~D~~tgksKGf-GFVeFe~~e~A~kAI~amNg~elgGr---~LrV~kAi~p 284 (612)
T TIGR01645 225 FEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKCVTP 284 (612)
T ss_pred HhhcCCeeEEEEEecCCCCCcCCe-EEEEECCHHHHHHHHHHhCCCeeCCe---EEEEEecCCC
Confidence 999999999999653 3565 99999999999999999999999999 9999988654
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=4.8e-26 Score=231.42 Aligned_cols=225 Identities=20% Similarity=0.266 Sum_probs=164.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEee-----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGK-VVNTKCN-----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~-I~~v~i~-----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++|||+|||.++|+++|+++|++++. ++++.+. +++++|||||+|.++++|.+|++.++. ..+.+.|+.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~--gki~l~Gr~I 214 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP--GRIQLWGHVI 214 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc--cceEecCceE
Confidence 4688999999999999999999999964 4444442 346799999999999999999998763 3567899999
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhccc--CceEEEEEeccCCCceEEEEeCCHHHHHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAF--GFVHKITTFEKTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~--G~v~~v~~~~~~~~~~afVeF~~~e~A~~A 167 (448)
.|.|+..+..... ........|||+||+ ..+++|+|+++|++| |.|++|.+++ ++|||+|++.++|++|
T Consensus 215 ~VdwA~p~~~~d~----~~~~~~k~LfVgNL~-~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 215 AVDWAEPEEEVDE----DVMAKVKILYVRNLM-TTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEeecccccccc----cccccccEEEEeCCC-CCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHH
Confidence 9999877542211 111233457788996 899999999999999 9999998765 5899999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEE
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (448)
++.|||.. +.++.|+|+|++......... ..+....... ........-+....+.+..++
T Consensus 286 i~~lnG~~---------i~Gr~I~V~~Akp~~~~~~~~--~~rg~gg~~~---------~~~~~~~~~g~~~sp~s~~~~ 345 (578)
T TIGR01648 286 MDELNGKE---------LEGSEIEVTLAKPVDKKSYVR--YTRGTGGRGK---------ERQAARQSLGQVYDPASRSLA 345 (578)
T ss_pred HHHhCCCE---------ECCEEEEEEEccCCCcccccc--cccccCCCcc---------cccccccccCcccCccccccc
Confidence 99999998 789999999998653211000 0000000000 000000000111223466788
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCee
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQ 273 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~ 273 (448)
+.|++++.+++.+.++|..+|.|.
T Consensus 346 --~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 346 --YEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred --cccccccccccchhhccccCcccc
Confidence 889999999999999999999754
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=206.78 Aligned_cols=165 Identities=15% Similarity=0.202 Sum_probs=137.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
+.|||+.|...+.|+.||..|..||.|++|.+ .++++||||||||+-.|.|+-|++.|| +..++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMN----g~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN----GQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhc----cccccCccccccC
Confidence 67999999999999999999999999999998 688999999999999999999999999 7799999999974
Q ss_pred ccccccccCCc--cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHH
Q 013150 94 SNRQEIVNNKT--TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 94 s~~~~~~~~~~--~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A 167 (448)
..+-....... -........+|||..+. .+.++++|+.+|+.||+|.+|.+.+ +..+||+|+||.+..+...|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvH-pDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVH-PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecC-CCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 33211100000 00011234458888996 8999999999999999999999987 45678999999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecC
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
+..||-.+ ++|.-|+|..+-
T Consensus 269 iasMNlFD---------LGGQyLRVGk~v 288 (544)
T KOG0124|consen 269 IASMNLFD---------LGGQYLRVGKCV 288 (544)
T ss_pred hhhcchhh---------cccceEeccccc
Confidence 99999766 899999997654
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.5e-26 Score=212.23 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=145.4
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~ 185 (448)
...+++||+-+| ..++|.+|+++|++||.|.+|.+++++ ++++|||.|.+.++|.+|+.+||++.... .
T Consensus 32 ~~~vKlfVgqIp-rt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp------G 104 (510)
T KOG0144|consen 32 GSAVKLFVGQIP-RTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP------G 104 (510)
T ss_pred chhhhheeccCC-ccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC------C
Confidence 567889999997 999999999999999999999999844 56889999999999999999999987653 5
Q ss_pred CCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHH
Q 013150 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 265 (448)
Q Consensus 186 ~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~ 265 (448)
...+|.|.|++.+..++ .....|| |+-|+..+||++++++
T Consensus 105 ~~~pvqvk~Ad~E~er~--------------------------------------~~e~KLF--vg~lsK~~te~evr~i 144 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERI--------------------------------------VEERKLF--VGMLSKQCTENEVREI 144 (510)
T ss_pred CCcceeecccchhhhcc--------------------------------------ccchhhh--hhhccccccHHHHHHH
Confidence 67789999998543221 1245688 8888899999999999
Q ss_pred HhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCcc
Q 013150 266 FSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326 (448)
Q Consensus 266 F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~ 326 (448)
|++||.|+++.|+++. +| ||||+|++.|.|..||++|||..-..+|..+|.|.||+.++-
T Consensus 145 Fs~fG~Ied~~ilrd~~~~sRG-caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 145 FSRFGHIEDCYILRDPDGLSRG-CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHhhCccchhhheecccccccc-eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 9999999999997743 56 699999999999999999999987777677999999987653
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=6.6e-25 Score=217.00 Aligned_cols=161 Identities=16% Similarity=0.270 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
...|+|+||| ..+++++|+++|++||+|.+|.++++ +++|+|||+|.+.++|++|++.|||.. +.+
T Consensus 3 ~~~l~V~nLp-~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~---------l~g 72 (352)
T TIGR01661 3 KTNLIVNYLP-QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR---------LQN 72 (352)
T ss_pred CcEEEEeCCC-CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE---------ECC
Confidence 3468888997 89999999999999999999998763 356899999999999999999999988 789
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHh
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 267 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~ 267 (448)
++|+|.|++..... ...++|| |.||+.++++++|+++|+
T Consensus 73 ~~i~v~~a~~~~~~---------------------------------------~~~~~l~--v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 73 KTIKVSYARPSSDS---------------------------------------IKGANLY--VSGLPKTMTQHELESIFS 111 (352)
T ss_pred eeEEEEeecccccc---------------------------------------cccceEE--ECCccccCCHHHHHHHHh
Confidence 99999998753210 1145577 899999999999999999
Q ss_pred hcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 268 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 268 ~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
+||.|..+++..++ +|+ |||+|++.++|++|++.|||..+.|. ...|+|.|+....
T Consensus 112 ~~G~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~A~~ai~~l~g~~~~g~-~~~i~v~~a~~~~ 172 (352)
T TIGR01661 112 PFGQIITSRILSDNVTGLSKGV-GFIRFDKRDEADRAIKTLNGTTPSGC-TEPITVKFANNPS 172 (352)
T ss_pred ccCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCCCC
Confidence 99999999986542 455 99999999999999999999988774 3489999987654
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.92 E-value=1.3e-24 Score=210.55 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=200.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
-+|||+--|....++.||.++|+.+|+|.+|+++ .+++||.|||||.+.+....||.. . +..+.|.+|.|+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-s----Gqrllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-S----GQRLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-c----CCcccCceeEec
Confidence 4789999999999999999999999999999995 456799999999999999999954 3 568999999998
Q ss_pred eccccccccCCcc-----ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHH
Q 013150 93 YSNRQEIVNNKTT-----ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTET 163 (448)
Q Consensus 93 ~s~~~~~~~~~~~-----~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~ 163 (448)
.+........... .........++|+||+ .+++++.|+.+|+.||.|+.|.+.+ +.+++++|++|.+.++
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLH-fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLH-FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccc-cCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 7655443211110 0111222237899997 8999999999999999999998876 4567899999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC-cccccccccCCcCC-CCCCCCCCCC--------ccCcc------
Q 013150 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT-DLSVKFQSHRSRDY-TNPYLPVAPS--------AIDAS------ 227 (448)
Q Consensus 164 A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~-~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~------ 227 (448)
|.+|++.|||.+ +-|+.|+|..-..+ ............|. ..-.++.... .+++.
T Consensus 333 ar~a~e~lngfe---------lAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s 403 (549)
T KOG0147|consen 333 ARKALEQLNGFE---------LAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPS 403 (549)
T ss_pred HHHHHHHhccce---------ecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccc
Confidence 999999999966 77999998754321 11000000000000 0000000000 00000
Q ss_pred -------------------CCcccc---CC--CCCCCCCCcEEEEEEeCCCccCC----------HHHHHHHHhhcCCee
Q 013150 228 -------------------GQLSVG---LD--GKKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQ 273 (448)
Q Consensus 228 -------------------~~~~~~---~~--~~~~~~~~~~l~v~v~nl~~~vt----------~~~L~~~F~~fG~I~ 273 (448)
+..... +. ...-..++.+|. +.|+-..-| .|++.+.|++||.|.
T Consensus 404 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~ 481 (549)
T KOG0147|consen 404 TAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVC 481 (549)
T ss_pred hhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCee
Confidence 000000 00 000113444555 556642222 256778899999999
Q ss_pred EEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 274 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 274 ~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
.|.+...+-| |.||.|.+.++|..|+.+|||.+|.|+ .|++.|-....
T Consensus 482 hi~vd~ns~g-~VYvrc~s~~~A~~a~~alhgrWF~gr---~Ita~~~~~~~ 529 (549)
T KOG0147|consen 482 HIFVDKNSAG-CVYVRCPSAEAAGTAVKALHGRWFAGR---MITAKYLPLER 529 (549)
T ss_pred EEEEccCCCc-eEEEecCcHHHHHHHHHHHhhhhhccc---eeEEEEeehhh
Confidence 9998777766 599999999999999999999999999 99999965543
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=6.3e-24 Score=177.98 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=138.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
-....||||+||+..++++-|.++|-+.|.|.++.+ ++...+|||||||.++|+|+-|++-++ .+.+.|++|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln----~VkLYgrpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN----MVKLYGRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH----HHHhcCcee
Confidence 345689999999999999999999999999999999 445579999999999999999999999 789999999
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEE-EEec----cCCCceEEEEeCCHHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETA 164 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v-~~~~----~~~~~~afVeF~~~e~A 164 (448)
+|..+....... ...-.++|+|| +..++|..|+++|+.||.+.+. .+++ ++.+++|||.|++.|.+
T Consensus 82 rv~kas~~~~nl--------~vganlfvgNL-d~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 82 RVNKASAHQKNL--------DVGANLFVGNL-DPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred EEEecccccccc--------ccccccccccc-CcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 998665211111 11245789999 5899999999999999998764 4443 45667899999999999
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCc
Q 013150 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 199 (448)
Q Consensus 165 ~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~ 199 (448)
++|+..|||+- +..++++|.|+..++
T Consensus 153 d~ai~s~ngq~---------l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 153 DAAIGSMNGQY---------LCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHhccch---------hcCCceEEEEEEecC
Confidence 99999999997 889999999998664
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=198.99 Aligned_cols=165 Identities=20% Similarity=0.318 Sum_probs=141.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEe-----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGK-VVNTKC-----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~-I~~v~i-----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...+.|||+|||++.+++||++.|++.++ |++|.+ .+.++||||||||.|+..|..|-+.|-. ..+++.|..
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~--g~~klwgn~ 239 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP--GKIKLWGNA 239 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC--CceeecCCc
Confidence 45678999999999999999999999976 556666 4567899999999999999999887763 588999999
Q ss_pred EEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHH
Q 013150 89 VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168 (448)
Q Consensus 89 i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~ 168 (448)
+.|.|+.+++.... +.-+.+-.|||+||+ .++|+|.|+++|++||.|++|+.+++ ||||.|.+.++|.+|+
T Consensus 240 ~tVdWAep~~e~de----d~ms~VKvLYVRNL~-~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm 310 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDE----DTMSKVKVLYVRNLM-ESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAM 310 (506)
T ss_pred ceeeccCcccCCCh----hhhhheeeeeeeccc-hhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHH
Confidence 99999998764321 123455567788997 89999999999999999999988753 8999999999999999
Q ss_pred HHhCCCCCCCcCCCCCCCCeEEEEEecCCCc
Q 013150 169 NALDGRSIPRYLLPENMGPCTLRITYSAHTD 199 (448)
Q Consensus 169 ~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~ 199 (448)
+.+||++ +.|..|.|.++++.+
T Consensus 311 ~~~ngke---------ldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 311 KETNGKE---------LDGSPIEVTLAKPVD 332 (506)
T ss_pred HHhcCce---------ecCceEEEEecCChh
Confidence 9999999 789999999999654
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=7.9e-23 Score=209.20 Aligned_cols=168 Identities=19% Similarity=0.253 Sum_probs=135.6
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
...|||+||| ..++++.|+++|++||.|.+|.++. ++++++|||+|.+.++|.+|+. |+|.. +.+
T Consensus 89 ~~~l~V~nlp-~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~---------~~g 157 (457)
T TIGR01622 89 DRTVFVLQLA-LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM---------LLG 157 (457)
T ss_pred CcEEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE---------ECC
Confidence 3457788997 8999999999999999999999876 3457899999999999999997 89988 779
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHh
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 267 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~ 267 (448)
++|.|.++............ . .....+..++|| |+||+..+|+++|+++|+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~------~---------------------~~~~~p~~~~l~--v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAAT------H---------------------QPGDIPNFLKLY--VGNLHFNITEQELRQIFE 208 (457)
T ss_pred eeeEEeecchhhhhhhhccc------c---------------------cCCCCCCCCEEE--EcCCCCCCCHHHHHHHHH
Confidence 99999887543211100000 0 000012256777 999999999999999999
Q ss_pred hcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 268 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 268 ~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
+||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.|+ +|+|.|++.
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~i~g~---~i~v~~a~~ 265 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGF-GFIQFHDAEEAKEALEVMNGFELAGR---PIKVGYAQD 265 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhcCCcEECCE---EEEEEEccC
Confidence 99999999996533 354 99999999999999999999999998 999999873
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.90 E-value=1.3e-21 Score=183.87 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=124.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhc-CCCceEEEEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGK-PFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~-~fG~I~~v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
.+...|.|||.|||+++.+.||++||+ +.|+|+.|.+ ..+++||+|.|||.++|.++||++.++ ...+.||+
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~ln----k~~~~GR~ 115 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLN----KYEVNGRE 115 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhh----hccccCce
Confidence 445567899999999999999999997 4699999988 467889999999999999999999999 77999999
Q ss_pred EEEeeccccccc------------------------------------------cCCc--c-------------------
Q 013150 89 VYLQYSNRQEIV------------------------------------------NNKT--T------------------- 105 (448)
Q Consensus 89 i~v~~s~~~~~~------------------------------------------~~~~--~------------------- 105 (448)
|.|+-....+.. ++.. +
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 988643221100 0000 0
Q ss_pred ------------cc-CCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHH
Q 013150 106 ------------AD-VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 106 ------------~~-~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~ 169 (448)
.. .+...-.++|.|| +..+..+.|++.|.-.|.|+.|.+-- ..+++.+.++|...-+|..||.
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl-~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANL-DYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeecc-ccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHH
Confidence 00 1112234779999 59999999999999999998885532 4466789999999999999999
Q ss_pred HhCCCC
Q 013150 170 ALDGRS 175 (448)
Q Consensus 170 ~l~g~~ 175 (448)
.|++.-
T Consensus 275 ml~~~g 280 (608)
T KOG4212|consen 275 MLDRQG 280 (608)
T ss_pred hhccCC
Confidence 999765
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.9e-23 Score=181.37 Aligned_cols=160 Identities=17% Similarity=0.266 Sum_probs=136.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
..+.|.-|| ..+|+|+++.+|...|+|++|++++++ +-||+||.|.+++||++|+..|||.. +..+
T Consensus 42 TNLIvNYLP-Q~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr---------LQ~K 111 (360)
T KOG0145|consen 42 TNLIVNYLP-QNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR---------LQNK 111 (360)
T ss_pred ceeeeeecc-cccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee---------eccc
Confidence 345566787 999999999999999999999999854 44679999999999999999999998 7799
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
+|+|+|+++....++ ..+|+ |.+||...|..||+++|++
T Consensus 112 TIKVSyARPSs~~Ik---------------------------------------~aNLY--vSGlPktMtqkelE~iFs~ 150 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIK---------------------------------------DANLY--VSGLPKTMTQKELEQIFSP 150 (360)
T ss_pred eEEEEeccCChhhhc---------------------------------------ccceE--EecCCccchHHHHHHHHHH
Confidence 999999987643322 45677 8899999999999999999
Q ss_pred cCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 269 FGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 269 fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
||.|+..+|+.+ ++|. +||.|+..++|++||..|||+.-.|- ..+|.|.||....
T Consensus 151 fGrIItSRiL~dqvtg~srGV-gFiRFDKr~EAe~AIk~lNG~~P~g~-tepItVKFannPs 210 (360)
T KOG0145|consen 151 FGRIITSRILVDQVTGLSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGC-TEPITVKFANNPS 210 (360)
T ss_pred hhhhhhhhhhhhcccceecce-eEEEecchhHHHHHHHhccCCCCCCC-CCCeEEEecCCcc
Confidence 999988887543 3565 99999999999999999999987663 6799999987653
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.3e-22 Score=210.55 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=133.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...++|||+|||.++|+++|+++|+.||.|..+.++ ++.++|||||+|.+.++|.+||+.|+ +..+.|+.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~----g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN----GKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC----CCEECCeEEE
Confidence 346789999999999999999999999999999884 46689999999999999999999998 6789999999
Q ss_pred EeeccccccccCC--c-------------------cccCCCCeEEEEEcCCCCC--CC-------cHHHHHHHhcccCce
Q 013150 91 LQYSNRQEIVNNK--T-------------------TADVAGNVLLVTIEGTDAR--LV-------SIDVLHLVFSAFGFV 140 (448)
Q Consensus 91 v~~s~~~~~~~~~--~-------------------~~~~~~~~~~v~V~nlp~~--~~-------~~e~l~~~f~~~G~v 140 (448)
|.++......... . ....++++ |+|.|+... .+ ..+.|+++|++||.|
T Consensus 369 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v--~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v 446 (509)
T TIGR01642 369 VQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKV--VQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPL 446 (509)
T ss_pred EEECccCCCCCCccccccccccccccccchhhhccccCCCceE--EEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCe
Confidence 9987543211100 0 00123333 455588421 01 125688999999999
Q ss_pred EEEEEecc-------CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 141 HKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 141 ~~v~~~~~-------~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.+|.|.+. ...|+|||+|.+.++|.+|++.|||.. +.|+.|.|.|....
T Consensus 447 ~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~---------~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 447 INIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK---------FNDRVVVAAFYGED 502 (509)
T ss_pred eEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE---------ECCeEEEEEEeCHH
Confidence 99998763 234789999999999999999999999 78999999997643
No 38
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=2.3e-23 Score=186.51 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=133.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeeccccc
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQE 98 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~~ 98 (448)
.|||+|||..+++.+|+.+|++||+|.+|.|+ |+||||+.++...|+.||..++ +.+|+|..|.|+-++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLh----gYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLH----GYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcc----cceecceEEEEEeccccC
Confidence 58999999999999999999999999999998 8899999999999999999998 789999999999887763
Q ss_pred cccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 013150 99 IVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPR 178 (448)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~ 178 (448)
. ...+++|+||. ..++.++|++.|++||+|.++.|.+ +++||.|+-.++|..|++.|+|.+
T Consensus 76 k-----------~stkl~vgNis-~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~--- 136 (346)
T KOG0109|consen 76 K-----------ASTKLHVGNIS-PTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTE--- 136 (346)
T ss_pred C-----------CccccccCCCC-ccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccc---
Confidence 1 23457888995 8999999999999999999999877 589999999999999999999999
Q ss_pred cCCCCCCCCeEEEEEecCC
Q 013150 179 YLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 179 ~~~~~~~~~~~l~v~~s~~ 197 (448)
+.|++|+|+.+..
T Consensus 137 ------~~gk~m~vq~sts 149 (346)
T KOG0109|consen 137 ------FQGKRMHVQLSTS 149 (346)
T ss_pred ------cccceeeeeeecc
Confidence 7799999998874
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=1.7e-22 Score=181.00 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=134.3
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v 192 (448)
..+||+||| ..+++.+|+.+|++||+|..|.|++ ++|||..++...|+.|+..|||.+ ++|..|+|
T Consensus 3 ~KLFIGNLp-~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYt---------Lhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLP-REATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYT---------LHGVNINV 68 (346)
T ss_pred cchhccCCC-cccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccce---------ecceEEEE
Confidence 457899997 8999999999999999999999988 589999999999999999999999 88999999
Q ss_pred EecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCe
Q 013150 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272 (448)
Q Consensus 193 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I 272 (448)
+.|+.+. ..++.|+ |+|+.+.++.+||++.|++||.|
T Consensus 69 eaSksKs-----------------------------------------k~stkl~--vgNis~tctn~ElRa~fe~ygpv 105 (346)
T KOG0109|consen 69 EASKSKS-----------------------------------------KASTKLH--VGNISPTCTNQELRAKFEKYGPV 105 (346)
T ss_pred EeccccC-----------------------------------------CCccccc--cCCCCccccCHHHhhhhcccCCc
Confidence 9887652 1256688 99999999999999999999999
Q ss_pred eEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 273 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 273 ~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
++++|++ + ++||+|+-.++|..||..|||+.+.|+ +++|+++..+
T Consensus 106 iecdivk---d-y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~stsr 150 (346)
T KOG0109|consen 106 IECDIVK---D-YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLSTSR 150 (346)
T ss_pred eeeeeec---c-eeEEEEeeccchHHHHhcccccccccc---eeeeeeeccc
Confidence 9999986 3 599999999999999999999999999 9999987543
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.2e-20 Score=165.38 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCc
Q 013150 238 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312 (448)
Q Consensus 238 ~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~ 312 (448)
...+.+|+|| |-+||.+..+.||.+.|-+||.|++.|++-++ +.| +||.|++..+|++||.+|||+.|+=+
T Consensus 280 reGPeGCNlF--IYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF-GFVSfDNp~SaQaAIqAMNGFQIGMK- 355 (371)
T KOG0146|consen 280 REGPEGCNLF--IYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF-GFVSFDNPASAQAAIQAMNGFQIGMK- 355 (371)
T ss_pred hcCCCcceEE--EEeCchhhccHHHHHHhccccceeeeeeeehhccccccce-eeEecCCchhHHHHHHHhcchhhhhh-
Confidence 3467899999 67999999999999999999999999996543 445 99999999999999999999999998
Q ss_pred eeEEEEEEeeCCcc
Q 013150 313 FCKLHISYSRHTDL 326 (448)
Q Consensus 313 ~~~i~v~~ak~~~~ 326 (448)
+|+|.+.++++.
T Consensus 356 --RLKVQLKRPkda 367 (371)
T KOG0146|consen 356 --RLKVQLKRPKDA 367 (371)
T ss_pred --hhhhhhcCcccc
Confidence 999998777653
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.2e-20 Score=177.72 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=139.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
..|||++|| ..++.+.|.++|+.+|.|..+.+.. +..+|++||+|.-.||+++|++.+++.. ++|+
T Consensus 6 ~TlfV~~lp-~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k---------f~Gr 75 (678)
T KOG0127|consen 6 ATLFVSRLP-FSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK---------FEGR 75 (678)
T ss_pred ceEEEecCC-CccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc---------ccce
Confidence 567788997 8999999999999999999998877 2356889999999999999999999988 8899
Q ss_pred EEEEEecCCCcccc--cccccC--CcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHH
Q 013150 189 TLRITYSAHTDLSV--KFQSHR--SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHM 264 (448)
Q Consensus 189 ~l~v~~s~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~ 264 (448)
.|+|..+.++.... .....+ ...+..+.. ...-...+...|. |.|||..+..++|..
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~-----------------~k~~v~~~k~rLI--IRNLPf~~k~~dLk~ 136 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRP-----------------TKAKVDLPKWRLI--IRNLPFKCKKPDLKN 136 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCc-----------------chhhccCccceEE--eecCCcccCcHHHHH
Confidence 99999988543221 100000 000000000 0000011244566 999999999999999
Q ss_pred HHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 265 VFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 265 ~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
+|+.||.|++|.|.++. .|| |||+|.+..+|..|++.+||..|.|+ +|-|.||-.+
T Consensus 137 vFs~~G~V~Ei~IP~k~dgklcGF-aFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVDWAV~K 196 (678)
T KOG0127|consen 137 VFSNFGKVVEIVIPRKKDGKLCGF-AFVQFKEKKDAEKALEFFNGNKIDGR---PVAVDWAVDK 196 (678)
T ss_pred HHhhcceEEEEEcccCCCCCccce-EEEEEeeHHHHHHHHHhccCceecCc---eeEEeeeccc
Confidence 99999999999997654 356 99999999999999999999999999 9999999554
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.84 E-value=4.1e-20 Score=184.09 Aligned_cols=266 Identities=20% Similarity=0.278 Sum_probs=179.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.+..|||+|||+.+||+||+.+| |||+|-..+.|.+|...++ +..+.|+.|.|--++
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-------------------a~v~~~~~~~avka~~~~D----~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-------------------AFVTFMFPEHAVKAYSELD----GKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-------------------HHHhhhhhHHHHhhhhhcc----ccccccceeeecCcc
Confidence 46779999999999999999999 8888888888888888887 456777776653222
Q ss_pred ccc------------------cccCC------------------------------c---------c-------------
Q 013150 96 RQE------------------IVNNK------------------------------T---------T------------- 105 (448)
Q Consensus 96 ~~~------------------~~~~~------------------------------~---------~------------- 105 (448)
.+. +.+.. . +
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 111 00000 0 0
Q ss_pred -------cc---------CCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHH
Q 013150 106 -------AD---------VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 106 -------~~---------~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~ 169 (448)
.. .......|.|+||| ..+..+.|..+|..||.|.+|.+.+ .+..++|+|.+..+|..|++
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlp-a~t~~~elt~~F~~fG~i~rvllp~--~G~~aiv~fl~p~eAr~Afr 439 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLP-AGTLSEELTEAFLRFGEIGRVLLPP--GGTGAIVEFLNPLEARKAFR 439 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCc-cccccHHHHHHhhcccccceeecCc--ccceeeeeecCccchHHHHH
Confidence 00 00112457788997 7888999999999999999996663 34459999999999999999
Q ss_pred HhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccc-----cCCcC-CCCCCCCCC--CCccC-ccCCccccCC--CCC
Q 013150 170 ALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQS-----HRSRD-YTNPYLPVA--PSAID-ASGQLSVGLD--GKK 238 (448)
Q Consensus 170 ~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~-----~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~--~~~ 238 (448)
.|.... +...++++.|+...-....... ...-. ..++..... ...+. .......... ...
T Consensus 440 klaysr---------~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~ 510 (725)
T KOG0110|consen 440 KLAYSR---------FKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAE 510 (725)
T ss_pred Hhchhh---------hccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhh
Confidence 999887 6688888888765433211000 00000 000000000 00000 0000000000 000
Q ss_pred CCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--------CCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--------~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
.....+.|| +.||.++.|.++|..+|+++|.|+++.|..++ .|| |||+|.+.++|++|++.|+|..|.|
T Consensus 511 ~~~~~t~lf--vkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 511 DEETETKLF--VKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred ccccchhhh--hhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecC
Confidence 011122366 88999999999999999999999999884433 166 9999999999999999999999999
Q ss_pred CceeEEEEEEee
Q 013150 311 GGFCKLHISYSR 322 (448)
Q Consensus 311 ~~~~~i~v~~ak 322 (448)
. .|.|+++.
T Consensus 588 H---~l~lk~S~ 596 (725)
T KOG0110|consen 588 H---KLELKISE 596 (725)
T ss_pred c---eEEEEecc
Confidence 9 99999987
No 43
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=2.1e-19 Score=157.06 Aligned_cols=194 Identities=22% Similarity=0.334 Sum_probs=140.8
Q ss_pred EEEEcCCCCCCCcHHHHHH----HhcccCceEEEEEec-cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 114 LVTIEGTDARLVSIDVLHL----VFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~----~f~~~G~v~~v~~~~-~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
.|||.||. +.+..++|+. +|++||.|.+|..++ .+-+|+|||.|.+.+.|..|++.|+|.. +-|+
T Consensus 11 TlYInnLn-ekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfp---------FygK 80 (221)
T KOG4206|consen 11 TLYINNLN-EKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFP---------FYGK 80 (221)
T ss_pred eEeehhcc-ccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCc---------ccCc
Confidence 56677995 8899888776 999999999999886 5567899999999999999999999998 5599
Q ss_pred EEEEEecCCCcccccc-c----ccCCcCCCC-CCCCCCCCccCc----cCCccccCCC-CCCCCCCcEEEEEEeCCCccC
Q 013150 189 TLRITYSAHTDLSVKF-Q----SHRSRDYTN-PYLPVAPSAIDA----SGQLSVGLDG-KKLEPESNVLLASIENMQYAV 257 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~-~----~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~v~v~nl~~~v 257 (448)
+|+|+||+.+.-.+.. . ....+.... ...........+ .....+.+.. ....+++.+|| +.|||.++
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf--~~niP~es 158 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILF--LTNIPSES 158 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEE--EecCCcch
Confidence 9999999855322211 1 000000000 000000000000 0001111111 22346678888 88999999
Q ss_pred CHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 258 t~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
+.+.|..+|+.|....+|+++....+. |||+|.+...|..|.+.|+|..|--+ .+++|.|++
T Consensus 159 ~~e~l~~lf~qf~g~keir~i~~~~~i-Afve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ESEMLSDLFEQFPGFKEIRLIPPRSGI-AFVEFLSDRQASAAQQALQGFKITKK--NTMQITFAK 220 (221)
T ss_pred hHHHHHHHHhhCcccceeEeccCCCce-eEEecchhhhhHHHhhhhccceeccC--ceEEecccC
Confidence 999999999999999999998877776 99999999999999999999998732 399999876
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.83 E-value=4.2e-18 Score=163.49 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=178.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe--ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC--NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i--~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
......|-+++||+++|++||.++|+.++ |+++++ .+||..|-|||||.++|++++|++... ..+..|.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR-----~~mg~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDR-----ESMGHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhH-----HHhCCceEEE
Confidence 34467799999999999999999999975 466665 457889999999999999999999854 4788899999
Q ss_pred eeccccccccCCccccCC--CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEE-EEEec---cCCCceEEEEeCCHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVA--GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETAS 165 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~--~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~-v~~~~---~~~~~~afVeF~~~e~A~ 165 (448)
--+...+........... ...-.|.+++|| ..+++++|.++|+-.-.|.+ |.++. .+..+.|||+|++.+.|+
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLP-fscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLP-FSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAE 159 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCC-ccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHH
Confidence 877665533211111111 134456677998 89999999999998777766 32332 345677999999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccccccccc---CC--c------------CCCCCC---C--------
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH---RS--R------------DYTNPY---L-------- 217 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~---~~--~------------~~~~~~---~-------- 217 (448)
.|+..-+-+ ++.+-|.|-.|...+++...... .. . ++.... .
T Consensus 160 ~Al~rhre~----------iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~ 229 (510)
T KOG4211|consen 160 IALGRHREN----------IGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAG 229 (510)
T ss_pred HHHHHHHHh----------hccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccc
Confidence 999855432 77888888766644332211000 00 0 000000 0
Q ss_pred -----CCCCC--ccC--ccCC------ccc----cC-C----CCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCee
Q 013150 218 -----PVAPS--AID--ASGQ------LSV----GL-D----GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 273 (448)
Q Consensus 218 -----~~~~~--~~~--~~~~------~~~----~~-~----~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~ 273 (448)
..... ... ..+. ... ++ . +......+...||....||+..++.++.+.|+..-.+
T Consensus 230 ~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~- 308 (510)
T KOG4211|consen 230 GEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY- 308 (510)
T ss_pred cCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-
Confidence 00000 000 0000 000 00 0 0000111222788899999999999999999987554
Q ss_pred EEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 274 KIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 274 ~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
+|.|--.. .| -|+|+|.|.++|..|+. -++..+..+
T Consensus 309 ~v~i~ig~dGr~TG-EAdveF~t~edav~Ams-kd~anm~hr 348 (510)
T KOG4211|consen 309 RVHIEIGPDGRATG-EADVEFATGEDAVGAMG-KDGANMGHR 348 (510)
T ss_pred eEEEEeCCCCccCC-cceeecccchhhHhhhc-cCCcccCcc
Confidence 66662221 34 49999999999999986 344444443
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=150.74 Aligned_cols=167 Identities=23% Similarity=0.306 Sum_probs=137.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHH----hhcCCCceEEEEee-cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIE----LGKPFGKVVNTKCN-VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~----~F~~fG~I~~v~i~-~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
..++.||||.||...+..++|+. +|++||+|.+|... +.+.||.|||.|.+.+.|..|+..++ +..+.|+.
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~----gfpFygK~ 81 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQ----GFPFYGKP 81 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhc----CCcccCch
Confidence 44566999999999999999998 99999999999885 56789999999999999999999998 77899999
Q ss_pred EEEeeccccccccCC---------------------c----------------------cccCCCCeEEEEEcCCCCCCC
Q 013150 89 VYLQYSNRQEIVNNK---------------------T----------------------TADVAGNVLLVTIEGTDARLV 125 (448)
Q Consensus 89 i~v~~s~~~~~~~~~---------------------~----------------------~~~~~~~~~~v~V~nlp~~~~ 125 (448)
++|+|++.+.....+ . ....++.+ +++.||| ..+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i--lf~~niP-~es 158 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI--LFLTNIP-SES 158 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE--EEEecCC-cch
Confidence 999998764321000 0 00122334 4555997 889
Q ss_pred cHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecC
Q 013150 126 SIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 126 ~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
+.+.|..+|++|.-...|+++...+ +.|||+|.+...|..|...|+|-.|. - ..+|.|.|++
T Consensus 159 ~~e~l~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it-------~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 ESEMLSDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT-------K-KNTMQITFAK 220 (221)
T ss_pred hHHHHHHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec-------c-CceEEecccC
Confidence 9999999999999999998888543 57999999999999999999998864 2 7788888765
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.7e-17 Score=139.41 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=126.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC-CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA-NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~-~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...+++|||+|||.++-|+||.++|.+||.|.+|.+.... --+||||||++..+|+.||.--+ +..++|..|.|+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRd----GYdydg~rLRVE 78 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRD----GYDYDGCRLRVE 78 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccc----ccccCcceEEEE
Confidence 3468999999999999999999999999999999884332 25899999999999999999776 778999999999
Q ss_pred eccccccccCC---c------------cccCC--CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEE
Q 013150 93 YSNRQEIVNNK---T------------TADVA--GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQAL 155 (448)
Q Consensus 93 ~s~~~~~~~~~---~------------~~~~~--~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~af 155 (448)
|...-....+. . ..-.+ .....|.|.+|| ..-++.+|++-+.+.|.|.-..+.++ +.+.
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp-~SgSWQDLKDHmReaGdvCfadv~rD---g~Gv 154 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLP-PSGSWQDLKDHMREAGDVCFADVQRD---GVGV 154 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCC-CCCchHHHHHHHHhhCCeeeeeeecc---ccee
Confidence 87543211000 0 00011 234567888998 89999999999999999988887775 4799
Q ss_pred EEeCCHHHHHHHHHHhCCCCCC
Q 013150 156 VQFSDTETASSAKNALDGRSIP 177 (448)
Q Consensus 156 VeF~~~e~A~~A~~~l~g~~~~ 177 (448)
|+|...||...|+..|....+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeeehhhHHHHHHhhcccccc
Confidence 9999999999999999988754
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.6e-18 Score=159.75 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=131.6
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
-.++|||+.+ ...+.||.|+..|..||+|.+|.+.. .+.+++|||||+-.|.|+.|++.|||.. ++
T Consensus 112 iMcRvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~m---------lG 181 (544)
T KOG0124|consen 112 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM---------LG 181 (544)
T ss_pred HhHheeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccc---------cc
Confidence 3567999999 58999999999999999999998754 5677899999999999999999999998 89
Q ss_pred CeEEEEEecCC-Cc--ccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHH
Q 013150 187 PCTLRITYSAH-TD--LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 263 (448)
Q Consensus 187 ~~~l~v~~s~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~ 263 (448)
||.|+|..-.. .. -.++.-... ..+-..|||..+..+.+|++|+
T Consensus 182 GRNiKVgrPsNmpQAQpiID~vqee---------------------------------Ak~fnRiYVaSvHpDLSe~DiK 228 (544)
T KOG0124|consen 182 GRNIKVGRPSNMPQAQPIIDMVQEE---------------------------------AKKFNRIYVASVHPDLSETDIK 228 (544)
T ss_pred CccccccCCCCCcccchHHHHHHHH---------------------------------HHhhheEEeeecCCCccHHHHH
Confidence 99999973221 00 000000000 1122335588888999999999
Q ss_pred HHHhhcCCeeEEEEEc-----cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 264 MVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 264 ~~F~~fG~I~~v~i~~-----~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
.+|+.||+|+++++-+ +.+|| +|++|.+..+-..||..||=+.|+|. -|||--+
T Consensus 229 SVFEAFG~I~~C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVGk~ 287 (544)
T KOG0124|consen 229 SVFEAFGEIVKCQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKC 287 (544)
T ss_pred HHHHhhcceeeEEeeccCCCCCccce-eeEEeccccchHHHhhhcchhhcccc---eEecccc
Confidence 9999999999999943 34676 99999999999999999999999998 8887654
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.72 E-value=1.6e-17 Score=156.38 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=137.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.++.|||++|++++||+.|++.|+.||+|.++++. +++++||+||+|.+.+...++|..- ...|.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-----~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-----THKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-----ccccCCccccc
Confidence 78899999999999999999999999999999994 4678999999999999999998864 34799999988
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A 167 (448)
.-+..++....... ..++..|+|++|+ ..++++++++.|++||.|..+.++. .+.++++||+|+++++.+++
T Consensus 80 k~av~r~~~~~~~~---~~~tkkiFvGG~~-~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 80 KRAVSREDQTKVGR---HLRTKKIFVGGLP-PDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred eeccCccccccccc---ccceeEEEecCcC-CCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 76666553332211 2267789999996 8999999999999999998886654 34567899999999999887
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecCCCccc
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 201 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~ 201 (448)
+. ..-+. +.++.+.|..|.+++..
T Consensus 156 ~~-~~f~~---------~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 156 TL-QKFHD---------FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cc-cceee---------ecCceeeEeeccchhhc
Confidence 66 44444 77899999988877643
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.3e-16 Score=157.50 Aligned_cols=273 Identities=17% Similarity=0.257 Sum_probs=189.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCC-----------C-ceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPF-----------G-KVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~f-----------G-~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
..+.++|+++|..++|+..-.+|..- | .+..+.+. ..++|||++|.+.++|..|+... .+.
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n--~~~nfa~ie~~s~~~at~~~~~~-----~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN--LEKNFAFIEFRSISEATEAMALD-----GII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec--ccccceeEEecCCCchhhhhccc-----chh
Confidence 45779999999999999999988743 2 25555543 55899999999999999998764 456
Q ss_pred eeCcEEEEeeccccc----c----------ccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec--
Q 013150 84 VRGKTVYLQYSNRQE----I----------VNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE-- 147 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~----~----------~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~-- 147 (448)
+.|+.+++.--.... + ...............++|++|| ..++++.+.++.+.||.+....++.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp-~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLP-LYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCc-CccCHHHHHHHHHhcccchhheeeccc
Confidence 777777654211100 0 0011112233455668899997 8999999999999999998877766
Q ss_pred --cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccC
Q 013150 148 --KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID 225 (448)
Q Consensus 148 --~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (448)
..++++||.||.+......|+..|||.. +++++|.|+.+............. ....-+.+...
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~---------lgd~~lvvq~A~~g~~~~~~~~~~-~~~~~~~i~~~----- 390 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ---------LGDKKLVVQRAIVGASNANVNFNI-SQSQVPGIPLL----- 390 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhh---------hcCceeEeehhhccchhccccCCc-cccccccchhh-----
Confidence 3577899999999999999999999999 789999999887543322211110 00000000000
Q ss_pred ccCCccccCCCCCCCCCCcEEEEEEeCCC--ccC-CH-------HHHHHHHhhcCCeeEEEEEcc-C------CCeEEEE
Q 013150 226 ASGQLSVGLDGKKLEPESNVLLASIENMQ--YAV-TL-------DVLHMVFSAFGPVQKIAMFDK-N------GGLQALI 288 (448)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~v~v~nl~--~~v-t~-------~~L~~~F~~fG~I~~v~i~~~-~------~g~~afV 288 (448)
.-.....++.+|+ ..|+- .+. ++ |+++..|++||.|.+|.|-+. . +-++.||
T Consensus 391 ---------~~q~~g~~t~Vl~--L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFV 459 (500)
T KOG0120|consen 391 ---------MTQMAGIPTEVLC--LTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFV 459 (500)
T ss_pred ---------hcccCCCcchhhh--hhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEE
Confidence 0011223466666 44541 111 11 345567899999999999554 1 1135899
Q ss_pred EcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 289 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 289 ~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
+|.+.+++++|+++|+|+++.|+ +|..+|-...+
T Consensus 460 efas~ed~qrA~~~L~GrKF~nR---tVvtsYydeDk 493 (500)
T KOG0120|consen 460 EFADTEDSQRAMEELTGRKFANR---TVVASYYDEDK 493 (500)
T ss_pred EecChHHHHHHHHHccCceeCCc---EEEEEecCHHH
Confidence 99999999999999999999999 88888865543
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=131.54 Aligned_cols=195 Identities=20% Similarity=0.202 Sum_probs=127.0
Q ss_pred cCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEe-ccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCC
Q 013150 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF-EKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLL 181 (448)
Q Consensus 107 ~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~-~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~ 181 (448)
+.+..+..+||.+|| .++...+|+.+|..|---+...+. ..+ .+..|||.|.+..+|..|+++|||..+..
T Consensus 29 ~~~~~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp--- 104 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP--- 104 (284)
T ss_pred ccccccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc---
Confidence 345567778888998 899999999999987544444332 222 22569999999999999999999998653
Q ss_pred CCCCCCeEEEEEecCCCcccccccccCC----------------c----CCC-----CCCCCCCCCccC---c-------
Q 013150 182 PENMGPCTLRITYSAHTDLSVKFQSHRS----------------R----DYT-----NPYLPVAPSAID---A------- 226 (448)
Q Consensus 182 ~~~~~~~~l~v~~s~~~~~~~~~~~~~~----------------~----~~~-----~~~~~~~~~~~~---~------- 226 (448)
-.+..|+|++++......+...... + +.+ +|.......... .
T Consensus 105 ---E~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~ 181 (284)
T KOG1457|consen 105 ---ETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSE 181 (284)
T ss_pred ---ccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchh
Confidence 4577899998874321111000000 0 000 000000000000 0
Q ss_pred --cCCccccC----------CCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHH
Q 013150 227 --SGQLSVGL----------DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 294 (448)
Q Consensus 227 --~~~~~~~~----------~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e 294 (448)
.....+.+ ..........+|| |.||..++|||+|+.+|+.|-.+..++|..+.+-..|||+|++.+
T Consensus 182 ~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlf--ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~ 259 (284)
T KOG1457|consen 182 ALSAPDSKAPSANAHLEKSSQGGSGARACSTLF--IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIE 259 (284)
T ss_pred hhhhhhhcCCcccchhhhhhcccccchhhhhHh--hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHH
Confidence 00000000 0011122345788 899999999999999999999998888876664456999999999
Q ss_pred HHHHHHHHhcCCccCC
Q 013150 295 TAVVAKEALEGHCIYD 310 (448)
Q Consensus 295 ~A~~Ai~~lng~~l~g 310 (448)
.|..|+..|+|..|..
T Consensus 260 ~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 260 QATDAMNHLQGNLLSS 275 (284)
T ss_pred HHHHHHHHhhcceecc
Confidence 9999999999987754
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=3.8e-16 Score=132.91 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
...+++|||+|||.++||++|+++|++||.|.+|++. ++++||||||+|.+.|+|++||+.++ +..|+|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln----g~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD----GKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC----CCEECCEEE
Confidence 3457889999999999999999999999999999985 45689999999999999999999998 668999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
+|+++..+.
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999987544
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.66 E-value=5.9e-16 Score=150.77 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=123.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 20 LHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 20 l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
|||+||..++||++|+.+|+.||.|..|.+ .+|++|||+||+|.+.++|++|+..+| ++.|.|+.|+|..-.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln----gfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLN----GFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhc----cceecCceEEEEEee
Confidence 999999999999999999999999999888 378899999999999999999999999 689999999886422
Q ss_pred cccccc---------C-------------------------C----------------c------c------cc------
Q 013150 96 RQEIVN---------N-------------------------K----------------T------T------AD------ 107 (448)
Q Consensus 96 ~~~~~~---------~-------------------------~----------------~------~------~~------ 107 (448)
.+.... + . . . ..
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 110000 0 0 0 0 00
Q ss_pred ----CCCCeEEEEEcCCCC----------CCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCC
Q 013150 108 ----VAGNVLLVTIEGTDA----------RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 173 (448)
Q Consensus 108 ----~~~~~~~v~V~nlp~----------~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g 173 (448)
.++..+ .+.|+=+ ..+. |++.+-|++||.|.+|.+.++.. |+.||.|.+.+.|..|+++|||
T Consensus 437 p~~~i~t~C~--lL~nMFdpstete~n~d~eI~-edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 437 PAFDIPTQCL--LLSNMFDPSTETEPNWDQEIR-EDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred cccCCccHHH--HHhhcCCcccccCcchhhHHH-HHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhh
Confidence 111112 2335511 1122 23445679999999999887655 7899999999999999999999
Q ss_pred CCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 174 RSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.. +.++.|.+.|-...
T Consensus 513 rW---------F~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 513 RW---------FAGRMITAKYLPLE 528 (549)
T ss_pred hh---------hccceeEEEEeehh
Confidence 99 78999999987643
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.9e-14 Score=121.27 Aligned_cols=171 Identities=16% Similarity=0.205 Sum_probs=125.9
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC-CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeE
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT-AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~-~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~ 189 (448)
..+.|+|+||| ..+.+.+|++||.+||.|..|.+.... .-.+|||||++..||+.||.--+|.. +.++.
T Consensus 5 ~~~~iyvGNLP-~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYd---------ydg~r 74 (241)
T KOG0105|consen 5 NSRRIYVGNLP-GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYD---------YDGCR 74 (241)
T ss_pred ccceEEecCCC-cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccc---------cCcce
Confidence 45678999998 899999999999999999999775532 24689999999999999999989888 88999
Q ss_pred EEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCC-CCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP-ESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 190 l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
|+|+|.....-..+ ....+ .+.|....+..+....+ -.....|.|..||.+-+.++|++...+
T Consensus 75 LRVEfprggr~s~~----~~G~y------------~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe 138 (241)
T KOG0105|consen 75 LRVEFPRGGRSSSD----RRGSY------------SGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE 138 (241)
T ss_pred EEEEeccCCCcccc----ccccc------------CCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh
Confidence 99999874421100 00000 00000011111111111 123344558999999999999999999
Q ss_pred cCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 269 FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 269 fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
-|.|--..+.++. .+.|+|-..|+-+.|+..|+.+.+..
T Consensus 139 aGdvCfadv~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 139 AGDVCFADVQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred hCCeeeeeeeccc---ceeeeeeehhhHHHHHHhhccccccC
Confidence 9999888887664 49999999999999999999887654
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.61 E-value=4.2e-14 Score=130.36 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=128.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVN--------TKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--------v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
...|||.|||.++|.+++.++|++||.|.. |++ ..|.-||=|.+.|...|++.-|++.|+ ...++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD----e~~~r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD----EDELR 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC----ccccc
Confidence 455999999999999999999999999843 555 346678999999999999999999999 56888
Q ss_pred CcEEEEeecccccccc-----------------------------CCccccCCCCeEEEEEcCCCCC----CCcHH----
Q 013150 86 GKTVYLQYSNRQEIVN-----------------------------NKTTADVAGNVLLVTIEGTDAR----LVSID---- 128 (448)
Q Consensus 86 g~~i~v~~s~~~~~~~-----------------------------~~~~~~~~~~~~~v~V~nlp~~----~~~~e---- 128 (448)
|+.|+|+.++.+.... +............|.++|+ .. ..+.+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~-Ftp~~~~~~~~l~~d 288 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNM-FTPEDFEKNPDLLND 288 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeec-CCHHHhccCHHHHHH
Confidence 9999998665322100 0000011122344566687 32 23333
Q ss_pred ---HHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 129 ---VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 129 ---~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
.|.+-+++||.|.+|++..++..|.+-|.|.+.++|..||+.|+|+. +.+++|..+....
T Consensus 289 lkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~---------fdgRql~A~i~DG 351 (382)
T KOG1548|consen 289 LKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW---------FDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee---------ecceEEEEEEeCC
Confidence 34455899999999999998888899999999999999999999998 7899998876653
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.58 E-value=3.8e-14 Score=122.95 Aligned_cols=156 Identities=17% Similarity=0.212 Sum_probs=114.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe-ecCCC----cceEEEEecCHHHHHHHHHHhhcCCCCceee---CcE
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-NVGAN----RNQAFIEFADLNQAIAMISYYASSSEPAQVR---GKT 88 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i-~~~~~----kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~---g~~ 88 (448)
=|||||.+||.|+...||..||..|---+...+ .+++. +-+|||.|.+..+|..|++.+| ++.++ +..
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN----GvrFDpE~~st 109 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN----GVRFDPETGST 109 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc----CeeeccccCce
Confidence 489999999999999999999999933333333 33333 3799999999999999999999 56665 566
Q ss_pred EEEeecccccccc----CC-------------------cc----------------------------------------
Q 013150 89 VYLQYSNRQEIVN----NK-------------------TT---------------------------------------- 105 (448)
Q Consensus 89 i~v~~s~~~~~~~----~~-------------------~~---------------------------------------- 105 (448)
|.|++++...... .. ..
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 7777754321100 00 00
Q ss_pred --------------ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHh
Q 013150 106 --------------ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 171 (448)
Q Consensus 106 --------------~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l 171 (448)
....+-.-.+||.|| ..+++||+|+.+|+.|--...++|..+.....|||+|++.+.|..|+..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHh
Confidence 000011234778899 59999999999999998776666655544456999999999999999999
Q ss_pred CCCCCC
Q 013150 172 DGRSIP 177 (448)
Q Consensus 172 ~g~~~~ 177 (448)
+|..|.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 998653
No 56
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.4e-15 Score=132.27 Aligned_cols=156 Identities=18% Similarity=0.251 Sum_probs=124.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecccc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ 97 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~ 97 (448)
..|||++||+.+.++||..+|..||.|.++.+. .||+||+|.+..+|..||..++ +..+.|..+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~----~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLD----GKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhc----Cceecceeeeeeccccc
Confidence 358999999999999999999999999998875 5789999999999999999998 56788877888887743
Q ss_pred ccccCC----------ccccCC-CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHH
Q 013150 98 EIVNNK----------TTADVA-GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASS 166 (448)
Q Consensus 98 ~~~~~~----------~~~~~~-~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~ 166 (448)
...... ..-..+ ...+.+.|.|+. ..+.+..|.+.|+++|.+..... ..+.+||+|++.+||.+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~-~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLS-LRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccch-hhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhh
Confidence 211100 000111 223446677885 78889999999999999955544 22569999999999999
Q ss_pred HHHHhCCCCCCCcCCCCCCCCeEEEEEec
Q 013150 167 AKNALDGRSIPRYLLPENMGPCTLRITYS 195 (448)
Q Consensus 167 A~~~l~g~~~~~~~~~~~~~~~~l~v~~s 195 (448)
|++.|++.+ +.++.|.+.+.
T Consensus 149 a~~~l~~~~---------~~~~~l~~~~~ 168 (216)
T KOG0106|consen 149 ALEKLDGKK---------LNGRRISVEKN 168 (216)
T ss_pred cchhccchh---------hcCceeeeccc
Confidence 999999999 67999998443
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2e-14 Score=106.97 Aligned_cols=67 Identities=30% Similarity=0.452 Sum_probs=61.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 20 l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
|||+|||.++|+++|+++|++||.|..+.+.. ++++++|||+|.+.++|++|++.++ +..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC----CCEECccCcC
Confidence 79999999999999999999999999999854 5678999999999999999999998 6789988874
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=3e-14 Score=121.23 Aligned_cols=77 Identities=17% Similarity=0.325 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.++.|| |.||+.++|+++|+++|++||.|.++++..++ +|| |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 33 ~~~~lf--VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGf-aFV~F~~~e~A~~Al~~lng~~i~Gr---~l 106 (144)
T PLN03134 33 MSTKLF--IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF-GFVNFNDEGAATAAISEMDGKELNGR---HI 106 (144)
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 356788 88999999999999999999999999996432 565 99999999999999999999999998 99
Q ss_pred EEEEeeCC
Q 013150 317 HISYSRHT 324 (448)
Q Consensus 317 ~v~~ak~~ 324 (448)
+|+|++.+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 99998654
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=128.30 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=123.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v 192 (448)
..|||++|+ +.+.+..|..+|..||.|.++.+.. +++||+|++..+|..|+..||+.. +.+..+.|
T Consensus 2 ~rv~vg~~~-~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~---------l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLP-YRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKE---------LCGERLVV 67 (216)
T ss_pred CceeecccC-CccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCce---------ecceeeee
Confidence 358899997 8999999999999999999988755 578999999999999999999998 55666888
Q ss_pred EecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCe
Q 013150 193 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 272 (448)
Q Consensus 193 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I 272 (448)
.|+....-.. ..... . ....+...-.......+.++ +.|+...+.+.+|.+.|+++|.+
T Consensus 68 e~~r~~~~~~----g~~~~------g---------~r~~~~~~~~~p~~s~~r~~--~~~~~~r~~~qdl~d~~~~~g~~ 126 (216)
T KOG0106|consen 68 EHARGKRRGR----GRPRG------G---------DRRSDSRRYRPPSRTHFRLI--VRNLSLRVSWQDLKDHFRPAGEV 126 (216)
T ss_pred eccccccccc----CCCCC------C---------CccchhhccCCcccccceee--eccchhhhhHHHHhhhhcccCCC
Confidence 8887432100 00000 0 00000000011122356666 78998899999999999999999
Q ss_pred eEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 273 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 273 ~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
....+ ..++ +||+|.+.++|.+|++.|+|..+.+. .|++.+
T Consensus 127 ~~~~~---~~~~-~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~~ 167 (216)
T KOG0106|consen 127 TYVDA---RRNF-AFVEFSEQEDAKRALEKLDGKKLNGR---RISVEK 167 (216)
T ss_pred chhhh---hccc-cceeehhhhhhhhcchhccchhhcCc---eeeecc
Confidence 55554 2244 99999999999999999999999998 888843
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=104.71 Aligned_cols=87 Identities=22% Similarity=0.401 Sum_probs=76.6
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe-ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 8 ~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i-~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
...|.+++-.+.|||+|||.++|.++..++|.+||.|..|+| .+..-+|.|||.|++..+|++|.+.+. +..+.+
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhls----g~n~~~ 84 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLS----GYNVDN 84 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhc----ccccCC
Confidence 345677888999999999999999999999999999999999 344458999999999999999999998 778999
Q ss_pred cEEEEeeccccc
Q 013150 87 KTVYLQYSNRQE 98 (448)
Q Consensus 87 ~~i~v~~s~~~~ 98 (448)
+.+.|-|....+
T Consensus 85 ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 85 RYLVVLYYQPED 96 (124)
T ss_pred ceEEEEecCHHH
Confidence 999998766543
No 61
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=2.7e-12 Score=119.69 Aligned_cols=282 Identities=15% Similarity=0.195 Sum_probs=176.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCC----CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPF----GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~f----G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...-.|-.++||+..++.+|..+|+-. |-+.-+....|+..|.|.|.|.|.|.-+.|++.- ...+.++.|.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRh-----khh~g~ryie 132 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRH-----KHHMGTRYIE 132 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhh-----hhhccCCcee
Confidence 334558889999999999999999843 3333344456777899999999999999999975 3478889898
Q ss_pred Eeecccccccc---CCccc----cCCCCeEEEEEcCCCCCCCcHHHHHHHhccc----CceEEEEEec---cCCCceEEE
Q 013150 91 LQYSNRQEIVN---NKTTA----DVAGNVLLVTIEGTDARLVSIDVLHLVFSAF----GFVHKITTFE---KTAGFQALV 156 (448)
Q Consensus 91 v~~s~~~~~~~---~~~~~----~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~----G~v~~v~~~~---~~~~~~afV 156 (448)
|.-+...+.-. ..+.+ ....+-+.|.+++|| .+.++.++.++|.+- |-++.|.+++ ++..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLP-fdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLP-FDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCC-CCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 87666554321 11111 112345678889998 789998888899632 3445665554 455678999
Q ss_pred EeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCC-
Q 013150 157 QFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD- 235 (448)
Q Consensus 157 eF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (448)
.|..+++|+.|+..-.+. ++.|-|.+-.|...+...-.+ |....+-........ ...++.
T Consensus 212 lfa~ee~aq~aL~khrq~----------iGqRYIElFRSTaaEvqqvln----r~~s~pLi~~~~sp~-----~p~~p~~ 272 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQN----------IGQRYIELFRSTAAEVQQVLN----REVSEPLIPGLTSPL-----LPGGPAR 272 (508)
T ss_pred EecCHHHHHHHHHHHHHH----------HhHHHHHHHHHhHHHHHHHHH----hhccccccCCCCCCC-----CCCCccc
Confidence 999999999999865433 444444444343322111000 000001100000000 000010
Q ss_pred CCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCee---EEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCcc
Q 013150 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ---KIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCI 308 (448)
Q Consensus 236 ~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~---~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l 308 (448)
.........++. +.+||++.+.|+|.++|..|-.-+ -|.++-+. .| -|||+|.+.|+|.+|....+....
T Consensus 273 ~~p~~~~kdcvR--LRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG-eAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 273 LVPPTRSKDCVR--LRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG-EAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred cCCCCCCCCeeE--ecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh-hhhhhhhhhHHHHHHHHHHHHhhc
Confidence 011112233444 899999999999999998886422 24443222 24 499999999999999999888776
Q ss_pred CCCceeEEEEEEeeCCccc
Q 013150 309 YDGGFCKLHISYSRHTDLS 327 (448)
Q Consensus 309 ~g~~~~~i~v~~ak~~~~~ 327 (448)
..+ -|.|--+.-.+++
T Consensus 350 k~R---YiEvfp~S~eeln 365 (508)
T KOG1365|consen 350 KSR---YIEVFPCSVEELN 365 (508)
T ss_pred ccc---eEEEeeccHHHHH
Confidence 566 5655544444443
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.7e-13 Score=124.76 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC-CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA-NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~-~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.++|||+||++++||+||+++|+.||+|++|.|...+ ++|||||+|.+.++|++||. ++ +..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-Ln----G~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LS----GATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hc----CCeeCCceEEEEecc
Confidence 5899999999999999999999999999999996554 68999999999999999995 66 669999999999875
Q ss_pred cc
Q 013150 96 RQ 97 (448)
Q Consensus 96 ~~ 97 (448)
.-
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.8e-13 Score=100.88 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC---CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 20 LHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA---NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 20 l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~---~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
|||+|||.++|++||+++|+.||.|..+++...+ .+++|||+|.+.++|++|++.++ +..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC----CcEECCEEcC
Confidence 7999999999999999999999999999996543 58999999999999999999997 6799999874
No 64
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=115.69 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=68.6
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
|||+||+..+++.||+.+|+.||.|.+|.|-....|| |||+|++..+|+.|+..|||..|+|. .|+|++++-..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf-AFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~~ 86 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF-AFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGRP 86 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc-eEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCCc
Confidence 4499999999999999999999999999997777787 99999999999999999999999998 99999986654
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.45 E-value=2.1e-12 Score=119.27 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=125.3
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceE--------EEEEec---cCCCceEEEEeCCHHHHHHHHHHhCCCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVH--------KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPR 178 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~--------~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~ 178 (448)
.....|||.||| ..+|.+++.++|+++|.|. +|++.+ ++-+|-|++.|...|+...|++.|++..
T Consensus 132 ~~Nt~VYVsgLP-~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~--- 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLP-LDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE--- 207 (382)
T ss_pred ccCceEEecCCC-CcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc---
Confidence 444568999998 7899999999999999883 355555 3345669999999999999999999998
Q ss_pred cCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCC--CCCCCCCcEEEEEEeCCCc-
Q 013150 179 YLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDG--KKLEPESNVLLASIENMQY- 255 (448)
Q Consensus 179 ~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~v~nl~~- 255 (448)
+.|+.|+|+.|+-...... ...+......+...... ... .-...+.+.. .......+++. +.|+-.
T Consensus 208 ------~rg~~~rVerAkfq~Kge~-~~~~k~k~k~~~~kk~~-k~q-~k~~dw~pd~~~~sk~r~~~tVi--~kn~Ftp 276 (382)
T KOG1548|consen 208 ------LRGKKLRVERAKFQMKGEY-DASKKEKGKCKDKKKLK-KQQ-QKLLDWRPDRDDPSKARADRTVI--LKNMFTP 276 (382)
T ss_pred ------ccCcEEEEehhhhhhccCc-CcccccccccccHHHHH-HHH-HhhcccCCCccccccccCCcEEE--eeecCCH
Confidence 7799999987762211000 00000000000000000 000 0000000000 11112234444 566631
Q ss_pred ---cCC-------HHHHHHHHhhcCCeeEEEEEccC-CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 256 ---AVT-------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 256 ---~vt-------~~~L~~~F~~fG~I~~v~i~~~~-~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
..+ .++|++-|++||.|.+|.++... .|. +-|.|.+.++|..||+.|+|+.+.|+ .|..+....
T Consensus 277 ~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGv-vtV~f~n~eeA~~ciq~m~GR~fdgR---ql~A~i~DG 351 (382)
T KOG1548|consen 277 EDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGV-VTVSFRNNEEADQCIQTMDGRWFDGR---QLTASIWDG 351 (382)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCce-eEEEeCChHHHHHHHHHhcCeeecce---EEEEEEeCC
Confidence 122 35677889999999999997544 454 99999999999999999999999999 888876543
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=114.58 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
-.+.|||+||+.++++.||..+|..||.|.+|.|.. .-.|||||||++..||++|+..|+ +..|.|..|.|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LD----G~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLD----GKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcC----CccccCceEEEEeec
Confidence 357799999999999999999999999999999865 457999999999999999999999 669999999999987
Q ss_pred ccc
Q 013150 96 RQE 98 (448)
Q Consensus 96 ~~~ 98 (448)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 67
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.43 E-value=5.4e-13 Score=94.60 Aligned_cols=56 Identities=38% Similarity=0.611 Sum_probs=51.3
Q ss_pred HHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 262 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 262 L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
|+++|++||.|.++++.+++++ +|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~-~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG-FAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT-EEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 7899999999999999888745 599999999999999999999999998 9999997
No 68
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=3.3e-13 Score=100.26 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=59.1
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
|+|.|||.++|+++|+++|+.||.|..+++..+ ..+ +|||+|.+.++|++|++.|||..+.|+ .||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKG-YAFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccc-eEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 459999999999999999999999999999764 234 599999999999999999999999997 664
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.43 E-value=4.7e-13 Score=126.37 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=125.7
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
....++|++|. ..+++|.|++.|++||+|.++++++ +++.+++||+|++.+...+++..-... +.
T Consensus 5 ~~~KlfiGgis-w~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~----------~d 73 (311)
T KOG4205|consen 5 ESGKLFIGGLS-WETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHK----------LD 73 (311)
T ss_pred CCcceeecCcC-ccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccc----------cC
Confidence 34568899995 8999999999999999999999988 456678999999999988887743322 66
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
++.|.+.-+.......+.. .......+| |+.|+.++++++|++.|
T Consensus 74 gr~ve~k~av~r~~~~~~~---------------------------------~~~~tkkiF--vGG~~~~~~e~~~r~yf 118 (311)
T KOG4205|consen 74 GRSVEPKRAVSREDQTKVG---------------------------------RHLRTKKIF--VGGLPPDTTEEDFKDYF 118 (311)
T ss_pred CccccceeccCcccccccc---------------------------------cccceeEEE--ecCcCCCCchHHHhhhh
Confidence 7777776655432111000 001245566 88999999999999999
Q ss_pred hhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCccc
Q 013150 267 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 327 (448)
Q Consensus 267 ~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~~ 327 (448)
.+||.|.++.++-+ .+|| +||.|++.++..+++. ..-+.|.++ .+.|.-|-+++..
T Consensus 119 e~~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk---~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 119 EQFGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK---KVEVKRAIPKEVM 179 (311)
T ss_pred hccceeEeeEEeecccccccccc-eeeEeccccccceecc-cceeeecCc---eeeEeeccchhhc
Confidence 99999988877432 3677 9999999999888876 667788888 7777777666544
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.8e-13 Score=118.59 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.+.+|-|.||+.+++|+||++||.+||.|..|.+ .+|.+||||||.|.+.++|.+||+.++ +.-++.--|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln----G~gyd~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN----GYGYDNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc----CcccceEEEEE
Confidence 5788999999999999999999999999999988 467789999999999999999999999 56778888999
Q ss_pred eecccc
Q 013150 92 QYSNRQ 97 (448)
Q Consensus 92 ~~s~~~ 97 (448)
+|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999874
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=9.3e-13 Score=100.60 Aligned_cols=77 Identities=22% Similarity=0.409 Sum_probs=68.0
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
.+..|| |.|||+++|.|+.+++|.+||.|..|+|-..+ +| .|||.|++..+|.+|++.|+|+.+.++ -|.|-
T Consensus 17 vnriLy--irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrG-TAFVVYedi~dAk~A~dhlsg~n~~~r---yl~vl 90 (124)
T KOG0114|consen 17 VNRILY--IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRG-TAFVVYEDIFDAKKACDHLSGYNVDNR---YLVVL 90 (124)
T ss_pred hheeEE--EecCCccccHHHHHHHhhcccceEEEEecCccCcCc-eEEEEehHhhhHHHHHHHhcccccCCc---eEEEE
Confidence 366777 99999999999999999999999999994333 46 499999999999999999999999999 99998
Q ss_pred EeeCC
Q 013150 320 YSRHT 324 (448)
Q Consensus 320 ~ak~~ 324 (448)
|-...
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 86554
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.5e-13 Score=106.92 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=68.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.|+||||+||..-+||+.|.+||+++|+|..|.+ .+....||+||||.+.++|+.|++.++ +..++.+.|.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis----gtrLddr~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS----GTRLDDRPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc----cCcccccceee
Confidence 5899999999999999999999999999998887 233346999999999999999999998 67999999999
Q ss_pred eecc
Q 013150 92 QYSN 95 (448)
Q Consensus 92 ~~s~ 95 (448)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 8754
No 73
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=6.3e-13 Score=121.81 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee--cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN--VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~--~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
-+.|||.|||...-|.||+.+|++||+|.+|.|+ ..-||||+||+|++.+||++|-++++ +..+.||+|.|.-+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LH----gt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELH----GTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhh----cceeeceEEEEecc
Confidence 4789999999999999999999999999999984 34589999999999999999999999 67999999999987
Q ss_pred ccc
Q 013150 95 NRQ 97 (448)
Q Consensus 95 ~~~ 97 (448)
+.+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 765
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.6e-13 Score=119.23 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=64.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..|||++|++.++.++|++.|++||+|++.+| .++|||||+||+|++.|+|.+|.+.-+ ..|+||+..+..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-----piIdGR~aNcnl 87 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-----PIIDGRKANCNL 87 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-----Ccccccccccch
Confidence 46999999999999999999999999999888 457899999999999999999999765 479999877665
Q ss_pred c
Q 013150 94 S 94 (448)
Q Consensus 94 s 94 (448)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=121.68 Aligned_cols=126 Identities=23% Similarity=0.296 Sum_probs=100.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
.++|||+|||.++|+++|+++|++||.|..+.+ .+++++|||||+|.+.++|..|++.++ +..+.|+.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~----~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN----GKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC----CCeECCceeEee
Confidence 699999999999999999999999999988888 346789999999999999999999998 679999999999
Q ss_pred eccc----cccccC-----------CccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec
Q 013150 93 YSNR----QEIVNN-----------KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE 147 (448)
Q Consensus 93 ~s~~----~~~~~~-----------~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~ 147 (448)
+... +..... ............+++.+++ ..++.+.+...|..+|.+....+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 191 KAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLP-LKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccccccccccccchhhhccccccccccccccceeeccccc-cccchhHHHHhccccccceeeeccC
Confidence 8542 111110 0001122344556777996 7899999999999999997766655
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.39 E-value=2.3e-11 Score=115.34 Aligned_cols=197 Identities=20% Similarity=0.184 Sum_probs=131.1
Q ss_pred CCCeEEEEEcCCCCCCCcHHHHHHHhc-ccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCC
Q 013150 109 AGNVLLVTIEGTDARLVSIDVLHLVFS-AFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184 (448)
Q Consensus 109 ~~~~~~v~V~nlp~~~~~~e~l~~~f~-~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~ 184 (448)
..+...+||.|+| +++.+..|++||. +.|+|+.|.++. .+.+++|.|||+++|.+++|++.||..+
T Consensus 41 ~~r~R~vfItNIp-yd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~--------- 110 (608)
T KOG4212|consen 41 AARDRSVFITNIP-YDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE--------- 110 (608)
T ss_pred ccccceEEEecCc-chhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc---------
Confidence 3455558888998 8999999999985 689999997765 5567899999999999999999999988
Q ss_pred CCCeEEEEEecCCCcccc------------------cccc-----------cCC-----cCCCCCCC----CCCCCc---
Q 013150 185 MGPCTLRITYSAHTDLSV------------------KFQS-----------HRS-----RDYTNPYL----PVAPSA--- 223 (448)
Q Consensus 185 ~~~~~l~v~~s~~~~~~~------------------~~~~-----------~~~-----~~~~~~~~----~~~~~~--- 223 (448)
+.+++|.|+-....+... +.-. ... +|...+.. ..-+..
T Consensus 111 ~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 111 VNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred ccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccccccccc
Confidence 889999986432211000 0000 000 00000000 000000
Q ss_pred cCccCC----cccc-CCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEE-Ec---cCCCeEEEEEcCCHH
Q 013150 224 IDASGQ----LSVG-LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FD---KNGGLQALIQYPDVQ 294 (448)
Q Consensus 224 ~~~~~~----~~~~-~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i-~~---~~~g~~afV~f~~~e 294 (448)
.+.... ..+. +......+....+| |.||.+.+..+.|++.|.--|.|++|.+ +. .++|+ +.++|++.-
T Consensus 191 ~~~~~lfgl~~~Flr~~h~f~pPl~~k~f--vanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~-~vi~y~hpv 267 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHIFSPPLHNKVF--VANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF-AVIEYDHPV 267 (608)
T ss_pred chhhhcccchhhhhhhccCCCCCccceee--eeccccccchHHHHHHhccceeeeeeceeeccccccCCe-eEEEecchH
Confidence 000000 0000 01111223345566 8999999999999999999999999977 22 23565 999999999
Q ss_pred HHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 295 TAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 295 ~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+|..||..|++.-++.+ +..+.+.
T Consensus 268 eavqaIsml~~~g~~~~---~~~~Rl~ 291 (608)
T KOG4212|consen 268 EAVQAISMLDRQGLFDR---RMTVRLD 291 (608)
T ss_pred HHHHHHHhhccCCCccc---cceeecc
Confidence 99999999999877777 6666653
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-12 Score=115.28 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=69.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.++++. |.||+.+.+|++|+++|.+||.|.++.+.+++ +|| |||.|.+.++|++||+.|||+-+++= .|
T Consensus 188 D~~tvR--vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---IL 261 (270)
T KOG0122|consen 188 DEATVR--VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---IL 261 (270)
T ss_pred ccceeE--EecCccccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---EE
Confidence 456777 88999999999999999999999999996554 577 99999999999999999999987776 99
Q ss_pred EEEEeeCC
Q 013150 317 HISYSRHT 324 (448)
Q Consensus 317 ~v~~ak~~ 324 (448)
+|+|||++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.37 E-value=3.5e-11 Score=121.68 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
-+++|| |+.|+.++++.+|.++|+.||.|.+|.++...+ ||||.+....+|.+|+.+|++..+.++ .|+|.|+
T Consensus 420 ~SrTLw--vG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLW--VGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWA 492 (894)
T ss_pred eeeeee--eccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeee
Confidence 467888 999999999999999999999999999987765 799999999999999999999999999 9999999
Q ss_pred eCC
Q 013150 322 RHT 324 (448)
Q Consensus 322 k~~ 324 (448)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 654
No 79
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=3.9e-12 Score=113.95 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
...||||+||++++||+||+++|+.||+|.+|.|.. ++.+++|||+|.++++|+.|+. ++ +..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-Ln----Ga~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LS----GATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cC----CCeeCCceEEEEeC
Confidence 468999999999999999999999999999999954 4567899999999999999995 55 66899999999754
Q ss_pred c
Q 013150 95 N 95 (448)
Q Consensus 95 ~ 95 (448)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.33 E-value=6.8e-12 Score=92.98 Aligned_cols=70 Identities=29% Similarity=0.414 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC--CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~--~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
+|||+|||.++++++|+++|++||.|..+.+... .++++|||+|.+.++|++|++.++ +..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~----~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN----GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC----CcEECCEEEeeC
Confidence 5899999999999999999999999999988643 367999999999999999999988 567888888763
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=4.6e-12 Score=121.72 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCH--HHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADL--NQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~--e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
....+||||||++++|++||+.+|+.||.|.+|.|.+...||||||+|.+. +++.+||+.|+ +..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLN----GAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYN----GCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhc----CCeecCceeEEe
Confidence 345789999999999999999999999999999997555599999999987 78999999999 679999999998
Q ss_pred ecccc
Q 013150 93 YSNRQ 97 (448)
Q Consensus 93 ~s~~~ 97 (448)
.++..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 87654
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.32 E-value=6.6e-11 Score=114.46 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=112.5
Q ss_pred CCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec--cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 109 ~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~--~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
.+....|.+++|| ..+|+++|.++|+.++ |+++++.+ .+..+-|||||.++||+.+|++. +-.. ++
T Consensus 7 ~~~~~~vr~rGLP-wsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~---------mg 74 (510)
T KOG4211|consen 7 GSTAFEVRLRGLP-WSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRES---------MG 74 (510)
T ss_pred CCcceEEEecCCC-ccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHH---------hC
Confidence 4566778899998 8999999999998885 66676666 44557799999999999999993 3333 67
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
.+-|.|--+...+....... .+.......- +|.+..||+.||+++|.++|
T Consensus 75 ~RYIEVf~~~~~e~d~~~~~----------------------------~g~~s~~~d~--vVRLRGLPfscte~dI~~FF 124 (510)
T KOG4211|consen 75 HRYIEVFTAGGAEADWVMRP----------------------------GGPNSSANDG--VVRLRGLPFSCTEEDIVEFF 124 (510)
T ss_pred CceEEEEccCCccccccccC----------------------------CCCCCCCCCc--eEEecCCCccCcHHHHHHHh
Confidence 78888877765543211000 0000001123 34489999999999999999
Q ss_pred hhcCCeeE-EEEEcc---CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 267 SAFGPVQK-IAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 267 ~~fG~I~~-v~i~~~---~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
+.--.|.. |.+... +.+.-|||+|++.+.|++|+.. |...|..+ -|.|--
T Consensus 125 aGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhR---YIEvF~ 178 (510)
T KOG4211|consen 125 AGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHR---YIEVFR 178 (510)
T ss_pred cCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccc---eEEeeh
Confidence 97755544 222222 2223599999999999999873 33344444 444443
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=8e-12 Score=113.86 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=66.1
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.++|| |+||+..+|+++|+++|+.||.|.+|+|..++ +|+ |||+|.+.++|..|+. |||..|.|+ .|+|++
T Consensus 4 ~rtVf--VgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~Gf-AFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~ 76 (260)
T PLN03120 4 VRTVK--VSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQI-AYVTFKDPQGAETALL-LSGATIVDQ---SVTITP 76 (260)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEe
Confidence 45667 99999999999999999999999999996653 465 9999999999999995 999999999 999998
Q ss_pred eeC
Q 013150 321 SRH 323 (448)
Q Consensus 321 ak~ 323 (448)
+..
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 653
No 84
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8.8e-12 Score=113.04 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=75.8
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.....-|-+||||+-|+.+++|.+|+..|+.||.|+.|.| +++++||||||||.++.+...|.+..+ ++.|+
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad----G~~Id 169 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD----GIKID 169 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc----Cceec
Confidence 3445567899999999999999999999999999999998 578999999999999999999999987 78999
Q ss_pred CcEEEEeeccccc
Q 013150 86 GKTVYLQYSNRQE 98 (448)
Q Consensus 86 g~~i~v~~s~~~~ 98 (448)
|+.|.|.+-..+.
T Consensus 170 grri~VDvERgRT 182 (335)
T KOG0113|consen 170 GRRILVDVERGRT 182 (335)
T ss_pred CcEEEEEeccccc
Confidence 9999998765443
No 85
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.7e-12 Score=100.11 Aligned_cols=74 Identities=22% Similarity=0.400 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEE-EccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i-~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|+ |+||...++||.|+++|+++|.|.+|.+ +.+. .|| +||+|.+.++|..|++.+||..+..+ .|
T Consensus 35 ~S~tvy--VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGF-CFVeyy~~~dA~~AlryisgtrLddr---~i 108 (153)
T KOG0121|consen 35 KSCTVY--VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGF-CFVEYYSRDDAEDALRYISGTRLDDR---PI 108 (153)
T ss_pred hcceEE--EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccce-EEEEEecchhHHHHHHHhccCccccc---ce
Confidence 477788 9999999999999999999999999988 2221 355 99999999999999999999999999 99
Q ss_pred EEEEe
Q 013150 317 HISYS 321 (448)
Q Consensus 317 ~v~~a 321 (448)
+|.|.
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 99984
No 86
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.5e-11 Score=87.11 Aligned_cols=56 Identities=38% Similarity=0.566 Sum_probs=50.8
Q ss_pred HHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEec
Q 013150 130 LHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195 (448)
Q Consensus 130 l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s 195 (448)
|+++|++||+|.++.+.+++ ++.|||+|.+.++|..|++.|||.. +.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~---------~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQ---------FNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSE---------ETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCE---------ECCcEEEEEEC
Confidence 67899999999999998866 5789999999999999999999998 77999999986
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6.1e-12 Score=100.81 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
..-.|||.++...+||+||.+.|..||+|+++.+ .+|-.||||+|||++.++|++|+..+| +..|.|+.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N----g~~ll~q~v~V 146 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN----GAELLGQNVSV 146 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc----chhhhCCceeE
Confidence 4567999999999999999999999999999988 345569999999999999999999998 77999999999
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
.|+-.
T Consensus 147 Dw~Fv 151 (170)
T KOG0130|consen 147 DWCFV 151 (170)
T ss_pred EEEEe
Confidence 88643
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.3e-12 Score=109.42 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=77.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....|||||++|-.+|||.-|...|-+||.|.+|.+ .+.++||||||||.-.|||..||..|| ...+.||.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn----esEL~Grti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN----ESELFGRTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc----hhhhcceeE
Confidence 346799999999999999999999999999999998 466889999999999999999999999 569999999
Q ss_pred EEeeccccccccCC
Q 013150 90 YLQYSNRQEIVNNK 103 (448)
Q Consensus 90 ~v~~s~~~~~~~~~ 103 (448)
+|.++++..++...
T Consensus 83 rVN~AkP~kikegs 96 (298)
T KOG0111|consen 83 RVNLAKPEKIKEGS 96 (298)
T ss_pred EEeecCCccccCCC
Confidence 99999988776543
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.1e-11 Score=120.92 Aligned_cols=165 Identities=22% Similarity=0.265 Sum_probs=123.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..+||++||...++.+++++...||.+....++ .+.+|||||-||.+......|+..+| +..++++.|.|+.
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn----Gm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN----GMQLGDKKLVVQR 365 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc----hhhhcCceeEeeh
Confidence 559999999999999999999999999887773 45789999999999999999999998 7789999999876
Q ss_pred ccccccccC--C---------------ccccCCCCeEEEEEcCCCC--CCCcHH-------HHHHHhcccCceEEEEEec
Q 013150 94 SNRQEIVNN--K---------------TTADVAGNVLLVTIEGTDA--RLVSID-------VLHLVFSAFGFVHKITTFE 147 (448)
Q Consensus 94 s~~~~~~~~--~---------------~~~~~~~~~~~v~V~nlp~--~~~~~e-------~l~~~f~~~G~v~~v~~~~ 147 (448)
+........ . .....+.+++.+. |+-. +-.+++ .++.-|++||.|.+|.+.+
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~--n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLT--NVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhh--hcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 543321110 0 0111233343333 4421 112222 2344578999999999877
Q ss_pred c-------CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 148 K-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 148 ~-------~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
. ...|..||||.+.+++++|+++|+|++ +.++.+...|-..
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK---------F~nRtVvtsYyde 491 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK---------FANRTVVASYYDE 491 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCce---------eCCcEEEEEecCH
Confidence 3 234569999999999999999999999 7899999888653
No 90
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=1.6e-11 Score=91.34 Aligned_cols=66 Identities=32% Similarity=0.465 Sum_probs=57.2
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
|+|.|||.++++++|+++|+.||.|..+++...+ +| .|||+|.+.++|.+|++.++|..+.|+ .|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~-~a~v~f~~~~~a~~al~~~~~~~~~g~---~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRG-FAFVEFSSEEDAKRALELLNGKEIDGR---KLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEE-EEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCC-EEEEEeCCHHHHHHHHHHCCCcEECCE---EcC
Confidence 4599999999999999999999999999997764 34 499999999999999999999999998 664
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.4e-12 Score=109.88 Aligned_cols=80 Identities=18% Similarity=0.424 Sum_probs=72.1
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEE-----ccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~-----~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|+ |++|.++|||..|...|-+||.|..|.+. .+.+|| |||+|...|+|.+||..||+..|+|+ +|+
T Consensus 10 KrtlY--VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---tir 83 (298)
T KOG0111|consen 10 KRTLY--VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---TIR 83 (298)
T ss_pred ceeEE--eccchHHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---eEE
Confidence 56677 99999999999999999999999999882 244787 99999999999999999999999999 999
Q ss_pred EEEeeCCcccc
Q 013150 318 ISYSRHTDLSI 328 (448)
Q Consensus 318 v~~ak~~~~~~ 328 (448)
|.||++.+++.
T Consensus 84 VN~AkP~kike 94 (298)
T KOG0111|consen 84 VNLAKPEKIKE 94 (298)
T ss_pred EeecCCccccC
Confidence 99999986553
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.25 E-value=1.1e-11 Score=106.62 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.-.+|.|-||-+.+|.++|+.+|++||.|.+|.| .++.++|||||.|.+..||++|+++|+ +..++|+.|.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD----G~~ldgRelrV 87 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD----GAVLDGRELRV 87 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc----ceeeccceeee
Confidence 3467999999999999999999999999999999 566789999999999999999999999 78999999999
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
+++..
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 98764
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=5.2e-11 Score=88.69 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=63.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC---CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA---NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~---~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
+|+|+|||.++++++|+++|+.||.|..+.+...+ .+++|||+|.+.++|..|++.++ +..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC----CCeECCeEEEEeC
Confidence 58999999999999999999999999999986543 48999999999999999999998 5568899988864
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=3.4e-11 Score=88.82 Aligned_cols=67 Identities=28% Similarity=0.414 Sum_probs=59.2
Q ss_pred EcCCCCCCCHHHHHHhhcCCCceEEEEeecC----CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 22 LRNLPWECTEEELIELGKPFGKVVNTKCNVG----ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 22 V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~----~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
|+|||.++++++|+++|++||.|..+.+... +++++|||+|.+.++|.+|++.++ +..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~----~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN----GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC----CCeeCCcEEEeC
Confidence 6899999999999999999999999998543 448999999999999999999988 567888888763
No 95
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.8e-11 Score=110.24 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=67.5
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEE---ccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF---DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~---~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
+.|. |.|+|+..-|-||+..|.+||.|++|.|+ +.++|| |||+|++.++|++|.++|||..+.|+ +|.|..
T Consensus 97 kRLh--VSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~ 170 (376)
T KOG0125|consen 97 KRLH--VSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNN 170 (376)
T ss_pred ceeE--eecCCccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEec
Confidence 4555 88999999999999999999999999884 344677 99999999999999999999999999 999998
Q ss_pred eeCC
Q 013150 321 SRHT 324 (448)
Q Consensus 321 ak~~ 324 (448)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8655
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.21 E-value=5e-11 Score=114.68 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=68.4
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-CCeEEEEEcCCH--HHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-~g~~afV~f~~~--e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
..|||+||.+.|++++|+.+|+.||.|.+|.|++.+ +|| |||+|.+. .++.+||+.|||..+.|+ .|+|.-||
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGF-AFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKAK 86 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKAK 86 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCce-EEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeecc
Confidence 344499999999999999999999999999997654 566 99999987 789999999999999999 99999998
Q ss_pred CCc
Q 013150 323 HTD 325 (448)
Q Consensus 323 ~~~ 325 (448)
+.-
T Consensus 87 P~Y 89 (759)
T PLN03213 87 EHY 89 (759)
T ss_pred HHH
Confidence 763
No 97
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.20 E-value=2.6e-09 Score=108.41 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v 192 (448)
..|+|++|+ ..+++++|.++|+.||.|++|.++..+ ++|||.+....+|.+|+.+|++.. +.++.|+|
T Consensus 422 rTLwvG~i~-k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~k---------v~~k~Iki 489 (894)
T KOG0132|consen 422 RTLWVGGIP-KNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVK---------VADKTIKI 489 (894)
T ss_pred eeeeecccc-chhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccc---------ccceeeEE
Confidence 346677996 999999999999999999999988755 789999999999999999999888 77999999
Q ss_pred EecCCCccc
Q 013150 193 TYSAHTDLS 201 (448)
Q Consensus 193 ~~s~~~~~~ 201 (448)
.|+-.+..+
T Consensus 490 ~Wa~g~G~k 498 (894)
T KOG0132|consen 490 AWAVGKGPK 498 (894)
T ss_pred eeeccCCcc
Confidence 999866543
No 98
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.20 E-value=1.9e-11 Score=105.13 Aligned_cols=76 Identities=24% Similarity=0.436 Sum_probs=68.6
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
..|. |.||.+-++.++|+.+|++||.|-+|.|..+ .+|| |||.|-+..+|+.|+++|+|..|+|+ .|+|
T Consensus 14 ~SLk--VdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrV 87 (256)
T KOG4207|consen 14 TSLK--VDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRV 87 (256)
T ss_pred eeEE--ecceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeee
Confidence 4455 8999999999999999999999999999543 4687 99999999999999999999999999 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
++|+...
T Consensus 88 q~arygr 94 (256)
T KOG4207|consen 88 QMARYGR 94 (256)
T ss_pred hhhhcCC
Confidence 9998764
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=1.2e-10 Score=86.24 Aligned_cols=67 Identities=27% Similarity=0.409 Sum_probs=59.9
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
|+|.||+..+++++|+++|+.||.|.++++...+ .| +|||+|.+.++|++|++.|+|..+.|+ .|+|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKG-FAFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCc-eEEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 3489999999999999999999999999987654 35 499999999999999999999999887 7766
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=104.25 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=63.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
+.+++ |.||+..+|+++|+++|+.||.|.+|+|.++. ++ +|||+|.+.++|..|+ .|||..|.+. .|.|.-
T Consensus 5 g~TV~--V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~g-fAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~ 77 (243)
T PLN03121 5 GYTAE--VTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYAC-TAYVTFKDAYALETAV-LLSGATIVDQ---RVCITR 77 (243)
T ss_pred ceEEE--EecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcce-EEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEe
Confidence 45666 89999999999999999999999999997654 34 4999999999999999 5999999999 888876
Q ss_pred ee
Q 013150 321 SR 322 (448)
Q Consensus 321 ak 322 (448)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 43
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=6.1e-11 Score=117.02 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
++|||||||++++|++|.++|+..|.|.++++ .+|+.|||||++|.+.|+|++|++.++ +..+.|++|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN----g~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN----GAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC----CcccCCceEEeec
Confidence 89999999999999999999999999999999 567889999999999999999999999 7899999999999
Q ss_pred cccccc
Q 013150 94 SNRQEI 99 (448)
Q Consensus 94 s~~~~~ 99 (448)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 876554
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.9e-12 Score=106.14 Aligned_cols=73 Identities=21% Similarity=0.433 Sum_probs=68.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.|.-|||+|||.+.||-||.-.|++||+|++|.+ .+|+||||||+.|++..+..-||..+| ++.|.||.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N----Giki~gRtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN----GIKILGRTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC----CceecceeEEe
Confidence 4677999999999999999999999999999998 468899999999999999999999998 89999999999
Q ss_pred e
Q 013150 92 Q 92 (448)
Q Consensus 92 ~ 92 (448)
.
T Consensus 110 D 110 (219)
T KOG0126|consen 110 D 110 (219)
T ss_pred e
Confidence 6
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.8e-10 Score=84.85 Aligned_cols=66 Identities=26% Similarity=0.449 Sum_probs=58.2
Q ss_pred EeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
|.||+..+++++|+++|+.||.|.++++...+ .|+ |||+|.+.++|.+|++.|+|..+.|+ .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGF-AFVEFESEEDAEKALEALNGKELDGR---PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCce-EEEEeCCHHHHHHHHHHcCCCeeCCc---EEEeC
Confidence 46889999999999999999999999986654 354 99999999999999999999999888 77763
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=93.15 Aligned_cols=75 Identities=20% Similarity=0.424 Sum_probs=65.5
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEE-ccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~-~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
+..|| |.++..+.||++|.+.|+.||+|..+.+. ... +|+ |+|+|.+.++|++||..|||..|.|. .|.
T Consensus 72 GwIi~--VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGY-aLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 72 GWIIF--VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGY-ALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred eEEEE--EeccCcchhHHHHHHHHhhcccccceeeccccccccccce-eeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 56677 77999999999999999999999999883 222 354 99999999999999999999999999 999
Q ss_pred EEEeeC
Q 013150 318 ISYSRH 323 (448)
Q Consensus 318 v~~ak~ 323 (448)
|.|+-.
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 999743
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=7e-10 Score=109.09 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=110.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..++++|+|-|||.+|++++|+.+|+.||+|..|+. +...+|..||||.|..+|+.|++.++ ...|.|+.|.-..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~----~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALN----RREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHH----HHHhhhhhhcCCC
Confidence 456899999999999999999999999999999664 34458999999999999999999999 5688888777221
Q ss_pred ccccccc--c-------------CCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEe
Q 013150 94 SNRQEIV--N-------------NKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQF 158 (448)
Q Consensus 94 s~~~~~~--~-------------~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF 158 (448)
...+... . ....+.++... ++ +.|. ...+...+...++.+|.+.. .-.... ..+-|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~--~~-g~l~-P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQ--LF-GMLS-PTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCc--ce-eeec-cchhhhhhhcchhccCcccc-ccccch-hhhhhhhh
Confidence 1111100 0 00111122122 22 2374 67777778888888888765 332211 12689999
Q ss_pred CCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 159 SDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 159 ~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
.+..++..+...+ |.. +.+....+.++..
T Consensus 221 ~~~~s~a~~~~~~-G~~---------~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFL---------ISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCC-cee---------cCCCCceEEecCC
Confidence 9999995555522 333 4455566666664
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5.7e-10 Score=82.94 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=61.6
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
|+|.|||..+++++|+++|+.||.|.++.+.... .|+ |||+|.+.++|..|++.+++..+.|+ .|.|+|
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~-~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGF-AFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 3489999999999999999999999999987654 454 99999999999999999999999888 888764
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.09 E-value=1.9e-09 Score=102.22 Aligned_cols=141 Identities=16% Similarity=0.224 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
...|+|+||+ ..++++.|+++|.+||.|..+.+.. ...+++|||+|.+.++|..|++.++|.. +.+
T Consensus 115 ~~~l~v~nL~-~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~---------~~~ 184 (306)
T COG0724 115 NNTLFVGNLP-YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKE---------LEG 184 (306)
T ss_pred CceEEEeCCC-CCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCe---------ECC
Confidence 4678888997 8999999999999999998887765 3567899999999999999999999888 789
Q ss_pred eEEEEEecCC-CcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 188 CTLRITYSAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 188 ~~l~v~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
++|.|.++.. ................... .............++ +.+++..++.+.+...|
T Consensus 185 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 246 (306)
T COG0724 185 RPLRVQKAQPASQPRSELSNNLDASFAKKL----------------SRGKALLLEKSDNLY--VGNLPLKTAEEELADLF 246 (306)
T ss_pred ceeEeeccccccccccccccccchhhhccc----------------cccccccccccceee--ccccccccchhHHHHhc
Confidence 9999999653 1100000000000000000 000011112244455 88999999999999999
Q ss_pred hhcCCeeEEEEEcc
Q 013150 267 SAFGPVQKIAMFDK 280 (448)
Q Consensus 267 ~~fG~I~~v~i~~~ 280 (448)
..+|.+..+.+...
T Consensus 247 ~~~~~~~~~~~~~~ 260 (306)
T COG0724 247 KSRGDIVRASLPPS 260 (306)
T ss_pred cccccceeeeccCC
Confidence 99999977777443
No 108
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=4.1e-10 Score=104.44 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
+.....+||||++|-..++|.||++.|-+||+|+++.++.+ +++|||+|.+.+.|++|....- +.+.|+|++|+|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~--~~CAFv~ftTR~aAE~Aae~~~---n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR--KGCAFVTFTTREAAEKAAEKSF---NKLVINGFRLKI 297 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc--cccceeeehhhHHHHHHHHhhc---ceeeecceEEEE
Confidence 45556789999999999999999999999999999999866 7899999999999999998765 388999999999
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
.|+..
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 109
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=5e-11 Score=103.51 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCC--cceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN--RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~--kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
+.+..+||||.||-..|||+-|.++|-+-|.|..|+|-+++. ..||||+|.++-...-|++.+| ++.+.++++.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~n----g~~l~~~e~q 80 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLEN----GDDLEEDEEQ 80 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcc----cchhccchhh
Confidence 466789999999999999999999999999999999965543 3499999999999999999998 7788888877
Q ss_pred EeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHH
Q 013150 91 LQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 91 v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A 167 (448)
|.+-...... -| ++.+++|++++.|+..|.++.+.+.+ ++....+||.+.-....-.+
T Consensus 81 ~~~r~G~sha------------------pl-d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 81 RTLRCGNSHA------------------PL-DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred cccccCCCcc------------------hh-hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 7643321100 25 57899999999999999999988766 33445688988877777788
Q ss_pred HHHhCCCC
Q 013150 168 KNALDGRS 175 (448)
Q Consensus 168 ~~~l~g~~ 175 (448)
+....+..
T Consensus 142 ~~~y~~l~ 149 (267)
T KOG4454|consen 142 LDLYQGLE 149 (267)
T ss_pred hhhhcccC
Confidence 88777765
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=4.7e-10 Score=98.98 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=65.6
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
+..+|||++|+ ..+..|.|++.|++||+|++.+++. ++++|++||+|.+.|+|.+|++.-|=. +.
T Consensus 11 ~~TKifVggL~-w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi----------Id 79 (247)
T KOG0149|consen 11 TFTKIFVGGLA-WETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI----------ID 79 (247)
T ss_pred eEEEEEEcCcc-cccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc----------cc
Confidence 56789999997 8899999999999999999988776 567899999999999999999965532 78
Q ss_pred CeEEEEEecCC
Q 013150 187 PCTLRITYSAH 197 (448)
Q Consensus 187 ~~~l~v~~s~~ 197 (448)
||+..++.+..
T Consensus 80 GR~aNcnlA~l 90 (247)
T KOG0149|consen 80 GRKANCNLASL 90 (247)
T ss_pred ccccccchhhh
Confidence 99888887764
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=9.3e-09 Score=100.49 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=105.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee-----cC--CCcc---eEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN-----VG--ANRN---QAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~-----~~--~~kg---~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
|+.|||++||++++|+.|...|..||.+. |..- .+ ..+| |+|+-|+++..+++-|.++.. ..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-------~~ 330 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-------GE 330 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-------cc
Confidence 78899999999999999999999999975 3331 11 1366 999999999999999998762 33
Q ss_pred cEEEEeecccccccc-C-------------CccccCCCCeEEEEEcCCCCCCCcHHHHHHHhc-ccCceEEEEEecc---
Q 013150 87 KTVYLQYSNRQEIVN-N-------------KTTADVAGNVLLVTIEGTDARLVSIDVLHLVFS-AFGFVHKITTFEK--- 148 (448)
Q Consensus 87 ~~i~v~~s~~~~~~~-~-------------~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~-~~G~v~~v~~~~~--- 148 (448)
...+++.+......+ . ......-+....|||++|| ..++.++|-.+|+ -||-|.-+-|-.+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 334433322221111 0 0011223455668899998 8899999999999 6999988876542
Q ss_pred -CCCceEEEEeCCHHHHHHHHH
Q 013150 149 -TAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 149 -~~~~~afVeF~~~e~A~~A~~ 169 (448)
=.+|.|=|.|.+..+-.+||+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCCCcceeeecccHHHHHHHh
Confidence 245779999999999999988
No 112
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=3.1e-11 Score=101.84 Aligned_cols=70 Identities=23% Similarity=0.444 Sum_probs=64.5
Q ss_pred EEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 247 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 247 ~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
+|||+|||++.||.+|.-+||+||+|+.|.+++++ +|| ||+.|++..+..-|+..|||..|.|+ +|+|.-
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---tirVDH 111 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH 111 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---eEEeee
Confidence 45599999999999999999999999999998754 577 99999999999999999999999999 999974
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.3e-09 Score=80.83 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=50.0
Q ss_pred CHHHHHHhhc----CCCceEEEE-e-e---c--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 30 TEEELIELGK----PFGKVVNTK-C-N---V--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 30 te~~L~~~F~----~fG~I~~v~-i-~---~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.++||+++|+ +||.|.+|. + . + ++++|||||+|.+.++|.+|++.++ +..+.|+.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~----g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN----GRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC----CCEECCEEEEe
Confidence 3678999998 999999985 3 2 2 6789999999999999999999999 66899998876
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=4.4e-10 Score=100.38 Aligned_cols=85 Identities=25% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
+....+..+.|||-.||.+.++.||..+|-.||.|.+.|+. +..||+|+||.|.+..+|+.||..|| ++.|+
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN----GFQIG 353 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN----GFQIG 353 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc----chhhh
Confidence 34467789999999999999999999999999999998883 45689999999999999999999999 77888
Q ss_pred CcEEEEeeccccc
Q 013150 86 GKTVYLQYSNRQE 98 (448)
Q Consensus 86 g~~i~v~~s~~~~ 98 (448)
=++|+|+...+++
T Consensus 354 MKRLKVQLKRPkd 366 (371)
T KOG0146|consen 354 MKRLKVQLKRPKD 366 (371)
T ss_pred hhhhhhhhcCccc
Confidence 8889988766554
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=1.6e-09 Score=80.45 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=47.6
Q ss_pred HHHHHHHHh----hcCCeeEEE-E-Ec------cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 259 LDVLHMVFS----AFGPVQKIA-M-FD------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 259 ~~~L~~~F~----~fG~I~~v~-i-~~------~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
+++|+++|+ +||.|.+|. + +. .++|+ |||+|.+.++|.+|++.|||..+.|+ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999995 4 32 23565 99999999999999999999999998 8876
No 116
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=4.7e-09 Score=95.53 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.+-++|| |.-|+++++|.+|+..|+.||.|.+|+++.+ .+|+ |||+|.+..+-.+|-+..+|..|.|+ .
T Consensus 99 DPy~TLF--v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGY-AFIeye~erdm~~AYK~adG~~Idgr---r 172 (335)
T KOG0113|consen 99 DPYKTLF--VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGY-AFIEYEHERDMKAAYKDADGIKIDGR---R 172 (335)
T ss_pred Cccceee--eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccce-EEEEeccHHHHHHHHHhccCceecCc---E
Confidence 4578999 7788889999999999999999999999664 3576 99999999999999999999999999 8
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|-|.+-+...
T Consensus 173 i~VDvERgRT 182 (335)
T KOG0113|consen 173 ILVDVERGRT 182 (335)
T ss_pred EEEEeccccc
Confidence 8888865543
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2.2e-09 Score=106.04 Aligned_cols=77 Identities=23% Similarity=0.411 Sum_probs=69.3
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
+.+| |+|+++++++|+|.++|+..|.|.+++++.+. +|| ||++|.+.++|..|++.|||..+.|+ +|+|
T Consensus 19 ~~v~--vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v 92 (435)
T KOG0108|consen 19 SSVF--VGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGR---KLRV 92 (435)
T ss_pred cceE--ecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCc---eEEe
Confidence 5566 99999999999999999999999999995443 566 99999999999999999999999999 9999
Q ss_pred EEeeCCcc
Q 013150 319 SYSRHTDL 326 (448)
Q Consensus 319 ~~ak~~~~ 326 (448)
.|+.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99976643
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=9.7e-10 Score=102.90 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=114.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCC----CceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPF----GKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~f----G~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
--.|-+++||.++|+.|+.++|..- |-.+.|.++ .||-.|-|||.|..+++|+.||..... .|+-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq-----~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ-----NIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH-----HHhHHHH
Confidence 3458899999999999999999732 233445443 466789999999999999999987652 4555666
Q ss_pred EEeecccccccc----CC--------cc---------ccC-CCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEE---EE
Q 013150 90 YLQYSNRQEIVN----NK--------TT---------ADV-AGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHK---IT 144 (448)
Q Consensus 90 ~v~~s~~~~~~~----~~--------~~---------~~~-~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~---v~ 144 (448)
.+-.|+..+... .. .. ... ....-.|.+++|| +..+.|+|.++|..|-.-.+ |+
T Consensus 236 ElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLP-y~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 236 ELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLP-YEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCC-hhhhHHHHHHHHHHHhhhcccceeE
Confidence 655444333110 00 00 000 1113346777998 77888888879888764322 33
Q ss_pred Eec---cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcc
Q 013150 145 TFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDL 200 (448)
Q Consensus 145 ~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~ 200 (448)
+.- ++..|.|||+|.+.|+|..|....+.+. ...+-|.|--+...++
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~---------mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL---------MKSRYIEVFPCSVEEL 364 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh---------cccceEEEeeccHHHH
Confidence 332 4445679999999999999999988775 4577777766655444
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=8.7e-09 Score=89.32 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCC-CceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPF-GKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~f-G~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
......-.++|..||..+.|.+|..+|.+| |.|..+++ .+|.|||||||||+++|.|+-|-+.|| ...+++
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN----NYLl~e 119 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN----NYLLME 119 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh----hhhhhh
Confidence 445667789999999999999999999999 88888887 568899999999999999999999999 667888
Q ss_pred cEEEEeecccc
Q 013150 87 KTVYLQYSNRQ 97 (448)
Q Consensus 87 ~~i~v~~s~~~ 97 (448)
+.|.+.+-.+.
T Consensus 120 ~lL~c~vmppe 130 (214)
T KOG4208|consen 120 HLLECHVMPPE 130 (214)
T ss_pred heeeeEEeCch
Confidence 88887765443
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.85 E-value=6.8e-08 Score=97.03 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=65.0
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE-EEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVN-TKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~-v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.+...+-..+|||..||..+++.++.++|+.--.|++ |.| -+++-++-|||+|.+++++.+|+..-. ...++
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~----k~y~G 502 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKT----KFYPG 502 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhccc----ccccC
Confidence 4456666889999999999999999999999888877 444 345568899999999999999987654 55677
Q ss_pred CcEEEEee
Q 013150 86 GKTVYLQY 93 (448)
Q Consensus 86 g~~i~v~~ 93 (448)
.+.|+|.-
T Consensus 503 ~r~irv~s 510 (944)
T KOG4307|consen 503 HRIIRVDS 510 (944)
T ss_pred ceEEEeec
Confidence 78888764
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.6e-09 Score=97.49 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=73.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
-..+|.++|||..|.+-+|++||.-+|+.||+|.+|.++ +|-+-.||||||.+.++.++|.=.|+ .+.|+.+
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd----NvLIDDr 309 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD----NVLIDDR 309 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc----ceeeccc
Confidence 346789999999999999999999999999999999985 44567899999999999999999998 7899999
Q ss_pred EEEEeeccc
Q 013150 88 TVYLQYSNR 96 (448)
Q Consensus 88 ~i~v~~s~~ 96 (448)
.|.|.||..
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999998754
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1e-08 Score=95.23 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHh-cCCccCCCceeEEE
Q 013150 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLH 317 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~l-ng~~l~g~~~~~i~ 317 (448)
.+...++|+ |++|-..++|.+|++.|.+||+|.++.++..++ ||||+|.+.++|+.|.+.+ |...|.|. +|+
T Consensus 224 eD~~I~tLy--Ig~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLY--IGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLK 296 (377)
T ss_pred cccceeEEE--ecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEE
Confidence 344456777 899988999999999999999999999988875 7999999999999988664 55566777 999
Q ss_pred EEEeeC
Q 013150 318 ISYSRH 323 (448)
Q Consensus 318 v~~ak~ 323 (448)
|.|++.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999988
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=2.5e-10 Score=117.09 Aligned_cols=229 Identities=15% Similarity=0.066 Sum_probs=169.4
Q ss_pred cEEEEcCCCCCCCHH-HHHHhhcCCCceEEEEeecCCC----cceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 18 KVLHLRNLPWECTEE-ELIELGKPFGKVVNTKCNVGAN----RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 18 ~~l~V~nLp~~~te~-~L~~~F~~fG~I~~v~i~~~~~----kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
+...+.++-+...+. ..+..|+.+|.|+.|++-.++. ..++++++....+++.|.... +..+.++.+.|.
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa-----~~~~a~~~~av~ 646 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPA-----GGALANRSAAVG 646 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccccc-----ccccCCccccCC
Confidence 446677777766666 5678999999999999865321 247899999999999988764 346778877777
Q ss_pred eccccccccCCc-cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEe----ccCCCceEEEEeCCHHHHHHH
Q 013150 93 YSNRQEIVNNKT-TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 93 ~s~~~~~~~~~~-~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~----~~~~~~~afVeF~~~e~A~~A 167 (448)
.++.+....... ..+.-...+.++|.||+ ..+.++.|...|+.+|.+..+.+. +++-+|.|||+|...++|.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~-~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLS-PKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcc-hhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 766655222111 01111123457888996 889999999999999988776443 355567899999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEE
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLL 247 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (448)
+....+.. + + ...++
T Consensus 726 V~f~d~~~---------~-g-------------------------------------------------------K~~v~ 740 (881)
T KOG0128|consen 726 VAFRDSCF---------F-G-------------------------------------------------------KISVA 740 (881)
T ss_pred hhhhhhhh---------h-h-------------------------------------------------------hhhhh
Confidence 99655432 1 1 11244
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
|.|+++..|.++|+.+|+.+|++.+++++..+ +|. |+|.|.+..+|.++...+++..+..+ .+.|..+.+
T Consensus 741 --i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~-a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vsnp 814 (881)
T KOG0128|consen 741 --ISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGK-ARVDYNTEADASRKVASVDVAGKREN---NGEVQVSNP 814 (881)
T ss_pred --eeCCCCCCchHHHHhhccccCCccccchhhhhccccccc-eeccCCCcchhhhhcccchhhhhhhc---CccccccCC
Confidence 88999999999999999999999999874433 455 99999999999999999988877766 666666544
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=2.8e-09 Score=109.89 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=124.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
.++|||++||+..+++.+|+..|..+|+|.+|.|.+ +..--||||.|.+...+-+|.-.+.+ ..|..-.+.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~----~~I~~g~~r~g 446 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESG----PLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcC----CccccCccccc
Confidence 468999999999999999999999999999999833 23356899999999998888877763 33333344444
Q ss_pred eccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhC
Q 013150 93 YSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 172 (448)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~ 172 (448)
+...+ ...+..+.+++|. ..+....|...|..||.|..|.+-.. ..||+|.|++...|+.|+..|.
T Consensus 447 lG~~k-----------st~ttr~~sgglg-~w~p~~~l~r~fd~fGpir~Idy~hg--q~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQPK-----------STPTTRLQSGGLG-PWSPVSRLNREFDRFGPIRIIDYRHG--QPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred ccccc-----------cccceeeccCCCC-CCChHHHHHHHhhccCcceeeecccC--CcceeeecccCccchhhHHHHh
Confidence 33221 1234457788995 88999999999999999999877554 3689999999999999999999
Q ss_pred CCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 173 GRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 173 g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
|..+- -..+.++|.|+..
T Consensus 513 gap~G-------~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 513 GAPLG-------GPPRRLRVDLASP 530 (975)
T ss_pred cCcCC-------CCCcccccccccC
Confidence 99865 5667899999874
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=94.88 Aligned_cols=190 Identities=7% Similarity=-0.044 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~ 185 (448)
+..|++.+.+++ .+.++.+++++|-. =.|..+.+.. ....|.++|+|....++++|++.-+.. .
T Consensus 309 ~d~~y~~~~gm~-fn~~~nd~rkfF~g-~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~----------~ 376 (944)
T KOG4307|consen 309 SDKYYNNYKGME-FNNDFNDGRKFFPG-RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSD----------D 376 (944)
T ss_pred chhheeeecccc-cccccchhhhhcCc-ccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchh----------h
Confidence 456788899996 88899999988742 2333333332 233567999999999999998743322 3
Q ss_pred CCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccC----ccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHH
Q 013150 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAID----ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDV 261 (448)
Q Consensus 186 ~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~ 261 (448)
..+.+.|.-........- ... .... +....+.+... ..+....+.........+.+|+ |..||..+++..
T Consensus 377 ~~R~~q~~P~g~~~~~~a--~~~-~~~~-~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~ly--v~~lP~~t~~~~ 450 (944)
T KOG4307|consen 377 VNRPFQTGPPGNLGRNGA--PPF-QAGV-PPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALY--VFQLPVMTPIVP 450 (944)
T ss_pred hhcceeecCCCccccccC--ccc-cccC-CCCcccccCCCCCCCcccccCCCCCCCCCCCccceEE--eccCCccccccc
Confidence 355555543321111000 000 0000 00000000000 0000011111112222344444 999999999999
Q ss_pred HHHHHhhcCCeeE-EEEEcc---C-CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 262 LHMVFSAFGPVQK-IAMFDK---N-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 262 L~~~F~~fG~I~~-v~i~~~---~-~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+.+.|+.--.|++ |.|... + ++ .|||.|...+++..|...-+-+.++.+ .|+|.-.
T Consensus 451 ~v~~f~~~~~Ved~I~lt~~P~~~~~~-~afv~F~~~~a~~~a~~~~~k~y~G~r---~irv~si 511 (944)
T KOG4307|consen 451 PVNKFMGAAAVEDFIELTRLPTDLLRP-AAFVAFIHPTAPLTASSVKTKFYPGHR---IIRVDSI 511 (944)
T ss_pred hhhhhhhhhhhhheeEeccCCcccccc-hhhheeccccccchhhhcccccccCce---EEEeech
Confidence 9999998888877 555322 2 34 499999999999999888777777776 8888753
No 126
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=1.2e-09 Score=94.98 Aligned_cols=138 Identities=18% Similarity=0.212 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC--CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~--~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l 190 (448)
+.|+|.|+ ...++||+|.++|-+.|+|.+|.|.+.+ ...+|||+|+++-+...|++.|||.++ .+..+
T Consensus 10 rtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l---------~~~e~ 79 (267)
T KOG4454|consen 10 RTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDL---------EEDEE 79 (267)
T ss_pred hHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchh---------ccchh
Confidence 45678899 6999999999999999999999998733 222699999999999999999999984 45555
Q ss_pred EEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcC
Q 013150 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 270 (448)
Q Consensus 191 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG 270 (448)
.|.+-.... -.-|+..++++.+++.|+.-|
T Consensus 80 q~~~r~G~s--------------------------------------------------hapld~r~~~ei~~~v~s~a~ 109 (267)
T KOG4454|consen 80 QRTLRCGNS--------------------------------------------------HAPLDERVTEEILYEVFSQAG 109 (267)
T ss_pred hcccccCCC--------------------------------------------------cchhhhhcchhhheeeecccC
Confidence 554322110 012566789999999999999
Q ss_pred CeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 271 PVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 271 ~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
.+..+++-.. ++.+ +||.+.-.-+.-.|+..-.+..+.-+
T Consensus 110 p~~~~R~~~~~d~rnrn~-~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 110 PIEGVRIPTDNDGRNRNF-GFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred CCCCccccccccCCccCc-cchhhhhhhcCcHHhhhhcccCcCCC
Confidence 9999988432 2334 78887776666667666666554443
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=5.1e-09 Score=108.03 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=126.7
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEE
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l 190 (448)
.|+++||+ ..+++..|+..|..+|.|.+|.|-. +...-++||.|.+...+.+|+..+.+..|. .-.+
T Consensus 374 TLf~Gnl~-~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~---------~g~~ 443 (975)
T KOG0112|consen 374 TLFLGNLD-SKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG---------NGTH 443 (975)
T ss_pred hhhhcCcc-cchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc---------cCcc
Confidence 36777995 8999999999999999999998765 333356999999999999999999998743 3344
Q ss_pred EEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcC
Q 013150 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 270 (448)
Q Consensus 191 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG 270 (448)
++.+...+. ..++.++ ++.|...+....|...|..||
T Consensus 444 r~glG~~ks-----------------------------------------t~ttr~~--sgglg~w~p~~~l~r~fd~fG 480 (975)
T KOG0112|consen 444 RIGLGQPKS-----------------------------------------TPTTRLQ--SGGLGPWSPVSRLNREFDRFG 480 (975)
T ss_pred ccccccccc-----------------------------------------ccceeec--cCCCCCCChHHHHHHHhhccC
Confidence 444433210 1355677 899999999999999999999
Q ss_pred CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 271 PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 271 ~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
.|..|.+-...- +|+|.|++...|+.|+..|-|..|++. ...|+|.|++..
T Consensus 481 pir~Idy~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~ 531 (975)
T KOG0112|consen 481 PIRIIDYRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPP 531 (975)
T ss_pred cceeeecccCCc--ceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCC
Confidence 999888766553 699999999999999999999999886 678999999765
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.76 E-value=1.5e-08 Score=99.35 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC----CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA----NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~----~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.-++.|||.+|...+-..||+.||++||+|+-.++++.. -++|+||++.+.++|.+||+.++ ...|.|+.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH----rTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH----RTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh----hhhhcceeee
Confidence 347899999999999999999999999999998886543 37999999999999999999998 7799999999
Q ss_pred Eeecccc
Q 013150 91 LQYSNRQ 97 (448)
Q Consensus 91 v~~s~~~ 97 (448)
|..+++.
T Consensus 479 VEkaKNE 485 (940)
T KOG4661|consen 479 VEKAKNE 485 (940)
T ss_pred eeecccC
Confidence 9876653
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=9.3e-09 Score=101.32 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=114.6
Q ss_pred cCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 107 ~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
+.+.++|.|+ ||| ..+++++|+.+|+.||+|..|..-..+ .+..||+|.|..+|++|+++|++++ +.
T Consensus 72 ~~~~~~L~v~--nl~-~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~---------~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVF--NLP-RSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRRE---------IA 138 (549)
T ss_pred cCccceEEEE--ecC-CcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHH---------hh
Confidence 3456777777 996 899999999999999999997665543 4689999999999999999999998 44
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
++.|+...............+--..+..+... ........-.+| +.|...++...++.+|
T Consensus 139 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~-----------------s~pgg~~~~~~~---g~l~P~~s~~~~~~~~ 198 (549)
T KOG4660|consen 139 GKRIKRPGGARRAMGLQSGTSFLNHFGSPLAN-----------------SPPGGWPRGQLF---GMLSPTRSSILLEHIS 198 (549)
T ss_pred hhhhcCCCcccccchhcccchhhhhccchhhc-----------------CCCCCCcCCcce---eeeccchhhhhhhcch
Confidence 66665222111111110000000000000000 000001111233 3388888888889999
Q ss_pred hhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 267 ~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
+.+|.+.. +.....+- +-||+|.+..++..+...+ |..+.++ ...+.|+...
T Consensus 199 ~~~~~~~~-~~~~~~~h-q~~~~~~~~~s~a~~~~~~-G~~~s~~---~~v~t~S~~~ 250 (549)
T KOG4660|consen 199 SVDGSSPG-RETPLLNH-QRFVEFADNRSYAFSEPRG-GFLISNS---SGVITFSGPG 250 (549)
T ss_pred hccCcccc-ccccchhh-hhhhhhccccchhhcccCC-ceecCCC---CceEEecCCC
Confidence 99999877 55333222 5789999998886666644 6666666 6677777663
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.2e-08 Score=93.09 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCC----eEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG----LQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g----~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
..++.++|| |..|.+-+|+|+|.-|||.||.|.++.++++.+. .+|||+|++.++.++|.=+|++..|.++
T Consensus 235 ~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr--- 309 (479)
T KOG0415|consen 235 VKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR--- 309 (479)
T ss_pred cCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc---
Confidence 346789999 5566567888999999999999999999876632 2599999999999999999999999999
Q ss_pred EEEEEEeeCCc
Q 013150 315 KLHISYSRHTD 325 (448)
Q Consensus 315 ~i~v~~ak~~~ 325 (448)
.|.|.|+..-+
T Consensus 310 RIHVDFSQSVs 320 (479)
T KOG0415|consen 310 RIHVDFSQSVS 320 (479)
T ss_pred eEEeehhhhhh
Confidence 99999986543
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.64 E-value=3.1e-09 Score=100.74 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=120.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC--CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPF--GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~f--G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
..+||+||...++..||..+|... +--..+.+. .|||||.+.+...|.+|++.+++ ...+.|+.+.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sg---k~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSG---KVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhch---hhhhcCceeeccchh
Confidence 358999999999999999999865 111222221 58999999999999999999996 889999999998877
Q ss_pred ccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec-cCCCceEEEEeCCHHHHHHHHHHhCCC
Q 013150 96 RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGR 174 (448)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~-~~~~~~afVeF~~~e~A~~A~~~l~g~ 174 (448)
.+..... .+-|+|+| ...-+|.|..|..+||.|++|.... .......-|+|.+.+.+..|+..|+|.
T Consensus 75 ~kkqrsr-----------k~Qirnip-pql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 75 PKKQRSR-----------KIQIRNIP-PQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hHHHHhh-----------hhhHhcCC-HHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 6654322 24566997 8899999999999999999885433 333333567899999999999999998
Q ss_pred CCCCcCCCCCCCCeEEEEEecCC
Q 013150 175 SIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 175 ~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
. +....++|.|-..
T Consensus 143 Q---------~en~~~k~~YiPd 156 (584)
T KOG2193|consen 143 Q---------LENQHLKVGYIPD 156 (584)
T ss_pred H---------hhhhhhhcccCch
Confidence 8 6677788877543
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.62 E-value=4.8e-08 Score=96.15 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=63.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee--c--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN--V--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~--~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
..+|||+|||.++|+++|+++|+.||.|+...|. . +++.+||||+|.+.++++.||.+- .+.|++++|.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-----p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-----PLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-----ccccCCeeEEEE
Confidence 4559999999999999999999999999887772 2 445599999999999999999984 779999999997
Q ss_pred e
Q 013150 93 Y 93 (448)
Q Consensus 93 ~ 93 (448)
-
T Consensus 363 e 363 (419)
T KOG0116|consen 363 E 363 (419)
T ss_pred e
Confidence 3
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.5e-09 Score=107.99 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=114.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
..++||+||+..+.+.||...|..+|.+..+.+ .+++-||+|||+|...++|.+||....+ .+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-----~~~g------ 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-----CFFG------ 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-----hhhh------
Confidence 356899999999999999999999999877766 4677899999999999999999998663 1222
Q ss_pred eccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHH
Q 013150 93 YSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKN 169 (448)
Q Consensus 93 ~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~ 169 (448)
...++|.|.| ..-|.+.|+.+|+.+|.+.++.++. ++.+|.|||.|.++.+|.+++.
T Consensus 736 -------------------K~~v~i~g~p-f~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 736 -------------------KISVAISGPP-FQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred -------------------hhhhheeCCC-CCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcc
Confidence 1236677997 8899999999999999998886554 4567889999999999999998
Q ss_pred HhCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 170 ALDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 170 ~l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
..+... +..+-+.|+.++.
T Consensus 796 s~d~~~---------~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 796 SVDVAG---------KRENNGEVQVSNP 814 (881)
T ss_pred cchhhh---------hhhcCccccccCC
Confidence 887766 4455556665543
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=2e-07 Score=85.03 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
.+..|+|.|||..|+++||++||.+||.++.+.+ ..|++.|.|-|.|...+||.+|++.++ ++.++|+.+.+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~----gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYN----GVALDGRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhc----CcccCCceeeeE
Confidence 3467999999999999999999999999888887 567888999999999999999999999 689999998887
Q ss_pred ecc
Q 013150 93 YSN 95 (448)
Q Consensus 93 ~s~ 95 (448)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 543
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.51 E-value=1.8e-07 Score=88.55 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=123.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
...++|++++-..+.+.++..++.+.|.+...... ...++++++|.|...+.+..||.... ...+.++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~----~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG----SKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhh----ccccccccccC
Confidence 36789999999999999999999999987666653 34579999999999999999999876 33455555544
Q ss_pred eecccccccc-CCccccCCCC-eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHH
Q 013150 92 QYSNRQEIVN-NKTTADVAGN-VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETAS 165 (448)
Q Consensus 92 ~~s~~~~~~~-~~~~~~~~~~-~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~ 165 (448)
...+...... .......... ....+|+||+ ..+++++|+..|..+|.|..+.+... ...++|||+|.+..++.
T Consensus 163 dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~-f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 163 DLNTRRGLRPKNKLSRLSSGPSDTIFFVGELD-FSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred cccccccccccchhcccccCccccceeecccc-cccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 4333322110 0000000111 1223377995 89999999999999999999988773 34567899999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.|+.. .... +.++++.+.+....
T Consensus 242 ~~~~~-~~~~---------~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 242 LALND-QTRS---------IGGRPLRLEEDEPR 264 (285)
T ss_pred HHhhc-ccCc---------ccCcccccccCCCC
Confidence 99887 6666 77888999887643
No 136
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.50 E-value=2.8e-06 Score=79.10 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcC--CeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG--~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
..++.+++||+||-..+|+++|.+....-| .|.++|++.++ +|| |+|-..+..+..+-++.|--..|.|.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ-- 152 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQ-- 152 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCC--
Confidence 346778888999988888999988887776 56677776543 566 99999999999999999999999887
Q ss_pred eEEEEEEeeCCc
Q 013150 314 CKLHISYSRHTD 325 (448)
Q Consensus 314 ~~i~v~~ak~~~ 325 (448)
....++|-|...
T Consensus 153 ~P~V~~~NK~~~ 164 (498)
T KOG4849|consen 153 SPTVLSYNKTNQ 164 (498)
T ss_pred CCeeeccchhhH
Confidence 466677766543
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.46 E-value=9.2e-07 Score=65.62 Aligned_cols=68 Identities=22% Similarity=0.438 Sum_probs=46.5
Q ss_pred EEEeCCCccCCHH----HHHHHHhhcC-CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 248 ASIENMQYAVTLD----VLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 248 v~v~nl~~~vt~~----~L~~~F~~fG-~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
++|.|||.+.+-. .|++++..+| .|.+|. ++ .|+|.|.+.+.|.+|.+-|+|..++|. +|.|+|.+
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~-tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~~~ 75 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GG-TAILRFPNQEFAERAQKRMEGEDVFGN---KISVSFSP 75 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT--EEEEESSHHHHHHHHHHHTT--SSSS-----EEESS-
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CC-EEEEEeCCHHHHHHHHHhhcccccccc---eEEEEEcC
Confidence 3488999988865 5778888887 455542 23 599999999999999999999999999 99999985
Q ss_pred CC
Q 013150 323 HT 324 (448)
Q Consensus 323 ~~ 324 (448)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 54
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=3.5e-06 Score=82.76 Aligned_cols=156 Identities=16% Similarity=0.194 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec-------cCCCc---eEEEEeCCHHHHHHHHHHhCCCCCCCcCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE-------KTAGF---QALVQFSDTETASSAKNALDGRSIPRYLL 181 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~-------~~~~~---~afVeF~~~e~A~~A~~~l~g~~~~~~~~ 181 (448)
...|+|++|| ..++|+.|...|..||.+. |.... -..+| |+|+-|+++.+...-+.++.-
T Consensus 259 S~KVFvGGlp-~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-------- 328 (520)
T KOG0129|consen 259 SRKVFVGGLP-WDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-------- 328 (520)
T ss_pred ccceeecCCC-ccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh--------
Confidence 4569999997 8999999999999999873 22221 11234 999999999999988887763
Q ss_pred CCCCCCeEEEEEecC--CCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCH
Q 013150 182 PENMGPCTLRITYSA--HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTL 259 (448)
Q Consensus 182 ~~~~~~~~l~v~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~ 259 (448)
+...+.+..+. .+...++.. .....+..... +......+.+++| |+.||--++-
T Consensus 329 ----~~~~~yf~vss~~~k~k~VQIr---PW~laDs~fv~---------------d~sq~lDprrTVF--VGgvprpl~A 384 (520)
T KOG0129|consen 329 ----GEGNYYFKVSSPTIKDKEVQIR---PWVLADSDFVL---------------DHNQPIDPRRTVF--VGGLPRPLTA 384 (520)
T ss_pred ----cccceEEEEecCcccccceeEE---eeEeccchhhh---------------ccCcccCccceEE--ecCCCCcchH
Confidence 23333333333 222211100 00000000000 0111223577888 9999999999
Q ss_pred HHHHHHHh-hcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHH
Q 013150 260 DVLHMVFS-AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 302 (448)
Q Consensus 260 ~~L~~~F~-~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~ 302 (448)
++|..+|+ .||.|..+-|-.+ .+|- |=|.|++..+=.+||++
T Consensus 385 ~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 385 EELAMIMEDLFGGVLYVGIDTDPKLKYPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHHhcCceEEEEeccCcccCCCCCc-ceeeecccHHHHHHHhh
Confidence 99999999 8999999988443 2565 89999999999999875
No 139
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.43 E-value=6.3e-07 Score=77.91 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=62.9
Q ss_pred EEEeCCCccCCHHHHHHHHhhc-CCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 248 ASIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~f-G~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+++..++.-+.+.+|...|.+| |.|.++++-+++ +|| |||+|++.+.|.-|-+.||++.++++ .|.+.|-
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgY-AFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vm 127 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGY-AFVEFESEEVAKIAAETMNNYLLMEH---LLECHVM 127 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCce-EEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEe
Confidence 3488999999999999999999 677777774433 455 99999999999999999999999999 9999997
Q ss_pred eCC
Q 013150 322 RHT 324 (448)
Q Consensus 322 k~~ 324 (448)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 766
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.41 E-value=7.8e-07 Score=87.64 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCC--C--eEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--G--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~--g--~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.+.+|+ |.+|...+--.+|..||++||.|+-.+++.+-+ | +++||++++.++|.+||+.|+-+.|.|+ .|.
T Consensus 404 ~gRNlW--VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mIS 478 (940)
T KOG4661|consen 404 LGRNLW--VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MIS 478 (940)
T ss_pred ccccee--eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eee
Confidence 456788 779977777889999999999999999966432 2 4699999999999999999999999999 999
Q ss_pred EEEeeCC
Q 013150 318 ISYSRHT 324 (448)
Q Consensus 318 v~~ak~~ 324 (448)
|+-+|..
T Consensus 479 VEkaKNE 485 (940)
T KOG4661|consen 479 VEKAKNE 485 (940)
T ss_pred eeecccC
Confidence 9998765
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.39 E-value=2.4e-07 Score=82.71 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=62.1
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
|+++.|..+|++|.|...|.+|-.....++++++ +|+ +||.|.+.+++..|+..|||..++.+ .|++.-+-
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgy-gfVSf~~pad~~rAmrem~gkyVgsr---piklRkS~ 268 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGY-GFVSFRDPADYVRAMREMNGKYVGSR---PIKLRKSE 268 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccc-eeeeecCHHHHHHHHHhhcccccccc---hhHhhhhh
Confidence 3388888899999999999999998888887654 465 99999999999999999999999998 77665544
Q ss_pred CC
Q 013150 323 HT 324 (448)
Q Consensus 323 ~~ 324 (448)
.+
T Consensus 269 wk 270 (290)
T KOG0226|consen 269 WK 270 (290)
T ss_pred HH
Confidence 33
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.37 E-value=6.1e-07 Score=90.67 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCc
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~ 312 (448)
.+.+++|+ ++||+..|+++.|...|..||.|.+|+|+-.. .-.||||.|-+..+|++|++.|||..+++.
T Consensus 171 DP~TTNly--v~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~- 247 (877)
T KOG0151|consen 171 DPQTTNLY--VGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY- 247 (877)
T ss_pred CCccccee--eecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-
Confidence 45677888 88999999999999999999999999995321 123799999999999999999999999998
Q ss_pred eeEEEEEEeeCCcc
Q 013150 313 FCKLHISYSRHTDL 326 (448)
Q Consensus 313 ~~~i~v~~ak~~~~ 326 (448)
.+++-|+|.-.+
T Consensus 248 --e~K~gWgk~V~i 259 (877)
T KOG0151|consen 248 --EMKLGWGKAVPI 259 (877)
T ss_pred --eeeecccccccc
Confidence 999999977543
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=2.7e-06 Score=83.88 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=60.6
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
|+|.|||.++++++|+++|+.||.|+...|..++ .+++|||+|.+.+++..||++- =..|+++ +|.|+-.+.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~---kl~Veek~~ 366 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR---KLNVEEKRP 366 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe---eEEEEeccc
Confidence 4499999999999999999999999999884432 2246999999999999999976 5566666 999987655
Q ss_pred Cc
Q 013150 324 TD 325 (448)
Q Consensus 324 ~~ 325 (448)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.34 E-value=2.3e-06 Score=63.55 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=48.4
Q ss_pred cEEEEcCCCCCCCHHHHHH----hhcCC-CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 18 KVLHLRNLPWECTEEELIE----LGKPF-GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~----~F~~f-G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
..|+|.|||.+.+...|+. |+..+ |+|.+|. .+.|+|.|.+.+.|++|.+.|+ +..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRme----gEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRME----GEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHT----T--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhc----ccccccceEEEE
Confidence 3699999999999887764 66677 7877653 5889999999999999999998 678999999999
Q ss_pred ecccc
Q 013150 93 YSNRQ 97 (448)
Q Consensus 93 ~s~~~ 97 (448)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.32 E-value=6.8e-07 Score=79.91 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=112.3
Q ss_pred cEEEEcCCCCCCCHHH-H--HHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 18 KVLHLRNLPWECTEEE-L--IELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~-L--~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
-..+++++-.++..+- | ...|+.+=.+...+++. +.-++++|+.|.....-.++-..-+ +..++-++|++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~----~Kki~~~~VR~ 172 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKE----KKKIGKPPVRL 172 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccc----cccccCcceee
Confidence 3366677666665555 3 45666665554444432 3347899999976665555544333 34455555444
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSA 167 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A 167 (448)
.-...-+ +....++......||.+.| ...+++|.|...|.+|-.....++++ .++++++||.|.+.+|+.+|
T Consensus 173 a~gtswe---dPsl~ew~~~DfRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 173 AAGTSWE---DPSLAEWDEDDFRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ccccccC---CcccccCccccceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 3211111 1222345566778999899 58899999999999998887777776 55778999999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
++.|+|+. ++.++|+...+.-+
T Consensus 249 mrem~gky---------VgsrpiklRkS~wk 270 (290)
T KOG0226|consen 249 MREMNGKY---------VGSRPIKLRKSEWK 270 (290)
T ss_pred HHhhcccc---------cccchhHhhhhhHH
Confidence 99999998 88999888766533
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=1.7e-07 Score=89.16 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=118.9
Q ss_pred EEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEe
Q 013150 115 VTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 194 (448)
Q Consensus 115 v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~ 194 (448)
++++|| .+.++..+|..+|...-.-.+-.++-+. +|+||...+..-|.+|++.++|+.- +.|+.+.+.+
T Consensus 4 lyignL-~p~~~psdl~svfg~ak~~~~g~fl~k~--gyafvd~pdq~wa~kaie~~sgk~e--------lqGkr~e~~~ 72 (584)
T KOG2193|consen 4 LYIGNL-SPQVTPSDLESVFGDAKIPGSGQFLVKS--GYAFVDCPDQQWANKAIETLSGKVE--------LQGKRQEVEH 72 (584)
T ss_pred cccccc-CCCCChHHHHHHhccccCCCCcceeeec--ceeeccCCchhhhhhhHHhhchhhh--------hcCceeeccc
Confidence 578899 5999999999999654211111222233 7999999999999999999999742 7799999988
Q ss_pred cCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE
Q 013150 195 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274 (448)
Q Consensus 195 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~ 274 (448)
+-.+... ++.+- +.|++.....+.|..+...||.|+.
T Consensus 73 sv~kkqr-----------------------------------------srk~Q--irnippql~wevld~Ll~qyg~ve~ 109 (584)
T KOG2193|consen 73 SVPKKQR-----------------------------------------SRKIQ--IRNIPPQLQWEVLDSLLAQYGTVEN 109 (584)
T ss_pred hhhHHHH-----------------------------------------hhhhh--HhcCCHHHHHHHHHHHHhccCCHhH
Confidence 7655432 22233 8899999999999999999999999
Q ss_pred EEEEc-cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 275 IAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 275 v~i~~-~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
+..+. ....-..-|+|.+.+.+..||..|||..+.+. .++|.|-.+..
T Consensus 110 ~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPdeq 158 (584)
T KOG2193|consen 110 CEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPDEQ 158 (584)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCchhh
Confidence 86633 33211234789999999999999999999998 99999976554
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.27 E-value=1.5e-06 Score=87.91 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe-------ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-------NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i-------~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
+....|||+||+..++|+.|...|..||.|.+|+| .+.+.+.+|||-|-+..+|++|++.++ ++.+.+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq----g~iv~~~ 247 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ----GIIVMEY 247 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc----ceeeeee
Confidence 34566999999999999999999999999999999 234568999999999999999999999 7889999
Q ss_pred EEEEeeccccc
Q 013150 88 TVYLQYSNRQE 98 (448)
Q Consensus 88 ~i~v~~s~~~~ 98 (448)
.+++.|++.-.
T Consensus 248 e~K~gWgk~V~ 258 (877)
T KOG0151|consen 248 EMKLGWGKAVP 258 (877)
T ss_pred eeeeccccccc
Confidence 99999986543
No 148
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.27 E-value=8.8e-07 Score=83.82 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
....+++++ ...+.+.....++..+|.+....+.. ...++.++|.|...+.+..|+....... +.+
T Consensus 88 ~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~---------~~~ 157 (285)
T KOG4210|consen 88 SSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKV---------LDG 157 (285)
T ss_pred ccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccc---------ccc
Confidence 455778899 48888888888899999877665544 3355779999999999999999554333 334
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHh
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 267 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~ 267 (448)
+.+.........+... + ...+ .........++ +.+++.++++++|+..|.
T Consensus 158 ~~~~~dl~~~~~~~~~--n-~~~~-------------------------~~~~~s~~~~~--~~~~~f~~~~d~~~~~~~ 207 (285)
T KOG4210|consen 158 NKGEKDLNTRRGLRPK--N-KLSR-------------------------LSSGPSDTIFF--VGELDFSLTRDDLKEHFV 207 (285)
T ss_pred ccccCccccccccccc--c-hhcc-------------------------cccCcccccee--ecccccccchHHHhhhcc
Confidence 4444333322111000 0 0000 00112234455 889999999999999999
Q ss_pred hcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 268 AFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 268 ~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
.+|.|..+++.... .|+ |+|+|.+...+..|+.. +...+++. ++++.+.+..
T Consensus 208 ~~~~i~~~r~~~~~~s~~~kg~-a~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~ 264 (285)
T KOG4210|consen 208 SSGEITSVRLPTDEESGDSKGF-AYVDFSAGNSKKLALND-QTRSIGGR---PLRLEEDEPR 264 (285)
T ss_pred CcCcceeeccCCCCCccchhhh-hhhhhhhchhHHHHhhc-ccCcccCc---ccccccCCCC
Confidence 99999999984432 455 99999999999999998 88888888 9999987665
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.21 E-value=8e-06 Score=63.82 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=49.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC--CceEEEEe----ecCCCcceEEEEecCHHHHHHHHHHhhc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPF--GKVVNTKC----NVGANRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~f--G~I~~v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
.||.|+|||...|.++|.+++.+. |...-+-+ .++.+.|||||.|.+.+.|.+..+.+++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 479999999999999999988754 55433333 4556799999999999999999999985
No 150
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.19 E-value=6.1e-06 Score=75.37 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=64.6
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCC---eEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g---~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
.-|+|.||++.|++++|.++|..||.+.++-+.-+..| .+|-|.|...++|.+|++.+||..+.|+ .|++....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i~ 160 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR---PMKIEIIS 160 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc---eeeeEEec
Confidence 33558999999999999999999999998888433322 3699999999999999999999999999 88888765
Q ss_pred CCc
Q 013150 323 HTD 325 (448)
Q Consensus 323 ~~~ 325 (448)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=5.8e-06 Score=66.15 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
.+|+|.++..+++-++|+++|+.||.|..|.+..| ...|||.|.+.++|++|++.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G--~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG--DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC--CCEEEEEECCcchHHHHHHHHHh
Confidence 57999999999999999999999999999998876 56799999999999999998873
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=4.8e-06 Score=76.21 Aligned_cols=79 Identities=10% Similarity=0.161 Sum_probs=67.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
.....+.|||+|+...+|.+++...|+.||.|..|.+. .+..||||||+|.+.+.+++|+. ++ +..|.|+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~----gs~i~~~~ 171 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD----GSEIPGPA 171 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC----Cccccccc
Confidence 44567899999999999999999999999999876663 34468999999999999999999 76 55899999
Q ss_pred EEEeeccc
Q 013150 89 VYLQYSNR 96 (448)
Q Consensus 89 i~v~~s~~ 96 (448)
+.|.+..-
T Consensus 172 i~vt~~r~ 179 (231)
T KOG4209|consen 172 IEVTLKRT 179 (231)
T ss_pred ceeeeeee
Confidence 99876543
No 153
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=1.5e-05 Score=81.62 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=11.0
Q ss_pred CCCHHHHHHhhcCCCce
Q 013150 28 ECTEEELIELGKPFGKV 44 (448)
Q Consensus 28 ~~te~~L~~~F~~fG~I 44 (448)
+++++++-++|..-|+=
T Consensus 82 ~ls~~e~~~~F~~~~~d 98 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMGED 98 (1102)
T ss_pred hccHHHHHHHHHHHhhh
Confidence 46667777777766553
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=3.5e-05 Score=61.65 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=38.9
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCC
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 306 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~ 306 (448)
+|. +.++...++-++|+++|+.||.|..|.+.+... .|+|.|.+.++|++|++.+.-.
T Consensus 3 il~--~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILK--FSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEE--EEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEE--EecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 455 777889999999999999999999999887665 6999999999999999888754
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.85 E-value=3.1e-05 Score=70.98 Aligned_cols=75 Identities=17% Similarity=0.388 Sum_probs=65.2
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.+.++ ++|++..+|.+++...|+.||.|..|.+..++ +|+ |||+|.+.+.+.+|+. |||..|.+. .|.
T Consensus 101 ~~sv~--v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~-~yvef~~~~~~~~ay~-l~gs~i~~~---~i~ 173 (231)
T KOG4209|consen 101 APSVW--VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGF-AYVEFSSYELVEEAYK-LDGSEIPGP---AIE 173 (231)
T ss_pred CceEE--EeccccccccchhhheeeccCCccceeeeccccCCCccee-EEEecccHhhhHHHhh-cCCcccccc---cce
Confidence 44566 89999999999999999999999888774332 456 9999999999999999 999999999 999
Q ss_pred EEEeeCC
Q 013150 318 ISYSRHT 324 (448)
Q Consensus 318 v~~ak~~ 324 (448)
|++.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9997765
No 156
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.79 E-value=0.00014 Score=74.90 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 013150 161 TETASSAKNAL 171 (448)
Q Consensus 161 ~e~A~~A~~~l 171 (448)
..++.+|++++
T Consensus 209 ~~eiIrClka~ 219 (1102)
T KOG1924|consen 209 LQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=4.5e-05 Score=52.77 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=43.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHH
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMI 72 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al 72 (448)
++.|-|.+.+.+..+ +++..|..||+|.++.+- ..+...||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 467889999887765 455588899999998865 34789999999999999986
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=0.0018 Score=60.76 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCCeEEEEEcCCCCCCCcHHHHHHHhcccC--ceEEEEEec----cCCCceEEEEeCCHHHHHHHHHHhCCCC
Q 013150 109 AGNVLLVTIEGTDARLVSIDVLHLVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 109 ~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G--~v~~v~~~~----~~~~~~afVeF~~~e~A~~A~~~l~g~~ 175 (448)
..+.+.+||+||- ..+|+++|.+.....| .+.+++++. +.++|+|+|...+.....+.++.|-.++
T Consensus 77 ~Grk~~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 77 EGRKYCCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred cCceEEEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 4577889999996 5555555444544444 445666665 4477899999999999888888877666
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.63 E-value=7.6e-05 Score=71.78 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=58.1
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---------CCC--------cceEEEEecCHHHHHH
Q 013150 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---------GAN--------RNQAFIEFADLNQAIA 70 (448)
Q Consensus 8 ~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---------~~~--------kg~afVeF~~~e~A~~ 70 (448)
+.+.-..-+|++|.+-|||.+-.-+.|.++|..+|.|.+|+|.+ +.. +-+|+|||...+.|.+
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 34444455899999999999999999999999999999999932 111 4569999999999999
Q ss_pred HHHHhh
Q 013150 71 MISYYA 76 (448)
Q Consensus 71 Al~~~~ 76 (448)
|.+.++
T Consensus 302 A~e~~~ 307 (484)
T KOG1855|consen 302 ARELLN 307 (484)
T ss_pred HHHhhc
Confidence 999987
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00026 Score=55.77 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=51.0
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEE-------------EEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~-------------i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
|+|.+.|.. ....+.+.|++||+|++.. +....+ +.-|+|++..+|.+|+. -||..|.|. +
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~N--Wi~I~Y~~~~~A~rAL~-~NG~i~~g~--~ 82 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGN--WIHITYDNPLSAQRALQ-KNGTIFSGS--L 82 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTT--EEEEEESSHHHHHHHHT-TTTEEETTC--E
T ss_pred EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCC--EEEEECCCHHHHHHHHH-hCCeEEcCc--E
Confidence 557788766 6677888899999998885 333333 68999999999999998 899998886 5
Q ss_pred EEEEEEeeC
Q 013150 315 KLHISYSRH 323 (448)
Q Consensus 315 ~i~v~~ak~ 323 (448)
-+-|.+.+.
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 677888754
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.53 E-value=6.3e-05 Score=71.41 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=103.8
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc-------CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~-------~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
.|.|.|| ...++.|.++.||...|+|..+.++.. .....|||.|.+...+..|-. |.+.. +-
T Consensus 9 vIqvani-spsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntv---------fv 77 (479)
T KOG4676|consen 9 VIQVANI-SPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTV---------FV 77 (479)
T ss_pred eeeeccc-CchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccce---------ee
Confidence 4566799 589999999999999999999987761 112349999999999888765 55444 23
Q ss_pred CeEEE-EEecCCCcc-ccccc-----ccCCcCCCCCC-CCCCCCccCccC--------CccccCCCC--CCCCCCcEEEE
Q 013150 187 PCTLR-ITYSAHTDL-SVKFQ-----SHRSRDYTNPY-LPVAPSAIDASG--------QLSVGLDGK--KLEPESNVLLA 248 (448)
Q Consensus 187 ~~~l~-v~~s~~~~~-~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~l~v 248 (448)
++.|. +-|...-.- ..-.+ +...+. ..+. ...........| .+.+.+.-. .......++.
T Consensus 78 draliv~p~~~~~~p~r~af~~l~~~navprl-l~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~- 155 (479)
T KOG4676|consen 78 DRALIVRPYGDEVIPDRFAFVELADQNAVPRL-LPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTRE- 155 (479)
T ss_pred eeeEEEEecCCCCCccHHHHHhcCcccccccc-cCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhh-
Confidence 44444 444432110 00000 000000 0000 000000000000 001111000 0011223455
Q ss_pred EEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCcc
Q 013150 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 308 (448)
Q Consensus 249 ~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l 308 (448)
+.+|...+..+++-+.|..+|+|...++-.+....++-|+|....+...|+. ++|+.+
T Consensus 156 -v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 156 -VQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred -hhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 8899999999999999999999988877444433236699998888888887 555543
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.41 E-value=0.00024 Score=65.10 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 259 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 259 ~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
++++.+.|.+||.|.+|.|+... .-..-||+|...++|.+|+-.|||++|+|+ .++..|....+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr---~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR---VVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---eeeheeccHHh
Confidence 35778899999999999986543 223489999999999999999999999999 99888865544
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.40 E-value=0.00013 Score=70.29 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=53.7
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----C-----C-------CeEEEEEcCCHHHHHHHHHHhc
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----N-----G-------GLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~-----~-------g~~afV~f~~~e~A~~Ai~~ln 304 (448)
++.+|. +.|||.+-..+.|.+||+.+|.|..|+|... + + .-||||+|+..+.|.+|.+.||
T Consensus 230 ~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 577788 7899999889999999999999999999543 0 1 1379999999999999999997
Q ss_pred CCc
Q 013150 305 GHC 307 (448)
Q Consensus 305 g~~ 307 (448)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.36 E-value=0.00041 Score=47.96 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=38.3
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHH
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 300 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai 300 (448)
|.|.+.+.+ ..+.++..|..||+|+++.+-.+.+ ..+|+|.+..+|++|+
T Consensus 4 I~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPD-LAEEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECch-HHHHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 336666433 3456677999999999988874443 6999999999999985
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00046 Score=64.41 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=60.5
Q ss_pred EEEEeCCCccCCHHH----H--HHHHhhcCCeeEEEEEccC------CC-eEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 247 LASIENMQYAVTLDV----L--HMVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 247 ~v~v~nl~~~vt~~~----L--~~~F~~fG~I~~v~i~~~~------~g-~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
+|||.+|+..|-.|+ | .+.|.+||.|.+|.+-++- .+ .-.||.|.+.|+|.+||...+|..++|+
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr-- 193 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR-- 193 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc--
Confidence 356888888886665 3 4789999999999885432 12 1149999999999999999999999999
Q ss_pred eEEEEEEeeCC
Q 013150 314 CKLHISYSRHT 324 (448)
Q Consensus 314 ~~i~v~~ak~~ 324 (448)
.|+..|...+
T Consensus 194 -~lkatYGTTK 203 (480)
T COG5175 194 -VLKATYGTTK 203 (480)
T ss_pred -eEeeecCchH
Confidence 9999997544
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.31 E-value=0.0006 Score=63.65 Aligned_cols=75 Identities=25% Similarity=0.423 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCcHH---HH--HHHhcccCceEEEEEeccCC-----Cce--EEEEeCCHHHHHHHHHHhCCCCCCCcCCC
Q 013150 115 VTIEGTDARLVSID---VL--HLVFSAFGFVHKITTFEKTA-----GFQ--ALVQFSDTETASSAKNALDGRSIPRYLLP 182 (448)
Q Consensus 115 v~V~nlp~~~~~~e---~l--~~~f~~~G~v~~v~~~~~~~-----~~~--afVeF~~~e~A~~A~~~l~g~~~~~~~~~ 182 (448)
|||-+|+....+|| .| .+.|.+||.|.+|.+.++.+ .+. .||+|.+.|||.+||...+|.-
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~------- 189 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL------- 189 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc-------
Confidence 67779975556666 33 47899999999999887431 111 4999999999999999999987
Q ss_pred CCCCCeEEEEEecCCC
Q 013150 183 ENMGPCTLRITYSAHT 198 (448)
Q Consensus 183 ~~~~~~~l~v~~s~~~ 198 (448)
+.|+.|+..|...+
T Consensus 190 --~DGr~lkatYGTTK 203 (480)
T COG5175 190 --LDGRVLKATYGTTK 203 (480)
T ss_pred --ccCceEeeecCchH
Confidence 78999999887643
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.23 E-value=0.0016 Score=54.51 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCCcEEEEEEeC--CCc--cCCH---HHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCc
Q 013150 240 EPESNVLLASIEN--MQY--AVTL---DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312 (448)
Q Consensus 240 ~~~~~~l~v~v~n--l~~--~vt~---~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~ 312 (448)
+++..++.|++.+ .+. ..++ ++|.+.|+.||+|+=||+... .-+|.|.+-++|.+|+. |+|..+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~- 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR- 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE-
Confidence 3557778888877 111 1222 467888999999998888864 38999999999999998 999999998
Q ss_pred eeEEEEEEeeCCc
Q 013150 313 FCKLHISYSRHTD 325 (448)
Q Consensus 313 ~~~i~v~~ak~~~ 325 (448)
.|+|++..+.-
T Consensus 98 --~l~i~LKtpdW 108 (146)
T PF08952_consen 98 --TLKIRLKTPDW 108 (146)
T ss_dssp --EEEEEE-----
T ss_pred --EEEEEeCCccH
Confidence 99999866553
No 168
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.23 E-value=0.0027 Score=49.70 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=55.8
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhc--CCee--EEEE-Ec--cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCC-ceeE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAF--GPVQ--KIAM-FD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-GFCK 315 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~f--G~I~--~v~i-~~--~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~-~~~~ 315 (448)
++|- +.|+|...|.++|.+++... |... .+.+ +. -+.|+ |||.|.+.+.|.+-.+.++|...... +...
T Consensus 2 TTvM--irNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GY-AFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVM--IRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGY-AFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEE--EecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEE-EEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 3455 89999999999999887654 3332 2223 11 12455 99999999999999999999987532 2246
Q ss_pred EEEEEeeCC
Q 013150 316 LHISYSRHT 324 (448)
Q Consensus 316 i~v~~ak~~ 324 (448)
..|.||+-.
T Consensus 79 c~i~yAriQ 87 (97)
T PF04059_consen 79 CEISYARIQ 87 (97)
T ss_pred EEEehhHhh
Confidence 788888653
No 169
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.16 E-value=0.00028 Score=67.17 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=103.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec--CC-----CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV--GA-----NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~--~~-----~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.+|.|.||.+++|.+++..||...|+|.++.+.. +. ....|||.|.|...+.-|-..-| .+.++--.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn----tvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN----TVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc----ceeeeeeEEE
Confidence 4899999999999999999999999999998842 11 24689999999998877755544 3444444444
Q ss_pred Eeeccccccc--------c----------C-C------c--cccCCC-------------------CeEEEEEcCCCCCC
Q 013150 91 LQYSNRQEIV--------N----------N-K------T--TADVAG-------------------NVLLVTIEGTDARL 124 (448)
Q Consensus 91 v~~s~~~~~~--------~----------~-~------~--~~~~~~-------------------~~~~v~V~nlp~~~ 124 (448)
+-|.....-. . + . . .+..+. -...++|.+|+ ..
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~-~~ 162 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLI-SA 162 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcch-hh
Confidence 4343221100 0 0 0 0 000000 00125566886 66
Q ss_pred CcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCC
Q 013150 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 125 ~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~ 175 (448)
+...++-++|..+|.|....+..+....+|-|+|....+...|+. ++|++
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchh
Confidence 667777779999999988877776666678899999999888888 55554
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.11 E-value=0.00037 Score=65.98 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=65.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEe----ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVN--------TKC----NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV 84 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--------v~i----~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~ 84 (448)
..+|||-+||..+++++|.++|.++|+|.. |+| .+++.|+-|.|.|.+...|+.||..++ ...+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a----gkdf 141 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA----GKDF 141 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc----cccc
Confidence 457999999999999999999999999843 233 456779999999999999999999998 5688
Q ss_pred eCcEEEEeecccc
Q 013150 85 RGKTVYLQYSNRQ 97 (448)
Q Consensus 85 ~g~~i~v~~s~~~ 97 (448)
.|..|+|.++..+
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 8888888766544
No 171
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.09 E-value=0.00066 Score=64.34 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=62.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEE--------EEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccC
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI--------AMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIY 309 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v--------~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~ 309 (448)
+.++| |.+|+..+++++|.+.|.++|.|..- +|.+++ +|- |.|.|+|...|+.||..+++..+.
T Consensus 66 ~~ti~--v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGe-atvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIF--VWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGE-ATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccce--eeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCc-eeeeecChhhhhhhhhhhcccccc
Confidence 34455 77888899999999999999988643 222221 354 999999999999999999999999
Q ss_pred CCceeEEEEEEeeCCc
Q 013150 310 DGGFCKLHISYSRHTD 325 (448)
Q Consensus 310 g~~~~~i~v~~ak~~~ 325 (448)
+. +|+|.++....
T Consensus 143 gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN---TIKVSLAERRT 155 (351)
T ss_pred CC---Cchhhhhhhcc
Confidence 98 99999987654
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=0.0017 Score=58.68 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCC
Q 013150 160 DTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKL 239 (448)
Q Consensus 160 ~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (448)
+..-|..|...|++.- ..++.++|.|+.++
T Consensus 3 ~rt~ae~ak~eLd~~~---------~~~~~lr~rfa~~a----------------------------------------- 32 (275)
T KOG0115|consen 3 PRTLAEIAKRELDGRF---------PKGRSLRVRFAMHA----------------------------------------- 32 (275)
T ss_pred cccHHHHHHHhcCCCC---------CCCCceEEEeeccc-----------------------------------------
Confidence 3445778888999987 77999999998653
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCC
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGH 306 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~ 306 (448)
.|+ |.||..-++.|.|++.|+.||.|.+..+.-+. .+.-++|+|...-.|.+|...++-.
T Consensus 33 -----~l~--V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 33 -----ELY--VVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred -----eEE--EEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 244 88999999999999999999999887663322 2224899999999999999988543
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0023 Score=63.94 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCCCcHH-------HHHHHhcccCceEEEEEec---cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCC
Q 013150 113 LLVTIEGTDARLVSID-------VLHLVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e-------~l~~~f~~~G~v~~v~~~~---~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~ 182 (448)
-.|.|.|.| .+..+ .|..+|+++|+|.++.+.- +..+|+.|+||.+..+|+.|++.|||..+
T Consensus 59 ~vVvv~g~P--vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l------ 130 (698)
T KOG2314|consen 59 SVVVVDGAP--VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL------ 130 (698)
T ss_pred eEEEECCCc--ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee------
Confidence 457778986 44443 3567799999999998874 44678899999999999999999999986
Q ss_pred CCCCCeEEEEE
Q 013150 183 ENMGPCTLRIT 193 (448)
Q Consensus 183 ~~~~~~~l~v~ 193 (448)
...++..|.
T Consensus 131 --dknHtf~v~ 139 (698)
T KOG2314|consen 131 --DKNHTFFVR 139 (698)
T ss_pred --cccceEEee
Confidence 456666664
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.95 E-value=0.0045 Score=46.26 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
-+.||+ .|......||.++|+.||.|. |..+.. ..|||...+.+.|..+++.+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 446777 999999999999999999987 444443 559999999999999998876
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.94 E-value=0.00052 Score=62.11 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=49.4
Q ss_pred HHHHHHHh-hcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 260 DVLHMVFS-AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 260 ~~L~~~F~-~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
|+|...|+ +||+|++++|-.+- .| +++|+|...|+|++|++.|||..+.|+ +|..+|+.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcC
Confidence 44555555 99999999773322 23 499999999999999999999999999 9999997654
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.91 E-value=0.0017 Score=59.72 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=51.2
Q ss_pred HHHHHHhcccCceEEEEEeccC-----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 128 DVLHLVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 128 e~l~~~f~~~G~v~~v~~~~~~-----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
+++++-+++||.|.+|.|+... ..-.-||+|+..++|.+|+-.|||+. ++|+.++..|.+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy---------FGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY---------FGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce---------ecceeeeheeccHH
Confidence 3577789999999999988722 11238999999999999999999998 89999998887644
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.0018 Score=58.52 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=68.7
Q ss_pred HHHHHHHhhcCCCCceeeCcEEEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec
Q 013150 68 AIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE 147 (448)
Q Consensus 68 A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~ 147 (448)
|+.|-..++ +....|+.+.|.|+.+.. |+|.||. ..++.|.|.+-|+.||.|+..++.-
T Consensus 7 ae~ak~eLd----~~~~~~~~lr~rfa~~a~----------------l~V~nl~-~~~sndll~~~f~~fg~~e~av~~v 65 (275)
T KOG0115|consen 7 AEIAKRELD----GRFPKGRSLRVRFAMHAE----------------LYVVNLM-QGASNDLLEQAFRRFGPIERAVAKV 65 (275)
T ss_pred HHHHHHhcC----CCCCCCCceEEEeeccce----------------EEEEecc-hhhhhHHHHHhhhhcCccchheeee
Confidence 555556666 567889999999997732 5677995 8899999999999999998765543
Q ss_pred ---cCCCceEEEEeCCHHHHHHHHHHhCCCC
Q 013150 148 ---KTAGFQALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 148 ---~~~~~~afVeF~~~e~A~~A~~~l~g~~ 175 (448)
.+..+.++|+|...-.|.+|+..++..-
T Consensus 66 D~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 66 DDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred cccccccccchhhhhcchhHHHHHHHhccCc
Confidence 3344569999999999999999886443
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.79 E-value=0.0028 Score=63.65 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=67.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHh-hcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFS-AFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~-~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
..+++|+ |.||--..|.-.|+.+.. ..|.|++..|-+-+. .|||.|.+.++|.+.+.+|||...-..+...|.+.
T Consensus 442 ~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEe--eecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 4566777 889999999999999998 566777765533332 59999999999999999999987654445689999
Q ss_pred EeeCCcccccc
Q 013150 320 YSRHTDLSIKV 330 (448)
Q Consensus 320 ~ak~~~~~~~~ 330 (448)
|....++...+
T Consensus 518 f~~~deld~hr 528 (718)
T KOG2416|consen 518 FVRADELDKHR 528 (718)
T ss_pred ecchhHHHHHh
Confidence 99887765433
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.78 E-value=0.00092 Score=60.35 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=56.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec------------CCCcc----eEEEEecCHHHHHHHHHHhhcCC
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV------------GANRN----QAFIEFADLNQAIAMISYYASSS 79 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~------------~~~kg----~afVeF~~~e~A~~Al~~~~~~~ 79 (448)
..-+||+++||+.+.-.-|+++|+.||+|-.|.+-. +.+++ -|+|||.+...|++....+|
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln--- 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN--- 149 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC---
Confidence 346799999999999999999999999999988811 22222 28999999999999999998
Q ss_pred CCceeeCcE
Q 013150 80 EPAQVRGKT 88 (448)
Q Consensus 80 ~~~~~~g~~ 88 (448)
+..|+|+.
T Consensus 150 -n~~Iggkk 157 (278)
T KOG3152|consen 150 -NTPIGGKK 157 (278)
T ss_pred -CCccCCCC
Confidence 45677753
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.60 E-value=0.002 Score=58.30 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----------CCce------EEEEeCCHHHHHHHHHHhCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----------AGFQ------ALVQFSDTETASSAKNALDGR 174 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----------~~~~------afVeF~~~e~A~~A~~~l~g~ 174 (448)
++=.||+.||| ..++...|+++|+.||.|-+|.+-+.. .+.+ |+|||.+...|.+....||+.
T Consensus 73 k~GVvylS~IP-p~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIP-PYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCC-CccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 34457788998 899999999999999999999886511 1111 899999999999999999999
Q ss_pred CC
Q 013150 175 SI 176 (448)
Q Consensus 175 ~~ 176 (448)
.|
T Consensus 152 ~I 153 (278)
T KOG3152|consen 152 PI 153 (278)
T ss_pred cc
Confidence 83
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.54 E-value=0.0012 Score=59.89 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=45.7
Q ss_pred cccCceEEEEEecc---CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 135 SAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 135 ~~~G~v~~v~~~~~---~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.+||+|+++.+.++ .-.|-+||+|..+|+|++|++.||+.. +.+++|...++.-.
T Consensus 91 ~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw---------~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 91 DKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW---------YNGRPIHAELSPVT 148 (260)
T ss_pred HHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc---------ccCCcceeeecCcC
Confidence 38999999976652 223459999999999999999999998 78999999887643
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.0093 Score=47.02 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=51.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEE-------------eecCCCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTK-------------CNVGANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~-------------i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
.++-|.|=+.|.. ....|.+.|++||+|.+.. +.. ..+.-.|.|.+..+|.+||+.. +.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~N-----G~ 76 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQKN-----GT 76 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTTT-----TE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHhC-----Ce
Confidence 3456888888887 6678999999999998775 222 3678999999999999999974 56
Q ss_pred eeeCc-EEEEeecc
Q 013150 83 QVRGK-TVYLQYSN 95 (448)
Q Consensus 83 ~~~g~-~i~v~~s~ 95 (448)
.+.|. .+-|.+.+
T Consensus 77 i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 77 IFSGSLMVGVKPCD 90 (100)
T ss_dssp EETTCEEEEEEE-H
T ss_pred EEcCcEEEEEEEcH
Confidence 77775 45566663
No 183
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=96.40 E-value=0.23 Score=44.59 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=13.8
Q ss_pred EEEEcCCHHHHHHHH-HHhcCCccCCCceeEEEEEEe
Q 013150 286 ALIQYPDVQTAVVAK-EALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 286 afV~f~~~e~A~~Ai-~~lng~~l~g~~~~~i~v~~a 321 (448)
++-++.-+.+...+| .+++|+. .|.|+..
T Consensus 51 sihcmqvhketid~ip~av~gr~-------~i~veiy 80 (341)
T KOG2893|consen 51 SIHCMQVHKETIDKIPAAVHGRD-------NIHVEIY 80 (341)
T ss_pred eeehhhhhhhhhhcccccccCCc-------ceeEEEe
Confidence 555554444444443 3344432 5666653
No 184
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0083 Score=60.07 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=54.2
Q ss_pred ccEEEEcCCCCC--CCHH----HHHHhhcCCCceEEEEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 17 SKVLHLRNLPWE--CTEE----ELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 17 s~~l~V~nLp~~--~te~----~L~~~F~~fG~I~~v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
..+|+|-|+|.- ..-+ -|..+|+++|+|.++.+ ..|..+||.|+||.+..+|++|++.+++ ......+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G---~~ldknH 134 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNG---KRLDKNH 134 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccc---ceecccc
Confidence 567999999862 2222 23468999999988877 4566899999999999999999999995 3233344
Q ss_pred EEEEe
Q 013150 88 TVYLQ 92 (448)
Q Consensus 88 ~i~v~ 92 (448)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55553
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.23 E-value=0.017 Score=40.94 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC----CceEEEEeecCCCcceEEEEecCHHHHHHHHHHh
Q 013150 18 KVLHLRNLPWECTEEELIELGKPF----GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY 75 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~f----G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~ 75 (448)
..|+|+++ .+++.+||+.+|..| +. ..|..+.+.| |=|.|.+.+.|.+||..+
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 47999999 579999999999999 54 3466665543 889999999999999753
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.22 E-value=0.011 Score=52.11 Aligned_cols=64 Identities=17% Similarity=0.340 Sum_probs=49.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc--CCccCCCceeEEEEEEeeCCcc
Q 013150 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL 326 (448)
Q Consensus 258 t~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln--g~~l~g~~~~~i~v~~ak~~~~ 326 (448)
..+.|+++|..|+.+....++++=+ ...|.|.+.++|.+|+..|+ +..+.|. .|+|.|+.....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence 4689999999999999998888765 59999999999999999999 9999998 999999965543
No 187
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.17 E-value=0.023 Score=47.58 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=52.2
Q ss_pred CCCCccEEEEcCCC-----CCCCHH----HHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 13 TQPPSKVLHLRNLP-----WECTEE----ELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 13 ~~~~s~~l~V~nLp-----~~~te~----~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
-.+|.-||.|.=+. .....+ +|.+.|+.||++.-|++. .+.-+|+|.+-+.|-+|++.. +.+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv----~~~mwVTF~dg~sALaals~d-----g~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV----GDTMWVTFRDGQSALAALSLD-----GIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE----TTCEEEEESSCHHHHHHHHGC-----CSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe----CCeEEEEECccHHHHHHHccC-----CcE
Confidence 45677887777665 223333 566789999999888876 356899999999999999864 679
Q ss_pred eeCcEEEEeecccc
Q 013150 84 VRGKTVYLQYSNRQ 97 (448)
Q Consensus 84 ~~g~~i~v~~s~~~ 97 (448)
++|+.|.|+..++.
T Consensus 94 v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 94 VNGRTLKIRLKTPD 107 (146)
T ss_dssp ETTEEEEEEE----
T ss_pred ECCEEEEEEeCCcc
Confidence 99999999876554
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.85 E-value=0.022 Score=57.51 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=63.5
Q ss_pred CCCeEEEEEcCCCCCCCcHHHHHHHhcc-cCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 109 AGNVLLVTIEGTDARLVSIDVLHLVFSA-FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 109 ~~~~~~v~V~nlp~~~~~~e~l~~~f~~-~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
.+++|+ |.||- ...|.-.|++++.+ .|.|+.. .+. +-+..|||.|.+.++|...+.+|||..-. ..+.
T Consensus 443 ~Snvlh--I~nLv-RPFTlgQLkelL~rtgg~Vee~-WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP------~sNP 511 (718)
T KOG2416|consen 443 PSNVLH--IDNLV-RPFTLGQLKELLGRTGGNVEEF-WMD-KIKSHCYVSYSSVEEAAATREALHNVQWP------PSNP 511 (718)
T ss_pred ccceEe--eeccc-ccchHHHHHHHHhhccCchHHH-HHH-HhhcceeEecccHHHHHHHHHHHhccccC------CCCC
Confidence 355555 55994 88999999999984 5666555 433 22356999999999999999999998632 2678
Q ss_pred eEEEEEecCCCccccc
Q 013150 188 CTLRITYSAHTDLSVK 203 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~ 203 (448)
+.|.+.|....++.-.
T Consensus 512 K~L~adf~~~deld~h 527 (718)
T KOG2416|consen 512 KHLIADFVRADELDKH 527 (718)
T ss_pred ceeEeeecchhHHHHH
Confidence 8899999987766533
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.72 E-value=0.03 Score=41.98 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC
Q 013150 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305 (448)
Q Consensus 252 nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng 305 (448)
..|.+.-..+|.++|+.||.|. |.-+.+. .|||...+.+.|..|+..++-
T Consensus 15 tFPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 15 TFPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp E--TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eCchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 3788899999999999999984 3334333 499999999999999998863
No 190
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.69 E-value=0.0077 Score=63.03 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=61.5
Q ss_pred EeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC--CCceeEEEEEEeeCCc
Q 013150 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHISYSRHTD 325 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~--g~~~~~i~v~~ak~~~ 325 (448)
+.|.....+...|..+|+.||.|.+++.+++-+ .|.|+|.+.+.|..|+++|+|..+. |. +.+|.|||.-.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~---Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGA---PSRVSFAKTLP 375 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCC---ceeEEeccccc
Confidence 456666778889999999999999999988765 6999999999999999999999764 55 89999998764
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.68 E-value=0.046 Score=45.22 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=56.4
Q ss_pred CCCCCccEEEEcCCCCCCC-HHHHH---HhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECT-EEELI---ELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~t-e~~L~---~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
...+|=.||.|+=|..++. .+||+ ..++.||+|.+|.. -| +-.|.|.|.|..+|.+|+.+++. ..-|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cG--rqsavVvF~d~~SAC~Av~Af~s-----~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CG--RQSAVVVFKDITSACKAVSAFQS-----RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cC--CceEEEEehhhHHHHHHHHhhcC-----CCCCc
Confidence 4566778999988777554 34444 46788999999875 45 56799999999999999999874 45566
Q ss_pred EEEEeec
Q 013150 88 TVYLQYS 94 (448)
Q Consensus 88 ~i~v~~s 94 (448)
.+...|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 6666553
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.60 E-value=0.064 Score=44.40 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=54.3
Q ss_pred CCcEEEEEE--eCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 242 ESNVLLASI--ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 242 ~~~~l~v~v--~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
+-.++.|.- .|+...-+-..+..-.+.||.|.+|....+. .|.|.|.|..+|-+|+.+.+.. ..|. .++.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~-~pgt---m~qCs 157 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSR-APGT---MFQCS 157 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCC-CCCc---eEEee
Confidence 344555433 5664444445566778999999999987655 4999999999999999999874 4555 88888
Q ss_pred Ee
Q 013150 320 YS 321 (448)
Q Consensus 320 ~a 321 (448)
|.
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 84
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.47 E-value=0.08 Score=37.61 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=40.5
Q ss_pred EeCCCccCCHHHHHHHHhhc---CCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHh
Q 013150 250 IENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 303 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~f---G~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~l 303 (448)
|.++ .+.+.+++...|..| ....+|.-+.+. .+=|-|.|.+.|.+|+.+|
T Consensus 10 irGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 10 IRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred EEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 6777 578999999999999 124466667766 4889999999999999875
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.27 E-value=0.069 Score=40.88 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred EEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeeccccccccCC--ccccCCCCeEEEEEcCCCCCCCcHHHHHHHhc
Q 013150 58 AFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNK--TTADVAGNVLLVTIEGTDARLVSIDVLHLVFS 135 (448)
Q Consensus 58 afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~~~~~~~--~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~ 135 (448)
|.|+|.+++-|++-++.-. +.+.+++..+.|.-+........+ .......+++. |.||| ...++|.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~---~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVl--vsgip-~~l~ee~l~D~L- 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK---HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVL--VSGIP-DVLDEEELRDKL- 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE---EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEE--EeCCC-CCCChhhheeeE-
Confidence 7899999999999998765 577888887777644332211111 11122334444 55998 589999999654
Q ss_pred ccCceEEEEEeccCCC
Q 013150 136 AFGFVHKITTFEKTAG 151 (448)
Q Consensus 136 ~~G~v~~v~~~~~~~~ 151 (448)
.|.+-+.+++
T Consensus 74 ------eIhFqK~snG 83 (88)
T PF07292_consen 74 ------EIHFQKPSNG 83 (88)
T ss_pred ------EEEEecCCCC
Confidence 4555554433
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.92 E-value=0.018 Score=60.45 Aligned_cols=71 Identities=25% Similarity=0.346 Sum_probs=61.4
Q ss_pred EcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecC
Q 013150 117 IEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 117 V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
+.|.+ -..+.-.|..+|++||.|.+...+++- ..|.|+|.+.+.|..|+++|+|+++. .-|-+.+|.+++
T Consensus 303 ~~nn~-v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs-------~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 303 LENNA-VNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVS-------VTGAPSRVSFAK 372 (1007)
T ss_pred hhccc-ccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCccc-------ccCCceeEEecc
Confidence 44553 567788899999999999999888865 56999999999999999999999988 778889999987
Q ss_pred C
Q 013150 197 H 197 (448)
Q Consensus 197 ~ 197 (448)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.91 E-value=0.075 Score=49.44 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=50.4
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
..+|+|.+.+ .-+...|..+|++||+|++...- ++|.+-.|.|.+.-+|++||. -||..|.|.
T Consensus 197 D~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccC-ccchhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 4577788885 44567888999999999886654 334469999999999999998 788888774
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.76 E-value=0.051 Score=54.52 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=55.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcC--CCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKP--FGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~--fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.-++|.|+-||..+-+++++.||+. +=++.+|.+... .-.||+|++++||+.|.+++.. ....|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N---~nWyITfesd~DAQqAykylre--evk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN---DNWYITFESDTDAQQAYKYLRE--EVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec---CceEEEeecchhHHHHHHHHHH--HHHhhcCcchh
Confidence 3466999999999999999999985 567777776332 3489999999999999999885 34567787764
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.77 E-value=0.028 Score=53.19 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=59.7
Q ss_pred ccEEEEcCCCCCCCHHHHH---HhhcCCCceEEEEeecCCC-------cceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 17 SKVLHLRNLPWECTEEELI---ELGKPFGKVVNTKCNVGAN-------RNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~---~~F~~fG~I~~v~i~~~~~-------kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
.+.+||-+|+.++..+++. +.|.+||.|..|.+..+.+ ..-++|+|...|+|..||...+ ++.++|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~----g~~~dg 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD----GFVDDG 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh----hHHhhh
Confidence 4568999999877666665 4899999999988855442 2348999999999999999988 678888
Q ss_pred cEEEEeecccc
Q 013150 87 KTVYLQYSNRQ 97 (448)
Q Consensus 87 ~~i~v~~s~~~ 97 (448)
+.++..+...+
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 87666655443
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=0.28 Score=45.79 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=45.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCC
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~ 175 (448)
.+|.|-+++ .-.-..|..+|++||+|++.+.. +.+++-+|.|.+.-+|++|+. -||+-
T Consensus 198 ~WVTVfGFp--pg~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~i 255 (350)
T KOG4285|consen 198 TWVTVFGFP--PGQVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTI 255 (350)
T ss_pred ceEEEeccC--ccchhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCee
Confidence 344444986 34556677799999999998776 456789999999999999999 56664
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.47 E-value=0.14 Score=45.22 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=46.8
Q ss_pred CcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhC--CCCCCCcCCCCCCCCeEEEEEecCCCc
Q 013150 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSAHTD 199 (448)
Q Consensus 125 ~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~--g~~~~~~~~~~~~~~~~l~v~~s~~~~ 199 (448)
-..+.|+++|..|+.+.....+++- +...|.|.+.++|.+|...|+ +.. +.+..+++.|+....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~---------~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTS---------FNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSE---------ETTEE-EEE----SS
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccc---------cCCCceEEEEccccc
Confidence 4467899999999999999888865 459999999999999999999 666 778899999986443
No 201
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.41 E-value=0.078 Score=45.42 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=73.4
Q ss_pred CCCHHHHHHhhcC-CCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeeccccccccCCccc
Q 013150 28 ECTEEELIELGKP-FGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA 106 (448)
Q Consensus 28 ~~te~~L~~~F~~-fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~~~~~~~~~~ 106 (448)
+.+-..|.+.+.+ .+....+.+.. -..++..+.|.+++++.++++.- +..++|..+.++.-+...... ..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~-l~~~~fl~~F~~~~d~~~vl~~~-----p~~~~~~~~~l~~W~~~~~~~---~~ 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRD-LGDNLFLFQFESEEDRQRVLKGG-----PWNFNGHFLILQRWSPDFNPS---EV 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEE-eCCCeEEEEEEeccceeEEEecc-----cccccccchhhhhhccccccc---cc
Confidence 4556666655543 23222333321 12689999999999999998852 556777777765433221111 01
Q ss_pred cCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc
Q 013150 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK 148 (448)
Q Consensus 107 ~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~ 148 (448)
......++|.|.|||..-.+++.++.+-+.+|.+.++.....
T Consensus 99 ~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 99 KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 112345678888999878999999999999999999977653
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.30 E-value=0.25 Score=35.62 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 256 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 256 ~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
.++.++++..+..|+- .+|..++.| =||-|.|.++|+++....||..+++-
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRTG--FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCCE--EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 6789999999999964 345555555 48999999999999999999988775
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.10 E-value=0.035 Score=52.62 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=57.4
Q ss_pred EEEEeCCCccCCHH-HHH--HHHhhcCCeeEEEEEccC------C-CeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 247 LASIENMQYAVTLD-VLH--MVFSAFGPVQKIAMFDKN------G-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 247 ~v~v~nl~~~vt~~-~L~--~~F~~fG~I~~v~i~~~~------~-g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.|+|-.|+..+..+ .|. +.|.+||.|.+|.+.++. . ...++|.|...|+|..||...+|..+.|+ .|
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~l 155 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---AL 155 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hh
Confidence 35566776666444 443 579999999999886532 1 23489999999999999999999999998 78
Q ss_pred EEEEeeCC
Q 013150 317 HISYSRHT 324 (448)
Q Consensus 317 ~v~~ak~~ 324 (448)
+..|...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88877544
No 204
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=1.5 Score=43.57 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=5.9
Q ss_pred EEEcCCHHHH
Q 013150 287 LIQYPDVQTA 296 (448)
Q Consensus 287 fV~f~~~e~A 296 (448)
.++|.+-|.=
T Consensus 318 e~dfSDDEkE 327 (483)
T KOG2236|consen 318 EQDFSDDEKE 327 (483)
T ss_pred hhccchHHHH
Confidence 4677765433
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.40 E-value=1.5 Score=35.24 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=47.6
Q ss_pred EeCCCccCCHHHHHHHHhhcC-CeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 250 IENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG-~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
+...+...+.++|..+.+.+- .|..++|+++. +.+-++++|.+.++|.+-.+..||..+..
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 566667778888887777765 45667887755 34669999999999999999999997654
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.30 E-value=0.096 Score=53.85 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 6 SQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 6 ~~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.++++.+ .++..+|||+||-..+..+-++.+...+|.|.+.+... |+|.+|..++-+.+|+..+. ...++
T Consensus 30 ~qp~~~~-~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t----~~~~~ 99 (668)
T KOG2253|consen 30 IQPVFQP-LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLT----ELNID 99 (668)
T ss_pred CcccccC-CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhc----ccCCC
Confidence 3444444 56788999999999999999999999999998887653 99999999999999999887 66788
Q ss_pred CcEEEEee
Q 013150 86 GKTVYLQY 93 (448)
Q Consensus 86 g~~i~v~~ 93 (448)
|+.+.+..
T Consensus 100 ~~kl~~~~ 107 (668)
T KOG2253|consen 100 DQKLIENV 107 (668)
T ss_pred cchhhccc
Confidence 88776653
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.12 E-value=4.3 Score=41.35 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=45.5
Q ss_pred EEEeCCCccCCHHHHHHHHhh--cCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC
Q 013150 248 ASIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~--fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng 305 (448)
|.+.-++++.-+|+++.||+. +-.++++.+-.++ ..||.|++.++|+.|.+.|.-
T Consensus 178 vilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred EEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHH
Confidence 338899999999999999974 6788888875554 389999999999999877653
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.00 E-value=0.28 Score=36.38 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=40.0
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCee-----EEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQ-----KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~-----~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
.||+.++.- ..++..+|..+++.-+.|. +|+|.. . ++||+-.. +.|..+++.|++..+.|+ +|+|+
T Consensus 2 rl~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~---~-~S~vev~~-~~a~~v~~~l~~~~~~gk---~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFD---N-FSFVEVPE-EVAEKVLEALNGKKIKGK---KVRVE 72 (74)
T ss_dssp EEEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-S---S--EEEEE-T-T-HHHHHHHHTT--SSS-------EE
T ss_pred EEEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEee---e-EEEEEECH-HHHHHHHHHhcCCCCCCe---eEEEE
Confidence 356555554 5788999999888776554 445443 2 49999854 589999999999999999 99887
Q ss_pred Ee
Q 013150 320 YS 321 (448)
Q Consensus 320 ~a 321 (448)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 209
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.66 E-value=0.28 Score=43.23 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=41.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcC-CCce---EEEEeecCC------CcceEEEEecCHHHHHHHHHHhhc
Q 013150 17 SKVLHLRNLPWECTEEELIELGKP-FGKV---VNTKCNVGA------NRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~-fG~I---~~v~i~~~~------~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
...|.||+||+++||+++.+.++. ++.- ..+.-..+. .-.-|||.|.+.+++....+.+++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 457999999999999999998887 6665 333311110 123499999999999999988874
No 210
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.35 E-value=1.6 Score=35.04 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=47.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCC-CceEEEEeecCC--CcceEEEEecCHHHHHHHHHHhhc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPF-GKVVNTKCNVGA--NRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~f-G~I~~v~i~~~~--~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
.+..+.+...|.-++-++|..+.+.+ ..|..++|++.. ++-.+.++|++.++|++..+.+||
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCC
Confidence 45556666666677777787777777 567788885432 456799999999999999999996
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.27 E-value=0.61 Score=35.74 Aligned_cols=83 Identities=19% Similarity=0.250 Sum_probs=48.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcc-cccccccCCcCCCCCCCCCCCCccCccCCccc
Q 013150 154 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDL-SVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 232 (448)
Q Consensus 154 afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (448)
|+|+|.+.+-|++-++ +....+. ++++.++|.-+..... ..+.+-
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~-------l~~~~~~V~v~P~~~~~~~k~qv-------------------------- 46 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVP-------LEDCCVRVKVSPVTLGHLQKFQV-------------------------- 46 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEE-------ECCEEEEEEEEeEecCCceEEEE--------------------------
Confidence 6899999999998777 3333433 5566666654331110 000000
Q ss_pred cCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCe
Q 013150 233 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL 284 (448)
Q Consensus 233 ~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~ 284 (448)
......+++. +.|+|...++|+|++.. ++..-+.++|+
T Consensus 47 -----~~~vs~rtVl--vsgip~~l~ee~l~D~L-------eIhFqK~snGG 84 (88)
T PF07292_consen 47 -----FSGVSKRTVL--VSGIPDVLDEEELRDKL-------EIHFQKPSNGG 84 (88)
T ss_pred -----EEcccCCEEE--EeCCCCCCChhhheeeE-------EEEEecCCCCC
Confidence 0112345566 78999999999999853 45555555554
No 212
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.72 E-value=0.37 Score=42.40 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=50.2
Q ss_pred EEeCCCccCCHHHHHHHHhh-cCCeeEEEEEc---cC------CCeEEEEEcCCHHHHHHHHHHhcCCccCCC-c-eeEE
Q 013150 249 SIENMQYAVTLDVLHMVFSA-FGPVQKIAMFD---KN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKL 316 (448)
Q Consensus 249 ~v~nl~~~vt~~~L~~~F~~-fG~I~~v~i~~---~~------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~-~-~~~i 316 (448)
-|.+||.+.|++++++.++. ++.-.....+. .. .-..|+|.|.+.++...-++.++|..+.+. + ...-
T Consensus 11 VIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~ 90 (176)
T PF03467_consen 11 VIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPA 90 (176)
T ss_dssp EEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEE
T ss_pred EEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcce
Confidence 38999999999999998887 77663222222 11 112599999999999999999999766543 2 2467
Q ss_pred EEEEeeCCcc
Q 013150 317 HISYSRHTDL 326 (448)
Q Consensus 317 ~v~~ak~~~~ 326 (448)
.|+||-...+
T Consensus 91 ~VE~Apyqk~ 100 (176)
T PF03467_consen 91 VVEFAPYQKV 100 (176)
T ss_dssp EEEE-SS---
T ss_pred eEEEcchhcc
Confidence 8899877554
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.88 E-value=0.32 Score=48.14 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred CHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 258 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 258 t~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
|.++|...|.+||.|..|.+--... .|.|+|.+..+|-+|-. ..+..|.++ .|+|-|-+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCc---eeEEEEecCC
Confidence 6789999999999999998844332 59999999999977654 788889998 9999998774
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.72 E-value=1.9 Score=42.73 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=55.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcC-CeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG-~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
++.|+ |.-+|..+|..+|..++..|- .|..++++++. +.|.++|+|.+.++|..-.+.+||..+..
T Consensus 74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67788 889999999999999887664 67888998865 34679999999999999999999987643
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.60 E-value=12 Score=35.26 Aligned_cols=153 Identities=10% Similarity=0.112 Sum_probs=94.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC-----------CcceEEEEecCHHHHHHH----HHHhhcCCC
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA-----------NRNQAFIEFADLNQAIAM----ISYYASSSE 80 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~-----------~kg~afVeF~~~e~A~~A----l~~~~~~~~ 80 (448)
.+|.|...|+..+++-..+...|-+||.|++|.++... ......+.|-+.+.+-.. ++.+.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE--f 91 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE--F 91 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH--H
Confidence 36789999999999999999999999999999996543 236789999998875433 222221 1
Q ss_pred CceeeCcEEEEeeccccccc----cC----C-----------ccccCCCCeEEEEEcCCCCCCCcHHHHHHHh---cccC
Q 013150 81 PAQVRGKTVYLQYSNRQEIV----NN----K-----------TTADVAGNVLLVTIEGTDARLVSIDVLHLVF---SAFG 138 (448)
Q Consensus 81 ~~~~~g~~i~v~~s~~~~~~----~~----~-----------~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f---~~~G 138 (448)
+..+....|.+.|-.-+... .+ . .......|.+.|-.. ....+++.+++-+ ..-+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~---~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK---DPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec---CccchhHHHHHhhhhhccCC
Confidence 33566666666553321110 00 0 001122344444332 2333555555443 2233
Q ss_pred c----eEEEEEec------cCCCceEEEEeCCHHHHHHHHHHhCC
Q 013150 139 F----VHKITTFE------KTAGFQALVQFSDTETASSAKNALDG 173 (448)
Q Consensus 139 ~----v~~v~~~~------~~~~~~afVeF~~~e~A~~A~~~l~g 173 (448)
. +++|.++. .-...||.+.|-+..-|...++.|..
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2 46666654 22457899999999999999998873
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.83 E-value=0.46 Score=47.10 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=56.3
Q ss_pred ccEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 17 SKVLHLRNLPWE-CTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 17 s~~l~V~nLp~~-~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.+.|-+.-.|.. -|-++|...|.+||+|.+|.+.-. ---|.|+|.+..+|-+|... ....|++|.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s-----~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYAS-----HGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhcc-----ccceecCceeEEEEec
Confidence 344555555553 356889999999999999887322 34599999999999766553 4779999999999877
Q ss_pred ccc
Q 013150 96 RQE 98 (448)
Q Consensus 96 ~~~ 98 (448)
...
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.59 E-value=0.71 Score=42.51 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=45.3
Q ss_pred CcHHHHHHHhcccCceEEEEEec---------cCC-C----ce---------EEEEeCCHHHHHHHHHHhCCCCCCCcCC
Q 013150 125 VSIDVLHLVFSAFGFVHKITTFE---------KTA-G----FQ---------ALVQFSDTETASSAKNALDGRSIPRYLL 181 (448)
Q Consensus 125 ~~~e~l~~~f~~~G~v~~v~~~~---------~~~-~----~~---------afVeF~~~e~A~~A~~~l~g~~~~~~~~ 181 (448)
-+++.|...|+.||.|..|.|.- .+. + ++ |||+|..-..-..|+..|.|.++..+ .
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk-~ 251 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKK-G 251 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhh-c
Confidence 46788999999999999887642 111 1 11 67777777777778888887764311 1
Q ss_pred CCCCCCeEEEEEecCCCc
Q 013150 182 PENMGPCTLRITYSAHTD 199 (448)
Q Consensus 182 ~~~~~~~~l~v~~s~~~~ 199 (448)
...+....++|+|.....
T Consensus 252 d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 252 DDGFFQANVKVDFDRSRH 269 (445)
T ss_pred CCcccccccccccchhhh
Confidence 111223345666655433
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.48 E-value=4.6 Score=41.38 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=59.7
Q ss_pred CCcEEEEEEeCCC-ccCCHHHHHHHHhhc----CCeeEEEEEcc--------------C---------------------
Q 013150 242 ESNVLLASIENMQ-YAVTLDVLHMVFSAF----GPVQKIAMFDK--------------N--------------------- 281 (448)
Q Consensus 242 ~~~~l~v~v~nl~-~~vt~~~L~~~F~~f----G~I~~v~i~~~--------------~--------------------- 281 (448)
.++.|= |.|++ ..|..++|+.+|+.| |.|++|.|... .
T Consensus 173 ~T~RLA--VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 173 ETKRLA--VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccceee--EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455555 77886 347889999998876 59999998421 0
Q ss_pred ----------------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 282 ----------------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 282 ----------------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+-|+|.|+|++.+.|.+.-+.++|..+... +..|.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeec
Confidence 125799999999999999999999998776 567777774
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.10 E-value=4.1 Score=30.07 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccC-----ceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFG-----FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G-----~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
++|.++.- ..++...|-.++..-+ .|-+|.+.. .++||+-.. +.|..+++.|++.. +.+
T Consensus 3 l~in~Gr~--dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~-~~a~~v~~~l~~~~---------~~g 66 (74)
T PF03880_consen 3 LFINVGRK--DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPE-EVAEKVLEALNGKK---------IKG 66 (74)
T ss_dssp EEES-SGG--GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-T-T-HHHHHHHHTT-----------SSS
T ss_pred EEEEcccc--cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECH-HHHHHHHHHhcCCC---------CCC
Confidence 44555554 3466555555555443 456777766 369999755 48889999999988 779
Q ss_pred eEEEEEec
Q 013150 188 CTLRITYS 195 (448)
Q Consensus 188 ~~l~v~~s 195 (448)
++++|+.|
T Consensus 67 k~v~ve~A 74 (74)
T PF03880_consen 67 KKVRVERA 74 (74)
T ss_dssp ----EEE-
T ss_pred eeEEEEEC
Confidence 99988753
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.73 E-value=11 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhc
Q 013150 28 ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 28 ~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
.++-+||+..++.|+-.. |+ .+ +--=||.|.+.++|+++....++
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~--~d--~tGfYIvF~~~~Ea~rC~~~~~~ 55 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IR--DD--RTGFYIVFNDSKEAERCFRAEDG 55 (66)
T ss_pred CccHHHHHHHHhcCCcce-EE--ec--CCEEEEEECChHHHHHHHHhcCC
Confidence 678899999999998743 33 33 23369999999999999998873
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.35 E-value=7.9 Score=39.73 Aligned_cols=68 Identities=21% Similarity=0.337 Sum_probs=56.1
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHhhcCC----CceEEEEe--------------ecCC-------------C-------
Q 013150 14 QPPSKVLHLRNLPW-ECTEEELIELGKPF----GKVVNTKC--------------NVGA-------------N------- 54 (448)
Q Consensus 14 ~~~s~~l~V~nLp~-~~te~~L~~~F~~f----G~I~~v~i--------------~~~~-------------~------- 54 (448)
...++.|=|-||.| .+.-+||.-+|+.| |.|.+|.| +.|. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 56789999999999 89999999999988 79999999 2233 0
Q ss_pred ----------------c-ceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 55 ----------------R-NQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 55 ----------------k-g~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
+ -||.|+|.+.+.|....+.|+ ++.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD----G~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD----GIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC----cceec
Confidence 1 269999999999999999998 45554
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.16 E-value=5 Score=39.88 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=54.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCC-CceEEEEeecCC--CcceEEEEecCHHHHHHHHHHhhcC
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPF-GKVVNTKCNVGA--NRNQAFIEFADLNQAIAMISYYASS 78 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~f-G~I~~v~i~~~~--~kg~afVeF~~~e~A~~Al~~~~~~ 78 (448)
++..|.|=.+|..+|-.||..+...| -.|.+++|++.. ++=.+.|+|++.++|....+.+|++
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCC
Confidence 38889999999999999999999877 678888886543 3556999999999999999999963
No 223
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.72 E-value=4.4 Score=42.19 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
+..++| |+|+...+..+-+..+...+|.|.+++... | ||.+|..+..+..|+..|+-..+.|.
T Consensus 39 ~~~~vf--v~~~~~~~s~~~~~~il~~~g~v~s~kr~~----f-gf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 39 PRDTVF--VGNISYLVSQEFWKSILAKSGFVPSWKRDK----F-GFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCceeE--ecchhhhhhHHHHHHHHhhCCcchhhhhhh----h-cccchhhHHHHHHHHHHhcccCCCcc
Confidence 344555 889999999999999999999998877654 4 99999999999999999999888887
No 224
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=71.52 E-value=20 Score=36.43 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=6.1
Q ss_pred EEEEEcCCH
Q 013150 285 QALIQYPDV 293 (448)
Q Consensus 285 ~afV~f~~~ 293 (448)
.|.+.+++.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 477777765
No 225
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.51 E-value=10 Score=33.01 Aligned_cols=60 Identities=10% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 262 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 262 L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
...+|..|-+..-..+++..+ ..-|.|++.+.|..|...+++..|.|+ ..++..|+....
T Consensus 32 ~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGK--NELKLYFAQPGH 91 (193)
T ss_pred HHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCC--ceEEEEEccCCC
Confidence 445676666555445555543 377899999999999999999999987 377777775543
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.50 E-value=9.4 Score=37.34 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCce-EEEEEeccCCCceEEEEeCCHHHHHHHHHH
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFV-HKITTFEKTAGFQALVQFSDTETASSAKNA 170 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v-~~v~~~~~~~~~~afVeF~~~e~A~~A~~~ 170 (448)
..++.|| ++|.+..++|+|. +|+.|+.- -+|..+.+. .||-.|.+...|..|+-.
T Consensus 391 pHVlEIy--dfp~efkteDll~-~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIY--DFPDEFKTEDLLK-AFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEec--cCchhhccHHHHH-HHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 3566677 9997778888887 88888754 566666653 699999999999998873
No 227
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=67.03 E-value=26 Score=34.54 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=9.4
Q ss_pred EeCCCccCCHHHHHHHHhhcC
Q 013150 250 IENMQYAVTLDVLHMVFSAFG 270 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG 270 (448)
+.+|...-..+.+-.-|+.=|
T Consensus 221 ~p~l~~~g~~d~~ss~~ed~g 241 (487)
T KOG4672|consen 221 VPGLKPPGPPDGLSSNFEDSG 241 (487)
T ss_pred ccCCCCCCCCccccCCCCCCC
Confidence 445544444444444444433
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.90 E-value=9 Score=35.70 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=37.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCce-EEEEeecCCCcceEEEEecCHHH
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKV-VNTKCNVGANRNQAFIEFADLNQ 67 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I-~~v~i~~~~~kg~afVeF~~~e~ 67 (448)
..-|+|+||+.++--.||+..+.+-|-+ .++.+ + ...|-||++|-+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-k-g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-K-GHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-e-cCCcceeEecCCccC
Confidence 3459999999999999999999988765 33333 2 346789999987543
No 229
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=64.55 E-value=1.3e+02 Score=29.06 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHH---HHhcCC-ccCCCceeEEEEEEeeCCcccc
Q 013150 257 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK---EALEGH-CIYDGGFCKLHISYSRHTDLSI 328 (448)
Q Consensus 257 vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai---~~lng~-~l~g~~~~~i~v~~ak~~~~~~ 328 (448)
.+|..|...|-.-+.|+-|.-+...+-|++|.++.+.---..-- ..=.|. .-.|+ ..+|+|-+..+|..
T Consensus 99 sNE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q~~W~~~~G~~a~~G~---~FkVkWiRl~eLpF 171 (441)
T KOG1902|consen 99 SNEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQIHWVLPAGMSAMLGG---VFKVKWIRLRELPF 171 (441)
T ss_pred ccHHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCCccccccCCcccccCc---eeeEeEEeeccccc
Confidence 35788999999988887666566665577887776653222211 001233 34566 89999988876554
No 230
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=58.84 E-value=47 Score=35.63 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=3.8
Q ss_pred eeeCcEEE
Q 013150 83 QVRGKTVY 90 (448)
Q Consensus 83 ~~~g~~i~ 90 (448)
.++|..+.
T Consensus 49 v~gg~E~~ 56 (830)
T KOG1923|consen 49 VIGGSEQS 56 (830)
T ss_pred HhcCceee
Confidence 45555443
No 231
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=58.70 E-value=45 Score=35.94 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=4.4
Q ss_pred EEEeCCHHHH
Q 013150 155 LVQFSDTETA 164 (448)
Q Consensus 155 fVeF~~~e~A 164 (448)
.++|.+....
T Consensus 296 ~~r~~~~~~~ 305 (756)
T KOG2375|consen 296 GVRFENEDFN 305 (756)
T ss_pred chhhhhhhhh
Confidence 3444444444
No 232
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=54.09 E-value=53 Score=24.30 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc
Q 013150 259 LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 259 ~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln 304 (448)
.+++.+....+| +.-.++.....|.+.|+-+++.+.|.++.+.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356778888999 666676655445579999999999999988874
No 233
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=53.47 E-value=18 Score=30.58 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=30.0
Q ss_pred cEEEEEEeCCCcc-CCHHHHHHHHhhcCCeeEEEEEcc
Q 013150 244 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDK 280 (448)
Q Consensus 244 ~~l~v~v~nl~~~-vt~~~L~~~F~~fG~I~~v~i~~~ 280 (448)
..+.|.+.|||.. .+++.|+.+-+.+|.++++.....
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3456778999977 588999999999999999877443
No 234
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=53.24 E-value=1.2e+02 Score=30.93 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.1
Q ss_pred eEEEEeCCHHHHHHHHHHhCC
Q 013150 153 QALVQFSDTETASSAKNALDG 173 (448)
Q Consensus 153 ~afVeF~~~e~A~~A~~~l~g 173 (448)
+|+|+=+|.|.-++|++.+..
T Consensus 206 H~~Isadt~eki~~Ai~vien 226 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVIEN 226 (554)
T ss_pred eEEEecchHHHHHHHHHHHHH
Confidence 499999999988888886654
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=53.04 E-value=16 Score=34.39 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=55.6
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----------CCeEEEEEcCCHHHHHHH----HHHhcC--
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----------GGLQALIQYPDVQTAVVA----KEALEG-- 305 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----------~g~~afV~f~~~e~A~~A----i~~lng-- 305 (448)
++.|. +.|+..+++-..+...|-+||.|++|.++.+. ...+..+.|-+.+.+..- ++.|+-
T Consensus 15 TRSLL--feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLL--FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHH--HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 34455 68998999999999999999999999997654 113578999998876543 333332
Q ss_pred CccCCCceeEEEEEEeeCC
Q 013150 306 HCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 306 ~~l~g~~~~~i~v~~ak~~ 324 (448)
..+... .|+|+|...+
T Consensus 93 ~~L~S~---~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVSLN 108 (309)
T ss_pred HhcCCc---ceeEEEEEEe
Confidence 245555 8888887643
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.60 E-value=10 Score=30.89 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=25.5
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhcCCCceEEEEe-ecCCCcceEEEEecCHHH
Q 013150 19 VLHLRNLPWE---------CTEEELIELGKPFGKVVNTKC-NVGANRNQAFIEFADLNQ 67 (448)
Q Consensus 19 ~l~V~nLp~~---------~te~~L~~~F~~fG~I~~v~i-~~~~~kg~afVeF~~~e~ 67 (448)
++.|-|++.. ++.++|++.|+.|..++-..+ -...+.|++.|+|.+.-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChH
Confidence 4566777542 466899999999987753322 222357999999988543
No 237
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=48.43 E-value=4.8 Score=39.37 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=47.5
Q ss_pred CCccEEEEcCCCCCCCHH--------HHHHhhcC--CCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 15 PPSKVLHLRNLPWECTEE--------ELIELGKP--FGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~--------~L~~~F~~--fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
..-|.+|+.+....-+.+ ++...|.. .+.+..+... ...++|..|++|...+.|++++....
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~~ 247 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGFY 247 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcccc
Confidence 345778998888866666 99999999 5777666652 23457889999999999999986443
No 238
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=47.90 E-value=2.6e+02 Score=28.68 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCC-CCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCC
Q 013150 110 GNVLLVTIEGTDA-RLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 174 (448)
Q Consensus 110 ~~~~~v~V~nlp~-~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~ 174 (448)
.+.+++.+-.|-. ..+-+.+|+.-|+-+-.-...+.+... .+++=+.|.+++||++-.+.+..+
T Consensus 74 ~rsyFlrl~di~~~rliWdqELY~nf~y~q~r~ffhtFegd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 74 QRSYFLRLVDIVNNRLIWDQELYQNFEYRQPRTFFHTFEGD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred cceeeeEEeeecCceeeehHHhhhhceeccCccceeeeccc-cceeeecccCHHHHHHHHHHHHHH
Confidence 3445544445532 245566677777544433333444432 245667899999999988877654
No 239
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=46.13 E-value=58 Score=25.10 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHhhcCC-CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 32 EELIELGKPF-GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 32 ~~L~~~F~~f-G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
+.++++++.+ |+++++.+..|+.--...+|+.|.+.|.++.-...
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 4566777777 78999998888888889999999999888876655
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.64 E-value=38 Score=24.03 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCceEEEEe
Q 013150 32 EELIELGKPFGKVVNTKC 49 (448)
Q Consensus 32 ~~L~~~F~~fG~I~~v~i 49 (448)
.+||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999976555
No 241
>PF14893 PNMA: PNMA
Probab=44.26 E-value=20 Score=34.93 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=31.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhc----CCCceEEEEee-----cCCCcceEEEEecC
Q 013150 16 PSKVLHLRNLPWECTEEELIELGK----PFGKVVNTKCN-----VGANRNQAFIEFAD 64 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~----~fG~I~~v~i~-----~~~~kg~afVeF~~ 64 (448)
+-|.|.|.+||.+|+++||.+.++ ..|. .+++ +..+..-|+|||..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~---yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGR---YRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhccccc---ceehhhHhhhhcccceeeeeccc
Confidence 457799999999999999998665 4454 3331 11224457777743
No 242
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.78 E-value=1e+02 Score=23.41 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=36.3
Q ss_pred CCCccCCHHHHHHHHhh-cC-CeeEEEEEccCCC-eEEEEEcCCHHHHHHHHHHh
Q 013150 252 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEAL 303 (448)
Q Consensus 252 nl~~~vt~~~L~~~F~~-fG-~I~~v~i~~~~~g-~~afV~f~~~e~A~~Ai~~l 303 (448)
..+...+..++++.++. || .|.+|..+....+ --|||.+..-+.|...-..|
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 44558899999988876 55 5677766443333 14999999988888765443
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.24 E-value=47 Score=32.14 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCCC
Q 013150 154 ALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 154 afVeF~~~e~A~~A~~~l~g~~ 175 (448)
|||+|++.++|..|.+.+...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999776543
No 244
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=40.88 E-value=31 Score=30.05 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=37.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC-----CCcceEEEEecCHHHHHHHHHHhh
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG-----ANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~-----~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
.+++|.+ +.+..-++|.++-+ |++.+|..... ..+|-.||.|.+.+.|...++.-.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4567776 33333344444444 78888877321 346889999999999999887643
No 245
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=40.05 E-value=1.6e+02 Score=30.10 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=12.9
Q ss_pred CHHHHHHHHhhcCCeeEEEE
Q 013150 258 TLDVLHMVFSAFGPVQKIAM 277 (448)
Q Consensus 258 t~~~L~~~F~~fG~I~~v~i 277 (448)
.++.|.++|+..| |.++.+
T Consensus 265 ~dp~~nn~~s~ag-ise~~l 283 (569)
T KOG3671|consen 265 NDPPLNNLFSSAG-ISEAQL 283 (569)
T ss_pred CChhhhcccccCC-CCcccc
Confidence 4577888898885 444544
No 246
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=39.31 E-value=1.6e+02 Score=22.67 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcC-CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC
Q 013150 259 LDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 305 (448)
Q Consensus 259 ~~~L~~~F~~fG-~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng 305 (448)
.+.+++++++.| ++++.......-.+...+++.|.+.|.++...+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 355777888776 67777776655556789999999999998877754
No 247
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=38.90 E-value=33 Score=31.88 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=30.1
Q ss_pred CCCCccEEEEcCCCCC------------CCHHHHHHhhcCCCceEEEEe
Q 013150 13 TQPPSKVLHLRNLPWE------------CTEEELIELGKPFGKVVNTKC 49 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~------------~te~~L~~~F~~fG~I~~v~i 49 (448)
+.+.-.|||+.+||-. -+|+-|+..|+.||.|..|.|
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 4555678999998852 367789999999999999888
No 248
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=38.33 E-value=2.3e+02 Score=28.73 Aligned_cols=13 Identities=46% Similarity=0.938 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCC
Q 013150 407 HPYMPPGSMPMGP 419 (448)
Q Consensus 407 ~~~~pp~~~~~~~ 419 (448)
+|..|++.|+..|
T Consensus 583 ~~~vP~~~M~~~P 595 (654)
T COG5180 583 SPHVPAGFMAAGP 595 (654)
T ss_pred CCCCCccccccCC
Confidence 4556776666443
No 249
>PHA03378 EBNA-3B; Provisional
Probab=37.93 E-value=5.4e+02 Score=27.66 Aligned_cols=7 Identities=57% Similarity=1.042 Sum_probs=4.5
Q ss_pred ceEEEEe
Q 013150 56 NQAFIEF 62 (448)
Q Consensus 56 g~afVeF 62 (448)
.++||+|
T Consensus 278 RVaFveF 284 (991)
T PHA03378 278 RVAFVEF 284 (991)
T ss_pred hhHHHHH
Confidence 5666666
No 250
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.17 E-value=1.6e+02 Score=21.98 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=35.4
Q ss_pred eCCCccCCHHHHHHHHhh-cC-CeeEEEEEccCCC-eEEEEEcCCHHHHHHHHHH
Q 013150 251 ENMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEA 302 (448)
Q Consensus 251 ~nl~~~vt~~~L~~~F~~-fG-~I~~v~i~~~~~g-~~afV~f~~~e~A~~Ai~~ 302 (448)
+..+...+..+|++.++. || .|.+|..+....+ --|||.+..-+.|...-..
T Consensus 19 F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 19 FIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 355568899999988876 45 5667765433322 1499999888888765443
No 251
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.16 E-value=1.9e+02 Score=28.71 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEEEEeCCC-ccCCHHHHHHHHhhc----CCeeEEEEEccC-----------CC-----------------
Q 013150 237 KKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAF----GPVQKIAMFDKN-----------GG----------------- 283 (448)
Q Consensus 237 ~~~~~~~~~l~v~v~nl~-~~vt~~~L~~~F~~f----G~I~~v~i~~~~-----------~g----------------- 283 (448)
.....+++.|- |-|++ ..|...+|+.+|+.| |.|.+|.|.... .|
T Consensus 140 pe~G~~tkrLA--vVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk 217 (622)
T COG5638 140 PEEGNPTKRLA--VVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQK 217 (622)
T ss_pred cCCCCccccee--EeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhc
Q ss_pred -----------------------------------------eEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 284 -----------------------------------------LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 284 -----------------------------------------~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
|+|.|+|++.+.+.....+.+|..+... ...+.+.|
T Consensus 218 ~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRf 294 (622)
T COG5638 218 FGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRF 294 (622)
T ss_pred cCCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc-cceeeeee
No 252
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.56 E-value=29 Score=31.65 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTK 48 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~ 48 (448)
+....+++||+-|+|..+|++.|..+.+..|.+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4566789999999999999999999999999765444
No 253
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.73 E-value=2.4e+02 Score=30.25 Aligned_cols=7 Identities=29% Similarity=0.254 Sum_probs=2.7
Q ss_pred eEEEEEc
Q 013150 112 VLLVTIE 118 (448)
Q Consensus 112 ~~~v~V~ 118 (448)
+++|++.
T Consensus 150 ~ifILaT 156 (624)
T PRK14959 150 VTFVLAT 156 (624)
T ss_pred EEEEEec
Confidence 3344433
No 254
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=32.43 E-value=4.7e+02 Score=26.91 Aligned_cols=8 Identities=13% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHhhcCCe
Q 013150 265 VFSAFGPV 272 (448)
Q Consensus 265 ~F~~fG~I 272 (448)
+|-.+|+|
T Consensus 290 ~cg~~gH~ 297 (554)
T KOG0119|consen 290 ICGPLGHI 297 (554)
T ss_pred ccCCcccc
Confidence 44444444
No 255
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.27 E-value=88 Score=30.91 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=40.8
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCe-eEEEEEccCCCeEEEEEcCCHHHHHHHHHH
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDKNGGLQALIQYPDVQTAVVAKEA 302 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I-~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ 302 (448)
+|- |.+.+...-.++|..+|+.|++- -+|+.+.+. +||--|.+...|..|+..
T Consensus 393 VlE--Iydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 393 VLE--IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred eeE--eccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 444 77888888889999999999752 234445444 599999999999999874
No 256
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.38 E-value=1.5e+02 Score=26.27 Aligned_cols=12 Identities=67% Similarity=1.339 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q 013150 407 HPYMPPGSMPMG 418 (448)
Q Consensus 407 ~~~~pp~~~~~~ 418 (448)
+|.||++..|..
T Consensus 91 HP~mp~~s~p~~ 102 (189)
T PF07777_consen 91 HPSMPPGSHPFS 102 (189)
T ss_pred CCCCCcccccCC
Confidence 444554444433
No 257
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.75 E-value=1.6e+02 Score=21.55 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHhhcCCCceEEEEeecCC-CcceEEEEecCHHHHHHHHHHhh
Q 013150 32 EELIELGKPFGKVVNTKCNVGA-NRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 32 ~~L~~~F~~fG~I~~v~i~~~~-~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
.+|++.++++| +.-.++ +|. ..++.|+-+.+.++++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-SGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-ETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-CCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667778889 443444 332 26778888889999888888765
No 258
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=29.46 E-value=1.3e+02 Score=25.66 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=38.5
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcc-cCce-EEEEEeccCCCceEEEEeCCHHHHHHHHHHhCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSA-FGFV-HKITTFEKTAGFQALVQFSDTETASSAKNALDG 173 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~-~G~v-~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g 173 (448)
+++..+|.++|.....+-|.|+..... |+.. .++..-+...-+.+.|+|....+|..-+..|-.
T Consensus 2 snifla~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 2 SNIFLAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred ceEEEEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 466778889985333333333333222 3333 233333322334699999999999999888864
No 259
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.22 E-value=50 Score=28.91 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe-EEEEEecCCC
Q 013150 129 VLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TLRITYSAHT 198 (448)
Q Consensus 129 ~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~-~l~v~~s~~~ 198 (448)
...++|.+|-+..-..+++.. +..-|-|.+.+.|..|...+++.. +.++ .++.-|+...
T Consensus 31 ~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~---------f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTS---------FNGKNELKLYFAQPG 90 (193)
T ss_pred HHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcc---------cCCCceEEEEEccCC
Confidence 455567666665555555533 447889999999999999999988 4455 6777777644
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.11 E-value=57 Score=31.55 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=25.8
Q ss_pred EEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 286 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 286 afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
|||.|++.++|..|.+.+....- + .++++.|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~---~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--N---SWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--C---CceEeeCCCc
Confidence 79999999999999997766542 3 5577766544
No 261
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.46 E-value=23 Score=25.63 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc
Q 013150 260 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 260 ~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln 304 (448)
++|.+.|..+....++. ...+|..|.|.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh------hhhhccCCCCHHHHHHHHHHhh
Confidence 67888776654443322 1139999999999999887764
No 262
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.60 E-value=9.4e+02 Score=25.86 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=53.0
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeE-----EEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQK-----IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~-----v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
..+|+.|+.- ..++..+|-...+.-+.|.. |+|+. . +.||+-. .+.|...++.|++..+.|+ .|.|
T Consensus 487 ~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~---~-~s~v~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRD-DGVEVRHIVGAIANEGDISSRYIGNIKLFA---S-HSTIELP-KGMPGEVLQHFTRTRILNK---PMNM 557 (629)
T ss_pred EEEEEecccc-cCCCHHHHHHHHHhhcCCChhhCCcEEEeC---C-ceEEEcC-hhhHHHHHHHhccccccCC---ceEE
Confidence 4588877766 57888888877777666654 33443 3 4999985 4568899999999999999 9999
Q ss_pred EEee
Q 013150 319 SYSR 322 (448)
Q Consensus 319 ~~ak 322 (448)
+.++
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 263
>PHA03247 large tegument protein UL36; Provisional
Probab=22.75 E-value=5.2e+02 Score=32.72 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=8.4
Q ss_pred CCCHHHHHHhhcCCC
Q 013150 28 ECTEEELIELGKPFG 42 (448)
Q Consensus 28 ~~te~~L~~~F~~fG 42 (448)
.||-=||.-.---||
T Consensus 2296 ~VtAmDia~~A~L~G 2310 (3151)
T PHA03247 2296 RVTVMDLVLAATLLG 2310 (3151)
T ss_pred cchHHHHHHHHHHhC
Confidence 566667765444444
No 264
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=22.65 E-value=1.1e+02 Score=26.27 Aligned_cols=43 Identities=23% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCC--CCCHHHHHHhhcCCCceE------------EEEeecCCCcceEEEEecCHHH
Q 013150 25 LPW--ECTEEELIELGKPFGKVV------------NTKCNVGANRNQAFIEFADLNQ 67 (448)
Q Consensus 25 Lp~--~~te~~L~~~F~~fG~I~------------~v~i~~~~~kg~afVeF~~~e~ 67 (448)
+|. ..|.+.|+.++.+||.|- .++|++|-.+.-.-|+|-|++.
T Consensus 90 ~P~~~~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~ 146 (166)
T PF12385_consen 90 EPANASYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQ 146 (166)
T ss_pred CCcccccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCccc
Confidence 444 789999999999999983 3444555444445666666554
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.54 E-value=63 Score=20.21 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=10.1
Q ss_pred ccCCHHHHHHHHhhcC
Q 013150 255 YAVTLDVLHMVFSAFG 270 (448)
Q Consensus 255 ~~vt~~~L~~~F~~fG 270 (448)
.++++++|+++|.+-+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678999999998654
No 266
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.62 E-value=2e+02 Score=20.28 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=29.6
Q ss_pred EEEEeCCCccCCHHHHHHHHhhcCCeeE-EEEEccCCCeEEEE-EcCCHHHHHHHHHHhc
Q 013150 247 LASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDKNGGLQALI-QYPDVQTAVVAKEALE 304 (448)
Q Consensus 247 ~v~v~nl~~~vt~~~L~~~F~~fG~I~~-v~i~~~~~g~~afV-~f~~~e~A~~Ai~~ln 304 (448)
+|.|......-+-+.+.+-+..-|.-.. +.+.....-+..+| .|.|.++|.+++..|.
T Consensus 6 ~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 6 YVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 3445544322222333344444454333 33333333344555 6899999999999987
No 267
>PRK11901 hypothetical protein; Reviewed
Probab=21.28 E-value=2.3e+02 Score=27.40 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEccC-CCeEEEE----EcCCHHHHHHHHHHhcC
Q 013150 257 VTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALI----QYPDVQTAVVAKEALEG 305 (448)
Q Consensus 257 vt~~~L~~~F~~fG~I~~v~i~~~~-~g~~afV----~f~~~e~A~~Ai~~lng 305 (448)
-+++.|.++-.+++ +..++++... +|--.|| .|.+.++|..|++.|--
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 46788888877775 3445554322 2312343 59999999999998754
No 268
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.98 E-value=3.2e+02 Score=22.05 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.3
Q ss_pred HHHHHHhcccCceEEEEEec
Q 013150 128 DVLHLVFSAFGFVHKITTFE 147 (448)
Q Consensus 128 e~l~~~f~~~G~v~~v~~~~ 147 (448)
+.|.+.|+.=|+|.+|....
T Consensus 16 nKLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVT 35 (145)
T ss_pred chhhHHhcCCCceEEEEEEe
Confidence 45777999999999987665
No 269
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.66 E-value=2.6e+02 Score=21.22 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHhhcC-CC-ceEEEEeecCC-CcceEEEEecCHHHHHHHHHHh
Q 013150 25 LPWECTEEELIELGKP-FG-KVVNTKCNVGA-NRNQAFIEFADLNQAIAMISYY 75 (448)
Q Consensus 25 Lp~~~te~~L~~~F~~-fG-~I~~v~i~~~~-~kg~afVeF~~~e~A~~Al~~~ 75 (448)
...+++..+|++.++. || +|.+|..+.-. ...-|||.+...++|.+....+
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4578999999999887 45 46666664322 3356999999999998876654
No 270
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=20.50 E-value=5.3e+02 Score=27.17 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=4.6
Q ss_pred HHHHHHhcccC
Q 013150 128 DVLHLVFSAFG 138 (448)
Q Consensus 128 e~l~~~f~~~G 138 (448)
|.++.|-++-|
T Consensus 159 ETikqlqe~sg 169 (600)
T KOG1676|consen 159 ETIKQLQEQSG 169 (600)
T ss_pred cHHHHHHhhcC
Confidence 33444444444
No 271
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=20.30 E-value=4.5e+02 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=21.1
Q ss_pred CCcHHHHHHHhccc------CceEEEEEeccCCCceEEEEeCC
Q 013150 124 LVSIDVLHLVFSAF------GFVHKITTFEKTAGFQALVQFSD 160 (448)
Q Consensus 124 ~~~~e~l~~~f~~~------G~v~~v~~~~~~~~~~afVeF~~ 160 (448)
..+++.+.++++.| |.|..-.+.+-.. ..+||.+..
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~-~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLEP-RGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEEC-CEEEEEECC
Confidence 35566666666544 7777666655222 247777654
No 272
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.28 E-value=1.4e+02 Score=29.50 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEeecC-----C-CcceEEEEecCHHHHHHHHHHhhc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFG-KVVNTKCNVG-----A-NRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG-~I~~v~i~~~-----~-~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
..|.|+.||...|+++|.+-...|- .+....+.+. . -.+.|||.|.+.++.......+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 5689999999999999998776652 2222222111 1 146799999999997766666663
No 273
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.12 E-value=1.5e+02 Score=28.00 Aligned_cols=47 Identities=6% Similarity=0.177 Sum_probs=32.4
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEE-EccCCCeEEEEEcCCHHHH
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQALIQYPDVQTA 296 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i-~~~~~g~~afV~f~~~e~A 296 (448)
|++.||+.++-..+|.....+-|-+- ..| -....|- ||++|.+...+
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k-~flh~~~~~~~ 380 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGK-CFLHFGNRKGV 380 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcc-eeEecCCccCC
Confidence 44899999999999998888776542 222 2223343 99999886543
Done!