Query 013151
Match_columns 448
No_of_seqs 888 out of 4152
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xai_A ASB-9, ankyrin repeat a 100.0 2.6E-39 8.9E-44 295.2 24.2 190 235-425 3-193 (261)
2 3aji_A 26S proteasome non-ATPa 100.0 1.8E-39 6.1E-44 290.7 22.6 221 202-423 8-230 (231)
3 1oy3_D Transcription factor in 100.0 1E-39 3.5E-44 301.2 21.0 211 229-440 3-266 (282)
4 1yyh_A HN1;, notch 1, ankyrin 100.0 7.9E-40 2.7E-44 297.3 19.8 226 198-424 8-249 (253)
5 3d9h_A CDNA FLJ77766, highly s 100.0 4.6E-39 1.6E-43 297.4 24.2 210 228-439 52-262 (285)
6 1k1a_A B-cell lymphoma 3-encod 100.0 7.8E-39 2.7E-43 288.4 24.9 218 229-446 3-239 (241)
7 1yyh_A HN1;, notch 1, ankyrin 100.0 4.9E-39 1.7E-43 292.0 23.3 209 230-439 5-230 (253)
8 2f8y_A Notch homolog 1, transl 100.0 1.1E-38 3.8E-43 284.0 25.1 198 231-428 21-221 (223)
9 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-38 5.9E-43 302.3 27.1 241 198-440 22-321 (351)
10 2rfa_A Transient receptor pote 100.0 5E-39 1.7E-43 288.0 21.9 195 234-428 2-227 (232)
11 3b7b_A Euchromatic histone-lys 100.0 1.4E-38 4.7E-43 286.1 24.4 212 227-439 3-217 (237)
12 1k1a_A B-cell lymphoma 3-encod 100.0 2.6E-39 8.9E-44 291.5 19.2 227 196-422 5-240 (241)
13 4b93_B Ankyrin repeat domain-c 100.0 2E-39 6.8E-44 296.6 18.5 232 185-422 8-243 (269)
14 3kea_A K1L; tropism, ANK repea 100.0 7.5E-39 2.6E-43 295.8 18.2 214 228-444 24-242 (285)
15 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-37 1.1E-41 284.6 27.9 226 201-427 6-249 (285)
16 2xai_A ASB-9, ankyrin repeat a 100.0 4.7E-38 1.6E-42 286.9 21.8 237 200-442 3-248 (261)
17 4b93_B Ankyrin repeat domain-c 100.0 2.6E-38 8.9E-43 289.2 20.0 209 230-439 6-225 (269)
18 3hra_A Ankyrin repeat family p 100.0 1.8E-37 6.1E-42 271.5 23.1 189 233-421 3-201 (201)
19 1wdy_A 2-5A-dependent ribonucl 100.0 4.3E-37 1.5E-41 283.8 26.6 227 199-427 38-282 (285)
20 2dzn_A Probable 26S proteasome 100.0 2.1E-37 7.2E-42 276.6 23.6 204 235-439 2-215 (228)
21 1ikn_D Protein (I-kappa-B-alph 100.0 4.5E-39 1.5E-43 289.2 12.8 198 230-427 3-213 (236)
22 3ljn_A Hypothetical protein; a 100.0 8.5E-38 2.9E-42 299.5 22.2 223 198-424 18-270 (364)
23 2fo1_E LIN-12 protein; beta-ba 100.0 7.1E-38 2.4E-42 300.7 20.3 227 198-424 123-372 (373)
24 3aji_A 26S proteasome non-ATPa 100.0 3.7E-37 1.3E-41 275.6 23.6 205 234-439 5-212 (231)
25 2etb_A Transient receptor pote 100.0 1.8E-38 6.2E-43 288.8 14.5 193 235-427 2-250 (256)
26 4g8k_A 2-5A-dependent ribonucl 100.0 3.7E-37 1.3E-41 291.8 23.6 245 199-445 24-323 (337)
27 3d9h_A CDNA FLJ77766, highly s 100.0 4.1E-37 1.4E-41 284.2 22.8 220 198-423 57-279 (285)
28 3b7b_A Euchromatic histone-lys 100.0 5E-37 1.7E-41 275.9 22.7 220 198-419 9-231 (237)
29 4gpm_A Engineered protein OR26 100.0 5.2E-37 1.8E-41 259.7 21.2 158 236-424 5-162 (169)
30 1oy3_D Transcription factor in 100.0 2.2E-37 7.7E-42 285.5 20.1 213 198-410 7-270 (282)
31 1n11_A Ankyrin; clathrin, BAND 100.0 2.1E-36 7.3E-41 297.0 25.8 239 200-441 146-386 (437)
32 2pnn_A Transient receptor pote 100.0 1.2E-37 4E-42 286.3 14.2 201 229-429 7-265 (273)
33 1s70_B 130 kDa myosin-binding 100.0 1E-36 3.6E-41 283.7 20.0 197 231-427 36-261 (299)
34 2dzn_A Probable 26S proteasome 100.0 2.1E-36 7.3E-41 270.0 21.0 216 201-420 3-227 (228)
35 3eu9_A Huntingtin-interacting 100.0 5.3E-36 1.8E-40 269.4 23.0 223 200-424 9-236 (240)
36 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-35 4.2E-40 291.6 25.9 227 199-427 13-241 (437)
37 2fo1_E LIN-12 protein; beta-ba 100.0 8.4E-37 2.9E-41 293.2 16.4 235 198-438 92-352 (373)
38 3kea_A K1L; tropism, ANK repea 100.0 1.8E-36 6.1E-41 279.9 15.7 219 198-427 29-250 (285)
39 3eu9_A Huntingtin-interacting 100.0 4E-35 1.4E-39 263.6 23.9 210 229-439 3-217 (240)
40 3jxi_A Vanilloid receptor-rela 100.0 8E-37 2.7E-41 278.6 12.8 194 234-427 4-254 (260)
41 1s70_B 130 kDa myosin-binding 100.0 6.8E-36 2.3E-40 278.2 17.2 192 228-420 66-286 (299)
42 3utm_A Tankyrase-1; tankyrase, 100.0 1.4E-34 4.8E-39 275.3 25.6 202 229-430 18-279 (351)
43 2f8y_A Notch homolog 1, transl 100.0 2.4E-35 8.4E-40 262.3 18.7 199 246-444 2-212 (223)
44 4g8k_A 2-5A-dependent ribonucl 100.0 4.7E-34 1.6E-38 270.5 25.2 194 227-425 117-328 (337)
45 4hbd_A KN motif and ankyrin re 100.0 6.8E-35 2.3E-39 267.9 14.3 190 233-422 74-274 (276)
46 2rfm_A Putative ankyrin repeat 100.0 1.2E-33 4.1E-38 245.3 18.3 162 261-422 28-191 (192)
47 3ljn_A Hypothetical protein; a 100.0 2.8E-34 9.7E-39 275.0 14.8 220 202-425 55-316 (364)
48 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-34 7E-39 258.7 12.6 212 198-409 6-230 (236)
49 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.3E-32 4.6E-37 233.6 20.9 160 231-421 10-169 (169)
50 3v31_A Ankyrin repeat family A 100.0 6.9E-33 2.4E-37 234.9 18.6 162 235-427 3-164 (167)
51 3v30_A DNA-binding protein rfx 100.0 3.6E-33 1.2E-37 237.9 15.7 161 236-427 3-164 (172)
52 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.7E-33 2.3E-37 233.7 16.2 158 234-423 4-162 (162)
53 2rfa_A Transient receptor pote 100.0 3.8E-32 1.3E-36 243.2 21.7 173 267-439 2-204 (232)
54 1sw6_A Regulatory protein SWI6 100.0 3.1E-33 1.1E-37 263.3 13.2 193 238-439 100-323 (327)
55 3v30_A DNA-binding protein rfx 100.0 2.8E-32 9.4E-37 232.3 17.6 139 269-439 3-142 (172)
56 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.9E-32 9.8E-37 229.8 17.2 158 200-390 5-162 (162)
57 1awc_B Protein (GA binding pro 100.0 1.2E-31 4E-36 223.8 20.0 151 235-417 2-152 (153)
58 2rfm_A Putative ankyrin repeat 100.0 2.5E-32 8.7E-37 237.0 15.2 164 225-388 25-190 (192)
59 3v31_A Ankyrin repeat family A 100.0 5.6E-32 1.9E-36 229.3 16.9 160 200-392 3-162 (167)
60 3twr_A Tankyrase-2; ankyrin re 100.0 8.4E-32 2.9E-36 227.7 17.7 159 232-422 5-164 (165)
61 3hra_A Ankyrin repeat family p 100.0 2.9E-31 9.8E-36 232.0 21.4 188 200-388 5-201 (201)
62 2vge_A RELA-associated inhibit 100.0 1E-34 3.4E-39 258.9 -1.6 186 229-417 15-207 (229)
63 1sw6_A Regulatory protein SWI6 100.0 2.8E-32 9.4E-37 256.9 13.3 179 223-409 118-327 (327)
64 3f6q_A Integrin-linked protein 100.0 1.9E-31 6.4E-36 228.7 17.1 162 234-426 4-166 (179)
65 2etb_A Transient receptor pote 100.0 1.2E-31 4.1E-36 243.7 16.8 173 267-439 1-228 (256)
66 3f6q_A Integrin-linked protein 100.0 2E-31 6.9E-36 228.5 16.9 140 267-438 4-144 (179)
67 2pnn_A Transient receptor pote 100.0 4.3E-32 1.5E-36 249.1 11.8 173 231-403 50-272 (273)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-30 3.7E-35 218.7 18.9 153 235-420 2-155 (156)
69 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.2E-31 4E-36 241.1 7.6 188 232-422 2-203 (239)
70 4gpm_A Engineered protein OR26 100.0 7.6E-30 2.6E-34 215.6 17.9 154 207-393 11-164 (169)
71 4hbd_A KN motif and ankyrin re 100.0 3.8E-30 1.3E-34 236.2 15.9 164 225-388 101-273 (276)
72 3jxi_A Vanilloid receptor-rela 100.0 8E-31 2.7E-35 238.8 10.7 162 232-393 43-253 (260)
73 3t8k_A Uncharacterized protein 100.0 2.7E-30 9.3E-35 222.1 10.9 163 234-423 5-179 (186)
74 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4E-30 1.4E-34 231.1 10.6 161 265-426 2-167 (239)
75 1d9s_A Cyclin-dependent kinase 100.0 5.5E-29 1.9E-33 203.2 14.5 133 259-423 3-136 (136)
76 1d9s_A Cyclin-dependent kinase 100.0 1E-28 3.5E-33 201.6 12.6 132 227-390 4-136 (136)
77 1bi7_B P16INK4A, MTS1, multipl 100.0 4.5E-29 1.5E-33 208.8 10.5 142 263-405 7-151 (156)
78 2vge_A RELA-associated inhibit 100.0 4.6E-30 1.6E-34 228.7 3.9 171 251-424 1-179 (229)
79 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-26 4.6E-31 186.0 16.7 126 267-423 1-126 (126)
80 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-27 4.5E-32 195.2 10.4 135 258-424 1-135 (137)
81 2aja_A Ankyrin repeat family p 99.9 1.6E-29 5.3E-34 240.6 -1.2 202 232-441 89-367 (376)
82 2jab_A H10-2-G3; HER2, darpin, 99.9 9E-27 3.1E-31 190.0 14.9 123 268-421 14-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-27 4.5E-32 199.9 9.3 142 230-372 7-151 (156)
84 2jab_A H10-2-G3; HER2, darpin, 99.9 5.5E-26 1.9E-30 185.3 16.8 128 230-388 9-136 (136)
85 2aja_A Ankyrin repeat family p 99.9 7.3E-29 2.5E-33 236.0 -1.1 176 234-424 64-251 (376)
86 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-25 4.7E-30 190.2 17.5 156 200-388 14-169 (169)
87 3deo_A Signal recognition part 99.9 8.2E-28 2.8E-32 206.7 3.7 140 232-420 41-181 (183)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-25 4.1E-30 180.5 15.2 126 234-390 1-126 (126)
89 3twr_A Tankyrase-2; ankyrin re 99.9 8.6E-26 2.9E-30 190.6 14.5 156 201-389 9-164 (165)
90 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.2E-25 1.1E-29 185.2 16.3 151 203-387 5-155 (156)
91 1awc_B Protein (GA binding pro 99.9 2.5E-25 8.7E-30 185.2 15.2 139 269-440 3-141 (153)
92 3ui2_A Signal recognition part 99.9 1.1E-25 3.7E-30 202.6 12.3 144 231-423 41-185 (244)
93 2b0o_E UPLC1; arfgap, structur 99.9 2.6E-25 8.8E-30 206.1 12.8 139 267-411 150-299 (301)
94 3t8k_A Uncharacterized protein 99.9 8.7E-26 3E-30 193.9 8.5 137 233-395 36-184 (186)
95 3aaa_C Myotrophin, protein V-1 99.9 4.3E-25 1.5E-29 176.6 11.0 116 266-412 5-120 (123)
96 3ui2_A Signal recognition part 99.9 4.4E-25 1.5E-29 198.7 12.3 143 197-390 42-185 (244)
97 3deo_A Signal recognition part 99.9 9.6E-25 3.3E-29 187.5 13.7 113 197-312 41-154 (183)
98 3ehr_A Osteoclast-stimulating 99.9 7.4E-25 2.5E-29 194.4 8.4 136 232-398 70-206 (222)
99 1dcq_A PYK2-associated protein 99.9 6.7E-24 2.3E-28 194.4 14.7 191 233-427 64-267 (278)
100 3c5r_A BARD-1, BRCA1-associate 99.9 9.6E-25 3.3E-29 178.1 8.0 129 230-389 5-133 (137)
101 3aaa_C Myotrophin, protein V-1 99.9 4.8E-24 1.6E-28 170.5 11.5 117 232-379 4-120 (123)
102 3ehr_A Osteoclast-stimulating 99.9 2E-24 6.8E-29 191.6 8.5 134 264-427 69-202 (222)
103 2b0o_E UPLC1; arfgap, structur 99.9 3.7E-23 1.3E-27 191.6 14.9 126 298-423 148-284 (301)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.9E-23 1.3E-27 156.4 12.0 93 331-423 1-93 (93)
105 1dcq_A PYK2-associated protein 99.9 6E-23 2E-27 188.0 15.3 128 233-391 128-264 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.9 6.1E-23 2.1E-27 203.9 15.4 125 270-394 134-269 (497)
107 3jue_A Arfgap with coiled-coil 99.9 1.1E-22 3.8E-27 192.7 15.3 145 234-409 198-348 (368)
108 3jue_A Arfgap with coiled-coil 99.9 1.3E-22 4.3E-27 192.3 13.4 145 298-442 196-347 (368)
109 3lvq_E ARF-GAP with SH3 domain 99.9 3.2E-22 1.1E-26 198.8 14.6 126 301-426 132-268 (497)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.3E-22 1.8E-26 150.1 11.8 93 234-326 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.9 9.5E-22 3.3E-26 155.0 8.8 108 264-402 5-112 (115)
112 2ptm_A Hyperpolarization-activ 99.8 3.3E-20 1.1E-24 161.1 16.4 144 62-209 50-193 (198)
113 2l6b_A NR1C; ankyrin, consensu 99.8 1E-20 3.5E-25 149.1 9.2 103 330-432 7-109 (115)
114 3bpz_A Potassium/sodium hyperp 99.8 1.4E-19 4.8E-24 157.7 15.1 144 61-209 50-193 (202)
115 3ukn_A Novel protein similar t 99.8 2.4E-19 8.3E-24 157.5 14.9 141 63-209 56-198 (212)
116 4f8a_A Potassium voltage-gated 99.8 3.3E-19 1.1E-23 149.2 14.6 140 63-207 7-148 (160)
117 3mdp_A Cyclic nucleotide-bindi 99.8 1.6E-19 5.4E-24 147.9 12.0 128 82-209 5-135 (142)
118 3idb_B CAMP-dependent protein 99.8 5.1E-19 1.8E-23 148.2 14.6 129 76-205 31-159 (161)
119 2zgd_A 3 repeat synthetic anky 99.8 2.3E-19 7.9E-24 140.0 10.9 87 331-417 23-109 (110)
120 2pqq_A Putative transcriptiona 99.8 8.8E-19 3E-23 144.6 13.5 128 82-209 4-131 (149)
121 3gyd_A CNMP-BD protein, cyclic 99.8 1E-18 3.4E-23 150.2 13.8 143 62-208 22-164 (187)
122 2zgd_A 3 repeat synthetic anky 99.8 1.1E-18 3.8E-23 136.1 11.8 95 226-320 15-109 (110)
123 2z69_A DNR protein; beta barre 99.8 2.3E-18 7.7E-23 143.1 12.5 130 80-209 9-139 (154)
124 3dn7_A Cyclic nucleotide bindi 99.8 4E-18 1.4E-22 147.5 12.9 130 80-209 4-134 (194)
125 3e97_A Transcriptional regulat 99.7 9.7E-18 3.3E-22 149.3 13.3 128 82-209 5-132 (231)
126 4ev0_A Transcription regulator 99.7 8.2E-18 2.8E-22 148.1 12.6 125 85-209 1-125 (216)
127 3ocp_A PRKG1 protein; serine/t 99.7 1.9E-17 6.5E-22 135.0 12.5 123 75-202 15-137 (139)
128 3fx3_A Cyclic nucleotide-bindi 99.7 1.1E-17 3.7E-22 149.6 11.9 131 79-209 7-137 (237)
129 3dv8_A Transcriptional regulat 99.7 2.4E-17 8.1E-22 145.6 13.8 127 83-209 3-131 (220)
130 1zyb_A Transcription regulator 99.7 2.5E-17 8.7E-22 146.6 12.9 131 79-209 14-147 (232)
131 3d0s_A Transcriptional regulat 99.7 7.3E-18 2.5E-22 149.7 9.3 129 81-209 4-132 (227)
132 1wgp_A Probable cyclic nucleot 99.7 7.8E-18 2.7E-22 136.9 8.2 118 83-201 6-134 (137)
133 3pna_A CAMP-dependent protein 99.7 8.6E-17 3E-21 133.5 13.4 120 78-202 33-152 (154)
134 3iwz_A CAP-like, catabolite ac 99.7 7.3E-17 2.5E-21 143.5 13.8 128 82-209 10-143 (230)
135 3dkw_A DNR protein; CRP-FNR, H 99.7 1.3E-17 4.3E-22 148.1 8.1 129 81-209 7-136 (227)
136 1vp6_A CNBD, cyclic-nucleotide 99.7 4.5E-17 1.5E-21 132.5 10.7 124 80-210 8-131 (138)
137 4ava_A Lysine acetyltransferas 99.7 8.3E-17 2.8E-21 151.5 13.1 128 81-210 11-138 (333)
138 2gau_A Transcriptional regulat 99.7 5.7E-17 1.9E-21 144.4 10.6 123 87-209 14-136 (232)
139 3tnp_B CAMP-dependent protein 99.7 3.2E-16 1.1E-20 151.4 14.3 132 76-208 138-269 (416)
140 3shr_A CGMP-dependent protein 99.7 1.5E-16 5.2E-21 147.4 11.6 134 77-210 151-285 (299)
141 3ryp_A Catabolite gene activat 99.7 4.6E-16 1.6E-20 136.2 13.4 121 89-209 2-123 (210)
142 3shr_A CGMP-dependent protein 99.7 1.7E-15 5.9E-20 140.2 16.0 129 75-208 31-159 (299)
143 2qcs_B CAMP-dependent protein 99.7 2.1E-15 7.3E-20 139.0 16.6 132 76-207 150-282 (291)
144 2oz6_A Virulence factor regula 99.7 1.3E-15 4.3E-20 133.1 14.0 116 94-209 1-120 (207)
145 2d93_A RAP guanine nucleotide 99.7 2E-16 6.7E-21 128.0 8.0 115 80-199 13-129 (134)
146 2qcs_B CAMP-dependent protein 99.6 3.3E-15 1.1E-19 137.7 14.7 127 78-209 34-160 (291)
147 3kcc_A Catabolite gene activat 99.6 2.7E-15 9.1E-20 135.9 13.1 119 91-209 54-173 (260)
148 2fmy_A COOA, carbon monoxide o 99.6 5.2E-16 1.8E-20 136.9 7.9 120 82-209 3-122 (220)
149 1o5l_A Transcriptional regulat 99.6 9.4E-16 3.2E-20 134.5 9.4 124 87-210 3-127 (213)
150 1o7f_A CAMP-dependent RAP1 gua 99.6 6.1E-15 2.1E-19 145.5 15.9 132 77-209 36-169 (469)
151 3tnp_B CAMP-dependent protein 99.6 2E-15 6.8E-20 145.8 11.7 130 78-207 262-397 (416)
152 3of1_A CAMP-dependent protein 99.6 9.2E-16 3.1E-20 137.7 8.5 123 80-207 4-126 (246)
153 4din_B CAMP-dependent protein 99.6 4E-15 1.4E-19 142.2 12.8 127 78-209 125-251 (381)
154 4din_B CAMP-dependent protein 99.6 2.4E-15 8.1E-20 143.8 11.1 131 76-206 241-372 (381)
155 1ft9_A Carbon monoxide oxidati 99.6 9E-16 3.1E-20 135.6 7.5 118 84-209 1-118 (222)
156 3of1_A CAMP-dependent protein 99.6 4.1E-15 1.4E-19 133.5 11.2 119 77-199 119-237 (246)
157 3beh_A MLL3241 protein; transm 99.6 1.9E-16 6.5E-21 150.1 2.3 121 83-210 228-348 (355)
158 3e6c_C CPRK, cyclic nucleotide 99.6 4.3E-15 1.5E-19 133.7 10.1 122 85-209 11-132 (250)
159 2bgc_A PRFA; bacterial infecti 99.5 5.4E-14 1.9E-18 125.5 13.3 117 92-209 2-123 (238)
160 1o7f_A CAMP-dependent RAP1 gua 99.5 2.1E-13 7.3E-18 134.4 15.1 122 80-205 334-457 (469)
161 3la7_A Global nitrogen regulat 99.5 9.9E-14 3.4E-18 124.2 11.2 114 96-209 30-148 (243)
162 4f7z_A RAP guanine nucleotide 99.5 3.2E-13 1.1E-17 144.9 15.9 121 81-202 40-162 (999)
163 3cf6_E RAP guanine nucleotide 99.4 4.1E-13 1.4E-17 137.0 11.4 121 79-203 28-150 (694)
164 3b02_A Transcriptional regulat 99.4 9.9E-13 3.4E-17 113.4 9.8 92 109-207 2-93 (195)
165 4f7z_A RAP guanine nucleotide 99.3 8.8E-12 3E-16 133.8 14.4 117 79-199 333-451 (999)
166 2zcw_A TTHA1359, transcription 99.3 4.5E-12 1.5E-16 110.0 7.5 86 103-190 2-89 (202)
167 1orq_C Potassium channel; volt 96.5 0.00075 2.6E-08 58.7 1.5 53 7-74 35-87 (223)
168 2r9r_B Paddle chimera voltage 92.8 0.017 5.9E-07 56.6 -0.3 49 11-73 239-288 (514)
169 1ors_C Potassium channel; volt 88.2 0.22 7.6E-06 38.8 2.2 46 13-73 39-84 (132)
170 2kyh_A KVAP, voltage-gated pot 80.7 0.61 2.1E-05 37.0 1.6 46 13-73 54-99 (147)
171 3lwc_A Uncharacterized protein 76.0 22 0.00076 26.6 9.2 68 107-185 43-110 (119)
172 4g26_A Pentatricopeptide repea 75.0 5.2 0.00018 38.9 6.7 142 237-385 31-198 (501)
173 3rns_A Cupin 2 conserved barre 74.0 21 0.00071 30.3 9.6 70 105-185 38-107 (227)
174 3fjs_A Uncharacterized protein 72.6 26 0.00089 25.8 9.0 66 106-182 38-103 (114)
175 2ozj_A Cupin 2, conserved barr 71.6 27 0.00091 25.5 8.8 65 109-184 43-107 (114)
176 1o5u_A Novel thermotoga mariti 62.2 22 0.00077 25.6 6.3 47 106-159 33-79 (101)
177 1dgw_A Canavalin; duplicated s 59.5 16 0.00053 29.7 5.6 52 106-159 43-94 (178)
178 3es1_A Cupin 2, conserved barr 58.3 16 0.00054 29.6 5.3 48 106-158 81-128 (172)
179 1v70_A Probable antibiotics sy 57.5 40 0.0014 23.6 7.2 47 107-159 31-78 (105)
180 3ibm_A Cupin 2, conserved barr 55.4 51 0.0017 26.2 8.0 48 106-159 58-105 (167)
181 4e2g_A Cupin 2 conserved barre 55.2 29 0.00099 25.8 6.2 49 105-159 42-90 (126)
182 2gu9_A Tetracenomycin polyketi 55.1 39 0.0013 24.2 6.9 48 106-159 23-73 (113)
183 2d5f_A Glycinin A3B4 subunit; 55.0 32 0.0011 33.1 7.7 60 101-160 364-424 (493)
184 1fxz_A Glycinin G1; proglycini 54.9 30 0.001 33.1 7.4 54 106-159 340-394 (476)
185 3c3v_A Arachin ARAH3 isoform; 54.0 30 0.001 33.4 7.2 58 102-159 370-428 (510)
186 3h8u_A Uncharacterized conserv 53.8 53 0.0018 24.3 7.5 49 106-159 41-90 (125)
187 4g26_A Pentatricopeptide repea 53.3 33 0.0011 33.1 7.7 101 248-352 90-198 (501)
188 2fqp_A Hypothetical protein BP 52.9 23 0.00078 25.1 5.0 50 107-160 21-71 (97)
189 3fz3_A Prunin; TREE NUT allerg 52.6 44 0.0015 32.3 8.1 59 102-160 392-451 (531)
190 3bcw_A Uncharacterized protein 52.1 19 0.00064 27.2 4.5 46 110-161 55-100 (123)
191 1yhf_A Hypothetical protein SP 51.5 65 0.0022 23.2 9.3 67 106-183 42-108 (115)
192 3rns_A Cupin 2 conserved barre 51.3 69 0.0024 26.9 8.6 67 105-182 154-221 (227)
193 2vqa_A SLL1358 protein, MNCA; 49.1 40 0.0014 30.8 7.2 52 107-159 55-107 (361)
194 1sfn_A Conserved hypothetical 49.0 55 0.0019 28.0 7.7 50 104-159 165-215 (246)
195 1zvf_A 3-hydroxyanthranilate 3 48.6 30 0.001 27.8 5.2 60 121-186 51-113 (176)
196 3i7d_A Sugar phosphate isomera 48.3 36 0.0012 27.0 6.0 48 106-159 45-94 (163)
197 2vpv_A Protein MIF2, MIF2P; nu 48.2 29 0.001 27.8 5.3 46 109-160 93-140 (166)
198 1j58_A YVRK protein; cupin, de 47.8 40 0.0014 31.1 7.1 53 106-159 81-133 (385)
199 1fi2_A Oxalate oxidase, germin 47.8 57 0.002 26.9 7.4 54 106-159 74-130 (201)
200 3es4_A Uncharacterized protein 47.4 24 0.00084 26.3 4.4 46 110-161 48-93 (116)
201 2pfw_A Cupin 2, conserved barr 47.0 78 0.0027 22.8 8.9 68 106-184 36-103 (116)
202 2i45_A Hypothetical protein; n 46.7 40 0.0014 24.1 5.6 68 111-189 35-103 (107)
203 2e9q_A 11S globulin subunit be 46.6 54 0.0018 31.2 7.7 58 102-159 320-378 (459)
204 2f4p_A Hypothetical protein TM 46.3 72 0.0025 24.6 7.4 48 107-159 51-98 (147)
205 2pyt_A Ethanolamine utilizatio 45.4 32 0.0011 26.3 5.0 46 108-161 61-106 (133)
206 1sfn_A Conserved hypothetical 44.7 1.3E+02 0.0044 25.6 9.4 64 108-184 54-117 (246)
207 2bnm_A Epoxidase; oxidoreducta 44.4 47 0.0016 27.1 6.3 49 109-159 122-173 (198)
208 3kgz_A Cupin 2 conserved barre 44.4 39 0.0013 26.6 5.5 46 108-159 48-93 (156)
209 1vj2_A Novel manganese-contain 44.1 50 0.0017 24.6 5.9 46 108-159 52-97 (126)
210 3l2h_A Putative sugar phosphat 44.1 38 0.0013 26.6 5.5 47 107-159 49-97 (162)
211 1o4t_A Putative oxalate decarb 43.9 55 0.0019 24.7 6.2 46 108-159 61-107 (133)
212 3cew_A Uncharacterized cupin p 43.7 68 0.0023 23.7 6.7 47 107-159 29-77 (125)
213 2vqa_A SLL1358 protein, MNCA; 43.5 59 0.002 29.6 7.5 53 106-159 236-289 (361)
214 1j58_A YVRK protein; cupin, de 42.9 75 0.0026 29.2 8.1 51 108-159 261-312 (385)
215 4b29_A Dimethylsulfoniopropion 42.8 50 0.0017 27.7 6.0 46 110-160 138-183 (217)
216 3zrh_A Ubiquitin thioesterase 42.5 60 0.002 30.1 6.8 50 240-289 27-90 (454)
217 2oa2_A BH2720 protein; 1017534 42.2 1E+02 0.0034 23.7 7.7 52 108-159 47-99 (148)
218 3jzv_A Uncharacterized protein 42.2 35 0.0012 27.3 5.0 46 108-159 57-102 (166)
219 3rvy_A ION transport protein; 41.6 6.4 0.00022 34.9 0.5 41 13-69 63-104 (285)
220 2q1z_B Anti-sigma factor CHRR, 41.0 51 0.0018 27.1 5.9 65 105-184 126-192 (195)
221 3d0j_A Uncharacterized protein 40.5 35 0.0012 26.4 4.3 65 118-187 44-110 (140)
222 3h7j_A Bacilysin biosynthesis 39.3 70 0.0024 27.2 6.8 48 108-161 149-197 (243)
223 1y9q_A Transcriptional regulat 39.1 92 0.0032 25.1 7.3 45 109-159 109-155 (192)
224 2o1q_A Putative acetyl/propion 39.1 41 0.0014 26.1 4.8 53 106-162 46-98 (145)
225 1yfu_A 3-hydroxyanthranilate-3 38.4 50 0.0017 26.5 5.1 57 123-186 54-111 (174)
226 4axo_A EUTQ, ethanolamine util 37.2 1.2E+02 0.0041 23.7 7.2 31 123-159 83-113 (151)
227 3h7j_A Bacilysin biosynthesis 36.6 1E+02 0.0034 26.2 7.4 47 106-158 36-82 (243)
228 3ksc_A LEGA class, prolegumin; 35.6 98 0.0034 29.7 7.6 56 104-159 358-414 (496)
229 2cav_A Protein (canavalin); vi 35.2 44 0.0015 31.7 5.2 54 105-160 87-140 (445)
230 3bu7_A Gentisate 1,2-dioxygena 35.2 86 0.0029 29.1 6.9 77 107-192 297-374 (394)
231 2b8m_A Hypothetical protein MJ 34.4 53 0.0018 23.9 4.6 46 109-159 32-77 (117)
232 1lr5_A Auxin binding protein 1 34.4 89 0.003 24.4 6.3 52 107-159 44-99 (163)
233 3qac_A 11S globulin SEED stora 34.0 1.3E+02 0.0045 28.6 8.1 57 104-160 323-380 (465)
234 3lag_A Uncharacterized protein 34.0 17 0.00058 26.1 1.6 50 106-158 19-69 (98)
235 3kgl_A Cruciferin; 11S SEED gl 32.9 1E+02 0.0036 29.2 7.2 57 103-159 322-379 (466)
236 1sq4_A GLXB, glyoxylate-induce 32.5 72 0.0025 27.9 5.8 50 104-159 191-241 (278)
237 1gp8_A Protein (scaffolding pr 32.0 37 0.0013 19.4 2.4 20 237-256 15-34 (40)
238 2ea7_A 7S globulin-1; beta bar 31.5 63 0.0021 30.5 5.5 53 105-159 62-114 (434)
239 1rc6_A Hypothetical protein YL 31.2 66 0.0022 27.7 5.3 68 108-184 63-132 (261)
240 2xp1_A SPT6; transcription, IW 30.3 92 0.0032 25.2 5.6 35 87-127 13-47 (178)
241 4e2q_A Ureidoglycine aminohydr 29.4 1.2E+02 0.0042 26.3 6.6 69 107-186 73-142 (266)
242 1uij_A Beta subunit of beta co 29.4 75 0.0026 29.8 5.6 53 105-159 50-102 (416)
243 2e9q_A 11S globulin subunit be 28.6 1.6E+02 0.0056 27.9 7.8 64 98-161 57-140 (459)
244 2phl_A Phaseolin; plant SEED s 28.1 70 0.0024 29.7 5.1 51 105-157 53-103 (397)
245 2opk_A Hypothetical protein; p 27.8 66 0.0023 23.4 4.1 36 122-161 51-86 (112)
246 2q30_A Uncharacterized protein 27.6 1.3E+02 0.0044 21.2 5.8 48 107-159 36-85 (110)
247 1sq4_A GLXB, glyoxylate-induce 26.5 77 0.0026 27.7 4.9 46 108-159 72-119 (278)
248 4i4a_A Similar to unknown prot 26.4 1.9E+02 0.0065 21.1 8.9 81 108-197 38-120 (128)
249 1sef_A Conserved hypothetical 26.3 2.2E+02 0.0075 24.6 7.9 48 106-159 184-232 (274)
250 2phl_A Phaseolin; plant SEED s 26.2 1.1E+02 0.0036 28.5 6.0 38 123-160 259-302 (397)
251 1sef_A Conserved hypothetical 26.1 88 0.003 27.2 5.2 46 109-160 67-114 (274)
252 3zrh_A Ubiquitin thioesterase 25.9 1.5E+02 0.0052 27.4 6.6 64 338-420 28-91 (454)
253 3d82_A Cupin 2, conserved barr 25.1 1.7E+02 0.0058 20.1 6.9 56 119-185 45-100 (102)
254 3ebr_A Uncharacterized RMLC-li 24.9 1.5E+02 0.0051 23.3 5.9 66 105-183 43-112 (159)
255 1fxz_A Glycinin G1; proglycini 24.3 1.4E+02 0.0049 28.4 6.6 70 90-160 35-125 (476)
256 1rc6_A Hypothetical protein YL 24.0 1E+02 0.0035 26.5 5.3 48 106-159 181-229 (261)
257 1juh_A Quercetin 2,3-dioxygena 23.9 1.3E+02 0.0045 27.3 6.1 48 111-159 55-105 (350)
258 2qnk_A 3-hydroxyanthranilate 3 23.5 1.2E+02 0.0041 26.5 5.2 63 116-186 44-106 (286)
259 3ht1_A REMF protein; cupin fol 23.4 77 0.0026 23.9 3.9 32 124-159 59-90 (145)
260 3bu7_A Gentisate 1,2-dioxygena 22.8 86 0.0029 29.1 4.6 49 107-160 126-174 (394)
261 1x82_A Glucose-6-phosphate iso 22.8 1.3E+02 0.0044 24.4 5.3 52 107-159 70-130 (190)
262 4e2q_A Ureidoglycine aminohydr 22.5 1.4E+02 0.0048 25.9 5.6 53 102-160 184-237 (266)
263 4dxw_A Navrh, ION transport pr 21.5 31 0.001 29.2 1.2 42 13-68 44-86 (229)
264 2qjv_A Uncharacterized IOLB-li 20.9 4.1E+02 0.014 23.0 8.3 78 104-186 29-110 (270)
265 2d40_A Z3393, putative gentisa 20.9 1.6E+02 0.0054 26.8 6.0 79 106-193 102-181 (354)
266 1y3t_A Hypothetical protein YX 20.7 1.7E+02 0.0058 26.0 6.3 47 107-159 49-96 (337)
267 3s7i_A Allergen ARA H 1, clone 20.3 1.4E+02 0.0047 28.0 5.5 50 108-159 48-97 (418)
No 1
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=295.24 Aligned_cols=190 Identities=27% Similarity=0.299 Sum_probs=108.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 013151 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 314 (448)
|.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHcCCccccc-CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCC
Q 013151 315 GVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393 (448)
Q Consensus 315 ~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~ 393 (448)
+++++|+++|++++.. ++.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 83 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 162 (261)
T 2xai_A 83 DCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162 (261)
T ss_dssp HHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 5555555555555432 244555555555555555555555555555555555555555555555555555555555553
Q ss_pred CCCCCCChhHHHHhcCCHHHHHHHHHhccccc
Q 013151 394 KDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425 (448)
Q Consensus 394 ~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~ 425 (448)
|..|.||||+|+..|+.+++++|+++|++..
T Consensus 163 -~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 163 -GKGQDSPLHAVARTASEELACLLMDFGADTQ 193 (261)
T ss_dssp -CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred -CCCCCChHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 5555555555555555555555555555543
No 2
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.8e-39 Score=290.73 Aligned_cols=221 Identities=25% Similarity=0.339 Sum_probs=194.6
Q ss_pred hhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 013151 202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYE 281 (448)
Q Consensus 202 ~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 281 (448)
..+..++..++.+.....+..... ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 86 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred chHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Confidence 334444444444444333332222 2445677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCC
Q 013151 282 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPS 359 (448)
Q Consensus 282 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~ 359 (448)
+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++
T Consensus 87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 166 (231)
T 3aji_A 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166 (231)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999988765 7799999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 360 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..++.+++++|+++|++
T Consensus 167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1e-39 Score=301.21 Aligned_cols=211 Identities=23% Similarity=0.225 Sum_probs=187.2
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGAD---PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L 305 (448)
+..+..|.||||+|+..|+.+++++|++.|++ ++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45678899999999999999999999999988 788999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHcCCc-----------------------------------------------ccc--cCCchhH
Q 013151 306 LEAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFL 336 (448)
Q Consensus 306 ~~A~~~~~~~~v~~Ll~~g~~-----------------------------------------------~~~--~~~~~~l 336 (448)
|+|+..|+.+++++|+++|++ ++. ..+.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 999999999999999998765 222 3477999
Q ss_pred HHHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHH
Q 013151 337 CTAVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 415 (448)
Q Consensus 337 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~ 415 (448)
|+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccCCcchHHHHh
Q 013151 416 LLEDAECTQLSEFHYCSQGMIGIAE 440 (448)
Q Consensus 416 ~Ll~~~~~~~~~~~~~~~~~~~~~~ 440 (448)
+|+++|++...... .+.++++++.
T Consensus 243 ~Ll~~ga~~~~~~~-~g~tpl~~a~ 266 (282)
T 1oy3_D 243 LLRAHGAPEPEDGG-DKLSPCSSSG 266 (282)
T ss_dssp HHHHTTCCCCCCC------------
T ss_pred HHHHcCCCcCcCCC-cccccccccC
Confidence 99999998765544 4455555543
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.9e-40 Score=297.26 Aligned_cols=226 Identities=26% Similarity=0.277 Sum_probs=170.1
Q ss_pred hcchhhhhHhhhcc-------------chhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 013151 198 CDGRKVLTNLLEGK-------------ESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT 264 (448)
Q Consensus 198 ~~~~~il~~ll~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 264 (448)
..|.+.++.++..+ ..+.....+...... ....+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 86 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 86 (253)
T ss_dssp ---------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 45667777776543 333333333332222 1234678889999999999999999999999999988
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHh
Q 013151 265 DYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVA 341 (448)
Q Consensus 265 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~ 341 (448)
+..|+||||+|+..|+.+++++|++++. +++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+.
T Consensus 87 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 166 (253)
T 1yyh_A 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166 (253)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 8899999999999999999999999887 888888899999999999999999999999988888755 6789999999
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhc
Q 013151 342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421 (448)
Q Consensus 342 ~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~ 421 (448)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+++|+.+++++|.+..
T Consensus 167 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccc
Q 013151 422 CTQ 424 (448)
Q Consensus 422 ~~~ 424 (448)
..+
T Consensus 247 ~~~ 249 (253)
T 1yyh_A 247 HHH 249 (253)
T ss_dssp ---
T ss_pred hhc
Confidence 544
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=297.37 Aligned_cols=210 Identities=25% Similarity=0.266 Sum_probs=194.7
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013151 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307 (448)
Q Consensus 228 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 307 (448)
....+..|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHcCCccccc-CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 013151 308 AIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~ 386 (448)
|+..|+.+++++|+++|++++.. ++.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998754 47899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 387 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 387 ~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
+|++++. |..|+||||+|+..|+.+++++|+++|++...... .+.+++++|
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~-~g~t~l~~A 262 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA-EGKRPVELV 262 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCGGGGS
T ss_pred CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHh
Confidence 9999995 89999999999999999999999999998665444 334444443
No 6
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.8e-39 Score=288.36 Aligned_cols=218 Identities=22% Similarity=0.242 Sum_probs=179.0
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 304 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 304 (448)
+..+..|.||||+|+..|+.++++.|++ .|.+++..|..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 3456788899999999999999998887 688888888899999999999999999999999999999888899999
Q ss_pred HHHHHHcCChhHHHHHHHcCC----ccccc--CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCc
Q 013151 305 LLEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVAASEGL 377 (448)
Q Consensus 305 L~~A~~~~~~~~v~~Ll~~g~----~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~A~~~~~ 377 (448)
||+|+..|+.+++++|++++. +++.. .+.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999998876 55543 47789999999999999999999999998888 789999999999999
Q ss_pred HHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccccccc--------CCcchHHHHhhhhccc
Q 013151 378 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHY--------CSQGMIGIAENLLLLP 446 (448)
Q Consensus 378 ~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 446 (448)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....... ...+..++++.|...|
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999998876544332 3445566666665543
No 7
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.9e-39 Score=292.02 Aligned_cols=209 Identities=25% Similarity=0.266 Sum_probs=161.5
Q ss_pred cchhhhhHHHHHHHhcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013151 230 KHEAELALRVNSAAYHG-------------DLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 295 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 295 (448)
..+..|.||||+|+..| +.++++.|+++|++++. .|..|+||||+|+..|+.+++++|+++|++++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 84 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 45678999999999987 89999999999999865 58999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcCChhHHHHHHHcCC-ccccc--CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013151 296 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372 (448)
Q Consensus 296 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A 372 (448)
..|..|+||||+|+..|+.+++++|++++. +++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 164 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999999987 66654 478999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 373 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 373 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++...... .+.+++++|
T Consensus 165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A 230 (253)
T 1yyh_A 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH-MDRLPRDIA 230 (253)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc-CCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999998765443 334444443
No 8
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.1e-38 Score=283.97 Aligned_cols=198 Identities=28% Similarity=0.336 Sum_probs=189.2
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH
Q 013151 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI 309 (448)
Q Consensus 231 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~ 309 (448)
.+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~ 100 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred HcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q 013151 310 KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA 387 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 387 (448)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999998765 78999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccccc
Q 013151 388 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428 (448)
Q Consensus 388 gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~ 428 (448)
|++++.+|..|.||+|+|+..|+.+++++|+++|+...++.
T Consensus 181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~~ 221 (223)
T 2f8y_A 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221 (223)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC--
T ss_pred CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccccc
Confidence 99999999999999999999999999999999999876654
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-38 Score=302.33 Aligned_cols=241 Identities=23% Similarity=0.248 Sum_probs=211.9
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 277 (448)
..+.+.+..++..++.+.....+. ......+..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+.
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 100 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLT-PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS 100 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCC-TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHH-hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 344555666666666555444443 3445566678889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCccccc---------------------------
Q 013151 278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--------------------------- 330 (448)
Q Consensus 278 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------------------------- 330 (448)
.|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 101 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~ 180 (351)
T 3utm_A 101 YGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999987642
Q ss_pred -----------------------------CCchhHHHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 013151 331 -----------------------------DAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 378 (448)
Q Consensus 331 -----------------------------~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~ 378 (448)
.+.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 260 (351)
T 3utm_A 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260 (351)
T ss_dssp HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH
Confidence 356899999999 568999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHHh
Q 013151 379 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIAE 440 (448)
Q Consensus 379 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 440 (448)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++..... .+.++++++.
T Consensus 261 ~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-~g~tal~~a~ 321 (351)
T 3utm_A 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMGN 321 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHSC
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCChhhhhh
Confidence 999999999999999999999999999999999999999999998765544 4455665543
No 10
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5e-39 Score=288.04 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=182.5
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHH
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----NIKDKFGNTPLLE 307 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~~ 307 (448)
.|.||||.|+..|+.++++.|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999999999999999999999999887 6778899999999
Q ss_pred HHHcCChhHHHHHHHcCCccccc---------------CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013151 308 AIKCGHDGVTSLLVKEGASLNVD---------------DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~g~~~~~~---------------~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A 372 (448)
|+..|+.+++++|+++|++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999875 478999999999999999999999999999999999999999
Q ss_pred HHcCcHHHH----HHHHHCCCCc------CCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccccc
Q 013151 373 ASEGLYLMA----KLLLEAGASV------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428 (448)
Q Consensus 373 ~~~~~~~~v----~~Ll~~gad~------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~ 428 (448)
+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+......
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 999999988 9999999998 5899999999999999999999999999998776543
No 11
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.4e-38 Score=286.07 Aligned_cols=212 Identities=24% Similarity=0.259 Sum_probs=195.9
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013151 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL 306 (448)
Q Consensus 227 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~ 306 (448)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHcC-Cccccc--CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 013151 307 EAIKCGHDGVTSLLVKEG-ASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383 (448)
Q Consensus 307 ~A~~~~~~~~v~~Ll~~g-~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~ 383 (448)
+|+..|+.+++++|+++| .+++.. .+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999998 677654 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 384 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 384 Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..... ..+.+++++|
T Consensus 163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d-~~g~t~l~~A 217 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN-KEGETPLQCA 217 (237)
T ss_dssp HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC-TTSCCHHHHS
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC-CCCCCHHHHH
Confidence 999999999999999999999999999999999999999876553 4455555554
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.6e-39 Score=291.48 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=200.5
Q ss_pred HhhcchhhhhHhhhccchhHHhhhhc--cccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 013151 196 YFCDGRKVLTNLLEGKESNLRLKQLK--SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLH 273 (448)
Q Consensus 196 ~p~~~~~il~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 273 (448)
....+.+.++.++..+..+.....+. .......+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 34567777777777777665544443 1233455667788999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC---CchhHHHHHhcCCHH
Q 013151 274 LATSRGYEDITLFLIQKGV----DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSD 346 (448)
Q Consensus 274 ~A~~~~~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~ 346 (448)
+|+..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 9999999999999999987 889999999999999999999999999999999998755 789999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcc
Q 013151 347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422 (448)
Q Consensus 347 ~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~ 422 (448)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.++++
T Consensus 165 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876
No 13
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=296.56 Aligned_cols=232 Identities=23% Similarity=0.300 Sum_probs=172.0
Q ss_pred chhhHHHHHHHHhhcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCH-HHHHHHHHcCCCCCC
Q 013151 185 DKQSFTNILEIYFCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDL-YQLKGLIRAGADPNK 263 (448)
Q Consensus 185 ~~~~~~~ll~~~p~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~-~~v~~Ll~~g~~~~~ 263 (448)
+..+..+++.........+++.+++.+..... +.....+..+..+.+||+.|+..++. .+++.|++.|+++|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~ 81 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLE------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV 81 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTC
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccc------cccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence 34556677777777777777777765443211 11223445667889999999998876 488999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHh
Q 013151 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVA 341 (448)
Q Consensus 264 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~ 341 (448)
+|.+|+||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+ |.||||+|+.
T Consensus 82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~ 161 (269)
T 4b93_B 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS 161 (269)
T ss_dssp CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998765 7799999999
Q ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCC-HHHHHHHHHh
Q 013151 342 RGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDA 420 (448)
Q Consensus 342 ~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~-~~~v~~Ll~~ 420 (448)
.|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++++ .+++++|.+.
T Consensus 162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~ 241 (269)
T 4b93_B 162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC 241 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998876 3555555555
Q ss_pred cc
Q 013151 421 EC 422 (448)
Q Consensus 421 ~~ 422 (448)
++
T Consensus 242 ~~ 243 (269)
T 4b93_B 242 VA 243 (269)
T ss_dssp --
T ss_pred ch
Confidence 44
No 14
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.5e-39 Score=295.84 Aligned_cols=214 Identities=21% Similarity=0.124 Sum_probs=197.8
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013151 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307 (448)
Q Consensus 228 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 307 (448)
.+..+..|.||||+|+..|+.+++++|+++|++++.. +|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence 4567788999999999999999999999999999888 49999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHcCCcccccC--C-chhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 013151 308 AIKCGHDGVTSLLVKEGASLNVDD--A-GSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLL 384 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~g~~~~~~~--~-~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~L 384 (448)
|+..|+.+++++|+++|++++..+ + .||||+|+..|+.+++++|+++|++.... ..|+||||+|+..|+.+++++|
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence 999999999999999999998766 4 69999999999999999999999887433 2899999999999999999999
Q ss_pred HHCCCCcCCCCCCCCCh-hHHHHhcCCHHHHHHHHHhccccccccc-cCCcchHHHHhhhhc
Q 013151 385 LEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAECTQLSEFH-YCSQGMIGIAENLLL 444 (448)
Q Consensus 385 l~~gad~~~~d~~g~tp-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~~~~~~~~l~~ 444 (448)
+++|++++.+|..|+|| ||+|+..|+.+++++|+++|+++..... ....+..++++.|+.
T Consensus 181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIE 242 (285)
T ss_dssp HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHH
T ss_pred HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHH
Confidence 99999999999999998 9999999999999999999999876643 356778899998874
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-37 Score=284.62 Aligned_cols=226 Identities=24% Similarity=0.310 Sum_probs=180.3
Q ss_pred hhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY 280 (448)
Q Consensus 201 ~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 280 (448)
...+..++..++.+.....+........ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence 3444445555554444444443332221 125567888999999999999999998888888888888899999998889
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCccccc------------CCchhHHHHHhcCCHHHH
Q 013151 281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD------------DAGSFLCTAVARGDSDFL 348 (448)
Q Consensus 281 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------------~~~~~l~~A~~~~~~~~v 348 (448)
.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. .+.||||.|+..|+.+++
T Consensus 85 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 99999999888888888888889999999888888999988888887743 366888888888888888
Q ss_pred HHHHHC-CCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHH-hcc
Q 013151 349 KRVLSN-GVDPSSRDYDHRTPLHVAASEGL----YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AEC 422 (448)
Q Consensus 349 ~~Ll~~-g~~~~~~d~~g~TpLh~A~~~~~----~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~~~ 422 (448)
++|+++ |++++.+|..|+||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|+
T Consensus 165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 244 (285)
T 1wdy_A 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244 (285)
T ss_dssp HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Confidence 888887 88888888888888888888888 888888888888888888888888888888888888888888 666
Q ss_pred ccccc
Q 013151 423 TQLSE 427 (448)
Q Consensus 423 ~~~~~ 427 (448)
+....
T Consensus 245 ~~~~~ 249 (285)
T 1wdy_A 245 EINDT 249 (285)
T ss_dssp CTTCC
T ss_pred Ccccc
Confidence 54443
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.7e-38 Score=286.91 Aligned_cols=237 Identities=20% Similarity=0.211 Sum_probs=201.6
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
|.+.++.++..+..+.....+..+ ...+..+..|.||||+|+..|+.++++.|+++|++++..|..|+||||+|+..|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 345556666656555555554433 345566778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCC
Q 013151 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVD 357 (448)
Q Consensus 280 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~ 357 (448)
+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 159 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159 (261)
T ss_dssp CHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 999999999999999864 569999999999999999999999999998764 67999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccc-------ccccc
Q 013151 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL-------SEFHY 430 (448)
Q Consensus 358 ~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~-------~~~~~ 430 (448)
++. +..|+||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.++ +++++|+++++.+. ...+.
T Consensus 160 ~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~ 236 (261)
T 2xai_A 160 VNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKC 236 (261)
T ss_dssp TTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTT
T ss_pred CCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHH
Confidence 995 889999999999999999999999999999999999999999999655 59999999876542 22344
Q ss_pred CCcchHHHHhhh
Q 013151 431 CSQGMIGIAENL 442 (448)
Q Consensus 431 ~~~~~~~~~~~l 442 (448)
.+.+.++.+..+
T Consensus 237 ~g~t~l~~~~~~ 248 (261)
T 2xai_A 237 FGIQQHHKITKL 248 (261)
T ss_dssp SCTTCGGGGGGS
T ss_pred hchhccccCccc
Confidence 455555555543
No 17
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=289.17 Aligned_cols=209 Identities=23% Similarity=0.262 Sum_probs=163.3
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 013151 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGAD--------PNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKF 300 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~ 300 (448)
+.+..+.++|+.||..|+.++|++|++.|++ ++..+..|.||||+|+..++. .++++|++.|+++|.+|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 3456778999999999999999999998875 456678899999999988765 5889999999999999999
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 013151 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLY 378 (448)
Q Consensus 301 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~ 378 (448)
|+||||+|+..|+.+++++|++.|++++..+ +.||++.|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999988754 77999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 379 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 379 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
+++++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+++...... +.+++++|
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~-G~TpL~~A 225 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR-QRTAVDCA 225 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT-SCCSGGGS
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC-CCCHHHHH
Confidence 9999999999999999999999999999999999999999999987655443 34444443
No 18
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.8e-37 Score=271.49 Aligned_cols=189 Identities=25% Similarity=0.333 Sum_probs=179.3
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013151 233 AELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 311 (448)
Q Consensus 233 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 311 (448)
..+.+|||.|+..|+.+.++.|++.+. +++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 346789999999999999999999876 8999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHH-HcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCc-----HHHHH
Q 013151 312 GHDGVTSLLV-KEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGL-----YLMAK 382 (448)
Q Consensus 312 ~~~~~v~~Ll-~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~TpLh~A~~~~~-----~~~v~ 382 (448)
|+.+++++|+ ..+.+++..+ +.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 5566776654 779999999999999999999999 9999999999999999999998 99999
Q ss_pred HHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhc
Q 013151 383 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421 (448)
Q Consensus 383 ~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~ 421 (448)
+|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999986
No 19
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-37 Score=283.77 Aligned_cols=227 Identities=25% Similarity=0.276 Sum_probs=205.8
Q ss_pred cchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013151 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR 278 (448)
Q Consensus 199 ~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 278 (448)
.+.+.++.++..+..++....+.... ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus 38 ~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 38 GGWTPLHNAVQMSREDIVELLLRHGA--DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence 34566777777666666655554433 3345667899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCChhHHHHHHHc-CCcccccC--CchhHHHHHhcCC-
Q 013151 279 GYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCTAVARGD- 344 (448)
Q Consensus 279 ~~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~--~~~~l~~A~~~~~- 344 (448)
|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++ |++++..+ +.||||+|+..++
T Consensus 116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 9999999999999999987 78899999999999999999999998 99888754 7899999999999
Q ss_pred ---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHh
Q 013151 345 ---SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420 (448)
Q Consensus 345 ---~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 420 (448)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred ccccccc
Q 013151 421 ECTQLSE 427 (448)
Q Consensus 421 ~~~~~~~ 427 (448)
|+++...
T Consensus 276 Ga~~~~~ 282 (285)
T 1wdy_A 276 GASTDCG 282 (285)
T ss_dssp SSCSCCS
T ss_pred CCCCCcc
Confidence 9987654
No 20
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.1e-37 Score=276.61 Aligned_cols=204 Identities=25% Similarity=0.268 Sum_probs=183.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 013151 235 LALRVNSAAYHGDLYQLKGLIRAGADPN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK 310 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~ 310 (448)
|.||||.|+..|+.++++.|++.|+++. ..+..|+||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 5789999999999999999999998865 48899999999999999999999999999 55555 78899999999999
Q ss_pred cCChhHHHHHHHcC--Cccccc--CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 013151 311 CGHDGVTSLLVKEG--ASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g--~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~ 386 (448)
.|+.+++++|+++| ++++.. .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 776654 47799999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCcCCCCCCCCChhHHHHhcCCHHHHHHHH-HhccccccccccCCcchHHHH
Q 013151 387 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 387 ~g-ad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~~ 439 (448)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|++...... .+.+++++|
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~-~g~t~l~~A 215 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVA 215 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT-TSCBGGGGC
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCcHHHHH
Confidence 99 999999999999999999999999999999 88987665544 445555554
No 21
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.5e-39 Score=289.17 Aligned_cols=198 Identities=22% Similarity=0.198 Sum_probs=181.8
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013151 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGA----DPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L 305 (448)
..+..|.||||+|+..|+.++++.|++.+. +++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356788999999999999999999998765 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHcCCcc------c--ccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcC
Q 013151 306 LEAIKCGHDGVTSLLVKEGASL------N--VDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDY-DHRTPLHVAASEG 376 (448)
Q Consensus 306 ~~A~~~~~~~~v~~Ll~~g~~~------~--~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~TpLh~A~~~~ 376 (448)
|+|+..|+.+++++|+++|++. + ...+.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~ 162 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999998753 2 23478999999999999999999999999999998 9999999999999
Q ss_pred cHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 377 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 377 ~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...
T Consensus 163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 213 (236)
T 1ikn_D 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213 (236)
T ss_dssp CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhc
Confidence 999999999999999999999999999999999999999999999988743
No 22
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.5e-38 Score=299.45 Aligned_cols=223 Identities=18% Similarity=0.115 Sum_probs=178.2
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 277 (448)
..+.+.++.++..+..+.....+..+ ...+..+..|.||||+|+..|+.+++++|+++|++++. .+|.||||+|+.
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~ 93 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHH
Confidence 44566777777777766666665543 33445566777788888888888888888887775443 467788888888
Q ss_pred cCCHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHHcC--ChhHHHHHHHcCCcccccC--C
Q 013151 278 RGYEDITLFLIQK----GVDINI-----------------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--A 332 (448)
Q Consensus 278 ~~~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~ 332 (448)
.|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|++++..+ +
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g 173 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTS
T ss_pred cCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCC
Confidence 8888888888877 666655 7778889999999988 8889999998888887755 6
Q ss_pred chhHHHHHhcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHh
Q 013151 333 GSFLCTAVARGDSDFLKRVLSNGVD-----PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 407 (448)
Q Consensus 333 ~~~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~ 407 (448)
.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~ 253 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR 253 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 7889999999999999999988888 88888889999999999999999999999999999889899999999999
Q ss_pred cCCHHHHHHHHHhcccc
Q 013151 408 CGNKNLIKLLEDAECTQ 424 (448)
Q Consensus 408 ~~~~~~v~~Ll~~~~~~ 424 (448)
.|+.+++++|+++|++.
T Consensus 254 ~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 254 AAMVLLTKELLQKTDVF 270 (364)
T ss_dssp TCCHHHHHHHHHHSCHH
T ss_pred hChHHHHHHHHHcCCch
Confidence 99999999999887654
No 23
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.1e-38 Score=300.66 Aligned_cols=227 Identities=20% Similarity=0.242 Sum_probs=197.2
Q ss_pred hcchhhhhHhhhccchhHHhhhhc------cccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLK------SDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSP 271 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 271 (448)
..+.+.++.++..+..+.....+. .+....++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 202 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence 456666666666555433322221 12334456677889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcC---ChhHHHHHHHcCCcccc----------cCCchh
Q 013151 272 LHLATSRGYEDITLFLIQKG---VDINIKDKFGNTPLLEAIKCG---HDGVTSLLVKEGASLNV----------DDAGSF 335 (448)
Q Consensus 272 L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~----------~~~~~~ 335 (448)
||+|+..|+.+++++|++++ ++++..|..|.||||+|+..+ +.+++++|+++|++++. ..+.||
T Consensus 203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~ 282 (373)
T 2fo1_E 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282 (373)
T ss_dssp HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence 99999999999999999988 799999999999999999998 78999999999999875 257899
Q ss_pred HHHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHH
Q 013151 336 LCTAVARGDSDFLKRVLSNG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 414 (448)
Q Consensus 336 l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v 414 (448)
||+|+..|+.+++++|++++ ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999875 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccc
Q 013151 415 KLLEDAECTQ 424 (448)
Q Consensus 415 ~~Ll~~~~~~ 424 (448)
++|++++++.
T Consensus 363 ~~Ll~~~a~~ 372 (373)
T 2fo1_E 363 DIFDRCRPER 372 (373)
T ss_dssp HHHHTTC---
T ss_pred HHHHhcCccc
Confidence 9999998753
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.7e-37 Score=275.62 Aligned_cols=205 Identities=30% Similarity=0.364 Sum_probs=190.4
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 312 (448)
.+.+|||.|+..|+.+.++.|++.+.. ++..+..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 356899999999999999999998755 6788999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 313 HDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 313 ~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 164 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence 9999999999999998755 67999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 391 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
++.+|..|+||||+|+..|+.+++++|+++|++.... +..+.+++++|
T Consensus 165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A 212 (231)
T 3aji_A 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NKEEKTPLQVA 212 (231)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHS
T ss_pred ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHH
Confidence 9999999999999999999999999999999987544 34455555555
No 25
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.8e-38 Score=288.83 Aligned_cols=193 Identities=21% Similarity=0.135 Sum_probs=180.0
Q ss_pred hhHHHHHHHhcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC------
Q 013151 235 LALRVNSAAYHGDLY----QLKGLIRAGADPNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------ 297 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~------ 297 (448)
|.||||.|+..|+.+ ++++|++.|++++. .|..|+||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 679999999999997 66777789999998 899999999999999 9999999999998877633
Q ss_pred -----CCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC---------------CchhHHHHHhcCCHHHHHHHHH---C
Q 013151 298 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCTAVARGDSDFLKRVLS---N 354 (448)
Q Consensus 298 -----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------------~~~~l~~A~~~~~~~~v~~Ll~---~ 354 (448)
|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 4789999999999999999999999999998865 7899999999999999999999 9
Q ss_pred CCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHCCCCc-------CCCCCCCCChhHHHHhcCCHHHHHHHH
Q 013151 355 GVDPSSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE 418 (448)
Q Consensus 355 g~~~~~~d~~g~TpLh~A~~--~~~~~-------~v~~Ll~~gad~-------~~~d~~g~tpl~~A~~~~~~~~v~~Ll 418 (448)
|+++|.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999 88888 999999999999 999999999999999999999999999
Q ss_pred Hhccccccc
Q 013151 419 DAECTQLSE 427 (448)
Q Consensus 419 ~~~~~~~~~ 427 (448)
++|++....
T Consensus 242 ~~g~~~~~~ 250 (256)
T 2etb_A 242 QREFSGAAA 250 (256)
T ss_dssp HHHHHHHHH
T ss_pred hCCCCCCCc
Confidence 999876543
No 26
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.7e-37 Score=291.80 Aligned_cols=245 Identities=22% Similarity=0.243 Sum_probs=200.6
Q ss_pred cchhhhhHhhhccchhHHhhhhccccccccccch-hhhhHHHHHHHhcCCHHHHHHHHHcCCCCC---------------
Q 013151 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHE-AELALRVNSAAYHGDLYQLKGLIRAGADPN--------------- 262 (448)
Q Consensus 199 ~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--------------- 262 (448)
.+.+.+..+++.++.++...++..+.+. +..+ ..|.||||+|+..|+.++|++|+++|++++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadv--n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCC--CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 4566778888888888877777655443 3333 347899999999999999999999887654
Q ss_pred ------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCh
Q 013151 263 ------------------KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHD 314 (448)
Q Consensus 263 ------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~ 314 (448)
..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 45667889999999999999999999999887654 34688999999999999
Q ss_pred hHHHHHHH-cCCcccccC--CchhHHHHHhcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q 013151 315 GVTSLLVK-EGASLNVDD--AGSFLCTAVARGD----SDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEA 387 (448)
Q Consensus 315 ~~v~~Ll~-~g~~~~~~~--~~~~l~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ 387 (448)
+++++|++ .|++++..+ +.++++.++..+. ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|++.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 99999996 488888755 6678887765443 3688899999999999999999999999999999999999985
Q ss_pred -CCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccc---cCCcchHHHHhhhhcc
Q 013151 388 -GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFH---YCSQGMIGIAENLLLL 445 (448)
Q Consensus 388 -gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 445 (448)
|++++.+|..|+||||+|++.|+.+++++|+++|++...... .+..+..++++.|+..
T Consensus 262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 899999999999999999999999999999999998754321 1446677888888753
No 27
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=284.24 Aligned_cols=220 Identities=20% Similarity=0.253 Sum_probs=193.5
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 277 (448)
..+.+.++.++..+..+.....+..+ ...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 44555566666655555554444433 3345667889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCC
Q 013151 278 RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNG 355 (448)
Q Consensus 278 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g 355 (448)
.|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|
T Consensus 135 ~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 135 SGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp HTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 999999999999999998654 59999999999999999999999999998754 779999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHh-ccc
Q 013151 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-ECT 423 (448)
Q Consensus 356 ~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-~~~ 423 (448)
++++. |..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+ ++.+++++|+++ |++
T Consensus 214 a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 214 ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS 279 (285)
T ss_dssp CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence 99995 899999999999999999999999999999999999999999999 456999999999 444
No 28
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5e-37 Score=275.88 Aligned_cols=220 Identities=25% Similarity=0.342 Sum_probs=197.5
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 277 (448)
..+.+.++.++..+..+.....+.... ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 86 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAK 86 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Confidence 345566666666666655555554433 344566789999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHC
Q 013151 278 RGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN 354 (448)
Q Consensus 278 ~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~ 354 (448)
.|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++
T Consensus 87 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 87 KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp TTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred cCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999998 8999999999999999999999999999999999988754 77999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHH
Q 013151 355 GVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 419 (448)
Q Consensus 355 g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~ 419 (448)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+.+..|++
T Consensus 167 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876666654
No 29
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=5.2e-37 Score=259.68 Aligned_cols=158 Identities=44% Similarity=0.630 Sum_probs=129.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q 013151 236 ALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG 315 (448)
Q Consensus 236 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 315 (448)
.++|+.||..|+.++|+.|+++|+|+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCC
Q 013151 316 VTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 395 (448)
Q Consensus 316 ~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d 395 (448)
++++|+++ |+++|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus 85 ~v~~Ll~~-------------------------------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d 133 (169)
T 4gpm_A 85 VVKLLISK-------------------------------GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133 (169)
T ss_dssp HHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHC-------------------------------cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 76666655 45566677777788888888888888888888888887777
Q ss_pred CCCCChhHHHHhcCCHHHHHHHHHhcccc
Q 013151 396 RWGNTPLDEGRMCGNKNLIKLLEDAECTQ 424 (448)
Q Consensus 396 ~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~ 424 (448)
..|+||||+|+.+|+.+++++|+++||+-
T Consensus 134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 134 SDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 77888888888888888888888777753
No 30
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-37 Score=285.53 Aligned_cols=213 Identities=23% Similarity=0.224 Sum_probs=176.4
Q ss_pred hcchhhhhHhhhccchhHHhhhhcccccc-ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITF-HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLAT 276 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 276 (448)
..+.+.++.++..+........+...... ..+..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 34556666666666665555554433332 14566788999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCC-----------------------------------------------CCCCCCCCCcHHHHHH
Q 013151 277 SRGYEDITLFLIQKGVD-----------------------------------------------INIKDKFGNTPLLEAI 309 (448)
Q Consensus 277 ~~~~~~~v~~Ll~~~~~-----------------------------------------------~~~~~~~g~t~L~~A~ 309 (448)
..|+.+++++|+++|++ ++..+..|.||||+|+
T Consensus 87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 166 (282)
T 1oy3_D 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166 (282)
T ss_dssp TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHH
Confidence 99999999999998765 6778889999999999
Q ss_pred HcCChhHHHHHHHcCCcccccC---CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 013151 310 KCGHDGVTSLLVKEGASLNVDD---AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLE 386 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~~~~~~---~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~ 386 (448)
..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 167 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 246 (282)
T 1oy3_D 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246 (282)
T ss_dssp HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999999865 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCChhHHHHhcCC
Q 013151 387 AGASVFTKDRWGNTPLDEGRMCGN 410 (448)
Q Consensus 387 ~gad~~~~d~~g~tpl~~A~~~~~ 410 (448)
+|++++.+|..|.||+++|.....
T Consensus 247 ~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 247 HGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TTCCCCCCC---------------
T ss_pred cCCCcCcCCCcccccccccCCccc
Confidence 999999999999999999987664
No 31
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-36 Score=296.98 Aligned_cols=239 Identities=24% Similarity=0.293 Sum_probs=201.0
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
+.+.++.++..+..++....+..+. ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 146 g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 223 (437)
T 1n11_A 146 GFTPLHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC
Confidence 3445555555555555444444332 33445667889999999999999999999999999988889999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCC
Q 013151 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVD 357 (448)
Q Consensus 280 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~ 357 (448)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++
T Consensus 224 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 303 (437)
T 1n11_A 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999998887654 67899999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHH
Q 013151 358 PSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIG 437 (448)
Q Consensus 358 ~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 437 (448)
++.+|..|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+.+|+.+++++|+++|+++..... .+.++++
T Consensus 304 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~l~ 382 (437)
T 1n11_A 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-DGTTPLA 382 (437)
T ss_dssp TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS-SSCCHHH
T ss_pred CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC-CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988765443 4455566
Q ss_pred HHhh
Q 013151 438 IAEN 441 (448)
Q Consensus 438 ~~~~ 441 (448)
+|..
T Consensus 383 ~A~~ 386 (437)
T 1n11_A 383 IAKR 386 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 32
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.2e-37 Score=286.26 Aligned_cols=201 Identities=21% Similarity=0.179 Sum_probs=175.4
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC---
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIR----AGADPN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI--- 294 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~--- 294 (448)
...+..|.||||.|+..|+.++|+.|++ .+.+++ ..+..|+||||+|+.. |+.+++++|+++|+++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 3456788999999999999999998887 566665 4588999999999987 9999999999988653
Q ss_pred ----C----CCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC----------------CchhHHHHHhcCCHHHHHH
Q 013151 295 ----N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKR 350 (448)
Q Consensus 295 ----~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~~ 350 (448)
+ ..|..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 2 256789999999999999999999999999998764 7899999999999999999
Q ss_pred HHH---CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCcC-------CCCCCCCChhHHHHhcCCH
Q 013151 351 VLS---NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNK 411 (448)
Q Consensus 351 Ll~---~g~~~~~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~~-------~~d~~g~tpl~~A~~~~~~ 411 (448)
|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+.
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 999 999999999999999999999998 899999999999997 4899999999999999999
Q ss_pred HHHHHHHHhcc-ccccccc
Q 013151 412 NLIKLLEDAEC-TQLSEFH 429 (448)
Q Consensus 412 ~~v~~Ll~~~~-~~~~~~~ 429 (448)
+++++|+++|+ +|.....
T Consensus 247 ~iv~~Ll~~ga~dp~~~~~ 265 (273)
T 2pnn_A 247 GVLAYILQREIHEPECRHA 265 (273)
T ss_dssp HHHHHHHHHHTC-------
T ss_pred HHHHHHHHCCCCCchhhhh
Confidence 99999999999 5554443
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1e-36 Score=283.69 Aligned_cols=197 Identities=28% Similarity=0.372 Sum_probs=181.9
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 231 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 310 (448)
.+..+.||||.||..|+.++++.|+++|+++|..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHC-CCC--------------------------CCCC
Q 013151 311 CGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVD--------------------------PSSR 361 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~-g~~--------------------------~~~~ 361 (448)
.|+.+++++|+++|++++..+ +.||||+|+..++.++++.++.. |.+ ....
T Consensus 116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195 (299)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhh
Confidence 999999999999999988755 77999999999999999877742 433 2346
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 362 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 362 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence 678999999999999999999999999999999999999999999999999999999999986544
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.1e-36 Score=270.04 Aligned_cols=216 Identities=21% Similarity=0.164 Sum_probs=188.1
Q ss_pred hhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 013151 201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAG--ADPNK-TDYDGRSPLHLATS 277 (448)
Q Consensus 201 ~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~L~~A~~ 277 (448)
...++.++..++.+.....+...... ....+..|.||||+|+..|+.+++++|+++| ++++. .+..|+||||+|+.
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 34555555555555554444433222 2335778999999999999999999999999 55555 78899999999999
Q ss_pred cCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHH
Q 013151 278 RGYEDITLFLIQKG--VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS 353 (448)
Q Consensus 278 ~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~ 353 (448)
.|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 8899999999999999999999999999999999998765 7899999999999999999999
Q ss_pred CC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHh
Q 013151 354 NG-VDPSSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420 (448)
Q Consensus 354 ~g-~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll-~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 420 (448)
+| ++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|+||+|+|+.. +++++|+++
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99 999999999999999999999999999999 89999999999999999999764 567777653
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=269.38 Aligned_cols=223 Identities=23% Similarity=0.231 Sum_probs=178.6
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHc
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSR 278 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~ 278 (448)
+...+..++..+..+.....+..+. ..+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGY--DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred cchHHHHHHHcCChHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 3344555555555555544444332 334456678889999999999999999999888877554 4488999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCC-HHHHHHHHHCC
Q 013151 279 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGD-SDFLKRVLSNG 355 (448)
Q Consensus 279 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~-~~~v~~Ll~~g 355 (448)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+|+..++ .+++++|++.|
T Consensus 87 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 99999999999888888888888999999999999999999999888887654 6688998886665 78888888999
Q ss_pred CCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccc
Q 013151 356 VDPSSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 424 (448)
Q Consensus 356 ~~~~~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~ 424 (448)
++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++..
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 98888886 8889999999999999999999999999888888999999999999999999998888754
No 36
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=291.58 Aligned_cols=227 Identities=22% Similarity=0.218 Sum_probs=162.5
Q ss_pred cchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013151 199 DGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSR 278 (448)
Q Consensus 199 ~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 278 (448)
.+.+.++.++..+..++....+.... ..+..+..+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 34455555555555555444443322 2233455677788888888888888888888877777777788888888888
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCccccc--CCchhHHHHHhcCCHHHHHHHHHCCC
Q 013151 279 GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCTAVARGDSDFLKRVLSNGV 356 (448)
Q Consensus 279 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~l~~A~~~~~~~~v~~Ll~~g~ 356 (448)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+.. .+.||||+|+..|+.+++++|+++|+
T Consensus 91 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 170 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 8888888888888777777777778888887777777777777777766543 35677777777777777777777777
Q ss_pred CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 357 DPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 357 ~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++....
T Consensus 171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~ 241 (437)
T 1n11_A 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777654433
No 37
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-37 Score=293.19 Aligned_cols=235 Identities=18% Similarity=0.171 Sum_probs=197.5
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccch-hhhhHHHHHHHhcCCHHHHHHHH--------HcCCCCCCCCCCC
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHE-AELALRVNSAAYHGDLYQLKGLI--------RAGADPNKTDYDG 268 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~g 268 (448)
..+...++.+..++.. +...... ...+..+ ..|.||||+|+..|+.++++.|+ +.|+++|.+|..|
T Consensus 92 ~~g~t~L~~Aa~~~~~-~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g 166 (373)
T 2fo1_E 92 PESPIKLHTEAAGSYA-ITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166 (373)
T ss_dssp --CCCHHHHHHHSSSC-CCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred CCCccHHHHHhcCCch-HHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 4455556666554332 2211111 1233344 67899999999999998887776 7899999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC---Ccccc--cCCchhHHHHHhcC
Q 013151 269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG---ASLNV--DDAGSFLCTAVARG 343 (448)
Q Consensus 269 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~--~~~~~~l~~A~~~~ 343 (448)
.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++. ..+.||||+|+..+
T Consensus 167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246 (373)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987 56665 45789999999998
Q ss_pred ---CHHHHHHHHHCCCCCCC--------CCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCcCCCCCCCCChhHHHHhcCCH
Q 013151 344 ---DSDFLKRVLSNGVDPSS--------RDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNK 411 (448)
Q Consensus 344 ---~~~~v~~Ll~~g~~~~~--------~d~~g~TpLh~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpl~~A~~~~~~ 411 (448)
+.+++++|+++|++++. +|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.
T Consensus 247 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~ 326 (373)
T 2fo1_E 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI 326 (373)
T ss_dssp STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH
Confidence 89999999999999986 6779999999999999999999999875 99999999999999999999999
Q ss_pred HHHHHHHHhccccccccccCCcchHHH
Q 013151 412 NLIKLLEDAECTQLSEFHYCSQGMIGI 438 (448)
Q Consensus 412 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 438 (448)
+++++|+++|++....... +.+++++
T Consensus 327 ~iv~~Ll~~gad~~~~d~~-g~t~l~~ 352 (373)
T 2fo1_E 327 EVVMYLIQQGASVEAVDAT-DHTARQL 352 (373)
T ss_dssp HHHHHHHHTTCCSSCCCSS-SCCHHHH
T ss_pred HHHHHHHHcCCCccCCCCC-CCCHHHH
Confidence 9999999999987655433 3444333
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.8e-36 Score=279.92 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=197.9
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATS 277 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 277 (448)
..+.+.++.++..+..+.....+..+...... +|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+.
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence 44666777777777777766666654444332 48999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHcCChhHHHHHHHcCCccccc-CCchhHHHHHhcCCHHHHHHHHHCC
Q 013151 278 RGYEDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCTAVARGDSDFLKRVLSNG 355 (448)
Q Consensus 278 ~~~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~l~~A~~~~~~~~v~~Ll~~g 355 (448)
.|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|++.... .+.||||+|+..|+.+++++|+++|
T Consensus 105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 999999999999999999999999 79999999999999999999999988665 7889999999999999999999999
Q ss_pred CCCCCCCCCCCcH-HHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 356 VDPSSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 356 ~~~~~~d~~g~Tp-Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
++++.+|..|+|| ||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++++|+++|++..+.
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999998 9999999999999999999999999883 568899999999999999876544
No 39
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=263.64 Aligned_cols=210 Identities=25% Similarity=0.265 Sum_probs=190.2
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLE 307 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~ 307 (448)
...+..+.++|+.|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 3456788899999999999999999999999999999999999999999999999999999999988554 459999999
Q ss_pred HHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCc-HHHHHHH
Q 013151 308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGL-YLMAKLL 384 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~-~~~v~~L 384 (448)
|+..|+.+++++|+++|++++..+ +.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..++ .+++++|
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 999999999999999999998754 6799999999999999999999999999999999999999997776 8999999
Q ss_pred HHCCCCcCCCCC-CCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 385 LEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 385 l~~gad~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
++.|++++..+. .|.||||+|+..|+.+++++|+++|++...... .+.+++++|
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A 217 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESALDLA 217 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT-TSCBHHHHH
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHH
Confidence 999999999997 999999999999999999999999988765443 333444433
No 40
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=8e-37 Score=278.61 Aligned_cols=194 Identities=20% Similarity=0.152 Sum_probs=175.5
Q ss_pred hhhHHHHHHHhcCCHHHHHHHH----HcCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 013151 234 ELALRVNSAAYHGDLYQLKGLI----RAGADPNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD--------- 293 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~--------- 293 (448)
.+.++||.|+..|+.+.++.|+ +.|++++..+ ..|+||||+|+ ..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 4678999999999999655555 4899998665 77999999999 67999999999998744
Q ss_pred --CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC----------------CchhHHHHHhcCCHHHHHHHHH--
Q 013151 294 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCTAVARGDSDFLKRVLS-- 353 (448)
Q Consensus 294 --~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~l~~A~~~~~~~~v~~Ll~-- 353 (448)
.+..|..|+||||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 44556689999999999999999999999999999875 7899999999999999999999
Q ss_pred -CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCc-------CCCCCCCCChhHHHHhcCCHHHHHH
Q 013151 354 -NGVDPSSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL 416 (448)
Q Consensus 354 -~g~~~~~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~gad~-------~~~d~~g~tpl~~A~~~~~~~~v~~ 416 (448)
+|++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 243 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999887 79999999999999 6799999999999999999999999
Q ss_pred HHHhccccccc
Q 013151 417 LEDAECTQLSE 427 (448)
Q Consensus 417 Ll~~~~~~~~~ 427 (448)
|+++|+++...
T Consensus 244 Ll~~g~~~~~~ 254 (260)
T 3jxi_A 244 IIRREIADAAA 254 (260)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHhCCCcccc
Confidence 99999887654
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-36 Score=278.18 Aligned_cols=192 Identities=27% Similarity=0.365 Sum_probs=173.8
Q ss_pred cccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013151 228 IGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307 (448)
Q Consensus 228 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 307 (448)
++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 145 (299)
T 1s70_B 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145 (299)
T ss_dssp TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHc-CCcccc----------------------------cCCchhHHHHHhcCCHHHHHHHHHCCCCC
Q 013151 308 AIKCGHDGVTSLLVKE-GASLNV----------------------------DDAGSFLCTAVARGDSDFLKRVLSNGVDP 358 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~-g~~~~~----------------------------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~ 358 (448)
|+..++.++++.++.. +.+++. ..+.||||+|+..|+.+++++|+++|+++
T Consensus 146 A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~ 225 (299)
T 1s70_B 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225 (299)
T ss_dssp CCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred HHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC
Confidence 9999999999877753 444332 35789999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHh
Q 013151 359 SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420 (448)
Q Consensus 359 ~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 420 (448)
+.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++... +.++.+++.
T Consensus 226 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~-~~l~~l~~~ 286 (299)
T 1s70_B 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL-GYLEELQKK 286 (299)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG-HHHHHHHHH
T ss_pred CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987544 444444443
No 42
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=275.27 Aligned_cols=202 Identities=29% Similarity=0.327 Sum_probs=186.7
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 307 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~ 307 (448)
...+..+.++||.|+..|+.+.++.|+.. +.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 34556788999999999999999999875 88999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCC-----------------------
Q 013151 308 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD----------------------- 362 (448)
Q Consensus 308 A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d----------------------- 362 (448)
|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++..+
T Consensus 98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 999999999999999999998765 6799999999999999999999999988654
Q ss_pred -------------------------------CCCCcHHHHHHHc---CcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhc
Q 013151 363 -------------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 408 (448)
Q Consensus 363 -------------------------------~~g~TpLh~A~~~---~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~ 408 (448)
..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 257 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER 257 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc
Confidence 5577999999999 668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccccccc
Q 013151 409 GNKNLIKLLEDAECTQLSEFHY 430 (448)
Q Consensus 409 ~~~~~v~~Ll~~~~~~~~~~~~ 430 (448)
|+.+++++|+++|++.......
T Consensus 258 g~~~~v~~Ll~~ga~~n~~d~~ 279 (351)
T 3utm_A 258 AHNDVMEVLHKHGAKMNALDSL 279 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCHHHHHHHHHCCCCCCCcCCC
Confidence 9999999999999987665543
No 43
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.4e-35 Score=262.29 Aligned_cols=199 Identities=25% Similarity=0.263 Sum_probs=177.7
Q ss_pred CCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC
Q 013151 246 GDLYQLKGLIRAGADPNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 324 (448)
Q Consensus 246 g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 324 (448)
|+.+++++|+++|++++.. |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6788899999999998765 899999999999999999999999999999999999999999999999999999999998
Q ss_pred C-cccc--cCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCCh
Q 013151 325 A-SLNV--DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 401 (448)
Q Consensus 325 ~-~~~~--~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 401 (448)
. +++. ..+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 6 5555 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCHHHHHHHHHhccccccccccC--------CcchHHHHhhhhc
Q 013151 402 LDEGRMCGNKNLIKLLEDAECTQLSEFHYC--------SQGMIGIAENLLL 444 (448)
Q Consensus 402 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 444 (448)
||+|+..|+.+++++|+++|++........ ..+..+++++|+.
T Consensus 162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999876544332 2334455555553
No 44
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.7e-34 Score=270.50 Aligned_cols=194 Identities=25% Similarity=0.316 Sum_probs=176.7
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCC
Q 013151 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKT----------DYDGRSPLHLATSRGYEDITLFLIQ-KGVDIN 295 (448)
Q Consensus 227 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~ 295 (448)
..+..+..|.||||+|+..|+.++++.|+++|++++.. +..|.||||+|+..|+.+++++|++ .|++++
T Consensus 117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n 196 (337)
T 4g8k_A 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 196 (337)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence 44566788999999999999999999999999987653 4568999999999999999999996 699999
Q ss_pred CCCCCCCcHHHHHHHcCC----hhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHC-CCCCCCCCCCCCcH
Q 013151 296 IKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSN-GVDPSSRDYDHRTP 368 (448)
Q Consensus 296 ~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~Tp 368 (448)
.+|..|.||++.++..+. ..++++|+++|++++..+ |.||||+|+..|+.++++.|++. |+++|.+|.+|+||
T Consensus 197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp 276 (337)
T 4g8k_A 197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 276 (337)
T ss_dssp CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence 999999999999887665 358899999999998765 77999999999999999999985 89999999999999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccc
Q 013151 369 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425 (448)
Q Consensus 369 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~ 425 (448)
||+|+..|+.++|++|+++|+|+|.+ ||||+|+.+|+.++|++|+++||++.
T Consensus 277 L~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 277 LLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 99999999999999999999999764 59999999999999999999999875
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=6.8e-35 Score=267.93 Aligned_cols=190 Identities=21% Similarity=0.247 Sum_probs=178.9
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH
Q 013151 233 AELALRVNSAAYHGDLYQLKGLIRAGAD--PNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI 309 (448)
Q Consensus 233 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~ 309 (448)
....+++|.|+..|+.+.++.+++.+.+ +|..|.+|+||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 3456788999999999999999988766 89999999999999999999999999999998 99999999999999999
Q ss_pred -----HcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 013151 310 -----KCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 382 (448)
Q Consensus 310 -----~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~ 382 (448)
..++.+++++|++.|.+.+..+ |.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 6688999999999998877644 789999999999999999999999999999999999999999999999999
Q ss_pred HHHH-CCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcc
Q 013151 383 LLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422 (448)
Q Consensus 383 ~Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~ 422 (448)
+|++ .|+|++.+|..|+||||+|+..|+.+++++|++++.
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 9999 899999999999999999999999999999999864
No 46
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.2e-33 Score=245.32 Aligned_cols=162 Identities=28% Similarity=0.366 Sum_probs=137.0
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHH
Q 013151 261 PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCT 338 (448)
Q Consensus 261 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~ 338 (448)
+|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+ +.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 35567777777777777777777777777777777777777777777777777777777777777776544 5677777
Q ss_pred HHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHH
Q 013151 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 418 (448)
Q Consensus 339 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll 418 (448)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 187 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 77788888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc
Q 013151 419 DAEC 422 (448)
Q Consensus 419 ~~~~ 422 (448)
++|.
T Consensus 188 ~~~~ 191 (192)
T 2rfm_A 188 EVRR 191 (192)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9873
No 47
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.8e-34 Score=274.96 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=189.2
Q ss_pred hhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHc----CCCCCC--------------
Q 013151 202 KVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRA----GADPNK-------------- 263 (448)
Q Consensus 202 ~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~----g~~~~~-------------- 263 (448)
+.++.++..+..++....+.... ......|.||||+|+..|+.+++++|++. |.+++.
T Consensus 55 t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (364)
T 3ljn_A 55 TALHLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130 (364)
T ss_dssp CHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEET
T ss_pred cHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhc
Confidence 34444444444444444444333 22234789999999999999999999998 887766
Q ss_pred ---CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCc-----ccccC--
Q 013151 264 ---TDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-----LNVDD-- 331 (448)
Q Consensus 264 ---~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~-- 331 (448)
.+..|.||||+|+..| +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++ ++..+
T Consensus 131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210 (364)
T ss_dssp TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence 7889999999999999 99999999999999999999999999999999999999999999988 77644
Q ss_pred CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCC------------CCCCCC
Q 013151 332 AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT------------KDRWGN 399 (448)
Q Consensus 332 ~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~------------~d~~g~ 399 (448)
+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|+
T Consensus 211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (364)
T 3ljn_A 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290 (364)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999877533 566789
Q ss_pred ChhHHHHhcCCHHHHHHHHHhccccc
Q 013151 400 TPLDEGRMCGNKNLIKLLEDAECTQL 425 (448)
Q Consensus 400 tpl~~A~~~~~~~~v~~Ll~~~~~~~ 425 (448)
||++.|+..|+.+.+..|++.+.+..
T Consensus 291 ~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 291 LDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp CTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhccCHHHHHHHHHHHHHHH
Confidence 99999999999988888888776543
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.1e-34 Score=258.71 Aligned_cols=212 Identities=21% Similarity=0.232 Sum_probs=183.5
Q ss_pred hcchhhhhHhhhccchhHHhhhhccccc--cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013151 198 CDGRKVLTNLLEGKESNLRLKQLKSDIT--FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLA 275 (448)
Q Consensus 198 ~~~~~il~~ll~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 275 (448)
..+.+.++.++..+........+..... ..++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 85 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 4567777777776666555444433222 24566778899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCccccc---CCchhHHHHHhcCCHH
Q 013151 276 TSRGYEDITLFLIQKGVD------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCTAVARGDSD 346 (448)
Q Consensus 276 ~~~~~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A~~~~~~~ 346 (448)
+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.. .|.||||+|+..|+.+
T Consensus 86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~ 165 (236)
T 1ikn_D 86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165 (236)
T ss_dssp HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 999999999999999876 4677889999999999999999999999999999875 5689999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcC--CCCCCCCChhHHHHhcC
Q 013151 347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF--TKDRWGNTPLDEGRMCG 409 (448)
Q Consensus 347 ~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpl~~A~~~~ 409 (448)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. .++..|.||.+.+....
T Consensus 166 ~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred HHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999876 78899999988776543
No 49
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=1.3e-32 Score=233.59 Aligned_cols=160 Identities=36% Similarity=0.529 Sum_probs=134.6
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 231 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 310 (448)
....+.++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 34566788888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred cCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 90 ~~~~~~~~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 138 (169)
T 2y1l_E 90 FGHLEIVEVLLK-------------------------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138 (169)
T ss_dssp TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 776666665555 4556677888899999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHhcCCHHHHHHHHHhc
Q 013151 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421 (448)
Q Consensus 391 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~ 421 (448)
++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 139 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999999999998876
No 50
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=6.9e-33 Score=234.88 Aligned_cols=162 Identities=27% Similarity=0.331 Sum_probs=124.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 013151 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 314 (448)
+.||||.|+..|+.++++.|++.|.+++..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred hHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCC
Q 013151 315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394 (448)
Q Consensus 315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 394 (448)
+ ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 83 ~-------------------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 131 (167)
T 3v31_A 83 D-------------------------------IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131 (167)
T ss_dssp H-------------------------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred H-------------------------------HHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 4 555555556677888899999999999999999999999999999999
Q ss_pred CCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 395 DRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 395 d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
|..|+||||+|+..|+.+++++|++++++....
T Consensus 132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~ 164 (167)
T 3v31_A 132 TDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164 (167)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775544
No 51
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3.6e-33 Score=237.85 Aligned_cols=161 Identities=29% Similarity=0.365 Sum_probs=117.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 013151 236 ALRVNSAAYHGDLYQLKGLIRAGAD-PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314 (448)
Q Consensus 236 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 314 (448)
.+|||.|+..|+.++++.|++.+.+ ++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 4678888888888888888887766 677777888888888888888888888888888887777777777777777766
Q ss_pred hHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCC
Q 013151 315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394 (448)
Q Consensus 315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 394 (448)
+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 83 ~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 131 (172)
T 3v30_A 83 DIVGLLLERD-------------------------------VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131 (172)
T ss_dssp HHHHHHHTTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 6666666554 455566666677777777777777777777777777777
Q ss_pred CCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 395 DRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 395 d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
|..|+||||+|+..|+.+++++|++++++....
T Consensus 132 ~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~ 164 (172)
T 3v30_A 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164 (172)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 777777777777777777777777766654443
No 52
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=6.7e-33 Score=233.66 Aligned_cols=158 Identities=27% Similarity=0.390 Sum_probs=126.0
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 313 (448)
...+|||.|+..|+.++++.|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34677888888888888888887777777777778888888777 77888888888877777777777777777777666
Q ss_pred hhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC-cC
Q 013151 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VF 392 (448)
Q Consensus 314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-~~ 392 (448)
.+++++|+ ++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++
T Consensus 83 ~~~v~~Ll-------------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 131 (162)
T 1ihb_A 83 LDTLQTLL-------------------------------EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131 (162)
T ss_dssp HHHHHHHH-------------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHH-------------------------------HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence 55555555 45566777888899999999999999999999999988 58
Q ss_pred CCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 393 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 393 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 8899999999999999999999999999875
No 53
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.8e-32 Score=243.20 Aligned_cols=173 Identities=23% Similarity=0.232 Sum_probs=156.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCccc-----c--cCCchhHHH
Q 013151 267 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-----V--DDAGSFLCT 338 (448)
Q Consensus 267 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----~--~~~~~~l~~ 338 (448)
.|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++. . .++.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 589999999999999999999997 99999999999999999999999999999999998863 2 357899999
Q ss_pred HHhcCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHH
Q 013151 339 AVARGDSDFLKRVLSNGVDPSSRDY-------------DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 405 (448)
Q Consensus 339 A~~~~~~~~v~~Ll~~g~~~~~~d~-------------~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 405 (448)
|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998876 799999999999999999999999999999999999999999
Q ss_pred HhcCCHHHH----HHHHHhccccc-----cccccCCcchHHHH
Q 013151 406 RMCGNKNLI----KLLEDAECTQL-----SEFHYCSQGMIGIA 439 (448)
Q Consensus 406 ~~~~~~~~v----~~Ll~~~~~~~-----~~~~~~~~~~~~~~ 439 (448)
+..|+.+++ ++|+++|++.. ...+..+.+++++|
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A 204 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence 999999988 99999999764 23344445544444
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-33 Score=263.32 Aligned_cols=193 Identities=17% Similarity=0.180 Sum_probs=122.4
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---
Q 013151 238 RVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--- 313 (448)
Q Consensus 238 ~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~--- 313 (448)
.+|.|+..+..++++.|++.|+++|. +|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~ 179 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence 45666666666777777777777777 67777777777777777777777777777777777777777777777776
Q ss_pred hhHHHHHHHcC-Cccccc--CCchhHHHHHh----cCCHHHHHHHHHC--------------------CCCCCCCCCCCC
Q 013151 314 DGVTSLLVKEG-ASLNVD--DAGSFLCTAVA----RGDSDFLKRVLSN--------------------GVDPSSRDYDHR 366 (448)
Q Consensus 314 ~~~v~~Ll~~g-~~~~~~--~~~~~l~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g~ 366 (448)
.++++.|++.+ ++++.. .|.||||+|+. .|+.+++++|++. |++++.+|..|+
T Consensus 180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~ 259 (327)
T 1sw6_A 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259 (327)
T ss_dssp TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence 56666666665 444443 36677777777 6777777777765 677777777777
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccccccCCcchHHHH
Q 013151 367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEFHYCSQGMIGIA 439 (448)
Q Consensus 367 TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 439 (448)
||||+|+. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|++...... .+.+++++|
T Consensus 260 t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~-~G~TpL~~A 323 (327)
T 1sw6_A 260 DSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK-SGLRPVDFG 323 (327)
T ss_dssp CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT-TSCCGGGGT
T ss_pred ChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHH
Confidence 77777764 6777766 4666777777777777777777777777777776544433 334444443
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=2.8e-32 Score=232.35 Aligned_cols=139 Identities=23% Similarity=0.243 Sum_probs=105.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHH
Q 013151 269 RSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF 347 (448)
Q Consensus 269 ~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~ 347 (448)
.||||.|+..|+.++++.|++.+.+ ++..|..|+||||+|+..|+. ++
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-------------------------------~~ 51 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEI-------------------------------ET 51 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCH-------------------------------HH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCH-------------------------------HH
Confidence 4566666666666666666665554 555555566666655555554 55
Q ss_pred HHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 348 v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....
T Consensus 52 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 131 (172)
T 3v30_A 52 VRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131 (172)
T ss_dssp HHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 55555556677888899999999999999999999999999999999999999999999999999999999999887655
Q ss_pred cccCCcchHHHH
Q 013151 428 FHYCSQGMIGIA 439 (448)
Q Consensus 428 ~~~~~~~~~~~~ 439 (448)
... +.+++++|
T Consensus 132 ~~~-g~t~l~~A 142 (172)
T 3v30_A 132 ADS-GYTPMDLA 142 (172)
T ss_dssp CTT-SCCHHHHH
T ss_pred CCC-CCCHHHHH
Confidence 443 34444443
No 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.9e-32 Score=229.79 Aligned_cols=158 Identities=25% Similarity=0.276 Sum_probs=135.9
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
..+.+..++..++.+.....+... ...+..+..|.||||+|+. |+.+++++|+++|++++.++..|+||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 345667777777777776666544 4446667889999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCC
Q 013151 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359 (448)
Q Consensus 280 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~ 359 (448)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .++
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------~~~ 131 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------------------------NVG 131 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------------------------CTT
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------------------------CCC
Confidence 99999999999999999999999999999999888888888777654 146
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 360 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.+|..|.||||+|+..|+.+++++|+++|||
T Consensus 132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 132 HRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 7788899999999999999999999999986
No 57
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-31 Score=223.80 Aligned_cols=151 Identities=32% Similarity=0.442 Sum_probs=129.8
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 013151 235 LALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 314 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 314 (448)
..++|+.|+..|+.++++.|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 4678888888888888888888888776 577888888888888888888888888888888888888888888877766
Q ss_pred hHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCC
Q 013151 315 GVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394 (448)
Q Consensus 315 ~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 394 (448)
+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus 81 ~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 81 NIVEVLLKH-------------------------------GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp HHHHHHHTT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 666666554 5566778888999999999999999999999999999999
Q ss_pred CCCCCChhHHHHhcCCHHHHHHH
Q 013151 395 DRWGNTPLDEGRMCGNKNLIKLL 417 (448)
Q Consensus 395 d~~g~tpl~~A~~~~~~~~v~~L 417 (448)
|..|+||||+|+..|+.+++++|
T Consensus 130 ~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 130 SKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999987
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.98 E-value=2.5e-32 Score=236.95 Aligned_cols=164 Identities=25% Similarity=0.275 Sum_probs=156.4
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 013151 225 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP 304 (448)
Q Consensus 225 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 304 (448)
....+..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q 013151 305 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAK 382 (448)
Q Consensus 305 L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~ 382 (448)
||+|+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 999999999999999999999998765 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHCC
Q 013151 383 LLLEAG 388 (448)
Q Consensus 383 ~Ll~~g 388 (448)
+|+++|
T Consensus 185 ~Ll~~~ 190 (192)
T 2rfm_A 185 IFTEVR 190 (192)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999865
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=5.6e-32 Score=229.26 Aligned_cols=160 Identities=26% Similarity=0.332 Sum_probs=137.7
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
+...++.++..++.+.....+... ...+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 556778888888877776666554 345667789999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCC
Q 013151 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359 (448)
Q Consensus 280 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~ 359 (448)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ |++++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------------g~~~~ 129 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-------------------------------GADPT 129 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------------------------------TCCTT
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------------------CCCCC
Confidence 99999999999999999999999999999888777666666554 55667
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcC
Q 013151 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 392 (448)
Q Consensus 360 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~ 392 (448)
.+|..|.||||+|+..|+.+++++|++++++..
T Consensus 130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 788889999999999999999999998876543
No 60
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.98 E-value=8.4e-32 Score=227.71 Aligned_cols=159 Identities=35% Similarity=0.473 Sum_probs=133.4
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 310 (448)
+.++.++||.|+..|+.++++.|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 46778888888888888888888874 55677777888888888888888888888888888888888888888888877
Q ss_pred cCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 85 ~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 133 (165)
T 3twr_A 85 YGHYEVAELLVK-------------------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133 (165)
T ss_dssp TTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHh-------------------------------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 766666655555 4566777888999999999999999999999999999
Q ss_pred cCCCCCCCCChhHHHHhcCCHHHHHHHHHhcc
Q 013151 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAEC 422 (448)
Q Consensus 391 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~ 422 (448)
++.+|..|+||||+|+. |+.+++++|+++|+
T Consensus 134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999877 89999999999886
No 61
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=2.9e-31 Score=231.95 Aligned_cols=188 Identities=24% Similarity=0.368 Sum_probs=164.4
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
+.+.+..++..++.......+.. .....+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 33444555555554444444332 22345556778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC-CcccccC--CchhHHHHHhcCC-----HHHHHH
Q 013151 280 YEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCTAVARGD-----SDFLKR 350 (448)
Q Consensus 280 ~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~--~~~~l~~A~~~~~-----~~~v~~ 350 (448)
+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++..+ +.||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 567799999999999999999999999999999999 7877654 7899999999998 999999
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q 013151 351 VLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388 (448)
Q Consensus 351 Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g 388 (448)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999987
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.98 E-value=1e-34 Score=258.93 Aligned_cols=186 Identities=21% Similarity=0.224 Sum_probs=172.7
Q ss_pred ccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013151 229 GKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 308 (448)
Q Consensus 229 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 308 (448)
...+..+.||||.|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A 94 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHcCCccccc---CCchhHHHH--HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 013151 309 IKCGHDGVTSLLVKEGASLNVD---DAGSFLCTA--VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383 (448)
Q Consensus 309 ~~~~~~~~v~~Ll~~g~~~~~~---~~~~~l~~A--~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~ 383 (448)
+..|+.+++++|+++|++++.. +|.||||+| +..|+.+++++|+++|++++.+|..|.||+|.++..+.. ++
T Consensus 95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---~~ 171 (229)
T 2vge_A 95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---EL 171 (229)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---BC
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---cc
Confidence 9999999999999999999874 578999999 999999999999999999999999999999976655433 67
Q ss_pred HHHCCCC--cCCCCCCCCChhHHHHhcCCHHHHHHH
Q 013151 384 LLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLL 417 (448)
Q Consensus 384 Ll~~gad--~~~~d~~g~tpl~~A~~~~~~~~v~~L 417 (448)
|++.|++ ++.+|..|+||||+|+.+|+.++|+.+
T Consensus 172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred CccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 8889988 778999999999999999999988754
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.8e-32 Score=256.86 Aligned_cols=179 Identities=19% Similarity=0.177 Sum_probs=155.4
Q ss_pred cccccccc-chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCCCC
Q 013151 223 DITFHIGK-HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIK 297 (448)
Q Consensus 223 ~~~~~~~~-~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~-~~~~~~ 297 (448)
+....++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+ .++++.|++.+ ++++.+
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~ 197 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence 33455566 68899999999999999999999999999999999999999999999998 68888888876 789999
Q ss_pred CCCCCcHHHHHHH----cCChhHHHHHHHc--------------------CCcccccC--CchhHHHHHhcCCHHHHHHH
Q 013151 298 DKFGNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCTAVARGDSDFLKRV 351 (448)
Q Consensus 298 ~~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~--~~~~l~~A~~~~~~~~v~~L 351 (448)
|..|+||||+|+. .|+.+++++|++. |++++..+ +.||||.|+. +++|
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 9999999999999 8999999999987 77777654 6799999996 8999
Q ss_pred HHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcC
Q 013151 352 LSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 409 (448)
Q Consensus 352 l~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 409 (448)
+++ ++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+++|
T Consensus 272 l~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 272 IAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 998 68999999999999999999999999999999999999999999999999765
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.9e-31 Score=228.75 Aligned_cols=162 Identities=25% Similarity=0.304 Sum_probs=121.9
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 312 (448)
++.++|+.|+..|+.++++.|++. +.+++..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 456678888888888888888877 5567777777888888888888888888888888888877777777777777766
Q ss_pred ChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcC
Q 013151 313 HDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 392 (448)
Q Consensus 313 ~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~ 392 (448)
+.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 84 ~~~~v~~Ll~~-------------------------------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 84 HRDIVQKLLQY-------------------------------KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132 (179)
T ss_dssp CHHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHc-------------------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 66666555554 55566677777888888888888888888888888888
Q ss_pred CCCCCCCChhHHHHhcCCHHHHHHHHHhcccccc
Q 013151 393 TKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 426 (448)
Q Consensus 393 ~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~ 426 (448)
.+|..|+||||+|+..++.+++++|+++|++...
T Consensus 133 ~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166 (179)
T ss_dssp BCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 8888888888888888888888888887776654
No 65
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.2e-31 Score=243.72 Aligned_cols=173 Identities=21% Similarity=0.184 Sum_probs=154.8
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CChhHHHHHHHcCCcccc------
Q 013151 267 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------ 329 (448)
Q Consensus 267 ~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~------ 329 (448)
.|+||||+|+..|+.+ ++++|+++|++++. .|..|+||||+|+.. |+.+++++|+++|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4889999999999997 66788889999998 899999999999999 999999999999887763
Q ss_pred -------cCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHH---
Q 013151 330 -------DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYD-------------HRTPLHVAASEGLYLMAKLLLE--- 386 (448)
Q Consensus 330 -------~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~TpLh~A~~~~~~~~v~~Ll~--- 386 (448)
..+.||||+|+..|+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 34889999999999999999999999999999986 9999999999999999999999
Q ss_pred CCCCcCCCCCCCCChhHHHHh--cCCHH-------HHHHHHHhccccc------cccccCCcchHHHH
Q 013151 387 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAECTQL------SEFHYCSQGMIGIA 439 (448)
Q Consensus 387 ~gad~~~~d~~g~tpl~~A~~--~~~~~-------~v~~Ll~~~~~~~------~~~~~~~~~~~~~~ 439 (448)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|++.. ...+..+.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 999999999999999999999 88888 9999999999883 33344444444443
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=2e-31 Score=228.54 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=108.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCH
Q 013151 267 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345 (448)
Q Consensus 267 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~ 345 (448)
++.+|||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-------------------------- 57 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM-------------------------- 57 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHH--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHH--------------------------
Confidence 456677777777777777777775 45666667777777776666665555555
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccc
Q 013151 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQL 425 (448)
Q Consensus 346 ~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~ 425 (448)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus 58 -----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 132 (179)
T 3f6q_A 58 -----LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132 (179)
T ss_dssp -----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS
T ss_pred -----HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 455566777888899999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccCCcchHHH
Q 013151 426 SEFHYCSQGMIGI 438 (448)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (448)
..... +.+++++
T Consensus 133 ~~~~~-g~tpl~~ 144 (179)
T 3f6q_A 133 ICNKY-GEMPVDK 144 (179)
T ss_dssp BCCTT-SCCGGGG
T ss_pred hhccC-CCCcHHH
Confidence 54433 3344433
No 67
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=4.3e-32 Score=249.12 Aligned_cols=173 Identities=20% Similarity=0.275 Sum_probs=147.0
Q ss_pred chhhhhHHHHHHHhc---CCHHHHHHHHHcCCCC-------C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013151 231 HEAELALRVNSAAYH---GDLYQLKGLIRAGADP-------N----KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 296 (448)
Q Consensus 231 ~~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~-------~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 296 (448)
.+..|.||||+|+.. |+.+++++|++.|+++ + ..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~ 129 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence 467899999999986 9999999999998652 2 2567899999999999999999999999999999
Q ss_pred CCC--------------CCCcHHHHHHHcCChhHHHHHHH---cCCcccccC--CchhHHHHHhcCC---------HHHH
Q 013151 297 KDK--------------FGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCTAVARGD---------SDFL 348 (448)
Q Consensus 297 ~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~--~~~~l~~A~~~~~---------~~~v 348 (448)
.+. .|.||||+|+..|+.+++++|++ +|++++..+ |.||||+|+..|+ .+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v 209 (273)
T 2pnn_A 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209 (273)
T ss_dssp CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHH
Confidence 987 79999999999999999999999 999998765 7799999999998 8999
Q ss_pred HHHHHCCCCCC-------CCCCCCCcHHHHHHHcCcHHHHHHHHHCCC-CcCCCCCCCCChhH
Q 013151 349 KRVLSNGVDPS-------SRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKDRWGNTPLD 403 (448)
Q Consensus 349 ~~Ll~~g~~~~-------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~ 403 (448)
++|+++|++++ .+|..|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus 210 ~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 99999999997 489999999999999999999999999999 88888777776643
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=1.1e-30 Score=218.65 Aligned_cols=153 Identities=25% Similarity=0.429 Sum_probs=129.7
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 235 LALRVNSAAYHGDLYQLKGLIRA-GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313 (448)
Q Consensus 235 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 313 (448)
+.++||.|+..|+.++++.|++. +.+++..+..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 56788888888888888888887 34788888888888888 88888888888888888888888888888888877776
Q ss_pred hhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCC
Q 013151 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393 (448)
Q Consensus 314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~ 393 (448)
.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+++ ++++.
T Consensus 81 ~~~v~~Ll~~-------------------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 81 LDTLKVLVEH-------------------------------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp HHHHHHHHHT-------------------------------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred HHHHHHHHHc-------------------------------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 6666665554 556777888899999999999999999999999 99999
Q ss_pred CCCCCCChhHHHHhcCCHHHHHHHHHh
Q 013151 394 KDRWGNTPLDEGRMCGNKNLIKLLEDA 420 (448)
Q Consensus 394 ~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 420 (448)
+|..|.||||+|+..|+.+++++|+++
T Consensus 129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 129 RDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999875
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.2e-31 Score=241.12 Aligned_cols=188 Identities=16% Similarity=0.099 Sum_probs=135.4
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 311 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 311 (448)
+..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 346899999999999999999999999999854 7789999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHcCcHHHHHHHHH
Q 013151 312 GHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVA--ASEGLYLMAKLLLE 386 (448)
Q Consensus 312 ~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-TpLh~A--~~~~~~~~v~~Ll~ 386 (448)
|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|+++|++++.++..|. ||||+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 99999999999999988765 67999999999999999999999999999998877 999999 78889999999999
Q ss_pred CCCCcCCC---------CCCCCChhHHHHhcCCHHHHHHHHHhcc
Q 013151 387 AGASVFTK---------DRWGNTPLDEGRMCGNKNLIKLLEDAEC 422 (448)
Q Consensus 387 ~gad~~~~---------d~~g~tpl~~A~~~~~~~~v~~Ll~~~~ 422 (448)
+|++++.. +..+.+|+++|...|. +++.|.+.+.
T Consensus 161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~ 203 (239)
T 1ycs_B 161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDE 203 (239)
T ss_dssp HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTT
T ss_pred hhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCC
Confidence 99888765 5668889988888875 4555554443
No 70
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=7.6e-30 Score=215.61 Aligned_cols=154 Identities=34% Similarity=0.468 Sum_probs=126.4
Q ss_pred hhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 013151 207 LLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLF 286 (448)
Q Consensus 207 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 286 (448)
+++.++.+.....+..+ .+++..+..|.||||+|+..++.++++.|+++|++++.+|.+|+||||+|+..|+.+++++
T Consensus 11 Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~ 88 (169)
T 4gpm_A 11 AAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88 (169)
T ss_dssp HHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHH
Confidence 34444444444444433 3345677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCC
Q 013151 287 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR 366 (448)
Q Consensus 287 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 366 (448)
|+++|+++|.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+|+
T Consensus 89 Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-------------------------------gad~~~~d~~G~ 137 (169)
T 4gpm_A 89 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-------------------------------GADVNTSDSDGR 137 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------------------------------TCCTTCCCTTSC
T ss_pred HHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------------------CCCccccCCCCC
Confidence 9999999999999999999999988777666666554 556777888999
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCcCC
Q 013151 367 TPLHVAASEGLYLMAKLLLEAGASVFT 393 (448)
Q Consensus 367 TpLh~A~~~~~~~~v~~Ll~~gad~~~ 393 (448)
||||+|+..|+.+++++|+++||+++.
T Consensus 138 TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 138 TPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHTC------
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 999999999999999999999998864
No 71
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.8e-30 Score=236.23 Aligned_cols=164 Identities=23% Similarity=0.286 Sum_probs=154.8
Q ss_pred ccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCCC
Q 013151 225 TFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGA-DPNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKD 298 (448)
Q Consensus 225 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~-----~~~~~~~v~~Ll~~~~~~~~~~ 298 (448)
...++..+..|.||||+|+..|+.++++.|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|.+++..+
T Consensus 101 ~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~ 180 (276)
T 4hbd_A 101 DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKAS 180 (276)
T ss_dssp HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCT
T ss_pred hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccC
Confidence 33466778899999999999999999999999998 89999999999999999 6789999999999999999999
Q ss_pred CCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHc
Q 013151 299 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASE 375 (448)
Q Consensus 299 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~A~~~ 375 (448)
..|+||||+|+..|+.+++++|+++|++++..+ |.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence 999999999999999999999999999998755 7899999999999999999999 8999999999999999999999
Q ss_pred CcHHHHHHHHHCC
Q 013151 376 GLYLMAKLLLEAG 388 (448)
Q Consensus 376 ~~~~~v~~Ll~~g 388 (448)
|+.+++++|++++
T Consensus 261 g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 261 GQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcc
Confidence 9999999999864
No 72
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=8e-31 Score=238.83 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=147.8
Q ss_pred hhhhhHHHHHHH---hcCCHHHHHHHHHcCCC-----------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 013151 232 EAELALRVNSAA---YHGDLYQLKGLIRAGAD-----------PNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 297 (448)
Q Consensus 232 ~~~~~~~L~~A~---~~g~~~~v~~Ll~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~ 297 (448)
+..|.||||+|+ ..|+.+++++|++.|++ .+..|..|+||||+|+..|+.+++++|+++|++++..
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~ 122 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ 122 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc
Confidence 367999999999 77999999999998744 3445568999999999999999999999999999999
Q ss_pred C--------------CCCCcHHHHHHHcCChhHHHHHHH---cCCcccccC--CchhHHHHHhcCC---------HHHHH
Q 013151 298 D--------------KFGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCTAVARGD---------SDFLK 349 (448)
Q Consensus 298 ~--------------~~g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~--~~~~l~~A~~~~~---------~~~v~ 349 (448)
+ ..|.||||+|+..|+.+++++|++ +|++++..+ |.||||+|+..++ .++++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~ 202 (260)
T 3jxi_A 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202 (260)
T ss_dssp CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence 8 689999999999999999999999 899998765 7899999998887 79999
Q ss_pred HHHHCCCCC-------CCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCC
Q 013151 350 RVLSNGVDP-------SSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 393 (448)
Q Consensus 350 ~Ll~~g~~~-------~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~ 393 (448)
+|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 203 ~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 999999998 67999999999999999999999999999976543
No 73
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=2.7e-30 Score=222.10 Aligned_cols=163 Identities=23% Similarity=0.314 Sum_probs=143.3
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEA 308 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A 308 (448)
.+.++|+.|+..|+.+.++.+++.+. +..+ ..|+||||+|+..|+. +++++|+++|+++|.+|..|+||||+|
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 45678999999999999999998774 4455 6799999999999975 599999999999999999999999999
Q ss_pred HHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcC-----cHHHHH
Q 013151 309 IKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHR-TPLHVAASEG-----LYLMAK 382 (448)
Q Consensus 309 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-TpLh~A~~~~-----~~~~v~ 382 (448)
+..++.++.+ ..+++++|+++|+++|.+|..|+ ||||+|+..+ +.++++
T Consensus 83 ~~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 83 FQGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp HHHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred HHcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 9988765432 24788999999999999999999 9999999844 467999
Q ss_pred HHHH-CCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 383 LLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 383 ~Ll~-~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
+|++ +|+|++.+|..|+||||+|++.|+.+++++|++...+
T Consensus 138 ~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999987643
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=4e-30 Score=231.11 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=119.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--CchhHHHHHhc
Q 013151 265 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVAR 342 (448)
Q Consensus 265 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~ 342 (448)
+..|.||||.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+ +.||||+|+..
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA 80 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 346999999999999999999999999999864 778999999999999999999999999988755 78999999999
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCC-ChhHHH--HhcCCHHHHHHHHH
Q 013151 343 GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLED 419 (448)
Q Consensus 343 ~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~-tpl~~A--~~~~~~~~v~~Ll~ 419 (448)
|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|. ||||+| +..|+.+++++|++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887 999999 88899999999999
Q ss_pred hcccccc
Q 013151 420 AECTQLS 426 (448)
Q Consensus 420 ~~~~~~~ 426 (448)
+|++...
T Consensus 161 ~~a~~~~ 167 (239)
T 1ycs_B 161 VQEKMGI 167 (239)
T ss_dssp HHHHTTT
T ss_pred hhhcccc
Confidence 9987644
No 75
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=5.5e-29 Score=203.16 Aligned_cols=133 Identities=26% Similarity=0.404 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHH
Q 013151 259 ADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCT 338 (448)
Q Consensus 259 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~ 338 (448)
++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~-------------------------- 55 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-G-------------------------- 55 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-S--------------------------
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-C--------------------------
Confidence 4556666666666666666666666666666666666666655555555555 4
Q ss_pred HHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHH
Q 013151 339 AVARGDSDFLKRVLSNGVDPSSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417 (448)
Q Consensus 339 A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~L 417 (448)
+.+++++|+++|++++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 56 -----~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 130 (136)
T 1d9s_A 56 -----SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130 (136)
T ss_dssp -----CHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHH
T ss_pred -----CHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 455555555556677778888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 013151 418 EDAECT 423 (448)
Q Consensus 418 l~~~~~ 423 (448)
+++|++
T Consensus 131 l~~Gad 136 (136)
T 1d9s_A 131 HAATGD 136 (136)
T ss_dssp HHHHCC
T ss_pred HHcCCC
Confidence 999875
No 76
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=1e-28 Score=201.58 Aligned_cols=132 Identities=24% Similarity=0.322 Sum_probs=118.6
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHH
Q 013151 227 HIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPL 305 (448)
Q Consensus 227 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~L 305 (448)
.++..+..+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 455677889999999999999999999999999999999999999999999 9999999999999999999998 89999
Q ss_pred HHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 013151 306 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLL 385 (448)
Q Consensus 306 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll 385 (448)
|+|+..|+.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll 131 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRA-------------------------------GARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131 (136)
T ss_dssp HHHHHHTCHHHHHHHHHT-------------------------------CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc-------------------------------CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999888877766666655 5566778888999999999999999999999
Q ss_pred HCCCC
Q 013151 386 EAGAS 390 (448)
Q Consensus 386 ~~gad 390 (448)
++|+|
T Consensus 132 ~~Gad 136 (136)
T 1d9s_A 132 AATGD 136 (136)
T ss_dssp HHHCC
T ss_pred HcCCC
Confidence 99886
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=4.5e-29 Score=208.78 Aligned_cols=142 Identities=22% Similarity=0.214 Sum_probs=87.4
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccC--Cch-hHHHH
Q 013151 263 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCTA 339 (448)
Q Consensus 263 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~-~l~~A 339 (448)
..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+ .|+.+++++|+++|++++..+ +.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 34455666666666666666666666666666666666666666653 566666666666666555543 344 66666
Q ss_pred HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHH
Q 013151 340 VARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 405 (448)
Q Consensus 340 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A 405 (448)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 666667777777777888888999999999999999999999999999999999999999987744
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.6e-30 Score=228.72 Aligned_cols=171 Identities=18% Similarity=0.108 Sum_probs=147.5
Q ss_pred HHHHHHcCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcc
Q 013151 251 LKGLIRAGADPNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 327 (448)
Q Consensus 251 v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 327 (448)
++.|+++|++++..+ .+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 467889998876554 55678899999999999999999999999999999999999999999999999999999999
Q ss_pred cccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHHCCCCcCCCCCCCCChh
Q 013151 328 NVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402 (448)
Q Consensus 328 ~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~TpLh~A--~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 402 (448)
+..+ |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+| +..|+.+++++|+++|++++.+|..|.||+
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l 160 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence 8765 7899999999999999999999999999997 6999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhcccc
Q 013151 403 DEGRMCGNKNLIKLLEDAECTQ 424 (448)
Q Consensus 403 ~~A~~~~~~~~v~~Ll~~~~~~ 424 (448)
+.++..+. .++|++.|++.
T Consensus 161 ~~~~~~~~---~~~ll~~ga~~ 179 (229)
T 2vge_A 161 WDYSAEFG---DELSFREGESV 179 (229)
T ss_dssp SCBCCSST---TBCCBCTTCEE
T ss_pred HHHhhccc---cccCccccccc
Confidence 96655543 36778888873
No 79
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=1.3e-26 Score=186.03 Aligned_cols=126 Identities=44% Similarity=0.665 Sum_probs=99.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHH
Q 013151 267 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSD 346 (448)
Q Consensus 267 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~ 346 (448)
+|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------------------------ 56 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------------------------ 56 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------------------------
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH------------------------
Confidence 46777777777777777777777777777777777777777776666555555554
Q ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 347 FLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 347 ~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 57 -------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 57 -------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp -------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred -------cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 4556667778888888888888888888888888888888888888899998888888888888888874
No 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=1.3e-27 Score=195.23 Aligned_cols=135 Identities=36% Similarity=0.476 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHH
Q 013151 258 GADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 337 (448)
Q Consensus 258 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~ 337 (448)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------- 64 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ--------------- 64 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH---------------
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH---------------
Confidence 4566 567788888888888888888888888888888888888888777777666666655555
Q ss_pred HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHH
Q 013151 338 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417 (448)
Q Consensus 338 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~L 417 (448)
+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..+..+++++|
T Consensus 65 ----------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 65 ----------------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp ----------------TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred ----------------cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 4556777888899999999999999999999999999999999999999999999999999988
Q ss_pred HHhcccc
Q 013151 418 EDAECTQ 424 (448)
Q Consensus 418 l~~~~~~ 424 (448)
.+.+..+
T Consensus 129 ~~~~~s~ 135 (137)
T 3c5r_A 129 EKNESSS 135 (137)
T ss_dssp -------
T ss_pred cccccCC
Confidence 8876554
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.6e-29 Score=240.60 Aligned_cols=202 Identities=14% Similarity=0.010 Sum_probs=147.2
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHH
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRAGADP---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPL 305 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L 305 (448)
+.++.||||+|+..|+.+++++|+++|+.. +..+..|.||||+|+..|+.+++++|+++|+++ +..+.+ .|||
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL 167 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF 167 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence 445679999999999999999999998732 234556889999999999999999999999752 222233 8999
Q ss_pred HHHHHcCChhHHHHHHHcCCcccc--c--CCchhHHHHH-hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 013151 306 LEAIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCTAV-ARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLM 380 (448)
Q Consensus 306 ~~A~~~~~~~~v~~Ll~~g~~~~~--~--~~~~~l~~A~-~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~ 380 (448)
|+|+..|+.+++++|+++|++++. . ++.||||+|+ ..|+.+++++|+++|+ .|.||||+|+..|+.++
T Consensus 168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYV 240 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTH
T ss_pred HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHH
Confidence 999999999999999999998654 3 3679999999 9999999999998774 38899999999999999
Q ss_pred HHHHHHCCCCcCC-------------------------------------------------------------CCCCCC
Q 013151 381 AKLLLEAGASVFT-------------------------------------------------------------KDRWGN 399 (448)
Q Consensus 381 v~~Ll~~gad~~~-------------------------------------------------------------~d~~g~ 399 (448)
+++|+++|++++. ..+.+.
T Consensus 241 v~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~ 320 (376)
T 2aja_A 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 320 (376)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred HHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCcc
Confidence 9999887654321 123456
Q ss_pred ChhHHHHhcCCHHHHHHHHHhcccccc----c-cccCCcchHHHHhh
Q 013151 400 TPLDEGRMCGNKNLIKLLEDAECTQLS----E-FHYCSQGMIGIAEN 441 (448)
Q Consensus 400 tpl~~A~~~~~~~~v~~Ll~~~~~~~~----~-~~~~~~~~~~~~~~ 441 (448)
||||+|+..|+.+++++|++.|..... . +....++..++++.
T Consensus 321 ~~L~~A~~~g~~e~v~lLl~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 321 ELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp HHHHHHHHHTCTTHHHHHTTSHHHHHSCC------------------
T ss_pred HHHHHHHHcCcHHHHHHHHcChHHHHHHHHhccccccccccccHHHH
Confidence 789999999999999999987753221 1 22244555555544
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=9e-27 Score=189.99 Aligned_cols=123 Identities=36% Similarity=0.498 Sum_probs=68.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHH
Q 013151 268 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDF 347 (448)
Q Consensus 268 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~ 347 (448)
+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------- 68 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------------------- 68 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-------------------------
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-------------------------
Confidence 4455555555555555555555555555555555555555554444443333333
Q ss_pred HHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhc
Q 013151 348 LKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAE 421 (448)
Q Consensus 348 v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~ 421 (448)
+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 69 ------~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 69 ------NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp ------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred ------cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 33344455555666666666666666666666666666666666666666666666666666666554
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1.3e-27 Score=199.85 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=117.7
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHH
Q 013151 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEA 308 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A 308 (448)
..+..+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A 85 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA 85 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 44567899999999999999999999999999999999999999995 99999999999999999999999999 99999
Q ss_pred HHcCChhHHHHHHHcCCcccccC--CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013151 309 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372 (448)
Q Consensus 309 ~~~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A 372 (448)
+..|+.+++++|+++|++++..+ +.||||+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999998765 77999999999999999999999999999999999998754
No 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=5.5e-26 Score=185.31 Aligned_cols=128 Identities=31% Similarity=0.429 Sum_probs=112.8
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013151 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 309 (448)
.....+.||||+|+..|+.++++.|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q 013151 310 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG 388 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g 388 (448)
..|+.+++++|+++ |++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~-------------------------------g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKH-------------------------------GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHc-------------------------------CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88877777666655 4566677888899999999999999999998876
No 85
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=7.3e-29 Score=235.97 Aligned_cols=176 Identities=13% Similarity=0.043 Sum_probs=153.4
Q ss_pred hhhHHHHHHHh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHH
Q 013151 234 ELALRVNSAAY-HGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAI 309 (448)
Q Consensus 234 ~~~~~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~ 309 (448)
.+.+++++|.. .++.+.+++++++|.+ ++||||+|+..|+.+++++|+++|+.. +..+..|.||||+|+
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 35678888877 5789999999998865 359999999999999999999998832 234557889999999
Q ss_pred HcCChhHHHHHHHcCCc-----ccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HcCcHHHH
Q 013151 310 KCGHDGVTSLLVKEGAS-----LNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS--RDYDHRTPLHVAA-SEGLYLMA 381 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~-----~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~TpLh~A~-~~~~~~~v 381 (448)
..|+.+++++|+++|++ ++..+ .||||+|+..|+.+++++|+++|++++. .|..|+||||+|+ ..|+.++|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 99999999999999974 44445 8999999999999999999999999887 8889999999999 99999999
Q ss_pred HHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccc
Q 013151 382 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQ 424 (448)
Q Consensus 382 ~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~ 424 (448)
++|+++|++ |.||||+|+.+|+.+++++|+++|++.
T Consensus 216 ~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 216 NFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp HHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence 999998853 889999999999999999999998764
No 86
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.4e-25 Score=190.16 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=127.6
Q ss_pred chhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 200 GRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRG 279 (448)
Q Consensus 200 ~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 279 (448)
+...+..++..++.+.....+..+ ...+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 344455555555555544444433 234456678999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCC
Q 013151 280 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPS 359 (448)
Q Consensus 280 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~ 359 (448)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++ |++++
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------------g~~~~ 140 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-------------------------------GADVN 140 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-------------------------------TCCTT
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------------------CCCCC
Confidence 99999999999999999999999999999888777776666655 55667
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q 013151 360 SRDYDHRTPLHVAASEGLYLMAKLLLEAG 388 (448)
Q Consensus 360 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g 388 (448)
.+|..|.||||+|+..|+.+++++|++.|
T Consensus 141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 77888899999999999999999998876
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.94 E-value=8.2e-28 Score=206.75 Aligned_cols=140 Identities=24% Similarity=0.265 Sum_probs=98.7
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHH
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIK 310 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~ 310 (448)
+..|.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4466667777777777777777766 66666666667777777777777777777777666666665 556666666665
Q ss_pred cCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.|+.+++ ++|+++|++++.+|..|+||||+|+..++.
T Consensus 120 ~~~~~~v-------------------------------~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------ 156 (183)
T 3deo_A 120 YVRPEVV-------------------------------EALVELGADIEVEDERGLTALELAREILKT------------ 156 (183)
T ss_dssp TTCHHHH-------------------------------HHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------
T ss_pred cCcHHHH-------------------------------HHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------
Confidence 5555554 455555667778888899999999875432
Q ss_pred cCCCCCCCCChhHHHHhcCCHHHHHHHHHh
Q 013151 391 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 420 (448)
Q Consensus 391 ~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ 420 (448)
..+.+||++|+..|+.+++++|.++
T Consensus 157 -----~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 -----TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp -----CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred -----cccccHHHHHHHcCHHHHHHHHHHh
Confidence 4567899999999999999998764
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=1.2e-25 Score=180.46 Aligned_cols=126 Identities=44% Similarity=0.628 Sum_probs=113.6
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 313 (448)
+|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred hhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 314 DGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 314 ~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.+++++|+++ |++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7766666655 455667788899999999999999999999999886
No 89
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=8.6e-26 Score=190.62 Aligned_cols=156 Identities=26% Similarity=0.328 Sum_probs=123.0
Q ss_pred hhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 201 RKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGY 280 (448)
Q Consensus 201 ~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 280 (448)
.+.+..++..++.+.....+.. ........+..+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 87 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 87 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred hHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence 3344444444444444333322 234445566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCC
Q 013151 281 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSS 360 (448)
Q Consensus 281 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~ 360 (448)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ |++++.
T Consensus 88 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------------------ga~~~~ 136 (165)
T 3twr_A 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-------------------------------GADPTK 136 (165)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-------------------------------TCCTTC
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-------------------------------CCCCcc
Confidence 9999999999999999999999999999888777766666655 455667
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHCCC
Q 013151 361 RDYDHRTPLHVAASEGLYLMAKLLLEAGA 389 (448)
Q Consensus 361 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga 389 (448)
+|..|+||||+|+. |+.+++++|+++|+
T Consensus 137 ~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 137 KNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 77888888888766 78888888888775
No 90
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=3.2e-25 Score=185.20 Aligned_cols=151 Identities=26% Similarity=0.339 Sum_probs=125.8
Q ss_pred hhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 013151 203 VLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYED 282 (448)
Q Consensus 203 il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 282 (448)
.+..++..++.+.....+.. .....+..+..|.||||+ +..|+.++++.|+++|++++.+|..|.||||+|+..|+.+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 82 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD 82 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 34444444554444444433 333455667789999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCC
Q 013151 283 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRD 362 (448)
Q Consensus 283 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d 362 (448)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------------------~~~~~~~ 130 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--------------------------------SDLHRRD 130 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--------------------------------SCTTCCC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--------------------------------cCCCCcC
Confidence 99999999999999999999999999998888877777765 3566778
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHC
Q 013151 363 YDHRTPLHVAASEGLYLMAKLLLEA 387 (448)
Q Consensus 363 ~~g~TpLh~A~~~~~~~~v~~Ll~~ 387 (448)
..|.||||+|+..|+.+++++|+++
T Consensus 131 ~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 131 ARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 8899999999999999999998864
No 91
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.5e-25 Score=185.25 Aligned_cols=139 Identities=27% Similarity=0.332 Sum_probs=104.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHH
Q 013151 269 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFL 348 (448)
Q Consensus 269 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v 348 (448)
.||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..| +.+++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~-------------------------------~~~~v 50 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG-------------------------------HFSTT 50 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHT-------------------------------CHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcC-------------------------------CHHHH
Confidence 355566666666666666665555544 3445555555555554 45555
Q ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccccc
Q 013151 349 KRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSEF 428 (448)
Q Consensus 349 ~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~~ 428 (448)
++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.....
T Consensus 51 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 130 (153)
T 1awc_B 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130 (153)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 55555666778888999999999999999999999999999999999999999999999999999999999999876554
Q ss_pred ccCCcchHHHHh
Q 013151 429 HYCSQGMIGIAE 440 (448)
Q Consensus 429 ~~~~~~~~~~~~ 440 (448)
. .+.+++++|-
T Consensus 131 ~-~g~t~l~~A~ 141 (153)
T 1awc_B 131 K-FCKTAFDISI 141 (153)
T ss_dssp T-TSCCHHHHHH
T ss_pred C-CCCCHHHHHH
Confidence 4 3445555543
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=1.1e-25 Score=202.63 Aligned_cols=144 Identities=25% Similarity=0.258 Sum_probs=115.4
Q ss_pred chhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 013151 231 HEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAI 309 (448)
Q Consensus 231 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~ 309 (448)
.+..|.||||+|+..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 34578889999999999999999888 88888888889999999999999999999999888888887 67888888877
Q ss_pred HcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC
Q 013151 310 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga 389 (448)
..|+.+++++|++ +|++++.+|..|+||||+|+..++
T Consensus 120 ~~g~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~t~l~~A~~~~~------------ 156 (244)
T 3ui2_A 120 GYVRPEVVEALVE-------------------------------LGADIEVEDERGLTALELAREILK------------ 156 (244)
T ss_dssp HTTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHHHT------------
T ss_pred HcCCHHHHHHHHH-------------------------------CCCCCCCCCCCCCcHHHHHHHHHh------------
Confidence 7776666665555 455667788888899988886322
Q ss_pred CcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 390 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 390 d~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
+..+.||||+|+..|+.+++++|++++.+
T Consensus 157 -----~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 -----TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp -----TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred -----ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 25678899999999999999998886543
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=206.12 Aligned_cols=139 Identities=18% Similarity=0.085 Sum_probs=107.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CChhHHHHHHHcCCcccccC--Cchh
Q 013151 267 DGRSPLHLATSRGYEDITLFLIQKGVDINI------KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSF 335 (448)
Q Consensus 267 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~--~~~~ 335 (448)
.+.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++..+ |.||
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345678888888888888888888877776 577778888888876 67778888888877776644 6677
Q ss_pred HHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCH
Q 013151 336 LCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 411 (448)
Q Consensus 336 l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~ 411 (448)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+.+|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 8888888888888888888899999999999999999999999999999999876 578999999998874
No 94
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=8.7e-26 Score=193.92 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=120.2
Q ss_pred hhhhHHHHHHHhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 013151 233 AELALRVNSAAYHGDL----YQLKGLIRAGADPNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN 302 (448)
Q Consensus 233 ~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~g~ 302 (448)
..|.||||+|+..|+. +++++|+++|+++|.+|..|+||||+|+..++ .+++++|+++|+++|.+|..|+
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 6799999999999985 59999999999999999999999999999986 6889999999999999999999
Q ss_pred -cHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 013151 303 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLS-NGVDPSSRDYDHRTPLHVAASEGLYLM 380 (448)
Q Consensus 303 -t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~TpLh~A~~~~~~~~ 380 (448)
||||+|+..+..+ .++.+++++|++ +|++++.+|..|+||||+|+..|+.++
T Consensus 116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 9999998754321 123467888888 899999999999999999999999999
Q ss_pred HHHHHHCCCCcCCCC
Q 013151 381 AKLLLEAGASVFTKD 395 (448)
Q Consensus 381 v~~Ll~~gad~~~~d 395 (448)
|++|.++..+.+.++
T Consensus 170 v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 170 LKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999998766665554
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=4.3e-25 Score=176.61 Aligned_cols=116 Identities=29% Similarity=0.282 Sum_probs=83.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCH
Q 013151 266 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDS 345 (448)
Q Consensus 266 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~ 345 (448)
..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll------------------------ 60 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL------------------------ 60 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH------------------------
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH------------------------
Confidence 45667777777777777777777777777776666666666666665555555444
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHH
Q 013151 346 DFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 412 (448)
Q Consensus 346 ~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~ 412 (448)
++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+|+|...+..+
T Consensus 61 -------~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 61 -------LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp -------TTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred -------HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 445566777888888999998888889999999888888888888999998885444333
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=4.4e-25 Score=198.66 Aligned_cols=143 Identities=18% Similarity=0.141 Sum_probs=122.7
Q ss_pred hhcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 013151 197 FCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLA 275 (448)
Q Consensus 197 p~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 275 (448)
...+.+.++.++..++.......+. ....+..+..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 3567888999998888877766665 34566678889999999999999999999999999999998 8899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCC
Q 013151 276 TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNG 355 (448)
Q Consensus 276 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g 355 (448)
+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------------------------------ 156 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------------------------------ 156 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------------------------------
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------------------------------
Confidence 99999999999999999999999999999999986321
Q ss_pred CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 356 VDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 356 ~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
...+.||||+|+..|+.+++++|++++.+
T Consensus 157 ------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 ------TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 13467888888888888888888876443
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=9.6e-25 Score=187.51 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=101.2
Q ss_pred hhcchhhhhHhhhccchhHHhhhhccccccccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 013151 197 FCDGRKVLTNLLEGKESNLRLKQLKSDITFHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTD-YDGRSPLHLA 275 (448)
Q Consensus 197 p~~~~~il~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 275 (448)
...+.+.++.++..++.......+. ....+..+..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 4567788888888888777766665 44566678899999999999999999999999999999998 8899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 013151 276 TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 312 (448)
Q Consensus 276 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 312 (448)
+..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence 9999999999999999999999999999999999754
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=7.4e-25 Score=194.39 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=84.2
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHH
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~ 310 (448)
+..|.||||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 45567777777777777777777777777777777777777777777777777777776 77777777777777777666
Q ss_pred cCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q 013151 311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 390 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad 390 (448)
.|+.+++++|+++ |++++.+|..|+||||+|+..|+.++++.|++.|++
T Consensus 150 ~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 150 KGYADIVQLLLAK-------------------------------GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HTCHHHHHHHHHH-------------------------------TCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred cCCHHHHHHHHHc-------------------------------CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 6655555555444 445556666777777777777777777777777776
Q ss_pred cCCCCCCC
Q 013151 391 VFTKDRWG 398 (448)
Q Consensus 391 ~~~~d~~g 398 (448)
.+.+|..|
T Consensus 199 ~~~~~~~~ 206 (222)
T 3ehr_A 199 RTLSNAED 206 (222)
T ss_dssp --------
T ss_pred hhccchhh
Confidence 66655443
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=6.7e-24 Score=194.36 Aligned_cols=191 Identities=16% Similarity=0.065 Sum_probs=142.0
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHH
Q 013151 233 AELALRVNSAAYHGDLYQLKGLIRAGADPNK-TDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 233 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~ 310 (448)
..+.++++.+...|+....+.+...-..... +...+.... .....-..+++...- ...+..+....++|+.|+.
T Consensus 64 ~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~ 139 (278)
T 1dcq_A 64 VLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK 139 (278)
T ss_dssp CCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence 3455677888888887766555332221111 111111221 111111222333221 1122222234578999999
Q ss_pred cCChhHHHHHHHcCCcccc--------cCCchhHHHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 013151 311 CGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~ 379 (448)
.|+.+.++.+++.|++++. ..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~ 219 (278)
T 1dcq_A 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219 (278)
T ss_dssp TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999988652 3478999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccccccc
Q 013151 380 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLSE 427 (448)
Q Consensus 380 ~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~~ 427 (448)
++++|+++|+|++.+|..|+||||+|+..|+.+++++|+++|++....
T Consensus 220 ~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 267 (278)
T 1dcq_A 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267 (278)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999999999999999999999999976544
No 100
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=9.6e-25 Score=178.14 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=109.8
Q ss_pred cchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 013151 230 KHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 309 (448)
Q Consensus 230 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~ 309 (448)
..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC
Q 013151 310 KCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 389 (448)
Q Consensus 310 ~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga 389 (448)
..|+.+++++|+++ |++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus 85 ~~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 85 KNGHVDIVKLLLSY-------------------------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HTTCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HcCCHHHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 88777766666655 55666777888888888888888888877776553
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=4.8e-24 Score=170.51 Aligned_cols=117 Identities=33% Similarity=0.443 Sum_probs=100.1
Q ss_pred hhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 013151 232 EAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 311 (448)
Q Consensus 232 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 311 (448)
+..+.+|||+|+..|+.++++.|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 013151 312 GHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYL 379 (448)
Q Consensus 312 ~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~ 379 (448)
|+.+++++|+++ |++++.+|..|+||||+|+..+..+
T Consensus 84 ~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 84 GHVSCVKLLLSK-------------------------------GADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp TCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 877777766665 4556677778888888885443333
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2e-24 Score=191.62 Aligned_cols=134 Identities=23% Similarity=0.251 Sum_probs=111.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcC
Q 013151 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG 343 (448)
Q Consensus 264 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~ 343 (448)
.+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------------- 128 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ-------------------- 128 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS--------------------
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC--------------------
Confidence 367789999999999999999999999999999999999999999988877777776654
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 344 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 344 ~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.++.
T Consensus 129 ----------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 129 ----------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp ----------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred ----------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 1567788899999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 013151 424 QLSE 427 (448)
Q Consensus 424 ~~~~ 427 (448)
....
T Consensus 199 ~~~~ 202 (222)
T 3ehr_A 199 RTLS 202 (222)
T ss_dssp ----
T ss_pred hhcc
Confidence 7544
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=191.60 Aligned_cols=126 Identities=25% Similarity=0.146 Sum_probs=118.4
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHcCCcccc--------cCCchhHHHHHhc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 013151 298 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCTAVAR---GDSDFLKRVLSNGVDPSSRDYDHR 366 (448)
Q Consensus 298 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------~~~~~~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~ 366 (448)
.....++|+.|+..|+.+.++.|++.|++++. ..+.||||+|+.. |+.+++++|+++|+++|.+|..|+
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34456899999999999999999999999875 3477999999997 899999999999999999999999
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhccc
Q 013151 367 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECT 423 (448)
Q Consensus 367 TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~ 423 (448)
||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999987
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=3.9e-23 Score=156.36 Aligned_cols=93 Identities=39% Similarity=0.535 Sum_probs=86.2
Q ss_pred CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCC
Q 013151 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410 (448)
Q Consensus 331 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~ 410 (448)
+|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36788888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 013151 411 KNLIKLLEDAECT 423 (448)
Q Consensus 411 ~~~v~~Ll~~~~~ 423 (448)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999974
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=6e-23 Score=188.04 Aligned_cols=128 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCc
Q 013151 233 AELALRVNSAAYHGDLYQLKGLIRAGADP------NKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNT 303 (448)
Q Consensus 233 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t 303 (448)
....++|+.|+..|+.+.++.+++.|+++ +..+..|+||||+|+.. |+.+++++|+++|+++|.+|..|+|
T Consensus 128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~T 207 (278)
T 1dcq_A 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCC
Confidence 34455666666666666666666666653 23355566666666666 5666666666666666666666666
Q ss_pred HHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 013151 304 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKL 383 (448)
Q Consensus 304 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~ 383 (448)
|||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 208 pLh~A~~~g~-------------------------------~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 256 (278)
T 1dcq_A 208 ALHYCCLTDN-------------------------------AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256 (278)
T ss_dssp HHHHHHHTTC-------------------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCC-------------------------------HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHH
Confidence 6666655555 455555555667778889999999999999999999999
Q ss_pred HHHCCCCc
Q 013151 384 LLEAGASV 391 (448)
Q Consensus 384 Ll~~gad~ 391 (448)
|+++|++.
T Consensus 257 Ll~~ga~~ 264 (278)
T 1dcq_A 257 LTQALSGR 264 (278)
T ss_dssp HHHHHTTC
T ss_pred HHHcCCCC
Confidence 99998753
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=6.1e-23 Score=203.91 Aligned_cols=125 Identities=19% Similarity=0.135 Sum_probs=86.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHH---cCChhHHHHHHHcCCcccccC--CchhHHH
Q 013151 270 SPLHLATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIK---CGHDGVTSLLVKEGASLNVDD--AGSFLCT 338 (448)
Q Consensus 270 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~--~~~~l~~ 338 (448)
+.||.|+..|+.++++.|+++|+++|.. +..|.||||+|+. .|+.+++++|+++|++++..+ |.||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 5666666666666666666666666655 5566666666654 566666666666666666543 5566666
Q ss_pred HHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCC
Q 013151 339 AVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 394 (448)
Q Consensus 339 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~ 394 (448)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 66677777777777778888888888899999999999999999999999888764
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.89 E-value=1.1e-22 Score=192.67 Aligned_cols=145 Identities=30% Similarity=0.319 Sum_probs=97.0
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 013151 234 ELALRVNSAAYH-GDLYQLKGLIRAGADPNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 310 (448)
Q Consensus 234 ~~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 310 (448)
.+.++||.|+.. |+.++++.|+++|+++|..+ ..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456778888887 88888888888888887777 678888888888888888888888888888888778787777777
Q ss_pred cCChhHHHHHHHcCCcccccCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC--
Q 013151 311 CGHDGVTSLLVKEGASLNVDDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAG-- 388 (448)
Q Consensus 311 ~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g-- 388 (448)
.|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 278 ~g~~~~v~~LL~-------------------------------~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 278 LGHTGLACLFLK-------------------------------RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred cCcHHHHHHHHH-------------------------------CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 766655555554 45566778888888999998888888888888765
Q ss_pred -CCcCCCCCCCCChhHHHHhcC
Q 013151 389 -ASVFTKDRWGNTPLDEGRMCG 409 (448)
Q Consensus 389 -ad~~~~d~~g~tpl~~A~~~~ 409 (448)
++....+..+.|+++++....
T Consensus 327 ~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 327 EAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ----------------------
T ss_pred cccccccCCCCCCHHHHHHHHH
Confidence 344455667788888776554
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.3e-22 Score=192.26 Aligned_cols=145 Identities=22% Similarity=0.204 Sum_probs=114.8
Q ss_pred CCCCCcHHHHHHHc-CChhHHHHHHHcCCcccccC----CchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 013151 298 DKFGNTPLLEAIKC-GHDGVTSLLVKEGASLNVDD----AGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVA 372 (448)
Q Consensus 298 ~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~----~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A 372 (448)
+..+.||||.|+.. |+.++++.|+++|++++..+ +.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34566889999988 88999999999988888654 66899999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccc--ccccCCcchHHHHhhh
Q 013151 373 ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS--EFHYCSQGMIGIAENL 442 (448)
Q Consensus 373 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~~~~~~~~l 442 (448)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++..... .......+++++++.+
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865443 2233445555655544
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=3.2e-22 Score=198.78 Aligned_cols=126 Identities=25% Similarity=0.181 Sum_probs=116.8
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCccccc--------CCchhHHHHHh---cCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 013151 301 GNTPLLEAIKCGHDGVTSLLVKEGASLNVD--------DAGSFLCTAVA---RGDSDFLKRVLSNGVDPSSRDYDHRTPL 369 (448)
Q Consensus 301 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--------~~~~~l~~A~~---~~~~~~v~~Ll~~g~~~~~~d~~g~TpL 369 (448)
..+.||.|+..|+.+.++.|++.|++++.. .|.||||+|+. .|+.+++++|+++|+++|.+|..|+|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 347899999999999999999999999854 58899999965 9999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHHHHhcccccc
Q 013151 370 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAECTQLS 426 (448)
Q Consensus 370 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~~~~~~~ 426 (448)
|+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998765
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=5.3e-22 Score=150.10 Aligned_cols=93 Identities=42% Similarity=0.583 Sum_probs=86.1
Q ss_pred hhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 013151 234 ELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 313 (448)
Q Consensus 234 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 313 (448)
+|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCc
Q 013151 314 DGVTSLLVKEGAS 326 (448)
Q Consensus 314 ~~~v~~Ll~~g~~ 326 (448)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999998874
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=9.5e-22 Score=155.04 Aligned_cols=108 Identities=36% Similarity=0.477 Sum_probs=75.3
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCcccccCCchhHHHHHhcC
Q 013151 264 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCTAVARG 343 (448)
Q Consensus 264 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~l~~A~~~~ 343 (448)
+|.+|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~---------------------------- 56 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE---------------------------- 56 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHH----------------------------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH----------------------------
Confidence 4556666666666666666666666666666666666666666655555444
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChh
Q 013151 344 DSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 402 (448)
Q Consensus 344 ~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl 402 (448)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus 57 ---~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 57 ---IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp ---HHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred ---HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 44444455666777888888999999988889999999988999888888888873
No 112
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.84 E-value=3.3e-20 Score=161.14 Aligned_cols=144 Identities=18% Similarity=0.364 Sum_probs=135.3
Q ss_pred HHhhccCCHHHHHHHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeec
Q 013151 62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141 (448)
Q Consensus 62 ~d~~~~~p~~~~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~ 141 (448)
-.++..+|..+..++..+.+.++++++|+|++++++++..++..++...|+||++|+++|++++.+|||.+|.|+++.
T Consensus 50 ~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-- 127 (198)
T 2ptm_A 50 RHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-- 127 (198)
T ss_dssp HHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 142 ~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+|+ ++..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....+...+..
T Consensus 128 ~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 128 SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 5555 78999999999999999999999999999999999999999999999999998877766554
No 113
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=1e-20 Score=149.09 Aligned_cols=103 Identities=33% Similarity=0.461 Sum_probs=90.6
Q ss_pred cCCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcC
Q 013151 330 DDAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG 409 (448)
Q Consensus 330 ~~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 409 (448)
.++.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence 44666777777777777777777788888999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccccccccCC
Q 013151 410 NKNLIKLLEDAECTQLSEFHYCS 432 (448)
Q Consensus 410 ~~~~v~~Ll~~~~~~~~~~~~~~ 432 (448)
+.+++++|+++|++.........
T Consensus 87 ~~~~~~~Ll~~ga~~n~~~~~~~ 109 (115)
T 2l6b_A 87 HHEIVKLLDAKGADVNARSWGSS 109 (115)
T ss_dssp CHHHHHHHHTTSSSHHHHSCCCC
T ss_pred CHHHHHHHHHcCCCCCcCCcccc
Confidence 99999999999998776655443
No 114
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.82 E-value=1.4e-19 Score=157.70 Aligned_cols=144 Identities=24% Similarity=0.385 Sum_probs=132.7
Q ss_pred HHHhhccCCHHHHHHHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEee
Q 013151 61 IIDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGV 140 (448)
Q Consensus 61 ~~d~~~~~p~~~~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~ 140 (448)
.-.++..+|..+..++..+.+.++++++|+|++++++++..++..++...|+||++|+++|++++.+|||.+|.|+++.
T Consensus 50 e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~- 128 (202)
T 3bpz_A 50 EDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT- 128 (202)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 141 GEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 141 ~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+|++. .+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....+...+..
T Consensus 129 -~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 129 -KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp -TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred -CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 566653 58999999999999999999999999999999999999999999999988777665543
No 115
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.81 E-value=2.4e-19 Score=157.45 Aligned_cols=141 Identities=21% Similarity=0.394 Sum_probs=132.7
Q ss_pred HhhccCCHHHHHHHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecC
Q 013151 63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE 142 (448)
Q Consensus 63 d~~~~~p~~~~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~ 142 (448)
.++..+|..+..++..+++..++ ++|+|++++++++..++..++...|+||++|+++||+++.+|||.+|.|+++.
T Consensus 56 ~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--- 131 (212)
T 3ukn_A 56 ELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--- 131 (212)
T ss_dssp CTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---
T ss_pred HHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---
Confidence 48999999999999999998887 79999999999999999999999999999999999999999999999999986
Q ss_pred CCCeeEEEEecCCCeeecccccCCC--CcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 143 DGSEETVSQLQPNSSFGEVSILCNI--PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 143 ~g~~~~~~~l~~G~~fGe~~ll~~~--~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+| .++..+.+|++||+.+++.+. ++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 132 ~~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 198 (212)
T 3ukn_A 132 DN--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQH 198 (212)
T ss_dssp SS--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CC--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 33 679999999999999999988 999999999999999999999999999999999988887754
No 116
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=3.3e-19 Score=149.22 Aligned_cols=140 Identities=24% Similarity=0.326 Sum_probs=125.2
Q ss_pred HhhccCCHHHHHHHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecC
Q 013151 63 DLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE 142 (448)
Q Consensus 63 d~~~~~p~~~~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~ 142 (448)
+++..+|..+..++..+.+.++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++.
T Consensus 7 ~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--- 83 (160)
T 4f8a_A 7 KVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ--- 83 (160)
T ss_dssp --------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE---
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE---
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeeEEEEecCCCeeecccccCC--CCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHh
Q 013151 143 DGSEETVSQLQPNSSFGEVSILCN--IPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL 207 (448)
Q Consensus 143 ~g~~~~~~~l~~G~~fGe~~ll~~--~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~l 207 (448)
++.++..+.+|++||+.+++.+ .++.++++|.++|+++.++++.+..++..+|.....++..+
T Consensus 84 --~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 --DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999988 68999999999999999999999999999999988877765
No 117
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.81 E-value=1.6e-19 Score=147.91 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=114.2
Q ss_pred HHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeE---EEEecCCCee
Q 013151 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEET---VSQLQPNSSF 158 (448)
Q Consensus 82 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~---~~~l~~G~~f 158 (448)
.++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.+ +..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4678999999999999999999999999999999999999999999999999999999889999888 9999999999
Q ss_pred ecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 159 Ge~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
|+.+++.+.++.++++|.++|+++.++++.+..++..+|.....++..+.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887777654
No 118
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.80 E-value=5.1e-19 Score=148.23 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=120.5
Q ss_pred HHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCC
Q 013151 76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN 155 (448)
Q Consensus 76 i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G 155 (448)
..+..+..+++++|+|++++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++. ..+|++.++..+.+|
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESC
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCC
Confidence 3455677899999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred CeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhh
Q 013151 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLT 205 (448)
Q Consensus 156 ~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~ 205 (448)
++||+.+++.+.++.++++|.++|.++.++++.|..++..+|...+.++.
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998776554
No 119
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.80 E-value=2.3e-19 Score=140.01 Aligned_cols=87 Identities=39% Similarity=0.612 Sum_probs=80.9
Q ss_pred CCchhHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCC
Q 013151 331 DAGSFLCTAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 410 (448)
Q Consensus 331 ~~~~~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~ 410 (448)
++.++||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 46678888888888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 013151 411 KNLIKLL 417 (448)
Q Consensus 411 ~~~v~~L 417 (448)
.+++++|
T Consensus 103 ~~~~~~L 109 (110)
T 2zgd_A 103 EDLAEIL 109 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 120
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.79 E-value=8.8e-19 Score=144.65 Aligned_cols=128 Identities=19% Similarity=0.272 Sum_probs=121.3
Q ss_pred HHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 82 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
.++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.++..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 56789999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 162 ~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+++.+.++.++++|.++|+++.++++.+..++..+|.....++..+..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988877766654
No 121
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=1e-18 Score=150.20 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=129.3
Q ss_pred HHhhccCCHHHHHHHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeec
Q 013151 62 IDLLSCLPWDVIYKISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG 141 (448)
Q Consensus 62 ~d~~~~~p~~~~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~ 141 (448)
.|++..-+.+. .......+++++|+|++++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+
T Consensus 22 ~dli~~~~~~~----~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~ 97 (187)
T 3gyd_A 22 PDLVHLGGADK----YFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI 97 (187)
T ss_dssp GGCEEEEEGGG----GHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEE
T ss_pred hHHhccCccHH----HHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC
Confidence 35555555433 34556788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhh
Q 013151 142 EDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208 (448)
Q Consensus 142 ~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll 208 (448)
++|++.++..+.+|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+.
T Consensus 98 ~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 164 (187)
T 3gyd_A 98 PNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164 (187)
T ss_dssp TTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888775443
No 122
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=1.1e-18 Score=136.13 Aligned_cols=95 Identities=28% Similarity=0.466 Sum_probs=85.7
Q ss_pred cccccchhhhhHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 013151 226 FHIGKHEAELALRVNSAAYHGDLYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 305 (448)
Q Consensus 226 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L 305 (448)
......+.++.++||+|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHH
Q 013151 306 LEAIKCGHDGVTSLL 320 (448)
Q Consensus 306 ~~A~~~~~~~~v~~L 320 (448)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999999999999886
No 123
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.77 E-value=2.3e-18 Score=143.07 Aligned_cols=130 Identities=15% Similarity=0.240 Sum_probs=117.4
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++++++|+|..++++++..++..++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.++..+.+|++||
T Consensus 9 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G 88 (154)
T 2z69_A 9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA 88 (154)
T ss_dssp HHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEES
T ss_pred hHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeec
Confidence 34567999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cccccCCCC-cceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 160 EVSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 160 e~~ll~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+.+++.+.+ +.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 89 ~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999988 99999999999999999999999999999988888776654
No 124
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.76 E-value=4e-18 Score=147.48 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=121.0
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
++..+++.+|.|.+++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++..+.+|++||
T Consensus 4 m~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~g 83 (194)
T 3dn7_A 4 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLS 83 (194)
T ss_dssp CCHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 160 EV-SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 160 e~-~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+. +++.+.++.++++|.++|+++.++++.+..++..+|.........+..
T Consensus 84 e~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 84 DYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp CHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred ehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 88 578889999999999999999999999999999999988776665543
No 125
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.75 E-value=9.7e-18 Score=149.31 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=120.3
Q ss_pred HHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 82 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
.++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 162 ~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887776655
No 126
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.75 E-value=8.2e-18 Score=148.11 Aligned_cols=125 Identities=21% Similarity=0.330 Sum_probs=116.9
Q ss_pred hhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeeccccc
Q 013151 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL 164 (448)
Q Consensus 85 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll 164 (448)
++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 165 ~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877766654
No 127
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.74 E-value=1.9e-17 Score=134.96 Aligned_cols=123 Identities=24% Similarity=0.262 Sum_probs=108.7
Q ss_pred HHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecC
Q 013151 75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 154 (448)
Q Consensus 75 ~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~ 154 (448)
+.....+..+++++|+|++++++++..++..++.+.|++|++|+++|++++.+|+|.+|.|++.+ +| .++..+.+
T Consensus 15 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g--~~~~~~~~ 89 (139)
T 3ocp_A 15 PQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGP 89 (139)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--EEEEEECT
T ss_pred HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--EEEEEeCC
Confidence 44566778899999999999999999999999999999999999999999999999999999965 44 47899999
Q ss_pred CCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchh
Q 013151 155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK 202 (448)
Q Consensus 155 G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~ 202 (448)
|++||+.+++.+.++.++++|.++|+++.++++.|..++..+|...++
T Consensus 90 G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 90 GKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp TCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred CCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 999999999999999999999999999999999999999999877654
No 128
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.74 E-value=1.1e-17 Score=149.64 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=123.8
Q ss_pred HhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 79 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
....++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 159 Ge~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
|+.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877776654
No 129
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.73 E-value=2.4e-17 Score=145.56 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=119.1
Q ss_pred HHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe--eec
Q 013151 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS--FGE 160 (448)
Q Consensus 83 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~--fGe 160 (448)
++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999 799
Q ss_pred ccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 161 ~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877666554
No 130
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.73 E-value=2.5e-17 Score=146.65 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=122.2
Q ss_pred HhhHHHhhccccccCCCHHHHHHHHhh--cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCC
Q 013151 79 TLYMPYIEKVSLFKGCSSEFINQIVIR--VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS 156 (448)
Q Consensus 79 ~~~~~~l~~~~~f~~l~~~~~~~l~~~--~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~ 156 (448)
.....+++++|+|.+++++++..+... ++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|+
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~ 93 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY 93 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence 345567899999999999999999998 999999999999999999999999999999999989999999999999999
Q ss_pred eeecccccCCCC-cceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 157 SFGEVSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 157 ~fGe~~ll~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
+||+.+++.+.+ +.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 94 ~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred eeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999988 89999999999999999999999999999888877776654
No 131
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.73 E-value=7.3e-18 Score=149.69 Aligned_cols=129 Identities=19% Similarity=0.309 Sum_probs=121.4
Q ss_pred hHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 81 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..++++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++..+.+|++||+
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~ 83 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGE 83 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEee
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 161 ~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 84 ~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 84 LSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp HHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777766554
No 132
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.72 E-value=7.8e-18 Score=136.90 Aligned_cols=118 Identities=17% Similarity=0.278 Sum_probs=108.0
Q ss_pred HHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEE--EecCCCeeec
Q 013151 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVS--QLQPNSSFGE 160 (448)
Q Consensus 83 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~--~l~~G~~fGe 160 (448)
++++++|+|+.++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++ ...+|++.++. .+.+|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 46889999999999999999999999999999999999999999999999999965 57788887777 9999999999
Q ss_pred ccc---cCCCC------cceEEEEeeeeeEEEechhhHHHHHHHHhhcch
Q 013151 161 VSI---LCNIP------QPYTVCICELSRLLRIDKQSFTNILEIYFCDGR 201 (448)
Q Consensus 161 ~~l---l~~~~------~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~ 201 (448)
.++ +.+.+ +.++++|.++|+++.++++.|..++..+|....
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 985 77764 579999999999999999999999999987654
No 133
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.71 E-value=8.6e-17 Score=133.50 Aligned_cols=120 Identities=24% Similarity=0.328 Sum_probs=110.0
Q ss_pred HHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 78 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
+.....+++++|+|++++++++..+...++...|++|++|+++|++++.+|||.+|.|+++. +|+ .+..+.+|++
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~ 107 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCE
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCE
Confidence 45567789999999999999999999999999999999999999999999999999999997 333 6889999999
Q ss_pred eecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchh
Q 013151 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK 202 (448)
Q Consensus 158 fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~ 202 (448)
||+.+++.+.++.++++|.++|.++.++++.|..++..++...+.
T Consensus 108 fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 108 FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp ECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred eeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 999999999999999999999999999999999999998876554
No 134
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.71 E-value=7.3e-17 Score=143.46 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=108.9
Q ss_pred HHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 82 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...++..++|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CcceEEEEeeeeeEEEechhhHHHHHHHH-----hhcchhhhhHhhh
Q 013151 162 SILCNI-PQPYTVCICELSRLLRIDKQSFTNILEIY-----FCDGRKVLTNLLE 209 (448)
Q Consensus 162 ~ll~~~-~~~~~~~a~~~~~l~~l~~~~~~~ll~~~-----p~~~~~il~~ll~ 209 (448)
+++.+. ++.++++|.++|+++.++.+.|..++..+ |.....++..+..
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 988875 78999999999999999999999999999 8877776666554
No 135
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.71 E-value=1.3e-17 Score=148.08 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=121.7
Q ss_pred hHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 81 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 45789999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred ccccCCCC-cceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 161 VSILCNIP-QPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 161 ~~ll~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+++.+.+ +.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999888777666654
No 136
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.71 E-value=4.5e-17 Score=132.52 Aligned_cols=124 Identities=21% Similarity=0.292 Sum_probs=113.6
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++++++|+|++++++++..+...++.+.|++|++|+++|++++.+|||.+|.++++..+ ...+.+|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G 80 (138)
T 1vp6_A 8 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFG 80 (138)
T ss_dssp HHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEEC
T ss_pred HHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEee
Confidence 34577999999999999999999999999999999999999999999999999999998643 24789999999
Q ss_pred cccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhhc
Q 013151 160 EVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG 210 (448)
Q Consensus 160 e~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~~ 210 (448)
+.+++.+.++.++++|.++|+++.++++.+..++..+|.....++..+.++
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r 131 (138)
T 1vp6_A 81 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 131 (138)
T ss_dssp HHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988887776653
No 137
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.70 E-value=8.3e-17 Score=151.50 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=120.6
Q ss_pred hHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 81 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..++++++|+|++++++++..+...++.+.|++|++|+++||+++.+|||.+|.|++++.+.+|++ ++..+.+|++||+
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE 89 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence 457899999999999999999999999999999999999999999999999999999998899887 8999999999999
Q ss_pred ccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhhc
Q 013151 161 VSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG 210 (448)
Q Consensus 161 ~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~~ 210 (448)
.+++.+.++.++++|.++|+++.++++.|..++ .+|.....++..+.+.
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 8999888887776653
No 138
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=5.7e-17 Score=144.41 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=112.7
Q ss_pred ccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCC
Q 013151 87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN 166 (448)
Q Consensus 87 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~ 166 (448)
.+|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 68999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 167 IPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 167 ~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887776654
No 139
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.68 E-value=3.2e-16 Score=151.40 Aligned_cols=132 Identities=22% Similarity=0.370 Sum_probs=121.3
Q ss_pred HHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCC
Q 013151 76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPN 155 (448)
Q Consensus 76 i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G 155 (448)
-........++++++|++++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++.++..+.+|
T Consensus 138 ~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G 216 (416)
T 3tnp_B 138 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR 216 (416)
T ss_dssp HHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESC
T ss_pred HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCC
Confidence 3455677899999999999999999999999999999999999999999999999999999998 778999999999999
Q ss_pred CeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhh
Q 013151 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208 (448)
Q Consensus 156 ~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll 208 (448)
++||+.+++.+.++.++++|.++|.++.++++.|..++..++......+..++
T Consensus 217 ~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L 269 (416)
T 3tnp_B 217 GSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269 (416)
T ss_dssp CEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSG
T ss_pred CEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887655444433
No 140
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.68 E-value=1.5e-16 Score=147.37 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=126.1
Q ss_pred HHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeec-CCCCeeEEEEecCC
Q 013151 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVG-EDGSEETVSQLQPN 155 (448)
Q Consensus 77 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~-~~g~~~~~~~l~~G 155 (448)
....+..+++++|+|..++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... .+|++.++..+.+|
T Consensus 151 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G 230 (299)
T 3shr_A 151 KHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKG 230 (299)
T ss_dssp HHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETT
T ss_pred HHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCC
Confidence 45567788999999999999999999999999999999999999999999999999999999877 68899999999999
Q ss_pred CeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhhc
Q 013151 156 SSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG 210 (448)
Q Consensus 156 ~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~~ 210 (448)
++||+.+++.+.++.++++|.++|+++.++++.|..++..+|.....++..+.++
T Consensus 231 ~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r 285 (299)
T 3shr_A 231 DWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK 285 (299)
T ss_dssp CEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred CEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988887654
No 141
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.67 E-value=4.6e-16 Score=136.21 Aligned_cols=121 Identities=15% Similarity=0.205 Sum_probs=110.3
Q ss_pred ccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCC-
Q 013151 89 SLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI- 167 (448)
Q Consensus 89 ~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~- 167 (448)
++++.++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++..+.+|++.++..+.+|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 168 PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 168 ~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
++.++++|.++|+++.++.+.|..++..+|.....++..+..
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 899999999999999999999999999999888777766654
No 142
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.66 E-value=1.7e-15 Score=140.23 Aligned_cols=129 Identities=23% Similarity=0.265 Sum_probs=116.4
Q ss_pred HHHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecC
Q 013151 75 KISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQP 154 (448)
Q Consensus 75 ~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~ 154 (448)
+........+++++++|++++++++..++..++.+.|++|++|+++||.++.+|||.+|.|+++. +| ..+..+.+
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g--~~~~~~~~ 105 (299)
T 3shr_A 31 ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGP 105 (299)
T ss_dssp HHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---TT--EEEEEECT
T ss_pred HHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CC--EEEEEeCC
Confidence 45667778899999999999999999999999999999999999999999999999999999975 34 57899999
Q ss_pred CCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhh
Q 013151 155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLL 208 (448)
Q Consensus 155 G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll 208 (448)
|++||+.+++.+.++.++++|.++|+++.++++.|..++...|..........+
T Consensus 106 G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l 159 (299)
T 3shr_A 106 GKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFL 159 (299)
T ss_dssp TCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999866554444433
No 143
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.66 E-value=2.1e-15 Score=139.02 Aligned_cols=132 Identities=19% Similarity=0.287 Sum_probs=119.9
Q ss_pred HHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCC-CeeEEEEecC
Q 013151 76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG-SEETVSQLQP 154 (448)
Q Consensus 76 i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~l~~ 154 (448)
.....+..+++++++|..++++.+..+...++...|++|++|+++|++++.+|+|.+|.|++++...+| ++..+..+.+
T Consensus 150 ~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~ 229 (291)
T 2qcs_B 150 RKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGP 229 (291)
T ss_dssp HHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECT
T ss_pred HHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCC
Confidence 345566788999999999999999999999999999999999999999999999999999999877665 5678999999
Q ss_pred CCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHh
Q 013151 155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL 207 (448)
Q Consensus 155 G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~l 207 (448)
|++|||.+++.+.++.++++|.++|+++.++++.|..++..+|......+...
T Consensus 230 G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 230 SDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp TCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred CCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766665544
No 144
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.65 E-value=1.3e-15 Score=133.08 Aligned_cols=116 Identities=14% Similarity=0.211 Sum_probs=107.8
Q ss_pred CCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCC----Cc
Q 013151 94 CSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI----PQ 169 (448)
Q Consensus 94 l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~----~~ 169 (448)
|+++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++||+.+++.+. ++
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888 89
Q ss_pred ceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 170 ~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.++++|.++|+++.++.+.|..++..+|.....++..+..
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988777766554
No 145
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=128.01 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=104.2
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcceeeeC-CCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFL-PGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
....+++++++|..++++++..++..++.+.|+ +|++|+++|+.++.+|||.+|.|+++. .+|++ ..+.+|++|
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~f 87 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSF 87 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEE
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCcc
Confidence 445678999999999999999999999999999 999999999999999999999999985 56665 558899999
Q ss_pred ecccccCCCCcceEE-EEeeeeeEEEechhhHHHHHHHHhhc
Q 013151 159 GEVSILCNIPQPYTV-CICELSRLLRIDKQSFTNILEIYFCD 199 (448)
Q Consensus 159 Ge~~ll~~~~~~~~~-~a~~~~~l~~l~~~~~~~ll~~~p~~ 199 (448)
|+.+++.+.++.+++ +|.++|+++.++++.|..++...+..
T Consensus 88 G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~ 129 (134)
T 2d93_A 88 GITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS 129 (134)
T ss_dssp SCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred ChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence 999999999998899 99999999999999999988766544
No 146
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.63 E-value=3.3e-15 Score=137.72 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=116.2
Q ss_pred HHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 78 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
......+++++|+|++++++++..++..++...|++|++|+++||+++.+|+|.+|.|+++. +| ..+..+.+|++
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~ 108 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGS 108 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCE
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCc
Confidence 44567789999999999999999999999999999999999999999999999999999987 44 46899999999
Q ss_pred eecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 158 fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
||+.+++.+.++.++++|.++|+++.++++.|..++..+|.........++.
T Consensus 109 fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 109 FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp ECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999877766655544
No 147
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.62 E-value=2.7e-15 Score=135.91 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=108.3
Q ss_pred ccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCC-Cc
Q 013151 91 FKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNI-PQ 169 (448)
Q Consensus 91 f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~-~~ 169 (448)
+..++++++..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++||+.+++.+. ++
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~ 133 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999888 89
Q ss_pred ceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 170 PYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 170 ~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888777666654
No 148
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.62 E-value=5.2e-16 Score=136.93 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=111.9
Q ss_pred HHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 82 MPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 82 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
+.+++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.++++ .+.+|++.++..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 356889999999999999999999999999999999999999999999999999995 788999999999999999998
Q ss_pred cccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 162 SILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 162 ~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 122 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD 122 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999988877776654
No 149
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.62 E-value=9.4e-16 Score=134.54 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=107.9
Q ss_pred ccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCC
Q 013151 87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCN 166 (448)
Q Consensus 87 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~ 166 (448)
+-|+|...++.....+...++.+.|++|++|+++|++++.+|||.+|.|+++..+.+|++.++..+.+|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C-CcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhhc
Q 013151 167 I-PQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG 210 (448)
Q Consensus 167 ~-~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~~ 210 (448)
. ++.++++|.++|+++.++++.|..++..+|.....++..+...
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~ 127 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH 127 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 6 8999999999999999999999999999999888887776653
No 150
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.61 E-value=6.1e-15 Score=145.46 Aligned_cols=132 Identities=23% Similarity=0.295 Sum_probs=122.0
Q ss_pred HHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCC--eeEEEEecC
Q 013151 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS--EETVSQLQP 154 (448)
Q Consensus 77 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~--~~~~~~l~~ 154 (448)
........++++++|++++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++....+|+ +.++..+.+
T Consensus 36 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~ 115 (469)
T 1o7f_A 36 DVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGI 115 (469)
T ss_dssp HHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECT
T ss_pred HHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccC
Confidence 445567789999999999999999999999999999999999999999999999999999999888885 488999999
Q ss_pred CCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 155 G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
|++||+.+ +.+.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 116 G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 169 (469)
T 1o7f_A 116 GTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYG 169 (469)
T ss_dssp TCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTS
T ss_pred CCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999988777665544
No 151
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.61 E-value=2e-15 Score=145.80 Aligned_cols=130 Identities=18% Similarity=0.307 Sum_probs=112.7
Q ss_pred HHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCC------CCeeEEEE
Q 013151 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED------GSEETVSQ 151 (448)
Q Consensus 78 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~------g~~~~~~~ 151 (448)
...+..+++++++|..++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|++++...+ |++.++..
T Consensus 262 ~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~ 341 (416)
T 3tnp_B 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIAR 341 (416)
T ss_dssp SSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEE
T ss_pred HHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEE
Confidence 445667889999999999999999999999999999999999999999999999999999987665 88889999
Q ss_pred ecCCCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHh
Q 013151 152 LQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL 207 (448)
Q Consensus 152 l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~l 207 (448)
+.+|++|||.+++.+.++.++++|.++|.++.++++.|..++..+|......+..+
T Consensus 342 l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~ 397 (416)
T 3tnp_B 342 CFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397 (416)
T ss_dssp ECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC----
T ss_pred eCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765555443
No 152
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.61 E-value=9.2e-16 Score=137.74 Aligned_cols=123 Identities=25% Similarity=0.321 Sum_probs=110.4
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++++++|+|++++++++..++..++.+.|++|++|+++||+++.+|+|.+|.++++. +|+ .+..+.+|++||
T Consensus 4 ~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fG 78 (246)
T 3of1_A 4 RLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEEC
T ss_pred HHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeee
Confidence 346789999999999999999999999999999999999999999999999999999986 344 368999999999
Q ss_pred cccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHh
Q 013151 160 EVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNL 207 (448)
Q Consensus 160 e~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~l 207 (448)
+.+++.+.++.++++|.++|.++.++++.|..++...|.........+
T Consensus 79 e~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 126 (246)
T 3of1_A 79 ELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDL 126 (246)
T ss_dssp HHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHH
T ss_pred hhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876555444333
No 153
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=142.18 Aligned_cols=127 Identities=27% Similarity=0.348 Sum_probs=115.9
Q ss_pred HHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 78 QTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 78 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
+.....+++++++|++++++++..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. +| ..+..+.+|++
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~ 199 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGS 199 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCC
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCE
Confidence 45567889999999999999999999999999999999999999999999999999999996 33 36888999999
Q ss_pred eecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 158 FGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 158 fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
||+.+++.+.++.++++|.++|.++.++++.|..++..+|.........++.
T Consensus 200 fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 200 FGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp BCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887766555443
No 154
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=143.79 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=118.6
Q ss_pred HHHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCC-eeEEEEecC
Q 013151 76 ISQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGS-EETVSQLQP 154 (448)
Q Consensus 76 i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~-~~~~~~l~~ 154 (448)
.....+..+++++++|..++++++..++..++...|++|++|+++|+.++.+|||.+|.|++++...+|+ +..+..+.+
T Consensus 241 ~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~ 320 (381)
T 4din_B 241 RKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGP 320 (381)
T ss_dssp HHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECT
T ss_pred HHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCC
Confidence 3456677889999999999999999999999999999999999999999999999999999998766655 567999999
Q ss_pred CCeeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhH
Q 013151 155 NSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTN 206 (448)
Q Consensus 155 G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ 206 (448)
|++|||.+++.+.++.++++|.++|.++.++++.|..++..+|...+..+..
T Consensus 321 Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~ 372 (381)
T 4din_B 321 SDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQR 372 (381)
T ss_dssp TCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHH
T ss_pred CCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888766555443
No 155
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.60 E-value=9e-16 Score=135.60 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=110.2
Q ss_pred HhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccc
Q 013151 84 YIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSI 163 (448)
Q Consensus 84 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~l 163 (448)
+++++|+|.+++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++ .+.+|++.++..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 4678999999999999999999999999999999999999999999999999997 78899999999999999999
Q ss_pred cCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 164 LCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 164 l~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.++.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 6788999999999999999999999999999988887776654
No 156
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.1e-15 Score=133.47 Aligned_cols=119 Identities=18% Similarity=0.401 Sum_probs=109.2
Q ss_pred HHHhhHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCC
Q 013151 77 SQTLYMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNS 156 (448)
Q Consensus 77 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~ 156 (448)
....+..+++++|+|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.+++++...+ .+..+.+|+
T Consensus 119 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~----~~~~l~~g~ 194 (246)
T 3of1_A 119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG----VINKLKDHD 194 (246)
T ss_dssp HHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE----EEEEEETTC
T ss_pred HHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc----eEEEcCCCC
Confidence 3456678899999999999999999999999999999999999999999999999999999874322 789999999
Q ss_pred eeecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhc
Q 013151 157 SFGEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCD 199 (448)
Q Consensus 157 ~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~ 199 (448)
+|||.+++.+.++.++++|.++|+++.++++.|..++..+|..
T Consensus 195 ~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~ 237 (246)
T 3of1_A 195 YFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDV 237 (246)
T ss_dssp EECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred cccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence 9999999999999999999999999999999999999877654
No 157
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.59 E-value=1.9e-16 Score=150.13 Aligned_cols=121 Identities=21% Similarity=0.312 Sum_probs=0.5
Q ss_pred HHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeeccc
Q 013151 83 PYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS 162 (448)
Q Consensus 83 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ 162 (448)
+.++++|+|++++++++..+...++.+.++|||+|+++||+++++|+|.+|.++++..+ ...+++|++|||.+
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~ 300 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMA 300 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehH
Confidence 47889999999999999999999999999999999999999999999999999998643 25789999999999
Q ss_pred ccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhhc
Q 013151 163 ILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLEG 210 (448)
Q Consensus 163 ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~~ 210 (448)
++.+.++.++++|.++|+++.++++++.++++++|+......+.+.++
T Consensus 301 ~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 301 LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp ------------------------------------------------
T ss_pred HhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887766543
No 158
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.58 E-value=4.3e-15 Score=133.74 Aligned_cols=122 Identities=16% Similarity=0.096 Sum_probs=112.6
Q ss_pred hhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeeccccc
Q 013151 85 IEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSIL 164 (448)
Q Consensus 85 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll 164 (448)
+.....|..++++++..+...++.+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+ ++
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l 88 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LY 88 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CS
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ec
Confidence 4445556899999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 165 CNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 165 ~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
.+. +.++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 89 ~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 89 PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 777 99999999999999999999999999999988877776654
No 159
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.54 E-value=5.4e-14 Score=125.50 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=104.6
Q ss_pred cCCCHHHHHHHHh--hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCc
Q 013151 92 KGCSSEFINQIVI--RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQ 169 (448)
Q Consensus 92 ~~l~~~~~~~l~~--~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~ 169 (448)
++++++++..++. .++.+.|++|++|+++||+++.+|||.+|.|++++.+.+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4688999999885 599999999999999999999999999999999999999999999999 9999999999988864
Q ss_pred --ceEEEEe-eeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 170 --PYTVCIC-ELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 170 --~~~~~a~-~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
..++.|. ++|+++.++++.|..++..+|.....++..+..
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 6777777 599999999999999999999988887776654
No 160
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.50 E-value=2.1e-13 Score=134.38 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=106.9
Q ss_pred hhHHHhhccccccCCCHHHHHHHHhhcce-eeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 80 LYMPYIEKVSLFKGCSSEFINQIVIRVHE-EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 80 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~-~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
...++++++|+|..++++.+..++..+.. ..|++|++|+++||.++.+|||.+|.|+++.. |+ .++..+.+|++|
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---~~-~~~~~l~~G~~f 409 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET---TT-EEEEEEETTCEE
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc---CC-eeEEEecCCCEE
Confidence 34578999999999999999999999985 48999999999999999999999999999872 33 379999999999
Q ss_pred ecccccCCCCcceEEEEee-eeeEEEechhhHHHHHHHHhhcchhhhh
Q 013151 159 GEVSILCNIPQPYTVCICE-LSRLLRIDKQSFTNILEIYFCDGRKVLT 205 (448)
Q Consensus 159 Ge~~ll~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~p~~~~~il~ 205 (448)
|+.+++.+.++.++++|.+ +|+++.++++.|..++..+|.....+..
T Consensus 410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 9999999999999999998 6999999999999999999988766543
No 161
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.49 E-value=9.9e-14 Score=124.21 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=104.4
Q ss_pred HHHHHHHHhhcc---eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCC--cc
Q 013151 96 SEFINQIVIRVH---EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIP--QP 170 (448)
Q Consensus 96 ~~~~~~l~~~~~---~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~--~~ 170 (448)
++++..+..... .+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+.+ +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 9999999999999999999999999999999999999999999999999999999998876 45
Q ss_pred eEEEEeeeeeEEEechhhHHHHHHHHhhcchhhhhHhhh
Q 013151 171 YTVCICELSRLLRIDKQSFTNILEIYFCDGRKVLTNLLE 209 (448)
Q Consensus 171 ~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~il~~ll~ 209 (448)
++++|.++|+++.++++.|..++..+|.....++..+..
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999888777766544
No 162
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.48 E-value=3.2e-13 Score=144.93 Aligned_cols=121 Identities=26% Similarity=0.332 Sum_probs=110.5
Q ss_pred hHHHhhccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecC--CCCeeEEEEecCCCee
Q 013151 81 YMPYIEKVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGE--DGSEETVSQLQPNSSF 158 (448)
Q Consensus 81 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~--~g~~~~~~~l~~G~~f 158 (448)
....|+++++|+.+++.++..|+..++...|++|++||++||.++.+|+|.+|.|.|+.... ++.+.++..+.+|++|
T Consensus 40 I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sF 119 (999)
T 4f7z_A 40 IFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAF 119 (999)
T ss_dssp HHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEE
T ss_pred HHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcch
Confidence 34568999999999999999999999999999999999999999999999999999987543 4567789999999999
Q ss_pred ecccccCCCCcceEEEEeeeeeEEEechhhHHHHHHHHhhcchh
Q 013151 159 GEVSILCNIPQPYTVCICELSRLLRIDKQSFTNILEIYFCDGRK 202 (448)
Q Consensus 159 Ge~~ll~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~p~~~~~ 202 (448)
|| +++.+.+|+++++|.++|+++.+++..|..++..+|+....
T Consensus 120 GE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~ 162 (999)
T 4f7z_A 120 GE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (999)
T ss_dssp CG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred hh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence 99 89999999999999999999999999999999998865443
No 163
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.43 E-value=4.1e-13 Score=136.96 Aligned_cols=121 Identities=19% Similarity=0.329 Sum_probs=110.7
Q ss_pred HhhHHHhhccccccCCCHHHHHHHHhhcc-eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 79 TLYMPYIEKVSLFKGCSSEFINQIVIRVH-EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 79 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~-~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
....+.++++++|.+++++++..++..+. .+.|++|++|+++||+++.+|+|.+|.|++++. |+ .++..+.+|++
T Consensus 28 ~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~il~~l~~Gd~ 103 (694)
T 3cf6_E 28 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDD 103 (694)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EEEEEEETTCE
T ss_pred HHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EEEEEeCCCCE
Confidence 34567899999999999999999999998 689999999999999999999999999999973 44 68999999999
Q ss_pred eecccccCCCCcceEEEEee-eeeEEEechhhHHHHHHHHhhcchhh
Q 013151 158 FGEVSILCNIPQPYTVCICE-LSRLLRIDKQSFTNILEIYFCDGRKV 203 (448)
Q Consensus 158 fGe~~ll~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~p~~~~~i 203 (448)
||+.+++.+.++.++++|.+ +|+++.++++.|..++..+|.....+
T Consensus 104 fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 104 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp ECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred eehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 99999999999999999999 59999999999999999999886654
No 164
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.39 E-value=9.9e-13 Score=113.43 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=83.4
Q ss_pred eeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechhh
Q 013151 109 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQS 188 (448)
Q Consensus 109 ~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~ 188 (448)
+.|++|++|+++|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+ +++.+.++.++++|.++|+++.++++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5799999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhhHh
Q 013151 189 FTNILEIYFCDGRKVLTNL 207 (448)
Q Consensus 189 ~~~ll~~~p~~~~~il~~l 207 (448)
|. |.....++..+
T Consensus 81 ~~------p~~~~~~~~~l 93 (195)
T 3b02_A 81 MD------HEALHRVARNL 93 (195)
T ss_dssp CC------HHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHH
Confidence 88 44444444443
No 165
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.33 E-value=8.8e-12 Score=133.80 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=103.4
Q ss_pred HhhHHHhhccccccCCCHHHHHHHHhhcceee-eCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 79 TLYMPYIEKVSLFKGCSSEFINQIVIRVHEEF-FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 79 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~-~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
....+.++++|.|+.++......++..+.... +++|++|++|||.++.+|||.+|.|+|++ .++ ..+..+++||+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~-~~v~~L~~Gd~ 408 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCC-cceEEecCCCc
Confidence 34557789999999999999999999988655 57899999999999999999999999986 222 35788999999
Q ss_pred eecccccCCCCcceEEEEeee-eeEEEechhhHHHHHHHHhhc
Q 013151 158 FGEVSILCNIPQPYTVCICEL-SRLLRIDKQSFTNILEIYFCD 199 (448)
Q Consensus 158 fGe~~ll~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~p~~ 199 (448)
|||.+++.+.||.++++|.++ |+++.+++++|..++......
T Consensus 409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~~ 451 (999)
T 4f7z_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVEAN 451 (999)
T ss_dssp ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHHS
T ss_pred ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHHh
Confidence 999999999999999999885 999999999999999876544
No 166
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.28 E-value=4.5e-12 Score=109.96 Aligned_cols=86 Identities=24% Similarity=0.292 Sum_probs=78.5
Q ss_pred HhhcceeeeCCCCeEEecCCcc--CeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeee
Q 013151 103 VIRVHEEFFLPGEVIMEQGNVV--DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSR 180 (448)
Q Consensus 103 ~~~~~~~~~~~g~~i~~~g~~~--~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~ 180 (448)
...++.+.|++|++|+++|+++ +.+|+|.+|.|+++..+++|++.++..+.+|++||+ +++.+.++.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567889999999999999999 999999999999999999999999999999999999 8888899999999999999
Q ss_pred EEEechhhHH
Q 013151 181 LLRIDKQSFT 190 (448)
Q Consensus 181 l~~l~~~~~~ 190 (448)
++.+ .+.|.
T Consensus 81 v~~i-~~~~~ 89 (202)
T 2zcw_A 81 LEPL-PENPD 89 (202)
T ss_dssp EEEC-CSSCC
T ss_pred EEEE-hHhcC
Confidence 9999 88775
No 167
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=96.49 E-value=0.00075 Score=58.68 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhhhhHHHhhccCCHHHHH
Q 013151 7 RGLPENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVIY 74 (448)
Q Consensus 7 ~~~~~~~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~~f~~d~~~~~p~~~~~ 74 (448)
.+....|.++|.+++++|.+|++++|+++. + +++|+++ +++|+++.+|.....
T Consensus 35 ~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~----------~----~~~y~~~-~iiDllailP~~~~~ 87 (223)
T 1orq_C 35 GEYLVRLYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLLA 87 (223)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHHHHHHTTS----------C----HHHHHHH-HHHHCTTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHcccc----------c----HHHHHHH-hHHHHHHHHHHHHHH
Confidence 444566899999999999999999999862 1 4799998 999999999987653
No 168
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=92.84 E-value=0.017 Score=56.59 Aligned_cols=49 Identities=20% Similarity=0.423 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhh-hhHHHhhccCCHHHH
Q 013151 11 ENLSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLPWDVI 73 (448)
Q Consensus 11 ~~~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~-~f~~d~~~~~p~~~~ 73 (448)
..|.++|.++.++|.+|++++|+++. . .++|+++ |.++|+++.+|..+.
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~~---~-----------k~~Y~ks~wniiDli~iip~~i~ 288 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFACP---S-----------KAGFFTNIMNIIDIVAIIPYYVT 288 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSS---C-----------SSSSTTSHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC---c-----------HHHHHhchhHHHHHHHHHHHHHH
Confidence 44889999999999999999999751 1 1479999 899999999998654
No 169
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=88.24 E-value=0.22 Score=38.79 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhhhhHHHhhccCCHHHH
Q 013151 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVI 73 (448)
Q Consensus 13 ~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~~f~~d~~~~~p~~~~ 73 (448)
+.++|.++-++|.+|+++++.++- + .++|++ |-++|+++.+|....
T Consensus 39 l~~~d~~~~~iFt~E~~lRl~~~~---~-----------~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 39 LYLVDLILVIILWADYAYRAYKSG---D-----------PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---S-----------TTTTTT-TCGGGTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC---C-----------HHHHHH-HHHHHHHHHHHHHHH
Confidence 778999999999999999999641 1 247899 999999999998644
No 170
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=80.74 E-value=0.61 Score=36.97 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhhhhHHHhhccCCHHHH
Q 013151 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKSSFIIDLLSCLPWDVI 73 (448)
Q Consensus 13 ~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~~f~~d~~~~~p~~~~ 73 (448)
+.++|.++-++|.+|+++++..+. + .++|+++ -++|+++.+|....
T Consensus 54 ~~~id~~~~~iF~~Ey~lRl~~a~----------~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 54 LYLVDLILVIILWADYAYRAYKSG----------D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----------C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC----------c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 778999999999999999999752 1 3478887 77899999998744
No 171
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=76.01 E-value=22 Score=26.56 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=42.8
Q ss_pred ceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEec
Q 013151 107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRID 185 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~ 185 (448)
....+.||..+-.. ...+++++|++|.+++.. +|+ ...+++||.+--.+ +.++..... .+.++++.+.
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~---~~~l~~GD~v~ip~---g~~H~~~~~-~~~~~~l~v~ 110 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGE---TVTAGPGEIVYMPK---GETVTIRSH-EEGALTAYVT 110 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTE---EEEECTTCEEEECT---TCEEEEEEE-EEEEEEEEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCE---EEEECCCCEEEECC---CCEEEEEcC-CCCeEEEEEE
Confidence 34567888766544 378899999999999975 444 45799999875333 333333322 1455555443
No 172
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=75.00 E-value=5.2 Score=38.87 Aligned_cols=142 Identities=17% Similarity=0.095 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcC--------------CHHHHHHHHHcCCCCCCCC
Q 013151 237 LRVNSAAYHGDLYQLKGLI----RAGADPNKTDYDGRSPLHLATSRG--------------YEDITLFLIQKGVDINIKD 298 (448)
Q Consensus 237 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~--------------~~~~v~~Ll~~~~~~~~~~ 298 (448)
..|...++.|+++-...++ +.|..+|.. -.+.|..|+... -.++.+.+.+.|..+|...
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556667765444433 446555432 233444444321 1234555556666665432
Q ss_pred CCCCcHHHHHHHcCChhHH----HHHHHcCCcccccCCchhHHHHHhcCCHHH----HHHHHHCCCCCCCCCCCCCcHHH
Q 013151 299 KFGNTPLLEAIKCGHDGVT----SLLVKEGASLNVDDAGSFLCTAVARGDSDF----LKRVLSNGVDPSSRDYDHRTPLH 370 (448)
Q Consensus 299 ~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~~l~~A~~~~~~~~----v~~Ll~~g~~~~~~d~~g~TpLh 370 (448)
. .+.+...++.|+.+-+ +.+.+.|..++...-++.+...+..|+.+- .+.+.+.|..++.... .+.+.
T Consensus 108 y--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~ 183 (501)
T 4g26_A 108 F--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLK 183 (501)
T ss_dssp H--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHH
T ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHH
Confidence 1 2344555666775433 333445666665555555666677777643 3444456666554322 23445
Q ss_pred HHHHcCcHHHHHHHH
Q 013151 371 VAASEGLYLMAKLLL 385 (448)
Q Consensus 371 ~A~~~~~~~~v~~Ll 385 (448)
..+..|+.+-+..++
T Consensus 184 ~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 184 VSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHhhCCCHHHHHHHH
Confidence 556667665444333
No 173
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=74.01 E-value=21 Score=30.29 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=51.6
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
.+....+.||+.+-..--+.+.+++|++|.+++.. +|+ ...+.+|+++--.+ ..+..+++.+++.++.+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~---~~~l~~Gd~~~~p~-----~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENN---KKTISNGDFLEITA-----NHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSC---EEEEETTEEEEECS-----SCCEEEEESSSEEEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCE---EEEECCCCEEEECC-----CCCEEEEECCCcEEEEE
Confidence 34566789999998777789999999999999975 444 35788888764322 23466778888888766
Q ss_pred c
Q 013151 185 D 185 (448)
Q Consensus 185 ~ 185 (448)
.
T Consensus 107 ~ 107 (227)
T 3rns_A 107 G 107 (227)
T ss_dssp E
T ss_pred E
Confidence 3
No 174
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=72.56 E-value=26 Score=25.78 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=43.6
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEE
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLL 182 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~ 182 (448)
+....++||..+-..--+..++++|++|.+++.. +|+ ...+.+|+.+--.+ +. ..++++.+++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ip~---~~--~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA---QRRLHQGDLLYLGA---GA--AHDVNAITNTSLL 103 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE---EEEECTTEEEEECT---TC--CEEEEESSSEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEECC---CC--cEEEEeCCCcEEE
Confidence 4455678898876655566799999999999875 333 46788998765332 22 3445555555433
No 175
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=71.62 E-value=27 Score=25.49 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=40.0
Q ss_pred eeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 109 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 109 ~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
..+++|..+-....+..++++|++|.+++.. +|+ ...+.+|+.+--.+ +.++ ...+.+++.++.+
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~i~~---~~~H--~~~~~~~~~~~~i 107 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ---KIDLVPEDVLMVPA---HKIH--AIAGKGRFKMLQI 107 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE---EEEECTTCEEEECT---TCCB--EEEEEEEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE---EEEecCCCEEEECC---CCcE--EEEeCCCcEEEEE
Confidence 3456776554444456789999999999865 333 45789998765332 3333 3344455555543
No 176
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=62.18 E-value=22 Score=25.65 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=33.6
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
.....+.||..-.+ -...++++|++|.+.+.. .+|+ ...+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~---~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGK---KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCC---EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCC---EEEECCCCEEE
Confidence 33556788876554 346899999999999875 2244 45789998775
No 177
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=59.46 E-value=16 Score=29.74 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=37.7
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....+.||...-..-..++++++|++|++++...+.+|. ....+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~--~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc--EEEEECCCCEEE
Confidence 4455778887765444456899999999999876555543 356899999875
No 178
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=58.31 E-value=16 Score=29.60 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.6
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
+....++||...-.--....++.+|++|.+++.. .+|+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge---~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGA---KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGC---EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCe---EEEECCCCEE
Confidence 4455677776533222334578899999999874 2233 4578999997
No 179
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=57.51 E-value=40 Score=23.61 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=32.0
Q ss_pred ceeeeCCCCeEEecCCc-cCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~-~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....++||..+-..--. ..++++|++|.+.+.. +|+ ...+.+|+.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 34567888776433323 4679999999998864 333 46788998764
No 180
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=55.44 E-value=51 Score=26.25 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=33.2
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+-..--...++++|++|.+.+.. +|+ ...+.+|+++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR---VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEEE
Confidence 3345677777654333357899999999998875 333 56788998764
No 181
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=55.20 E-value=29 Score=25.81 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=34.8
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
.+....++||..+-..--...++++|++|.+++.. +|+ ...+.+|+.+-
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ 90 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEE---TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTEEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCE---EEEeCCCCEEE
Confidence 34456778888765444446889999999999875 333 36788888764
No 182
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=55.11 E-value=39 Score=24.23 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=33.2
Q ss_pred cceeeeCCCCeEEec--CCc-cCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQ--GNV-VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~--g~~-~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+-.. --. ..++++|++|.+.+.. +++ ...+.+|+.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH---TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE---EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 344567888876433 233 6799999999998875 333 45788888764
No 183
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=54.98 E-value=32 Score=33.07 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=43.5
Q ss_pred HHHhhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 101 QIVIRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 101 ~l~~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
.+-..+....+.||..+- +-....+++++|++|.+.+...+.+|+......+.+||+|--
T Consensus 364 ~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vv 424 (493)
T 2d5f_A 364 QFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVV 424 (493)
T ss_dssp HHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred ccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEE
Confidence 333456667788888754 333446899999999999887677676554567999998753
No 184
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=54.90 E-value=30 Score=33.14 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=39.1
Q ss_pred cceeeeCCCCeEEec-CCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQ-GNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~-g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....+.||..+-.- ....+++++|++|.+.+...+.+|.+.....+.+||++-
T Consensus 340 ~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 340 AEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp EEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 445566777765322 233689999999999998777777665566799999874
No 185
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=53.95 E-value=30 Score=33.45 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=42.7
Q ss_pred HHhhcceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 102 IVIRVHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 102 l~~~~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+-..+....+.||..+-. -...++++++|++|.+.+...+.+|.+.....+.+||++-
T Consensus 370 l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 370 LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 334556667888887543 3334689999999999998777777765566799999874
No 186
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=53.83 E-value=53 Score=24.26 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=32.2
Q ss_pred cceeeeCCCCeEEecCCc-cCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~-~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+-..--. ..++++|++|.+++.. .+|+ ...+.+|+.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGI---VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTC---EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCe---EEEeCCCCEEE
Confidence 444567888776443333 4788999999998853 2344 45688888764
No 187
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=53.33 E-value=33 Score=33.12 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCcHHHHHHHcCChh----HHHH
Q 013151 248 LYQLKGLIRAGADPNKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDG----VTSL 319 (448)
Q Consensus 248 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~ 319 (448)
.++++.+.+.|..+|... -.+.+...+..|+.+-+.-++ +.|..++... -.+.+...++.|..+ +.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHH
Confidence 356666777887766432 124556667788876554444 4677666432 123455567778865 4455
Q ss_pred HHHcCCcccccCCchhHHHHHhcCCHHHHHHHH
Q 013151 320 LVKEGASLNVDDAGSFLCTAVARGDSDFLKRVL 352 (448)
Q Consensus 320 Ll~~g~~~~~~~~~~~l~~A~~~~~~~~v~~Ll 352 (448)
+.+.|..++...-.+.+...+..|+.+-+..++
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 566788877766667788888888876554444
No 188
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=52.93 E-value=23 Score=25.07 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=32.0
Q ss_pred ceeeeCCCCeE-EecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 107 HEEFFLPGEVI-MEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 107 ~~~~~~~g~~i-~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
....++||... .+.-+....+++|++|.+++.. .+|. ....+.+|+.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~--~~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS--VTSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE--EEEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC--EEEEEcCCCEEEe
Confidence 34567788765 3333333459999999999864 2221 2467899988753
No 189
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=52.62 E-value=44 Score=32.25 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHhhcceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 102 IVIRVHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 102 l~~~~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
+-..+....+.||.+.-. -.-.++++.+|++|.+.+...+.+|+......+.+||.|--
T Consensus 392 LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~ 451 (531)
T 3fz3_A 392 LRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIV 451 (531)
T ss_dssp HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred CceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEE
Confidence 334566778889988643 33447899999999999988788887767788999998753
No 190
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=52.06 E-value=19 Score=27.23 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=31.1
Q ss_pred eeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 110 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 110 ~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...||..-.+..+ .+++++|++|.+.+.. ++|. ...+++||.+--.
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~---~~~l~~GD~~~ip 100 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGT---VHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCC---EEEEETTCEEEEC
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCe---EEEECCCCEEEEC
Confidence 4556665544333 3899999999998873 3444 3568999987633
No 191
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=51.51 E-value=65 Score=23.21 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=40.8
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEE
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLR 183 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~ 183 (448)
+....++||..+-..--...++++|++|.+.+.. +|+ ...+.+|+.+--.+ +. ....++..+++++.
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip~---~~--~H~~~~~~~~~~~~ 108 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQE---TYRVAEGQTIVMPA---GI--PHALYAVEAFQMLL 108 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEECT---TS--CEEEEESSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEEEECC---CC--CEEEEECCCceEEE
Confidence 3445678887764333346799999999998864 333 35788998774222 22 23344444555443
No 192
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=51.35 E-value=69 Score=26.95 Aligned_cols=67 Identities=24% Similarity=0.122 Sum_probs=44.8
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEE-eeeeeEE
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCI-CELSRLL 182 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a-~~~~~l~ 182 (448)
.+....++||..+-..--+.+.+++|++|.+++.. +|+ ...+.+|+++--.+ +. +..+.+ .++++++
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~---~~~l~~Gd~i~ip~---~~--~H~~~~~~~~~~~l 221 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK---PFIVKKGESAVLPA---NI--PHAVEAETENFKML 221 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE---EEEEETTEEEEECT---TS--CEEEECCSSCEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE---EEEECCCCEEEECC---CC--cEEEEeCCCCEEEE
Confidence 34556789998876555557789999999999875 343 46788998765332 22 344555 5565544
No 193
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=49.07 E-value=40 Score=30.80 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=37.0
Q ss_pred ceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....+.||...- +--....++++|++|++++...+.+|+.. ...+++||.+-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~-~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE-IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE-EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE-EEEEcCCCEEE
Confidence 345677887653 33343789999999999988766666433 46899998764
No 194
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=49.00 E-value=55 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=37.0
Q ss_pred hhcceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 104 IRVHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 104 ~~~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..+....++||..+-. +--...+.++|++|++.+.. +|+ ...+.+||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~---~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN---YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCE---EEEcCCCCEEE
Confidence 4566778899987653 44556789999999998874 444 45799999865
No 195
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=48.58 E-value=30 Score=27.82 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=37.3
Q ss_pred CCccCeEEEEEeeEEEEEeecCCC---CeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEech
Q 013151 121 GNVVDQLYFVCHGVLEEVGVGEDG---SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDK 186 (448)
Q Consensus 121 g~~~~~~y~v~~G~v~~~~~~~~g---~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~ 186 (448)
-++.++++++++|.+.+...+ +| +...-..+++|++|--.+ +.++ +-++...+..+.+.+
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP~---gvpH--sP~r~~e~v~lviEr 113 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLPG---NVPH--SPVRFADTVGIVVEQ 113 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEECT---TCCE--EEEECTTCEEEEEEE
T ss_pred CCCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcCC---CCCc--CCcccCCcEEEEEEe
Confidence 445679999999999887654 23 233457789999886433 3333 222335555555543
No 196
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=48.26 E-value=36 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=32.9
Q ss_pred cceeeeCCCCeE--EecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVI--MEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i--~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||... .+.....+++++|++|.+++.. +++ ...+.+|+.+-
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE---EEEeCCCCEEE
Confidence 334567788754 3444444799999999999875 333 46788898764
No 197
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=48.22 E-value=29 Score=27.78 Aligned_cols=46 Identities=11% Similarity=-0.034 Sum_probs=30.3
Q ss_pred eeeCC-CCe-EEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 109 EFFLP-GEV-IMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 109 ~~~~~-g~~-i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..++| |.. =-+.--.+..+++|++|.+++.. +|+ ...+.+|++|--
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g~---~~~L~~Gds~~i 140 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CKN---KFLSVKGSTFQI 140 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TTE---EEEEETTCEEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CCE---EEEEcCCCEEEE
Confidence 45666 432 11122346789999999999986 333 457899998753
No 198
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=47.84 E-value=40 Score=31.13 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=37.1
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....+.||...-..--...++++|++|.+++...+.+|+.. ...+.+||++-
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~-~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF-IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE-EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE-EEEeCCCCEEE
Confidence 445667888865322223789999999999988766566643 34789998764
No 199
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=47.78 E-value=57 Score=26.85 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred cceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCC--CCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGED--GSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~--g~~~~~~~l~~G~~fG 159 (448)
+....+.||...- +......++++|++|.+++...+.+ |.+.....+.+|+.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 4455778887653 3334467999999999988654332 2333367789998775
No 200
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=47.38 E-value=24 Score=26.31 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=31.4
Q ss_pred eeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 110 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 110 ~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...||..-+.. +..++++.|++|.+.+.. ++|. ...+++||.|---
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~---~~~l~aGD~~~~P 93 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADAD---PVKIGPGSIVSIA 93 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCC---CEEECTTEEEEEC
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCe---EEEECCCCEEEEC
Confidence 45666555544 334589999999999874 4454 4578999887533
No 201
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=47.00 E-value=78 Score=22.80 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=41.4
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
+....++||..+-..--...++++|++|.+++.. +|+ ...+.+|+.+---+ +. ....++..++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip~---~~--~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFVPP---HV--DHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEECT---TC--CEEEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEECc---CC--ceeeEeCCCcEEEEE
Confidence 3445678887653333336789999999998875 333 46788998764322 22 233444445555544
No 202
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=46.70 E-value=40 Score=24.14 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=39.2
Q ss_pred eCCCCeEEecCCccCeEEEEEeeEEEEEeecCCC-CeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechhhH
Q 013151 111 FLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDG-SEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQSF 189 (448)
Q Consensus 111 ~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~~~ 189 (448)
..+|+...+..+...++++|++|.+++.. +| + ...+.+|+.+--.+ +.++. ....+++.++.+.....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~~l~~Gd~~~ip~---~~~H~--~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF---ADGG---SMTIREGEMAVVPK---SVSHR--PRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE---TTSC---EEEECTTEEEEECT---TCCEE--EEEEEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE---CCCc---EEEECCCCEEEECC---CCcEe--eEeCCCeEEEEEECCCc
Confidence 34555443444334899999999998875 33 3 46789998764322 33333 33345677766655443
No 203
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=46.59 E-value=54 Score=31.20 Aligned_cols=58 Identities=5% Similarity=0.061 Sum_probs=43.0
Q ss_pred HHhhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 102 IVIRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 102 l~~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+-..+....+.||.+.. +-.-.++++++|++|.+.+...+.+|....-..+.+||.|-
T Consensus 320 l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 320 VRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 33455666778887754 33344789999999999998888888665556899999875
No 204
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=46.32 E-value=72 Score=24.59 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=31.8
Q ss_pred ceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....++||..+-..--...++++|++|.+.+.. +++. ...+.+|+.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP--ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC--CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE--EEEECCCCEEE
Confidence 345677777653322334789999999998875 3332 24688888775
No 205
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=45.43 E-value=32 Score=26.31 Aligned_cols=46 Identities=11% Similarity=-0.062 Sum_probs=31.5
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...+.||..-.+. ..+++++|++|.+++.. +|+ ...+.+||.+---
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~---~g~---~~~l~~GD~i~~p 106 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH---EGE---TMIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE---TTE---EEEEETTCEEEEC
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE---CCE---EEEECCCcEEEEC
Confidence 4457778432332 46899999999999875 344 3479999987533
No 206
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=44.65 E-value=1.3e+02 Score=25.59 Aligned_cols=64 Identities=14% Similarity=0.061 Sum_probs=40.8
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
...++||...-..- .+++.+|++|.+++.. +|+ ...+.+||++---+ +.++..... ++++++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~---~~~l~~Gd~~~~p~---~~~H~~~n~--~~~~~l~v 117 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGE---TRTLREYDYVYLPA---GEKHMLTAK--TDARVSVF 117 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSC---EEEECTTEEEEECT---TCCCEEEEE--EEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCE---EEEECCCCEEEECC---CCCEEEEeC--CCEEEEEE
Confidence 45678887654442 7789999999999874 444 35799998775333 334433322 55655544
No 207
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=44.41 E-value=47 Score=27.10 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=30.9
Q ss_pred eeeCCCCeEE---ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 109 EFFLPGEVIM---EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 109 ~~~~~g~~i~---~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..++||...- .......++++|++|.+++... ++.......+.+||++-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~--~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWG--DKENPKEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEES--CTTSCEEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEEC--CcCCcccEEECCCCEEE
Confidence 3566776543 1222346899999999998752 21112356899999875
No 208
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=44.41 E-value=39 Score=26.65 Aligned_cols=46 Identities=7% Similarity=-0.112 Sum_probs=30.4
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...+.||...-..--...++++|++|.+++.. +|+ ...+.+|+++-
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~---~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET---ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE---EEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 33456665543333345688999999999875 443 46788888764
No 209
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=44.11 E-value=50 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=30.1
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||...-..--...++++|++|.+++.. +|+ ...+.+|+.+-
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQG---EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSC---EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCE---EEEECCCCEEE
Confidence 34556665543223336789999999998864 333 35688888764
No 210
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=44.07 E-value=38 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=32.5
Q ss_pred ceeeeCCCCe--EEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEV--IMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~--i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....++||.. -.+.-....++++|++|.+.+.. +|+ ...+.+||.+-
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i~ 97 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END---QYPIAPGDFVG 97 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE---EEEeCCCCEEE
Confidence 3456788873 23333456899999999999874 333 46789998763
No 211
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=43.86 E-value=55 Score=24.70 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=31.3
Q ss_pred eeeeCCCCeEEecCCc-cCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNV-VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~-~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||..+-..--. ..++++|++|.+.+.. +|+ ...+.+|+.+-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK---DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE---EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE---EEEeCCCcEEE
Confidence 4567888765322222 4789999999998875 333 45788888764
No 212
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=43.69 E-value=68 Score=23.67 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred ceeeeCCCCeE--EecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVI--MEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i--~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....++||..+ .+.-+....+|+|++|.+.+.. +|+ ...+.+|+.+-
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE---KIELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE---EEEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 34566777655 2443444567889999998875 333 45788888764
No 213
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=43.51 E-value=59 Score=29.59 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=36.3
Q ss_pred cceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+-. ......++++|++|.+.+...+.+|+ .....+++||.+-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 33456778876643 23334899999999999876555565 2356789999875
No 214
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=42.90 E-value=75 Score=29.23 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=34.0
Q ss_pred eeeeCCCCeEEecCCcc-CeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNVV-DQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~-~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||...-..--.. .++++|++|.+++.....+|+. ....+.+||.+-
T Consensus 261 ~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ 312 (385)
T 1j58_A 261 LVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGY 312 (385)
T ss_dssp EEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEE
T ss_pred EEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEE
Confidence 34567777653322234 7999999999988764455542 246788999875
No 215
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=42.81 E-value=50 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=29.5
Q ss_pred eeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 110 FFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 110 ~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
.+.||..+=.---+.+++|+|++|.++... .+|+ ...+++|+.+--
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v--~~g~---~~~l~pGd~v~i 183 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL--RNAP---DLMLEPGQTRFH 183 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE--TTSC---CEEECTTCEEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE--CCCC---EEecCCCCEEEc
Confidence 345554433333457899999999998875 2233 457888887643
No 216
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=42.46 E-value=60 Score=30.05 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCC--------------CCCCCcHHHHHHHcCCHHHHHHHHH
Q 013151 240 NSAAYHGDLYQLKGLIRAGADPNKT--------------DYDGRSPLHLATSRGYEDITLFLIQ 289 (448)
Q Consensus 240 ~~A~~~g~~~~v~~Ll~~g~~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 289 (448)
...+..|+...|+..+..|.|++.+ -.-|.|.+|+|++..+.+++..|+.
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 3456689999999999999887643 1347788888888888777777775
No 217
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=42.22 E-value=1e+02 Score=23.67 Aligned_cols=52 Identities=15% Similarity=-0.097 Sum_probs=31.4
Q ss_pred eeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||..+- +.-...+++++|++|.+.+...+..+.......+.+|+.+-
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ 99 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL 99 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE
Confidence 44667776542 22333568999999999987532221111226788888654
No 218
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=42.22 E-value=35 Score=27.25 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=30.7
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||..+-..--...++++|++|.+++.. +|+ ...+.+|+.+-
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA---VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 34556666543333345688999999999865 343 46788898764
No 219
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=41.62 E-value=6.4 Score=34.88 Aligned_cols=41 Identities=12% Similarity=0.339 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhh-hhHHHhhccCC
Q 013151 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCLP 69 (448)
Q Consensus 13 ~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~-~f~~d~~~~~p 69 (448)
+.++|.++-++|.+|+++++... + ++|+++ |-++|++..+|
T Consensus 63 l~~~e~~~~~iF~~E~~lrl~~~------------~----~~y~~~~wn~~Dl~~v~~ 104 (285)
T 3rvy_A 63 TTLFNQIVITIFTIEIILRIYVH------------R----ISFFKDPWSLFDFFVVAI 104 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT------------G----GGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------h----HHHHcCChHHhHHHHHHH
Confidence 77899999999999999999863 1 579998 99999986555
No 220
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=41.05 E-value=51 Score=27.09 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=43.3
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEE--eeeeeEE
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCI--CELSRLL 182 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a--~~~~~l~ 182 (448)
.....++.||..+-...-.+.++.+|++|..+ +.. ..+.+|+++-.-. +. ..+..+ .+.|.++
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~------~~~~~Gd~~~~p~---g~--~H~p~a~~~~gc~~l 190 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET------DRFGAGDIEIADQ---EL--EHTPVAERGLDCICL 190 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS------SEEETTCEEEECS---SC--CCCCEECSSSCEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc------EEECCCeEEEeCc---CC--ccCCEeCCCCCEEEE
Confidence 45677889999988777788999999999964 221 3588888865433 22 233334 5566665
Q ss_pred Ee
Q 013151 183 RI 184 (448)
Q Consensus 183 ~l 184 (448)
..
T Consensus 191 ~~ 192 (195)
T 2q1z_B 191 AA 192 (195)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 221
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=40.52 E-value=35 Score=26.36 Aligned_cols=65 Identities=6% Similarity=0.127 Sum_probs=40.0
Q ss_pred EecCCccCeEEEEEeeEEEEEeecC--CCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEechh
Q 013151 118 MEQGNVVDQLYFVCHGVLEEVGVGE--DGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDKQ 187 (448)
Q Consensus 118 ~~~g~~~~~~y~v~~G~v~~~~~~~--~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~~ 187 (448)
++.-+..+++|+|++|.+.+.-.+. ++.+...-.+.+|+++--.. + -.+.-.|.+.|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPk---G--veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPA---E--CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECT---T--CEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCC---C--ccCcccCCCceEEEEEEeC
Confidence 4556678999999999998875432 11112346678888775221 1 1244555677777766543
No 222
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=39.28 E-value=70 Score=27.21 Aligned_cols=48 Identities=8% Similarity=0.004 Sum_probs=33.3
Q ss_pred eeeeCC-CCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 108 EEFFLP-GEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 108 ~~~~~~-g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...++| |..+-..--...++++|++|.+++.. +|+ ...+.+||.+---
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EGC---TVEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TTE---EEEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEEC
Confidence 345788 77664444446789999999999875 333 3468999987533
No 223
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=39.09 E-value=92 Score=25.12 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=30.4
Q ss_pred eeeCCCCeEEe--cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 109 EFFLPGEVIME--QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 109 ~~~~~g~~i~~--~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..++||..... -.....++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~---~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQ---WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCE---EEEeCCCCEEE
Confidence 35567766542 22334689999999999875 333 45789999764
No 224
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=39.08 E-value=41 Score=26.11 Aligned_cols=53 Identities=13% Similarity=0.012 Sum_probs=35.5
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeeccc
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVS 162 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ 162 (448)
+...+++||..+-...-+..+.++|++|..+.. .|....-..+++|+++-...
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~ 98 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESA 98 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECT
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECc
Confidence 556789999888766566778899999998742 33221124567888765443
No 225
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=38.38 E-value=50 Score=26.53 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=35.7
Q ss_pred ccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEee-eeeEEEech
Q 013151 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICE-LSRLLRIDK 186 (448)
Q Consensus 123 ~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~-~~~l~~l~~ 186 (448)
+.++++++++|.+.+...+ +|+ ..-..+++|++|--.. +.++ +-++.+ .+..+.+.+
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~-~~~v~l~eGE~f~lP~---gvpH--~P~r~~~e~~~lviE~ 111 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGR-RERADLKEGDIFLLPP---HVRH--SPQRPEAGSACLVIER 111 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTCEEEECT---TCCE--EEEBCCTTCEEEEEEE
T ss_pred CCceEEEEEeeEEEEEEEc-CCc-eeeEEECCCCEEEeCC---CCCc--CccccCCCCEEEEEEe
Confidence 5789999999999887543 243 3457899999886433 3332 233333 555555443
No 226
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=37.18 E-value=1.2e+02 Score=23.71 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.3
Q ss_pred ccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 123 VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 123 ~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..+++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~---~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGR---KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTE---EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCE---EEEEcCCCEEE
Confidence 46789999999999874 444 46789999775
No 227
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=36.64 E-value=1e+02 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=33.9
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
+....++||..+-..--+..++++|++|.+++.. +|+ ...+.+|+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDV---TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTE---EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCE---EEEECCCCEE
Confidence 4445688888775544557889999999999875 343 4578888844
No 228
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=35.62 E-value=98 Score=29.70 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=43.2
Q ss_pred hhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 104 IRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 104 ~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..+....+.||.+.- +-.-.++++.+|++|.+.+...+.+|+...-..+.+||.|-
T Consensus 358 iS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 414 (496)
T 3ksc_A 358 LSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALT 414 (496)
T ss_dssp CEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred eeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 456667788887763 33345789999999999998888888765567899999875
No 229
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=35.23 E-value=44 Score=31.66 Aligned_cols=54 Identities=24% Similarity=0.240 Sum_probs=39.6
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
.+....+.||..+-..--.++++++|++|++.+...+.++. ....+++||.+--
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~~ 140 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC--EEEEecCCCEEEE
Confidence 34456788998765555567899999999998876555433 4678999998753
No 230
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=35.18 E-value=86 Score=29.11 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=46.4
Q ss_pred ceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEE-eeeeeEEEec
Q 013151 107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCI-CELSRLLRID 185 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a-~~~~~l~~l~ 185 (448)
....++||+..-..--....+|+|++|+..+.. +|+ ...+++||+|-.-+ +......-.. .+++.++.+.
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge---~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i~ 367 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGK---RFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSFN 367 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTE---EEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEEE
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCE---EEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEee
Confidence 455678888765444456789999999986553 443 46789999876433 2222222111 3456677666
Q ss_pred hhhHHHH
Q 013151 186 KQSFTNI 192 (448)
Q Consensus 186 ~~~~~~l 192 (448)
...+...
T Consensus 368 D~Pl~~~ 374 (394)
T 3bu7_A 368 DFPVMEK 374 (394)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 5544443
No 231
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=34.44 E-value=53 Score=23.92 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=28.7
Q ss_pred eeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 109 EFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 109 ~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..++||...-..--....+++|++|.+.+.. +++. ...+.+|+.+-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE--PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC--CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE--EEEeCCCCEEE
Confidence 4456666542222245688999999998875 3332 22688888764
No 232
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=34.36 E-value=89 Score=24.44 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=32.0
Q ss_pred ceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCC---CeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDG---SEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g---~~~~~~~l~~G~~fG 159 (448)
....++||...- +.- ...++++|++|.+.+.....++ .+.....+.+|+.+-
T Consensus 44 ~~~~~~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 344577776542 222 3567999999999887532111 111356788998764
No 233
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=33.99 E-value=1.3e+02 Score=28.56 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=42.8
Q ss_pred hhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 104 IRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 104 ~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..+....+.||.+.- +-.-.++++.+|++|.+.+...+.+|+...-..+.+||.|--
T Consensus 323 iS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvv 380 (465)
T 3qac_A 323 LSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVV 380 (465)
T ss_dssp CEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred eeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEE
Confidence 345566788887753 333447899999999999988888887666678999998853
No 234
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=33.97 E-value=17 Score=26.09 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=31.3
Q ss_pred cceeeeCCCCeEEecC-CccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCee
Q 013151 106 VHEEFFLPGEVIMEQG-NVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSF 158 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g-~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~f 158 (448)
.+...++||+-+-.+- ......|+|.+|.+.+.. .+|+. ....+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~-~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTR-SLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCE-ECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCce-EEEEecCCcEE
Confidence 3455788998875443 344567888999998863 44443 24456777654
No 235
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=32.86 E-value=1e+02 Score=29.25 Aligned_cols=57 Identities=9% Similarity=0.140 Sum_probs=42.4
Q ss_pred HhhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 103 VIRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 103 ~~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
-..+....+.||.+.- +-.-.++++-+|++|.+.+...+.+|+......+.+||.|-
T Consensus 322 giS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 379 (466)
T 3kgl_A 322 RLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLS 379 (466)
T ss_dssp TCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEE
Confidence 3445556677776653 32334789999999999998888888776677899999875
No 236
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=32.48 E-value=72 Score=27.92 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=37.9
Q ss_pred hhcceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 104 IRVHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 104 ~~~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..+....++||..+-. +-....+.++|++|+..+.. +|+ ...+.+||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~---~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQD---WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 4577788999999864 55556688999999998764 444 56789999864
No 237
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=31.99 E-value=37 Score=19.44 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 013151 237 LRVNSAAYHGDLYQLKGLIR 256 (448)
Q Consensus 237 ~~L~~A~~~g~~~~v~~Ll~ 256 (448)
-.+..||..|+.+.++.|-.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 35677999999999988743
No 238
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=31.45 E-value=63 Score=30.49 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=39.6
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
.+....+.||..+-..-...+++++|++|+..+...+.++ .....+++||.+-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~--~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS--RDSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC--EEEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC--CEEEEeCCCCEEE
Confidence 4556788899887665566889999999999887655433 2366899998874
No 239
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=31.17 E-value=66 Score=27.75 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=38.7
Q ss_pred eeeeCCCCeEEec-C-CccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 108 EEFFLPGEVIMEQ-G-NVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 108 ~~~~~~g~~i~~~-g-~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
...++||...-.. . ...+++++|++|.+++.. +|+ ...+.+||++---+ +.++.......+.++++.+
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~---~~~L~~Gd~~~~~~---~~~H~~~N~~~~~~~~l~v 132 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK---TFALSEGGYLYCPP---GSLMTFVNAQAEDSQIFLY 132 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE---EEEEETTEEEEECT---TCCCEEEECSSSCEEEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE---EEEECCCCEEEECC---CCCEEEEeCCCCCEEEEEE
Confidence 3456666544321 1 235679999999999875 444 46789998775333 3333333222344555444
No 240
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=30.35 E-value=92 Score=25.17 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred ccccccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeE
Q 013151 87 KVSLFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQL 127 (448)
Q Consensus 87 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~ 127 (448)
..|.|.+++-.+..+++.. .+||+|+|....++.+
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~l 47 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYC 47 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcE
Confidence 5799999999999888877 2599999999887653
No 241
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=29.42 E-value=1.2e+02 Score=26.31 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=41.8
Q ss_pred ceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCC-CCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEec
Q 013151 107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGED-GSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRID 185 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~-g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~ 185 (448)
-...+.||..--.....++++.+|++|++++.. + |+ ...+.+|+++=..+ +.++ +.+..+.++++.+.
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l---~~g~---~~~L~~Gds~y~p~---~~~H--~~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN---TSSS---SKKLTVDSYAYLPP---NFHH--SLDCVESATLVVFE 141 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC-----CC---CEEECTTEEEEECT---TCCC--EEEESSCEEEEEEE
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE---CCCc---EEEEcCCCEEEECC---CCCE--EEEeCCCEEEEEEE
Confidence 345677776532223447899999999999874 3 44 35789998775433 2222 23334566666654
Q ss_pred h
Q 013151 186 K 186 (448)
Q Consensus 186 ~ 186 (448)
+
T Consensus 142 k 142 (266)
T 4e2q_A 142 R 142 (266)
T ss_dssp E
T ss_pred e
Confidence 3
No 242
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=29.41 E-value=75 Score=29.76 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=38.9
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
.+....+.||..+-..-...+++++|++|+..+...+. |+. ....+++||.+-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~-~~~-~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNN-DDR-DSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECS-SCE-EEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEEC-CCC-eEEEecCCCEEE
Confidence 35566788988765555668899999999998876555 332 356899999874
No 243
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=28.61 E-value=1.6e+02 Score=27.86 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=42.8
Q ss_pred HHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCe--------------------eEEEEecCCCe
Q 013151 98 FINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE--------------------ETVSQLQPNSS 157 (448)
Q Consensus 98 ~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~--------------------~~~~~l~~G~~ 157 (448)
.+.-+--.+....+.||.++...=-.+.++++|++|+..+-...+++.+ +.+..+++||.
T Consensus 57 ~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv 136 (459)
T 2e9q_A 57 EFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDL 136 (459)
T ss_dssp HHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEE
T ss_pred hhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCE
Confidence 3333334555677899988754444588999999999988765554432 12568899998
Q ss_pred eecc
Q 013151 158 FGEV 161 (448)
Q Consensus 158 fGe~ 161 (448)
|--.
T Consensus 137 ~~iP 140 (459)
T 2e9q_A 137 LVVP 140 (459)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7543
No 244
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=28.06 E-value=70 Score=29.73 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=39.3
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCe
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSS 157 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~ 157 (448)
.+....+.||..+...--.++++++|++|+..+...+.++++ ...+++||.
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~--~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR--EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE--EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE--EEEECCCCc
Confidence 355667889888655545788999999999988877765553 678999998
No 245
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=27.76 E-value=66 Score=23.42 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=24.9
Q ss_pred CccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecc
Q 013151 122 NVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEV 161 (448)
Q Consensus 122 ~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 161 (448)
...+++++|++|.+++.. +|++. ...+.+||++--.
T Consensus 51 ~~~~E~~~Vl~G~~~l~~---~~~~~-~~~l~~Gd~i~ip 86 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC---EGDTA-PRVMRPGDWLHVP 86 (112)
T ss_dssp CSSEEEEEEEESCEEEEE---TTCSS-CEEECTTEEEEEC
T ss_pred CCccEEEEEEeCeEEEEE---CCEEE-EEEECCCCEEEEC
Confidence 356789999999999875 33320 1468999877533
No 246
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=27.57 E-value=1.3e+02 Score=21.16 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=30.1
Q ss_pred ceeeeCCCCeEEec-CCccCeE-EEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIMEQ-GNVVDQL-YFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~~~-g~~~~~~-y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....+++|..+-.. -+...++ ++|++|.+.+.. .+|+ ...+.+|+.+-
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~---~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDA---VIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGC---EEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCE---EEEECCCCEEE
Confidence 34457788766432 2222466 899999998864 1133 35688888764
No 247
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=26.53 E-value=77 Score=27.71 Aligned_cols=46 Identities=24% Similarity=0.196 Sum_probs=30.9
Q ss_pred eeeeCCCCeEE--ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIM--EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~--~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...++||...- ...-..+++++|++|++++.. +|+ ...+.+||++-
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v---~g~---~~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QGQ---VHAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SSC---EEEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE---CCE---EEEECCCCEEE
Confidence 44566776551 112236789999999999875 344 35789998764
No 248
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=26.43 E-value=1.9e+02 Score=21.09 Aligned_cols=81 Identities=12% Similarity=-0.075 Sum_probs=44.2
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeee--EEEec
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSR--LLRID 185 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~--l~~l~ 185 (448)
...++||...-..--...++++|++|.+.+.. +|+ ...+.+|+.+---+ +.+........++++ .+.++
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i~~---~~~H~~~~~~~~~~~~~~i~f~ 108 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIIIPL---DSEHHVINNNQEDFHFYTIWWD 108 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEECT---TCCEEEEECSSSCEEEEEEEEC
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEECC---CCcEEeEeCCCCCEEEEEEEEC
Confidence 34556665432222346789999999998875 333 46788888764322 233322222123333 33455
Q ss_pred hhhHHHHHHHHh
Q 013151 186 KQSFTNILEIYF 197 (448)
Q Consensus 186 ~~~~~~ll~~~p 197 (448)
.+-+..+....+
T Consensus 109 ~~~~~~~~~~~~ 120 (128)
T 4i4a_A 109 KESTLNFLTRLE 120 (128)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 555555555443
No 249
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.32 E-value=2.2e+02 Score=24.58 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=33.6
Q ss_pred cceeeeCCCCeEEe-cCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIME-QGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+-. .--...++++|++|.+++.. +|+ ...+.+||++-
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~---~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE---WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE---EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCE---EEEECCCCEEE
Confidence 44456788876633 22356789999999998875 333 46789998775
No 250
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=26.20 E-value=1.1e+02 Score=28.50 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=29.6
Q ss_pred ccCeEEEEEeeEEEEEeecC------CCCeeEEEEecCCCeeec
Q 013151 123 VVDQLYFVCHGVLEEVGVGE------DGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 123 ~~~~~y~v~~G~v~~~~~~~------~g~~~~~~~l~~G~~fGe 160 (448)
.+.++++|++|...+.-.+. +|.......+.+||.|--
T Consensus 259 ~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vv 302 (397)
T 2phl_A 259 KAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVI 302 (397)
T ss_dssp SCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEE
T ss_pred CCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEE
Confidence 46789999999988877665 565666788999998753
No 251
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.12 E-value=88 Score=27.19 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.3
Q ss_pred eeeCCCCeEEec-C-CccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 109 EFFLPGEVIMEQ-G-NVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 109 ~~~~~g~~i~~~-g-~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
..++||...-.. . ...+++.+|++|.+++.. +|+ ...+.+||++--
T Consensus 67 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~---~~~L~~GD~~~~ 114 (274)
T 1sef_A 67 ATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQE---THELEAGGYAYF 114 (274)
T ss_dssp EEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SSC---EEEEETTEEEEE
T ss_pred EEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE---CCE---EEEECCCCEEEE
Confidence 456676544322 1 224679999999999875 444 457899987753
No 252
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=25.88 E-value=1.5e+02 Score=27.45 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCcCCCCCCCCChhHHHHhcCCHHHHHHH
Q 013151 338 TAVARGDSDFLKRVLSNGVDPSSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 417 (448)
Q Consensus 338 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~v~~L 417 (448)
..+..|+...|+.-+.+|-|++.+ -|+--.+..+ +.+ . -.-|.|-+|+|++..+.+++..|
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~----lt~~e~~lln------------~~~--a-f~~g~tlvhlair~~r~~~l~~l 88 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQ----LTADEVRLLN------------RPS--A-FDVGYTLVHLAIRFQRQDMLAIL 88 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCC----CCHHHHHHHC------------CTT--T-CCTTCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcc----cCHHHHHHhC------------CCc--c-cccCchhhhhhhhhhhhhHHHHh
Confidence 445677888888888777776543 2222222211 111 1 23477888888888888888888
Q ss_pred HHh
Q 013151 418 EDA 420 (448)
Q Consensus 418 l~~ 420 (448)
+..
T Consensus 89 l~~ 91 (454)
T 3zrh_A 89 LTE 91 (454)
T ss_dssp HHH
T ss_pred hhc
Confidence 763
No 253
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=25.12 E-value=1.7e+02 Score=20.11 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=33.6
Q ss_pred ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEec
Q 013151 119 EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRID 185 (448)
Q Consensus 119 ~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~ 185 (448)
+.-+...++++|++|.+.+.. +|+ ...+.+|+.+--.+ +.++ .....+++.++.++
T Consensus 45 H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~~ip~---~~~H--~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 45 HEHADTDEVFIVMEGTLQIAF---RDQ---NITLQAGEMYVIPK---GVEH--KPMAKEECKIMIIE 100 (102)
T ss_dssp BCCTTCCEEEEEEESEEEEEC---SSC---EEEEETTEEEEECT---TCCB--EEEEEEEEEEEEEE
T ss_pred eeCCCCcEEEEEEeCEEEEEE---CCE---EEEEcCCCEEEECC---CCeE--eeEcCCCCEEEEEE
Confidence 333334789999999998864 333 35678888664222 3333 33344566666554
No 254
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=24.88 E-value=1.5e+02 Score=23.33 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=42.2
Q ss_pred hcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEe----eeee
Q 013151 105 RVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCIC----ELSR 180 (448)
Q Consensus 105 ~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~----~~~~ 180 (448)
.....+++||..+-...-++....+|++|..+. ++.| ..+.+|+++-+.+ ....+..+. ++|.
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~---~e~~-----~~~~~Gd~~~~P~-----g~~H~~~~~~~~~e~~~ 109 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY---KEHD-----WVAHAGSVVYETA-----STRHTPQSAYAEGPDII 109 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEE---TTSS-----CCBCTTCEEEECS-----SEEECEEESSSSSSCEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEE---eCCC-----eEECCCeEEEECC-----CCcceeEeCCCCCCCEE
Confidence 455678899988876666678888999999764 2222 2578888765443 123444444 5565
Q ss_pred EEE
Q 013151 181 LLR 183 (448)
Q Consensus 181 l~~ 183 (448)
++.
T Consensus 110 ~~~ 112 (159)
T 3ebr_A 110 TFN 112 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 255
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=24.34 E-value=1.4e+02 Score=28.45 Aligned_cols=70 Identities=3% Similarity=-0.119 Sum_probs=46.2
Q ss_pred cccCCCHHHHHHHHhhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCe---------------------eE
Q 013151 90 LFKGCSSEFINQIVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSE---------------------ET 148 (448)
Q Consensus 90 ~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~---------------------~~ 148 (448)
.|..-+ ..+.-+--.+....+.||..+...=-.+.++++|++|...+-...+++.+ +.
T Consensus 35 ~~~~~~-~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk 113 (476)
T 1fxz_A 35 TWNPNN-KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQK 113 (476)
T ss_dssp ECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCC
T ss_pred eeCCCC-hhhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccce
Confidence 344333 33333334556667899988754445588999999999888776655442 13
Q ss_pred EEEecCCCeeec
Q 013151 149 VSQLQPNSSFGE 160 (448)
Q Consensus 149 ~~~l~~G~~fGe 160 (448)
+..+++||.+--
T Consensus 114 ~~~l~~GDvi~i 125 (476)
T 1fxz_A 114 IYNFREGDLIAV 125 (476)
T ss_dssp EEEECTTEEEEE
T ss_pred EEEEeCCCEEEE
Confidence 678999998753
No 256
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=24.04 E-value=1e+02 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=33.6
Q ss_pred cceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 106 VHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 106 ~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
+....++||..+- +.-....++++|++|.+++.. +|+ ...+.+||++-
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~~---~~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DNN---WIPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SSC---EEEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CCE---EEEeCCCCEEE
Confidence 3556788887653 332345789999999998874 344 45788998764
No 257
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=23.94 E-value=1.3e+02 Score=27.26 Aligned_cols=48 Identities=4% Similarity=0.010 Sum_probs=31.8
Q ss_pred eCCCCeE---EecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 111 FLPGEVI---MEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 111 ~~~g~~i---~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
.+.|... .+......++++|++|.+++.....+|. .....+.+||++-
T Consensus 55 ~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~L~~GD~v~ 105 (350)
T 1juh_A 55 APHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNET-QQTRVLSSGDYGS 105 (350)
T ss_dssp ECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSC-CEEEEEETTCEEE
T ss_pred cCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCc-eEEEEECCCCEEE
Confidence 3444444 3444446789999999999986443443 3456799999764
No 258
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=23.47 E-value=1.2e+02 Score=26.51 Aligned_cols=63 Identities=8% Similarity=0.040 Sum_probs=40.8
Q ss_pred eEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEech
Q 013151 116 VIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRIDK 186 (448)
Q Consensus 116 ~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l~~ 186 (448)
..++ -+..+++|++++|.+.+...+ +|+ ..--.+++|++|--.. +.+ ++=++.++|..+.+.+
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~-~~~V~i~eGemfllP~---gv~--HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE-QGK-HRDVVIRQGEIFLLPA---RVP--HSPQRFANTVGLVVER 106 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTEEEEECT---TCC--EEEEECTTCEEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe-CCc-eeeEEECCCeEEEeCC---CCC--cCCcccCCeEEEEEee
Confidence 5666 667889999999999887654 343 3346789998886443 333 3333355666666554
No 259
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=23.42 E-value=77 Score=23.95 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=21.1
Q ss_pred cCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 124 VDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 124 ~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
..++++|++|.+.+... .+|+ ...+.+|+.+-
T Consensus 59 ~~e~~~vl~G~~~~~~~-~~~~---~~~l~~Gd~~~ 90 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLP-DQGR---TEEVGPGEAIF 90 (145)
T ss_dssp SCEEEEEEEECEEEEEG-GGTE---EEEECTTCEEE
T ss_pred CceEEEEEEeEEEEEEe-ECCE---EEEECCCCEEE
Confidence 44556799999988610 1333 46788898764
No 260
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.84 E-value=86 Score=29.10 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=34.5
Q ss_pred ceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 107 HEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 107 ~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
....++||+.+-..--...++|||++|....+. .+|+ ...+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~---~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGH---KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTE---EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCE---EEEEcCCCEEEE
Confidence 667889998875444455689999999875532 2444 456889988753
No 261
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=22.80 E-value=1.3e+02 Score=24.40 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=34.1
Q ss_pred ceeeeCCCCeE-------EecCC--ccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVI-------MEQGN--VVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i-------~~~g~--~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
....++||... .+.-. ...++++|++|.+.+...+..|+ .....+.+||.+-
T Consensus 70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v~ 130 (190)
T 1x82_A 70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVVY 130 (190)
T ss_dssp EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC-EEEEEECTTCEEE
T ss_pred EEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEEE
Confidence 34467788651 11122 23699999999999886554454 3456799998764
No 262
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=22.48 E-value=1.4e+02 Score=25.93 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=39.6
Q ss_pred HHhhcceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeeec
Q 013151 102 IVIRVHEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFGE 160 (448)
Q Consensus 102 l~~~~~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 160 (448)
-...++...|.||..+= .+--...+-++|++|+..+.. +|+ ...+++||++--
T Consensus 184 ~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l---~~~---~~~V~~GD~i~~ 237 (266)
T 4e2q_A 184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL---GDN---WYPVQAGDVIWM 237 (266)
T ss_dssp CSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE---TTE---EEEEETTCEEEE
T ss_pred cceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE---CCE---EEEecCCCEEEE
Confidence 34567788899999984 566677799999999987763 333 567889987653
No 263
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=21.47 E-value=31 Score=29.16 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHhhhhhceeeEEeCCceEEEechhHHHHHHhhh-hhHHHhhccC
Q 013151 13 LSILDIAGQIAFLVDIIMQFFLAYRDSQTYCLVYKLTRIALRYLKS-SFIIDLLSCL 68 (448)
Q Consensus 13 ~~~~~~~~~~~f~~di~~~f~~~~~~~~~~~~~~~~~~i~~~y~~~-~f~~d~~~~~ 68 (448)
+.++|.+.-++|.+|+++++...- -.++|.++ |-++|++..+
T Consensus 44 l~~~e~~~~~iF~~E~~lri~~~~--------------~~~~y~~~~wni~D~~~v~ 86 (229)
T 4dxw_A 44 IHLLDYGITIFFVIEILIRFIGEK--------------QKADFFKSGWNIFDTVIVA 86 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------------chhHHhcCCcHHHHHHHHH
Confidence 678999999999999999988531 13578888 8889976443
No 264
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=20.87 E-value=4.1e+02 Score=23.00 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=51.7
Q ss_pred hhcceeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEe-cCCCeeecc---cccCCCCcceEEEEeeee
Q 013151 104 IRVHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQL-QPNSSFGEV---SILCNIPQPYTVCICELS 179 (448)
Q Consensus 104 ~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l-~~G~~fGe~---~ll~~~~~~~~~~a~~~~ 179 (448)
..+....+++|+.+-.+-+.-+-..++++|.+.+.. +|. ....+ ...+.|... ++.-.....+++.+.+++
T Consensus 29 ~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~---~g~--~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~ 103 (270)
T 2qjv_A 29 VGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA---ADS--FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDL 103 (270)
T ss_dssp CEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE---TTE--EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSE
T ss_pred eEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE---CCE--EEeccccccccccCCCCcEEEECCCCEEEEEecCCc
Confidence 346667789999988777767778888999998875 443 23332 334666654 333344446788888888
Q ss_pred eEEEech
Q 013151 180 RLLRIDK 186 (448)
Q Consensus 180 ~l~~l~~ 186 (448)
+++....
T Consensus 104 ~~~v~sA 110 (270)
T 2qjv_A 104 ELAVCSA 110 (270)
T ss_dssp EEEEEEE
T ss_pred eEEEEee
Confidence 8776543
No 265
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.86 E-value=1.6e+02 Score=26.77 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=0.0
Q ss_pred cceeeeCCCCeEEecCCccCeEEEEEeeEEEE-EeecCCCCeeEEEEecCCCeeecccccCCCCcceEEEEeeeeeEEEe
Q 013151 106 VHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEE-VGVGEDGSEETVSQLQPNSSFGEVSILCNIPQPYTVCICELSRLLRI 184 (448)
Q Consensus 106 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~-~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~~~~a~~~~~l~~l 184 (448)
+....++||...-..--...++++|++|...+ .. +|+ ...+++||.+---+ +.++.......+++.++.+
T Consensus 102 ~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v---~g~---~~~l~~GD~~~iP~---g~~H~~~n~~~~~~~~l~v 172 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV---DGE---RTPMNEGDFILTPQ---WRWHDHGNPGDEPVIWLDG 172 (354)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEE---TTE---EEECCTTCEEEECT---TSCEEEECCSSSCEEEEEE
T ss_pred EEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEE---CCE---EEEEcCCCEEEECC---CCcEEeEeCCCCCEEEEEE
Q ss_pred chhhHHHHH
Q 013151 185 DKQSFTNIL 193 (448)
Q Consensus 185 ~~~~~~~ll 193 (448)
....+...+
T Consensus 173 ~d~p~~~~l 181 (354)
T 2d40_A 173 LDLPLVNIL 181 (354)
T ss_dssp ECHHHHHHH
T ss_pred ECchhHhhc
No 266
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=20.74 E-value=1.7e+02 Score=25.98 Aligned_cols=47 Identities=17% Similarity=-0.033 Sum_probs=33.3
Q ss_pred ceeeeCCCCeEE-ecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 107 HEEFFLPGEVIM-EQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 107 ~~~~~~~g~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
......||...- +..+...++++|++|.+++.. +|+ ...+.+||++-
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~~---~~~l~~Gd~~~ 96 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE---RYLLISGDYAN 96 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CCE---EEEECCCCEEE
Confidence 344678887653 444437899999999999874 343 36789998765
No 267
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=20.31 E-value=1.4e+02 Score=27.97 Aligned_cols=50 Identities=8% Similarity=0.122 Sum_probs=38.0
Q ss_pred eeeeCCCCeEEecCCccCeEEEEEeeEEEEEeecCCCCeeEEEEecCCCeee
Q 013151 108 EEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGVGEDGSEETVSQLQPNSSFG 159 (448)
Q Consensus 108 ~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 159 (448)
...+.||..+...--.++.+++|++|+..+--.+.++ .....+++||.+-
T Consensus 48 ~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~--~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 48 QIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNN--RKSFNLDEGHALR 97 (418)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC--EEEEEEETTEEEE
T ss_pred EEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCC--EEEEEecCCCEEE
Confidence 4456788887766566889999999999887666643 3467899999884
Done!