Query 013150
Match_columns 448
No_of_seqs 357 out of 2331
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 05:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 7.6E-43 2.6E-47 333.5 27.8 237 16-326 21-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 6.2E-42 2.1E-46 328.5 24.2 242 13-324 37-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 6.6E-32 2.3E-36 246.6 16.0 165 13-198 11-181 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 2E-30 6.9E-35 226.6 18.1 159 18-197 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-30 1.5E-34 225.2 18.3 159 16-195 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 8.2E-30 2.8E-34 223.0 18.8 157 16-195 1-167 (167)
7 4f02_A Polyadenylate-binding p 100.0 5.8E-30 2E-34 233.7 15.6 160 113-325 16-182 (213)
8 3pgw_A U1-A; protein-RNA compl 100.0 2.7E-29 9.4E-34 239.2 20.8 170 13-197 5-282 (282)
9 2cjk_A Nuclear polyadenylated 100.0 4.5E-30 1.5E-34 224.9 13.6 157 16-198 2-166 (167)
10 2qfj_A FBP-interacting repress 100.0 8.2E-30 2.8E-34 232.9 15.7 170 15-198 26-205 (216)
11 3nmr_A Cugbp ELAV-like family 100.0 2.1E-29 7.1E-34 222.2 17.7 162 16-196 2-175 (175)
12 1l3k_A Heterogeneous nuclear r 100.0 1.4E-29 4.8E-34 227.7 16.6 168 13-199 9-184 (196)
13 2adc_A Polypyrimidine tract-bi 100.0 5.7E-29 1.9E-33 229.7 20.0 170 12-197 29-227 (229)
14 3tyt_A Heterogeneous nuclear r 100.0 3.2E-29 1.1E-33 226.8 17.7 168 15-195 2-204 (205)
15 1fje_B Nucleolin RBD12, protei 100.0 2.3E-29 8E-34 222.2 13.9 164 12-198 8-174 (175)
16 3tyt_A Heterogeneous nuclear r 100.0 2.5E-28 8.5E-33 220.9 19.8 187 114-321 6-204 (205)
17 2g4b_A Splicing factor U2AF 65 100.0 8.8E-29 3E-33 217.7 16.2 155 16-196 3-172 (172)
18 1fxl_A Paraneoplastic encephal 100.0 2.2E-28 7.7E-33 213.8 18.7 155 114-321 4-167 (167)
19 2adc_A Polypyrimidine tract-bi 100.0 5.8E-28 2E-32 222.9 22.2 188 112-324 34-228 (229)
20 1qm9_A Polypyrimidine tract-bi 100.0 9.2E-29 3.1E-33 223.0 16.1 166 16-197 2-196 (198)
21 3md3_A Nuclear and cytoplasmic 100.0 2.4E-28 8.4E-33 213.3 17.9 157 114-323 2-166 (166)
22 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-27 4.4E-32 227.7 24.2 196 112-323 9-282 (282)
23 1b7f_A Protein (SXL-lethal pro 100.0 3.1E-28 1.1E-32 213.3 18.1 155 114-321 5-168 (168)
24 2yh0_A Splicing factor U2AF 65 100.0 2.3E-28 8E-33 220.1 17.1 167 15-198 2-194 (198)
25 1qm9_A Polypyrimidine tract-bi 100.0 7.5E-28 2.6E-32 217.0 19.5 186 114-324 5-197 (198)
26 2qfj_A FBP-interacting repress 100.0 4.2E-28 1.4E-32 221.5 17.3 169 113-325 29-206 (216)
27 3nmr_A Cugbp ELAV-like family 100.0 1.2E-27 4E-32 211.0 19.5 164 112-322 3-175 (175)
28 3smz_A Protein raver-1, ribonu 100.0 2.8E-27 9.6E-32 225.5 18.7 166 14-199 92-265 (284)
29 3sde_A Paraspeckle component 1 99.9 5.6E-27 1.9E-31 220.6 17.7 158 14-198 19-179 (261)
30 1l3k_A Heterogeneous nuclear r 99.9 7.5E-27 2.5E-31 209.9 16.3 164 111-325 12-184 (196)
31 2g4b_A Splicing factor U2AF 65 99.9 1.1E-26 3.7E-31 204.3 16.6 150 114-321 6-171 (172)
32 2ghp_A U4/U6 snRNA-associated 99.9 8.1E-27 2.8E-31 223.2 16.8 167 15-198 115-291 (292)
33 2yh0_A Splicing factor U2AF 65 99.9 3.2E-26 1.1E-30 206.0 19.0 175 113-325 5-195 (198)
34 2cjk_A Nuclear polyadenylated 99.9 6.6E-27 2.3E-31 204.7 13.9 154 113-324 4-166 (167)
35 1fje_B Nucleolin RBD12, protei 99.9 2.4E-27 8.1E-32 209.3 10.9 161 110-324 11-174 (175)
36 3sde_A Paraspeckle component 1 99.9 2.7E-25 9.3E-30 209.1 18.2 152 110-324 20-179 (261)
37 3zzy_A Polypyrimidine tract-bi 99.9 1E-25 3.5E-30 185.8 13.2 107 239-346 22-128 (130)
38 2e5i_A Heterogeneous nuclear r 99.9 1.2E-23 4.1E-28 172.8 14.1 102 241-344 21-122 (124)
39 1sjr_A Polypyrimidine tract-bi 99.9 2.3E-23 7.9E-28 178.2 13.1 111 240-351 41-151 (164)
40 3zzy_A Polypyrimidine tract-bi 99.8 7E-21 2.4E-25 156.9 12.0 105 108-220 24-128 (130)
41 3r27_A HnRNP L, heterogeneous 99.8 9.2E-21 3.1E-25 148.9 11.2 85 11-99 15-99 (100)
42 2i2y_A Fusion protein consists 99.8 1.9E-20 6.7E-25 160.7 13.8 139 148-325 10-149 (150)
43 4f25_A Polyadenylate-binding p 99.8 7.7E-21 2.6E-25 155.5 9.2 108 16-129 4-113 (115)
44 2cq1_A PTB-like protein L; RRM 99.8 3.3E-20 1.1E-24 147.3 12.4 94 5-102 3-96 (101)
45 2e5i_A Heterogeneous nuclear r 99.8 1.5E-19 5.3E-24 148.3 14.2 102 107-218 20-122 (124)
46 2kn4_A Immunoglobulin G-bindin 99.8 1.9E-19 6.6E-24 155.8 14.7 137 148-325 10-151 (158)
47 1wex_A Hypothetical protein (r 99.8 1.4E-19 4.8E-24 144.6 12.4 86 12-101 10-95 (104)
48 1sjq_A Polypyrimidine tract-bi 99.8 4.3E-20 1.5E-24 146.6 9.1 87 13-103 12-98 (105)
49 1sjr_A Polypyrimidine tract-bi 99.8 1.6E-19 5.4E-24 154.4 12.7 106 108-221 42-147 (164)
50 1x4d_A Matrin 3; structural ge 99.8 1.2E-19 4.1E-24 144.0 10.8 84 10-97 8-92 (102)
51 2ad9_A Polypyrimidine tract-bi 99.8 7.7E-20 2.6E-24 148.9 9.4 91 9-103 23-113 (119)
52 2i2y_A Fusion protein consists 99.8 3.1E-19 1.1E-23 153.2 13.1 130 53-198 11-148 (150)
53 2kn4_A Immunoglobulin G-bindin 99.8 8.3E-19 2.8E-23 151.8 14.1 134 51-198 9-150 (158)
54 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-19 6E-24 147.4 9.2 107 11-139 2-109 (115)
55 1x4f_A Matrin 3; structural ge 99.8 2.2E-19 7.7E-24 144.5 9.0 88 7-98 15-103 (112)
56 4fxv_A ELAV-like protein 1; RN 99.8 4E-19 1.4E-23 141.0 9.8 77 16-96 18-98 (99)
57 2lxi_A RNA-binding protein 10; 99.8 1.3E-19 4.3E-24 141.6 5.9 79 17-98 1-84 (91)
58 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.6E-23 140.6 10.1 81 14-98 3-87 (110)
59 2lkz_A RNA-binding protein 5; 99.8 8.5E-19 2.9E-23 137.6 8.3 82 15-96 7-94 (95)
60 2wbr_A GW182, gawky, LD47780P; 99.8 2.9E-18 1E-22 129.8 9.0 76 15-96 5-80 (89)
61 3r27_A HnRNP L, heterogeneous 99.7 6.2E-18 2.1E-22 132.8 10.9 79 241-326 19-99 (100)
62 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-17 3.8E-22 131.4 12.0 82 10-95 9-94 (94)
63 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4.1E-22 132.8 11.9 91 4-98 3-97 (100)
64 2cqc_A Arginine/serine-rich sp 99.7 1E-17 3.4E-22 131.9 10.7 86 7-96 5-94 (95)
65 2x1f_A MRNA 3'-END-processing 99.7 8.4E-18 2.9E-22 132.7 10.0 80 16-99 1-84 (96)
66 1x4a_A Splicing factor, argini 99.7 1.7E-17 5.7E-22 134.2 12.0 83 12-98 17-100 (109)
67 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8.6E-18 2.9E-22 129.4 9.6 79 13-95 3-85 (85)
68 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.6E-18 2.6E-22 130.3 9.1 80 14-97 3-86 (87)
69 4fxv_A ELAV-like protein 1; RN 99.7 1E-17 3.5E-22 132.8 9.5 76 242-323 18-98 (99)
70 1whw_A Hypothetical protein ri 99.7 2.1E-17 7.1E-22 131.1 11.3 83 13-99 4-90 (99)
71 2jvr_A Nucleolar protein 3; RN 99.7 7.2E-18 2.5E-22 136.0 8.5 84 10-97 21-105 (111)
72 2dnz_A Probable RNA-binding pr 99.7 1.6E-17 5.4E-22 130.8 10.2 82 14-99 2-87 (95)
73 2ywk_A Putative RNA-binding pr 99.7 1.1E-17 3.6E-22 131.7 9.2 83 10-96 9-94 (95)
74 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.5E-17 1.2E-21 130.9 12.2 84 12-99 10-95 (103)
75 1sjq_A Polypyrimidine tract-bi 99.7 9.5E-18 3.3E-22 133.1 8.8 81 241-328 14-96 (105)
76 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7.3E-22 132.1 10.9 87 9-99 7-95 (103)
77 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.3E-22 135.7 10.3 84 12-99 20-107 (115)
78 4f25_A Polyadenylate-binding p 99.7 8.8E-18 3E-22 137.2 8.7 76 113-198 6-83 (115)
79 2cq0_A Eukaryotic translation 99.7 2.5E-17 8.5E-22 131.7 11.1 83 12-98 10-96 (103)
80 3md1_A Nuclear and cytoplasmic 99.7 1.7E-17 5.8E-22 127.1 9.6 78 17-98 1-82 (83)
81 2dgs_A DAZ-associated protein 99.7 2.5E-17 8.4E-22 130.7 10.7 83 12-99 5-91 (99)
82 2cq3_A RNA-binding protein 9; 99.7 5.4E-17 1.9E-21 129.7 12.8 85 12-100 10-96 (103)
83 2cpf_A RNA binding motif prote 99.7 1.3E-17 4.4E-22 132.1 9.0 81 15-99 3-90 (98)
84 1x5u_A Splicing factor 3B subu 99.7 2.4E-17 8.3E-22 132.3 10.7 85 11-99 9-97 (105)
85 2khc_A Testis-specific RNP-typ 99.7 2.4E-17 8.1E-22 135.3 10.6 80 12-95 35-118 (118)
86 2dgo_A Cytotoxic granule-assoc 99.7 4.3E-17 1.5E-21 133.1 12.1 85 11-99 9-97 (115)
87 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.6E-17 8.8E-22 131.4 10.3 84 13-100 8-95 (102)
88 2cpj_A Non-POU domain-containi 99.7 2.4E-17 8.3E-22 130.8 10.0 81 12-98 10-90 (99)
89 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-17 4.8E-22 131.6 8.5 82 12-98 14-95 (97)
90 2dnh_A Bruno-like 5, RNA bindi 99.7 4.1E-17 1.4E-21 130.9 11.1 83 13-99 11-99 (105)
91 2cqd_A RNA-binding region cont 99.7 4.7E-17 1.6E-21 133.1 11.5 86 8-98 8-97 (116)
92 2la6_A RNA-binding protein FUS 99.7 2.7E-17 9.3E-22 130.5 9.7 83 9-95 5-99 (99)
93 1why_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 128.8 10.8 80 13-98 13-94 (97)
94 2kxn_B Transformer-2 protein h 99.7 2E-17 6.7E-22 137.8 9.2 83 11-97 40-126 (129)
95 2dnm_A SRP46 splicing factor; 99.7 2.6E-17 8.9E-22 131.6 9.6 83 12-98 8-94 (103)
96 1x5t_A Splicing factor 3B subu 99.7 1.9E-17 6.5E-22 130.5 8.6 81 15-99 3-88 (96)
97 1wi8_A EIF-4B, eukaryotic tran 99.7 5.7E-17 1.9E-21 129.9 11.5 83 11-99 9-96 (104)
98 2wbr_A GW182, gawky, LD47780P; 99.7 2.9E-17 1E-21 124.3 9.1 75 243-324 7-81 (89)
99 2hvz_A Splicing factor, argini 99.7 8.2E-18 2.8E-22 134.0 6.5 99 18-121 1-100 (101)
100 2jrs_A RNA-binding protein 39; 99.7 3E-17 1E-21 132.4 9.7 83 11-97 20-106 (108)
101 2dnq_A RNA-binding protein 4B; 99.7 4.9E-17 1.7E-21 126.6 10.5 79 13-99 4-82 (90)
102 2cph_A RNA binding motif prote 99.7 5.8E-17 2E-21 130.5 11.3 84 12-99 10-99 (107)
103 1wex_A Hypothetical protein (r 99.7 8.7E-17 3E-21 128.3 12.1 80 241-327 13-94 (104)
104 2ad9_A Polypyrimidine tract-bi 99.7 7.9E-17 2.7E-21 131.0 11.9 82 240-328 28-111 (119)
105 2db1_A Heterogeneous nuclear r 99.7 2.1E-17 7.1E-22 135.6 8.5 91 4-99 4-100 (118)
106 2dng_A Eukaryotic translation 99.7 6.1E-17 2.1E-21 129.4 11.1 86 8-99 6-95 (103)
107 2a3j_A U1 small nuclear ribonu 99.7 2.1E-17 7.3E-22 136.7 8.6 84 12-99 24-112 (127)
108 2dgv_A HnRNP M, heterogeneous 99.7 2.2E-17 7.6E-22 129.1 8.3 82 13-98 4-87 (92)
109 4a8x_A RNA-binding protein wit 99.7 4.6E-17 1.6E-21 126.1 9.7 79 15-97 2-85 (88)
110 1x4h_A RNA-binding protein 28; 99.7 1E-16 3.6E-21 129.9 12.3 89 11-99 9-103 (111)
111 2la4_A Nuclear and cytoplasmic 99.7 2.6E-17 8.8E-22 131.1 8.5 78 13-96 23-100 (101)
112 2fy1_A RNA-binding motif prote 99.7 4.6E-17 1.6E-21 133.1 10.0 83 14-100 4-89 (116)
113 1oo0_B CG8781-PA, drosophila Y 99.7 5.3E-17 1.8E-21 131.4 10.1 82 13-98 22-107 (110)
114 1x5s_A Cold-inducible RNA-bind 99.7 3E-17 1E-21 131.0 8.3 83 13-99 8-94 (102)
115 2err_A Ataxin-2-binding protei 99.7 4.1E-17 1.4E-21 131.8 9.0 81 13-97 25-107 (109)
116 2cpi_A CCR4-NOT transcription 99.7 6.2E-17 2.1E-21 131.2 10.0 82 13-98 11-102 (111)
117 1p27_B RNA-binding protein 8A; 99.7 4.5E-17 1.5E-21 130.9 9.0 80 14-97 20-103 (106)
118 2xnq_A Nuclear polyadenylated 99.7 9.2E-17 3.1E-21 126.9 10.5 80 10-97 15-95 (97)
119 2fc9_A NCL protein; structure 99.7 9.4E-17 3.2E-21 127.8 10.6 82 13-98 11-92 (101)
120 2dgt_A RNA-binding protein 30; 99.7 9.4E-17 3.2E-21 125.5 10.4 79 12-98 5-83 (92)
121 1nu4_A U1A RNA binding domain; 99.7 3.1E-17 1.1E-21 129.6 7.8 82 13-98 4-90 (97)
122 1s79_A Lupus LA protein; RRM, 99.7 2.6E-17 8.8E-22 131.3 7.3 79 13-96 7-88 (103)
123 1x4c_A Splicing factor, argini 99.7 1.7E-16 6E-21 127.9 12.3 80 14-100 12-96 (108)
124 1wg5_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 128.8 10.4 84 11-99 9-96 (104)
125 2dgp_A Bruno-like 4, RNA bindi 99.7 5.7E-17 2E-21 130.3 9.4 84 12-99 8-98 (106)
126 2do0_A HnRNP M, heterogeneous 99.7 1.5E-16 5.3E-21 129.5 12.0 82 13-98 11-95 (114)
127 2cq1_A PTB-like protein L; RRM 99.7 1.2E-16 4.3E-21 126.6 11.1 82 239-327 11-94 (101)
128 3ulh_A THO complex subunit 4; 99.7 7.5E-17 2.6E-21 129.8 9.9 80 12-95 24-106 (107)
129 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 129.5 7.8 83 11-97 9-95 (98)
130 2cqg_A TDP-43, TAR DNA-binding 99.7 9.9E-17 3.4E-21 128.2 10.4 87 7-99 5-95 (103)
131 2dh8_A DAZ-associated protein 99.7 6.1E-17 2.1E-21 129.9 9.1 84 11-99 10-97 (105)
132 2cq2_A Hypothetical protein LO 99.7 5.3E-17 1.8E-21 130.6 8.7 83 10-98 18-107 (114)
133 2dnp_A RNA-binding protein 14; 99.7 8.5E-17 2.9E-21 125.2 9.6 78 13-98 5-82 (90)
134 2ytc_A PRE-mRNA-splicing facto 99.7 9.3E-17 3.2E-21 123.5 9.7 77 13-95 8-85 (85)
135 3ns6_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 132.2 5.3 79 16-98 5-94 (100)
136 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-16 3.9E-21 126.1 10.3 81 14-98 6-91 (96)
137 1fjc_A Nucleolin RBD2, protein 99.7 6.8E-17 2.3E-21 127.4 9.0 84 10-98 9-92 (96)
138 2cpe_A RNA-binding protein EWS 99.7 1E-16 3.6E-21 130.4 10.2 84 12-99 10-105 (113)
139 2cpx_A Hypothetical protein FL 99.7 6.6E-17 2.2E-21 132.0 8.8 83 13-99 21-107 (115)
140 1x4e_A RNA binding motif, sing 99.7 2.7E-17 9.3E-22 126.6 6.1 77 14-94 2-82 (85)
141 2jvo_A Nucleolar protein 3; nu 99.7 1E-16 3.4E-21 129.2 9.7 79 12-98 26-104 (108)
142 3p5t_L Cleavage and polyadenyl 99.7 1.6E-17 5.4E-22 129.4 4.6 77 18-98 2-84 (90)
143 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-16 5.4E-21 134.3 11.2 84 13-100 38-125 (139)
144 3s7r_A Heterogeneous nuclear r 99.7 1.1E-16 3.7E-21 123.8 9.3 77 13-94 7-87 (87)
145 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-17 1E-21 130.6 6.2 83 9-97 11-98 (100)
146 2cpd_A Apobec-1 stimulating pr 99.7 3.6E-16 1.2E-20 124.0 12.5 79 12-98 10-90 (99)
147 1x4d_A Matrin 3; structural ge 99.7 8.7E-17 3E-21 127.4 8.8 77 241-324 13-92 (102)
148 2dhg_A TRNA selenocysteine ass 99.7 5.8E-17 2E-21 129.8 7.8 84 12-99 4-92 (104)
149 2nlw_A Eukaryotic translation 99.7 1.1E-16 3.7E-21 128.5 9.4 81 13-97 11-100 (105)
150 2div_A TRNA selenocysteine ass 99.7 4.9E-17 1.7E-21 129.0 7.2 81 13-97 5-94 (99)
151 2dgu_A Heterogeneous nuclear r 99.7 2.5E-16 8.4E-21 125.9 11.3 78 14-99 8-85 (103)
152 2cq4_A RNA binding motif prote 99.7 7.6E-17 2.6E-21 131.4 8.4 78 17-99 25-106 (114)
153 2cpy_A RNA-binding protein 12; 99.7 8.1E-17 2.8E-21 131.2 8.5 82 13-99 11-96 (114)
154 1x4g_A Nucleolysin TIAR; struc 99.7 1.5E-16 5.3E-21 128.5 10.1 81 13-99 21-101 (109)
155 3ucg_A Polyadenylate-binding p 99.7 1E-16 3.5E-21 124.4 8.6 76 16-96 5-84 (89)
156 2kt5_A RNA and export factor-b 99.7 2.3E-16 7.9E-21 130.6 11.2 82 13-98 31-115 (124)
157 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-16 4.6E-21 128.8 9.4 81 13-98 21-105 (109)
158 2ek1_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 128.1 6.5 78 14-95 12-93 (95)
159 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.8E-21 129.7 8.8 78 16-99 9-86 (111)
160 3ex7_B RNA-binding protein 8A; 99.7 1.3E-16 4.6E-21 132.4 9.1 83 13-99 18-104 (126)
161 2krb_A Eukaryotic translation 99.7 4.2E-17 1.4E-21 124.3 5.3 71 17-91 1-80 (81)
162 1x5p_A Negative elongation fac 99.7 7E-16 2.4E-20 121.8 12.4 80 12-99 10-89 (97)
163 3s8s_A Histone-lysine N-methyl 99.7 2.6E-16 9E-21 127.1 10.1 79 241-325 4-87 (110)
164 3n9u_C Cleavage and polyadenyl 99.7 1.1E-16 3.7E-21 137.7 8.2 79 16-98 54-138 (156)
165 2fc8_A NCL protein; structure 99.7 2.8E-16 9.7E-21 125.3 10.1 85 11-99 9-94 (102)
166 2m2b_A RNA-binding protein 10; 99.7 8.5E-17 2.9E-21 134.5 7.1 85 13-98 19-109 (131)
167 2lea_A Serine/arginine-rich sp 99.7 9.4E-17 3.2E-21 134.8 7.3 119 152-325 5-128 (135)
168 2dgu_A Heterogeneous nuclear r 99.7 7.2E-16 2.5E-20 123.2 12.1 76 242-326 10-85 (103)
169 2cqh_A IGF-II mRNA-binding pro 99.7 9.1E-17 3.1E-21 125.9 6.7 80 13-99 4-85 (93)
170 3d2w_A TAR DNA-binding protein 99.7 1.9E-16 6.4E-21 122.9 8.4 80 12-98 6-85 (89)
171 1wf1_A RNA-binding protein RAL 99.7 3E-16 1E-20 127.0 10.0 78 13-98 23-101 (110)
172 2e44_A Insulin-like growth fac 99.7 2.2E-16 7.6E-21 124.4 8.9 83 12-98 10-93 (96)
173 2dgw_A Probable RNA-binding pr 99.7 2.7E-16 9.4E-21 122.6 9.3 79 13-97 6-87 (91)
174 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4E-16 1.4E-20 131.9 11.1 79 12-94 58-140 (140)
175 1p1t_A Cleavage stimulation fa 99.7 7.4E-17 2.5E-21 129.2 6.0 81 15-99 6-90 (104)
176 2kvi_A Nuclear polyadenylated 99.7 1.5E-16 5.1E-21 125.5 7.5 78 13-98 6-84 (96)
177 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.9E-21 133.9 7.2 83 12-99 39-127 (136)
178 2dis_A Unnamed protein product 99.7 1.7E-16 5.8E-21 128.2 7.9 84 14-99 5-94 (109)
179 1wez_A HnRNP H', FTP-3, hetero 99.7 2.3E-16 7.8E-21 125.7 8.2 81 12-98 10-93 (102)
180 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.3E-15 4.5E-20 121.6 12.5 80 241-326 13-95 (103)
181 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.9E-16 1.3E-20 134.6 10.0 82 13-98 35-120 (156)
182 1x4c_A Splicing factor, argini 99.6 1.2E-15 4.1E-20 123.0 12.2 76 242-325 14-94 (108)
183 2e5h_A Zinc finger CCHC-type a 99.6 6.3E-16 2.2E-20 121.3 10.3 76 241-322 14-94 (94)
184 1fj7_A Nucleolin RBD1, protein 99.6 7.6E-17 2.6E-21 128.4 5.1 82 12-98 12-96 (101)
185 1x4b_A Heterogeneous nuclear r 99.6 1.7E-16 5.8E-21 129.7 7.2 79 16-99 26-108 (116)
186 1x5o_A RNA binding motif, sing 99.6 7.3E-16 2.5E-20 125.5 10.9 81 13-97 21-112 (114)
187 1wg1_A KIAA1579 protein, homol 99.6 3.5E-16 1.2E-20 121.1 8.4 76 16-98 4-79 (88)
188 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.8E-16 1.6E-20 119.5 9.0 75 242-322 6-85 (85)
189 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.7E-16 1.6E-20 135.4 10.0 139 156-326 11-154 (165)
190 1why_A Hypothetical protein ri 99.6 1.2E-15 4.1E-20 120.4 11.4 78 241-325 15-94 (97)
191 2lxi_A RNA-binding protein 10; 99.6 1.1E-16 3.9E-21 124.7 5.3 77 243-325 1-84 (91)
192 2dnn_A RNA-binding protein 12; 99.6 4.7E-16 1.6E-20 125.1 9.0 78 15-98 14-94 (109)
193 2dgx_A KIAA0430 protein; RRM d 99.6 9.6E-16 3.3E-20 120.8 10.6 78 242-325 8-91 (96)
194 2cq3_A RNA-binding protein 9; 99.6 2.1E-15 7.1E-20 120.4 12.7 80 241-326 13-95 (103)
195 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.8E-16 2.3E-20 119.2 9.5 77 242-324 5-86 (87)
196 2dnq_A RNA-binding protein 4B; 99.6 1.2E-15 4E-20 118.7 10.9 75 242-325 7-81 (90)
197 2diu_A KIAA0430 protein; struc 99.6 1.2E-15 4.1E-20 116.5 10.4 75 242-327 7-87 (96)
198 2mss_A Protein (musashi1); RNA 99.6 1.5E-16 5E-21 119.4 5.3 71 19-94 1-75 (75)
199 1x4f_A Matrin 3; structural ge 99.6 4.2E-16 1.4E-20 125.3 8.3 78 241-325 23-103 (112)
200 1x5s_A Cold-inducible RNA-bind 99.6 1.5E-15 5.3E-20 120.9 11.4 79 241-325 10-93 (102)
201 2diu_A KIAA0430 protein; struc 99.6 5.6E-16 1.9E-20 118.3 8.3 76 13-98 4-85 (96)
202 2dgo_A Cytotoxic granule-assoc 99.6 2.4E-15 8.2E-20 122.6 12.8 80 241-326 13-97 (115)
203 1x4a_A Splicing factor, argini 99.6 1.6E-15 5.6E-20 122.4 11.6 79 241-325 20-100 (109)
204 2x1f_A MRNA 3'-END-processing 99.6 8.4E-16 2.9E-20 121.1 9.6 79 243-327 2-85 (96)
205 1whw_A Hypothetical protein ri 99.6 1.4E-15 4.7E-20 120.6 10.8 78 242-325 7-89 (99)
206 1wel_A RNA-binding protein 12; 99.6 1.6E-16 5.5E-21 131.5 5.6 83 12-99 20-106 (124)
207 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-16 4.9E-21 128.2 5.2 83 12-99 6-94 (107)
208 2hvz_A Splicing factor, argini 99.6 1.4E-15 4.7E-20 121.0 10.8 75 245-325 2-76 (101)
209 3lqv_A PRE-mRNA branch site pr 99.6 5.7E-16 1.9E-20 126.4 8.7 100 113-271 9-109 (115)
210 3md1_A Nuclear and cytoplasmic 99.6 1.1E-15 3.7E-20 116.9 9.5 76 244-325 2-82 (83)
211 2a3j_A U1 small nuclear ribonu 99.6 9.6E-16 3.3E-20 126.8 9.8 82 241-328 27-114 (127)
212 2lkz_A RNA-binding protein 5; 99.6 6.5E-16 2.2E-20 121.1 8.3 75 243-323 9-94 (95)
213 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.2E-20 120.3 10.6 78 241-325 13-90 (99)
214 1wf0_A TDP-43, TAR DNA-binding 99.6 4.4E-16 1.5E-20 120.6 7.1 79 14-99 2-80 (88)
215 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.7E-16 3.3E-20 122.1 9.3 80 241-326 10-94 (102)
216 2jwn_A Embryonic polyadenylate 99.6 5E-16 1.7E-20 128.5 7.8 76 17-97 36-115 (124)
217 2lea_A Serine/arginine-rich sp 99.6 1.8E-16 6.3E-21 133.0 5.2 82 13-98 43-128 (135)
218 2cph_A RNA binding motif prote 99.6 2.5E-15 8.6E-20 120.8 11.6 79 241-325 13-98 (107)
219 2dnz_A Probable RNA-binding pr 99.6 2.2E-15 7.4E-20 118.4 10.9 78 242-325 4-86 (95)
220 1x5u_A Splicing factor 3B subu 99.6 2.3E-15 7.9E-20 120.6 11.2 80 241-326 13-97 (105)
221 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.4E-16 8.1E-21 118.8 5.0 72 18-94 1-76 (77)
222 2dnh_A Bruno-like 5, RNA bindi 99.6 3E-15 1E-19 119.9 11.8 82 241-325 13-98 (105)
223 2ki2_A SS-DNA binding protein 99.6 9.1E-17 3.1E-21 125.0 2.6 76 18-98 2-81 (90)
224 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.9E-20 116.8 9.3 75 241-322 10-85 (85)
225 2cq2_A Hypothetical protein LO 99.6 1.1E-15 3.8E-20 122.9 8.9 82 241-325 23-107 (114)
226 2err_A Ataxin-2-binding protei 99.6 1.5E-15 5E-20 122.6 9.7 79 241-325 27-108 (109)
227 1whx_A Hypothetical protein ri 99.6 1.3E-15 4.4E-20 123.4 9.3 76 243-325 10-85 (111)
228 2ywk_A Putative RNA-binding pr 99.6 1.1E-15 3.6E-20 120.2 8.6 77 241-323 14-94 (95)
229 2hgm_A HNRPF protein, heteroge 99.6 5.4E-16 1.8E-20 127.8 7.1 81 13-99 38-123 (126)
230 2cqc_A Arginine/serine-rich sp 99.6 1.4E-15 4.8E-20 119.5 9.2 77 241-323 13-94 (95)
231 2e5g_A U6 snRNA-specific termi 99.6 1.6E-15 5.4E-20 119.0 9.4 80 14-99 5-84 (94)
232 2do4_A Squamous cell carcinoma 99.6 4E-15 1.4E-19 118.1 11.8 79 241-325 15-97 (100)
233 2cpz_A CUG triplet repeat RNA- 99.6 3.1E-15 1.1E-19 121.9 11.4 79 241-325 23-106 (115)
234 2dgs_A DAZ-associated protein 99.6 3.2E-15 1.1E-19 118.4 11.1 77 242-325 9-90 (99)
235 2xnq_A Nuclear polyadenylated 99.6 2.8E-15 9.4E-20 118.3 10.6 75 241-324 20-95 (97)
236 1x4g_A Nucleolysin TIAR; struc 99.6 2.6E-15 9E-20 121.2 10.7 77 242-325 24-100 (109)
237 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.4E-15 4.9E-20 132.3 9.6 82 14-99 69-154 (165)
238 2dha_A FLJ20171 protein; RRM d 99.6 3.4E-16 1.2E-20 128.7 5.1 81 14-99 20-107 (123)
239 2la4_A Nuclear and cytoplasmic 99.6 1.4E-15 4.6E-20 121.1 8.5 76 242-324 26-101 (101)
240 2fy1_A RNA-binding motif prote 99.6 6.9E-15 2.4E-19 120.0 12.9 78 242-325 6-87 (116)
241 2d9p_A Polyadenylate-binding p 99.6 2.7E-15 9.4E-20 119.7 10.2 79 241-325 13-94 (103)
242 1x5t_A Splicing factor 3B subu 99.6 1.7E-15 5.7E-20 119.3 8.8 78 242-325 4-87 (96)
243 2cq0_A Eukaryotic translation 99.6 2.4E-15 8.1E-20 120.1 9.6 79 241-325 13-96 (103)
244 3egn_A RNA-binding protein 40; 99.6 1.1E-15 3.8E-20 129.7 8.1 82 13-98 41-131 (143)
245 2jvr_A Nucleolar protein 3; RN 99.6 1.5E-15 5.1E-20 122.4 8.4 76 243-324 28-105 (111)
246 2dgt_A RNA-binding protein 30; 99.6 3.4E-15 1.2E-19 116.6 10.3 75 242-325 9-83 (92)
247 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-15 5.3E-20 123.5 8.6 75 14-95 5-86 (114)
248 2dgv_A HnRNP M, heterogeneous 99.6 2.1E-15 7.3E-20 117.7 9.1 78 242-325 7-87 (92)
249 2cpf_A RNA binding motif prote 99.6 1.6E-15 5.5E-20 119.9 8.5 78 242-325 4-89 (98)
250 2la6_A RNA-binding protein FUS 99.6 3.9E-15 1.3E-19 118.0 10.7 76 241-322 11-99 (99)
251 2hgn_A Heterogeneous nuclear r 99.6 2.2E-16 7.5E-21 132.6 3.6 81 12-98 41-124 (139)
252 2dnp_A RNA-binding protein 14; 99.6 3.9E-15 1.3E-19 115.7 10.3 75 242-325 8-82 (90)
253 2dnm_A SRP46 splicing factor; 99.6 2.5E-15 8.4E-20 120.0 9.3 78 242-325 12-94 (103)
254 4a8x_A RNA-binding protein wit 99.6 2.8E-15 9.6E-20 115.9 9.4 77 243-325 4-86 (88)
255 2kvi_A Nuclear polyadenylated 99.6 3.2E-15 1.1E-19 117.8 9.8 76 241-325 8-84 (96)
256 2jvo_A Nucleolar protein 3; nu 99.6 2.5E-15 8.7E-20 121.0 9.4 76 241-325 29-104 (108)
257 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.4E-20 117.1 7.8 72 14-92 3-85 (87)
258 1p27_B RNA-binding protein 8A; 99.6 5.1E-15 1.8E-19 118.8 10.9 78 242-325 22-104 (106)
259 1iqt_A AUF1, heterogeneous nuc 99.6 3.6E-16 1.2E-20 117.2 3.6 71 19-94 1-75 (75)
260 2jrs_A RNA-binding protein 39; 99.6 5.3E-15 1.8E-19 119.1 10.7 78 241-324 24-106 (108)
261 2dgp_A Bruno-like 4, RNA bindi 99.6 4.6E-15 1.6E-19 119.1 10.3 79 241-325 11-97 (106)
262 2kxn_B Transformer-2 protein h 99.6 3E-15 1E-19 124.6 9.3 79 241-325 44-127 (129)
263 1oo0_B CG8781-PA, drosophila Y 99.6 4.1E-15 1.4E-19 120.2 9.9 79 241-325 24-107 (110)
264 2khc_A Testis-specific RNP-typ 99.6 3.9E-15 1.3E-19 122.0 9.9 77 240-322 37-118 (118)
265 2e5j_A Methenyltetrahydrofolat 99.6 9E-15 3.1E-19 115.4 11.5 77 242-325 18-95 (97)
266 2f3j_A RNA and export factor b 99.6 2E-15 6.8E-20 132.7 8.5 82 13-98 84-168 (177)
267 2div_A TRNA selenocysteine ass 99.6 3.4E-15 1.2E-19 118.2 8.9 78 242-325 8-95 (99)
268 2cpi_A CCR4-NOT transcription 99.6 2.2E-15 7.4E-20 122.1 7.9 78 242-325 14-102 (111)
269 3ns6_A Eukaryotic translation 99.6 1.5E-15 5.2E-20 120.5 6.4 76 243-324 6-93 (100)
270 1nu4_A U1A RNA binding domain; 99.6 3.6E-15 1.2E-19 117.6 8.5 80 241-326 6-91 (97)
271 2xs2_A Deleted in azoospermia- 99.6 8.7E-16 3E-20 122.4 5.0 79 14-98 6-87 (102)
272 3ex7_B RNA-binding protein 8A; 99.6 5.8E-15 2E-19 122.4 10.2 78 242-325 21-103 (126)
273 3q2s_C Cleavage and polyadenyl 99.6 1.1E-15 3.8E-20 140.0 6.4 79 16-98 67-151 (229)
274 1x4h_A RNA-binding protein 28; 99.6 1E-14 3.5E-19 118.0 11.4 79 241-325 13-102 (111)
275 2lcw_A RNA-binding protein FUS 99.4 1.4E-16 4.6E-21 130.3 0.0 82 14-99 4-97 (116)
276 3pgw_S U1-70K; protein-RNA com 99.6 1.5E-15 5.2E-20 152.1 7.6 78 242-325 101-183 (437)
277 2e44_A Insulin-like growth fac 99.6 1.1E-14 3.6E-19 114.7 10.8 79 242-325 14-93 (96)
278 2do0_A HnRNP M, heterogeneous 99.6 2.5E-14 8.6E-19 116.3 13.4 80 241-325 13-95 (114)
279 2bz2_A Negative elongation fac 99.6 3.9E-15 1.3E-19 122.4 8.5 78 13-98 35-112 (121)
280 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-14 4.5E-19 122.4 12.0 79 241-325 40-123 (139)
281 2cqd_A RNA-binding region cont 99.6 1.3E-14 4.5E-19 118.4 11.6 78 240-324 14-96 (116)
282 2kt5_A RNA and export factor-b 99.6 1.6E-14 5.6E-19 119.3 12.1 79 241-325 33-115 (124)
283 3p5t_L Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 117.8 5.7 75 245-325 3-84 (90)
284 3beg_B Splicing factor, argini 99.6 2.4E-15 8.2E-20 122.6 6.7 75 16-97 15-94 (115)
285 2pe8_A Splicing factor 45; RRM 99.6 9.9E-15 3.4E-19 116.5 10.1 83 14-100 5-97 (105)
286 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.8E-19 114.7 11.0 76 241-325 13-90 (99)
287 2dhg_A TRNA selenocysteine ass 99.6 5.6E-15 1.9E-19 118.1 8.7 78 242-325 8-91 (104)
288 3ulh_A THO complex subunit 4; 99.6 1.5E-14 5.2E-19 116.2 11.0 76 241-322 27-106 (107)
289 1p1t_A Cleavage stimulation fa 99.6 5.3E-15 1.8E-19 118.2 8.2 78 243-326 8-90 (104)
290 2cpe_A RNA-binding protein EWS 99.6 8.4E-15 2.9E-19 119.0 9.3 79 241-325 13-104 (113)
291 2cqh_A IGF-II mRNA-binding pro 99.6 5.4E-15 1.8E-19 115.7 7.7 76 242-325 7-84 (93)
292 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.8E-19 117.7 9.7 75 242-325 26-101 (110)
293 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.6E-19 116.5 9.4 76 242-325 14-95 (104)
294 3ucg_A Polyadenylate-binding p 99.6 9.4E-15 3.2E-19 113.2 8.6 75 243-324 6-85 (89)
295 1wg1_A KIAA1579 protein, homol 99.6 9.8E-15 3.4E-19 112.9 8.4 77 243-327 5-81 (88)
296 2m2b_A RNA-binding protein 10; 99.5 1.2E-14 4.3E-19 121.3 9.4 79 241-326 21-110 (131)
297 2dit_A HIV TAT specific factor 99.5 1.8E-14 6.3E-19 116.7 10.1 82 13-98 11-103 (112)
298 3q2s_C Cleavage and polyadenyl 99.5 2.1E-15 7.2E-20 138.2 4.8 79 243-327 68-153 (229)
299 2dis_A Unnamed protein product 99.5 2.2E-14 7.6E-19 115.6 10.3 78 242-325 7-93 (109)
300 2dng_A Eukaryotic translation 99.5 1.7E-14 5.7E-19 115.1 9.4 77 241-325 13-94 (103)
301 2cqp_A RNA-binding protein 12; 99.5 8E-15 2.7E-19 115.8 7.2 77 242-324 14-95 (98)
302 1x5p_A Negative elongation fac 99.5 4.9E-14 1.7E-18 111.1 11.6 76 241-325 13-88 (97)
303 1s79_A Lupus LA protein; RRM, 99.5 1.3E-14 4.4E-19 115.6 8.1 74 243-323 11-88 (103)
304 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-14 7.4E-19 121.1 10.0 75 241-321 61-140 (140)
305 1x4e_A RNA binding motif, sing 99.5 3.2E-15 1.1E-19 114.8 4.2 75 242-322 4-83 (85)
306 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.5E-15 1.5E-19 117.8 5.2 76 241-324 17-98 (100)
307 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.3E-14 1.1E-18 122.5 10.9 78 242-325 38-120 (156)
308 2dh8_A DAZ-associated protein 99.5 1.8E-14 6E-19 115.4 8.5 78 241-325 14-96 (105)
309 2mss_A Protein (musashi1); RNA 99.5 9.4E-15 3.2E-19 109.3 6.5 69 248-321 2-75 (75)
310 3n9u_C Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 125.2 7.4 78 243-326 55-139 (156)
311 2nlw_A Eukaryotic translation 99.5 2.9E-14 9.9E-19 114.2 9.3 78 242-324 14-100 (105)
312 2ek1_A RNA-binding protein 12; 99.5 5.9E-15 2E-19 115.9 5.0 75 242-322 14-93 (95)
313 2cq4_A RNA binding motif prote 99.5 1.8E-14 6.3E-19 117.2 8.1 76 243-325 25-105 (114)
314 3s7r_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 109.7 9.0 74 241-321 9-87 (87)
315 3beg_B Splicing factor, argini 99.5 2.4E-14 8.1E-19 116.7 8.7 73 243-323 16-93 (115)
316 2fc9_A NCL protein; structure 99.5 3.2E-14 1.1E-18 113.0 8.9 76 241-325 13-92 (101)
317 2cpx_A Hypothetical protein FL 99.5 3.1E-14 1.1E-18 116.0 9.0 78 242-325 24-106 (115)
318 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-14 4.3E-19 114.3 6.4 78 242-325 15-92 (96)
319 3d2w_A TAR DNA-binding protein 99.5 3.2E-14 1.1E-18 110.2 8.6 77 241-325 9-85 (89)
320 2jwn_A Embryonic polyadenylate 99.5 2.3E-14 7.7E-19 118.5 8.2 76 243-325 36-116 (124)
321 1x5o_A RNA binding motif, sing 99.5 1.4E-13 4.9E-18 111.8 12.8 78 241-324 23-112 (114)
322 2e5g_A U6 snRNA-specific termi 99.5 3.4E-14 1.2E-18 111.3 8.6 76 243-325 8-83 (94)
323 3pgw_S U1-70K; protein-RNA com 99.5 3.6E-14 1.2E-18 142.1 10.6 82 13-98 98-183 (437)
324 2ki2_A SS-DNA binding protein 99.5 7.2E-15 2.4E-19 114.2 4.2 74 245-325 3-81 (90)
325 2voo_A Lupus LA protein; RNA-b 99.5 3.5E-14 1.2E-18 126.6 8.9 75 17-96 109-186 (193)
326 3u1l_A PRE-mRNA-splicing facto 99.5 2.5E-14 8.7E-19 130.4 7.9 79 14-98 131-230 (240)
327 2dgw_A Probable RNA-binding pr 99.5 1.4E-13 4.7E-18 107.1 11.0 75 242-324 9-87 (91)
328 2rs2_A Musashi-1, RNA-binding 99.5 4.6E-14 1.6E-18 113.8 8.4 77 242-325 24-105 (109)
329 2pe8_A Splicing factor 45; RRM 99.5 6.1E-14 2.1E-18 111.9 8.7 79 241-325 6-95 (105)
330 2bz2_A Negative elongation fac 99.5 9.9E-14 3.4E-18 113.9 10.2 76 241-325 37-112 (121)
331 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.7E-14 9.1E-19 107.4 6.2 70 245-321 2-76 (77)
332 2j8a_A Histone-lysine N-methyl 99.5 2.5E-14 8.6E-19 115.5 6.4 76 18-97 3-96 (136)
333 2db1_A Heterogeneous nuclear r 99.5 5.4E-14 1.9E-18 115.1 8.5 79 241-326 15-100 (118)
334 2krb_A Eukaryotic translation 99.5 2E-14 6.7E-19 109.3 5.3 65 244-311 2-75 (81)
335 1wg5_A Heterogeneous nuclear r 99.5 1.3E-13 4.4E-18 110.2 10.2 78 242-326 14-96 (104)
336 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-13 5.5E-18 109.4 10.7 77 241-325 13-94 (103)
337 1x4b_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 114.8 7.9 76 243-325 27-107 (116)
338 2cpy_A RNA-binding protein 12; 99.5 5.9E-14 2E-18 114.1 7.4 79 242-327 14-97 (114)
339 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-14 1.2E-18 112.8 5.9 77 242-325 16-96 (101)
340 1wez_A HnRNP H', FTP-3, hetero 99.5 8.6E-14 2.9E-18 110.7 7.9 76 242-325 14-93 (102)
341 3tht_A Alkylated DNA repair pr 99.5 3.9E-13 1.3E-17 129.2 13.8 84 8-97 9-99 (345)
342 3egn_A RNA-binding protein 40; 99.5 1.1E-13 3.6E-18 117.4 8.8 79 241-325 43-131 (143)
343 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 126.2 9.3 78 241-325 132-230 (240)
344 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4.1E-18 110.3 8.3 82 14-99 2-99 (105)
345 2fc8_A NCL protein; structure 99.5 1.7E-13 5.8E-18 109.0 8.9 76 241-325 13-93 (102)
346 2hgl_A HNRPF protein, heteroge 99.5 7.3E-14 2.5E-18 116.8 7.0 78 242-326 43-127 (136)
347 2f3j_A RNA and export factor b 99.5 2.3E-13 8E-18 119.4 10.5 79 241-325 86-168 (177)
348 1wel_A RNA-binding protein 12; 99.5 5.8E-14 2E-18 116.0 5.9 77 242-325 24-105 (124)
349 2lmi_A GRSF-1, G-rich sequence 99.4 4.7E-14 1.6E-18 113.3 4.6 78 242-326 10-94 (107)
350 1wf0_A TDP-43, TAR DNA-binding 99.4 7.5E-14 2.6E-18 107.9 5.2 74 242-325 4-79 (88)
351 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.6E-18 104.6 7.5 70 242-319 5-85 (87)
352 1iqt_A AUF1, heterogeneous nuc 99.4 1.1E-13 3.6E-18 103.5 4.9 68 249-321 3-75 (75)
353 2lcw_A RNA-binding protein FUS 99.1 1.6E-14 5.4E-19 117.9 0.0 78 242-325 6-96 (116)
354 2dnn_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 107.9 8.1 75 243-325 16-94 (109)
355 2dit_A HIV TAT specific factor 99.4 1E-12 3.6E-17 106.3 10.5 79 241-325 13-103 (112)
356 3v4m_A Splicing factor U2AF 65 99.4 4.8E-13 1.6E-17 106.8 8.3 78 242-325 4-98 (105)
357 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.1E-12 3.6E-17 103.5 9.7 76 16-98 9-91 (100)
358 3ue2_A Poly(U)-binding-splicin 99.4 5.4E-13 1.9E-17 108.5 8.2 83 14-100 17-112 (118)
359 2hgn_A Heterogeneous nuclear r 99.4 2E-13 6.7E-18 114.6 4.0 76 242-325 45-124 (139)
360 3s6e_A RNA-binding protein 39; 99.4 1.7E-12 5.7E-17 104.9 9.3 82 14-99 4-95 (114)
361 2xs2_A Deleted in azoospermia- 99.4 4.4E-13 1.5E-17 106.6 5.5 75 243-325 9-87 (102)
362 3ue2_A Poly(U)-binding-splicin 99.4 1.3E-12 4.4E-17 106.3 8.3 78 242-325 19-110 (118)
363 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.2E-17 103.1 7.4 65 255-325 27-91 (100)
364 2dha_A FLJ20171 protein; RRM d 99.4 4.6E-13 1.6E-17 109.9 4.9 79 242-327 22-108 (123)
365 2hgm_A HNRPF protein, heteroge 99.3 7.1E-13 2.4E-17 109.0 5.8 76 242-325 41-122 (126)
366 3s6e_A RNA-binding protein 39; 99.3 3.1E-12 1.1E-16 103.3 9.4 78 242-325 6-94 (114)
367 2dnl_A Cytoplasmic polyadenyla 99.3 4.9E-12 1.7E-16 102.7 8.7 72 242-322 7-86 (114)
368 1jmt_A Splicing factor U2AF 35 99.3 5.4E-13 1.8E-17 106.3 2.7 69 22-94 20-103 (104)
369 1jmt_A Splicing factor U2AF 35 99.3 7.8E-13 2.7E-17 105.4 3.4 68 250-321 20-103 (104)
370 3tht_A Alkylated DNA repair pr 99.3 4.8E-12 1.7E-16 121.6 9.4 80 241-323 16-98 (345)
371 2j8a_A Histone-lysine N-methyl 99.3 5.3E-12 1.8E-16 102.0 6.7 75 244-324 3-96 (136)
372 2voo_A Lupus LA protein; RNA-b 99.2 1.5E-11 5.3E-16 109.4 7.8 74 243-323 109-186 (193)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 5.1E-11 1.7E-15 90.1 9.0 76 241-324 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 4.4E-11 1.5E-15 96.7 8.8 79 14-96 15-95 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 4.2E-10 1.4E-14 85.1 7.6 75 14-97 4-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.3E-09 4.5E-14 88.0 9.6 75 241-322 16-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 7E-10 2.4E-14 84.2 7.4 75 239-321 11-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 2.6E-09 9E-14 81.1 5.9 74 12-94 10-92 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.7 6.6E-08 2.3E-12 74.7 8.6 70 244-320 22-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.7 2.9E-08 9.8E-13 90.2 7.9 64 258-325 142-214 (222)
381 3dxb_A Thioredoxin N-terminall 98.7 4.5E-08 1.6E-12 88.9 9.1 83 14-100 121-216 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.3E-06 4.5E-11 67.6 8.4 70 110-193 21-95 (117)
383 1wey_A Calcipressin 1; structu 98.0 8.7E-06 3E-10 62.9 6.3 75 244-325 6-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.8 8E-05 2.7E-09 57.2 7.6 70 16-94 7-81 (104)
385 1whv_A Poly(A)-specific ribonu 97.6 0.00023 7.7E-09 54.0 8.0 56 16-76 15-70 (100)
386 1wey_A Calcipressin 1; structu 97.5 0.00018 6.1E-09 55.5 6.3 76 17-98 5-85 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.4 0.00065 2.2E-08 53.9 8.5 69 246-320 25-93 (119)
388 3ctr_A Poly(A)-specific ribonu 97.3 0.00029 9.9E-09 53.6 5.4 55 17-76 6-60 (101)
389 1whv_A Poly(A)-specific ribonu 97.3 0.00096 3.3E-08 50.5 7.4 49 252-304 22-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.2 0.0016 5.4E-08 49.4 8.3 60 18-77 2-67 (91)
391 2dhx_A Poly (ADP-ribose) polym 96.9 0.0045 1.6E-07 47.5 8.5 68 243-320 8-80 (104)
392 1uw4_A UPF3X; nonsense mediate 96.8 0.01 3.5E-07 44.9 9.4 75 250-324 6-88 (91)
393 3ctr_A Poly(A)-specific ribonu 96.6 0.0029 1E-07 48.1 4.9 49 252-304 12-60 (101)
394 1wwh_A Nucleoporin 35, nucleop 96.5 0.0066 2.3E-07 48.1 7.2 58 111-175 25-82 (119)
395 2l08_A Regulator of nonsense t 96.5 0.0095 3.3E-07 45.4 7.3 63 15-77 7-75 (97)
396 3pq1_A Poly(A) RNA polymerase; 96.1 0.0023 7.8E-08 63.5 2.7 56 17-74 53-108 (464)
397 3pq1_A Poly(A) RNA polymerase; 95.5 0.0081 2.8E-07 59.5 3.9 54 244-301 54-107 (464)
398 3p3d_A Nucleoporin 53; structu 94.9 0.023 8E-07 45.6 4.1 72 111-196 8-97 (132)
399 3p3d_A Nucleoporin 53; structu 94.7 0.022 7.4E-07 45.8 3.5 72 248-324 10-99 (132)
400 2l08_A Regulator of nonsense t 94.6 0.054 1.8E-06 41.2 5.3 76 248-323 12-95 (97)
401 3d45_A Poly(A)-specific ribonu 90.5 0.68 2.3E-05 46.6 8.3 56 16-76 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 84.4 2 6.7E-05 43.3 7.4 56 244-306 441-496 (507)
403 4eyt_A Telomerase associated p 73.6 24 0.00082 25.8 8.3 57 113-174 13-69 (129)
404 4eyt_A Telomerase associated p 66.8 35 0.0012 25.0 8.3 59 14-76 9-67 (129)
405 2g0c_A ATP-dependent RNA helic 59.0 4.7 0.00016 28.7 2.1 68 246-322 3-75 (76)
406 3ts2_A Protein LIN-28 homolog 45.0 7.1 0.00024 32.1 1.2 29 31-63 1-29 (148)
407 4e8u_A Putative uncharacterize 38.8 41 0.0014 28.1 4.9 49 19-67 14-74 (172)
408 2g0c_A ATP-dependent RNA helic 36.2 92 0.0031 21.6 6.0 68 113-195 3-74 (76)
409 3pgw_B SM B; protein-RNA compl 30.6 99 0.0034 27.1 6.2 8 187-194 14-21 (231)
410 2e5p_A Protein PHF1, PHD finge 26.4 50 0.0017 22.7 2.8 20 42-65 28-47 (68)
411 2eqj_A Metal-response element- 24.6 56 0.0019 22.5 2.8 20 42-65 32-51 (66)
412 3ced_A Methionine import ATP-b 24.4 82 0.0028 23.4 4.1 63 15-77 18-87 (98)
413 4bby_A Alkyldihydroxyacetoneph 23.6 63 0.0022 33.4 4.4 54 23-76 349-409 (658)
414 2m0o_A PHD finger protein 1; t 23.1 61 0.0021 22.9 2.8 20 42-65 45-64 (79)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=7.6e-43 Score=333.52 Aligned_cols=237 Identities=17% Similarity=0.263 Sum_probs=206.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
++++|||+|||.++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|++|++.++ +..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~----~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFH----QSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHT----TCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcC----CCeeCCeEEEEEecC
Confidence 679999999999999999999999999 988887 5779999999999999999999998 668999999999753
Q ss_pred ccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHh
Q 013150 96 RQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNAL 171 (448)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l 171 (448)
.. ..|+|+||| ..+++++|+++|++||.|.++.++.+ .++++|||+|.+.++|.+|++.|
T Consensus 94 ~~---------------~~l~v~nlp-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 94 TD---------------ALLCVANLP-PSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp CS---------------CEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CC---------------CEEEEcCCC-CcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 21 357788997 89999999999999999999988753 24578999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEe
Q 013150 172 DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 251 (448)
Q Consensus 172 ~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~ 251 (448)
+|.. +.+++|+|.|+..+.... .....++|+ |.
T Consensus 158 ~~~~---------~~g~~i~v~~a~~~~~~~------------------------------------~~~~~~~l~--v~ 190 (284)
T 3smz_A 158 LGKP---------LGPRTLYVHWTDAGQLTP------------------------------------ALLHSRCLC--VD 190 (284)
T ss_dssp TTCE---------ETTEECEEEECCGGGCCT------------------------------------TTTSCSEEE--EE
T ss_pred CCCE---------eCCcEEEEEECCCCCCCc------------------------------------ccCCccEEE--Ee
Confidence 9988 789999999997643211 012356788 89
Q ss_pred CCCccC-CHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCcc
Q 013150 252 NMQYAV-TLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 326 (448)
Q Consensus 252 nl~~~v-t~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~~ 326 (448)
|||.++ |+++|+++|+.||.|.++++..+. +| +|||+|.+.++|.+|++.|||..+.|+ .|+|+|++.+..
T Consensus 191 nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~~~~~ 266 (284)
T 3smz_A 191 RLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKG-FAVLEYETAEMAEEAQQQADGLSLGGS---HLRVSFCAPGPP 266 (284)
T ss_dssp CCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEE-EEEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCSSSC
T ss_pred cCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCccc-EEEEEeCCHHHHHHHHHHhCCCccCCe---EEEEEEecCCCc
Confidence 999996 999999999999999999997653 34 499999999999999999999999998 999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=6.2e-42 Score=328.49 Aligned_cols=242 Identities=16% Similarity=0.184 Sum_probs=201.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC--CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~--~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...++++|||+|||.++|+++|+++|+.||+|.+|++... .++|||||+|.+.++|++|++ ++ +..+.|+.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~----~~~~~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KT----HKVVGQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TT----TCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hC----CcEeCCcEEE
Confidence 4456899999999999999999999999999999999643 358999999999999999995 66 6799999999
Q ss_pred EeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccC-ceEEEEEecc---CCCceEEEEeCCHHHHHH
Q 013150 91 LQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG-FVHKITTFEK---TAGFQALVQFSDTETASS 166 (448)
Q Consensus 91 v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G-~v~~v~~~~~---~~~~~afVeF~~~e~A~~ 166 (448)
|.++. ...|+|+||| ..++++.|+++|++|| .|.+|.+... ..+++|||+|.+.++|.+
T Consensus 112 v~~~~----------------~~~l~v~nlp-~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 112 VSHLT----------------ECTLWMTNFP-PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp EEECC----------------SCEEEEECCC-TTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHH
T ss_pred EEECC----------------CCEEEEECCC-CCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHH
Confidence 98752 2346777997 8999999999999999 9999988773 356899999999999999
Q ss_pred HHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEE
Q 013150 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 246 (448)
Q Consensus 167 A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (448)
|++.|||.. +.++.|+|.|+.......+. ......+++|
T Consensus 175 A~~~l~g~~---------~~g~~l~v~~a~~~~~~~~~--------------------------------~~~~~~~~~l 213 (292)
T 2ghp_A 175 CVEKLNGLK---------IEGYTLVTKVSNPLEKSKRT--------------------------------DSATLEGREI 213 (292)
T ss_dssp HHHHHTTCE---------ETTEECEEEECCCC-----------------------------------------CCTTTEE
T ss_pred HHHHhCCCE---------eCCcEEEEEECCCCcccccc--------------------------------cccCCCCceE
Confidence 999999998 77999999998754321110 0011246778
Q ss_pred EEEEeCCCcc-CCHHHHHHHHhhcCCeeEEEEEccC------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 247 LASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 247 ~v~v~nl~~~-vt~~~L~~~F~~fG~I~~v~i~~~~------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
| |.||+.+ +|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+|+
T Consensus 214 ~--v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~-afV~F~~~~~A~~A~-~l~g~~~~g~---~i~V~ 286 (292)
T 2ghp_A 214 M--IRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC-AFMVFENKDSAERAL-QMNRSLLGNR---EISVS 286 (292)
T ss_dssp E--EEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE-EEEEESSHHHHHHHG-GGTTEEETTE---EEEEE
T ss_pred E--EECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceE-EEEEeCCHHHHHHHH-HhcCCEECCc---EEEEE
Confidence 8 8899999 9999999999999999999996543 355 999999999999999 9999999998 99999
Q ss_pred EeeCC
Q 013150 320 YSRHT 324 (448)
Q Consensus 320 ~ak~~ 324 (448)
||+.+
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=6.6e-32 Score=246.57 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=140.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
+..|+++|||+|||.++||++|+++|++||+|++|+|.. ++++|||||+|.+.++|++||+.++ +..+.|+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~----~~~~~g~~ 86 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN----FDVIKGKP 86 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh----hhhcCCcc
Confidence 456789999999999999999999999999999999953 5679999999999999999999998 66899999
Q ss_pred EEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc--CCCceEEEEeCCHHHHHH
Q 013150 89 VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASS 166 (448)
Q Consensus 89 i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~--~~~~~afVeF~~~e~A~~ 166 (448)
|.+.++......... ....|+|+||| ..+++++|+++|++||.|.+|.++.+ .++++|||+|.+.++|.+
T Consensus 87 i~~~~~~~~~~~~~~-------~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~ 158 (213)
T 4f02_A 87 VRIMWSQRDPSLRKS-------GVGNIFIKNLD-KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER 158 (213)
T ss_dssp CEEEECCCCTHHHHH-------CTTEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHH
T ss_pred ccccccccccccccc-------ccccceECCcc-cccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHH
Confidence 999987654422211 12247788997 89999999999999999999988763 345789999999999999
Q ss_pred HHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 167 AKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 167 A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
|++.|||.. ++|++|+|.|++.+
T Consensus 159 Ai~~lng~~---------~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 159 AIEKMNGML---------LNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHTTCE---------ETTEECEEEECCCH
T ss_pred HHHHhCCCE---------ECCEEEEEEEcCCC
Confidence 999999998 78999999999864
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-30 Score=226.59 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=139.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
|+|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..+.|+.|.|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN----GKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHT----TCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcC----CCccCCCeeEEEEc
Confidence 6899999999999999999999999999999943 4578999999999999999999998 67899999999998
Q ss_pred cccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHH
Q 013150 95 NRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNA 170 (448)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~ 170 (448)
....... ......|+|+||| ..+++++|+++|++||.|.++.+..+ .++++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~-------~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 77 FQSQQSS-------SDDTFNLFVGDLN-VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp CCCCCCC-------CTTCEEEEEESCC-TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCC-------CCCCceEEECCCC-CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 6654211 2344567788997 89999999999999999999988763 3456899999999999999999
Q ss_pred hCCCCCCCcCCCCCCCCeEEEEEecCC
Q 013150 171 LDGRSIPRYLLPENMGPCTLRITYSAH 197 (448)
Q Consensus 171 l~g~~~~~~~~~~~~~~~~l~v~~s~~ 197 (448)
|||.. ++|++|+|+||++
T Consensus 149 l~g~~---------~~g~~i~v~~a~~ 166 (166)
T 3md3_A 149 MQGQD---------LNGRPLRINWAAK 166 (166)
T ss_dssp HTTCE---------ETTEECEEEESCC
T ss_pred hCCCc---------cCCcEEEEEecCC
Confidence 99998 7899999999863
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=4.3e-30 Score=225.19 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=137.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..+.|+.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~----~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN----GITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT----TCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC----CCEeCCcEEEE
Confidence 68999999999999999999999999999999984 34578999999999999999999998 67899999999
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSA 167 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A 167 (448)
.|+...... .....|+|+||| ..+++++|+++|++||.|.++.+.+.. .+++|||+|.+.++|.+|
T Consensus 78 ~~~~~~~~~---------~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A 147 (168)
T 1b7f_A 78 SYARPGGES---------IKDTNLYVTNLP-RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 147 (168)
T ss_dssp EECCCCSST---------TTTCEEEEESCC-TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EecCCCccc---------CCCCCEEEeCCC-CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 998765321 122346677997 899999999999999999999887643 347899999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEec
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYS 195 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s 195 (448)
++.|||..+. .++++|+|.||
T Consensus 148 ~~~l~g~~~~-------g~~~~l~V~~A 168 (168)
T 1b7f_A 148 ISALNNVIPE-------GGSQPLSVRLA 168 (168)
T ss_dssp HHHHTTCCCT-------TCSSCCEEEEC
T ss_pred HHHhcCCEec-------CCCeEEEEEeC
Confidence 9999999843 34599999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=8.2e-30 Score=222.96 Aligned_cols=157 Identities=17% Similarity=0.258 Sum_probs=135.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
++++|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|++|++.++ +..+.|+.|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~----~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN----GLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC----CCccCCceEEE
Confidence 47899999999999999999999999999999994 45567999999999999999999998 67999999999
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSA 167 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A 167 (448)
.++....... ....|+|+||| ..+++++|+++|++||.|.++.+..+. ++++|||+|.+.++|.+|
T Consensus 77 ~~~~~~~~~~---------~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 77 SYARPSSASI---------RDANLYVSGLP-KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp EECCCCCGGG---------TTCEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EecCCCcccC---------CCCcEEECCCC-CcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 9987654211 12346777997 899999999999999999999887633 357899999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCC--eEEEEEec
Q 013150 168 KNALDGRSIPRYLLPENMGP--CTLRITYS 195 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~--~~l~v~~s 195 (448)
++.|||.. +.| .+|+|+||
T Consensus 147 ~~~l~g~~---------~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQK---------PSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCC---------CTTCSSCCEEEEC
T ss_pred HHHhcCCc---------cCCCccceEEEeC
Confidence 99999998 445 45888886
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=5.8e-30 Score=233.69 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=138.2
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
..|||+||| ..+++++|+++|++||.|.+|.++++ +++++|||+|.+.++|.+|++.||+.. +.++
T Consensus 16 ~tlfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~---------~~g~ 85 (213)
T 4f02_A 16 ASLYVGDLH-PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV---------IKGK 85 (213)
T ss_dssp CEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---------ETTE
T ss_pred cEEEEeCCC-CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh---------cCCc
Confidence 457788997 89999999999999999999998863 345789999999999999999999998 7799
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
.|++.++........ ...++|| |+||+.++|+++|+++|++
T Consensus 86 ~i~~~~~~~~~~~~~-------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F~~ 126 (213)
T 4f02_A 86 PVRIMWSQRDPSLRK-------------------------------------SGVGNIF--IKNLDKSIDNKALYDTFSA 126 (213)
T ss_dssp ECEEEECCCCTHHHH-------------------------------------HCTTEEE--EESCCTTCCHHHHHHHHGG
T ss_pred ccccccccccccccc-------------------------------------cccccce--ECCcccccHHHHHHHHHhh
Confidence 999998875432110 1245677 8999999999999999999
Q ss_pred cCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 269 FGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 269 fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
||.|++++|+.+. +|+ |||+|.+.++|++|++.|||..|.|+ +|+|+||+.+.
T Consensus 127 ~G~i~~~~i~~d~~~~~g~-~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~~a~~~~ 182 (213)
T 4f02_A 127 FGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSRK 182 (213)
T ss_dssp GSCEEEEEEEEETTEEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCCHH
T ss_pred cCCeEEEEeeccCCCCceE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEcCCCc
Confidence 9999999997643 354 99999999999999999999999998 99999998764
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.7e-29 Score=239.22 Aligned_cols=170 Identities=17% Similarity=0.258 Sum_probs=142.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEee-cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 13 TQPPSKVLHLRNLPWECTEEELI----ELGKPFGKVVNTKCN-VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~----~~F~~fG~I~~v~i~-~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
...++++|||+|||.++|+++|+ ++|++||.|.+|++. ++++||||||+|.+.++|++||+.++ +..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ----GFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhc----CCeeCCc
Confidence 45679999999999999999977 899999999999985 57789999999999999999999998 6799999
Q ss_pred EEEEeeccccccccCCc---------------------------------------------------------------
Q 013150 88 TVYLQYSNRQEIVNNKT--------------------------------------------------------------- 104 (448)
Q Consensus 88 ~i~v~~s~~~~~~~~~~--------------------------------------------------------------- 104 (448)
.|.|.|++.+.......
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999986543200000
Q ss_pred ---------------------------------------cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEE
Q 013150 105 ---------------------------------------TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITT 145 (448)
Q Consensus 105 ---------------------------------------~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~ 145 (448)
..........|+|+||| ..+++++|+++|++||.|.+|.+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~F~~~G~i~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP-EETNELMLSMLFNQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCC-CcCCHHHHHHHHHhcCCeEEEEE
Confidence 00001123457788997 89999999999999999999999
Q ss_pred eccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC-CeEEEEEecCC
Q 013150 146 FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG-PCTLRITYSAH 197 (448)
Q Consensus 146 ~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~-~~~l~v~~s~~ 197 (448)
.+++ +++|||+|.+.++|.+|++.|||.. +. ++.|+|+|+++
T Consensus 240 ~~~~-~g~afV~f~~~~~A~~A~~~l~g~~---------~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGR-HDIAFVEFDNEVQAGAARDALQGFK---------ITQNNAMKISFAKK 282 (282)
T ss_pred ecCC-CcEEEEEeCCHHHHHHHHHHcCCcE---------eCCCCEEEEEEecC
Confidence 8755 4699999999999999999999988 66 99999999863
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.5e-30 Score=224.92 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=136.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++. ...+.|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~------~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT------QHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS------CCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc------ccccCCeEccc
Confidence 68999999999999999999999999999999984 466899999999999999999995 34899999999
Q ss_pred eeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHH
Q 013150 92 QYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSA 167 (448)
Q Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A 167 (448)
.++..+.... ....|+|+||| ..+++++|+++|++||.|.++.+..+ .++|+|||+|.+.++|.+|
T Consensus 76 ~~~~~~~~~~---------~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 76 KRAIPRDEQD---------KTGKIFVGGIG-PDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp EECCCHHHHH---------HCEEEEEEEEC-TTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred ccccchhhcc---------CCCeEEECCCC-CCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 8876654221 23357788997 89999999999999999999998763 3567999999999999999
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 168 KNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 168 ~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
++ ++|.. +.|++|+|.|+.++
T Consensus 146 ~~-~~~~~---------~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQ-NKFID---------FKDRKIEIKRAEPR 166 (167)
T ss_dssp HH-CSEEC---------SSSSCEEEEECCCC
T ss_pred Hh-CCCEE---------eCCeEEEEeecCCC
Confidence 98 88887 78999999999764
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=8.2e-30 Score=232.88 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=140.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..+.|+.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----~~~~~g~~l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN----SVMLGGRNIK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS----SCCCC-CCCE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc----CCeeCCeeEE
Confidence 347899999999999999999999999999999994 45689999999999999999999998 5689999999
Q ss_pred EeeccccccccCCc--cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHH
Q 013150 91 LQYSNRQEIVNNKT--TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETA 164 (448)
Q Consensus 91 v~~s~~~~~~~~~~--~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A 164 (448)
|.++.......... ..........|+|+||| ..+++++|+++|++||.|.+|.+..+ +.+++|||+|.+.++|
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVH-QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EECCSCCGGGHHHHHHHHHHHTTSCEEEEECCC-TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EecCCCccccchhhhhhhcccCCCcEEEEeCCC-CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 98876543211000 00011233456777997 88999999999999999999998874 3357899999999999
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 165 ~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.+|++.|||.. ++++.|+|.|+...
T Consensus 181 ~~A~~~l~g~~---------~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 181 QDAVSSMNLFD---------LGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHTTCB---------CSSSBCEEEECSSC
T ss_pred HHHHHHccCCE---------eCCcEEEEEEecCC
Confidence 99999999998 78999999999865
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.1e-29 Score=222.22 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=133.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC------CCcceEEEEecCHHHHHHHHHHhhcCCCCceee---C
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG------ANRNQAFIEFADLNQAIAMISYYASSSEPAQVR---G 86 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~------~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~---g 86 (448)
.+++|||+|||.++|+++|+++|++||.|.+|++... +++|||||+|.+.++|++|++.+++ ..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~----~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN----MKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT----TCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC----cEEccCCc
Confidence 5789999999999999999999999999999999543 5789999999999999999999984 3333 5
Q ss_pred cEEEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC---CCceEEEEeCCHHH
Q 013150 87 KTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT---AGFQALVQFSDTET 163 (448)
Q Consensus 87 ~~i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~---~~~~afVeF~~~e~ 163 (448)
+.+.+.++....... .....|+|+||| ..+++++|+++|++||.|.++.+.++. ++++|||+|.+.++
T Consensus 78 ~~~~~~~~~~~~~~~--------~~~~~l~v~nl~-~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA--------VEDRKLFIGMIS-KKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp SCCEEEECGGGCCSC--------GGGSEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred cceEEcccccccccc--------CCCCeEEEcCCC-CcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHH
Confidence 677787765543211 123357777997 899999999999999999999988743 35689999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecC
Q 013150 164 ASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 164 A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
|.+|++.|||..+.. ..+++|+|.|+.
T Consensus 149 A~~A~~~l~g~~~~~------g~~~~l~V~~ad 175 (175)
T 3nmr_A 149 AQTAIKAMHQAQTME------GCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHTTSCCCT------TCSSCCEEEECC
T ss_pred HHHHHHHhcCCcccC------CCCCCeEEEecC
Confidence 999999999988541 125999999974
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.4e-29 Score=227.71 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=136.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+. + +..+.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~----~~~~~g~~ 83 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-R----PHKVDGRV 83 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-C----SCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-C----CCEECCEE
Confidence 345689999999999999999999999999999999954 55789999999999999999987 4 56899999
Q ss_pred EEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHH
Q 013150 89 VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETA 164 (448)
Q Consensus 89 i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A 164 (448)
|.|.++.......... .......|+|+||| ..+++++|+++|++||.|.+|.+..+ ..+++|||+|.+.++|
T Consensus 84 l~v~~~~~~~~~~~~~---~~~~~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPG---AHLTVKKIFVGGIK-EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CEEEECCC--------------CCSEEEEECCT-TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred eeeecccCcccccccc---cCCCcceEEEeCCC-CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 9999987654322111 11223457777997 89999999999999999999988863 3457899999999999
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCc
Q 013150 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 199 (448)
Q Consensus 165 ~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~ 199 (448)
.+|++. +|.. +.|+.|.|.|+..+.
T Consensus 160 ~~A~~~-~~~~---------~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 160 DKIVIQ-KYHT---------VNGHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHC-SCCE---------ETTEECEEEECC---
T ss_pred HHHHHh-CCcE---------ECCEEEEEEecCChh
Confidence 999986 7776 789999999998654
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=5.7e-29 Score=229.70 Aligned_cols=170 Identities=24% Similarity=0.297 Sum_probs=141.9
Q ss_pred CCCCCccEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 12 YTQPPSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~-~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...+++++|||+|||. ++|+++|+++|++||.|.+|++...+ +|||||+|.+.++|++|++.++ +..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~----g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLN----GHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHT----TCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhC----CCeECCeEEE
Confidence 3456899999999999 99999999999999999999997654 8999999999999999999998 6789999999
Q ss_pred EeeccccccccCCc--------------------------cccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccC-ceEEE
Q 013150 91 LQYSNRQEIVNNKT--------------------------TADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG-FVHKI 143 (448)
Q Consensus 91 v~~s~~~~~~~~~~--------------------------~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G-~v~~v 143 (448)
|.++........+. ..........|+|+||| ..+++++|+++|++|| .|.+|
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp-~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCC-TTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCC-ccCCHHHHHHHHHHcCCCeeEE
Confidence 99987542111000 00001123456777997 8999999999999999 99999
Q ss_pred EEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC-CeEEEEEecCC
Q 013150 144 TTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG-PCTLRITYSAH 197 (448)
Q Consensus 144 ~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~-~~~l~v~~s~~ 197 (448)
.++.+. +++|||+|.+.++|.+|++.|||.. +. +++|+|.|++.
T Consensus 183 ~i~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~---------~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 183 KFFQKD-RKMALIQMGSVEEAVQALIDLHNHD---------LGENHHLRVSFSKS 227 (229)
T ss_dssp EECSSS-TTCEEEEESSHHHHHHHHHHHTTCB---------SSSSCBCEEEECSS
T ss_pred EEEECC-CcEEEEEECCHHHHHHHHHHHCCCc---------cCCCCeEEEEEecC
Confidence 997643 4789999999999999999999998 66 99999999875
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=3.2e-29 Score=226.79 Aligned_cols=168 Identities=14% Similarity=0.172 Sum_probs=135.8
Q ss_pred CCccEEEEcCCC-CCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 15 PPSKVLHLRNLP-WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 15 ~~s~~l~V~nLp-~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
+++++|||+||| .++|+++|+++|++||.|.+|++... ++|||||+|.+.++|++||+.|| +..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~ln----g~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLN----NNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHT----TCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhC----CCEECCceEEEEE
Confidence 578999999999 89999999999999999999998754 58999999999999999999999 6799999999999
Q ss_pred ccccccccCC---------------------cc---------ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCce--E
Q 013150 94 SNRQEIVNNK---------------------TT---------ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFV--H 141 (448)
Q Consensus 94 s~~~~~~~~~---------------------~~---------~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v--~ 141 (448)
++.+...... .. ...+++ .|+|+||| ..+++++|+++|++||.| .
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~--~l~v~NLp-~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN--VLHFFNAP-LEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCS--EEEEEEEC-TTCCHHHHHHHHHHHTCCCCS
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcc--eEEEeCCC-CCCCHHHHHHHHHhcCCcceE
Confidence 8754321000 00 001223 46677997 899999999999999999 8
Q ss_pred EEEEecc--CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEec
Q 013150 142 KITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 195 (448)
Q Consensus 142 ~v~~~~~--~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s 195 (448)
++.++.. .++++|||+|.+.++|.+|+..|||..+.. .....++.|.++
T Consensus 154 ~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g-----~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKN-----PNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECC-----SSSSSCEECEEE
T ss_pred EEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccC-----CCCCcceEEEec
Confidence 9988874 334799999999999999999999998531 133346776664
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2.3e-29 Score=222.22 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=138.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
....++++|||+|||.++|+++|+++|++||.|..+.+ .+++++|||||+|.+.++|++||+ ++ +..+.|+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~----g~~~~g~~ 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT----GLKVFGNE 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG----GEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cC----CCEeCCeE
Confidence 45567899999999999999999999999987654222 467789999999999999999995 77 67999999
Q ss_pred EEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHH
Q 013150 89 VYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 168 (448)
Q Consensus 89 i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~ 168 (448)
|.|.++..+..... .....|+|+||| ..+++++|+++|++||.|..+ ...+.++++|||+|.+.++|.+|+
T Consensus 83 l~v~~~~~~~~~~~-------~~~~~l~v~nlp-~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 83 IKLEKPKGRDSKKV-------RAARTLLAKNLS-FNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp EEEECCCCSSCSTT-------GGGGEEEEESCC-SSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred EEEecCCCcccccc-------ccCCEEEEeCCC-CCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHH
Confidence 99999876543211 223457777997 899999999999999999887 333567789999999999999999
Q ss_pred HHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 169 NALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 169 ~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
+.|||.. +.|+.|+|+|+..+
T Consensus 154 ~~l~g~~---------~~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAE---------IDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEE---------ETTEEEEEEECSSC
T ss_pred HHhCCCE---------ECCeEEEEEecCCC
Confidence 9999988 78999999999754
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.5e-28 Score=220.94 Aligned_cols=187 Identities=15% Similarity=0.174 Sum_probs=137.6
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEE
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 193 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~ 193 (448)
.|+|+||+...++++.|+++|++||.|.+|++++++ +++|||+|.+.++|++|++.|||.. +.|++|+|.
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~---------~~g~~l~v~ 75 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNF---------MFGQKMNVC 75 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCE---------ETTEECEEE
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCE---------ECCceEEEE
Confidence 466779953689999999999999999999998754 5799999999999999999999999 779999999
Q ss_pred ecCCCccccccccc------CCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHh
Q 013150 194 YSAHTDLSVKFQSH------RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS 267 (448)
Q Consensus 194 ~s~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~ 267 (448)
|++.+......... ..+++....... ..... .........++++|| |.|||.++|+++|+++|+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r-------~~~~~-~~~~~~~~~p~~~l~--v~NLp~~~t~~~L~~~F~ 145 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNR-------FSTPE-QAAKNRIQHPSNVLH--FFNAPLEVTEENFFEICD 145 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCS-------CSSHH-HHTTSCCCCCCSEEE--EEEECTTCCHHHHHHHHH
T ss_pred EccCCccCCCcccccccCCccccccCCCcccc-------ccCcc-cccccccCCCcceEE--EeCCCCCCCHHHHHHHHH
Confidence 99865431110000 001111000000 00000 000011224577888 889999999999999999
Q ss_pred hcCCe--eEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCc-eeEEEEEEe
Q 013150 268 AFGPV--QKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS 321 (448)
Q Consensus 268 ~fG~I--~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~-~~~i~v~~a 321 (448)
+||.| .+++++.++ +| +|||+|.+.++|.+||+.|||..|.|.+ ..++.|.|+
T Consensus 146 ~~G~v~~~~v~~~~~~~~~~g-~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 146 ELGVKRPTSVKVFSGKSERSS-SGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHTCCCCSEEEECSCCSSSSE-EEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred hcCCcceEEEEEEcCCCCCce-EEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999 899997653 35 4999999999999999999999998873 346777765
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=8.8e-29 Score=217.74 Aligned_cols=155 Identities=17% Similarity=0.336 Sum_probs=133.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPF----G-------KVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV 84 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~f----G-------~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~ 84 (448)
++++|||+|||.++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .++ +..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~----~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFD----GIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGT----TCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhC----CcEe
Confidence 68999999999999999999999999 6 77777754 66999999999999999999 787 6789
Q ss_pred eCcEEEEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCC
Q 013150 85 RGKTVYLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSD 160 (448)
Q Consensus 85 ~g~~i~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~ 160 (448)
.|+.|.|.++...... .....|+|+||| ..+++++|+++|++||.|.++.+..+. ++++|||+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~---------~~~~~l~v~nlp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL---------PGAHKLFIGGLP-NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp TTEECEEECCSSCCCC---------TTTTCEEEECCC-TTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCceeeecCCcccCCC---------CCCCEEEEEcCC-CcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 9999999987654321 122346677997 899999999999999999999987742 35789999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecC
Q 013150 161 TETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 161 ~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
.++|.+|++.|||.. ++|++|+|+||.
T Consensus 146 ~~~A~~A~~~l~g~~---------~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQ---------LGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCE---------ETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCE---------ECCeEEEEEeCC
Confidence 999999999999998 789999999974
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=2.2e-28 Score=213.79 Aligned_cols=155 Identities=15% Similarity=0.261 Sum_probs=134.1
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeE
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~ 189 (448)
.|+|+||| ..+++++|+++|++||.|.++.+.+++ ++++|||+|.+.++|.+|++.|||.. +.+++
T Consensus 4 ~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~---------~~g~~ 73 (167)
T 1fxl_A 4 NLIVNYLP-QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR---------LQTKT 73 (167)
T ss_dssp EEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE---------ETTEE
T ss_pred eEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc---------cCCce
Confidence 46777997 899999999999999999999988743 34789999999999999999999988 77999
Q ss_pred EEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhc
Q 013150 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269 (448)
Q Consensus 190 l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~f 269 (448)
|+|.++...... ...++|+ |.||+..+|+++|+++|++|
T Consensus 74 l~v~~~~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f~~~ 112 (167)
T 1fxl_A 74 IKVSYARPSSAS---------------------------------------IRDANLY--VSGLPKTMTQKELEQLFSQY 112 (167)
T ss_dssp CEEEECCCCCGG---------------------------------------GTTCEEE--EESCCTTCCHHHHHHHHGGG
T ss_pred EEEEecCCCccc---------------------------------------CCCCcEE--ECCCCCcCCHHHHHHHHHhc
Confidence 999998754311 1256677 89999999999999999999
Q ss_pred CCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 270 GPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 270 G~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
|.|.++++..++ +|+ |||+|.+.++|.+|++.|||..+.|+ .++|+|+||
T Consensus 113 G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 113 GRIITSRILVDQVTGVSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp SCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred CCEeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 999999997653 354 99999999999999999999999997 446999986
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=5.8e-28 Score=222.91 Aligned_cols=188 Identities=26% Similarity=0.361 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCC-CCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEE
Q 013150 112 VLLVTIEGTDAR-LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190 (448)
Q Consensus 112 ~~~v~V~nlp~~-~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l 190 (448)
...|+|+||| . .+++++|+++|++||.|.+|.+.+++ +++|||+|.+.++|.+|++.|||.. +.++.|
T Consensus 34 ~~~l~V~nLp-~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~---------~~g~~l 102 (229)
T 2adc_A 34 NSVLLVSNLN-PERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHK---------LHGKPI 102 (229)
T ss_dssp CSEEEEESCC-TTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCB---------CSSSBC
T ss_pred CCEEEEeCCC-cccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCe---------ECCeEE
Confidence 3456677997 7 89999999999999999999998865 5789999999999999999999998 779999
Q ss_pred EEEecCCCcccccccc----cCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 191 RITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 191 ~v~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
+|.++........... ...+++........ .... .........++++|| |.||+.++|+++|+++|
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~--V~nlp~~~t~~~l~~~f 172 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF-------KKPG-SKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLF 172 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCC-------CSTT-SGGGTTCCCSCSEEE--EECCCTTCCHHHHHHHH
T ss_pred EEEEecCccccCccccccccccccccccCccccc-------CCcc-ccccccCCCCCCEEE--EeCCCccCCHHHHHHHH
Confidence 9999985532211110 00111111000000 0000 000011224567888 88999999999999999
Q ss_pred hhcC-CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC-CCceeEEEEEEeeCC
Q 013150 267 SAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 324 (448)
Q Consensus 267 ~~fG-~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~-g~~~~~i~v~~ak~~ 324 (448)
++|| .|.+|+++.+++|+ |||+|.+.++|.+|++.|||..+. |+ .|+|+|++.+
T Consensus 173 ~~~G~~i~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~~ 228 (229)
T 2adc_A 173 SSNGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 228 (229)
T ss_dssp HTTSCCEEEEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSSC
T ss_pred HHcCCCeeEEEEEECCCcE-EEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecCC
Confidence 9999 99999997766676 999999999999999999999999 77 9999999763
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=9.2e-29 Score=223.01 Aligned_cols=166 Identities=25% Similarity=0.307 Sum_probs=139.4
Q ss_pred CccEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 16 PSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 16 ~s~~l~V~nLp~-~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
.+++|||+|||. ++|+++|+++|++||.|.+|++...+ +|||||+|.+.++|++|++.++ +..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~----~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLN----GHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHT----TCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhC----CCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999997654 8999999999999999999998 66889999999998
Q ss_pred cccccccCCcc--------------------------ccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccC-ceEEEEEec
Q 013150 95 NRQEIVNNKTT--------------------------ADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFG-FVHKITTFE 147 (448)
Q Consensus 95 ~~~~~~~~~~~--------------------------~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G-~v~~v~~~~ 147 (448)
........+.. .........|+|+||| ..+++++|+++|++|| .|.+|.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP-PSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCC-TTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCC-CCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 75421110000 0001124557788997 8999999999999999 999999876
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC-CeEEEEEecCC
Q 013150 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG-PCTLRITYSAH 197 (448)
Q Consensus 148 ~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~-~~~l~v~~s~~ 197 (448)
+. +++|||+|.+.++|.+|++.|||.. ++ +++|+|.|++.
T Consensus 156 ~~-~g~afV~f~~~~~A~~A~~~l~g~~---------~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 156 KD-RKMALIQMGSVEEAVQALIDLHNHD---------LGENHHLRVSFSKS 196 (198)
T ss_dssp TT-SSCEEEECSSHHHHHHHHHHHTSSC---------CSSCCSCCEEEECC
T ss_pred CC-CcEEEEEeCCHHHHHHHHHHhcCCc---------cCCCCeEEEEeecc
Confidence 43 5799999999999999999999998 66 99999999875
No 21
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-28 Score=213.32 Aligned_cols=157 Identities=16% Similarity=0.279 Sum_probs=135.9
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC---CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEE
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~---~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l 190 (448)
.|+|+||| ..+++++|+++|++||.|.+|.+..++ ++++|||+|.+.++|.+|++.|||.. +.++.|
T Consensus 2 ~l~V~nlp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~---------~~g~~i 71 (166)
T 3md3_A 2 VLYVGNLD-KAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ---------IENNIV 71 (166)
T ss_dssp EEEEEEEE-TTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE---------ETTEEC
T ss_pred EEEECCCC-CcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc---------cCCCee
Confidence 47788997 899999999999999999999987633 45789999999999999999999998 779999
Q ss_pred EEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcC
Q 013150 191 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG 270 (448)
Q Consensus 191 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG 270 (448)
+|.++...... ....+++|+ |.||+.++|+++|+++|++||
T Consensus 72 ~v~~~~~~~~~-------------------------------------~~~~~~~l~--v~nl~~~~t~~~l~~~f~~~G 112 (166)
T 3md3_A 72 KINWAFQSQQS-------------------------------------SSDDTFNLF--VGDLNVNVDDETLRNAFKDFP 112 (166)
T ss_dssp EEEECCCCCCC-------------------------------------CCTTCEEEE--EESCCTTCCHHHHHHHHTTST
T ss_pred EEEEcCCCCCC-------------------------------------CCCCCceEE--ECCCCCCCCHHHHHHHHhccC
Confidence 99998754310 112356777 899999999999999999999
Q ss_pred CeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeC
Q 013150 271 PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 323 (448)
Q Consensus 271 ~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~ 323 (448)
.|.++++..+. +| +|||+|.+.++|.+|++.|||..+.|+ .|+|+||+.
T Consensus 113 ~i~~~~i~~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~ 166 (166)
T 3md3_A 113 SYLSGHVMWDMQTGSSRG-YGFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAAK 166 (166)
T ss_dssp TEEEEEEEECTTTCCEEE-EEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESCC
T ss_pred CeeEEEEEecCCCCCcce-EEEEEeCCHHHHHHHHHHhCCCccCCc---EEEEEecCC
Confidence 99999997542 34 499999999999999999999999998 999999863
No 22
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.3e-27 Score=227.67 Aligned_cols=196 Identities=19% Similarity=0.306 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCCCcHHHHH----HHhcccCceEEEEEec-cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLH----LVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~----~~f~~~G~v~~v~~~~-~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
...|||+||| ..+++++|+ ++|++||.|.+|.+.+ ++.+++|||+|.+.++|.+|++.|||.. +.
T Consensus 9 ~~~l~V~nlp-~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~---------~~ 78 (282)
T 3pgw_A 9 NHTIYINNLN-EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP---------FY 78 (282)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCe---------eC
Confidence 3456777997 899999966 8999999999998876 5567899999999999999999999988 77
Q ss_pred CeEEEEEecCCCccccc-ccccC-CcC----------CC----CCCCC---------CCCCc------------------
Q 013150 187 PCTLRITYSAHTDLSVK-FQSHR-SRD----------YT----NPYLP---------VAPSA------------------ 223 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~-~~~~~-~~~----------~~----~~~~~---------~~~~~------------------ 223 (448)
++.|+|.|++.+..... ..... .+. .. ..... .....
T Consensus 79 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 79 DKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred CcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 99999999975432110 00000 000 00 00000 00000
Q ss_pred -----------cCccCCccc-----------------c-CCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE
Q 013150 224 -----------IDASGQLSV-----------------G-LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 274 (448)
Q Consensus 224 -----------~~~~~~~~~-----------------~-~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~ 274 (448)
....+.... . ........++++|| |.||+.++|+++|+++|++||.|.+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF--LTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE--EeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 000000000 0 00011233567788 8999999999999999999999999
Q ss_pred EEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC-CCceeEEEEEEeeC
Q 013150 275 IAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH 323 (448)
Q Consensus 275 v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~-g~~~~~i~v~~ak~ 323 (448)
|+++.+++|+ |||+|.+.++|.+|++.|||..|. |+ .|+|+|||.
T Consensus 237 v~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk 282 (282)
T 3pgw_A 237 VRLVPGRHDI-AFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK 282 (282)
T ss_pred EEEecCCCcE-EEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence 9999877676 999999999999999999999999 87 999999973
No 23
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3.1e-28 Score=213.31 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=134.1
Q ss_pred EEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeE
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~ 189 (448)
.|+|+||| ..+++++|+++|++||.|.+|.+.+++ ++++|||+|.+.++|.+|++.|+|.. +.+++
T Consensus 5 ~l~v~nlp-~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~---------~~g~~ 74 (168)
T 1b7f_A 5 NLIVNYLP-QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT---------VRNKR 74 (168)
T ss_dssp EEEEECCC-TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE---------ETTEE
T ss_pred EEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE---------eCCcE
Confidence 46677997 899999999999999999999987632 45789999999999999999999998 78999
Q ss_pred EEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhc
Q 013150 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269 (448)
Q Consensus 190 l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~f 269 (448)
|+|.|+...... ..+++|+ |.||+..+|+++|+++|++|
T Consensus 75 l~v~~~~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f~~~ 113 (168)
T 1b7f_A 75 LKVSYARPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIFGKY 113 (168)
T ss_dssp CEEEECCCCSST---------------------------------------TTTCEEE--EESCCTTCCHHHHHHHHTSS
T ss_pred EEEEecCCCccc---------------------------------------CCCCCEE--EeCCCCCCCHHHHHHhhhcC
Confidence 999998754310 1356777 89999999999999999999
Q ss_pred CCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 270 GPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 270 G~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
|.|.++++..++ +|+ |||+|.+.++|.+|++.|||..+.|+ .++|+|+||
T Consensus 114 G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 114 GSIVQKNILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp SCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred CcEEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence 999999997654 244 99999999999999999999999883 349999986
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=2.3e-28 Score=220.08 Aligned_cols=167 Identities=16% Similarity=0.300 Sum_probs=137.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPF----G-------KVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~f----G-------~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
..+++|||+|||.++||++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|| .++ +..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~~g~afV~F~~~~~A~~Al-~l~----g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQDKNFAFLEFRSVDETTQAM-AFD----GII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETTTTEEEEEESCSHHHHHHG-GGT----TEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCCCCEEEEEeCCHHHHHHHH-Hhc----CCE
Confidence 368999999999999999999999999 5 6666664 477999999999999999999 787 678
Q ss_pred eeCcEEEEeeccccccccCC-----------ccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC---
Q 013150 84 VRGKTVYLQYSNRQEIVNNK-----------TTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT--- 149 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~~~~~~-----------~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~--- 149 (448)
+.|+.|.|.++......... ...........|+|+||| ..+++++|+++|++||.|.+|.+..+.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~ 153 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLP-NYLNDDQVKELLTSFGPLKAFNLVKDSATG 153 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCC-TTCCHHHHHHHHHTBSCEEEEEEEECTTTC
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCC-CCCCHHHHHHHHHHcCCccEEEEeecCCCC
Confidence 99999999988664321110 011112345667788997 899999999999999999999988642
Q ss_pred -CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 150 -AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 150 -~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
++++|||+|.+.++|.+|++.|||.. ++|+.|+|.|++.+
T Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~---------~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 154 LSKGYAFCEYVDINVTDQAIAGLNGMQ---------LGDKKLLVQRASVG 194 (198)
T ss_dssp SEEEEEEEEESSSSHHHHHHHHHTTCE---------ETTEECEEEESCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCE---------ECCEEEEEEECCCC
Confidence 35789999999999999999999998 78999999999864
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=7.5e-28 Score=217.00 Aligned_cols=186 Identities=26% Similarity=0.372 Sum_probs=142.6
Q ss_pred EEEEcCCCCC-CCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEE
Q 013150 114 LVTIEGTDAR-LVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 192 (448)
Q Consensus 114 ~v~V~nlp~~-~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v 192 (448)
.|+|+||| . .+++++|+++|++||.|.+|.+..++ +++|||+|.+.++|.+|++.|||.. +.++.|+|
T Consensus 5 ~l~v~nlp-~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~---------~~g~~l~v 73 (198)
T 1qm9_A 5 VLLVSNLN-PERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHK---------LHGKPIRI 73 (198)
T ss_dssp EEEEECCC-SSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCC---------CSSCCCEE
T ss_pred EEEEeCCC-cccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCe---------ecCeEEEE
Confidence 46777997 7 89999999999999999999998865 5789999999999999999999998 77999999
Q ss_pred EecCCCccccccccc----CCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 193 TYSAHTDLSVKFQSH----RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 193 ~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
.++............ ..+++...... ..... ..........++++|+ |.||+..+|+++|+++|++
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~-~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~ 143 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLH-------RFKKP-GSKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLFSS 143 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTT-------SSSSC-CCCCCSCCCCCCCEEE--ECCCCTTCCHHHHHHHHHH
T ss_pred EEecCCCcCCCCcCCccccccccccCCchh-------hccCc-cccccccCCCCccEEE--EeCCCCCCCHHHHHHHHHH
Confidence 999855322111100 00111100000 00000 0000111224577888 8999999999999999999
Q ss_pred cC-CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC-CCceeEEEEEEeeCC
Q 013150 269 FG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 324 (448)
Q Consensus 269 fG-~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~-g~~~~~i~v~~ak~~ 324 (448)
|| .|.+++++.+++|+ |||+|.+.++|.+|++.|||..+. |+ .|+|+|++.+
T Consensus 144 ~G~~v~~v~i~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~ 197 (198)
T 1qm9_A 144 NGGVVKGFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 197 (198)
T ss_dssp TTSCCCEEEESSTTSSC-EEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred cCCCceEEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence 99 99999997766786 999999999999999999999998 77 9999999763
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=4.2e-28 Score=221.49 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=137.6
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
..|+|+||| ..+++++|+++|++||.|.+|.++.+ +.+++|||+|.+.++|.+|++.|||.. +.++
T Consensus 29 ~~l~V~nLp-~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~---------~~g~ 98 (216)
T 2qfj_A 29 SRVYVGSIY-YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM---------LGGR 98 (216)
T ss_dssp TEEEEECCC-TTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC---------CC-C
T ss_pred CEEEEECCC-CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe---------eCCe
Confidence 356777997 89999999999999999999999763 367899999999999999999999988 7799
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
.|+|.++.............. ......++|| |.||+.++|+++|+++|++
T Consensus 99 ~l~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~l~--v~nlp~~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 99 NIKVGRPSNIGQAQPIIDQLA----------------------------EEARAFNRIY--VASVHQDLSDDDIKSVFEA 148 (216)
T ss_dssp CCEEECCSCCGGGHHHHHHHH----------------------------HHHTTSCEEE--EECCCTTCCHHHHHHHHTT
T ss_pred eEEEecCCCccccchhhhhhh----------------------------cccCCCcEEE--EeCCCCcCCHHHHHHHHhc
Confidence 999988765431110000000 0012356788 8999999999999999999
Q ss_pred cCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 269 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 269 fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
||.|+++++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++...
T Consensus 149 ~G~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~---~i~V~~a~~~~ 206 (216)
T 2qfj_A 149 FGKIKSATLARDPTTGKHKGY-GFIEYEKAQSSQDAVSSMNLFDLGGQ---YLRVGKAVTPP 206 (216)
T ss_dssp SSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBCSSS---BCEEEECSSCS
T ss_pred cCCeeEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHHccCCEeCCc---EEEEEEecCCC
Confidence 9999999997653 354 99999999999999999999999999 99999987653
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.2e-27 Score=211.00 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=134.5
Q ss_pred eEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc------CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCC
Q 013150 112 VLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENM 185 (448)
Q Consensus 112 ~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~------~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~ 185 (448)
...|+|+||| ..+++++|+++|++||.|.+|.++++ +++++|||+|.+.++|.+|++.|||..+.. .
T Consensus 3 ~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~------~ 75 (175)
T 3nmr_A 3 AIKMFVGQVP-RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP------G 75 (175)
T ss_dssp CEEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT------T
T ss_pred ceEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc------C
Confidence 4568888997 89999999999999999999998874 345789999999999999999999987542 3
Q ss_pred CCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHH
Q 013150 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 265 (448)
Q Consensus 186 ~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~ 265 (448)
.++.+.+.++...... ...+++|| |.||+.++|+++|+++
T Consensus 76 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~ 115 (175)
T 3nmr_A 76 MHHPIQMKPADSEKNN--------------------------------------AVEDRKLF--IGMISKKCTENDIRVM 115 (175)
T ss_dssp CSSCCEEEECGGGCCS--------------------------------------CGGGSEEE--EESCCTTCCHHHHHHH
T ss_pred CccceEEccccccccc--------------------------------------cCCCCeEE--EcCCCCcCCHHHHHHH
Confidence 3677788776643210 01256677 8999999999999999
Q ss_pred HhhcCCeeEEEEEccCCC---eEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 266 FSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 266 F~~fG~I~~v~i~~~~~g---~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
|++||.|.++++..++.| .+|||+|.+.++|.+|++.|||..+.+++.++|+|+||.
T Consensus 116 F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 116 FSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999765422 249999999999999999999998876323499999973
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.8e-27 Score=225.53 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=142.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+++++|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|.+|++.++ +..++|+.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----~~~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL----GKPLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC----CCEeCCcEE
Confidence 3467899999999999999999999999999999885 45678999999999999999999998 678999999
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCC-CcHHHHHHHhcccCceEEEEEecc---CCCceEEEEeCCHHHHH
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVFSAFGFVHKITTFEK---TAGFQALVQFSDTETAS 165 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~-~~~e~l~~~f~~~G~v~~v~~~~~---~~~~~afVeF~~~e~A~ 165 (448)
.|.|+........ . .....|+|+||| .. +++++|+++|+.||.|.++.+..+ +++++|||+|.+.++|.
T Consensus 168 ~v~~a~~~~~~~~----~--~~~~~l~v~nlp-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 168 YVHWTDAGQLTPA----L--LHSRCLCVDRLP-PGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAE 240 (284)
T ss_dssp EEEECCGGGCCTT----T--TSCSEEEEECCC-TTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHH
T ss_pred EEEECCCCCCCcc----c--CCccEEEEecCC-cccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHH
Confidence 9999987653321 1 223446677997 67 499999999999999999988773 33578999999999999
Q ss_pred HHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCc
Q 013150 166 SAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 199 (448)
Q Consensus 166 ~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~ 199 (448)
+|++.|||.. ++|++|+|.|+..+.
T Consensus 241 ~A~~~l~g~~---------~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 241 EAQQQADGLS---------LGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHTTCE---------ETTEECEEEECCSSS
T ss_pred HHHHHhCCCc---------cCCeEEEEEEecCCC
Confidence 9999999998 789999999998654
No 29
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=5.6e-27 Score=220.65 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=135.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..++++|||+|||.++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|++.++ +..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~--~~kg~afV~f~~~~~A~~A~~~l~----g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN--RDRGFGFIRLESRTLAEIAKAELD----GTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHT----TCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCcEEEEEECCHHHHHHHHHHcC----CcEECCceeEeee
Confidence 3457899999999999999999999999999999986 569999999999999999999998 6789999999998
Q ss_pred ccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc---CCCceEEEEeCCHHHHHHHHHH
Q 013150 94 SNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNA 170 (448)
Q Consensus 94 s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~---~~~~~afVeF~~~e~A~~A~~~ 170 (448)
+... . .|+|+||| ..+++++|+++|++||.|.+|.++.+ +++++|||+|.+.++|.+|++.
T Consensus 93 a~~~-------------~--~l~v~nl~-~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 93 ATHG-------------A--ALTVKNLS-PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CCCS-------------S--EEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccC-------------C--cccccCCC-CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 8642 2 47778997 89999999999999999999988763 3457899999999999999999
Q ss_pred hCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 171 LDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 171 l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
||+..+. ....+++|.|.++...
T Consensus 157 l~~~~~~-----~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 157 CGDGAFL-----LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHSCEE-----SSSSCCBCEEEECCCE
T ss_pred hcCCeEE-----ecCCCceEEEeecccc
Confidence 9654421 0144899999998754
No 30
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=7.5e-27 Score=209.87 Aligned_cols=164 Identities=12% Similarity=0.157 Sum_probs=131.9
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC----CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~----~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
....|||+||| ..+++++|+++|++||.|.+|.++.+. ++++|||+|.+.++|.+|++. ++.. +.
T Consensus 12 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~---------~~ 80 (196)
T 1l3k_A 12 QLRKLFIGGLS-FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK---------VD 80 (196)
T ss_dssp GGGEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE---------ET
T ss_pred CCCEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE---------EC
Confidence 34567788997 899999999999999999999988732 357899999999999999985 7776 78
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
++.|.|.++......... ......++|| |.||+.++|+++|+++|
T Consensus 81 g~~l~v~~~~~~~~~~~~---------------------------------~~~~~~~~l~--V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRP---------------------------------GAHLTVKKIF--VGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp TEECEEEECCC--------------------------------------------CCSEEE--EECCTTTCCHHHHHHHH
T ss_pred CEEeeeecccCccccccc---------------------------------ccCCCcceEE--EeCCCCCCCHHHHHHHH
Confidence 999999998754311100 0112356788 89999999999999999
Q ss_pred hhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 267 SAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 267 ~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
+.||.|.++++..+. +|+ |||+|.+.++|.+|++. +|..|.|+ .|+|+|+..+.
T Consensus 126 ~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~-~~~~~~G~---~i~v~~a~~k~ 184 (196)
T 1l3k_A 126 EQYGKIEVIEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVIQ-KYHTVNGH---NCEVRKALSKQ 184 (196)
T ss_dssp TTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHC-SCCEETTE---ECEEEECC---
T ss_pred hcCCCeEEEEEeecCCCCCccce-EEEEECCHHHHHHHHHh-CCcEECCE---EEEEEecCChh
Confidence 999999999997653 355 99999999999999986 89999998 99999997765
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=1.1e-26 Score=204.29 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=130.2
Q ss_pred EEEEcCCCCCCCcHHHHHHHhccc----C-------ceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCC
Q 013150 114 LVTIEGTDARLVSIDVLHLVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLP 182 (448)
Q Consensus 114 ~v~V~nlp~~~~~~e~l~~~f~~~----G-------~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~ 182 (448)
.|+|+||| ..+++++|+++|++| | .|.++.+.+. +++|||+|.+.++|.+|+ .|||..
T Consensus 6 ~l~V~nLp-~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~--~g~afV~f~~~~~A~~A~-~~~~~~------- 74 (172)
T 2g4b_A 6 RLYVGNIP-FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGII------- 74 (172)
T ss_dssp EEEEESCC-TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT--TTEEEEEESSHHHHHHHG-GGTTCE-------
T ss_pred EEEEcCCC-cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC--CCEEEEEeCCHHHHHHHH-HhCCcE-------
Confidence 56777997 899999999999999 7 7888877654 589999999999999999 899988
Q ss_pred CCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHH
Q 013150 183 ENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVL 262 (448)
Q Consensus 183 ~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L 262 (448)
+.+++|+|.++...... ...++|+ |.|||.++|+++|
T Consensus 75 --~~g~~i~v~~~~~~~~~---------------------------------------~~~~~l~--v~nlp~~~t~~~l 111 (172)
T 2g4b_A 75 --FQGQSLKIRRPHDYQPL---------------------------------------PGAHKLF--IGGLPNYLNDDQV 111 (172)
T ss_dssp --ETTEECEEECCSSCCCC---------------------------------------TTTTCEE--EECCCTTCCHHHH
T ss_pred --ecCceeeecCCcccCCC---------------------------------------CCCCEEE--EEcCCCcCCHHHH
Confidence 77999999987643210 1256677 8999999999999
Q ss_pred HHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 263 HMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 263 ~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+++|++||.|.++++..++ +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+||
T Consensus 112 ~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~A 171 (172)
T 2g4b_A 112 KELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRA 171 (172)
T ss_dssp HHHHHTTSCEEEEEEEECTTTCSEEEE-EEEEESSTTHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred HHHHHhcCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCEECCe---EEEEEeC
Confidence 9999999999999997653 355 99999999999999999999999998 9999997
No 32
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=8.1e-27 Score=223.23 Aligned_cols=167 Identities=16% Similarity=0.228 Sum_probs=137.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFG-KVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG-~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
..+++|||+|||.++|+++|+++|+.|| .|.+|++.. ++++|||||+|.+.++|.+|++.++ +..+.|+.|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLN----GLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHT----TCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC----CCEeCCcEEE
Confidence 3689999999999999999999999999 999999854 4579999999999999999999998 6789999999
Q ss_pred EeeccccccccCCccccCCCCeEEEEEcCCCCCC-CcHHHHHHHhcccCceEEEEEecc-----CCCceEEEEeCCHHHH
Q 013150 91 LQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARL-VSIDVLHLVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETA 164 (448)
Q Consensus 91 v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~-~~~e~l~~~f~~~G~v~~v~~~~~-----~~~~~afVeF~~~e~A 164 (448)
|.++.............. ....|+|+||| .. +++++|+++|++||.|.+|.++.+ ..+++|||+|.+.++|
T Consensus 191 v~~a~~~~~~~~~~~~~~--~~~~l~v~nlp-~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATL--EGREIMIRNLS-TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp EEECCCC---------CC--TTTEEEEEEEC-TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred EEECCCCcccccccccCC--CCceEEEECCC-cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 999876553322111122 23346677997 78 999999999999999999999873 3468899999999999
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 165 SSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 165 ~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
.+|+ .|||.. ++|+.|+|.|+..+
T Consensus 268 ~~A~-~l~g~~---------~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 268 ERAL-QMNRSL---------LGNREISVSLADKK 291 (292)
T ss_dssp HHHG-GGTTEE---------ETTEEEEEEECCCC
T ss_pred HHHH-HhcCCE---------ECCcEEEEEEecCC
Confidence 9999 999998 78999999999864
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=3.2e-26 Score=206.04 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=136.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhccc----C-------ceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCC
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLL 181 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~----G-------~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~ 181 (448)
..|+|+||| ..+++++|+++|++| | .|.++.+.+ ++++|||+|.+.++|.+|+ .|||..
T Consensus 5 ~~l~V~nLp-~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~------ 74 (198)
T 2yh0_A 5 RRLYVGNIP-FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGII------ 74 (198)
T ss_dssp CEEEEESCC-TTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEE------
T ss_pred eEEEEcCCC-CCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCE------
Confidence 356777997 899999999999999 5 677776654 4589999999999999999 799988
Q ss_pred CCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHH
Q 013150 182 PENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDV 261 (448)
Q Consensus 182 ~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~ 261 (448)
+.++.|+|.++............. ....+ +..........++|| |.||+..+|+++
T Consensus 75 ---~~g~~i~v~~~~~~~~~~~~~~~~--~~~~~-----------------~~~~~~~~~~~~~l~--v~nl~~~~~~~~ 130 (198)
T 2yh0_A 75 ---FQGQSLKIRRPHDYQPLPGMSENP--SVYVP-----------------GVVSTVVPDSAHKLF--IGGLPNYLNDDQ 130 (198)
T ss_dssp ---ETTEEEEEECCCCCCCCCCSSSCS--SCCCT-----------------TSSCCCSSCCCCEEE--EECCCTTCCHHH
T ss_pred ---EcCceEEEeCCCCCCCCCCCcCCC--cCCCC-----------------CCccCCCCCCCCEEE--EeCCCCCCCHHH
Confidence 789999999987543211100000 00000 000111123467788 899999999999
Q ss_pred HHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 262 LHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 262 L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
|+++|++||.|.++++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+.
T Consensus 131 l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 195 (198)
T 2yh0_A 131 VKELLTSFGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRASVGA 195 (198)
T ss_dssp HHHHHHTBSCEEEEEEEECTTTCSEEEE-EEEEESSSSHHHHHHHHHTTCEETTE---ECEEEESCCCC
T ss_pred HHHHHHHcCCccEEEEeecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCCC
Confidence 99999999999999997653 355 99999999999999999999999998 99999998754
No 34
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=6.6e-27 Score=204.68 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=131.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
..|+|+||| ..+++++|+++|++||.|.+|.++++ .++++|||+|.+.++|.+|++. +.. +.|+
T Consensus 4 ~~l~v~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~---------~~g~ 71 (167)
T 2cjk_A 4 CKMFIGGLN-WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHI---------LDGK 71 (167)
T ss_dssp GEEEECSCC-TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCE---------ETTE
T ss_pred cEEEEeCCC-CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccc---------cCCe
Confidence 357788997 89999999999999999999998763 4568999999999999999994 344 7788
Q ss_pred EEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhh
Q 013150 189 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 268 (448)
Q Consensus 189 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~ 268 (448)
.|.|.++...... ..+++|| |+||+.++|+++|+++|++
T Consensus 72 ~i~v~~~~~~~~~---------------------------------------~~~~~l~--V~nlp~~~t~~~l~~~F~~ 110 (167)
T 2cjk_A 72 VIDPKRAIPRDEQ---------------------------------------DKTGKIF--VGGIGPDVRPKEFEEFFSQ 110 (167)
T ss_dssp ECCCEECCCHHHH---------------------------------------HHCEEEE--EEEECTTCCHHHHHHHHHT
T ss_pred Ecccccccchhhc---------------------------------------cCCCeEE--ECCCCCCCCHHHHHHHHHh
Confidence 8988887643211 1245677 8999999999999999999
Q ss_pred cCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 269 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 269 fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
||.|.++++..++ +|+ |||+|.+.++|.+|++ |||..+.|+ .|+|+||+++
T Consensus 111 ~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i~V~~a~pk 166 (167)
T 2cjk_A 111 WGTIIDAQLMLDKDTGQSRGF-GFVTYDSADAVDRVCQ-NKFIDFKDR---KIEIKRAEPR 166 (167)
T ss_dssp TSCCSEEECCCSSSSSTTSEE-EEEEESSHHHHHHHHH-CSEECSSSS---CEEEEECCCC
T ss_pred CccEEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHh-CCCEEeCCe---EEEEeecCCC
Confidence 9999999996543 355 9999999999999998 999999999 9999999765
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=2.4e-27 Score=209.31 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEe---ccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTF---EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 186 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~---~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~ 186 (448)
.....|+|+||| ..+++++|+++|+.||.|..+.+. .+.++++|||+|.+.++|.+|++ |||.. +.
T Consensus 11 ~~~~~l~V~nLp-~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~---------~~ 79 (175)
T 1fje_B 11 TTPFNLFIGNLN-PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK---------VF 79 (175)
T ss_dssp SSSEEEEEECCC-TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEE---------ET
T ss_pred CCCcEEEEeCCC-CCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCE---------eC
Confidence 445678888997 899999999999999977553222 24567899999999999999995 99998 77
Q ss_pred CeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHH
Q 013150 187 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 266 (448)
Q Consensus 187 ~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 266 (448)
+++|+|.++..+... ....+++|| |.||+.++|+++|+++|
T Consensus 80 g~~l~v~~~~~~~~~-------------------------------------~~~~~~~l~--v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 80 GNEIKLEKPKGRDSK-------------------------------------KVRAARTLL--AKNLSFNITEDELKEVF 120 (175)
T ss_dssp TEEEEEECCCCSSCS-------------------------------------TTGGGGEEE--EESCCSSCCHHHHHHHC
T ss_pred CeEEEEecCCCcccc-------------------------------------ccccCCEEE--EeCCCCCCCHHHHHHHH
Confidence 999999998754211 011356788 89999999999999999
Q ss_pred hhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 267 SAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 267 ~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
++||.|..+......+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||+++
T Consensus 121 ~~~g~v~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~k 174 (175)
T 1fje_B 121 EDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTGEK 174 (175)
T ss_dssp TTCSEEEEECSSSSCCSE-EEEECSSHHHHHHHHHHHTEEEETTE---EEEEEECSSC
T ss_pred HhcCeEEEecCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEecCCC
Confidence 999998877112233565 99999999999999999999999998 9999999765
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2.7e-25 Score=209.11 Aligned_cols=152 Identities=18% Similarity=0.280 Sum_probs=132.2
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeE
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 189 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~ 189 (448)
.....|+|+||| ..+++++|+++|++||.|.+|.+.+. +++|||+|.+.++|.+|++.|||.. +.++.
T Consensus 20 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~---------i~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLP-TDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTI---------LKSRP 87 (261)
T ss_dssp CGGGEEEEESCC-TTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCE---------ETTEE
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcE---------ECCce
Confidence 344567888997 89999999999999999999998764 4899999999999999999999998 77999
Q ss_pred EEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhc
Q 013150 190 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 269 (448)
Q Consensus 190 l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~f 269 (448)
|+|.++.. +++|| |.||+..+|+++|+++|+.|
T Consensus 88 l~v~~a~~---------------------------------------------~~~l~--v~nl~~~~t~~~l~~~F~~~ 120 (261)
T 3sde_A 88 LRIRFATH---------------------------------------------GAALT--VKNLSPVVSNELLEQAFSQF 120 (261)
T ss_dssp CEEEECCC---------------------------------------------SSEEE--EESCCTTCCHHHHHHHHGGG
T ss_pred eEeeeccc---------------------------------------------CCccc--ccCCCCCCCHHHHHHHHHhc
Confidence 99999753 34577 89999999999999999999
Q ss_pred CCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhc-CCccC---CCceeEEEEEEeeCC
Q 013150 270 GPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALE-GHCIY---DGGFCKLHISYSRHT 324 (448)
Q Consensus 270 G~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~ln-g~~l~---g~~~~~i~v~~ak~~ 324 (448)
|.|.+|+++.+. +|+ |||+|.+.++|.+|++.|| |..+. ++ +|+|++++..
T Consensus 121 G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~r---~i~v~~~~~~ 179 (261)
T 3sde_A 121 GPVEKAVVVVDDRGRATGK-GFVEFAAKPPARKALERCGDGAFLLTTTPR---PVIVEPMEQF 179 (261)
T ss_dssp SCEEEEEEEEETTSCEEEE-EEEEESSHHHHHHHHHHHHHSCEESSSSCC---BCEEEECCCE
T ss_pred CCeEEEEeeeCCCCCcCcE-EEEEeCCHHHHHHHHHHhcCCeEEecCCCc---eEEEeecccc
Confidence 999999996653 344 9999999999999999995 55555 55 9999998764
No 37
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.93 E-value=1e-25 Score=185.83 Aligned_cols=107 Identities=50% Similarity=0.755 Sum_probs=99.2
Q ss_pred CCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
...++++|+|+|+||++.+|+++|+++|++||.|.+|+++.+++|++|||+|.+.++|++|++.|||..|+|+ ||+|+|
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI 100 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 100 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEE
Confidence 3456899999999999999999999999999999999998877787899999999999999999999999996 889999
Q ss_pred EEeeCCccccccCCCCCCCCCCCCCCCC
Q 013150 319 SYSRHTDLSIKVNNDRSRDYTLPSTPMV 346 (448)
Q Consensus 319 ~~ak~~~~~~~~~~~~~~~~~~~~~~~~ 346 (448)
+|||..+++++++++++|||+++.+|..
T Consensus 101 ~~ak~~~l~v~~n~~~srDyt~~~lp~~ 128 (130)
T 3zzy_A 101 DFSKLTSLNVKYNNDKSRDYTRPDLPSG 128 (130)
T ss_dssp EECSCSSCCCCCCSSSEEETTCTTCCSS
T ss_pred EecCCCceeEEecCCCcccCCCCCCCCC
Confidence 9999999999999999999999998764
No 38
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.91 E-value=1.2e-23 Score=172.85 Aligned_cols=102 Identities=42% Similarity=0.659 Sum_probs=95.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
+++++|+|+|+||++.+|+++|+++|++||.|++|+|+.+ .|++|||+|.+.++|.+|++.|||..|+|+ ||.|+|+|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence 4688999999999999999999999999999999999775 476699999999999999999999999997 67999999
Q ss_pred eeCCccccccCCCCCCCCCCCCCC
Q 013150 321 SRHTDLSIKVNNDRSRDYTLPSTP 344 (448)
Q Consensus 321 ak~~~~~~~~~~~~~~~~~~~~~~ 344 (448)
|+.+.+.++++++++|||+++.+|
T Consensus 99 Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CSCSCCCCSSCSSSEEESSCCCCC
T ss_pred ecCCcceeecCCCCCCCCCCCCCC
Confidence 999999999999999999999876
No 39
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.90 E-value=2.3e-23 Score=178.18 Aligned_cols=111 Identities=51% Similarity=0.770 Sum_probs=97.1
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
..+++++.|+|+||++.+|+++|+++|++||.|++|+++.++.+++|||+|.+.++|++|++.|||..|+|+ +|+|+|+
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~ 119 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRID 119 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEE
Confidence 346888999999999999999999999999999999997665343599999999999999999999999885 5699999
Q ss_pred EeeCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 013150 320 YSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 351 (448)
Q Consensus 320 ~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (448)
|||.+.+.++++++++|||+++.++....++.
T Consensus 120 ~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~ 151 (164)
T 1sjr_A 120 FSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS 151 (164)
T ss_dssp ECSSSSCCCCCCSSSEEESSCSCCCCCC----
T ss_pred EecCCcccccccCCCCccccCCCCCCCCCCCC
Confidence 99999999999999999999999887665444
No 40
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.85 E-value=7e-21 Score=156.89 Aligned_cols=105 Identities=47% Similarity=0.678 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 108 ~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
.++++++|+|+||+ +.+++++|+++|++||.|.+|.++++..+++|||+|.+.++|.+|++.|||..|+ .++
T Consensus 24 ~ps~VL~I~V~NL~-~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-------g~~ 95 (130)
T 3zzy_A 24 GQSPVLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NAC 95 (130)
T ss_dssp -CCSEEEEEEESCC-SCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-------TTE
T ss_pred CCCceEEEEECCCC-CCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-------CCC
Confidence 46899999999996 8999999999999999999999888654455999999999999999999999965 345
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCCCCCCC
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA 220 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (448)
++|+|+||+.+++.+++++++.|||++|.++..
T Consensus 96 ~~LrI~~ak~~~l~v~~n~~~srDyt~~~lp~~ 128 (130)
T 3zzy_A 96 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG 128 (130)
T ss_dssp EEEEEEECSCSSCCCCCCSSSEEETTCTTCCSS
T ss_pred cEEEEEecCCCceeEEecCCCcccCCCCCCCCC
Confidence 999999999999999999999999999987643
No 41
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=148.93 Aligned_cols=85 Identities=28% Similarity=0.453 Sum_probs=76.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
+...+||++|||+|||.++||++|+++|++||.|.+|++.+ +||||||+|.+.++|++||+.+++ ..+.++|++|+
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~--~~~~i~Gr~i~ 90 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAAD--NQIYIAGHPAF 90 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHH--SCEEETTEEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcC--CCceeCCcEEE
Confidence 45678999999999999999999999999999999999874 589999999999999999999985 35678999999
Q ss_pred Eeecccccc
Q 013150 91 LQYSNRQEI 99 (448)
Q Consensus 91 v~~s~~~~~ 99 (448)
|+||+.+++
T Consensus 91 V~~S~~k~l 99 (100)
T 3r27_A 91 VNYSTSQKI 99 (100)
T ss_dssp EEECSCSCC
T ss_pred EEecccccc
Confidence 999998764
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.9e-20 Score=160.68 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=109.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHh-CCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCc
Q 013150 148 KTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 226 (448)
Q Consensus 148 ~~~~~~afVeF~~~e~A~~A~~~l-~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (448)
.+-+|+++|+|.+.++|++|++.| ||.. +.| .++++++...............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~---------~~G-~~~~~~a~~~~~~~~~~~~~~~---------------- 63 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG---------VDG-EWTYDDATKTFTVTEGSHHHHH---------------- 63 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHT---------CCC-EEEEETTTTEEEEECSSSSCCC----------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCC---------CCC-ceecccccCccccccccccccc----------------
Confidence 344578999999999999999999 9988 667 9999988754321110000000
Q ss_pred cCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCC
Q 013150 227 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 306 (448)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~ 306 (448)
..........++|| |+||+.++|+++|+++|++||.|.+|++..+++|+ |||+|.+.++|.+|++.|||.
T Consensus 64 -------~~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 64 -------HMHRDSCPLDCKVY--VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGF-AFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp -------CSCSSSSTTSCEEE--EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSE-EEEEESSHHHHHHHHHHHSSS
T ss_pred -------cccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcE-EEEEECCHHHHHHHHHHcCCC
Confidence 00011223467888 89999999999999999999999999998876786 999999999999999999999
Q ss_pred ccCCCceeEEEEEEeeCCc
Q 013150 307 CIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 307 ~l~g~~~~~i~v~~ak~~~ 325 (448)
.|.|+ .|+|+|++.+.
T Consensus 134 ~~~g~---~l~v~~a~~~~ 149 (150)
T 2i2y_A 134 TLCGC---RVRVELSNGEK 149 (150)
T ss_dssp CSSSS---CCEEEECCCCC
T ss_pred EECCe---EEEEEEcCCCC
Confidence 99998 99999997753
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=7.7e-21 Score=155.46 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
.+.+|||+|||.++||++|+++|++||.|.+|+|.. +.+||||||+|.+.++|++||+.|+ +..++|+.|.|.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~----~~~~~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN----GMLLNDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT----TCEETTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC----CCEECCEEEEEEE
Confidence 467899999999999999999999999999999954 3468999999999999999999998 6799999999999
Q ss_pred ccccccccCCccccCCCCeEEEEEcCCCCCCCcHHH
Q 013150 94 SNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDV 129 (448)
Q Consensus 94 s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~ 129 (448)
+..+....... .........|||+||| ..+|++.
T Consensus 80 a~~~~~~~~~~-~~~~~~~~~lyv~Nl~-~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAEL-GARAKEFTNVYIKNFG-PGSTRAA 113 (115)
T ss_dssp SSCCCC------------------------------
T ss_pred CCCcccccccc-ccccCCCCceEeCCCC-CCccccc
Confidence 87654322111 1112233457888997 6777653
No 44
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=147.34 Aligned_cols=94 Identities=44% Similarity=0.729 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee
Q 013150 5 SSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV 84 (448)
Q Consensus 5 ~~~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~ 84 (448)
+..+..+...+++++|||+|||.++||++|+++|++||.|.+|++..+ ||||||+|.+.++|++|++.+++ ++..+
T Consensus 3 ~~s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~--~~~~~ 78 (101)
T 2cq1_A 3 SGSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSA--VTPHL 78 (101)
T ss_dssp CCCCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHH--SCCEE
T ss_pred CCCCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhcc--CCceE
Confidence 344566788889999999999999999999999999999999998755 99999999999999999998864 36789
Q ss_pred eCcEEEEeeccccccccC
Q 013150 85 RGKTVYLQYSNRQEIVNN 102 (448)
Q Consensus 85 ~g~~i~v~~s~~~~~~~~ 102 (448)
.|++|+|+|++.+.+...
T Consensus 79 ~Gr~l~V~~a~~~~~~~~ 96 (101)
T 2cq1_A 79 RNQPIYIQYSNHKELKTS 96 (101)
T ss_dssp TTEECEEEECSCSSCCCC
T ss_pred CCcEEEEEEcCcccCcCC
Confidence 999999999998776553
No 45
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=148.33 Aligned_cols=102 Identities=38% Similarity=0.555 Sum_probs=91.6
Q ss_pred cCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCc-eEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCC
Q 013150 107 DVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGF-QALVQFSDTETASSAKNALDGRSIPRYLLPENM 185 (448)
Q Consensus 107 ~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~-~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~ 185 (448)
..++++++|+|+||+ ..++++.|+++|++||.|.+|.++++. + +|||+|.+.++|..|++.|||.+|+ .
T Consensus 20 ~~ps~vl~l~V~NL~-~~vt~~~L~~~Fs~yG~V~~v~i~~~~--Gf~aFVef~~~~~A~~A~~~LnG~~i~-------g 89 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPL-YPITVDVLYTVCNPVGKVQRIVIFKRN--GIQAMVEFESVLCAQKAKAALNGADIY-------A 89 (124)
T ss_dssp CCCCSEEEEEEESCC-SCCCHHHHHHHHTTTSCEEEEEEEESS--SEEEEEEESSHHHHHHHHHHHTTCCCB-------T
T ss_pred CCCCcEEEEEEcCcC-CCCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEec-------C
Confidence 357899999999996 899999999999999999999988753 6 5999999999999999999999964 3
Q ss_pred CCeEEEEEecCCCcccccccccCCcCCCCCCCC
Q 013150 186 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 218 (448)
Q Consensus 186 ~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 218 (448)
.+++|+|+||+.+.+.++.++++.+||++|.++
T Consensus 90 ~~~~l~V~~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 90 GCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp TBSEEEEECCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred CCeEEEEEEecCCcceeecCCCCCCCCCCCCCC
Confidence 458999999999999999999999999998764
No 46
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.9e-19 Score=155.84 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=99.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCcc
Q 013150 148 KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS 227 (448)
Q Consensus 148 ~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (448)
.+.+|+|||+|.+.++|++|++.+++... .+..+.+............... .
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~----------------- 61 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG---------VDGEWTYDDATKTFTVTEGSHH--H----------------- 61 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHT---------CCCEEEEETTTTEEEEECCCCC--S-----------------
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCC---------CCCcccccCccccccccccccc--c-----------------
Confidence 45678999999999999999999886542 2223333222111000000000 0
Q ss_pred CCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHH
Q 013150 228 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 302 (448)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~ 302 (448)
.........++|| |+||+.++|+++|+++|+.||.|.+|++..+ .+|+ |||+|.+.++|.+|++.
T Consensus 62 -------~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 62 -------HHHMDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp -------SCCCCCCBCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHHHHH
T ss_pred -------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHHHHH
Confidence 0000112356788 8999999999999999999999999999654 2465 99999999999999999
Q ss_pred hcCCccCCCceeEEEEEEeeCCc
Q 013150 303 LEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 303 lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
|||..|.|+ .|+|+|++...
T Consensus 132 l~g~~~~g~---~l~v~~a~~~~ 151 (158)
T 2kn4_A 132 MDGAVLDGR---ELRVQMARYGR 151 (158)
T ss_dssp STTEESSSS---EEEEEEECCSS
T ss_pred hCCCEECCe---EEEEEECCCCC
Confidence 999999999 99999998754
No 47
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=144.58 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
...+++++|||+|||.++||++|+++|++||.|.+|++.. +||||||+|.+.++|++|++.+++ ....+.|++|+|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~--~~~~i~Gr~l~V 85 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAAD--VPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHH--SCCBSSSSBCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhcc--CCceECCEEEEE
Confidence 4567899999999999999999999999999999999875 489999999999999999999875 356799999999
Q ss_pred eecccccccc
Q 013150 92 QYSNRQEIVN 101 (448)
Q Consensus 92 ~~s~~~~~~~ 101 (448)
+|++.+....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998877654
No 48
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=146.61 Aligned_cols=87 Identities=44% Similarity=0.758 Sum_probs=78.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
..+++++|||+|||+++||+||+++|++||+|.+|+|..+ ||||||+|.+.++|++||+.+++ .+..+.|++|+|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~--~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTS--VTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTT--SCCEETTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcc--CCceECCEEEEEE
Confidence 4668999999999999999999999999999999999865 89999999999999999998873 2578999999999
Q ss_pred eccccccccCC
Q 013150 93 YSNRQEIVNNK 103 (448)
Q Consensus 93 ~s~~~~~~~~~ 103 (448)
|++.+.+...+
T Consensus 88 ~A~~~~~~~~~ 98 (105)
T 1sjq_A 88 FSNHKELKTDS 98 (105)
T ss_dssp CCSSSSCCCTT
T ss_pred EcCCCCCCccc
Confidence 99887766543
No 49
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=1.6e-19 Score=154.42 Aligned_cols=106 Identities=46% Similarity=0.669 Sum_probs=96.0
Q ss_pred CCCCeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCC
Q 013150 108 VAGNVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 187 (448)
Q Consensus 108 ~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~ 187 (448)
.+++++.|+|+||+ +.+++++|+++|++||.|.+|.++.++.+++|||+|++.++|++|++.|||..|+ .++
T Consensus 42 ~ps~vl~l~VgNL~-~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-------g~g 113 (164)
T 1sjr_A 42 GQSPVLRIIVENLF-YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NAC 113 (164)
T ss_dssp CCCCEEEEEECSCC-SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS-------SSC
T ss_pred CCCceEEEEEeCcC-CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec-------CCC
Confidence 46789999999996 8999999999999999999999987666789999999999999999999999965 356
Q ss_pred eEEEEEecCCCcccccccccCCcCCCCCCCCCCC
Q 013150 188 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAP 221 (448)
Q Consensus 188 ~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (448)
++|+|+|++.+.+.+++++++.+||+++.++...
T Consensus 114 ~~L~V~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~ 147 (164)
T 1sjr_A 114 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 147 (164)
T ss_dssp SCEEEEECSSSSCCCCCCSSSEEESSCSCCCCCC
T ss_pred cEEEEEEecCCcccccccCCCCccccCCCCCCCC
Confidence 9999999999999999999999999998877644
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=143.98 Aligned_cols=84 Identities=30% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCCCCCCccEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 10 FRYTQPPSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~-~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
.+....++++|||+|||. ++||+||+++|++||+|.+|+|+. +||||||+|.+.++|++||+.+++ ....+.|+.
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~--~~~~~~Gr~ 83 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTT--TPALVFGKP 83 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHH--SCCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcC--CCceECCcE
Confidence 344566899999999999 999999999999999999999975 479999999999999999999985 356799999
Q ss_pred EEEeecccc
Q 013150 89 VYLQYSNRQ 97 (448)
Q Consensus 89 i~v~~s~~~ 97 (448)
|+|+|++..
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999999853
No 51
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=148.87 Aligned_cols=91 Identities=43% Similarity=0.725 Sum_probs=80.9
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 9 ~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
..+...+++++|||+|||+++||+||+++|++||.|++|+|..+ ||||||+|.+.++|++||+.+++ .+..+.|++
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~--~~~~l~Gr~ 98 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTS--VTPVLRGQP 98 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHH--HCCCBTTBC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhcc--CCceECCeE
Confidence 34567788999999999999999999999999999999999865 89999999999999999999874 246899999
Q ss_pred EEEeeccccccccCC
Q 013150 89 VYLQYSNRQEIVNNK 103 (448)
Q Consensus 89 i~v~~s~~~~~~~~~ 103 (448)
|+|.|++.++++...
T Consensus 99 l~V~~a~~k~~~~~~ 113 (119)
T 2ad9_A 99 IYIQFSNHKELKTDS 113 (119)
T ss_dssp CEEEECSSSSCCCCC
T ss_pred EEEEEccCCCCCccc
Confidence 999999988776544
No 52
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=3.1e-19 Score=153.16 Aligned_cols=130 Identities=19% Similarity=0.204 Sum_probs=107.2
Q ss_pred CCcceEEEEecCHHHHHHHHHHh-hcCCCCceeeCcEEEEeeccccccccCC-------ccccCCCCeEEEEEcCCCCCC
Q 013150 53 ANRNQAFIEFADLNQAIAMISYY-ASSSEPAQVRGKTVYLQYSNRQEIVNNK-------TTADVAGNVLLVTIEGTDARL 124 (448)
Q Consensus 53 ~~kg~afVeF~~~e~A~~Al~~~-~~~~~~~~~~g~~i~v~~s~~~~~~~~~-------~~~~~~~~~~~v~V~nlp~~~ 124 (448)
+.+|+++|+|.+.++|++|++.+ + +..++| .+.+.++..+...... ...........|||+||| ..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~n----g~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~-~~ 84 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYAN----DNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG-NN 84 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHH----HHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC-SC
T ss_pred cccccceeeecCHHHHHHHHHHHhc----CCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC-CC
Confidence 45899999999999999999999 7 568999 9999987654321111 111222344567888997 88
Q ss_pred CcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 125 VSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 125 ~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
+++++|+++|++||.|.+|.+.++ ++++|||+|.+.++|.+|++.|||.. +.+++|+|.|++.+
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~---------~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRT---------LCGCRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSC---------SSSSCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCE---------ECCeEEEEEEcCCC
Confidence 999999999999999999999886 45799999999999999999999988 77999999999764
No 53
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=8.3e-19 Score=151.84 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=98.9
Q ss_pred cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeeccccccc----cCCccccCCCCeEEEEEcCCCCCCCc
Q 013150 51 VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV----NNKTTADVAGNVLLVTIEGTDARLVS 126 (448)
Q Consensus 51 ~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~~~~----~~~~~~~~~~~~~~v~V~nlp~~~~~ 126 (448)
..+++|||||+|.+.++|++|++.+++ ...+.|... +......... ..............|||+||| ..++
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~~ 83 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYAN---DNGVDGEWT-YDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT-YRTS 83 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHH---HHTCCCEEE-EETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC-TTCC
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcc---cCCCCCccc-ccCccccccccccccccccccCCCCCCEEEEeCCC-CCCC
Confidence 346799999999999999999998873 222333222 1111110000 000111122345567888997 8999
Q ss_pred HHHHHHHhcccCceEEEEEecc----CCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCC
Q 013150 127 IDVLHLVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 198 (448)
Q Consensus 127 ~e~l~~~f~~~G~v~~v~~~~~----~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~ 198 (448)
+++|+++|++||.|.+|.+..+ +++++|||+|.+.++|.+|++.|||.. +.+++|+|.|++.+
T Consensus 84 ~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~---------~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 84 PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV---------LDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE---------SSSSEEEEEEECCS
T ss_pred HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE---------ECCeEEEEEECCCC
Confidence 9999999999999999998763 467899999999999999999999988 78999999999864
No 54
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=1.8e-19 Score=147.39 Aligned_cols=107 Identities=20% Similarity=0.372 Sum_probs=93.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee-cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN-VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~-~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
|.+.+++++|||+|||.++|+++|+++|++||.|.+|.+. .++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 2 r~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l 77 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLS----GFNVSNRYL 77 (115)
T ss_dssp -CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHT----TCBSSSCBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcC----CCEECCeEE
Confidence 5567789999999999999999999999999999999984 45679999999999999999999998 668999999
Q ss_pred EEeeccccccccCCccccCCCCeEEEEEcCCCCCCCcHHHHHHHhcccCc
Q 013150 90 YLQYSNRQEIVNNKTTADVAGNVLLVTIEGTDARLVSIDVLHLVFSAFGF 139 (448)
Q Consensus 90 ~v~~s~~~~~~~~~~~~~~~~~~~~v~V~nlp~~~~~~e~l~~~f~~~G~ 139 (448)
.|.|+..+... .+++ ...+++.|+++|++||.
T Consensus 78 ~v~~a~~~~~~-----------------~~~~-~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF-----------------QKMD-TKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT-----------------TTSC-HHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh-----------------hhhh-HhHhHHHHHHHHHHhCC
Confidence 99999876532 2664 77889999999999985
No 55
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=144.48 Aligned_cols=88 Identities=27% Similarity=0.482 Sum_probs=78.4
Q ss_pred CCCCCCCCCCccEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 7 QPQFRYTQPPSKVLHLRNLPWE-CTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 7 ~~~~~~~~~~s~~l~V~nLp~~-~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
-+.++....++++|||+|||.+ +||+||+++|++||+|.+|+|. ++||||||+|.+.++|++||+.+++ .+..+.
T Consensus 15 ~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~--~~kg~aFVef~~~~~A~~Ai~~l~~--~~~~l~ 90 (112)
T 1x4f_A 15 DQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM--RMKSQAFIEMETREDAMAMVDHCLK--KALWFQ 90 (112)
T ss_dssp CCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHHH--SCCCSS
T ss_pred hhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhcc--CCceEC
Confidence 3456677889999999999998 9999999999999999999987 5699999999999999999999874 356799
Q ss_pred CcEEEEeeccccc
Q 013150 86 GKTVYLQYSNRQE 98 (448)
Q Consensus 86 g~~i~v~~s~~~~ 98 (448)
|+.|+|.|++.+.
T Consensus 91 Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 91 GRCVKVDLSEKYK 103 (112)
T ss_dssp SSCCEEEEECSCS
T ss_pred CEEEEEEECcccc
Confidence 9999999987654
No 56
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=141.00 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.+.+|||+|||.++||++|+++|++||+|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln----g~~~~gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN----GLRLQSKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC----CCEECCEEEEE
Confidence 46789999999999999999999999999999994 36679999999999999999999998 67999999999
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
+|+++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99865
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=141.62 Aligned_cols=79 Identities=25% Similarity=0.424 Sum_probs=71.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFG-KVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG-~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
|++|||+|||.++||+||+++|++|| +|.+|+|. ++++||||||+|.+.++|++||+.+++ +..++|+.|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~---~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH---SLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT---EEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC---CeEECCEEEEE
Confidence 68999999999999999999999999 89999884 367899999999999999999998753 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
+|++.+.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998754
No 58
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=140.62 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+++++|||+|||.++||++|+++|++||.|.+|+|. ++++||||||+|.+.++|++||+.+| +..++|+.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln----g~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH----LTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC----CCEECCeEE
Confidence 4678999999999999999999999999999999984 36789999999999999999999999 679999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.++....
T Consensus 79 ~V~~a~~~~ 87 (110)
T 3s8s_A 79 HAQLDIKGQ 87 (110)
T ss_dssp EEEECSTTH
T ss_pred EEEECCCCc
Confidence 999986543
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-19 Score=137.61 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCc--eEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGK--VVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~--I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
+.=.||||+|||.++||++|+++|++||. |.+|++. ++++||||||+|.+.++|++||+.+++......++||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44579999999999999999999999995 5678874 46789999999999999999999999643346799999
Q ss_pred EEEeeccc
Q 013150 89 VYLQYSNR 96 (448)
Q Consensus 89 i~v~~s~~ 96 (448)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 60
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.9e-18 Score=129.76 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
..|.-|||+||+..+||++|+++|.+||+|.++++.. +||||||||.++++|++|++.|| +..+.|++|+|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln----~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALN----NCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHT----TEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhc----CCEECCcEEEEEEC
Confidence 4578899999999999999999999999999999864 79999999999999999999999 78999999999988
Q ss_pred cc
Q 013150 95 NR 96 (448)
Q Consensus 95 ~~ 96 (448)
..
T Consensus 79 ~e 80 (89)
T 2wbr_A 79 SE 80 (89)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 61
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=132.76 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCc--cCCCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~--l~g~~~~~i~v 318 (448)
.++++|| |+|||.++|+++|+++|++||.|.+|++++.+ |+ |||+|.+.++|.+|++.|||.. |.|+ +|+|
T Consensus 19 ~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~V 91 (100)
T 3r27_A 19 PASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQ-ALVEFEDVLGACNAVNYAADNQIYIAGH---PAFV 91 (100)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCEEETTE---EEEE
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhcCCCceeCCc---EEEE
Confidence 4688898 99999999999999999999999999998765 65 9999999999999999999986 6788 9999
Q ss_pred EEeeCCcc
Q 013150 319 SYSRHTDL 326 (448)
Q Consensus 319 ~~ak~~~~ 326 (448)
+||+.+++
T Consensus 92 ~~S~~k~l 99 (100)
T 3r27_A 92 NYSTSQKI 99 (100)
T ss_dssp EECSCSCC
T ss_pred Eecccccc
Confidence 99998765
No 62
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=131.37 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.....+++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~ 84 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN----NKQLF 84 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT----TEEET
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC----CCeeC
Confidence 344566789999999999999999999999999999999954 5678999999999999999999998 67999
Q ss_pred CcEEEEeecc
Q 013150 86 GKTVYLQYSN 95 (448)
Q Consensus 86 g~~i~v~~s~ 95 (448)
|+.|.|+|++
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 63
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=132.79 Aligned_cols=91 Identities=26% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCCCCCCCC-CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCC
Q 013150 4 VSSQPQFRY-TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSS 79 (448)
Q Consensus 4 ~~~~~~~~~-~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~ 79 (448)
+.++++.+. ...++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++
T Consensus 3 sg~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~--- 79 (100)
T 2do4_A 3 SGSSGVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD--- 79 (100)
T ss_dssp CCCSSCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT---
T ss_pred CCCCCCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC---
Confidence 344555554 445689999999999999999999999999999999964 5568999999999999999999998
Q ss_pred CCceeeCcEEEEeeccccc
Q 013150 80 EPAQVRGKTVYLQYSNRQE 98 (448)
Q Consensus 80 ~~~~~~g~~i~v~~s~~~~ 98 (448)
+..++|+.|.|.|++.+.
T Consensus 80 -g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 80 -GMTIKENIIKVAISNSGP 97 (100)
T ss_dssp -TEESSSCEEEEEECCCCS
T ss_pred -CCEECCEEEEEEECCCCC
Confidence 678999999999987654
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=131.89 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 7 QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 7 ~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
....+....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +.
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~ 80 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN----GM 80 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT----TE
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC----CC
Confidence 344556677899999999999999999999999999999999953 5678999999999999999999998 67
Q ss_pred eeeCcEEEEeeccc
Q 013150 83 QVRGKTVYLQYSNR 96 (448)
Q Consensus 83 ~~~g~~i~v~~s~~ 96 (448)
.++|+.|.|+|++.
T Consensus 81 ~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 81 ELDGRRIRVSGPSS 94 (95)
T ss_dssp EETTEEEEEECCSC
T ss_pred EECCEEEEEEecCC
Confidence 99999999998763
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=8.4e-18 Score=132.68 Aligned_cols=80 Identities=31% Similarity=0.541 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
|+++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN----GYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT----TCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC----CCeECCeEEEE
Confidence 689999999999999999999999999999999953 5679999999999999999999998 67999999999
Q ss_pred eecccccc
Q 013150 92 QYSNRQEI 99 (448)
Q Consensus 92 ~~s~~~~~ 99 (448)
.+++.+..
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99987653
No 66
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=134.18 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=74.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ +..++|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD----GYDYDGYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHT----TCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcC----CCEECCeEEE
Confidence 4556789999999999999999999999999999999944 4568999999999999999999998 6689999999
Q ss_pred Eeeccccc
Q 013150 91 LQYSNRQE 98 (448)
Q Consensus 91 v~~s~~~~ 98 (448)
|+|++.+.
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987754
No 67
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=8.6e-18 Score=129.38 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN----ESELFGRT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT----TCEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC----CCEECCcE
Confidence 35678999999999999999999999999999999983 45579999999999999999999998 67899999
Q ss_pred EEEeecc
Q 013150 89 VYLQYSN 95 (448)
Q Consensus 89 i~v~~s~ 95 (448)
|.|+|++
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999874
No 68
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=130.27 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=70.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC----CCEECCeEE
Confidence 3568899999999999999999999999999999994 34578999999999999999999998 678999999
Q ss_pred EEeecccc
Q 013150 90 YLQYSNRQ 97 (448)
Q Consensus 90 ~v~~s~~~ 97 (448)
.|.|++.+
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99998754
No 69
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=132.82 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |+|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..|.|+ +|
T Consensus 18 ~gt~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l 91 (99)
T 4fxv_A 18 QGTNLI--VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY-GFVNYVTAKDAERAINTLNGLRLQSK---TI 91 (99)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccccc-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 367788 99999999999999999999999999997643 344 99999999999999999999999998 99
Q ss_pred EEEEeeC
Q 013150 317 HISYSRH 323 (448)
Q Consensus 317 ~v~~ak~ 323 (448)
+|+||++
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999986
No 70
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=131.14 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..+.|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~ 79 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD----GQVFQGRM 79 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT----TEESSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC----CCEECCcE
Confidence 35678999999999999999999999999999999995 45678999999999999999999998 67899999
Q ss_pred EEEeecccccc
Q 013150 89 VYLQYSNRQEI 99 (448)
Q Consensus 89 i~v~~s~~~~~ 99 (448)
|.|.+++.+..
T Consensus 80 l~V~~a~~~~~ 90 (99)
T 1whw_A 80 LHVLPSTIKKE 90 (99)
T ss_dssp EEEEECCCCST
T ss_pred EEEEEcCCCcc
Confidence 99999987654
No 71
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=7.2e-18 Score=136.05 Aligned_cols=84 Identities=13% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCC-ceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFG-KVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG-~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
+.......++|||+|||.++|++||+++|++|| +|..+++..++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 21 ~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ln----g~~l~Gr~ 96 (111)
T 2jvr_A 21 MSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLN----NIEFRGSV 96 (111)
T ss_dssp ----CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTT----TEEETTEE
T ss_pred cCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcC----CCEECCeE
Confidence 334455678899999999999999999999999 9999998767789999999999999999999998 67999999
Q ss_pred EEEeecccc
Q 013150 89 VYLQYSNRQ 97 (448)
Q Consensus 89 i~v~~s~~~ 97 (448)
|.|.+++..
T Consensus 97 i~V~~a~~~ 105 (111)
T 2jvr_A 97 ITVERDDNP 105 (111)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 999988653
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=130.78 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN----GFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT----TCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC----CCeeCCcEE
Confidence 35789999999999999999999999999999999954 5678999999999999999999998 678999999
Q ss_pred EEeecccccc
Q 013150 90 YLQYSNRQEI 99 (448)
Q Consensus 90 ~v~~s~~~~~ 99 (448)
.|.+++.+..
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9999877653
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=131.75 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=72.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
......++++|||+|||.++|+++|+++|++||+|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g 84 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN----GIRLYG 84 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT----TCEETT
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC----CCEECC
Confidence 344567889999999999999999999999999999999954 4568999999999999999999998 678999
Q ss_pred cEEEEeeccc
Q 013150 87 KTVYLQYSNR 96 (448)
Q Consensus 87 ~~i~v~~s~~ 96 (448)
+.|.|.|++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999998753
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=130.88 Aligned_cols=84 Identities=20% Similarity=0.271 Sum_probs=75.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++.. ..++|||||+|.+.++|++||+.++ +..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN----GRKILGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT----TEEETTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC----CCCcCCCeE
Confidence 3456789999999999999999999999999999999954 3468999999999999999999998 678999999
Q ss_pred EEeecccccc
Q 013150 90 YLQYSNRQEI 99 (448)
Q Consensus 90 ~v~~s~~~~~ 99 (448)
.|.|++.+..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999987553
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.5e-18 Score=133.07 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC--CccCCCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng--~~l~g~~~~~i~v 318 (448)
.++++|| |+||+.++|+++|+++|++||.|++|+|++++ |+ |||+|++.++|++|++.|++ ..|.|+ +|+|
T Consensus 14 ~~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-Gf-aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V 86 (105)
T 1sjq_A 14 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 86 (105)
T ss_dssp CCCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTSCCEETTE---ECCB
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 3578888 99999999999999999999999999999875 65 99999999999999999874 688998 9999
Q ss_pred EEeeCCcccc
Q 013150 319 SYSRHTDLSI 328 (448)
Q Consensus 319 ~~ak~~~~~~ 328 (448)
+||+.+.+..
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876553
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=132.11 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=77.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 9 ~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
..+....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ +..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g 82 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN----GRIVAT 82 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHT----TCBSSS
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhC----CCEeCC
Confidence 3445566899999999999999999999999999999999964 4779999999999999999999998 668999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.|++.+..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 83 KPLYVALAQRKEE 95 (103)
T ss_dssp SBCEEEECSSCCC
T ss_pred cEEEEEEeccccc
Confidence 9999999987654
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=1.6e-17 Score=135.74 Aligned_cols=84 Identities=23% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
...+++++|||+|||.++|+++|+++|++||.|.+|+|. +++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~ 95 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN----GFQIGMK 95 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT----TCEETTE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC----CCEECCE
Confidence 445678999999999999999999999999999999985 45678999999999999999999998 6789999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|.|++.+..
T Consensus 96 ~l~V~~a~~~~~ 107 (115)
T 2cpz_A 96 RLKVQLKRSKND 107 (115)
T ss_dssp ECEEECCCCSCC
T ss_pred EEEEEEcCCCCc
Confidence 999999887653
No 78
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=8.8e-18 Score=137.19 Aligned_cols=76 Identities=18% Similarity=0.179 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccC--CCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 190 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~--~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l 190 (448)
..|||+||| ..+++++|+++|++||.|.+|.++.++ ++++|||+|.+.++|++|++.|||.. +.|++|
T Consensus 6 ~~lfV~nLp-~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~---------~~g~~i 75 (115)
T 4f25_A 6 GNIFIKNLD-KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGML---------LNDRKV 75 (115)
T ss_dssp CEEEEESCC-TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCE---------ETTEEC
T ss_pred CEEEECCCC-CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCE---------ECCEEE
Confidence 358888997 899999999999999999999888733 45789999999999999999999998 789999
Q ss_pred EEEecCCC
Q 013150 191 RITYSAHT 198 (448)
Q Consensus 191 ~v~~s~~~ 198 (448)
+|.++..+
T Consensus 76 ~V~~a~~~ 83 (115)
T 4f25_A 76 FVGRFKSR 83 (115)
T ss_dssp EEEESSCC
T ss_pred EEEECCCc
Confidence 99998754
No 79
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=131.73 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=75.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~ 85 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS----GFGYDHL 85 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT----TCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC----CCeeCCc
Confidence 445678999999999999999999999999999999995 34678999999999999999999998 6789999
Q ss_pred EEEEeeccccc
Q 013150 88 TVYLQYSNRQE 98 (448)
Q Consensus 88 ~i~v~~s~~~~ 98 (448)
.|.|.|++.+.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999987764
No 80
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=1.7e-17 Score=127.06 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
+.+|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|++|++.++ +..++|+.|.|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~----g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ----GQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT----TCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc----CCeeCCcEEEEE
Confidence 4689999999999999999999999999999985 35569999999999999999999998 668999999999
Q ss_pred eccccc
Q 013150 93 YSNRQE 98 (448)
Q Consensus 93 ~s~~~~ 98 (448)
|+..++
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 987653
No 81
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=130.73 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=74.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+ ++ +..++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~----~~~~~g~ 79 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH----FHDIMGK 79 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC----CCBSSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC----CCEECCe
Confidence 3456789999999999999999999999999999999953 5679999999999999999999 77 6689999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|.+++.+..
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 82
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=129.73 Aligned_cols=85 Identities=16% Similarity=0.335 Sum_probs=75.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecC--CCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVG--ANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~--~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....++++|||+|||.++|+++|+++|++||.|.+|+|... .++|||||+|.+.++|++||+.++ +..++|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH----GTVVEGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC----CCEECCEEE
Confidence 44567899999999999999999999999999999999543 468999999999999999999998 678999999
Q ss_pred EEeeccccccc
Q 013150 90 YLQYSNRQEIV 100 (448)
Q Consensus 90 ~v~~s~~~~~~ 100 (448)
.|.++..+...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 83
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=132.09 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-------CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-------GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-------~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
.++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ----GHTVDGH 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST----TCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC----CCeeCCe
Confidence 5789999999999999999999999999999999953 2668999999999999999999998 6689999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|.+++.+..
T Consensus 79 ~l~V~~a~~~~~ 90 (98)
T 2cpf_A 79 KLEVRISERATK 90 (98)
T ss_dssp ECEEECSSCSSC
T ss_pred EEEEEEccCCCC
Confidence 999999877653
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=132.26 Aligned_cols=85 Identities=21% Similarity=0.214 Sum_probs=76.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
.....++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g 84 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD----MIKLYG 84 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS----SCBCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC----CCeECC
Confidence 3456678999999999999999999999999999999994 35678999999999999999999998 668999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.+++.+..
T Consensus 85 ~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 KPIRVNKASAHNK 97 (105)
T ss_dssp CBCEEEETTTTSC
T ss_pred eEEEEEECCCCCc
Confidence 9999999877653
No 85
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.4e-17 Score=135.30 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
...+++++|||+|||.++|+++|+++|++||+|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN----GFQVGTK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC----CCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC----CCEECCE
Confidence 345567999999999999999999999999999999994 35679999999999999999999998 6789999
Q ss_pred EEEEeecc
Q 013150 88 TVYLQYSN 95 (448)
Q Consensus 88 ~i~v~~s~ 95 (448)
.|+|+|++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999874
No 86
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=4.3e-17 Score=133.11 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
.....++++|||+|||.++|+++|+++|++||.|.+|+|. +++++|||||+|.+.++|++||+.++ +..++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g 84 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG----GQWLGG 84 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT----TCEETT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC----CCEECC
Confidence 3455688999999999999999999999999999999995 35568999999999999999999998 678999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.|++.+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 85 RQIRTNWATRKPP 97 (115)
T ss_dssp EECEEEESSCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987654
No 87
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=131.36 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=75.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN----ESELFGRT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT----TEEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC----CCEECCcE
Confidence 34578999999999999999999999999999999994 35679999999999999999999998 77999999
Q ss_pred EEEeeccccccc
Q 013150 89 VYLQYSNRQEIV 100 (448)
Q Consensus 89 i~v~~s~~~~~~ 100 (448)
|.|.|++.+...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 88
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=130.78 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=73.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++. ++||||||+|.+.++|++|++.++ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~~kg~afV~f~~~~~a~~a~~~l~----g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH--KDKGFGFIRLETRTLAEIAKVELD----NMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE--TTTTEEEEECSSSHHHHHHHHHHT----TCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe--cCCCEEEEEECCHHHHHHHHHHhC----CCEeCCceEEE
Confidence 445688999999999999999999999999999999987 458999999999999999999998 56799999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.|++.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987754
No 89
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=131.64 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
...+.+++|||+|||.++|+++|+++|++||.|. +++..++++|||||+|.+.++|++|++.++ +..++|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQ----GLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHT----TCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhC----CCEECCcEEEE
Confidence 3455689999999999999999999999999997 677778899999999999999999999998 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.+++.+.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987653
No 90
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=4.1e-17 Score=130.91 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=73.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC---
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG--- 86 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g--- 86 (448)
..+++++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+.++ +..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~gg~~ 86 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH----GSQTMPGAS 86 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHS----SCCCCTTCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHc----CCccCCCCC
Confidence 445789999999999999999999999999999999954 4568999999999999999999998 456777
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.|++.+..
T Consensus 87 ~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 87 SSLVVKFADTDKE 99 (105)
T ss_dssp SCCEEEESCSSCC
T ss_pred ccEEEEECccCcc
Confidence 9999999887653
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=133.11 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 8 ~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
........+.++|||+|||.++||++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+.++ . .
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~----~-~ 82 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN----P-I 82 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS----C-E
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC----C-c
Confidence 33344566789999999999999999999999999999999953 5678999999999999999999987 5 7
Q ss_pred eeCcEEEEeeccccc
Q 013150 84 VRGKTVYLQYSNRQE 98 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~ 98 (448)
+.|+.|.|.++....
T Consensus 83 ~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 83 IDGRKANVNLAYLGA 97 (116)
T ss_dssp ETTEECEEEESTTTC
T ss_pred CCCEEEEEEEcccCC
Confidence 999999999987654
No 92
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=130.49 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=73.7
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEeec----CCCcceEEEEecCHHHHHHHHHHhh
Q 013150 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVN--------TKCNV----GANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 9 ~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--------v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
......++.++|||+|||.++|+++|+++|++||.|.+ +++.. ++++|||||+|.+.++|++|++.++
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456678899999999999999999999999999998 88843 4678999999999999999999998
Q ss_pred cCCCCceeeCcEEEEeecc
Q 013150 77 SSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 77 ~~~~~~~~~g~~i~v~~s~ 95 (448)
+..++|+.|.|++++
T Consensus 85 ----g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 ----GKEFSGNPIKVSFAT 99 (99)
T ss_dssp ----TCBSSSSBCEEEECC
T ss_pred ----CCEeCCcEEEEEecC
Confidence 568999999999874
No 93
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=128.79 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee--CcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR--GKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~--g~~i~ 90 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.++ +..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~----g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMR----GFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHT----TCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHC----CCEeCCCCcEEE
Confidence 4567899999999999999999999999999999998765 8999999999999999999998 56788 99999
Q ss_pred Eeeccccc
Q 013150 91 LQYSNRQE 98 (448)
Q Consensus 91 v~~s~~~~ 98 (448)
|.|++.+.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987753
No 94
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=2e-17 Score=137.81 Aligned_cols=83 Identities=19% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
+....++++|||+|||.++|+++|+++|++||+|.+|++.. ++++|||||+|.+.++|++||+.++ +..|+|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln----g~~i~g 115 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN----GMELDG 115 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT----TCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC----CCEECC
Confidence 44567789999999999999999999999999999999953 5679999999999999999999998 678999
Q ss_pred cEEEEeecccc
Q 013150 87 KTVYLQYSNRQ 97 (448)
Q Consensus 87 ~~i~v~~s~~~ 97 (448)
+.|.|+|+..+
T Consensus 116 ~~l~V~~a~~~ 126 (129)
T 2kxn_B 116 RRIRVDFSITK 126 (129)
T ss_dssp SCCEESCCSSS
T ss_pred EEEEEEEecCC
Confidence 99999998764
No 95
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=131.59 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
....++++|||+|||.++|+++|+++|++||.|.+|.+.. ++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD----GAELDGR 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS----SCCBTTB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC----CCEECCc
Confidence 3456789999999999999999999999999999999954 5679999999999999999999998 5689999
Q ss_pred EEEEeeccccc
Q 013150 88 TVYLQYSNRQE 98 (448)
Q Consensus 88 ~i~v~~s~~~~ 98 (448)
.|.|.+++...
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999988654
No 96
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=130.55 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEE-Eee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNT-KCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v-~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.++++|||+|||.++|+++|+++|++||.|.++ ++. +++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN----GQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC----CCEECCEEE
Confidence 478999999999999999999999999999988 874 35578999999999999999999998 668999999
Q ss_pred EEeecccccc
Q 013150 90 YLQYSNRQEI 99 (448)
Q Consensus 90 ~v~~s~~~~~ 99 (448)
.|.|+..+..
T Consensus 79 ~v~~a~~~~~ 88 (96)
T 1x5t_A 79 TVSYAFKKDS 88 (96)
T ss_dssp EEEESCCCCC
T ss_pred EEEEecccCC
Confidence 9999887653
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=129.86 Aligned_cols=83 Identities=18% Similarity=0.345 Sum_probs=74.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.....++++|||+|||.++|+++|+++|++|| |.+|+|.. ++++|||||+|.+.++|++|| .++ +..++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~----g~~~~ 82 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN----EESLG 82 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG----TCEET
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC----CCEeC
Confidence 34556789999999999999999999999999 99999843 567999999999999999999 888 67899
Q ss_pred CcEEEEeecccccc
Q 013150 86 GKTVYLQYSNRQEI 99 (448)
Q Consensus 86 g~~i~v~~s~~~~~ 99 (448)
|+.|.|.++..+..
T Consensus 83 g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 83 NKRIRVDVADQAQD 96 (104)
T ss_dssp TEECEEEECCCCCC
T ss_pred CcEEEEEEccCCCC
Confidence 99999999887653
No 98
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.9e-17 Score=124.26 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
+..|+ |+||+..+|+++|+++|++||+|.++++... +|| |||+|.|.++|.+|++.|||..++|+ +|+|++|.
T Consensus 7 ~~wL~--VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~-kGf-aFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLL--LKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN-QGI-ALCKYTTREEANKAQMALNNCVLANT---TIFAESPS 79 (89)
T ss_dssp CCEEE--EECCCTTCCCHHHHHHHHHHSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCC
T ss_pred cceEE--EeCCCccCCHHHHHHHHHhhCCEEEEEEcCC-CcE-EEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECC
Confidence 55566 8999999999999999999999999999774 476 99999999999999999999999999 99999995
Q ss_pred CC
Q 013150 323 HT 324 (448)
Q Consensus 323 ~~ 324 (448)
..
T Consensus 80 e~ 81 (89)
T 2wbr_A 80 EN 81 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=8.2e-18 Score=134.04 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=79.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecccc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQ 97 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~~~ 97 (448)
++|||+|||.++|+++|+++|++||+|.+|++... ++|||||+|.+.++|++|++.++ +..++|+.|.|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLD----GKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHH----HSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHC----CCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999765 79999999999999999999998 45799999999999876
Q ss_pred ccccCCcc-ccCCCCeEEEEEcCCC
Q 013150 98 EIVNNKTT-ADVAGNVLLVTIEGTD 121 (448)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~v~V~nlp 121 (448)
........ .........|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 53322111 1111123457788884
No 100
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=132.39 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=74.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
....+++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~----g~~i~g 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN----GFELAG 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT----TCCSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC----CCEECC
Confidence 34456789999999999999999999999999999999953 4568999999999999999999998 678999
Q ss_pred cEEEEeecccc
Q 013150 87 KTVYLQYSNRQ 97 (448)
Q Consensus 87 ~~i~v~~s~~~ 97 (448)
+.|.|++++.+
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 99999998765
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=126.58 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=72.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. ||||||+|.+.++|++|++.++ +..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLH----HYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHT----TCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhc----CCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 7899999999999999999998 678999999999
Q ss_pred ecccccc
Q 013150 93 YSNRQEI 99 (448)
Q Consensus 93 ~s~~~~~ 99 (448)
|++.+..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9877653
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-17 Score=130.48 Aligned_cols=84 Identities=19% Similarity=0.409 Sum_probs=75.3
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-----CCCcceEEEEecCHHHHHHHHHHh-hcCCCCceee
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-----GANRNQAFIEFADLNQAIAMISYY-ASSSEPAQVR 85 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-----~~~kg~afVeF~~~e~A~~Al~~~-~~~~~~~~~~ 85 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.+ + +..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~~ 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH----STHLY 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT----CCBSS
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc----CCeEC
Confidence 4456789999999999999999999999999999999953 457999999999999999999999 6 67899
Q ss_pred CcEEEEeecccccc
Q 013150 86 GKTVYLQYSNRQEI 99 (448)
Q Consensus 86 g~~i~v~~s~~~~~ 99 (448)
|+.|.|.|++.+..
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999987653
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.7e-17 Score=128.33 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCC--ccCCCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~--~l~g~~~~~i~v 318 (448)
.++++|| |+||+.++++++|+++|++||.|.+|++++.+ |+ |||+|.+.++|.+|++.||+. .|.|+ +|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V 85 (104)
T 1wex_A 13 SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQ-ALVEFENIDSAKECVTFAADVPVYIAGQ---QAFF 85 (104)
T ss_dssp CCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 4678899 89999999999999999999999999998764 65 999999999999999999875 48898 9999
Q ss_pred EEeeCCccc
Q 013150 319 SYSRHTDLS 327 (448)
Q Consensus 319 ~~ak~~~~~ 327 (448)
+|++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999887654
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.9e-17 Score=131.03 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC--CccCCCceeEEE
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 317 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng--~~l~g~~~~~i~ 317 (448)
..++++|| |+||+.++|+++|+++|++||.|++|+|++++ |+ |||+|++.++|++|++.||+ ..|.|+ +|+
T Consensus 28 ~~ps~~Lf--VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~-AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~ 100 (119)
T 2ad9_A 28 GVPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIY 100 (119)
T ss_dssp SSCCSEEE--EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TE-EEEECSCHHHHHHHHHHHHHHCCCBTTB---CCE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhccCCceECCe---EEE
Confidence 34678898 89999999999999999999999999998875 65 99999999999999999984 689998 999
Q ss_pred EEEeeCCcccc
Q 013150 318 ISYSRHTDLSI 328 (448)
Q Consensus 318 v~~ak~~~~~~ 328 (448)
|+||+.+.+..
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99999877653
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=135.57 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhc
Q 013150 4 VSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGK---VVNTKCN---VGANRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 4 ~~~~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~---I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
..++.........+++|||+|||+++||+||+++|+.||. |.+|+|. .++++|||||+|.+.++|++||+ ++
T Consensus 4 ~~s~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~- 81 (118)
T 2db1_A 4 GSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KD- 81 (118)
T ss_dssp SCCCBCSSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GT-
T ss_pred CCCCcccCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC-
Confidence 3445555666677899999999999999999999999999 8888884 36679999999999999999999 77
Q ss_pred CCCCceeeCcEEEEeecccccc
Q 013150 78 SSEPAQVRGKTVYLQYSNRQEI 99 (448)
Q Consensus 78 ~~~~~~~~g~~i~v~~s~~~~~ 99 (448)
+..|+|+.|.|.+++.++.
T Consensus 82 ---g~~~~gr~i~V~~a~~~~~ 100 (118)
T 2db1_A 82 ---RESMGHRYIEVFKSHRTEM 100 (118)
T ss_dssp ---TEEETTEEEEEEEECHHHH
T ss_pred ---CCeECCeEEEEEECCHHHH
Confidence 6799999999999877653
No 106
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=6.1e-17 Score=129.44 Aligned_cols=86 Identities=10% Similarity=0.228 Sum_probs=75.1
Q ss_pred CCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 8 PQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 8 ~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
........++++|||+|||.++|+++|+++|++|| |.+|++.. ++++|||||+|.+.++|++|| .++ +..
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~----g~~ 79 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD----GAL 79 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT----TCE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC----CCe
Confidence 34445567889999999999999999999999997 99999953 556899999999999999999 787 679
Q ss_pred eeCcEEEEeecccccc
Q 013150 84 VRGKTVYLQYSNRQEI 99 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~~ 99 (448)
+.|+.|.|.++..+..
T Consensus 80 ~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 80 LGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp ETTEECEEEECCCCCC
T ss_pred ECCeEEEEEEecCCCC
Confidence 9999999999887653
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=136.72 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=74.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEee-cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELI----ELGKPFGKVVNTKCN-VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~----~~F~~fG~I~~v~i~-~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
...+++++|||+|||.++++++|+ ++|++||.|.+|.+. ++++||||||+|.+.++|++|++.++ +..+.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ln----g~~l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQ----GYPFQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHST----TCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHC----CCEeCC
Confidence 345678999999999999999976 699999999999884 46789999999999999999999998 668999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.|++.+..
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987543
No 108
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=2.2e-17 Score=129.08 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=74.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee--cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN--VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~--~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~----g~~~~g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMN----GMKLSGREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHT----TCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhC----CCEECCcEEE
Confidence 34578999999999999999999999999999999985 45678999999999999999999998 6689999999
Q ss_pred Eeeccccc
Q 013150 91 LQYSNRQE 98 (448)
Q Consensus 91 v~~s~~~~ 98 (448)
|.+++...
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99987654
No 109
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=126.11 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCC-----CcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGA-----NRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~-----~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..+++|||+|||.++|+++|+++|++||.|.++++...+ ++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD----GGQIDGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC----CCeECCeEE
Confidence 357899999999999999999999999999999985433 78999999999999999999998 678999999
Q ss_pred EEeecccc
Q 013150 90 YLQYSNRQ 97 (448)
Q Consensus 90 ~v~~s~~~ 97 (448)
.|+++...
T Consensus 78 ~v~~a~~~ 85 (88)
T 4a8x_A 78 TATAVLAP 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99988653
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=129.89 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=76.3
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhc--CCCCcee
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYAS--SSEPAQV 84 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~--~~~~~~~ 84 (448)
.....++++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+.++. ...+..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34566789999999999999999999999999999999953 46799999999999999999999971 0015689
Q ss_pred eCcEEEEeecccccc
Q 013150 85 RGKTVYLQYSNRQEI 99 (448)
Q Consensus 85 ~g~~i~v~~s~~~~~ 99 (448)
+|+.|.|.|+..+..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999887643
No 111
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-17 Score=131.12 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
....+++|||+|||.++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.++ +..++|+.|.|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALA----NFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHT----TCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhC----CCeECCeEEEEE
Confidence 34457899999999999999999999999999999987 669999999999999999999998 678999999999
Q ss_pred eccc
Q 013150 93 YSNR 96 (448)
Q Consensus 93 ~s~~ 96 (448)
|++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8865
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=133.08 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
..++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~----g~~~~g~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN----GKSLHGKAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS----SCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC----CCEECCEEEE
Confidence 45789999999999999999999999999999999954 5578999999999999999999998 6789999999
Q ss_pred Eeeccccccc
Q 013150 91 LQYSNRQEIV 100 (448)
Q Consensus 91 v~~s~~~~~~ 100 (448)
|.+++.....
T Consensus 80 V~~a~~~~~~ 89 (116)
T 2fy1_A 80 VEQAKKPSFQ 89 (116)
T ss_dssp EEECCCSSCS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=5.3e-17 Score=131.44 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=74.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN----GAEIMGQT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT----TCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC----CCEECCcE
Confidence 45568999999999999999999999999999999994 35678999999999999999999998 67899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.|+..+.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999987653
No 114
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=131.01 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN----GKSVDGRQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT----TCCTTSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC----CCEECCeE
Confidence 456789999999999999999999999999999999954 4578999999999999999999998 56899999
Q ss_pred EEEeecccccc
Q 013150 89 VYLQYSNRQEI 99 (448)
Q Consensus 89 i~v~~s~~~~~ 99 (448)
|.|.|++.+..
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999877653
No 115
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=131.83 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec--CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV--GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~--~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
...++++|||+|||.++|+++|+++|++||+|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH----GTVVEGRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT----TCEETTEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC----CCEECCEEEE
Confidence 345689999999999999999999999999999999953 3468999999999999999999998 6789999999
Q ss_pred Eeecccc
Q 013150 91 LQYSNRQ 97 (448)
Q Consensus 91 v~~s~~~ 97 (448)
|++++.+
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998765
No 116
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=131.24 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH---HhhcCCCceEEEEeecC-------CCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 13 TQPPSKVLHLRNLPWECTEEELI---ELGKPFGKVVNTKCNVG-------ANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~---~~F~~fG~I~~v~i~~~-------~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
....+++|||+|||.++||++|+ ++|++||+|.+|++... +++|||||+|.+.++|++||+.|+ +.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln----g~ 86 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN----NV 86 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT----TE
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC----CC
Confidence 34468999999999999999999 99999999999999533 456899999999999999999998 67
Q ss_pred eeeCcEEEEeeccccc
Q 013150 83 QVRGKTVYLQYSNRQE 98 (448)
Q Consensus 83 ~~~g~~i~v~~s~~~~ 98 (448)
.++|+.|.|.|+..+.
T Consensus 87 ~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 87 VVDGRTLKASLGTTKY 102 (111)
T ss_dssp EETTEEEEEESCCCCS
T ss_pred EECCEEEEEEeccccc
Confidence 8999999999988765
No 117
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=130.91 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=72.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN----GQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT----TCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc----CCEECCcEE
Confidence 45678999999999999999999999999999999953 5668999999999999999999998 668999999
Q ss_pred EEeecccc
Q 013150 90 YLQYSNRQ 97 (448)
Q Consensus 90 ~v~~s~~~ 97 (448)
.|.|+..+
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 99998764
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=9.2e-17 Score=126.87 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCCCCCccEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 10 FRYTQPPSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~-~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
......++++|||+|||. ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.++ +..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXES----QEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHT----TSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcC----CCEECCEE
Confidence 334567899999999998 99999999999999999999984 8999999999999999999998 67899999
Q ss_pred EEEeecccc
Q 013150 89 VYLQYSNRQ 97 (448)
Q Consensus 89 i~v~~s~~~ 97 (448)
|.|++++.+
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998654
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=127.85 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...++++|||+|||.++|+++|+++|++||.|.-+...+++++|||||+|.+.++|++||+.++ +..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN----KREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS----SEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhC----CCEeCCeEEEEE
Confidence 3457899999999999999999999999999843332456789999999999999999999998 679999999999
Q ss_pred eccccc
Q 013150 93 YSNRQE 98 (448)
Q Consensus 93 ~s~~~~ 98 (448)
|++.+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 120
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=125.53 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.++ +..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLD----NTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHT----TEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhC----CCeeCCcEEEE
Confidence 345678999999999999999999999999999999987 5699999999999999999998 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
++++.+.
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9997754
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=3.1e-17 Score=129.57 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEee-cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 13 TQPPSKVLHLRNLPWECTEEELI----ELGKPFGKVVNTKCN-VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~----~~F~~fG~I~~v~i~-~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
..+++++|||+|||.++|+++|+ ++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ----GFPFYDK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHT----TCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhC----CCEECCc
Confidence 45689999999999999999999 999999999999884 44678999999999999999999998 6789999
Q ss_pred EEEEeeccccc
Q 013150 88 TVYLQYSNRQE 98 (448)
Q Consensus 88 ~i~v~~s~~~~ 98 (448)
.|.|+|++.+.
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999987754
No 122
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-17 Score=131.34 Aligned_cols=79 Identities=13% Similarity=0.285 Sum_probs=71.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....+++|||+|||.++|+++|+++|++||.|.+|++.. +++||||||+|.+.++|++||+ ++ +..++|+.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~----~~~~~gr~l 81 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TP----GQKYKETDL 81 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SS----CCCCTTTTC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cC----CCEECCEEE
Confidence 455689999999999999999999999999999999954 6689999999999999999999 66 678999999
Q ss_pred EEeeccc
Q 013150 90 YLQYSNR 96 (448)
Q Consensus 90 ~v~~s~~ 96 (448)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998654
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=127.92 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=72.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC-----cE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG-----KT 88 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g-----~~ 88 (448)
...+++|||+|||.++|++||+++|++||+|.+|+|... |||||+|.+.++|++||+.|+ +..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~----g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLD----NTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSS----SEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHC----cCCccCCcCcceE
Confidence 345789999999999999999999999999999999754 999999999999999999998 678999 99
Q ss_pred EEEeeccccccc
Q 013150 89 VYLQYSNRQEIV 100 (448)
Q Consensus 89 i~v~~s~~~~~~ 100 (448)
|.|.+++.+...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999998876543
No 124
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.7e-17 Score=128.76 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=73.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE-EEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVN-TKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~-v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
......+++|||+|||+++||+||+++|++||.|.+ |+|. +++++|||||+|.+.++|++||+. + +..++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~----~~~~~g 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-H----KERIGH 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-T----TCCSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C----cchhCC
Confidence 345567899999999999999999999999999987 7773 567899999999999999999998 6 568999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.++..++.
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 9999998877654
No 125
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=5.7e-17 Score=130.31 Aligned_cols=84 Identities=15% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCcee---
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQV--- 84 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~--- 84 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ +..+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~----g~~~~~~ 83 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH----EQKTLPG 83 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT----TTCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc----CCcccCC
Confidence 3456789999999999999999999999999999999954 5679999999999999999999998 4455
Q ss_pred eCcEEEEeecccccc
Q 013150 85 RGKTVYLQYSNRQEI 99 (448)
Q Consensus 85 ~g~~i~v~~s~~~~~ 99 (448)
.|+.|.|.|+..+..
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 889999999877653
No 126
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=129.54 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
...++++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+.++ +..++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN----GQLLFDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC----CCEeCCCEE
Confidence 456789999999999999999999999999999999854 4568999999999999999999998 678999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.+++...
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999987544
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=126.63 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc--CCccCCCceeEE
Q 013150 239 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKL 316 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln--g~~l~g~~~~~i 316 (448)
...++++|| |+||+.++|+++|+++|++||.|++|++.+++ |+ |||+|.+.++|.+|++.|| +..+.|+ +|
T Consensus 11 ~~~p~~~l~--V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l 83 (101)
T 2cq1_A 11 DGAPSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKGK-NQ-AFLELATEEAAITMVNYYSAVTPHLRNQ---PI 83 (101)
T ss_dssp CSSCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCCEETTE---EC
T ss_pred cCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-CE-EEEEECCHHHHHHHHHHhccCCceECCc---EE
Confidence 335678899 89999999999999999999999999998764 65 9999999999999999875 6779998 99
Q ss_pred EEEEeeCCccc
Q 013150 317 HISYSRHTDLS 327 (448)
Q Consensus 317 ~v~~ak~~~~~ 327 (448)
+|+||+.+.+.
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999987655
No 128
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.69 E-value=7.5e-17 Score=129.83 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=72.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.|+ +..+.|+.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~ 99 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN----GVPLDGRP 99 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC----CCEeCCcE
Confidence 345678999999999999999999999999999999985 44678999999999999999999998 67899999
Q ss_pred EEEeecc
Q 013150 89 VYLQYSN 95 (448)
Q Consensus 89 i~v~~s~ 95 (448)
|.|++++
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=129.53 Aligned_cols=83 Identities=14% Similarity=0.331 Sum_probs=71.9
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
....+.+++|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|++||+.++ +..++|
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~----g~~~~g 84 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN----DRPIGS 84 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT----TCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC----CCeeCC
Confidence 3445667899999999999999999999999999765553 45678999999999999999999998 669999
Q ss_pred cEEEEeecccc
Q 013150 87 KTVYLQYSNRQ 97 (448)
Q Consensus 87 ~~i~v~~s~~~ 97 (448)
+.|.|+++...
T Consensus 85 ~~l~V~~a~~~ 95 (98)
T 2cqp_A 85 RKVKLVLGSGP 95 (98)
T ss_dssp EECEEEESSCS
T ss_pred eEEEEEEcCCC
Confidence 99999987643
No 130
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=128.21 Aligned_cols=87 Identities=20% Similarity=0.386 Sum_probs=75.5
Q ss_pred CCCCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 7 QPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 7 ~~~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
....+....++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+. ..
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~------~~ 78 (103)
T 2cqg_A 5 SSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ------RH 78 (103)
T ss_dssp CSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS------CE
T ss_pred CCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc------CC
Confidence 334455677889999999999999999999999999999999943 56789999999999999999994 34
Q ss_pred eeeCcEEEEeecccccc
Q 013150 83 QVRGKTVYLQYSNRQEI 99 (448)
Q Consensus 83 ~~~g~~i~v~~s~~~~~ 99 (448)
.++|+.|.|.++..+..
T Consensus 79 ~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 79 MIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EETTEEEEEECCCTTCC
T ss_pred eeCCeEEEEEecCCCCc
Confidence 89999999999887653
No 131
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.1e-17 Score=129.91 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=75.4
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
.....++++|||+|||.++|+++|+++|++||+|.+|++.. ++++|||||+|.+.++|++||+. + +..+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~----~~~~~g 84 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R----PHTLDG 84 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C----SEEETT
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C----CCeECC
Confidence 44567889999999999999999999999999999999954 45689999999999999999998 6 779999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.++..+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 9999999887653
No 132
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=130.65 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=72.1
Q ss_pred CCCCCCCccEEEE--cCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee---
Q 013150 10 FRYTQPPSKVLHL--RNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV--- 84 (448)
Q Consensus 10 ~~~~~~~s~~l~V--~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~--- 84 (448)
.+...+++++||| +||+.++||++|+++|++||+|.+|.+..+ ||||||+|.+.++|++|++.||+ ..+
T Consensus 18 ~~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG----~~~~~~ 91 (114)
T 2cq2_A 18 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNG----KEVVDD 91 (114)
T ss_dssp CCCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTT----CEEECT
T ss_pred CcCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCC----CEEccc
Confidence 3456678999999 779999999999999999999999998754 89999999999999999999994 455
Q ss_pred --eCcEEEEeeccccc
Q 013150 85 --RGKTVYLQYSNRQE 98 (448)
Q Consensus 85 --~g~~i~v~~s~~~~ 98 (448)
.|+.|+|.|+....
T Consensus 92 lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 92 LGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TSCEEECEEEEESCCC
T ss_pred cCCCcEEEEEecccCc
Confidence 58899999876543
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=125.23 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=71.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.++ +..++|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLN----GKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHT----TCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhC----CCEECCcEEEEE
Confidence 45678999999999999999999999999999999987 5699999999999999999998 678999999999
Q ss_pred eccccc
Q 013150 93 YSNRQE 98 (448)
Q Consensus 93 ~s~~~~ 98 (448)
+++...
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987764
No 134
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.3e-17 Score=123.54 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHh-hcCCCCceeeCcEEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYY-ASSSEPAQVRGKTVYL 91 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~-~~~~~~~~~~g~~i~v 91 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.+ + +..++|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~----~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFN----KLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTT----TCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcC----CeeECCCEEEE
Confidence 345689999999999999999999999999999999875 5899999999999999999988 5 67999999999
Q ss_pred eecc
Q 013150 92 QYSN 95 (448)
Q Consensus 92 ~~s~ 95 (448)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 135
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=1.5e-17 Score=132.19 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=72.2
Q ss_pred CccEEEEcCCCC------CCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 16 PSKVLHLRNLPW------ECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 16 ~s~~l~V~nLp~------~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.+++|||+|||. ++++++|+++|++||.|.+|+|. ++++||||||+|.+.++|++||+.++ +..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln----g~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH----GKRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT----TCBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC----CcccC
Confidence 478999999999 99999999999999999999984 36679999999999999999999998 67899
Q ss_pred C-cEEEEeeccccc
Q 013150 86 G-KTVYLQYSNRQE 98 (448)
Q Consensus 86 g-~~i~v~~s~~~~ 98 (448)
| +.|.|.++..++
T Consensus 81 g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 81 LKHRLFLYTMKDVE 94 (100)
T ss_dssp SSCBCEEEESHHHH
T ss_pred CCeEEEEEECchhh
Confidence 8 999999987654
No 136
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=126.10 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHH----HhhcCCCceEEEEeecCCC-cceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 14 QPPSKVLHLRNLPWECTEEELI----ELGKPFGKVVNTKCNVGAN-RNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~----~~F~~fG~I~~v~i~~~~~-kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
....++|||+|||.++|+++|+ ++|++||+|.+|++...+. ||||||+|.+.++|++||+.++ +..++|+.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~----g~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLH----RYKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHT----TEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhC----CCEECCeE
Confidence 3456889999999999999999 9999999999999964332 8999999999999999999998 67999999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|++++...
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999987653
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-17 Score=127.37 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=74.8
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 10 ~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
......++++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ----GAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTT----EEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhC----CCEECCeEE
Confidence 33455678999999999999999999999999999877 4567889999999999999999999998 678999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.++..+.
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999987654
No 138
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=130.36 Aligned_cols=84 Identities=14% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceE--------EEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCC
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVV--------NTKCNV----GANRNQAFIEFADLNQAIAMISYYASSS 79 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~--------~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~ 79 (448)
....++++|||+|||.++|+++|+++|++||.|. .|+|.. ++++|||||+|.+.++|++||+.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--- 86 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD--- 86 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT---
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC---
Confidence 3456789999999999999999999999999998 588843 4678999999999999999999998
Q ss_pred CCceeeCcEEEEeecccccc
Q 013150 80 EPAQVRGKTVYLQYSNRQEI 99 (448)
Q Consensus 80 ~~~~~~g~~i~v~~s~~~~~ 99 (448)
+..+.|+.|.|.+++.+..
T Consensus 87 -g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 -GKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp -TCEETTEECEEECSSCCCC
T ss_pred -CCccCCCEEEEEECCCCCC
Confidence 6789999999999887653
No 139
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-17 Score=131.98 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCce----EEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKV----VNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I----~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.| ..+++.+++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~----g~~~~g~~ 96 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN----GYKLYGKI 96 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST----TCBCSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC----CCEeCCcE
Confidence 34578999999999999999999999999999 67777788999999999999999999999998 66889999
Q ss_pred EEEeecccccc
Q 013150 89 VYLQYSNRQEI 99 (448)
Q Consensus 89 i~v~~s~~~~~ 99 (448)
|.|.|++.+..
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99999987653
No 140
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-17 Score=126.59 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=68.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++++|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK----ASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH----HHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc----CCeEeeEEE
Confidence 4578999999999999999999999999999999984 35679999999999999999999999 567888888
Q ss_pred EEeec
Q 013150 90 YLQYS 94 (448)
Q Consensus 90 ~v~~s 94 (448)
+++++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 77654
No 141
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1e-16 Score=129.23 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
....++++|||+|||.++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.++ +..++|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVH----GKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHT----TCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcC----CCEECCeEEEE
Confidence 345678999999999999999999999999999999987 8999999999999999999998 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.|++.+.
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987653
No 142
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=1.6e-17 Score=129.42 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFG--KVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG--~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.+|||+|||.++||++|+++|++|| .|.++++. +++++|||||+|.+.++|++||+.++ +..++|+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~----g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP----KRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG----GSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC----CCeeCCEEEEE
Confidence 4799999999999999999999999 99999884 45679999999999999999999999 56899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.++....
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9887643
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=134.30 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=74.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++||++|+++|++||+|++|++.. ++++|||||+|.+.++|++||+.++ +..++|+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN----GFNILNKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT----TEECSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC----CCEECCeE
Confidence 345578999999999999999999999999999999953 4568999999999999999999998 67899999
Q ss_pred EEEeeccccccc
Q 013150 89 VYLQYSNRQEIV 100 (448)
Q Consensus 89 i~v~~s~~~~~~ 100 (448)
|.|.+++.+...
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=1.1e-16 Score=123.78 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=68.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++. + +..++|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~----~~~~~g~~ 81 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K----EHRLDGRV 81 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S----CEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C----CCEECCEE
Confidence 45678999999999999999999999999999999995 356799999999999999999976 3 45799999
Q ss_pred EEEeec
Q 013150 89 VYLQYS 94 (448)
Q Consensus 89 i~v~~s 94 (448)
|.|+++
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999864
No 145
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=130.56 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=68.0
Q ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee-----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 9 QFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN-----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 9 ~~~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~-----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
.........++|||+|||.++|+++|+++|++|| |.+|++. +++++|||||+|.+.++|++|| .++ +..
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~----g~~ 84 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN----EES 84 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT----TCC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC----CCE
Confidence 3444566789999999999999999999999999 9999994 4557999999999999999999 787 668
Q ss_pred eeCcEEEEeecccc
Q 013150 84 VRGKTVYLQYSNRQ 97 (448)
Q Consensus 84 ~~g~~i~v~~s~~~ 97 (448)
++|+.|.|++++.+
T Consensus 85 ~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 85 LGNRRIRVDVADQA 98 (100)
T ss_dssp BTTBCCCCEECCCS
T ss_pred ECCeEEEEEeccCC
Confidence 99999999998764
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=123.95 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCC--CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPF--GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~f--G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....++++|||+|||.++|+++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.++ +..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALN----GKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHS----SEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhC----CCEeCCcEE
Confidence 345678999999999999999999999999 999998865 7899999999999999999998 678999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.|++.+.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987754
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8.7e-17 Score=127.45 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCCcEEEEEEeCCCc-cCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCC--ccCCCceeEEE
Q 013150 241 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~-~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~--~l~g~~~~~i~ 317 (448)
.++++|| |+||+. ++|+++|+++|++||.|.+|+|++.+ |+ |||+|.+.++|.+|++.|||. .|.|+ +|+
T Consensus 13 ~p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~ 85 (102)
T 1x4d_A 13 ETRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NE-AFIEMATTEDAQAAVDYYTTTPALVFGK---PVR 85 (102)
T ss_dssp CCCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SC-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECE
T ss_pred CCCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHHcCCCceECCc---EEE
Confidence 3578888 999999 99999999999999999999998765 65 999999999999999999975 48998 999
Q ss_pred EEEeeCC
Q 013150 318 ISYSRHT 324 (448)
Q Consensus 318 v~~ak~~ 324 (448)
|+||+..
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999854
No 148
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=129.80 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcC-CCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCce-eeC
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKP-FGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQ-VRG 86 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~-fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~-~~g 86 (448)
....++++|||+|||.++|+++|+++|++ ||.|.+|+|. +++++|||||+|.+.++|++||+.++ +.. ++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~~g 79 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQ----GAVGLGS 79 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTT----TCCSSSS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHcc----CCcccCC
Confidence 34567899999999999999999999999 9999999995 35678999999999999999999998 556 999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|.++..+..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 9999999876653
No 149
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=128.45 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCCCccEEEEcCCCCCC------CHHHHHHhhcCCCceEEEEee--cCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee
Q 013150 13 TQPPSKVLHLRNLPWEC------TEEELIELGKPFGKVVNTKCN--VGANRNQAFIEFADLNQAIAMISYYASSSEPAQV 84 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~------te~~L~~~F~~fG~I~~v~i~--~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~ 84 (448)
....+++|||+|||.++ |+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~----g~~~ 86 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD----GYKL 86 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCS----SEEC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhC----Cccc
Confidence 34457899999999999 789999999999999999985 56789999999999999999999998 6789
Q ss_pred eCc-EEEEeecccc
Q 013150 85 RGK-TVYLQYSNRQ 97 (448)
Q Consensus 85 ~g~-~i~v~~s~~~ 97 (448)
+|+ .|.|.++...
T Consensus 87 ~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHTFRVNLFTDF 100 (105)
T ss_dssp STTCEEEEECSCCC
T ss_pred CCCceEEEEEcchH
Confidence 998 9999988654
No 150
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.9e-17 Score=129.01 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceE-EEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVV-NTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~-~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
...++++|||+|||.++||++|+++|++||.|. +|++.. ++++|||||+|.+.++|++|++.++ +..+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~ 80 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN----GKPLPGA 80 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT----TSEESSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc----CCccCCC
Confidence 355789999999999999999999999999999 999853 4578999999999999999999998 6789999
Q ss_pred E----EEEeecccc
Q 013150 88 T----VYLQYSNRQ 97 (448)
Q Consensus 88 ~----i~v~~s~~~ 97 (448)
. |+|.|++..
T Consensus 81 ~~~~~l~v~~a~~~ 94 (99)
T 2div_A 81 TPAKRFKLNYATYS 94 (99)
T ss_dssp SSCEECCEEETTCC
T ss_pred CcceeEEEeecCCC
Confidence 8 999998764
No 151
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.5e-16 Score=125.90 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=71.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..++++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++||+.++ +..+.|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMN----GKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHT----TEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHC----CCccCCCEEEEEE
Confidence 4578999999999999999999999999999999986 6799999999999999999998 6789999999999
Q ss_pred cccccc
Q 013150 94 SNRQEI 99 (448)
Q Consensus 94 s~~~~~ 99 (448)
++.+..
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 877654
No 152
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.6e-17 Score=131.40 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=71.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
+++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++|| .++ +..++|+.|.|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~----g~~~~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT----GQRLLGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT----TEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC----CCEeCCeEEEEE
Confidence 57999999999999999999999999999999953 567999999999999999999 888 679999999999
Q ss_pred ecccccc
Q 013150 93 YSNRQEI 99 (448)
Q Consensus 93 ~s~~~~~ 99 (448)
+++.+..
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9877653
No 153
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-17 Score=131.24 Aligned_cols=82 Identities=12% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCce-EEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKV-VNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I-~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|+.||.| .+|+|. +++++|||||+|.+.++|++||+. + +..|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~----~~~~~gr~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-H----RKKLNGRE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-C----SEEETTEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-C----CCccCCeE
Confidence 45578999999999999999999999999999 788884 366899999999999999999988 6 67999999
Q ss_pred EEEeecccccc
Q 013150 89 VYLQYSNRQEI 99 (448)
Q Consensus 89 i~v~~s~~~~~ 99 (448)
|.|.++..++.
T Consensus 86 i~v~~a~~~~~ 96 (114)
T 2cpy_A 86 AFVHVVTLEDM 96 (114)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999887653
No 154
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=128.47 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
....+++|||+|||.++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.++ +..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVN----GTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHT----TCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcC----CCEECCcEEEEE
Confidence 4556889999999999999999999999999999999755 8999999999999999999998 678999999999
Q ss_pred ecccccc
Q 013150 93 YSNRQEI 99 (448)
Q Consensus 93 ~s~~~~~ 99 (448)
|++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9887653
No 155
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1e-16 Score=124.45 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
.+++|||+|||.++|+++|+++|++||.|.++++. +++++|||||+|.+.++|++|+ .++ +..+.|+.|.|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~----g~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD----ESLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT----TCEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC----CCEECCcEEEE
Confidence 46899999999999999999999999999999984 4567999999999999999999 888 67899999999
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
.+++.
T Consensus 80 ~~a~~ 84 (89)
T 3ucg_A 80 IPKRT 84 (89)
T ss_dssp EETTT
T ss_pred EEccC
Confidence 98865
No 156
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=130.57 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++|++.++ +..++|+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK----GVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT----TEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC----CCEECCcEE
Confidence 345578999999999999999999999999999999954 4578999999999999999999998 678999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|+++....
T Consensus 107 ~V~~a~~~~ 115 (124)
T 2kt5_A 107 DIQLVASQI 115 (124)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 999987754
No 157
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.3e-16 Score=128.77 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ ..++|+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-----~~l~g~~ 95 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-----HELDSKT 95 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-----EEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-----CcCCCEE
Confidence 455689999999999999999999999999999999943 6679999999999999999999763 5899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.++..+.
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=4.6e-17 Score=128.08 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+++++|||+|||.++|++||+++|++||.|.++++. +++++|||||+|.+.++|++||+.++ +..++|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~----g~~~~gr~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN----DRPIGSRKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC----CCeECCcEE
Confidence 4467999999999999999999999999999876663 35678999999999999999999998 678999999
Q ss_pred EEeecc
Q 013150 90 YLQYSN 95 (448)
Q Consensus 90 ~v~~s~ 95 (448)
.|.+++
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999875
No 159
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=129.69 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.+++|||+|||.++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|++||+.++ +..++|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP--EGGITAIVEFLEPLEARKAFRHLA----YSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC--SSSSCEEEEESCHHHHHHHHHHHT----TCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--CCCCEEEEEeCCHHHHHHHHHHhC----CCEECCeEEEEEECC
Confidence 46899999999999999999999999999999987 468999999999999999999998 668999999999987
Q ss_pred cccc
Q 013150 96 RQEI 99 (448)
Q Consensus 96 ~~~~ 99 (448)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.3e-16 Score=132.37 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=74.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|.|. +++++|||||+|.+.++|++||+.++ +..+.|+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN----GQDLMGQP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT----TCBSSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC----CCeeCCeE
Confidence 44568899999999999999999999999999999995 55679999999999999999999998 67899999
Q ss_pred EEEeecccccc
Q 013150 89 VYLQYSNRQEI 99 (448)
Q Consensus 89 i~v~~s~~~~~ 99 (448)
|.|+|+..+..
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999876543
No 161
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=124.34 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=64.3
Q ss_pred ccEEEEcCCCCCC------CHHHHHHhhcCCCceEEEEee--cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc-
Q 013150 17 SKVLHLRNLPWEC------TEEELIELGKPFGKVVNTKCN--VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK- 87 (448)
Q Consensus 17 s~~l~V~nLp~~~------te~~L~~~F~~fG~I~~v~i~--~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~- 87 (448)
+++|||+|||.++ |+++|+++|++||+|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ln----g~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNAD----GYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSS----SCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhc----CcccCCce
Confidence 5899999999999 789999999999999999984 45789999999999999999999998 5688888
Q ss_pred EEEE
Q 013150 88 TVYL 91 (448)
Q Consensus 88 ~i~v 91 (448)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 7765
No 162
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7e-16 Score=121.81 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
....++++|||+|| ++|+++|+++|++||+|.+|++. +++|||||+|.+.++|++||+.++ +..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~----g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELN----GTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTT----TEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhC----CCeECCeEEEE
Confidence 34557899999996 99999999999999999999985 679999999999999999999998 67899999999
Q ss_pred eecccccc
Q 013150 92 QYSNRQEI 99 (448)
Q Consensus 92 ~~s~~~~~ 99 (448)
.|+..+..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99877643
No 163
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=127.09 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
++.++|| |.||+.++|+++|+++|++||.|++|+|+.++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 4 ~p~~~lf--V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~A~~Ai~~lng~~~~gr---~ 77 (110)
T 3s8s_A 4 IPLKEVT--FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGL-ARVLFTSTRGAKETVKNLHLTSVMGN---I 77 (110)
T ss_dssp SCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3467888 89999999999999999999999999996543 355 99999999999999999999999999 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|++++...
T Consensus 78 i~V~~a~~~~ 87 (110)
T 3s8s_A 78 IHAQLDIKGQ 87 (110)
T ss_dssp CEEEECSTTH
T ss_pred EEEEECCCCc
Confidence 9999997664
No 164
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=137.73 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFG--KVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG--~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.+++|||+|||.++||++|+++|++|| .|.+|+|. ++++||||||+|.+.++|++||+.++ +..|+|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln----g~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP----GKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST----TCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC----CCEECCeEe
Confidence 468999999999999999999999999 99999984 56789999999999999999999998 679999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.++..+.
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999987654
No 165
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=125.25 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=72.8
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe-ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 11 RYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 11 ~~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i-~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
.....++++|||+|||.++|+++|+++|+.|+.|.-+.. .+++++|||||+|.+.++|++||+.++ +..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME----DGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC----CCeECCeEE
Confidence 345568999999999999999999999999976654443 356678999999999999999999998 678999999
Q ss_pred EEeecccccc
Q 013150 90 YLQYSNRQEI 99 (448)
Q Consensus 90 ~v~~s~~~~~ 99 (448)
.|.|++.+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999987653
No 166
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=8.5e-17 Score=134.52 Aligned_cols=85 Identities=19% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE--EEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVN--TKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
...++++|||+|||.++||++|+++|++||.|.. |+|. ++++||||||+|.+. +|++||+.+++....+.++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4467899999999999999999999999999966 8884 466899999999999 99999999994222238999
Q ss_pred cEEEEeeccccc
Q 013150 87 KTVYLQYSNRQE 98 (448)
Q Consensus 87 ~~i~v~~s~~~~ 98 (448)
+.|.|++++.+.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999987654
No 167
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=9.4e-17 Score=134.84 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=71.6
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCcc
Q 013150 152 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 231 (448)
Q Consensus 152 ~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (448)
.++|.+|++...|..|++.++|.. ..++. ...+...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~---------~~g~~-~~~~~~~---------------------------------- 40 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQ---------QMGRG-SMSYGRP---------------------------------- 40 (135)
T ss_dssp ----------------------------------------CCSCCS----------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCC---------CCCCC-CCCcCCC----------------------------------
Confidence 358899999999999999998765 22221 1111110
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCC
Q 013150 232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH 306 (448)
Q Consensus 232 ~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~ 306 (448)
......+++|| |.||+.++|+++|+++|++||.|++|++..++ +|+ |||+|.+.++|++|++.|||.
T Consensus 41 -----~~~~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 41 -----PPDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp -----CSSGGGCCCEE--EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC-CEEECSCHHHHHHHHTTTTTC
T ss_pred -----CCCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCC
Confidence 00112356788 89999999999999999999999999996542 466 999999999999999999999
Q ss_pred ccCCCceeEEEEEEeeCCc
Q 013150 307 CIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 307 ~l~g~~~~~i~v~~ak~~~ 325 (448)
.|.|+ .|+|+|++...
T Consensus 113 ~i~g~---~l~V~~a~~~~ 128 (135)
T 2lea_A 113 VLDGR---ELRVQMARYGR 128 (135)
T ss_dssp CSSSS---CCEEEECCCCC
T ss_pred EECCE---EEEEEECCCCC
Confidence 99999 99999998754
No 168
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7.2e-16 Score=123.16 Aligned_cols=76 Identities=25% Similarity=0.492 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
.+++|| |.||+.++|+++|+++|++||.|.+|++.+ ++ |||+|.+.++|++|++.|||..|.|+ .|+|+|+
T Consensus 10 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLF--VRNLANTVTEEILEKAFSQFGKLERVKKLK---DY-AFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFA 80 (103)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CE-EEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEc
Confidence 467788 899999999999999999999999999873 55 99999999999999999999999998 9999999
Q ss_pred eCCcc
Q 013150 322 RHTDL 326 (448)
Q Consensus 322 k~~~~ 326 (448)
+....
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87653
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.1e-17 Score=125.88 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=70.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCC-ceeeCcEEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGK-VVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEP-AQVRGKTVY 90 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~-I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~-~~~~g~~i~ 90 (448)
...++++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.++ + ..++|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~----g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLS----GKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHT----TTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHcc----CCeeECCEEEE
Confidence 3467899999999999999999999999999 665555 358999999999999999999998 5 799999999
Q ss_pred Eeecccccc
Q 013150 91 LQYSNRQEI 99 (448)
Q Consensus 91 v~~s~~~~~ 99 (448)
|.|++.+..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999987643
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=122.89 Aligned_cols=80 Identities=21% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
....++.+|||+|||.++||++|+++|++||.|.+|+|.. ++||||||+|.+.++|++ +++ ....++|+.|.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-~srGfaFV~F~~~~~A~~----~~~--~~~~~~g~~v~v 78 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-PFRAFAFVTFADDKVAQS----LCG--EDLIIKGISVHI 78 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-SCCSEEEEEESCHHHHHH----HTT--CEEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-CCCCEEEEEECCHHHHHH----HcC--CCcccCCEEEEE
Confidence 4566789999999999999999999999999999999865 489999999999999984 332 245667999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.++..+.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 171
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3e-16 Score=126.96 Aligned_cols=78 Identities=13% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 13 TQPPSKVLHLRNLPWE-CTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~-~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
...++++|||+|||.+ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|++||+.++ +..++|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGEN----GRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHT----TCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcC----CCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 58999999999999999999998 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.|++...
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=124.40 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEE-EeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNT-KCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v-~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.....+++|||+|||.++|+++|+++|++||.|.+| .+...+..+.|||+|.+.++|++||+.++ +..++|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~----g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN----GFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHT----TCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhC----CCEECCcEEE
Confidence 344568999999999999999999999999999999 47666666779999999999999999998 6789999999
Q ss_pred Eeeccccc
Q 013150 91 LQYSNRQE 98 (448)
Q Consensus 91 v~~s~~~~ 98 (448)
|.++..++
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99988764
No 173
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=122.59 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
....+++|||+|||.++|++||+++|+.| .|.+|++. +++++|||||+|.+.++|++||+ ++ +..++|+.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~----g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CN----REYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SC----SEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hC----CceeCCcEE
Confidence 44568999999999999999999999999 99999885 35678999999999999999999 88 779999999
Q ss_pred EEeecccc
Q 013150 90 YLQYSNRQ 97 (448)
Q Consensus 90 ~v~~s~~~ 97 (448)
.|.+++.+
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99998765
No 174
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=131.89 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
....++++|||+|||.++|+++|+++|++||+|.+|++. +++++|||||+|.+.++|++||+.++ +..++|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~ 133 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN----ESELFGR 133 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST----EEEETTE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC----CCEECCE
Confidence 345678999999999999999999999999999999994 35679999999999999999999998 6789999
Q ss_pred EEEEeec
Q 013150 88 TVYLQYS 94 (448)
Q Consensus 88 ~i~v~~s 94 (448)
.|.|+|+
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999875
No 175
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-17 Score=129.16 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
.++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++.++ +..++|+.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~----g~~~~g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN----GREFSGRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS----SBSCSSSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC----CCeeCCcEEE
Confidence 357899999999999999999999999999999985 35568999999999999999999998 6789999999
Q ss_pred Eeecccccc
Q 013150 91 LQYSNRQEI 99 (448)
Q Consensus 91 v~~s~~~~~ 99 (448)
|.|+..+..
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999887653
No 176
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-16 Score=125.46 Aligned_cols=78 Identities=23% Similarity=0.429 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 13 TQPPSKVLHLRNLPW-ECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~-~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
..+++++|||+|||. ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.++ +..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~----g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECES----QEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHT----CSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcC----CCeeCCcEEEE
Confidence 356799999999998 99999999999999999999984 8999999999999999999998 66889999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.+++.+.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9987654
No 177
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.1e-16 Score=133.93 Aligned_cols=83 Identities=18% Similarity=0.302 Sum_probs=73.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGK---VVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~---I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.....+++|||+|||+++||+||+++|++||. |.+|+|. .+++||||||+|.+.++|++||+ ++ +..|+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~----g~~l~ 113 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KD----RESMG 113 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TT----EEESS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cC----CCEEC
Confidence 34556889999999999999999999999999 7888884 36789999999999999999999 77 67899
Q ss_pred CcEEEEeecccccc
Q 013150 86 GKTVYLQYSNRQEI 99 (448)
Q Consensus 86 g~~i~v~~s~~~~~ 99 (448)
|+.|.|.++..++.
T Consensus 114 gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 114 HRYIEVFKSHRTEM 127 (136)
T ss_dssp SSEEEEEECCHHHH
T ss_pred CEEEEEEECChHHH
Confidence 99999998876653
No 178
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=128.18 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCc-eEEEEee-----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGK-VVNTKCN-----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~-I~~v~i~-----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
..++++|||+|||.++|+++|+++|++||. |.+|.+. +++++|||||+|.+.++|++|++.++. .+..+.|+
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--g~~~~~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP--GRIQLWGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTT--CCSCBTTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhC--CCceecCC
Confidence 456899999999999999999999999998 9999986 346799999999999999999999852 13789999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|.|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 999999987643
No 179
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=125.70 Aligned_cols=81 Identities=21% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
.....+++|||+|||+++||+||+++|++||.| +|+|. ++++||||||+|.+.++|++||+ ++ +..|+|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~----~~~~~gr~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KD----KANMQHRY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TS----SCCSSSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC----CCeECCcE
Confidence 345578999999999999999999999999965 88884 45679999999999999999995 56 66899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.++...+
T Consensus 84 i~V~~~~~~~ 93 (102)
T 1wez_A 84 VELFLNSTAG 93 (102)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9998876654
No 180
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=121.61 Aligned_cols=80 Identities=18% Similarity=0.354 Sum_probs=71.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
...++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 86 (103)
T 2cqi_A 13 GQPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVK 86 (103)
T ss_dssp CCCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CCCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCE-EEEEECCHHHHHHHHHHhCCCCcCCC---eEE
Confidence 4567888 89999999999999999999999999997643 465 99999999999999999999999998 999
Q ss_pred EEEeeCCcc
Q 013150 318 ISYSRHTDL 326 (448)
Q Consensus 318 v~~ak~~~~ 326 (448)
|+|++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999988653
No 181
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=3.9e-16 Score=134.63 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=74.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||+|.+|+|.. ++++|||||+|.+.++|++||+.++ +..|.|+.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~ 110 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN----GTRLDDRI 110 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT----TSEETTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC----CCEECCeE
Confidence 345789999999999999999999999999999999953 5578999999999999999999998 67899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.|++...
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 182
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=122.96 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCC-----CceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g-----~~~~~i 316 (448)
..+.|| |.||+.++|+++|+++|++||.|++|+|..+ |+ |||+|.+.++|++||+.|||..|.| + .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i 85 (108)
T 1x4c_A 14 SENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YI 85 (108)
T ss_dssp CCCEEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CE-EEEEECCHHHHHHHHHHHCcCCccCCcCcce---EE
Confidence 467788 8999999999999999999999999999876 65 9999999999999999999999999 7 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|++++.+.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998754
No 183
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.3e-16 Score=121.26 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=69.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |.|||.++++++|+++|++||.|.++++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 14 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 87 (94)
T 2e5h_A 14 PSKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV-AFILFLDKDSAQNCTRAINNKQLFGR---V 87 (94)
T ss_dssp CCTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTC-EEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 4567888 89999999999999999999999999996542 466 99999999999999999999999998 9
Q ss_pred EEEEEee
Q 013150 316 LHISYSR 322 (448)
Q Consensus 316 i~v~~ak 322 (448)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 184
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-17 Score=128.37 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=71.1
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
....++++|||+|||.++|+++|+++|++||.|.++.+ .+++++|||||+|.+.++|++||+ ++ +..+.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~----g~~~~g~~ 86 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT----GLKVFGNE 86 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG----GCCBTTBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC----CcEECCcE
Confidence 34557899999999999999999999999998876222 356789999999999999999999 88 56899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.+++.+.
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999987754
No 185
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=129.73 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
+.++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+. + +..++|+.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~----~~~~~g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R----PHSIDGRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C----SEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C----CcEECCEEEEE
Confidence 368999999999999999999999999999999954 56789999999999999999998 6 67899999999
Q ss_pred eecccccc
Q 013150 92 QYSNRQEI 99 (448)
Q Consensus 92 ~~s~~~~~ 99 (448)
.++..+..
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99887653
No 186
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.3e-16 Score=125.52 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=70.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCcee-----
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQV----- 84 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~----- 84 (448)
...++++|||+|||.++|+++|+++|++||.|.+|+|.. ++++|||||+|.+.++|++||+.+++ ..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g----~~~~~~~~ 96 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG----KFIKTPPG 96 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT----CCCCCCTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC----CEEcCCcc
Confidence 445789999999999999999999999999999999954 46689999999999999999999994 455
Q ss_pred ---eCcEEEEeecccc
Q 013150 85 ---RGKTVYLQYSNRQ 97 (448)
Q Consensus 85 ---~g~~i~v~~s~~~ 97 (448)
.+++|.|.|+++.
T Consensus 97 ~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCCCSSCBEEEECCCS
T ss_pred ccCCCCceeEEccCCC
Confidence 5778888888753
No 187
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=3.5e-16 Score=121.15 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeecc
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSN 95 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s~ 95 (448)
.+++|||+|||.++|+++|+++|++| .|.++++. +++|||||+|.+.++|++|++.++ +..++|+.|.|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~----g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFH----QYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHT----TEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhC----CCeECCcEEEEEEcC
Confidence 57899999999999999999999999 99999885 679999999999999999999998 679999999999986
Q ss_pred ccc
Q 013150 96 RQE 98 (448)
Q Consensus 96 ~~~ 98 (448)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 188
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=4.8e-16 Score=119.49 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=68.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
++++|| |.|||.++++++|+++|++||.|.++++..+ .+|+ |||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 79 (85)
T 3mdf_A 6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 79 (85)
T ss_dssp CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 467888 8999999999999999999999999998554 2455 99999999999999999999999998 99
Q ss_pred EEEEee
Q 013150 317 HISYSR 322 (448)
Q Consensus 317 ~v~~ak 322 (448)
+|+|||
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 189
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.64 E-value=4.7e-16 Score=135.39 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=71.2
Q ss_pred EEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEEEEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCC
Q 013150 156 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD 235 (448)
Q Consensus 156 VeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (448)
.+|++.++|+.|+..|++.... ..++.....++...... .+........ .....
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~-------~kgr~~~~~~~~~~~~~---------~~~~~~~s~~----------~~~~~ 64 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH-------RKGRGFGSDSNTREAIH---------SYERVRNEDD----------DELEP 64 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccchhhcccccc-------ccCCCCCCCcccccccc---------CccccccCCC----------CCCCC
Confidence 7899999999999999987632 33444444443221100 0000000000 00000
Q ss_pred CCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 236 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 236 ~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
.......+++|| |.||+..+|+++|+++|++||.|..|+|...+ +|+ |||+|.+.++|.+||+.|||..|.|
T Consensus 65 ~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 65 GPQRSVEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp -CCCCC-CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCEEE--EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 111123467788 89999999999999999999999999997653 355 9999999999999999999999999
Q ss_pred CceeEEEEEEeeCCcc
Q 013150 311 GGFCKLHISYSRHTDL 326 (448)
Q Consensus 311 ~~~~~i~v~~ak~~~~ 326 (448)
+ .|+|.|++.+..
T Consensus 142 ~---~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 Q---TIQVDWCFVKGP 154 (165)
T ss_dssp E---ECEEEESEECC-
T ss_pred E---EEEEEEecCCCC
Confidence 8 999999987653
No 190
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=120.41 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC--CCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~--g~~~~~i~v 318 (448)
.++++|| |.||+.++|+++|+++|++||.|.+|++..++ |+ |||+|.+.++|++|++.|||..|. |+ .|+|
T Consensus 15 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-g~-afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V 87 (97)
T 1why_A 15 NPTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-SF-AYIQYESLDAAQAACAKMRGFPLGGPDR---RLRV 87 (97)
T ss_dssp CCCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-CC-EEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-CE-EEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEE
Confidence 3467788 89999999999999999999999999998764 65 999999999999999999999999 77 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
+|++.+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998753
No 191
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=124.72 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=66.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcC-CeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhc-CCccCCCceeE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCK 315 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG-~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~ln-g~~l~g~~~~~ 315 (448)
+++|| |+|||.++|+++|+++|++|| .|.+|+++++ .+|+ |||+|.+.++|++|++.|+ +..+.|+ +
T Consensus 1 S~~i~--v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~-aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~ 74 (91)
T 2lxi_A 1 SNIVM--LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGF-AFVEFSHLQDATRWMEANQHSLNILGQ---K 74 (91)
T ss_dssp CCEEE--EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSE-EEEECSSHHHHHHHHHTTTTEEEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHhcCCCeEECCE---E
Confidence 35677 999999999999999999999 8999998653 2465 9999999999999999885 5678888 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+||+++.
T Consensus 75 i~V~~a~~~~ 84 (91)
T 2lxi_A 75 VSMHYSDPKP 84 (91)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 192
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=125.08 Aligned_cols=78 Identities=12% Similarity=0.241 Sum_probs=68.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
..+++|||+|||+++||+||+++|+.| .|.+|+|. .++++|||||+|.+.++|++|| .++ +..|+||.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~----~~~~~gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRN----RMLMIQRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTT----TEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcC----CCeECCeEEEE
Confidence 346899999999999999999999999 88899984 3678999999999999999999 566 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
..+..++
T Consensus 88 ~~a~~~~ 94 (109)
T 2dnn_A 88 SPATERQ 94 (109)
T ss_dssp EECCHHH
T ss_pred EECCccc
Confidence 8876654
No 193
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.6e-16 Score=120.76 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHH----HHHhhcCCeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~----~~F~~fG~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..++|| |+||+.++++++|+ ++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 8 ~~~~l~--V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~ 81 (96)
T 2dgx_A 8 NGADVQ--VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLK-AVVQMENLQDAIGAVNSLHRYKIGSK---K 81 (96)
T ss_dssp SCEEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCC-EEEEESSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 356777 89999999999999 999999999999997543 566 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+||+...
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 194
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=120.44 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
...++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 86 (103)
T 2cq3_A 13 STPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIE 86 (103)
T ss_dssp CCCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 4567888 89999999999999999999999999997653 455 99999999999999999999999998 999
Q ss_pred EEEeeCCcc
Q 013150 318 ISYSRHTDL 326 (448)
Q Consensus 318 v~~ak~~~~ 326 (448)
|+|++.+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999987653
No 195
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=119.16 Aligned_cols=77 Identities=10% Similarity=0.264 Sum_probs=67.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |+||+.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .|
T Consensus 5 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 78 (87)
T 3bs9_A 5 SHFHVF--VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QI 78 (87)
T ss_dssp -CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CceEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---EE
Confidence 356777 89999999999999999999999999997653 344 99999999999999999999999998 99
Q ss_pred EEEEeeCC
Q 013150 317 HISYSRHT 324 (448)
Q Consensus 317 ~v~~ak~~ 324 (448)
+|+|++.+
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999764
No 196
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=118.71 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
..++|| |.||+.++|+++|+++|++||.|.++++. +|+ |||+|.+.++|++|++.|||..+.|+ .|+|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLF--IGNLPREATEQEIRSLFEQYGKVLECDII---KNY-GFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEAS 77 (90)
T ss_dssp CCEEEE--EESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECS
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHhcCCccCCc---EEEEEEC
Confidence 467788 89999999999999999999999999998 365 99999999999999999999999999 9999998
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+.+.
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 197
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=116.51 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=65.2
Q ss_pred CCcE-EEEEEeCCCccCCHHH----HHHHHhhc-CCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNV-LLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~-l~v~v~nl~~~vt~~~----L~~~F~~f-G~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
++.+ |+ |.||++.+++++ |+++|++| |.|++|. .|+ |||+|.+.++|++|++.|||..++|+ +
T Consensus 7 p~~T~lY--V~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~-AfV~F~~~esA~~A~~~l~G~~l~gr---~ 75 (96)
T 2diu_A 7 GCHTLLY--VYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCS-AILRFINQDSAERAQKRMENEDVFGN---R 75 (96)
T ss_dssp CSSEEEE--EESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTC-EEEEESSHHHHHHHHHHHTTCCSSSS---C
T ss_pred CcceEEE--EeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCE-EEEEECCHHHHHHHHHHhcCCccCCc---e
Confidence 3555 55 999999999988 66899999 5999982 265 99999999999999999999999999 9
Q ss_pred EEEEEeeCCccc
Q 013150 316 LHISYSRHTDLS 327 (448)
Q Consensus 316 i~v~~ak~~~~~ 327 (448)
|+|+||+.++-.
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999987643
No 198
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=1.5e-16 Score=119.36 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
+|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|++ ++ +..++|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~----~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH----FHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS----CCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC----CCEECCEEEEEEeC
Confidence 48999999999999999999999999999984 45678999999999999999998 66 67899999999874
No 199
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=125.34 Aligned_cols=78 Identities=9% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCcEEEEEEeCCCcc-CCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC--CccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~-vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng--~~l~g~~~~~i~ 317 (448)
.++++|| |+||+.+ +|+++|+++|++||.|.+|++++.+ |+ |||+|.+.++|++|++.||+ ..|.|+ +|+
T Consensus 23 ~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~ 95 (112)
T 1x4f_A 23 ELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-SQ-AFIEMETREDAMAMVDHCLKKALWFQGR---CVK 95 (112)
T ss_dssp CCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHHHSCCCSSSS---CCE
T ss_pred CCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 4578888 8999998 9999999999999999999998765 65 99999999999999999875 458998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+||+...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997654
No 200
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=120.95 Aligned_cols=79 Identities=14% Similarity=0.410 Sum_probs=71.3
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.|||.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 10 ~~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 1x5s_A 10 SDEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---Q 83 (102)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---C
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3467888 89999999999999999999999999996642 455 99999999999999999999999999 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 84 l~v~~a~~~~ 93 (102)
T 1x5s_A 84 IRVDQAGKSS 93 (102)
T ss_dssp CEEEEEECCC
T ss_pred EEEEECCCCC
Confidence 9999998765
No 201
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=118.33 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=67.2
Q ss_pred CCCCccE-EEEcCCCCCCCHHHH----HHhhcCC-CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 13 TQPPSKV-LHLRNLPWECTEEEL----IELGKPF-GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 13 ~~~~s~~-l~V~nLp~~~te~~L----~~~F~~f-G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
..+|+.| |||+|||.++++++| +++|++| |+|.+| + .|+|||+|.+.++|++|++.|+ +..+.|
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t---gG~AfV~F~~~esA~~A~~~l~----G~~l~g 73 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T---GCSAILRFINQDSAERAQKRME----NEDVFG 73 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C---TTCEEEEESSHHHHHHHHHHHT----TCCSSS
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e---cCEEEEEECCHHHHHHHHHHhc----CCccCC
Confidence 4567888 999999999999984 5899999 599887 2 3999999999999999999999 679999
Q ss_pred cEEEEeeccccc
Q 013150 87 KTVYLQYSNRQE 98 (448)
Q Consensus 87 ~~i~v~~s~~~~ 98 (448)
|+|+|+|++.+.
T Consensus 74 r~i~v~~A~~~s 85 (96)
T 2diu_A 74 NRIIVSFTPKNR 85 (96)
T ss_dssp SCCEEESSCCSC
T ss_pred ceEEEEecCCCc
Confidence 999999997754
No 202
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=2.4e-15 Score=122.64 Aligned_cols=80 Identities=10% Similarity=0.252 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.||+..+|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 86 (115)
T 2dgo_A 13 SNHFHVF--VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---Q 86 (115)
T ss_dssp TTCEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---E
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3467777 89999999999999999999999999997653 354 99999999999999999999999998 9
Q ss_pred EEEEEeeCCcc
Q 013150 316 LHISYSRHTDL 326 (448)
Q Consensus 316 i~v~~ak~~~~ 326 (448)
|+|+|++.+..
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987653
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=122.41 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
...++|| |.||+.++|+++|+++|++||.|++|++.... +|+ |||+|.+.++|++|++.|||..|.|+ .|+|
T Consensus 20 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 93 (109)
T 1x4a_A 20 NNDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRV 93 (109)
T ss_dssp CCSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEE
Confidence 4567888 89999999999999999999999999995432 466 99999999999999999999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
+|++...
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9987754
No 204
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8.4e-16 Score=121.07 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=71.1
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
+++|| |+||+.++++++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .|+
T Consensus 2 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 75 (96)
T 2x1f_A 2 SRVVY--LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY-AFIEFRDLESSASAVRNLNGYQLGSR---FLK 75 (96)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CcEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 56788 89999999999999999999999999996543 465 99999999999999999999999998 999
Q ss_pred EEEeeCCccc
Q 013150 318 ISYSRHTDLS 327 (448)
Q Consensus 318 v~~ak~~~~~ 327 (448)
|+|++.+...
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999887543
No 205
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=120.55 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |.|||.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 80 (99)
T 1whw_A 7 GSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---ML 80 (99)
T ss_dssp SCEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 467788 89999999999999999999999999996543 465 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 81 ~V~~a~~~~ 89 (99)
T 1whw_A 81 HVLPSTIKK 89 (99)
T ss_dssp EEEECCCCS
T ss_pred EEEEcCCCc
Confidence 999998765
No 206
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-16 Score=131.48 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEE-Ee---ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNT-KC---NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v-~i---~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
......++|||+|||.++||+||+++|+.||.|.++ .+ .+++++|||||+|.+.++|++||+ ++ +..|+|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~----g~~~~gr 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH----KQYMGNR 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC----SBCSTTS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC----CCeECCc
Confidence 345567899999999999999999999999999763 33 356779999999999999999999 77 6789999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|.++..++.
T Consensus 95 ~i~V~~a~~~~~ 106 (124)
T 1wel_A 95 FIQVHPITKKGM 106 (124)
T ss_dssp CBEEEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999999887653
No 207
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=128.17 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=72.9
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCc---eEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGK---VVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~---I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
......++|||+|||+++|++||+++|+.||. |.+|+|.. ++++|||||+|.+.++|++||+ ++ +..++
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~----~~~~~ 80 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KH----RMYMG 80 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TT----TCCSS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hC----cceeC
Confidence 34557899999999999999999999999998 88888843 6789999999999999999999 77 56899
Q ss_pred CcEEEEeecccccc
Q 013150 86 GKTVYLQYSNRQEI 99 (448)
Q Consensus 86 g~~i~v~~s~~~~~ 99 (448)
|+.|.|.++..++.
T Consensus 81 gr~i~V~~a~~~~~ 94 (107)
T 2lmi_A 81 QRYVEVYEINNEDV 94 (107)
T ss_dssp SSCCCCEECCHHHH
T ss_pred CeEEEEEECCHHHH
Confidence 99999999877653
No 208
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=121.04 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=69.4
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCC
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~ 324 (448)
+|| |+||+.++|+++|+++|++||.|.++++..+++|+ |||+|.+.++|++|++.|||..+.|+ .|+|+|++..
T Consensus 2 ~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVY--VGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGF-AFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGM 75 (101)
T ss_dssp EEE--EECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSE-EEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSC
T ss_pred EEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCE-EEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCC
Confidence 466 89999999999999999999999999998775576 99999999999999999999999999 9999999876
Q ss_pred c
Q 013150 325 D 325 (448)
Q Consensus 325 ~ 325 (448)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 209
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=5.7e-16 Score=126.38 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEec-cCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCeEEE
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 191 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~-~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~~l~ 191 (448)
..|+|+||| ..+++++|+++|++||.|.+|.+.. +..+++|||+|.+.++|.+|++.|||.. +.|+.|+
T Consensus 9 ~~l~V~nlp-~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~---------~~g~~l~ 78 (115)
T 3lqv_A 9 RILYIRNLP-YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFN---------VSNRYLV 78 (115)
T ss_dssp SEEEEESCC-TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCB---------SSSCBCE
T ss_pred CEEEEeCCC-CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCE---------ECCeEEE
Confidence 356777997 8999999999999999999998876 4456899999999999999999999998 7799999
Q ss_pred EEecCCCcccccccccCCcCCCCCCCCCCCCccCccCCccccCCCCCCCCCCcEEEEEEeCCCccCCHHHHHHHHhhcCC
Q 013150 192 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 271 (448)
Q Consensus 192 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~ 271 (448)
|.|+..... ..+++...++++|.++|++||.
T Consensus 79 v~~a~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 79 VLYYNANRA-------------------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEECCHHHH-------------------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEecCChh-------------------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 999875421 1356678899999999999985
No 210
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.1e-15 Score=116.92 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=68.0
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
.+|| |+|||.++++++|+++|++||.|.++++..+. +|+ |||+|.+.++|++|++.|||..+.|+ .|+|
T Consensus 2 ~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v 75 (83)
T 3md1_A 2 FNLF--VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRI 75 (83)
T ss_dssp EEEE--EECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred eEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccce-EEEEECCHHHHHHHHHHhcCCeeCCc---EEEE
Confidence 4566 99999999999999999999999999997552 354 99999999999999999999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
+|++.++
T Consensus 76 ~~a~~~~ 82 (83)
T 3md1_A 76 NWAAKLE 82 (83)
T ss_dssp EECCCCC
T ss_pred EecCcCC
Confidence 9998753
No 211
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=126.76 Aligned_cols=82 Identities=26% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCCcEEEEEEeCCCccCCHHHHH----HHHhhcCCeeEEEEEc--cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 241 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~----~~F~~fG~I~~v~i~~--~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
.++++|| |+||+..+++++|+ ++|++||.|++|.+.. +.+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 27 ~p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~-aFV~F~~~~~A~~Ai~~lng~~l~gr--- 100 (127)
T 2a3j_A 27 EPSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGK-AYIVFATQESAQAFVEAFQGYPFQGN--- 100 (127)
T ss_dssp SCCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCC-EEEEESSHHHHHHHHHHSTTCCCTTS---
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCE-EEEEECCHHHHHHHHHHHCCCEeCCC---
Confidence 3477888 89999999999865 7999999999998854 34576 99999999999999999999999999
Q ss_pred EEEEEEeeCCcccc
Q 013150 315 KLHISYSRHTDLSI 328 (448)
Q Consensus 315 ~i~v~~ak~~~~~~ 328 (448)
+|+|+||+.+....
T Consensus 101 ~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 101 PLVITFSETPQSQV 114 (127)
T ss_dssp CCEEEECCCCCHHH
T ss_pred EEEEEEccCcchhc
Confidence 99999998875443
No 212
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=121.09 Aligned_cols=75 Identities=15% Similarity=0.328 Sum_probs=65.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCC--eeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCC----ccCCC
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIYDG 311 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~--I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~----~l~g~ 311 (448)
-.+|| |+||+.++|+++|+++|++||. |.+|++.+++ +|| |||+|.+.++|++|++.|||. .|.|+
T Consensus 9 m~tlf--V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTII--LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEE--EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 46688 9999999999999999999995 6788886542 566 999999999999999999997 48898
Q ss_pred ceeEEEEEEeeC
Q 013150 312 GFCKLHISYSRH 323 (448)
Q Consensus 312 ~~~~i~v~~ak~ 323 (448)
+|+|+|||.
T Consensus 86 ---~i~V~~Aks 94 (95)
T 2lkz_A 86 ---TIGVDFAKS 94 (95)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEEccC
Confidence 999999975
No 213
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=120.30 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
...++|| |+|||..+|+++|+++|++||.|.+|++.+.+ |+ |||+|.+.++|++|++.|||..|.|+ +|+|+|
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GF-GFIRLETRTLAEIAKVELDNMPLRGK---QLRVRF 85 (99)
T ss_dssp CCTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TE-EEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEE
Confidence 4567888 89999999999999999999999999998765 65 99999999999999999999999998 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97754
No 214
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.4e-16 Score=120.62 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=67.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
..++++|||+|||.++||++|+++|++||.|.+|++... +||||||+|.+.++|++|+.. ...+.|+.|.|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~------~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE------DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC------EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC------CceeCCEEEEEEe
Confidence 357899999999999999999999999999999998643 799999999999999865332 4577999999999
Q ss_pred cccccc
Q 013150 94 SNRQEI 99 (448)
Q Consensus 94 s~~~~~ 99 (448)
+..+..
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 877653
No 215
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.7e-16 Score=122.13 Aligned_cols=80 Identities=18% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |.||+.++|+++|+++|++||.|++|++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 10 ~~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 2cqb_A 10 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 83 (102)
T ss_dssp CCCSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence 3567888 8999999999999999999999999999654 2465 99999999999999999999999998 9
Q ss_pred EEEEEeeCCcc
Q 013150 316 LHISYSRHTDL 326 (448)
Q Consensus 316 i~v~~ak~~~~ 326 (448)
|+|+|++....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
No 216
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.62 E-value=5e-16 Score=128.51 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=69.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
+++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++|| .++ +..++|+.|.|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~----g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD----ETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT----TCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC----CCeECCeEEEEE
Confidence 6899999999999999999999999999999984 4677999999999999999999 787 678999999999
Q ss_pred ecccc
Q 013150 93 YSNRQ 97 (448)
Q Consensus 93 ~s~~~ 97 (448)
+++..
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98754
No 217
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=1.8e-16 Score=133.04 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|.+|++. +++++|||||+|.+.++|++||+.++ +..+.|+.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~----g~~i~g~~ 118 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD----GAVLDGRE 118 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT----TCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC----CCEECCEE
Confidence 34457899999999999999999999999999999994 45679999999999999999999998 56799999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.|++...
T Consensus 119 l~V~~a~~~~ 128 (135)
T 2lea_A 119 LRVQMARYGR 128 (135)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999987654
No 218
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=120.79 Aligned_cols=79 Identities=19% Similarity=0.391 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC------CCeEEEEEcCCHHHHHHHHHHh-cCCccCCCce
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGF 313 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~------~g~~afV~f~~~e~A~~Ai~~l-ng~~l~g~~~ 313 (448)
..+++|| |.||+.++|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|++|++.| ||..|.|+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~~g~-- 87 (107)
T 2cph_A 13 QTTSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR-- 87 (107)
T ss_dssp SCCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC--
T ss_pred CCCCEEE--EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCce-EEEEECCHHHHHHHHHHhccCCeECCC--
Confidence 3567788 89999999999999999999999999997652 565 999999999999999999 99999999
Q ss_pred eEEEEEEeeCCc
Q 013150 314 CKLHISYSRHTD 325 (448)
Q Consensus 314 ~~i~v~~ak~~~ 325 (448)
.|+|+|++.+.
T Consensus 88 -~l~v~~a~~~~ 98 (107)
T 2cph_A 88 -RLVLEWADSEV 98 (107)
T ss_dssp -BCEEEECCCCC
T ss_pred -EEEEEeCCCCC
Confidence 99999998764
No 219
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=118.40 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=70.4
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
++++|| |.||+.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (95)
T 2dnz_A 4 GSSGLY--VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY-GFITFSDSECARRALEQLNGFELAGR---PM 77 (95)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence 467788 89999999999999999999999999997653 455 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987654
No 220
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=120.61 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 86 (105)
T 1x5u_A 13 NQDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---P 86 (105)
T ss_dssp CTTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---B
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcE-EEEEECCHHHHHHHHHHhCCCeECCe---E
Confidence 4567888 89999999999999999999999999996543 455 99999999999999999999999999 9
Q ss_pred EEEEEeeCCcc
Q 013150 316 LHISYSRHTDL 326 (448)
Q Consensus 316 i~v~~ak~~~~ 326 (448)
|+|+|++.+..
T Consensus 87 l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 IRVNKASAHNK 97 (105)
T ss_dssp CEEEETTTTSC
T ss_pred EEEEECCCCCc
Confidence 99999987653
No 221
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-16 Score=118.77 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
++|||+|||.++|+++|+++|++||.|.++++.. ++++|||||+|.+.++|++|++.++ ..++|+.|.|++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-----~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-----HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-----CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-----CccCCEEEEEEe
Confidence 4799999999999999999999999999999843 5679999999999999999999886 478999999987
Q ss_pred c
Q 013150 94 S 94 (448)
Q Consensus 94 s 94 (448)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 5
No 222
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=3e-15 Score=119.92 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..+++|| |+||+.++|+++|+++|++||.|.+|++..++ +| +|||+|.+.++|++|++.|||..+.|+..+.|
T Consensus 13 ~~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG-CAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEE-EEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCc-EEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3477888 89999999999999999999999999997653 34 49999999999999999999999998111299
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999998765
No 223
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=9.1e-17 Score=125.04 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
++|||+|||.++|+++|+++|++||+|.+|++. +++++|||||+|.+.+ |++|++.++ +..++|+.|.|++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~----g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD----NTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC----SSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC----CCEECCeEEEEEE
Confidence 589999999999999999999999999999994 3567999999999999 999999998 5689999999999
Q ss_pred ccccc
Q 013150 94 SNRQE 98 (448)
Q Consensus 94 s~~~~ 98 (448)
+....
T Consensus 77 a~~~~ 81 (90)
T 2ki2_A 77 ANPKK 81 (90)
T ss_dssp C----
T ss_pred cCCCC
Confidence 87654
No 224
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=116.81 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=68.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHh-cCCccCCCceeEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHIS 319 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~l-ng~~l~g~~~~~i~v~ 319 (448)
..+++|| |+||+.++|+++|+++|++||.|.++++.+.+ |+ |||+|.+.++|.+|++.| ||..+.|+ .|+|+
T Consensus 10 ~~~~~l~--V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~-afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~ 82 (85)
T 2ytc_A 10 KTITTLY--VGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QC-AFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVK 82 (85)
T ss_dssp SSCCCEE--EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHTTTTTCEETTE---ECCEE
T ss_pred CCccEEE--EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CE-EEEEECCHHHHHHHHHHhcCCeeECCC---EEEEE
Confidence 3467788 89999999999999999999999999998865 65 999999999999999999 99999998 99999
Q ss_pred Eee
Q 013150 320 YSR 322 (448)
Q Consensus 320 ~ak 322 (448)
|||
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 225
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=122.95 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCcc---CCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l---~g~~~~~i~ 317 (448)
.++++|||.++||+.++|+++|+++|++||.|.+|.+..+ +|| |||+|.+.++|++|++.|||..+ .++ ..+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITLY 99 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSC-EEEEESSHHHHHHHHHHTTTCEEECTTSC-EEECE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCEEccccCC-CcEEE
Confidence 3477888333779999999999999999999999988765 476 99999999999999999999977 222 24999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|.|++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99987543
No 226
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=122.65 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
...++|| |+||+.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 27 ~~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 100 (109)
T 2err_A 27 SQPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIE 100 (109)
T ss_dssp TCCCEEE--EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTE-EEEECCCSHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCEEE--EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence 3567888 89999999999999999999999999996543 465 99999999999999999999999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++.+.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998753
No 227
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=123.37 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=69.5
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
+++|| |.||+.++|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|++|++.|||..|.|+ .|+|+|++
T Consensus 10 ~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 82 (111)
T 1whx_A 10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-IT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP 82 (111)
T ss_dssp EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-SC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECC
Confidence 56777 89999999999999999999999999987644 65 99999999999999999999999999 99999998
Q ss_pred CCc
Q 013150 323 HTD 325 (448)
Q Consensus 323 ~~~ 325 (448)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 754
No 228
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=120.19 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=69.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
...++|| |.|||.++++++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 14 ~~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (95)
T 2ywk_A 14 EADRTVF--VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSF-GFVCFKHPESVSYAIALLNGIRLYGR---PI 87 (95)
T ss_dssp TGGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSTHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCC---EE
Confidence 3467888 89999999999999999999999999997654 344 99999999999999999999999998 99
Q ss_pred EEEEeeC
Q 013150 317 HISYSRH 323 (448)
Q Consensus 317 ~v~~ak~ 323 (448)
+|+|++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999864
No 229
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=5.4e-16 Score=127.76 Aligned_cols=81 Identities=21% Similarity=0.390 Sum_probs=69.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceE--EEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCc
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVV--NTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGK 87 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~--~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~ 87 (448)
....+++|||+|||+++||+||+++|++| .|. +|+|. .+++||||||+|.+.++|++||+. + +..|+|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~----~~~l~gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-H----KERIGHR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-T----TCCBTTB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-C----CCEECCE
Confidence 34567899999999999999999999999 565 88884 367899999999999999999986 3 4589999
Q ss_pred EEEEeecccccc
Q 013150 88 TVYLQYSNRQEI 99 (448)
Q Consensus 88 ~i~v~~s~~~~~ 99 (448)
.|.|..+..++.
T Consensus 112 ~I~V~~a~~~e~ 123 (126)
T 2hgm_A 112 YIEVFKSSQEEV 123 (126)
T ss_dssp CCCCEEECHHHH
T ss_pred EEEEEECCHHHh
Confidence 999998876654
No 230
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=119.46 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.++++|| |.|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .
T Consensus 13 ~~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 86 (95)
T 2cqc_A 13 DPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---R 86 (95)
T ss_dssp CGGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4467788 89999999999999999999999999997543 344 99999999999999999999999998 9
Q ss_pred EEEEEeeC
Q 013150 316 LHISYSRH 323 (448)
Q Consensus 316 i~v~~ak~ 323 (448)
|+|+||+.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999874
No 231
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=119.02 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=68.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
...+++|||+|||.++|+++|+++|++||.|.+|.+.....+ ||||+|.+.++|++||+ ++ +..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~----g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QS----QHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CS----CCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cC----CeEECCEEEEEEE
Confidence 446789999999999999999999999999999843222223 99999999999999999 87 6799999999998
Q ss_pred cccccc
Q 013150 94 SNRQEI 99 (448)
Q Consensus 94 s~~~~~ 99 (448)
+..+..
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 866543
No 232
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=118.11 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
...++|| |.||+.++|+++|+++|++||.|.++++..++ +| +|||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 15 ~~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 88 (100)
T 2do4_A 15 LEKHKLF--ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG-LAYVEYENESQASQAVMKMDGMTIKEN---II 88 (100)
T ss_dssp CCCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEE-EEEEEESSHHHHHHHHHHHTTEESSSC---EE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEe-EEEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 3467788 89999999999999999999999999997654 24 499999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998754
No 233
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=3.1e-15 Score=121.94 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=70.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.||+.++|+++|+++|++||.|++|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 23 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 96 (115)
T 2cpz_A 23 PEGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---R 96 (115)
T ss_dssp STTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCcc-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 4567788 89999999999999999999999999997654 244 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 97 l~V~~a~~~~ 106 (115)
T 2cpz_A 97 LKVQLKRSKN 106 (115)
T ss_dssp CEEECCCCSC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 234
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=118.45 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |.||+.++|+++|+++|++||.|.+|+++.+ .+|+ |||+|.+.++|++|++ |||..|.|+ .|
T Consensus 9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~l 81 (99)
T 2dgs_A 9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF-GFITFEDEQSVDQAVN-MHFHDIMGK---KV 81 (99)
T ss_dssp SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSE-EEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCce-EEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence 467888 8999999999999999999999999999654 2465 9999999999999999 999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 82 ~V~~a~~~~ 90 (99)
T 2dgs_A 82 EVKRAEPRD 90 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999998764
No 235
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.8e-15 Score=118.31 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.8
Q ss_pred CCCcEEEEEEeCCCc-cCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 241 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~-~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
+.+++|| |+||+. ++++++|+++|++||.|.++++. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+
T Consensus 20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIEXESQEMNFGK---KLILE 90 (97)
T ss_dssp CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHTTSEETTE---ECEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 4578888 899998 99999999999999999999984 465 99999999999999999999999998 99999
Q ss_pred EeeCC
Q 013150 320 YSRHT 324 (448)
Q Consensus 320 ~ak~~ 324 (448)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 236
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=121.16 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
..++|| |+||+..+|+++|+++|++||.|.+|++..++ |+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 24 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GY-SFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWG 96 (109)
T ss_dssp SCCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CE-EEEEECCHHHHHHHHHHcCCCEECCc---EEEEEec
Confidence 467788 89999999999999999999999999998874 65 99999999999999999999999998 9999999
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+.+.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 237
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.4e-15 Score=132.29 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++++|||+|||.++|+++|+++|++||.|.+|.|. +++++|||||+|.+.++|++||+.++ +..|.|+.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN----GAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT----TCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC----CCEECCEEE
Confidence 4567889999999999999999999999999999995 34568999999999999999999998 678999999
Q ss_pred EEeecccccc
Q 013150 90 YLQYSNRQEI 99 (448)
Q Consensus 90 ~v~~s~~~~~ 99 (448)
.|.|+..+..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999876543
No 238
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=128.68 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCce----EEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKV----VNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I----~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
...+++|||+|||+++||+||+++|++||.| .+|+|. +++++|||||+|.+.++|++||+. + +..|+|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~----~~~l~g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-H----KDLLGK 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-T----TEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-C----CCeeCC
Confidence 4567899999999999999999999999975 567774 467899999999999999999996 5 568999
Q ss_pred cEEEEeecccccc
Q 013150 87 KTVYLQYSNRQEI 99 (448)
Q Consensus 87 ~~i~v~~s~~~~~ 99 (448)
+.|.|..+..++.
T Consensus 95 R~i~V~~a~~~e~ 107 (123)
T 2dha_A 95 RYIELFRSTAAEV 107 (123)
T ss_dssp CEECCEEECHHHH
T ss_pred eEEEEEECCHHHH
Confidence 9999988876654
No 239
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-15 Score=121.06 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
.+++|| |+||+.++|+++|+++|++||.|.++++.+.+ |+ |||+|.+.++|.+|++.|||..+.|+ .|+|+|+
T Consensus 26 ~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a 98 (101)
T 2la4_A 26 RVTTAY--IGNIPHFATEADLIPLFQNFGFILDFKHYPEK-GC-CFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWG 98 (101)
T ss_dssp SCCEEE--EESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBC
T ss_pred CCCEEE--EcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEec
Confidence 467888 89999999999999999999999999998554 65 99999999999999999999999998 9999998
Q ss_pred eCC
Q 013150 322 RHT 324 (448)
Q Consensus 322 k~~ 324 (448)
+.+
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 240
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-15 Score=120.03 Aligned_cols=78 Identities=17% Similarity=0.398 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..++|| |+||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 6 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~ 79 (116)
T 2fy1_A 6 HPGKLF--IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGF-AFITFENPADAKNAAKDMNGKSLHGK---AIK 79 (116)
T ss_dssp SCCEEE--EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCE-EEEECSSHHHHHHHHHHCSSCBCSSS---BCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 357788 89999999999999999999999999997654 455 99999999999999999999999999 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++...
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 99998764
No 241
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=119.73 Aligned_cols=79 Identities=15% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc---CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~---~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
...++|| |.||+.++|+++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 86 (103)
T 2d9p_A 13 YQVVNLY--VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEATKAVTEMNGRIVATK---PLY 86 (103)
T ss_dssp SSCCCEE--EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence 3467788 8999999999999999999999999999754 2354 99999999999999999999999999 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++.+.
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99998765
No 242
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=119.29 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=70.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEE-EEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v-~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
++++|| |.|||.++|+++|+++|++||.|.++ ++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 77 (96)
T 1x5t_A 4 GSSGIF--IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---P 77 (96)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 467788 89999999999999999999999999 88664 2465 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 78 l~v~~a~~~~ 87 (96)
T 1x5t_A 78 ITVSYAFKKD 87 (96)
T ss_dssp CEEEESCCCC
T ss_pred EEEEEecccC
Confidence 9999998765
No 243
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=120.10 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=70.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 86 (103)
T 2cq0_A 13 DDNATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---I 86 (103)
T ss_dssp SSSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 3567888 89999999999999999999999999997653 344 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999997764
No 244
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=129.72 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=73.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEe-ecCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVN--------TKC-NVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--------v~i-~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
...++++|||+|||.++|+++|+++|++||.|.+ +++ .+++++|||||+|.+.++|++||+.++ +..
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln----g~~ 116 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN----GYV 116 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT----TBE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC----CCE
Confidence 4668899999999999999999999999999865 333 468899999999999999999999998 678
Q ss_pred eeCcEEEEeeccccc
Q 013150 84 VRGKTVYLQYSNRQE 98 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~ 98 (448)
+.|+.|.|.|++...
T Consensus 117 ~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 117 LFGKPMVVQFARSAR 131 (143)
T ss_dssp ETTEECEEEECCCSC
T ss_pred eCCcEEEEEECCCCC
Confidence 999999999987643
No 245
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.5e-15 Score=122.44 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=68.2
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcC-CeeEEEEE-ccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG-~I~~v~i~-~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+.|| |+||+.++|+++|+++|++|| .|..+++. .+++|+ |||+|.+.++|++||+.|||..|.|+ .|+|++
T Consensus 28 ~~~l~--VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGf-aFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~ 101 (111)
T 2jvr_A 28 RYRIT--MKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERLNNIEFRGS---VITVER 101 (111)
T ss_dssp CEEEE--EECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCC-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 45666 999999999999999999999 99999985 445676 99999999999999999999999998 999999
Q ss_pred eeCC
Q 013150 321 SRHT 324 (448)
Q Consensus 321 ak~~ 324 (448)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 246
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=116.57 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=68.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
.+++|| |+||+.++|+++|+++|++||.|.++++.+ + +|||+|.+.++|++|++.|||..|.|+ .|+|+|+
T Consensus 9 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLH--VGNISPTCTNQELRAKFEEYGPVIECDIVK---D-YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLS 79 (92)
T ss_dssp SSEEEE--EESCCSSCCHHHHHHHHHTTSCCCEEEECS---S-EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEc
Confidence 467788 899999999999999999999999999874 4 499999999999999999999999998 9999999
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+.+.
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 247
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=123.55 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=65.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec-------CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV-------GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~-------~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
...+++|||+|||.++||++|+++|++||+|. +.+.. +++||||||+|.+.++|++||+.++ .++|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~------~~~G 77 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL------EEDG 77 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE------EETT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh------hcCC
Confidence 45689999999999999999999999999999 66632 5789999999999999999999986 5888
Q ss_pred cEEEEeecc
Q 013150 87 KTVYLQYSN 95 (448)
Q Consensus 87 ~~i~v~~s~ 95 (448)
+.+.+..+.
T Consensus 78 ~~~~~~~~~ 86 (114)
T 2dnl_A 78 KLYLCVSSP 86 (114)
T ss_dssp EEEEEECCS
T ss_pred cEEEeccCC
Confidence 888876543
No 248
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.1e-15 Score=117.68 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC---CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~---~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
.+++|| |.|||.++|+++|+++|++||.|.++++..+. +|+ |||+|.+.++|++|++.|||..+.|+ .|+|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v 80 (92)
T 2dgv_A 7 GACQIF--VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERACRMMNGMKLSGR---EIDV 80 (92)
T ss_dssp SCCEEE--ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEE-EEEEESSHHHHHHHHHHHTTCCBTTB---CCCC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 467788 89999999999999999999999999997632 354 99999999999999999999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
+|++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9997754
No 249
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=119.89 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC--------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~--------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
++++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~-- 78 (98)
T 2cpf_A 4 GSSGLF--IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH-- 78 (98)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccE-EEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence 367788 89999999999999999999999999996432 244 99999999999999999999999998
Q ss_pred eEEEEEEeeCCc
Q 013150 314 CKLHISYSRHTD 325 (448)
Q Consensus 314 ~~i~v~~ak~~~ 325 (448)
.|+|+|++...
T Consensus 79 -~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 -KLEVRISERAT 89 (98)
T ss_dssp -ECEEECSSCSS
T ss_pred -EEEEEEccCCC
Confidence 99999987754
No 250
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=117.95 Aligned_cols=76 Identities=17% Similarity=0.402 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE--------EEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCc
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHC 307 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~--------v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~ 307 (448)
...++|| |+||+.++|+++|+++|++||.|.+ +++..++ +|+ |||+|.+.++|++|++.|||..
T Consensus 11 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 11 SDNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CCCSEEE--EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEE-EEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeE-EEEEECCHHHHHHHHHHhCCCE
Confidence 4567788 8999999999999999999999999 8886643 355 9999999999999999999999
Q ss_pred cCCCceeEEEEEEee
Q 013150 308 IYDGGFCKLHISYSR 322 (448)
Q Consensus 308 l~g~~~~~i~v~~ak 322 (448)
+.|+ .|+|+||+
T Consensus 88 ~~g~---~l~V~~A~ 99 (99)
T 2la6_A 88 FSGN---PIKVSFAT 99 (99)
T ss_dssp SSSS---BCEEEECC
T ss_pred eCCc---EEEEEecC
Confidence 9999 99999985
No 251
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.2e-16 Score=132.61 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=68.2
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 12 YTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
.....+++|||+|||+++||+||+++|++|| |++|+|. .+++||||||+|.+.++|++|| .++ +..|+|+.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~----g~~l~gR~ 114 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKD----RANMQHRY 114 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCC----SCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhC----CCEECCEE
Confidence 3455678999999999999999999999999 6688884 3678999999999999999999 566 66899999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.++...+
T Consensus 115 i~V~~a~~~~ 124 (139)
T 2hgn_A 115 IELFLNSTTG 124 (139)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9998877654
No 252
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=115.71 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=68.7
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
.+++|| |+||+.++|+++|+++|++||.|.++++.+ ++ |||+|.+.++|++|++.|||..+.|+ .|+|+|+
T Consensus 8 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIF--VGNVSAACTSQELRSLFERRGRVIECDVVK---DY-AFVHMEKEADAKAAIAQLNGKEVKGK---RINVELS 78 (90)
T ss_dssp CSCCEE--EESCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---CE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 467788 899999999999999999999999999874 44 99999999999999999999999998 9999999
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 253
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=120.01 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 85 (103)
T 2dnm_A 12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGF-AFVRFHDRRDAQDAEAAMDGAELDGR---EL 85 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSC-EEEEESSSSHHHHHHHHHSSCCBTTB---CC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 467888 89999999999999999999999999996542 466 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998754
No 254
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=115.92 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=68.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc------CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~------~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.++|| |.||+.++|+++|+++|++||.|.++++..+ .+|+ |||+|.+.++|++|++.|||..+.|+ .|
T Consensus 4 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (88)
T 4a8x_A 4 PTKVH--IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQ---EI 77 (88)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcE-EEEEEecHHHHHHHHHHcCCCeECCe---EE
Confidence 56788 8999999999999999999999999998442 3465 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|++++...
T Consensus 78 ~v~~a~~~~ 86 (88)
T 4a8x_A 78 TATAVLAPW 86 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999997653
No 255
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.2e-15 Score=117.76 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=69.2
Q ss_pred CCCcEEEEEEeCCCc-cCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 241 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~-~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
.++++|| |+||+. .+|+++|+++|++||.|.++++. +|+ |||+|.+.++|++|++.|||..+.|+ .|+|+
T Consensus 8 ~~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIECESQEMNFGK---KLILE 78 (96)
T ss_dssp -CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTE-EEEEESCHHHHHHHHHHHTCSSCBTT---TBCEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCeeCCc---EEEEE
Confidence 3577888 899998 99999999999999999999985 365 99999999999999999999999999 99999
Q ss_pred EeeCCc
Q 013150 320 YSRHTD 325 (448)
Q Consensus 320 ~ak~~~ 325 (448)
|++...
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 998764
No 256
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.5e-15 Score=120.96 Aligned_cols=76 Identities=21% Similarity=0.494 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
..+++|| |+||+.++|+++|+++|++||.|.++++. +|+ |||+|.+.++|++|++.|||..+.|+ .|+|+|
T Consensus 29 ~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKIL---NGF-AFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVY 99 (108)
T ss_dssp CSCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEES
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 4567888 99999999999999999999999999998 465 99999999999999999999999998 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++...
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98764
No 257
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.6e-15 Score=117.09 Aligned_cols=72 Identities=21% Similarity=0.441 Sum_probs=66.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCC----C-------ceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPF----G-------KVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~f----G-------~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
..++++|||+|||.++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .++ +.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~~kg~afV~f~~~~~a~~A~-~l~----g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFD----GI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--SSSSEEEEEESSHHHHHHHG-GGT----TC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec--CCCcEEEEEcCCHHHHHHHH-hcC----CC
Confidence 3578999999999999999999999999 8 99999876 45999999999999999999 888 67
Q ss_pred eeeCcEEEEe
Q 013150 83 QVRGKTVYLQ 92 (448)
Q Consensus 83 ~~~g~~i~v~ 92 (448)
.++|+.|.|+
T Consensus 76 ~~~g~~l~V~ 85 (87)
T 2hzc_A 76 IFQGQSLKIR 85 (87)
T ss_dssp EETTEECEEE
T ss_pred EECCeEEEEe
Confidence 8999999986
No 258
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-15 Score=118.77 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |+||+.++|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 95 (106)
T 1p27_B 22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 95 (106)
T ss_dssp TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESCHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeE-EEEEECCHHHHHHHHHHhcCCEECCc---EE
Confidence 467788 89999999999999999999999999997543 354 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999997653
No 259
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=3.6e-16 Score=117.18 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=63.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec----CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEeec
Q 013150 19 VLHLRNLPWECTEEELIELGKPFGKVVNTKCNV----GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYS 94 (448)
Q Consensus 19 ~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~s 94 (448)
+|||+|||.++|+++|+++|++||.|.++.+.. ++++|||||+|.+.++|++|++. + +..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~----~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K----YHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S----SCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C----CCeECCEEEEEEEC
Confidence 599999999999999999999999999999843 56799999999999999999996 4 55799999988764
No 260
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=5.3e-15 Score=119.10 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=70.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |+||+..+|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 24 ~~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~i~g~---~ 97 (108)
T 2jrs_A 24 AGPMRLY--VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY-GFITFSDSECAKKALEQLNGFELAGR---P 97 (108)
T ss_dssp SSCEEEE--EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEE-EEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3467788 89999999999999999999999999996543 354 99999999999999999999999999 9
Q ss_pred EEEEEeeCC
Q 013150 316 LHISYSRHT 324 (448)
Q Consensus 316 i~v~~ak~~ 324 (448)
|+|+|++.+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999765
No 261
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=4.6e-15 Score=119.07 Aligned_cols=79 Identities=16% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCcc---CCCc
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI---YDGG 312 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l---~g~~ 312 (448)
...++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..+ .|+
T Consensus 11 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g~- 86 (106)
T 2dgp_A 11 HDAIKLF--IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC-AFLTYCERESALKAQSALHEQKTLPGMNR- 86 (106)
T ss_dssp TTCEEEE--EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSE-EEEEESSHHHHHHHHHHHTTTCCCTTCSS-
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhcCCcccCCCCc-
Confidence 3467788 89999999999999999999999999996642 465 99999999999999999999987 677
Q ss_pred eeEEEEEEeeCCc
Q 013150 313 FCKLHISYSRHTD 325 (448)
Q Consensus 313 ~~~i~v~~ak~~~ 325 (448)
.|+|+|++.+.
T Consensus 87 --~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 --PIQVKPADSES 97 (106)
T ss_dssp --CCEEEECCCCS
T ss_pred --eEEEEECCccc
Confidence 99999997754
No 262
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3e-15 Score=124.56 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.++++|| |.||+.++|+++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 44 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~lng~~i~g~---~ 117 (129)
T 2kxn_B 44 DPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---R 117 (129)
T ss_dssp CCSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCE-EEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4567788 8999999999999999999999999999754 2455 99999999999999999999999999 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999997754
No 263
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=4.1e-15 Score=120.25 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=70.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |+||+..+|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 24 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~ 97 (110)
T 1oo0_B 24 VEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---T 97 (110)
T ss_dssp TTBEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCc---E
Confidence 3467788 89999999999999999999999999996543 465 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999998754
No 264
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.9e-15 Score=121.95 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
...+++|| |+||+.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..|.|+
T Consensus 37 ~~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~--- 110 (118)
T 2khc_A 37 GPEGCNLF--IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF-GFVSFDNPDSAQVAIKAMNGFQVGTK--- 110 (118)
T ss_dssp CCCSEEEE--EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCE-EEEEEESSHHHHHHHHHCCCCEETTE---
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcE-EEEEECCHHHHHHHHHHcCCCEECCE---
Confidence 34567788 89999999999999999999999999996542 465 99999999999999999999999998
Q ss_pred EEEEEEee
Q 013150 315 KLHISYSR 322 (448)
Q Consensus 315 ~i~v~~ak 322 (448)
.|+|+|+|
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999986
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9e-15 Score=115.36 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=67.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEE-ccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~-~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+++|| |+||+.++|+++|+++|++||.|. ++++ ...+|+ |||+|.+.++|++|++.|||..|.|+ .|+|+|
T Consensus 18 ~~~~l~--V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~ 90 (97)
T 2e5j_A 18 LAADVY--VGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRR-AFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVAL 90 (97)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTE-EEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEE
T ss_pred CCCEEE--EeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 467788 899999999999999999999997 5554 344576 99999999999999999999999999 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++.+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97753
No 266
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=2e-15 Score=132.70 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=74.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
...++++|||+|||.++|+++|+++|++||.|++|.|.. ++++|||||+|.+.++|++||+.++ +..++|+.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ln----g~~l~Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK----GVPLDGRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHST----TCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhC----CCEECCEEE
Confidence 345678999999999999999999999999999999954 6679999999999999999999998 668999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|+|+....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999987654
No 267
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=118.24 Aligned_cols=78 Identities=12% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCee-EEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~-~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.+++|| |+||+.++|+++|+++|++||.|. ++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (99)
T 2div_A 8 MAASLW--MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGY-CFVEFADLATAEKCLHKINGKPLPGA---T 81 (99)
T ss_dssp SSSEEE--ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEE-EEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCE-EEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence 477888 999999999999999999999999 99997653 244 99999999999999999999999998 6
Q ss_pred ----EEEEEeeCCc
Q 013150 316 ----LHISYSRHTD 325 (448)
Q Consensus 316 ----i~v~~ak~~~ 325 (448)
|+|+||+...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999987653
No 268
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=122.09 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCcEEEEEEeCCCccCCHHHHH---HHHhhcCCeeEEEEEccCC--------CeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 242 ESNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKNG--------GLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~---~~F~~fG~I~~v~i~~~~~--------g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
..++|| |+|||.++++++|+ ++|++||.|.+|++..++. |+ |||+|.+.++|++|++.|||..|.|
T Consensus 14 ~~~~l~--V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 14 QKNLVF--VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS-AYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CSSCEE--EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE-EEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE-EEEEECcHHHHHHHHHHhCCCEECC
Confidence 356788 89999999999999 9999999999999975432 55 9999999999999999999999999
Q ss_pred CceeEEEEEEeeCCc
Q 013150 311 GGFCKLHISYSRHTD 325 (448)
Q Consensus 311 ~~~~~i~v~~ak~~~ 325 (448)
+ +|+|+||+.+.
T Consensus 91 r---~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 R---TLKASLGTTKY 102 (111)
T ss_dssp E---EEEEESCCCCS
T ss_pred E---EEEEEeccccc
Confidence 8 99999997764
No 269
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.58 E-value=1.5e-15 Score=120.55 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=68.9
Q ss_pred CcEEEEEEeCCCc------cCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCC-
Q 013150 243 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD- 310 (448)
Q Consensus 243 ~~~l~v~v~nl~~------~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g- 310 (448)
+++|| |+|||. ++++++|+++|++||.|.+|+|..++ +|+ |||+|.+.++|++|++.|||..|.|
T Consensus 6 ~~~vf--V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIV--VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGF-LFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEE--EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEE--EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHhCCcccCCC
Confidence 67788 999999 99999999999999999999996433 466 9999999999999999999999999
Q ss_pred CceeEEEEEEeeCC
Q 013150 311 GGFCKLHISYSRHT 324 (448)
Q Consensus 311 ~~~~~i~v~~ak~~ 324 (448)
+ .|+|+++++.
T Consensus 83 r---~l~V~~a~~~ 93 (100)
T 3ns6_A 83 H---RLFLYTMKDV 93 (100)
T ss_dssp C---BCEEEESHHH
T ss_pred e---EEEEEECchh
Confidence 8 9999999764
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=3.6e-15 Score=117.63 Aligned_cols=80 Identities=25% Similarity=0.454 Sum_probs=71.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHH----HHHhhcCCeeEEEEEc--cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 241 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~----~~F~~fG~I~~v~i~~--~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
.++++|| |+||+.++++++|+ ++|++||.|.+|++.+ ..+|+ |||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (97)
T 1nu4_A 6 RPNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--- 79 (97)
T ss_dssp CCCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcE-EEEEeCCHHHHHHHHHHhCCCEECCc---
Confidence 3577888 89999999999999 9999999999999864 23466 99999999999999999999999998
Q ss_pred EEEEEEeeCCcc
Q 013150 315 KLHISYSRHTDL 326 (448)
Q Consensus 315 ~i~v~~ak~~~~ 326 (448)
.|+|+|++.+..
T Consensus 80 ~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 PMRIQYAKTDSD 91 (97)
T ss_dssp ECEEEECSSCCT
T ss_pred EEEEEEccCCCc
Confidence 999999988653
No 271
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=8.7e-16 Score=122.42 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=70.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
..++++|||+|||.++|+++|+++|+.||.|.+|++.. ++++|||||+|.+.++|++|++ + +..++|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~----~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S----QINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--C----CCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--C----CCeECCEEEE
Confidence 34578999999999999999999999999999999954 5578999999999999999999 5 6789999999
Q ss_pred Eeeccccc
Q 013150 91 LQYSNRQE 98 (448)
Q Consensus 91 v~~s~~~~ 98 (448)
|.++..+.
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99876544
No 272
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=5.8e-15 Score=122.43 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=70.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 21 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 94 (126)
T 3ex7_B 21 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 94 (126)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSC-EEEEESSHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 467788 89999999999999999999999999996553 566 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999997654
No 273
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=1.1e-15 Score=140.01 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCC--ceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFG--KVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTV 89 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG--~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i 89 (448)
..++|||+|||.++||++|+++|++|| +|++|+|. ++++||||||+|.+.++|++||+.|+ +..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln----g~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP----KRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST----TSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC----CCeECCEEe
Confidence 457899999999999999999999999 99999994 45689999999999999999999998 668999999
Q ss_pred EEeeccccc
Q 013150 90 YLQYSNRQE 98 (448)
Q Consensus 90 ~v~~s~~~~ 98 (448)
.|.+++...
T Consensus 143 ~V~~a~~~~ 151 (229)
T 3q2s_C 143 VVTPVNKQF 151 (229)
T ss_dssp EEEECCHHH
T ss_pred EEEECCCCc
Confidence 999987654
No 274
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=118.02 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhc------CCccC
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIY 309 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~ln------g~~l~ 309 (448)
..+++|| |.||+.++|+++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|.+|++.|| |..|.
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccE-EEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3467788 8999999999999999999999999999644 2465 9999999999999999999 99999
Q ss_pred CCceeEEEEEEeeCCc
Q 013150 310 DGGFCKLHISYSRHTD 325 (448)
Q Consensus 310 g~~~~~i~v~~ak~~~ 325 (448)
|+ .|+|+|++.+.
T Consensus 90 g~---~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GR---QLKVDLAVTRD 102 (111)
T ss_dssp SC---EEEEECCCCCC
T ss_pred CE---EEEEEECCCCc
Confidence 99 99999998764
No 275
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=130.34 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEE--------EEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCC
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVN--------TKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEP 81 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~--------v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~ 81 (448)
..++++|||+|||.++|+++|+++|++||.|.+ |++. +++++|||||+|.+.++|++||+.++ +
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----g 79 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD----G 79 (116)
Confidence 357899999999999999999999999999998 7774 35679999999999999999999998 6
Q ss_pred ceeeCcEEEEeecccccc
Q 013150 82 AQVRGKTVYLQYSNRQEI 99 (448)
Q Consensus 82 ~~~~g~~i~v~~s~~~~~ 99 (448)
..+.|+.|.|.+++.+..
T Consensus 80 ~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRAD 97 (116)
Confidence 789999999999887653
No 276
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=1.5e-15 Score=152.08 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=70.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
+.++|| |+||+..+|+++|.++|++||.|+.|+|+..+ +|| |||+|.+.++|.+||+.|||..|.|+ .|
T Consensus 101 ~~~~lf--V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~i~gr---~i 174 (437)
T 3pgw_S 101 AFKTLF--VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGY-AFIEYEHERDMHSAYKHADGKKIDGR---RV 174 (437)
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccce-EEEeeccHHHHHHHHHHcCCCEECCE---EE
Confidence 457788 89999999999999999999999999996542 465 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
.|.|++...
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999998654
No 277
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=114.68 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEE-EEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~-i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+++|| |+||+.++|+++|+++|++||.|.+++ +..++....|||+|.+.++|.+|++.|||..|.|+ +|+|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQ--IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF---TLKVAY 88 (96)
T ss_dssp SCCCEE--EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCCEEE--EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 356788 899999999999999999999999995 66554332499999999999999999999999999 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++.+.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 278
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-14 Score=116.32 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCC---eEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g---~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..+++|| |.||+.++|+++|+++|++||.|++|++..++.| .+|||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 13 ~~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 87 (114)
T 2do0_A 13 RLGSTVF--VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR---PMH 87 (114)
T ss_dssp CCCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC---EEE
Confidence 4567888 8999999999999999999999999999765422 2499999999999999999999999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987643
No 279
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=3.9e-15 Score=122.38 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=70.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEe
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQ 92 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~ 92 (448)
...++++|||+|| ++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++||+.++ +..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~ln----g~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELN----GTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHT----TCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhC----CCEECCeEEEEE
Confidence 3457899999996 79999999999999999999986 679999999999999999999998 568999999999
Q ss_pred eccccc
Q 013150 93 YSNRQE 98 (448)
Q Consensus 93 ~s~~~~ 98 (448)
|+..+.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 987754
No 280
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=122.44 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=70.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |+||+.++|+++|+++|+.||.|++|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 40 ~~~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 113 (139)
T 1u6f_A 40 DVLRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---R 113 (139)
T ss_dssp TTTSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3467888 89999999999999999999999999996553 354 99999999999999999999999999 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++...
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999997754
No 281
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=118.40 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 240 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 240 ~~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
....++|| |.||+.++|+++|+++|++||.|.+|+|..++ +|+ |||+|.+.++|++|++.||+ .|.|+
T Consensus 14 ~~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~~~~-~~~g~--- 86 (116)
T 2cqd_A 14 DTTFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR--- 86 (116)
T ss_dssp SCSSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhCCC-cCCCE---
Confidence 34577888 89999999999999999999999999996543 465 99999999999999999999 88888
Q ss_pred EEEEEEeeCC
Q 013150 315 KLHISYSRHT 324 (448)
Q Consensus 315 ~i~v~~ak~~ 324 (448)
.|+|+|++..
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 9999998654
No 282
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=1.6e-14 Score=119.32 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..+++|| |+||+..+++++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 33 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 106 (124)
T 2kt5_A 33 ETGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PM 106 (124)
T ss_dssp SSCEEEE--EESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSE-EEEEESSHHHHHHHHHHHTTEESSSC---EE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 3467788 89999999999999999999999999997643 465 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+||+...
T Consensus 107 ~V~~a~~~~ 115 (124)
T 2kt5_A 107 DIQLVASQI 115 (124)
T ss_dssp EEEEECCTT
T ss_pred EEEEeCCCC
Confidence 999997754
No 283
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.7e-15 Score=117.75 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=63.3
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcC--CeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG--~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
+|| |+||+.++|+++|+++|++|| .|.++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .|+
T Consensus 3 ~l~--V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~ 76 (90)
T 3p5t_L 3 ALY--IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPV 76 (90)
T ss_dssp -CE--EESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEE-EEECC-CHHHHHHHHHHGGGSCSSSC---CCE
T ss_pred EEE--EeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcE-EEEEECCHHHHHHHHHHcCCCeeCCE---EEE
Confidence 355 999999999999999999999 99999996643 344 99999999999999999999999999 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|++++...
T Consensus 77 V~~~~~~~ 84 (90)
T 3p5t_L 77 VTPSNKLE 84 (90)
T ss_dssp ECCC----
T ss_pred EEECCCCc
Confidence 99987653
No 284
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=2.4e-15 Score=122.61 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=64.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE-----EE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT-----VY 90 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~-----i~ 90 (448)
.+++|||+|||.++||+||+++|++||+|.+|.|... |||||+|.+.++|++||+.|+ +..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~----g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLD----NTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHT----TCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhC----CCEECCcEeeeEEEE
Confidence 4688999999999999999999999999999998754 999999999999999999998 66899988 56
Q ss_pred Eeecccc
Q 013150 91 LQYSNRQ 97 (448)
Q Consensus 91 v~~s~~~ 97 (448)
|..+...
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 6555443
No 285
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=9.9e-15 Score=116.55 Aligned_cols=83 Identities=25% Similarity=0.264 Sum_probs=72.0
Q ss_pred CCCccEEEEcCCCC-----CCCHHHHHHhhcCCCceEEEEeec-----CCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 14 QPPSKVLHLRNLPW-----ECTEEELIELGKPFGKVVNTKCNV-----GANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 14 ~~~s~~l~V~nLp~-----~~te~~L~~~F~~fG~I~~v~i~~-----~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
..+|++|+|+||-. +-+++||+++|++||+|.+|+|.. ++++|||||+|.+.++|.+|++.|| +..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln----G~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN----GRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT----TCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC----CCE
Confidence 45899999999963 348999999999999999999954 4679999999999999999999999 668
Q ss_pred eeCcEEEEeeccccccc
Q 013150 84 VRGKTVYLQYSNRQEIV 100 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~~~ 100 (448)
++||.|.|.|+......
T Consensus 81 ~~Gr~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 81 FGGRVVKACFYNLDKFR 97 (105)
T ss_dssp ETTEECEEEECCHHHHH
T ss_pred ECCcEEEEEEcCHHHhh
Confidence 99999999998775543
No 286
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=114.69 Aligned_cols=76 Identities=17% Similarity=0.427 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhc--CCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~f--G~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
..+++|| |+||+.++|+++|+++|++| |.|.++++. +|+ |||+|.+.++|++|++.|||..|.|+ .|+|
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v 83 (99)
T 2cpd_A 13 SSVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEV 83 (99)
T ss_dssp SCCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEE
T ss_pred CCcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCe-EEEEeCCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 3467888 89999999999999999999 999998875 365 99999999999999999999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
+|++.+.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9997754
No 287
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.6e-15 Score=118.11 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=69.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhh-cCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCc-cCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~-fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~-l~g~~~~~ 315 (448)
++++|| |+||+.++|+++|+++|++ ||.|.+|++..++ +|+ |||+|.+.++|.+|++.|||.. |.|+ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~g~---~ 81 (104)
T 2dhg_A 8 PEYSLF--VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGY-GFVKFTDELEQKRALTECQGAVGLGSK---P 81 (104)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHHHTTTCCSSSSS---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHHHccCCcccCCE---e
Confidence 467788 8999999999999999999 9999999997653 354 9999999999999999999999 9998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 288
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=1.5e-14 Score=116.21 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=68.5
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..+++|| |.||+..+|+++|+++|++||.|.+|++..++ +| +|||+|.+.++|++|++.|||..|.|+ .|
T Consensus 27 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 100 (107)
T 3ulh_A 27 ETGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG-TADVHFERKADALKAMKQYNGVPLDGR---PM 100 (107)
T ss_dssp CCSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEE-EEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcce-EEEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 3467788 89999999999999999999999999997553 34 499999999999999999999999998 99
Q ss_pred EEEEee
Q 013150 317 HISYSR 322 (448)
Q Consensus 317 ~v~~ak 322 (448)
+|+||+
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 289
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=118.25 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=70.2
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|| |+||+..+++++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|||..+.|+ .|+
T Consensus 8 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 81 (104)
T 1p1t_A 8 LRSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALR 81 (104)
T ss_dssp HSCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred ccEEE--EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence 46678 89999999999999999999999999997553 355 99999999999999999999999999 999
Q ss_pred EEEeeCCcc
Q 013150 318 ISYSRHTDL 326 (448)
Q Consensus 318 v~~ak~~~~ 326 (448)
|+|++....
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999987653
No 290
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.4e-15 Score=118.97 Aligned_cols=79 Identities=28% Similarity=0.409 Sum_probs=70.2
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCee--------EEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCc
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHC 307 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~--------~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~ 307 (448)
..+++|| |.||+.++|+++|+++|++||.|. .|+++.++ +|+ |||+|.+.++|++|++.|||..
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 13 SDNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCEEE--EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeE-EEEEECCHHHHHHHHHHcCCCc
Confidence 4567888 899999999999999999999999 68886542 455 9999999999999999999999
Q ss_pred cCCCceeEEEEEEeeCCc
Q 013150 308 IYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 308 l~g~~~~~i~v~~ak~~~ 325 (448)
|.|+ .|+|+|++.+.
T Consensus 90 ~~g~---~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGS---KLKVSLARKKP 104 (113)
T ss_dssp ETTE---ECEEECSSCCC
T ss_pred cCCC---EEEEEECCCCC
Confidence 9998 99999987754
No 291
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=115.67 Aligned_cols=76 Identities=30% Similarity=0.396 Sum_probs=66.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCC-eeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcC-CccCCCceeEEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHIS 319 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~-I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng-~~l~g~~~~~i~v~ 319 (448)
..++|| |+||+.++|+++|+++|++||. |..+.+. . +|+ |||+|.+.++|++|++.||| ..+.|+ .|+|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~ 78 (93)
T 2cqh_A 7 GMNKLY--IGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K-SGY-AFVDYPDQNWAIRAIETLSGKVELHGK---IMEVD 78 (93)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E-TTE-EEECCSCHHHHHHHHHHHTTTCEETTE---ECEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C-CCE-EEEEECCHHHHHHHHHHccCCeeECCE---EEEEE
Confidence 467788 8999999999999999999999 5555553 3 365 99999999999999999999 999998 99999
Q ss_pred EeeCCc
Q 013150 320 YSRHTD 325 (448)
Q Consensus 320 ~ak~~~ 325 (448)
|++.+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997754
No 292
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.1e-14 Score=117.68 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCcEEEEEEeCCCcc-CCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 242 ESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~-vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+++|| |+||+.+ +|+++|+++|++||.|.+|++ .+|+ |||+|.+.++|++|++.|||..|.|+ .|+|+|
T Consensus 26 ~~~~l~--V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 96 (110)
T 1wf1_A 26 INSRVF--IGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGY-AFVQYSNERHARAAVLGENGRVLAGQ---TLDINM 96 (110)
T ss_dssp CSSEEE--ECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTE-EEEECSSSHHHHHHHHHHTTCEETTE---ECCEEE
T ss_pred CCcEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 357888 9999999 999999999999999999998 3465 99999999999999999999999998 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++...
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97643
No 293
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=116.53 Aligned_cols=76 Identities=12% Similarity=0.333 Sum_probs=68.0
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
+.++|| |.||+.++|+++|+++|+.|| |.+|++..++ +|+ |||+|.+.++|++|+ .|||..|.|+ .
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~ 85 (104)
T 1wi8_A 14 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---R 85 (104)
T ss_dssp SCEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---E
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeE-EEEEECCHHHHHHHH-hcCCCEeCCc---E
Confidence 467777 899999999999999999999 9999996432 466 999999999999999 9999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 294
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=9.4e-15 Score=113.22 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=67.5
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|| |.|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|+ .|||..+.|+ .|+
T Consensus 6 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~g~~~~g~---~l~ 78 (89)
T 3ucg_A 6 ARSIY--VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF-AYIEFSDKESVRTSL-ALDESLFRGR---QIK 78 (89)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEE-EEEEESSTHHHHHHG-GGTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHH-hcCCCEECCc---EEE
Confidence 45677 89999999999999999999999999996543 455 999999999999999 9999999998 999
Q ss_pred EEEeeCC
Q 013150 318 ISYSRHT 324 (448)
Q Consensus 318 v~~ak~~ 324 (448)
|++++..
T Consensus 79 V~~a~~~ 85 (89)
T 3ucg_A 79 VIPKRTN 85 (89)
T ss_dssp EEETTTT
T ss_pred EEEccCC
Confidence 9998764
No 295
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9.8e-15 Score=112.93 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=69.3
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
+++|| |+|||.++++++|+++|++| .|.++++. ..+|+ |||+|.+.++|++|++.|||..+.|+ +|+|+|++
T Consensus 5 ~~~l~--V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGIL--VKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRT-AFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP 76 (88)
T ss_dssp CCCEE--EESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTE-EEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcE-EEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcC
Confidence 56678 89999999999999999999 99999986 44576 99999999999999999999999998 99999997
Q ss_pred CCccc
Q 013150 323 HTDLS 327 (448)
Q Consensus 323 ~~~~~ 327 (448)
.+.+-
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 76543
No 296
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=121.27 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE--EEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCC----ccC
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIY 309 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~--v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~----~l~ 309 (448)
..+++|| |+||+.++|+++|+++|++||.|.. |+|+.++ +|| |||+|.+. +|.+|++.|||. .|.
T Consensus 21 ~~~~~lf--V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~-aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTII--LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF-AFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEE--ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC-EEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE-EEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 4567888 9999999999999999999999976 8886543 566 99999999 999999999999 999
Q ss_pred CCceeEEEEEEeeCCcc
Q 013150 310 DGGFCKLHISYSRHTDL 326 (448)
Q Consensus 310 g~~~~~i~v~~ak~~~~ 326 (448)
|+ .|+|+|++....
T Consensus 97 gr---~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GK---TINVEFAKGSKR 110 (131)
T ss_dssp GC---CCCCEECCCSCC
T ss_pred CE---EEEEEECCCCCC
Confidence 99 999999987643
No 297
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=116.74 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=71.0
Q ss_pred CCCCccEEEEcCCCCCCC-----------HHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCC
Q 013150 13 TQPPSKVLHLRNLPWECT-----------EEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEP 81 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~t-----------e~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~ 81 (448)
...++++|+|+||-...+ +++|+++|++||.|.+|.|....++|||||+|.+.++|++|++.++ +
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ln----g 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLD----G 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHST----T
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcC----C
Confidence 445899999999944332 6899999999999999988656689999999999999999999998 6
Q ss_pred ceeeCcEEEEeeccccc
Q 013150 82 AQVRGKTVYLQYSNRQE 98 (448)
Q Consensus 82 ~~~~g~~i~v~~s~~~~ 98 (448)
..++|+.|.|.|+..+.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 78999999999987654
No 298
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=2.1e-15 Score=138.17 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=70.0
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcC--CeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG--~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.++|| |+||+.++|+++|+++|++|| .|++|+|+.++ +|| |||+|.+.++|++||+.|||..|.|+ .
T Consensus 68 ~~~lf--VgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr---~ 141 (229)
T 3q2s_C 68 RIALY--IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---N 141 (229)
T ss_dssp -CEEE--EESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTB---C
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCE---E
Confidence 45677 999999999999999999999 99999997653 355 99999999999999999999999999 9
Q ss_pred EEEEEeeCCccc
Q 013150 316 LHISYSRHTDLS 327 (448)
Q Consensus 316 i~v~~ak~~~~~ 327 (448)
|+|+|++...+.
T Consensus 142 l~V~~a~~~~~~ 153 (229)
T 3q2s_C 142 PVVTPVNKQFLS 153 (229)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEECCCCccc
Confidence 999999876543
No 299
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-14 Score=115.63 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCC-eeEEEEE-c-----cCCCeEEEEEcCCHHHHHHHHHHhc--CCccCCCc
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMF-D-----KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGG 312 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~-I~~v~i~-~-----~~~g~~afV~f~~~e~A~~Ai~~ln--g~~l~g~~ 312 (448)
.+++|| |+||+.++|+++|+++|+.||. |.++++. . ..+|+ |||+|.+.++|.+|++.|| +..+.|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLF--IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 467788 8999999999999999999998 9999987 2 23565 9999999999999999996 5899998
Q ss_pred eeEEEEEEeeCCc
Q 013150 313 FCKLHISYSRHTD 325 (448)
Q Consensus 313 ~~~i~v~~ak~~~ 325 (448)
.|+|+|++.+.
T Consensus 83 --~l~V~~a~~~~ 93 (109)
T 2dis_A 83 --QIAVDWAEPEI 93 (109)
T ss_dssp --CCEEEESCSSC
T ss_pred --eEEEEEcCCCC
Confidence 99999998764
No 300
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=1.7e-14 Score=115.12 Aligned_cols=77 Identities=10% Similarity=0.309 Sum_probs=68.2
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.||+.++|+++|+++|++|| |++|+++.++ +|+ |||+|.+.++|++|+ .|||..|.|+ .
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~ 84 (103)
T 2dng_A 13 EPPYTAY--VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGF-CYVEFDEVDSLKEAL-TYDGALLGDR---S 84 (103)
T ss_dssp SSCEEEE--EESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHG-GGTTCEETTE---E
T ss_pred CCCeEEE--EeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceE-EEEEECCHHHHHHHH-hhCCCeECCe---E
Confidence 3467787 899999999999999999997 9999997654 355 999999999999999 8999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999997754
No 301
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8e-15 Score=115.84 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |.|||.++++++|+++|++||.|.+++++..+ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 87 (98)
T 2cqp_A 14 GPTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (98)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 357777 89999999999999999999999877664432 355 99999999999999999999999998 99
Q ss_pred EEEEeeCC
Q 013150 317 HISYSRHT 324 (448)
Q Consensus 317 ~v~~ak~~ 324 (448)
+|+|++..
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 302
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4.9e-14 Score=111.09 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=67.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
..+++|| |+|| ++|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|++|++.|||..|.|+ .|+|+|
T Consensus 13 ~~~~~l~--V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-NC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNI 83 (97)
T ss_dssp CCCSEEE--EECS--SCCHHHHHHHHTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEC
T ss_pred CCCCEEE--EcCC--CCCHHHHHHHHhhCCCEEEEEecCCC-CE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEE
Confidence 3467888 7886 89999999999999999999986444 65 99999999999999999999999998 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++.+.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 97764
No 303
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=115.62 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=67.4
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
.++|| |+|||.++|+++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|.+|++ |||..+.|+ .|+|
T Consensus 11 ~~~lf--V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~-aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V 83 (103)
T 1s79_A 11 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI 83 (103)
T ss_dssp GGCEE--EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCE-EEEEESSHHHHHHHHT-SSCCCCTTT---TCEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence 56788 8999999999999999999999999999754 3566 9999999999999999 999999999 9999
Q ss_pred EEeeC
Q 013150 319 SYSRH 323 (448)
Q Consensus 319 ~~ak~ 323 (448)
.|++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99765
No 304
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=121.14 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=67.3
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |+|||.++|+++|+++|++||.|.++++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 61 ~~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 134 (140)
T 2ku7_A 61 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 134 (140)
T ss_dssp SSCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSE-EEEEESCHHHHHHHHHHSTEEEETTE---E
T ss_pred CCCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4567888 8999999999999999999999999999654 2465 99999999999999999999999998 9
Q ss_pred EEEEEe
Q 013150 316 LHISYS 321 (448)
Q Consensus 316 i~v~~a 321 (448)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 305
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-15 Score=114.85 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=66.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
++++|| |+|||.++++++|+++|++||.|.++++..++ +|+ |||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~~ 77 (85)
T 1x4e_A 4 GSSGLY--IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ---MA 77 (85)
T ss_dssp CCCEEE--EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE---SC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhcCCeEeeE---EE
Confidence 467788 89999999999999999999999999996643 465 99999999999999999999999998 77
Q ss_pred EEEEee
Q 013150 317 HISYSR 322 (448)
Q Consensus 317 ~v~~ak 322 (448)
++++++
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 776643
No 306
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=4.5e-15 Score=117.79 Aligned_cols=76 Identities=12% Similarity=0.331 Sum_probs=66.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
...++|| |+||+.++|+++|+++|+.|| |.+|++..++ +|+ |||+|.+.++|.+|+ .|||..|.|+
T Consensus 17 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~Ai-~l~g~~~~g~--- 88 (100)
T 2j76_E 17 SPPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNR--- 88 (100)
T ss_dssp ---CEEE--ESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSC-EEEEECCHHHHHHHH-HTTTCCBTTB---
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeE-EEEEECCHHHHHHHH-hcCCCEECCe---
Confidence 3467788 999999999999999999999 9999996543 566 999999999999999 8999999998
Q ss_pred EEEEEEeeCC
Q 013150 315 KLHISYSRHT 324 (448)
Q Consensus 315 ~i~v~~ak~~ 324 (448)
.|+|+|++.+
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998765
No 307
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=3.3e-14 Score=122.46 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |.||+.++|+++|+++|++||.|++|+|..++ +|+ |||+|.+.++|++||+.|||..|.|+ .|
T Consensus 38 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 111 (156)
T 1h2v_Z 38 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II 111 (156)
T ss_dssp TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 467888 89999999999999999999999999996553 244 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+||+...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998643
No 308
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=115.43 Aligned_cols=78 Identities=14% Similarity=0.298 Sum_probs=69.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|++|++. ||..|.|+ .
T Consensus 14 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g~---~ 86 (105)
T 2dh8_A 14 DEIGKLF--VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGF-GFVKFKDPNCVGTVLAS-RPHTLDGR---N 86 (105)
T ss_dssp SSSSEEC--CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSTTHHHHHHHH-CSEEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceE-EEEEECCHHHHHHHHHh-CCCeECCE---E
Confidence 4567888 99999999999999999999999999997653 245 99999999999999999 99999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999987654
No 309
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=9.4e-15 Score=109.35 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=62.2
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
|+|+|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++ |||..+.|+ .|+|+||
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBE-EEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 3489999999999999999999999999986543 455 9999999999999998 999999999 9999875
No 310
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=125.19 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=69.5
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcC--CeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG--~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
.++|| |+||+.++|+++|+++|+.|| .|.+|+++.++ +|| |||+|.+.++|++||+.|||..|.|+ .
T Consensus 55 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr---~ 128 (156)
T 3n9u_C 55 RAAVY--VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGE---K 128 (156)
T ss_dssp -CEEE--EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence 46777 999999999999999999999 99999997543 355 99999999999999999999999999 9
Q ss_pred EEEEEeeCCcc
Q 013150 316 LHISYSRHTDL 326 (448)
Q Consensus 316 i~v~~ak~~~~ 326 (448)
|+|++++.+.+
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999977643
No 311
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=114.18 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=67.9
Q ss_pred CCcEEEEEEeCCCccC------CHHHHHHHHhhcCCeeEEEEEcc---CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCc
Q 013150 242 ESNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 312 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~v------t~~~L~~~F~~fG~I~~v~i~~~---~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~ 312 (448)
.+++|| |+|||..+ ++++|+++|++||.|.+|++.+. .+|+ |||+|.+.++|.+|++.|||..|.|+
T Consensus 14 ~~~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~~~g~- 89 (105)
T 2nlw_A 14 IDSVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ- 89 (105)
T ss_dssp CCSEEE--EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCE-EEEEECSSSHHHHHHHHCSSEECSTT-
T ss_pred CCCEEE--EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeE-EEEEECCHHHHHHHHHHhCCcccCCC-
Confidence 367788 89999999 78999999999999999998742 2465 99999999999999999999999985
Q ss_pred eeEEEEEEeeCC
Q 013150 313 FCKLHISYSRHT 324 (448)
Q Consensus 313 ~~~i~v~~ak~~ 324 (448)
++|+|+|++..
T Consensus 90 -~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 -HTFRVNLFTDF 100 (105)
T ss_dssp -CEEEEECSCCC
T ss_pred -ceEEEEEcchH
Confidence 38999998653
No 312
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=5.9e-15 Score=115.89 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |.|||.++|+++|+++|++||.|.+++++.++ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~l 87 (95)
T 2ek1_A 14 GPTVIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (95)
T ss_dssp -CEEEE--EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeE-EEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence 457777 89999999999999999999999888775432 355 99999999999999999999999998 99
Q ss_pred EEEEee
Q 013150 317 HISYSR 322 (448)
Q Consensus 317 ~v~~ak 322 (448)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999875
No 313
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=117.15 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|| |.||+.++|+++|+++|+.||.|.+|+++.+ .+|+ |||+|.+.++|++|+ .|||..|.|+ .|+
T Consensus 25 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 97 (114)
T 2cq4_A 25 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAI-GLTGQRLLGV---PII 97 (114)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHH-HHTTEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcE-EEEEeCcHHHHHHHH-HcCCCEeCCe---EEE
Confidence 46788 8999999999999999999999999999643 2466 999999999999999 9999999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++.+.
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99998754
No 314
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=3.2e-14 Score=109.70 Aligned_cols=74 Identities=12% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |+|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|.+|++ ++|..|.|+ .
T Consensus 9 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~ 81 (87)
T 3s7r_A 9 EDAGKMF--VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF-GFILFKDAASVEKVLD-QKEHRLDGR---V 81 (87)
T ss_dssp SCTTEEE--EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSTHHHHHHHH-SSCEEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccE-EEEEECCHHHHHHHHH-hCCCEECCE---E
Confidence 3467888 89999999999999999999999999997543 344 9999999999999996 588889998 9
Q ss_pred EEEEEe
Q 013150 316 LHISYS 321 (448)
Q Consensus 316 i~v~~a 321 (448)
|+|++|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999885
No 315
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=2.4e-14 Score=116.66 Aligned_cols=73 Identities=10% Similarity=0.168 Sum_probs=64.3
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE-----EE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----LH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~-----i~ 317 (448)
.+.|| |.||+.++|+++|+++|++||.|++|+|+.+ |+ |||+|.+.++|++||+.|||..|.|+ . |+
T Consensus 16 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIR 87 (115)
T ss_dssp -CCEE--EEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CE-EEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEE
Confidence 56677 8999999999999999999999999999766 65 99999999999999999999999998 6 66
Q ss_pred EEEeeC
Q 013150 318 ISYSRH 323 (448)
Q Consensus 318 v~~ak~ 323 (448)
|..++.
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666544
No 316
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=113.01 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..+++|| |.||+.++|+++|+++|++||.| ++..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 83 (101)
T 2fc9_A 13 GESKTLV--LSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREIEGR---AI 83 (101)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSE-EEEECSSHHHHHHHHHHTSSEEETTE---EE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeE-EEEEECCHHHHHHHHHHhCCCEeCCe---EE
Confidence 3578888 89999999999999999999987 34332 2465 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999997753
No 317
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=115.98 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=68.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCe----eEEEEEccC-CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I----~~v~i~~~~-~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
++++|| |+||+.++|+++|+++|+.||.| +.+++...+ +|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 24 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 97 (115)
T 2cpx_A 24 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL 97 (115)
T ss_dssp CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 467888 89999999999999999999999 566665433 565 99999999999999999999999998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+|++.+.
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998765
No 318
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=114.27 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=67.4
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
..++|| |+||+.++|+++|+++|+.||.|..+......+|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 88 (96)
T 1fjc_A 15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT 88 (96)
T ss_dssp GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEc
Confidence 467888 89999999999999999999999877222223465 99999999999999999999999998 9999999
Q ss_pred eCCc
Q 013150 322 RHTD 325 (448)
Q Consensus 322 k~~~ 325 (448)
+.+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 319
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3.2e-14 Score=110.20 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=62.7
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+..+|| |+||+.++|+++|+++|++||.|.+++++.+++|+ |||+|.+.++|+ .|+|..+.++ .+.|+|++
T Consensus 9 ~~~~~l~--V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGf-aFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVF--VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF-AFVTFADDKVAQ----SLCGEDLIIK-GISVHISN 80 (89)
T ss_dssp --CCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSE-EEEEESCHHHHH----HHTTCEEEET-TEEEEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCE-EEEEECCHHHHH----HHcCCCcccC-CEEEEEEE
Confidence 3467888 89999999999999999999999999998877787 999999999998 3777766522 23999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
|+.+.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 98754
No 320
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=2.3e-14 Score=118.46 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=68.0
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|| |+||+.++|+++|+++|++||.|.+|++..++ +|+ |||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 36 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 108 (124)
T 2jwn_A 36 KRSVY--VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY-AYIEFAERNSVDAAV-AMDETVFRGR---TIK 108 (124)
T ss_dssp HTEEE--EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE-EEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE-EEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence 46788 89999999999999999999999999996542 355 999999999999999 7999999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++...
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998654
No 321
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-13 Score=111.81 Aligned_cols=78 Identities=15% Similarity=0.280 Sum_probs=68.4
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccC-------
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIY------- 309 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~------- 309 (448)
...++|| |.||+.++|+++|+++|+.||.|.++++..++ +|+ |||+|.+.++|++|++.|||..|.
T Consensus 23 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 23 QDPTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCTTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3467788 89999999999999999999999999997653 344 999999999999999999999994
Q ss_pred -CCceeEEEEEEeeCC
Q 013150 310 -DGGFCKLHISYSRHT 324 (448)
Q Consensus 310 -g~~~~~i~v~~ak~~ 324 (448)
++ +|+|.|+++.
T Consensus 100 ~~~---~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTE---PLLCKFSGPS 112 (114)
T ss_dssp CSS---CBEEEECCCS
T ss_pred CCC---ceeEEccCCC
Confidence 55 8999998754
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=111.34 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=65.3
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEee
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 322 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak 322 (448)
.++|| |+||+.++|+++|+++|++||.|.+| +.....|.+|||+|.+.++|++|++ |||..|.|+ .|+|+++.
T Consensus 8 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVF--VSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPRE 80 (94)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSC
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECC
Confidence 56788 89999999999999999999999998 4433323259999999999999999 999999998 99999876
Q ss_pred CCc
Q 013150 323 HTD 325 (448)
Q Consensus 323 ~~~ 325 (448)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 323
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=3.6e-14 Score=142.14 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=74.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEee----cCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 13 TQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCN----VGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 13 ~~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~----~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
...++++|||+|||.++|+++|+++|++||.|+.|.|+ +++++|||||+|.+.++|++||+.|+ +..|.|+.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln----g~~i~gr~ 173 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD----GKKIDGRR 173 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC----CCEECCEE
Confidence 34567899999999999999999999999999999994 56679999999999999999999998 67999999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.|+....
T Consensus 174 i~V~~a~~~~ 183 (437)
T 3pgw_S 174 VLVDVERGRT 183 (437)
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 324
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=7.2e-15 Score=114.19 Aligned_cols=74 Identities=15% Similarity=0.322 Sum_probs=64.0
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
+|| |+||+.++++++|+++|++||.|.++++..++ +|+ |||+|.+.+ |.+|++.|||..+.|+ .|+|+
T Consensus 3 ~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~ 75 (90)
T 2ki2_A 3 NIY--VGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGF-GFVEMQEES-VSEAIAKLDNTDFMGR---TIRVT 75 (90)
T ss_dssp EEE--EEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEE-EEEEECTTH-HHHHHHTSCSSCCSSS---SCSEE
T ss_pred EEE--ECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceE-EEEEECCHH-HHHHHHHhCCCEECCe---EEEEE
Confidence 466 89999999999999999999999999996542 455 999999999 9999999999999999 99999
Q ss_pred EeeCCc
Q 013150 320 YSRHTD 325 (448)
Q Consensus 320 ~ak~~~ 325 (448)
||+...
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 987754
No 325
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=3.5e-14 Score=126.55 Aligned_cols=75 Identities=13% Similarity=0.299 Sum_probs=67.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEEee
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQY 93 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v~~ 93 (448)
+++|||+|||.++|+++|+++|++||.|.+|++.. ++++|||||+|.+.++|++||+.++ ..++|+.|.|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-----~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-----QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-----CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-----CeECCEEEEEEE
Confidence 58999999999999999999999999999999854 6679999999999999999998765 389999999997
Q ss_pred ccc
Q 013150 94 SNR 96 (448)
Q Consensus 94 s~~ 96 (448)
.+.
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 654
No 326
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=2.5e-14 Score=130.44 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCccEEEEcCCCCCC---------CHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee
Q 013150 14 QPPSKVLHLRNLPWEC---------TEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV 84 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~---------te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~ 84 (448)
...+++|||+||+.++ ||++|+++|++||+|++|+|+. +||||||+|.+.++|+.|++.|++ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g----~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSN----QTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTT----CCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCC----CEE
Confidence 4568999999999998 7999999999999999999984 599999999999999999999994 455
Q ss_pred ------------eCcEEEEeeccccc
Q 013150 85 ------------RGKTVYLQYSNRQE 98 (448)
Q Consensus 85 ------------~g~~i~v~~s~~~~ 98 (448)
.|+.|.|.|++.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 327
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-13 Score=107.10 Aligned_cols=75 Identities=7% Similarity=0.132 Sum_probs=67.4
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..++|| |+|||.++|+++|+++|+.| .|.+|+++.+. +|+ |||+|.+.++|++|++ |||..|.|+ .|+
T Consensus 9 ~~~~l~--v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~g~~~~gr---~i~ 80 (91)
T 2dgw_A 9 TCHTVK--LRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGY-IFVDFSNEEEVKQALK-CNREYMGGR---YIE 80 (91)
T ss_dssp CCCEEE--EECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEE-EEEECSSHHHHHHHHH-SCSEEETTE---EEE
T ss_pred CccEEE--EECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-hCCceeCCc---EEE
Confidence 367788 89999999999999999999 99999997653 344 9999999999999999 999999998 999
Q ss_pred EEEeeCC
Q 013150 318 ISYSRHT 324 (448)
Q Consensus 318 v~~ak~~ 324 (448)
|.+++.+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9999765
No 328
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=4.6e-14 Score=113.78 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
.+++|| |+||+.++|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|.+|++.+ |..|.|+ .|
T Consensus 24 ~~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-afV~f~~~~~A~~Ai~~~-~~~l~g~---~l 96 (109)
T 2rs2_A 24 SGCKMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQS-RHELDSK---TI 96 (109)
T ss_dssp --CCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTC-EEEEESSHHHHHHHHHSS-CEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcE-EEEEECCHHHHHHHHHHC-CCcCCCE---EE
Confidence 467788 89999999999999999999999999996543 466 999999999999999987 5888998 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|++++.+.
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999997754
No 329
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=6.1e-14 Score=111.95 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=66.7
Q ss_pred CCCcEEEEEEeCCCc-----cCCHHHHHHHHhhcCCeeEEEEEcc------CCCeEEEEEcCCHHHHHHHHHHhcCCccC
Q 013150 241 PESNVLLASIENMQY-----AVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIY 309 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~-----~vt~~~L~~~F~~fG~I~~v~i~~~------~~g~~afV~f~~~e~A~~Ai~~lng~~l~ 309 (448)
.++++|+ +.|+.. +-++++|+++|++||.|++|+|... .+|+ |||+|.+.++|.+|++.|||+.+.
T Consensus 6 ~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~-~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR-IFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE-EEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE-EEEEECCHHHHHHHHHHHCCCEEC
Confidence 3577888 778852 2368999999999999999999653 2465 999999999999999999999999
Q ss_pred CCceeEEEEEEeeCCc
Q 013150 310 DGGFCKLHISYSRHTD 325 (448)
Q Consensus 310 g~~~~~i~v~~ak~~~ 325 (448)
|+ .|+|+|++...
T Consensus 83 Gr---~i~v~~a~~~~ 95 (105)
T 2pe8_A 83 GR---VVKACFYNLDK 95 (105)
T ss_dssp TE---ECEEEECCHHH
T ss_pred Cc---EEEEEEcCHHH
Confidence 99 99999997654
No 330
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=9.9e-14 Score=113.90 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=67.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
..+++|| |+|+ ++|+++|+++|++||.|.+|++...+ |+ |||+|.+.++|++|++.|||..|.|+ .|+|+|
T Consensus 37 ~~~~~lf--Vgnl--~~te~~L~~~F~~~G~I~~v~i~~~k-g~-aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-NC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNI 107 (121)
T ss_dssp CCCCEEE--EECS--SCCHHHHHHHHSTTCCCSCEEEETTT-TE-EEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCCCEEE--EcCC--CCCHHHHHHHHHccCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEE
Confidence 3467888 7886 79999999999999999999997544 65 99999999999999999999999998 999999
Q ss_pred eeCCc
Q 013150 321 SRHTD 325 (448)
Q Consensus 321 ak~~~ 325 (448)
++...
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98764
No 331
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=107.39 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=63.4
Q ss_pred EEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEE
Q 013150 245 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 319 (448)
Q Consensus 245 ~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~ 319 (448)
+|| |+|||.++|+++|+++|++||.|.++++..++ +|+ |||+|.+.++|++|++.|| ..+.|+ .|+|+
T Consensus 2 ~l~--v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~ 74 (77)
T 1uaw_A 2 KMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQSR-HELDSK---TIDPK 74 (77)
T ss_dssp CEE--EESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHHTTT-CCCSSC---CCEEE
T ss_pred EEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCce-EEEEEcCHHHHHHHHHhCC-CccCCE---EEEEE
Confidence 356 89999999999999999999999999997653 455 9999999999999999999 999998 99999
Q ss_pred Ee
Q 013150 320 YS 321 (448)
Q Consensus 320 ~a 321 (448)
+|
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 332
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.5e-14 Score=115.53 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=64.7
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhcCCCceEEEEe----ecCCCcceEEEEecC----HHH----HHHHHH--HhhcCC
Q 013150 18 KVLHLRNL----PWECTEEELIELGKPFGKVVNTKC----NVGANRNQAFIEFAD----LNQ----AIAMIS--YYASSS 79 (448)
Q Consensus 18 ~~l~V~nL----p~~~te~~L~~~F~~fG~I~~v~i----~~~~~kg~afVeF~~----~e~----A~~Al~--~~~~~~ 79 (448)
..|||+|| |++++|.+|+++|+.||+|.++++ .+|+++|||||+|.+ +++ |.+|++ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln--- 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS--- 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT---
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc---
Confidence 68999999 999999999999999999999999 456789999999996 333 788888 455
Q ss_pred CCceeeCcEEEEeecccc
Q 013150 80 EPAQVRGKTVYLQYSNRQ 97 (448)
Q Consensus 80 ~~~~~~g~~i~v~~s~~~ 97 (448)
+..|+|+.|+|.+....
T Consensus 80 -g~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 80 -GCFIMGFKFEVILNKHS 96 (136)
T ss_dssp -CEEETTEEEEEEECCTT
T ss_pred -CCeecCcEEEEEECccc
Confidence 78999999999876543
No 333
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=5.4e-14 Score=115.06 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCC---eeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~---I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
...++|| |+||+.++|+++|+++|+.||. |.+|+|..++ +|+ |||+|.+.++|++||+ |||..|.|+
T Consensus 15 ~~~~~l~--V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr-- 88 (118)
T 2db1_A 15 GEGYVVK--LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGE-AFVELESEDDVKLALK-KDRESMGHR-- 88 (118)
T ss_dssp CCCCEEE--EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEE-EEEEBSSHHHHHHHGG-GTTEEETTE--
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCeECCe--
Confidence 3467788 8999999999999999999999 8999986543 344 9999999999999999 999999998
Q ss_pred eEEEEEEeeCCcc
Q 013150 314 CKLHISYSRHTDL 326 (448)
Q Consensus 314 ~~i~v~~ak~~~~ 326 (448)
.|+|.+++.++.
T Consensus 89 -~i~V~~a~~~~~ 100 (118)
T 2db1_A 89 -YIEVFKSHRTEM 100 (118)
T ss_dssp -EEEEEEECHHHH
T ss_pred -EEEEEECCHHHH
Confidence 999999977653
No 334
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=109.35 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.7
Q ss_pred cEEEEEEeCCCccC------CHHHHHHHHhhcCCeeEEEEEcc---CCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 244 NVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 244 ~~l~v~v~nl~~~v------t~~~L~~~F~~fG~I~~v~i~~~---~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
++|| |+|||..+ ++++|+++|++||.|.++++.+. .+|+ |||+|.+.++|.+|++.|||..+.|+
T Consensus 2 ~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEE--EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCE-EEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEE--EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEE-EEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4577 89999999 67999999999999999998642 2465 99999999999999999999999886
No 335
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=110.18 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=67.7
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE-EEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~-v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |+|||.++|+++|+++|+.||.|.+ |+|..+ .+|+ |||+|.+.++|++|++. ||..|.|+ .|
T Consensus 14 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~-afV~F~~~~~a~~A~~~-~~~~~~gr---~i 86 (104)
T 1wg5_A 14 NDGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALKK-HKERIGHR---YI 86 (104)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHTT-TTCCSSSS---CC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CcchhCCc---EE
Confidence 467777 8999999999999999999999987 777543 2465 99999999999999997 99999999 99
Q ss_pred EEEEeeCCcc
Q 013150 317 HISYSRHTDL 326 (448)
Q Consensus 317 ~v~~ak~~~~ 326 (448)
+|.++...+.
T Consensus 87 ~v~~~~~~~~ 96 (104)
T 1wg5_A 87 EIFKSSRAEV 96 (104)
T ss_dssp EEEEECTTTS
T ss_pred EEEECCHHHH
Confidence 9999876553
No 336
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=109.37 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=67.1
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
...++|| |.||+.++|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|++|++ ++..|.|+ .
T Consensus 13 ~~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~--~~~~~~g~---~ 84 (103)
T 2cqg_A 13 QKTSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMS--QRHMIDGR---W 84 (103)
T ss_dssp CCCCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHH--SCEEETTE---E
T ss_pred CCCCEEE--EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccce-EEEEECCHHHHHHHHH--cCCeeCCe---E
Confidence 3467788 89999999999999999999999999996653 344 9999999999999999 47788888 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|.|++.+.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999987754
No 337
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.2e-14 Score=114.84 Aligned_cols=76 Identities=13% Similarity=0.257 Sum_probs=68.6
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.++|| |.||+.++|+++|+++|+.||.|.+|+++.++ +|+ |||+|.+.++|++||+. ||..|.|+ .|+
T Consensus 27 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~ 99 (116)
T 1x4b_A 27 FRKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMAA-RPHSIDGR---VVE 99 (116)
T ss_dssp HTEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCce-EEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence 46788 89999999999999999999999999997653 465 99999999999999998 99999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++.+.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99987764
No 338
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.9e-14 Score=114.12 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCe-eEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I-~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |+|||.++|+++|+++|+.||.| .+|+|+.+ .+|+ |||+|.+.++|++||+. ||..|.|+ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~~-~~~~~~gr---~i 86 (114)
T 2cpy_A 14 AKVCAH--ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSERL-HRKKLNGR---EA 86 (114)
T ss_dssp CCCEEE--EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGGG-CSEEETTE---EE
T ss_pred CccEEE--EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CCCccCCe---EE
Confidence 456777 89999999999999999999999 88888643 3566 99999999999999997 99999998 99
Q ss_pred EEEEeeCCccc
Q 013150 317 HISYSRHTDLS 327 (448)
Q Consensus 317 ~v~~ak~~~~~ 327 (448)
+|.+++.+...
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2cpy_A 87 FVHVVTLEDMR 97 (114)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999877543
No 339
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-14 Score=112.79 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=65.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEE----EccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM----FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i----~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..++|| |+||+.++|+++|+++|+.||.|....+ ....+|+ |||+|.+.++|++|++ |||..|.|+ .|+
T Consensus 16 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~-l~g~~~~g~---~l~ 88 (101)
T 1fj7_A 16 TPFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIK 88 (101)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGCCBTTB---CCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcE-EEEEECCHHHHHHHHh-cCCcEECCc---EEE
Confidence 456777 8999999999999999999998876222 1233576 9999999999999999 999999998 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|+|++.+.
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99997654
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.6e-14 Score=110.68 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=65.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..++|| |.|||.++|+++|+++|+.|| +++|+|+.++ +|+ |||+|.+.++|++||+ +|+..|.++ .|+
T Consensus 14 ~~~~l~--V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~i~ 85 (102)
T 1wez_A 14 TGHCVH--MRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVE 85 (102)
T ss_dssp SSCEEE--EESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 456777 899999999999999999999 5599886544 345 9999999999999995 899999999 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99876543
No 341
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=3.9e-13 Score=129.15 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCCCCCCCccEEEEcC--CCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCcee-
Q 013150 8 PQFRYTQPPSKVLHLRN--LPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQV- 84 (448)
Q Consensus 8 ~~~~~~~~~s~~l~V~n--Lp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~- 84 (448)
...+...+|+++|||+| |+.++||++|+++|++||+|.+|++.. +||||||+|.+.++|++|++.||+ ..+
T Consensus 9 ~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG----~~~~ 82 (345)
T 3tht_A 9 EGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNG----KEVV 82 (345)
T ss_dssp TTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTT----CEEE
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCC----Cccc
Confidence 34566788999999999 578999999999999999999988764 589999999999999999999995 344
Q ss_pred --eCc--EEEEeecccc
Q 013150 85 --RGK--TVYLQYSNRQ 97 (448)
Q Consensus 85 --~g~--~i~v~~s~~~ 97 (448)
.|+ .|+|.|....
T Consensus 83 ~~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 83 DDLGQKITLYLNFVEKV 99 (345)
T ss_dssp CTTSCEEECEEEECSSE
T ss_pred cccCCceEEEEEEeecc
Confidence 245 6788887543
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=117.42 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=67.8
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE--------EEEE--ccCCCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMF--DKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~--------v~i~--~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
.++++|| |+||+.++|+++|+++|+.||.|.+ +++. ...+|+ |||+|.+.++|.+|++.|||..|.|
T Consensus 43 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIY--VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEE--EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3467888 8999999999999999999999876 4332 233455 9999999999999999999999999
Q ss_pred CceeEEEEEEeeCCc
Q 013150 311 GGFCKLHISYSRHTD 325 (448)
Q Consensus 311 ~~~~~i~v~~ak~~~ 325 (448)
+ .|+|+||+...
T Consensus 120 ~---~l~V~~a~~~~ 131 (143)
T 3egn_A 120 K---PMVVQFARSAR 131 (143)
T ss_dssp E---ECEEEECCCSC
T ss_pred c---EEEEEECCCCC
Confidence 8 99999998754
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.1e-13 Score=126.22 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCCcEEEEEEeCCCccC---------CHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCcc---
Q 013150 241 PESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--- 308 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~v---------t~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l--- 308 (448)
..+++|| |+||+..+ ++++|+++|++||.|++|+|+..+ |+ |||+|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLf--VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~-AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLY--VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NC-GFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEE--EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceee--cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CE-EEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 3578898 89999988 799999999999999999998765 65 99999999999999999999999
Q ss_pred ---------CCCceeEEEEEEeeCCc
Q 013150 309 ---------YDGGFCKLHISYSRHTD 325 (448)
Q Consensus 309 ---------~g~~~~~i~v~~ak~~~ 325 (448)
.|+ .|+|.||+...
T Consensus 208 ~~~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSC---CCEEEECC---
T ss_pred ccccccccCCCC---EEEEEEccCCC
Confidence 777 99999998754
No 344
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.2e-13 Score=110.30 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=70.3
Q ss_pred CCCccEEEEcCC--CCCCC--------HHHHHHhhcCCCceEEEEeecC------CCcceEEEEecCHHHHHHHHHHhhc
Q 013150 14 QPPSKVLHLRNL--PWECT--------EEELIELGKPFGKVVNTKCNVG------ANRNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 14 ~~~s~~l~V~nL--p~~~t--------e~~L~~~F~~fG~I~~v~i~~~------~~kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
..||++|.|+|+ |.++. ++||+++|++||+|.+|+|.+. +++|+|||+|.+.++|++|++.||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln- 80 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT- 80 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT-
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC-
Confidence 358999999998 44554 3699999999999999999543 468999999999999999999999
Q ss_pred CCCCceeeCcEEEEeecccccc
Q 013150 78 SSEPAQVRGKTVYLQYSNRQEI 99 (448)
Q Consensus 78 ~~~~~~~~g~~i~v~~s~~~~~ 99 (448)
+..++||.|.|.|......
T Consensus 81 ---G~~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 81 ---GRKFANRVVVTKYCDPDSY 99 (105)
T ss_dssp ---TCEETTEECEEEEECHHHH
T ss_pred ---CCEeCCCEEEEEEeCHHHH
Confidence 6699999999999876543
No 345
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=109.00 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=64.6
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..+++|| |.||+.++|+++|+++|+.|+ +++++..+ +|+ |||+|.+.++|++|++.|||..|.|+ .
T Consensus 13 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 2fc8_A 13 QPSKTLF--VKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGF-GFVDFNSEEDAKAAKEAMEDGEIDGN---K 83 (102)
T ss_dssp CCCSSEE--EECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCCEEE--EeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCeECCe---E
Confidence 4567788 899999999999999999885 45554332 355 99999999999999999999999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|+|++.+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999997754
No 346
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.46 E-value=7.3e-14 Score=116.80 Aligned_cols=78 Identities=10% Similarity=0.180 Sum_probs=69.1
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCC---eeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~---I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
..++|| |+||+.++|+++|+++|+.||. |.+|+|..++ +|+ |||+|.+.++|++|++ |||..|.|+
T Consensus 43 ~~~~lf--VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~-aFV~F~~~e~a~~Al~-~~g~~l~gr--- 115 (136)
T 2hgl_A 43 EGFVVK--LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGE-AFVELGSEDDVKMALK-KDRESMGHR--- 115 (136)
T ss_dssp TTCEEE--EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEE-EEEECSSHHHHHHHHT-TTEEESSSS---
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCEECCE---
Confidence 467788 8999999999999999999999 8899986543 345 9999999999999999 999999999
Q ss_pred EEEEEEeeCCcc
Q 013150 315 KLHISYSRHTDL 326 (448)
Q Consensus 315 ~i~v~~ak~~~~ 326 (448)
.|+|.+++.++.
T Consensus 116 ~i~V~~a~~~e~ 127 (136)
T 2hgl_A 116 YIEVFKSHRTEM 127 (136)
T ss_dssp EEEEEECCHHHH
T ss_pred EEEEEECChHHH
Confidence 999999876653
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=119.41 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..+++|| |.||+..+++++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|++|++.|||..|.|+ .|
T Consensus 86 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~-afV~F~~~~~A~~Ai~~lng~~l~Gr---~l 159 (177)
T 2f3j_A 86 ETGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PM 159 (177)
T ss_dssp TTCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC-EEEEESCHHHHHHHHHHSTTCBCSSS---BC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE-EEEEeCCHHHHHHHHHHhCCCEECCE---EE
Confidence 4567888 8999999999999999999999999999653 2465 99999999999999999999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|+||....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 999997754
No 348
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.8e-14 Score=116.00 Aligned_cols=77 Identities=5% Similarity=0.057 Sum_probs=66.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEE-EEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 316 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~-i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i 316 (448)
..++|| |+|||.++|+++|+++|+.||.|.++. +..+. +|+ |||+|.+.++|.+||+ |||..|.|+ .|
T Consensus 24 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~i 96 (124)
T 1wel_A 24 AGFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FI 96 (124)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CB
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeE-EEEEECCHHHHHHHHH-hCCCeECCc---EE
Confidence 456777 999999999999999999999998743 33222 355 9999999999999999 999999999 99
Q ss_pred EEEEeeCCc
Q 013150 317 HISYSRHTD 325 (448)
Q Consensus 317 ~v~~ak~~~ 325 (448)
+|.+++.+.
T Consensus 97 ~V~~a~~~~ 105 (124)
T 1wel_A 97 QVHPITKKG 105 (124)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999998765
No 349
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=4.7e-14 Score=113.32 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCC---eeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~---I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
..++|| |+||+.++|+++|+++|+.||. |.+|+|..++ +|+ |||+|.+.++|.+|++ |||..|.|+
T Consensus 10 ~~~~l~--V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr--- 82 (107)
T 2lmi_A 10 DVFLIR--AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGD-ALIEMESEQDVQKALE-KHRMYMGQR--- 82 (107)
T ss_dssp SCCEEE--EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSE-EEEEBSSHHHHHHHHT-TTTCCSSSS---
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCcceeCCe---
Confidence 456777 8999999999999999999998 8999986543 465 9999999999999999 999999999
Q ss_pred EEEEEEeeCCcc
Q 013150 315 KLHISYSRHTDL 326 (448)
Q Consensus 315 ~i~v~~ak~~~~ 326 (448)
.|+|.+++.++.
T Consensus 83 ~i~V~~a~~~~~ 94 (107)
T 2lmi_A 83 YVEVYEINNEDV 94 (107)
T ss_dssp CCCCEECCHHHH
T ss_pred EEEEEECCHHHH
Confidence 999999987653
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.5e-14 Score=107.88 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=63.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCcc--CCCceeEEEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHIS 319 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l--~g~~~~~i~v~ 319 (448)
.+++|| |+|||.++|+++|+++|++||.|.++++..+++|+ |||+|.+.++|++ +++..+ .+. +|+|+
T Consensus 4 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~----~~~~~~~~~g~---~l~v~ 73 (88)
T 1wf0_A 4 GSSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQS----LCGEDLIIKGI---SVHIS 73 (88)
T ss_dssp CCCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHH----TTTCEEEETTE---EEEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCE-EEEEECCHHHHHH----HhcCCceeCCE---EEEEE
Confidence 367788 89999999999999999999999999998777787 9999999999975 455544 565 99999
Q ss_pred EeeCCc
Q 013150 320 YSRHTD 325 (448)
Q Consensus 320 ~ak~~~ 325 (448)
+++.+.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.42 E-value=2.5e-13 Score=104.56 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=63.7
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhc----C-------CeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~f----G-------~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
..++|| |+|||.++|+++|+++|++| | .|.++++..++ |+ |||+|.+.++|.+|+ .|||..+.|
T Consensus 5 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~-afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SE-EEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cE-EEEEcCCHHHHHHHH-hcCCCEECC
Confidence 367788 89999999999999999999 8 89999987664 65 999999999999999 999999999
Q ss_pred CceeEEEEE
Q 013150 311 GGFCKLHIS 319 (448)
Q Consensus 311 ~~~~~i~v~ 319 (448)
+ .|+|+
T Consensus 80 ~---~l~V~ 85 (87)
T 2hzc_A 80 Q---SLKIR 85 (87)
T ss_dssp E---ECEEE
T ss_pred e---EEEEe
Confidence 8 88886
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=1.1e-13 Score=103.51 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=60.7
Q ss_pred EEeCCCccCCHHHHHHHHhhcCCeeEEEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEe
Q 013150 249 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 321 (448)
Q Consensus 249 ~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~a 321 (448)
+|+|||.++|+++|+++|++||.|.++++..+ ++|+ |||+|.+.++|.+|++. +|..+.|+ .|+|++|
T Consensus 3 ~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a 75 (75)
T 1iqt_A 3 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA 75 (75)
T ss_dssp EESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCC-EEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCE-EEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence 49999999999999999999999999988543 2466 99999999999999994 99999998 8888875
No 353
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=117.95 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=68.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeE--------EEEEcc-----CCCeEEEEEcCCHHHHHHHHHHhcCCcc
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI 308 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~--------v~i~~~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l 308 (448)
++++|| |+||+.++|+++|+++|++||.|.+ |++..+ .+|+ |||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 356777 8999999999999999999999998 777543 2455 99999999999999999999999
Q ss_pred CCCceeEEEEEEeeCCc
Q 013150 309 YDGGFCKLHISYSRHTD 325 (448)
Q Consensus 309 ~g~~~~~i~v~~ak~~~ 325 (448)
.|+ .|+|+|++.+.
T Consensus 83 ~g~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGN---PIKVSFATRRA 96 (116)
Confidence 999 99999987654
No 354
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=107.90 Aligned_cols=75 Identities=11% Similarity=0.199 Sum_probs=65.7
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
..+|| |+|||.++|+++|+++|+.| .|.+|+|..++ +|+ |||+|.+.++|++|+ .|||..|.|+ .|+|
T Consensus 16 ~~~v~--V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V 87 (109)
T 2dnn_A 16 DLYVS--VHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGN-GLVKFLSPQDTFEAL-KRNRMLMIQR---YVEV 87 (109)
T ss_dssp HHEEE--EECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSE-EEEECSSHHHHHHHH-HTTTEEETTE---EEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeE-EEEEECCHHHHHHHH-hcCCCeECCe---EEEE
Confidence 45677 99999999999999999999 89999996432 566 999999999999999 6999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
..+....
T Consensus 88 ~~a~~~~ 94 (109)
T 2dnn_A 88 SPATERQ 94 (109)
T ss_dssp EECCHHH
T ss_pred EECCccc
Confidence 8886543
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1e-12 Score=106.33 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=66.0
Q ss_pred CCCcEEEEEEeCCCccCC-----------HHHHHHHHhhcCCeeEEEEEcc-CCCeEEEEEcCCHHHHHHHHHHhcCCcc
Q 013150 241 PESNVLLASIENMQYAVT-----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCI 308 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt-----------~~~L~~~F~~fG~I~~v~i~~~-~~g~~afV~f~~~e~A~~Ai~~lng~~l 308 (448)
.++++|+ |.||....+ +++|+++|++||.|.+|.|..+ .+|+ |||+|.+.++|.+|++.|||..|
T Consensus 13 ~~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEE-EEEEECCHHHHHHHHHHcCCCEE
Confidence 3577888 889843322 5899999999999999977543 3576 99999999999999999999999
Q ss_pred CCCceeEEEEEEeeCCc
Q 013150 309 YDGGFCKLHISYSRHTD 325 (448)
Q Consensus 309 ~g~~~~~i~v~~ak~~~ 325 (448)
.|+ +|+|+|++...
T Consensus 90 ~gr---~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGR---QITAQAWDGTT 103 (112)
T ss_dssp TTE---ECEEEECCSCC
T ss_pred CCc---EEEEEEeCCCC
Confidence 998 99999987653
No 356
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.41 E-value=4.8e-13 Score=106.78 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=65.2
Q ss_pred CCcEEEEEEeCCC--ccCC--------HHHHHHHHhhcCCeeEEEEEcc-------CCCeEEEEEcCCHHHHHHHHHHhc
Q 013150 242 ESNVLLASIENMQ--YAVT--------LDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 242 ~~~~l~v~v~nl~--~~vt--------~~~L~~~F~~fG~I~~v~i~~~-------~~g~~afV~f~~~e~A~~Ai~~ln 304 (448)
++++|+ +.|+- .++. +++|+++|++||.|++|+|.+. .+|+ |||+|.+.++|.+|++.||
T Consensus 4 ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE-EEEEESSHHHHHHHHHHHT
T ss_pred CCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE-EEEEECCHHHHHHHHHHhC
Confidence 578888 77873 2332 3689999999999999999653 2465 9999999999999999999
Q ss_pred CCccCCCceeEEEEEEeeCCc
Q 013150 305 GHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 305 g~~l~g~~~~~i~v~~ak~~~ 325 (448)
|+.+.|+ .|+|+|+....
T Consensus 81 G~~f~GR---~i~v~~~~~~~ 98 (105)
T 3v4m_A 81 GRKFANR---VVVTKYCDPDS 98 (105)
T ss_dssp TCEETTE---ECEEEEECHHH
T ss_pred CCEeCCC---EEEEEEeCHHH
Confidence 9999999 99999987654
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=103.45 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=65.4
Q ss_pred CccEEEEcCCC-------CCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcE
Q 013150 16 PSKVLHLRNLP-------WECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKT 88 (448)
Q Consensus 16 ~s~~l~V~nLp-------~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~ 88 (448)
..++|.|+-.. .++||++|+++|++||+|.+|.|. +++||||||+|.+.++|++||+.++ .+.|+.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~------~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEV------GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCC------BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcC------CCCCCe
Confidence 36678887765 458999999999999999999986 5789999999999999999999855 367999
Q ss_pred EEEeeccccc
Q 013150 89 VYLQYSNRQE 98 (448)
Q Consensus 89 i~v~~s~~~~ 98 (448)
|.|.|++.+.
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 358
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=5.4e-13 Score=108.54 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCC--C---CCHHHHHHhhcCCCceEEEEeecC--------CCcceEEEEecCHHHHHHHHHHhhcCCC
Q 013150 14 QPPSKVLHLRNLPW--E---CTEEELIELGKPFGKVVNTKCNVG--------ANRNQAFIEFADLNQAIAMISYYASSSE 80 (448)
Q Consensus 14 ~~~s~~l~V~nLp~--~---~te~~L~~~F~~fG~I~~v~i~~~--------~~kg~afVeF~~~e~A~~Al~~~~~~~~ 80 (448)
.++|++|+|+|+-. + -.++||++.|++||+|.+|+|... +++|+|||+|.+.++|.+|++.||
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln---- 92 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN---- 92 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT----
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC----
Confidence 34899999999842 2 247999999999999999999432 357999999999999999999999
Q ss_pred CceeeCcEEEEeeccccccc
Q 013150 81 PAQVRGKTVYLQYSNRQEIV 100 (448)
Q Consensus 81 ~~~~~g~~i~v~~s~~~~~~ 100 (448)
+..++||.|.|.|.......
T Consensus 93 Gr~f~GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQERFD 112 (118)
T ss_dssp TCEETTEECEEEEECHHHHH
T ss_pred CCEECCcEEEEEEcChHhcc
Confidence 66999999999998765543
No 359
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2e-13 Score=114.57 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
..++|| |.|||.++|+++|+++|++|| |++|+|+.++ +|+ |||+|.+.++|++|| .||+..|.++ .|+
T Consensus 45 ~~~~lf--V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGf-aFV~F~~~e~A~~Al-~~~g~~l~gR---~i~ 116 (139)
T 2hgn_A 45 TGHCVH--MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGE-ADVEFATHEEAVAAM-SKDRANMQHR---YIE 116 (139)
T ss_dssp CCCCEE--CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCC-CEEECSHHHHHHHHT-TCCSCSSSSC---CCC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceE-EEEEeCCHHHHHHHH-hhCCCEECCE---EEE
Confidence 356677 999999999999999999999 7799886543 466 999999999999999 7999999999 999
Q ss_pred EEEeeCCc
Q 013150 318 ISYSRHTD 325 (448)
Q Consensus 318 v~~ak~~~ 325 (448)
|.++....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 98876544
No 360
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=1.7e-12 Score=104.91 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCCccEEEEcCCCCCCC----------HHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCce
Q 013150 14 QPPSKVLHLRNLPWECT----------EEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQ 83 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~t----------e~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~ 83 (448)
..+|++|.|+|+=..-. ++||++.|++||.|.+|.|.+...+|+|||+|.+.++|++|++.|| +..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~ln----G~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALH----GRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHT----TCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhC----CCE
Confidence 45799999999844222 3578899999999999999776679999999999999999999999 669
Q ss_pred eeCcEEEEeecccccc
Q 013150 84 VRGKTVYLQYSNRQEI 99 (448)
Q Consensus 84 ~~g~~i~v~~s~~~~~ 99 (448)
++||.|.|.|+.....
T Consensus 80 f~GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 80 FAGKMITAAYVPLPTY 95 (114)
T ss_dssp ETTEECEEEEECHHHH
T ss_pred ECCEEEEEEEEcHHHH
Confidence 9999999999876543
No 361
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=4.4e-13 Score=106.60 Aligned_cols=75 Identities=11% Similarity=0.243 Sum_probs=66.5
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
+++|| |+||+.++|+++|+++|+.||.|.++++..++ +|+ |||+|.+.++|++|++ ||..+.|+ .|.|
T Consensus 9 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v 80 (102)
T 2xs2_A 9 PNTVF--VGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGY-GFVSFYNDVDVQKIVE--SQINFHGK---KLKL 80 (102)
T ss_dssp EEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence 56777 89999999999999999999999999997653 344 9999999999999999 99999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9987643
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=1.3e-12 Score=106.33 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=65.3
Q ss_pred CCcEEEEEEeCCCc--cC---CHHHHHHHHhhcCCeeEEEEEccCC---------CeEEEEEcCCHHHHHHHHHHhcCCc
Q 013150 242 ESNVLLASIENMQY--AV---TLDVLHMVFSAFGPVQKIAMFDKNG---------GLQALIQYPDVQTAVVAKEALEGHC 307 (448)
Q Consensus 242 ~~~~l~v~v~nl~~--~v---t~~~L~~~F~~fG~I~~v~i~~~~~---------g~~afV~f~~~e~A~~Ai~~lng~~ 307 (448)
++++|+ +.|+-. ++ -+++|++.|++||.|.+|+|.+.+. |+ +||+|.+.++|.+|++.|||+.
T Consensus 19 ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~-~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE-EEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE-EEEEECCHHHHHHHHHHHCCCE
Confidence 578888 778842 22 2689999999999999999965432 54 9999999999999999999999
Q ss_pred cCCCceeEEEEEEeeCCc
Q 013150 308 IYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 308 l~g~~~~~i~v~~ak~~~ 325 (448)
+.|+ .|+|+|+....
T Consensus 96 f~GR---~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGR---KVVAEVYDQER 110 (118)
T ss_dssp ETTE---ECEEEEECHHH
T ss_pred ECCc---EEEEEEcChHh
Confidence 9999 99999987643
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=103.07 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=57.8
Q ss_pred ccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 255 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 255 ~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
..+|+++|+++|++||.|.+|+|....+|| |||+|.+.++|.+|++.+++ +.++ +|+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGf-aFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGT-AVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSE-EEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCE-EEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence 468999999999999999999998777786 99999999999999999766 5677 99999987654
No 364
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-13 Score=109.88 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCe----eEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I----~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
...+|| |+|||.++|+++|+++|+.||.| .+|+|..++ +|+ |||+|.+.++|++|++. |+..|.++
T Consensus 22 ~~~~v~--V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~-aFV~F~~~~~A~~Al~~-~~~~l~gR-- 95 (123)
T 2dha_A 22 NQVIVR--MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGD-AFVLFACEEYAQNALRK-HKDLLGKR-- 95 (123)
T ss_dssp SCCEEE--ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEE-EEECCSSHHHHHHHHTT-TTEESSSC--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHHh-CCCeeCCe--
Confidence 356777 99999999999999999999986 688886543 355 99999999999999996 99999998
Q ss_pred eEEEEEEeeCCccc
Q 013150 314 CKLHISYSRHTDLS 327 (448)
Q Consensus 314 ~~i~v~~ak~~~~~ 327 (448)
.|+|..+..++..
T Consensus 96 -~i~V~~a~~~e~~ 108 (123)
T 2dha_A 96 -YIELFRSTAAEVQ 108 (123)
T ss_dssp -EECCEEECHHHHH
T ss_pred -EEEEEECCHHHHH
Confidence 9999998766543
No 365
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=7.1e-13 Score=109.02 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCee--EEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeE
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 315 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~--~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~ 315 (448)
..++|| |+|||.++|+++|+++|+.| .|+ +|+|..++ +|+ |||+|.+.++|++|++ +++..|.|+ .
T Consensus 41 ~~~~lf--VgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf-aFV~F~~~e~A~~Al~-~~~~~l~gR---~ 112 (126)
T 2hgm_A 41 NDGFVR--LRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE-AFVQFASQELAEKALG-KHKERIGHR---Y 112 (126)
T ss_dssp SCCEEE--EECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSE-EEEEESSTTHHHHHHT-TTTCCBTTB---C
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-HCCCEECCE---E
Confidence 356677 99999999999999999999 677 88886432 466 9999999999999999 478999998 9
Q ss_pred EEEEEeeCCc
Q 013150 316 LHISYSRHTD 325 (448)
Q Consensus 316 i~v~~ak~~~ 325 (448)
|+|..+..++
T Consensus 113 I~V~~a~~~e 122 (126)
T 2hgm_A 113 IEVFKSSQEE 122 (126)
T ss_dssp CCCEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999886654
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=3.1e-12 Score=103.31 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=65.0
Q ss_pred CCcEEEEEEeCCCccCC----------HHHHHHHHhhcCCeeEEEEEccC-CCeEEEEEcCCHHHHHHHHHHhcCCccCC
Q 013150 242 ESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYD 310 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt----------~~~L~~~F~~fG~I~~v~i~~~~-~g~~afV~f~~~e~A~~Ai~~lng~~l~g 310 (448)
++++|. +.|+-..-+ +++|++.|++||.|++|+|.+.. +|+ |||+|.+.++|.+|++.|||+.+.|
T Consensus 6 ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~-~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGN-VYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCC-EEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 466777 777743222 35789999999999999996654 576 9999999999999999999999999
Q ss_pred CceeEEEEEEeeCCc
Q 013150 311 GGFCKLHISYSRHTD 325 (448)
Q Consensus 311 ~~~~~i~v~~ak~~~ 325 (448)
+ .|+|+|+....
T Consensus 83 R---~i~v~~~~~~~ 94 (114)
T 3s6e_A 83 K---MITAAYVPLPT 94 (114)
T ss_dssp E---ECEEEEECHHH
T ss_pred E---EEEEEEEcHHH
Confidence 9 99999997654
No 367
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-12 Score=102.68 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=59.2
Q ss_pred CCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEc--------cCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 242 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 242 ~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~--------~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
.+++|| |+||+.++|+++|+++|++||.|. ++++. ..+|+ |||+|.+.++|++|++.|++ +.|+
T Consensus 7 ~~~~lf--VgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~-aFV~f~~~~~a~~Ai~~~~~--~~G~-- 78 (114)
T 2dnl_A 7 GSRKVF--VGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGY-AFLLFQEESSVQALIDACLE--EDGK-- 78 (114)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSE-EEECCSSHHHHHHHHHHSEE--ETTE--
T ss_pred CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccE-EEEEECCHHHHHHHHHhhhh--cCCc--
Confidence 367788 899999999999999999999999 76643 23566 99999999999999999954 5666
Q ss_pred eEEEEEEee
Q 013150 314 CKLHISYSR 322 (448)
Q Consensus 314 ~~i~v~~ak 322 (448)
.|.+..++
T Consensus 79 -~~~~~~~~ 86 (114)
T 2dnl_A 79 -LYLCVSSP 86 (114)
T ss_dssp -EEEEECCS
T ss_pred -EEEeccCC
Confidence 67666554
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=5.4e-13 Score=106.30 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=57.8
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCceEEEEeec---CCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeC
Q 013150 22 LRNLPWECTEEELIELG------------KPFGKVVNTKCNV---GANRNQAFIEFADLNQAIAMISYYASSSEPAQVRG 86 (448)
Q Consensus 22 V~nLp~~~te~~L~~~F------------~~fG~I~~v~i~~---~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g 86 (448)
+.||+.++|+++|++.| ++||+|.+|+|.. ++++|||||+|.+.++|++|++.+| +..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ln----g~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN----NRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHT----TCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHC----CCEECC
Confidence 44555666777776666 9999999999954 4579999999999999999999999 668999
Q ss_pred cEEEEeec
Q 013150 87 KTVYLQYS 94 (448)
Q Consensus 87 ~~i~v~~s 94 (448)
|.|.|.|+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999886
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=7.8e-13 Score=105.37 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=57.2
Q ss_pred EeCCCccCCHHHHHHHH------------hhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCce
Q 013150 250 IENMQYAVTLDVLHMVF------------SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 313 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F------------~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~ 313 (448)
+.+|+..+++++|++.| ++||.|++|+|.+++ +|+ |||+|.+.++|.+|++.|||..+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~-~fV~f~~~~~A~~A~~~lng~~~~Gr-- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ-- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEE-EEEEECCHHHHHHHHHHHCCCEECCE--
Confidence 34566667777666555 999999999997653 465 99999999999999999999999999
Q ss_pred eEEEEEEe
Q 013150 314 CKLHISYS 321 (448)
Q Consensus 314 ~~i~v~~a 321 (448)
+|+|+|+
T Consensus 97 -~i~v~~s 103 (104)
T 1jmt_A 97 -PIHAELS 103 (104)
T ss_dssp -ECCEEEC
T ss_pred -EEEEEEc
Confidence 9999996
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=4.8e-12 Score=121.57 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=66.0
Q ss_pred CCCcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccC---CCceeEEE
Q 013150 241 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY---DGGFCKLH 317 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~---g~~~~~i~ 317 (448)
.++++|||.+++|+..+|+++|+++|++||.|.+|++... +|| |||+|.+.++|++||+.|||..+. |+ ...|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-kgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~~g~-~~~ly 92 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITLY 92 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-CSE-EEEEESSHHHHHHHHHHTTTCEEECTTSC-EEECE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCccccccCC-ceEEE
Confidence 4688899433347889999999999999999999988764 476 999999999999999999999884 33 23688
Q ss_pred EEEeeC
Q 013150 318 ISYSRH 323 (448)
Q Consensus 318 v~~ak~ 323 (448)
|+|++.
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 898853
No 371
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.3e-12 Score=101.99 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=63.3
Q ss_pred cEEEEEEeCC----CccCCHHHHHHHHhhcCCeeEEEEEccC-----CCeEEEEEcCC----HHH----HHHHHH--Hhc
Q 013150 244 NVLLASIENM----QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPD----VQT----AVVAKE--ALE 304 (448)
Q Consensus 244 ~~l~v~v~nl----~~~vt~~~L~~~F~~fG~I~~v~i~~~~-----~g~~afV~f~~----~e~----A~~Ai~--~ln 304 (448)
+.|+ |+|| +..+++++|+++|+.||+|.+++++.+. +|| |||+|.| .++ |.+|+. .||
T Consensus 3 ~kI~--VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf-gfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIV--VYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV-YLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEE--EEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE-EEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEE--EeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE-EEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 3466 8899 9999999999999999999999996654 466 9999996 333 889988 899
Q ss_pred CCccCCCceeEEEEEEeeCC
Q 013150 305 GHCIYDGGFCKLHISYSRHT 324 (448)
Q Consensus 305 g~~l~g~~~~~i~v~~ak~~ 324 (448)
|..|.|+ +|+|.+-+..
T Consensus 80 g~~I~Gr---~irV~ln~~g 96 (136)
T 2j8a_A 80 GCFIMGF---KFEVILNKHS 96 (136)
T ss_dssp CEEETTE---EEEEEECCTT
T ss_pred CCeecCc---EEEEEECccc
Confidence 9999999 9999997664
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=1.5e-11 Score=109.37 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=64.3
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC----CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~----~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
.++|| |+|||.++|+++|+++|++||.|.+|++.... +|+ |||+|.+.++|.+|++.++ ..+.|+ .|+|
T Consensus 109 ~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~-aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V 181 (193)
T 2voo_A 109 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVETPG-QKYKET---DLLI 181 (193)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESSHHHHHHHHHCTT-CEETTE---ECEE
T ss_pred cCEEE--ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHhCC-CeECCE---EEEE
Confidence 46788 89999999999999999999999999997532 355 9999999999999998665 488998 9999
Q ss_pred EEeeC
Q 013150 319 SYSRH 323 (448)
Q Consensus 319 ~~ak~ 323 (448)
.|++.
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 98654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.1e-11 Score=90.13 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=62.5
Q ss_pred CCCcEEEEEEeCCCc--c-CC---HHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCcee
Q 013150 241 PESNVLLASIENMQY--A-VT---LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 314 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~--~-vt---~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~ 314 (448)
++..+++|.+.+-.. + .+ ..+|.+.|+.||+|+.+++..++ +||+|.+.++|.+||+ |||..+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr--- 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR--- 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE---
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe---
Confidence 456788877755211 2 23 25789999999999999998754 9999999999999999 999999999
Q ss_pred EEEEEEeeCC
Q 013150 315 KLHISYSRHT 324 (448)
Q Consensus 315 ~i~v~~ak~~ 324 (448)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.4e-11 Score=96.67 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecC-HHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 14 QPPSKVLHLRNLPWE-CTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFAD-LNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~-~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~-~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
-++...|||+||+.+ +++++|+++|++||+|..|.+..+ ...|||+|.+ .++|.+|++.++. .+..|.|..+.+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~--~~~~i~g~~~~~ 90 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANN--GNLQLRNKEVTW 90 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTT--SCBCTTSSSEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhc--CCcEEeCcEEEE
Confidence 457899999999999 999999999999999999999877 4579999999 8999999999874 478889888887
Q ss_pred eeccc
Q 013150 92 QYSNR 96 (448)
Q Consensus 92 ~~s~~ 96 (448)
.....
T Consensus 91 evL~G 95 (121)
T 1owx_A 91 EVLEG 95 (121)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 65543
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.2e-10 Score=85.10 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCCccEEEEcCCCC----CCCH----HHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceee
Q 013150 14 QPPSKVLHLRNLPW----ECTE----EELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVR 85 (448)
Q Consensus 14 ~~~s~~l~V~nLp~----~~te----~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~ 85 (448)
.+|.-||+|.-.+. +.-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+||+ |+ +..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mn----G~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LN----GKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GT----TCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cC----CeEeC
Confidence 57888999988772 3444 6788999999999999998653 9999999999999999 88 67999
Q ss_pred CcEEEEeecccc
Q 013150 86 GKTVYLQYSNRQ 97 (448)
Q Consensus 86 g~~i~v~~s~~~ 97 (448)
||.|+|++++..
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999987653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.3e-09 Score=88.01 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=65.3
Q ss_pred CCCcEEEEEEeCCCcc-CCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCC-HHHHHHHHHHhc--CCccCCCceeEE
Q 013150 241 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFCKL 316 (448)
Q Consensus 241 ~~~~~l~v~v~nl~~~-vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~-~e~A~~Ai~~ln--g~~l~g~~~~~i 316 (448)
..+++|+ |.||+.+ ++.++|+++|+.||.|..|.+..+.. .|||+|.+ .++|..|+++|| |..|.|. .+
T Consensus 16 ~~G~il~--v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~ 88 (121)
T 1owx_A 16 KIGCLLK--FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK---EV 88 (121)
T ss_dssp CCCCEEE--EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred cCCeEEE--EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence 4577777 8899999 99999999999999999999988775 59999999 899999999995 7788887 77
Q ss_pred EEEEee
Q 013150 317 HISYSR 322 (448)
Q Consensus 317 ~v~~ak 322 (448)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776643
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=7e-10 Score=84.24 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=60.5
Q ss_pred CCCCCcEEEEEEeCCC---cc-CCH---HHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCC
Q 013150 239 LEPESNVLLASIENMQ---YA-VTL---DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 311 (448)
Q Consensus 239 ~~~~~~~l~v~v~nl~---~~-vt~---~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~ 311 (448)
..++..+++|.+.+-. .+ .++ .+|.+.|+.||+|+.+++..++ +||+|.+.++|.+||+ |||..+.|+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 3456788887765421 11 232 4688999999999999998764 9999999999999999 999999999
Q ss_pred ceeEEEEEEe
Q 013150 312 GFCKLHISYS 321 (448)
Q Consensus 312 ~~~~i~v~~a 321 (448)
.|+|++.
T Consensus 86 ---~L~V~~k 92 (95)
T 1ufw_A 86 ---AVKISGP 92 (95)
T ss_dssp ---EEEEECC
T ss_pred ---EEEEecc
Confidence 9999874
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.6e-09 Score=81.10 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=62.7
Q ss_pred CCCCCccEEEEcCCCCC-----CCH----HHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCc
Q 013150 12 YTQPPSKVLHLRNLPWE-----CTE----EELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPA 82 (448)
Q Consensus 12 ~~~~~s~~l~V~nLp~~-----~te----~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~ 82 (448)
.-.+|.-||+|.-++.+ .-. .+|.+.|+.||+|..+++..++ +||+|.+.++|.+||+ |+ +.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ld----G~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VD----GM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GG----GS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cC----Ce
Confidence 44678999999988743 223 5688899999999999998663 9999999999999999 88 77
Q ss_pred eeeCcEEEEeec
Q 013150 83 QVRGKTVYLQYS 94 (448)
Q Consensus 83 ~~~g~~i~v~~s 94 (448)
.++||.|+|++.
T Consensus 81 ~v~Gr~L~V~~k 92 (95)
T 1ufw_A 81 KVKGRAVKISGP 92 (95)
T ss_dssp EETTEEEEEECC
T ss_pred eeCCeEEEEecc
Confidence 999999999864
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.6e-08 Score=74.74 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=63.6
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhc-----CCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~f-----G~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
+++- +.|||+.|++..|+.+.++| |.|+++.+..+.. + |+|+|.|...|.+|..+|||..|.|+ +|++
T Consensus 22 rtia--L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-G-Aivef~d~~~AgKasLaL~G~ef~gr---~Lr~ 94 (117)
T 2l9w_A 22 TLIC--LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-G-AIIIFRDSKFAAKMLMILNGSQFQGK---VIRS 94 (117)
T ss_dssp SCEE--EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-E-EEEECSCHHHHHHHHHHHSSEEETTE---EEEE
T ss_pred cEEE--EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-c-eEEEEccchhhHHHHhhcCCeeecCe---EEEe
Confidence 3444 78999999999999999999 9999999998884 4 99999999999999999999999998 9988
Q ss_pred EE
Q 013150 319 SY 320 (448)
Q Consensus 319 ~~ 320 (448)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=2.9e-08 Score=90.24 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=56.0
Q ss_pred CHHHHHHHHhhcCCeeEEEEEccC---------CCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEEeeCCc
Q 013150 258 TLDVLHMVFSAFGPVQKIAMFDKN---------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 325 (448)
Q Consensus 258 t~~~L~~~F~~fG~I~~v~i~~~~---------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ak~~~ 325 (448)
.+++|++.|++||.|.+++|.+.. +|+ +||+|.+.++|.+|++.|||+.+.|+ .|+++|+....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~-~fv~f~~~~~a~~a~~~l~gr~~~gr---~i~~~~~~~~~ 214 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRWFAGR---KVVAEVYDQER 214 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEECCHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeE-EEEEECCHHHHHHHHHHhcCceECCe---EEEEEEcCHHH
Confidence 468899999999999999996322 254 99999999999999999999999999 99999986544
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=4.5e-08 Score=88.89 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCCccEEEEcCCCC-----CCCHHHHHHhhcCCCceEEEEee----c----CCCcceEEEEecCHHHHHHHHHHhhcCCC
Q 013150 14 QPPSKVLHLRNLPW-----ECTEEELIELGKPFGKVVNTKCN----V----GANRNQAFIEFADLNQAIAMISYYASSSE 80 (448)
Q Consensus 14 ~~~s~~l~V~nLp~-----~~te~~L~~~F~~fG~I~~v~i~----~----~~~kg~afVeF~~~e~A~~Al~~~~~~~~ 80 (448)
...++.+.+.|+-. +-.+++|++.|++||+|.+++|. . ++++|++||+|.+.++|++|++.++
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~---- 196 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN---- 196 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT----
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc----
Confidence 33456666666432 44678999999999999999984 2 2678999999999999999999999
Q ss_pred CceeeCcEEEEeeccccccc
Q 013150 81 PAQVRGKTVYLQYSNRQEIV 100 (448)
Q Consensus 81 ~~~~~g~~i~v~~s~~~~~~ 100 (448)
+..++||.|.+.|.......
T Consensus 197 gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHH
T ss_pred CceECCeEEEEEEcCHHHhh
Confidence 66999999999998765543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-06 Score=67.56 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCCCCCcHHHHHHHhccc-----CceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCC
Q 013150 110 GNVLLVTIEGTDARLVSIDVLHLVFSAF-----GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 184 (448)
Q Consensus 110 ~~~~~v~V~nlp~~~~~~e~l~~~f~~~-----G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~ 184 (448)
.+++-|+ ||| ++++++.++.+.+.+ |.|.+|.+..+..+ |+|+|.+..+|-+|.-.|+|.+
T Consensus 21 ~rtiaL~--~ip-DtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G--Aivef~d~~~AgKasLaL~G~e--------- 86 (117)
T 2l9w_A 21 ETLICLF--PLS-DKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG--AIIIFRDSKFAAKMLMILNGSQ--------- 86 (117)
T ss_dssp TSCEEEE--CCC-TTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE--EEEECSCHHHHHHHHHHHSSEE---------
T ss_pred CcEEEEe--cCC-CCCCHHHHHHHHhhhhccCccceeEEEEecCCCc--eEEEEccchhhHHHHhhcCCee---------
Confidence 4667777 997 899999999999999 99999999887633 9999999999999999999999
Q ss_pred CCCeEEEEE
Q 013150 185 MGPCTLRIT 193 (448)
Q Consensus 185 ~~~~~l~v~ 193 (448)
+.+++|++.
T Consensus 87 f~gr~Lr~g 95 (117)
T 2l9w_A 87 FQGKVIRSG 95 (117)
T ss_dssp ETTEEEEEE
T ss_pred ecCeEEEec
Confidence 779999986
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=8.7e-06 Score=62.87 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=63.5
Q ss_pred cEEEEEEeCCCccC-CH----HHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEE
Q 013150 244 NVLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 318 (448)
Q Consensus 244 ~~l~v~v~nl~~~v-t~----~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v 318 (448)
++|+ +.||+.+| +. +.++++|..|+++.....++.=+ ..-|.|.+.++|.+|...|++..+.|+ .|+|
T Consensus 6 ntLi--itnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~ 78 (104)
T 1wey_A 6 SGLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKL 78 (104)
T ss_dssp CEEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEE
T ss_pred ceEE--EecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEE
Confidence 4577 67887665 32 57799999999999988887765 589999999999999999999999998 9999
Q ss_pred EEeeCCc
Q 013150 319 SYSRHTD 325 (448)
Q Consensus 319 ~~ak~~~ 325 (448)
.|+....
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997443
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=8e-05 Score=57.20 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=59.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCC-----CceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEE
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPF-----GKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVY 90 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~f-----G~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~ 90 (448)
-.++|.|.|||.++.++.|.-+|+.- |+|.++.... +-|+|+|.+.+.|++.|+.- ...+.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k~-----~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQA-----DHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTCS-----CCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcCC-----cceecCeEEE
Confidence 45789999999999999999999872 8999998753 77999999999999999862 3478888888
Q ss_pred Eeec
Q 013150 91 LQYS 94 (448)
Q Consensus 91 v~~s 94 (448)
|.-.
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8643
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00023 Score=53.98 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=46.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
...+++| ++|+.....||.++|+.||-|. |+.+.+ .-|||.|.+.+.|..|++.+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET---TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 3456777 9999999999999999999664 555554 559999999999999999764
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00018 Score=55.54 Aligned_cols=76 Identities=14% Similarity=0.074 Sum_probs=62.8
Q ss_pred ccEEEEcCCCCCC-CH----HHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhhcCCCCceeeCcEEEE
Q 013150 17 SKVLHLRNLPWEC-TE----EELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYL 91 (448)
Q Consensus 17 s~~l~V~nLp~~~-te----~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~~~~~~~~~~g~~i~v 91 (448)
..+|+|.||+.+| +. +.++++|..|+++.....+ +|=.-.-|.|.+.++|.+|-..++ +..++|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l--kSFRRirv~F~~~~~A~~AR~~Lh----~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF--KSFKRVRINFSNPLSAADARLRLH----KTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE--TTTTEEEEECSSTTHHHHHHHTST----TSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec--CcceEEEEEeCChHHHHHHHHHhc----cceecCceeEE
Confidence 4679999998866 32 5678899999999887776 334458999999999999999998 67899999999
Q ss_pred eeccccc
Q 013150 92 QYSNRQE 98 (448)
Q Consensus 92 ~~s~~~~ 98 (448)
.|+....
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9987544
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00065 Score=53.94 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=53.0
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
.+|+|.+.+.. ..+.+...|++||+|++....... -+-.|+|++..+|++|+. .||..|.+. +.|-|..
T Consensus 25 ~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~~--NWihI~Y~s~~~A~rAL~-kNG~ii~g~--~mIGV~p 93 (119)
T 1wwh_A 25 TWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNTG--NWMHIRYQSKLQARKALS-KDGRIFGES--IMIGVKP 93 (119)
T ss_dssp GEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSSS--SEEEEEESSHHHHHHHHT-TTTCEETTT--EECEEEE
T ss_pred CEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCCC--CeEEEEeCCHHHHHHHHH-hCCeEecCC--EEEEEEE
Confidence 34557788766 467788889999999998873332 269999999999999999 699998775 3444544
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.34 E-value=0.00029 Score=53.58 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=46.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
+.+++| ++|......||.++|+.||-|. |+.+.. .-|||.|.+.+.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 345777 9999999999999999999554 555554 459999999999999999764
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.26 E-value=0.00096 Score=50.55 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=41.6
Q ss_pred CCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc
Q 013150 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 252 nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln 304 (448)
+.|.+....+|.++|+.||.| .|+-+.+- .|||.|.+.+.|..|+..++
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 999999999999999999965 34444443 59999999999999999885
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.21 E-value=0.0016 Score=49.38 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=50.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCC------cceEEEEecCHHHHHHHHHHhhc
Q 013150 18 KVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN------RNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 18 ~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~------kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
..|.||+||+++||+++.+.++...++.......|+. -.-|||.|.+.|++....+.+++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 4689999999999999999999998877666655542 24599999999999999999985
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0045 Score=47.47 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=52.8
Q ss_pred CcEEEEEEeCCCccCCHHHHHHHHhh-----cCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEE
Q 013150 243 SNVLLASIENMQYAVTLDVLHMVFSA-----FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 317 (448)
Q Consensus 243 ~~~l~v~v~nl~~~vt~~~L~~~F~~-----fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~ 317 (448)
.+.+. |.|||..+++|.|.-.|+. =|.|.+++... + .|+|+|.+.+.|++.++. .-+.|.+- .|.
T Consensus 8 ~~~I~--V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~-~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls 77 (104)
T 2dhx_A 8 GVAVE--VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---C-GGVLTFREPADAERVLAQ-ADHELHGA---QLS 77 (104)
T ss_dssp CCEEE--EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---T-EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred ccEEE--EECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---C-cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence 45566 8899999999999999987 26899998877 2 499999999999998774 13345555 666
Q ss_pred EEE
Q 013150 318 ISY 320 (448)
Q Consensus 318 v~~ 320 (448)
|.-
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 643
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.79 E-value=0.01 Score=44.88 Aligned_cols=75 Identities=12% Similarity=0.264 Sum_probs=58.9
Q ss_pred EeCCCccCCHHHHHHHHhhcCCeeEEEEEccCC------CeEEEEEcCCHHHHHHHHHHhcCCccCCC-c-eeEEEEEEe
Q 013150 250 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG------GLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKLHISYS 321 (448)
Q Consensus 250 v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~------g~~afV~f~~~e~A~~Ai~~lng~~l~g~-~-~~~i~v~~a 321 (448)
|.+||...|++++++..+.+..+........+. -..|+|.|.+.+++..-.+.++|..+.+. + ..+-.|+||
T Consensus 6 IRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~A 85 (91)
T 1uw4_A 6 IRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFA 85 (91)
T ss_dssp EEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEEC
T ss_pred EeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEc
Confidence 899999999999999999999887766655441 13599999999999999999999977553 2 234467777
Q ss_pred eCC
Q 013150 322 RHT 324 (448)
Q Consensus 322 k~~ 324 (448)
...
T Consensus 86 P~q 88 (91)
T 1uw4_A 86 PFQ 88 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.55 E-value=0.0029 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=41.4
Q ss_pred CCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhc
Q 013150 252 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 304 (448)
Q Consensus 252 nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~ln 304 (448)
+.|.+....+|.++|+.||.| .|+-+.+- .|||.|.+.+.|..|+..++
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 999999999999999999944 34445443 59999999999999999886
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.55 E-value=0.0066 Score=48.13 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRS 175 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~ 175 (448)
..+.|| +.| ... .+.+...|++||.|.+..... ..+.-.|+|.+..+|++|+. .||..
T Consensus 25 ~wVtVF--GFp-~~~-~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~-kNG~i 82 (119)
T 1wwh_A 25 TWVTVF--GFP-QAS-ASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALS-KDGRI 82 (119)
T ss_dssp GEEEEE--CCC-GGG-HHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHT-TTTCE
T ss_pred CEEEEE--CCC-HHH-HHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHH-hCCeE
Confidence 445555 996 444 445555999999999888733 44789999999999999999 58876
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.0095 Score=45.35 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=48.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCC------cceEEEEecCHHHHHHHHHHhhc
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGAN------RNQAFIEFADLNQAIAMISYYAS 77 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~------kg~afVeF~~~e~A~~Al~~~~~ 77 (448)
..|-.|.||.||+++||+++.+.++..=++.......|+. -.-|||.|.+.|+.....+.+++
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 4577899999999999999999888765543333333321 13499999999999999998884
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.09 E-value=0.0023 Score=63.47 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=42.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHH
Q 013150 17 SKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISY 74 (448)
Q Consensus 17 s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~ 74 (448)
.|+|+|. .|..+++++|.++|++||.|.++...+. .+.||.|||.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHhc
Confidence 5889998 6999999999999999999999988643 346999999999999877664
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.51 E-value=0.0081 Score=59.53 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=39.4
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHH
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 301 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~ 301 (448)
+.++|. .+..+++.+|.+.|++||.|.++...+.+ |.+|.|+|++.+++..++.
T Consensus 54 rsv~v~---~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH---CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE---ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEE---cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 457754 36689999999999999999999888766 6679999999999987754
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.89 E-value=0.023 Score=45.63 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred CeEEEEEcCCCCCCCcHHHHHHHhcccCceEEE-EEec------------c-----CCCceEEEEeCCHHHHHHHHHHhC
Q 013150 111 NVLLVTIEGTDARLVSIDVLHLVFSAFGFVHKI-TTFE------------K-----TAGFQALVQFSDTETASSAKNALD 172 (448)
Q Consensus 111 ~~~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v-~~~~------------~-----~~~~~afVeF~~~e~A~~A~~~l~ 172 (448)
..+.|| +.| .......|. .|++||.|.+- ...+ + ..++...|+|++..+|.+|+. .|
T Consensus 8 ~~VtVF--GFp-~~~~~~VI~-~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 8 LAILVF--GYP-ETMANQVIA-YFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp CEEEEE--CCC-GGGHHHHHH-HHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred eEEEEE--ecC-HHHHHHHHH-HHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 345555 986 555555555 99999999662 2111 0 124567899999999999999 78
Q ss_pred CCCCCCcCCCCCCCCeEEEEEecC
Q 013150 173 GRSIPRYLLPENMGPCTLRITYSA 196 (448)
Q Consensus 173 g~~~~~~~~~~~~~~~~l~v~~s~ 196 (448)
|.. +.|.-|-|...+
T Consensus 83 G~i---------i~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAV---------FNGVLLGVIPYT 97 (132)
T ss_dssp TCE---------ETTEECEEEECC
T ss_pred CeE---------eCcEEEEEEECC
Confidence 877 567666666544
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.71 E-value=0.022 Score=45.83 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=50.8
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEE-EEc------------c-----CCCeEEEEEcCCHHHHHHHHHHhcCCccC
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD------------K-----NGGLQALIQYPDVQTAVVAKEALEGHCIY 309 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~-i~~------------~-----~~g~~afV~f~~~e~A~~Ai~~lng~~l~ 309 (448)
|.|.+.|.+ ....+.+.|++||.|++-. ..+ + .++.+.-|+|++..+|.+|+. -||..|.
T Consensus 10 VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~ 87 (132)
T 3p3d_A 10 ILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFN 87 (132)
T ss_dssp EEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEET
T ss_pred EEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeC
Confidence 446677544 4566777899999998721 110 0 012368999999999999998 8999887
Q ss_pred CCceeEEEEEEeeCC
Q 013150 310 DGGFCKLHISYSRHT 324 (448)
Q Consensus 310 g~~~~~i~v~~ak~~ 324 (448)
|- -|-|..-+..
T Consensus 88 G~---mIGV~Py~~~ 99 (132)
T 3p3d_A 88 GV---LLGVIPYTKD 99 (132)
T ss_dssp TE---ECEEEECCHH
T ss_pred cE---EEEEEECCHH
Confidence 74 7777776543
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.61 E-value=0.054 Score=41.21 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=54.0
Q ss_pred EEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccC------CCeEEEEEcCCHHHHHHHHHHhcCCccCCC--ceeEEEEE
Q 013150 248 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG--GFCKLHIS 319 (448)
Q Consensus 248 v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~------~g~~afV~f~~~e~A~~Ai~~lng~~l~g~--~~~~i~v~ 319 (448)
|-|.+||...|++++.+.++..=.+........+ .-..|+|.|.+.++...-.+..+|..+.+. ...+-.|+
T Consensus 12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE 91 (97)
T 2l08_A 12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVE 91 (97)
T ss_dssp EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEE
Confidence 3389999999999999888876554332222222 012499999999999999999999977543 23456677
Q ss_pred EeeC
Q 013150 320 YSRH 323 (448)
Q Consensus 320 ~ak~ 323 (448)
||..
T Consensus 92 ~APy 95 (97)
T 2l08_A 92 FAPF 95 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 7643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.47 E-value=0.68 Score=46.64 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=47.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 16 PSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 16 ~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
.+.+++|+ +|..+...+|.++|+.||.|. |+.+. ...|||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 45678887 999999999999999999754 55543 4569999999999999999986
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.40 E-value=2 Score=43.28 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=44.4
Q ss_pred cEEEEEEeCCCccCCHHHHHHHHhhcCCeeEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCC
Q 013150 244 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 306 (448)
Q Consensus 244 ~~l~v~v~nl~~~vt~~~L~~~F~~fG~I~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~ 306 (448)
.+++ +. .+..+...+|.++|+.||.| +|+.+.+. +|||.|.+.+.|..+++.++..
T Consensus 441 ~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 441 HVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred cEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 4555 44 67788999999999999964 55555544 5999999999999999999643
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.56 E-value=24 Score=25.81 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccCceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCC
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 174 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~ 174 (448)
+.|.|-|+|-.....|.+. .....|---.+..+. |+|.+.|.+.++...|+..|-+.
T Consensus 13 clikiinipqgtlkaevvl-avrhlgyefycdyid----gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVL-AVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CEEEEECCCTTCCHHHHHH-HHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEET
T ss_pred cEEEEEecCCCceeeeeEE-eehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHhc
Confidence 4456669986666666665 444666655666555 67999999999999999987654
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=66.83 E-value=35 Score=24.96 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEeecCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 14 QPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 14 ~~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
....+.+.|-|+|..+-..++.-.....|---.+..+ .|.|.|.|.+.++-.-|+..+-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi----dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----cCeeEEEecCChHHHHHHHHHH
Confidence 4456889999999999999999888888876666655 5789999999999999998753
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.00 E-value=4.7 Score=28.69 Aligned_cols=68 Identities=7% Similarity=0.075 Sum_probs=40.3
Q ss_pred EEEEEeCCCccCCHHHHHHHHhhcCCe-----eEEEEEccCCCeEEEEEcCCHHHHHHHHHHhcCCccCCCceeEEEEEE
Q 013150 246 LLASIENMQYAVTLDVLHMVFSAFGPV-----QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 320 (448)
Q Consensus 246 l~v~v~nl~~~vt~~~L~~~F~~fG~I-----~~v~i~~~~~g~~afV~f~~~e~A~~Ai~~lng~~l~g~~~~~i~v~~ 320 (448)
|++.++.- ..++..+|...++.-+.| =.|++.. . +.||+-.. +.|..+++.|++..+.|+ .++|+.
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~-~s~v~v~~-~~~~~~~~~l~~~~i~g~---~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMD---N-ASYVEILN-GKGPHVLKVMKNTTVKGK---QLKVNK 73 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECS---S-CEEEEECT-TCHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeC---C-cEEEEECH-HHHHHHHHHhccccCcCc---eEEEEE
Confidence 55444443 456666776666655544 3444433 3 48998755 458889999999999998 888876
Q ss_pred ee
Q 013150 321 SR 322 (448)
Q Consensus 321 ak 322 (448)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 406
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=45.04 E-value=7.1 Score=32.06 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCcceEEEEec
Q 013150 31 EEELIELGKPFGKVVNTKCNVGANRNQAFIEFA 63 (448)
Q Consensus 31 e~~L~~~F~~fG~I~~v~i~~~~~kg~afVeF~ 63 (448)
++|+.++|...|+|+... ..|||+||+-.
T Consensus 1 ~~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 467788999999987655 34899999975
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.79 E-value=41 Score=28.12 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=34.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHhh--cCCCceEEEEe-ecCCCcceEEEEecCHHH
Q 013150 19 VLHLRNLPW-E--------CTEEELIELG--KPFGKVVNTKC-NVGANRNQAFIEFADLNQ 67 (448)
Q Consensus 19 ~l~V~nLp~-~--------~te~~L~~~F--~~fG~I~~v~i-~~~~~kg~afVeF~~~e~ 67 (448)
++.|-|+|. . ....+|++.| +.|..+....+ ....+.|+|.|+|.+.-.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 467788876 1 4558999977 99988763333 223357899999988643
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=36.22 E-value=92 Score=21.59 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHHhcccC----ceEEEEEeccCCCceEEEEeCCHHHHHHHHHHhCCCCCCCcCCCCCCCCe
Q 013150 113 LLVTIEGTDARLVSIDVLHLVFSAFG----FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 188 (448)
Q Consensus 113 ~~v~V~nlp~~~~~~e~l~~~f~~~G----~v~~v~~~~~~~~~~afVeF~~~e~A~~A~~~l~g~~~~~~~~~~~~~~~ 188 (448)
++|-++.- +....-+.|..++...| .|-+|.+.. .+.||+-.. +.|..+++.|++.. +.++
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~---------i~g~ 67 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTT---------VKGK 67 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCC---------C---
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhcccc---------CcCc
Confidence 34444444 23344555665555544 456666655 368998654 45778899998877 6688
Q ss_pred EEEEEec
Q 013150 189 TLRITYS 195 (448)
Q Consensus 189 ~l~v~~s 195 (448)
.++|..+
T Consensus 68 ~~~v~~~ 74 (76)
T 2g0c_A 68 QLKVNKA 74 (76)
T ss_dssp CCCEEEC
T ss_pred eEEEEEC
Confidence 8877654
No 409
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=30.63 E-value=99 Score=27.11 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.4
Q ss_pred CeEEEEEe
Q 013150 187 PCTLRITY 194 (448)
Q Consensus 187 ~~~l~v~~ 194 (448)
+++|+|..
T Consensus 14 dKrV~V~L 21 (231)
T 3pgw_B 14 DYRMRCIL 21 (231)
T ss_pred CCeEEEEE
Confidence 33444443
No 410
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.39 E-value=50 Score=22.69 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=14.8
Q ss_pred CceEEEEeecCCCcceEEEEecCH
Q 013150 42 GKVVNTKCNVGANRNQAFIEFADL 65 (448)
Q Consensus 42 G~I~~v~i~~~~~kg~afVeF~~~ 65 (448)
|+|..|. ..+..+||.|.|-
T Consensus 28 GtV~kV~----~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVD----SAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEE----TTTTEEEEEETTT
T ss_pred eEEEEEe----cCCcEEEEEEccC
Confidence 7777665 3478899999763
No 411
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.55 E-value=56 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.6
Q ss_pred CceEEEEeecCCCcceEEEEecCH
Q 013150 42 GKVVNTKCNVGANRNQAFIEFADL 65 (448)
Q Consensus 42 G~I~~v~i~~~~~kg~afVeF~~~ 65 (448)
|+|++|. ..++.++|.|.|-
T Consensus 32 gtI~~V~----~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN----ILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEE----TTTTEEEEEETTT
T ss_pred eEEEEEc----cCCcEEEEEEccC
Confidence 6776655 4478999999763
No 412
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=24.43 E-value=82 Score=23.40 Aligned_cols=63 Identities=8% Similarity=-0.045 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHhhcCCCceEEEEe-----ecCCCcceEEEEec--CHHHHHHHHHHhhc
Q 013150 15 PPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKC-----NVGANRNQAFIEFA--DLNQAIAMISYYAS 77 (448)
Q Consensus 15 ~~s~~l~V~nLp~~~te~~L~~~F~~fG~I~~v~i-----~~~~~kg~afVeF~--~~e~A~~Al~~~~~ 77 (448)
+..+.|.|.-....+.+.-|-++.++||.-.+|.- +.+..-|.-+|++. +.++.++|++++..
T Consensus 18 ~~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 18 KDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp TTCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34556777766667888888899998886443332 33444577788887 46778888888863
No 413
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.60 E-value=63 Score=33.37 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=41.2
Q ss_pred cCCCCCCCHHHHHHhhc----CCCceEEEEee---cCCCcceEEEEecCHHHHHHHHHHhh
Q 013150 23 RNLPWECTEEELIELGK----PFGKVVNTKCN---VGANRNQAFIEFADLNQAIAMISYYA 76 (448)
Q Consensus 23 ~nLp~~~te~~L~~~F~----~fG~I~~v~i~---~~~~kg~afVeF~~~e~A~~Al~~~~ 76 (448)
+..+.+.+--||..+|- .+|.|+++.+. .-+.+.++++.|.+.++|.+++..+-
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 34566666678999883 78999998882 12346789999999999999998765
No 414
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.08 E-value=61 Score=22.93 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=15.1
Q ss_pred CceEEEEeecCCCcceEEEEecCH
Q 013150 42 GKVVNTKCNVGANRNQAFIEFADL 65 (448)
Q Consensus 42 G~I~~v~i~~~~~kg~afVeF~~~ 65 (448)
|+|..|. ..+..++|.|.|.
T Consensus 45 GTI~kV~----~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVD----SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE----TTTTEEEEEETTS
T ss_pred EEEEEec----cCCCEEEEEEcCC
Confidence 8887665 4478899999764
Done!