BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013152
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/395 (83%), Positives = 360/395 (91%), Gaps = 2/395 (0%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 73
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 74 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 133
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 134 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 193
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGW
Sbjct: 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 251
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
SKYGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct: 252 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 311
Query: 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 376
G+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN
Sbjct: 312 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 371
Query: 377 PKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPSE 411
PKIIE LS+DG+ GQ+I SS DPSSGK+WVSP+E
Sbjct: 372 PKIIEALSVDGASGQHIESSNIDPSSGKSWVSPAE 406
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/375 (84%), Positives = 343/375 (91%), Gaps = 2/375 (0%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGW
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 239
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
SKYGQLGHGD +DHL+P +LEAL SFISQISGGWRHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct: 240 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV 299
Query: 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 376
G+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 377 PKIIEPLSLDGSKGQ 391
PKIIE LS+DG+ GQ
Sbjct: 360 PKIIEALSVDGASGQ 374
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/371 (84%), Positives = 340/371 (91%), Gaps = 2/371 (0%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 2 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 61
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S M+VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 62 TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 121
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT+EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IKMVAAGAEH+ AV EDG+
Sbjct: 122 LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EKM MVACGWRHTISVS SG LY+YGW
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGALYTYGW 239
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
SKYGQLGHGD +DHL+P +LEAL SFISQISGG+RHTMA+TSDGKLYGWGWNKFGQVGV
Sbjct: 240 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV 299
Query: 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 376
G+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN
Sbjct: 300 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 359
Query: 377 PKIIEPLSLDG 387
PKIIE LS+DG
Sbjct: 360 PKIIEALSVDG 370
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 635 bits (1637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/371 (83%), Positives = 333/371 (89%), Gaps = 2/371 (0%)
Query: 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV 76
P R VL+ISAGASHSVALLSG+IVCSWGRGEDGQLGHGDAEDR SPTQLSALDGH+IVSV
Sbjct: 4 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV 63
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHC 136
TCGADHT AYS+S +VYSWGWGDFGRLGHGNSSDLFTPLPIKALH +R+KQIACGDSHC
Sbjct: 64 TCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHC 123
Query: 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE 196
LAVT EGEVQSWGRNQNGQLGLG TEDSLVPQK+QAFEG+ IK VAAGAEH+ AV EDG+
Sbjct: 124 LAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGD 183
Query: 197 LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
LYGWGWGRYGNLGLGDR DRL+PE+V + EK VACGWRHTISVS SG LY+YGW
Sbjct: 184 LYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKXSXVACGWRHTISVSYSGALYTYGW 241
Query: 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316
SKYGQLGHGD +DHL+P +LEAL SFISQISGG RHT A+TSDGKLYGWGWNKFGQVGV
Sbjct: 242 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV 301
Query: 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNS 376
G+N+D CSPVQV+FP DQKVVQ+SCGWRHTLAVTER NVF+WGRGTNGQLG GES DRN
Sbjct: 302 GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNF 361
Query: 377 PKIIEPLSLDG 387
PKIIE LS+DG
Sbjct: 362 PKIIEALSVDG 372
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 9/356 (2%)
Query: 43 WGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102
WG GQLG + PT AL V + G + T + ++Y+ G+G G
Sbjct: 25 WGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI-GGEQTLFAVTADGKLYATGYGAGG 83
Query: 103 RLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160
RLG G + + TP ++++ + +K++A G HCLA++ EGEV SWG ++G+LG G
Sbjct: 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143
Query: 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220
P+ +++ G+ + VAAG HS V G+LY WG GRYG LG D D+L P+
Sbjct: 144 RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPK 203
Query: 221 KVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA 278
V LQ ++V +ACG T+ ++ ++S+G YG+LG G VP ++++
Sbjct: 204 LVEA--LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261
Query: 279 LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ 338
L + ++ G + ++A+T G +Y WG + ++G G + P QV+ +KV+
Sbjct: 262 LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321
Query: 339 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIA 394
I+ G H + TE V++WG GQLG G ++ P+++ +L G K +A
Sbjct: 322 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA--ALQGKKVNRVA 375
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 151/281 (53%), Gaps = 5/281 (1%)
Query: 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT 77
F + +++G H +AL S V SWG EDG+LGHG+ P + +L G E+V V
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165
Query: 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSH 135
G H+ + + +Y+WG G +GRLGH +S D P ++AL RV IAC GD+
Sbjct: 166 AGGAHSACVTAA-GDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQ 224
Query: 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDG 195
L +T + V SWG G+LG G ++ VP K+ + G+ + V G++ SVA+ + G
Sbjct: 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSG 284
Query: 196 ELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYG 255
+Y WG G Y LG G + P +V LQ +K++ +A G H + + G +Y++G
Sbjct: 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQ--GLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Query: 256 WSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA 296
+ GQLG G P + AL+ +++++ G HT+A
Sbjct: 343 DNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 177/335 (52%), Gaps = 8/335 (2%)
Query: 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEI--VS 75
RPV LI G A+ + + + G G G+LG G E +PT L ++ I V+
Sbjct: 53 LRPVQLI-GGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVA 111
Query: 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSH 135
V G H A S S +VYSWG + G+LGHGN S P I++L + V +A G +H
Sbjct: 112 VNSGGKHCLALS-SEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAH 170
Query: 136 CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAE 193
VT G++ +WG+ + G+LG +ED L P+ ++A +G + +A G+ ++ + +
Sbjct: 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230
Query: 194 DGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253
D ++ WG G YG LG G + +P K+ + L +V V CG + +++++ SG +Y+
Sbjct: 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS--LTGLGVVKVECGSQFSVALTKSGAVYT 288
Query: 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313
+G Y +LGHG P Q++ L+ + I+ G H + T DG++Y WG N GQ
Sbjct: 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ 348
Query: 314 VGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLA 348
+G G P V +KV +++CG HTLA
Sbjct: 349 LGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 129/229 (56%), Gaps = 3/229 (1%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA 80
V+ ++AG +HS + + + +WG+G G+LGH D+ED+L P + AL GH +V + CG+
Sbjct: 161 VVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220
Query: 81 -DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
D T V+SWG GD+G+LG G S P+ I +L L V ++ CG +A+
Sbjct: 221 GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVAL 280
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYG 199
T G V +WG+ +LG G+ + P+++Q +G + +A G+ H V EDGE+Y
Sbjct: 281 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 340
Query: 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS 248
WG G LG G N P VA LQ +K+ VACG HT++ S+S
Sbjct: 341 WGDNDEGQLGDGTTNAIQRPRLVAA--LQGKKVNRVACGSAHTLAWSTS 387
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 169/303 (55%), Gaps = 8/303 (2%)
Query: 86 YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEV 145
Y + +Y WG G+LG + + P P +AL +LR Q+ G+ AVT +G++
Sbjct: 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKL 74
Query: 146 QSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWG 203
+ G G+LG+G TE P L++ + V IK VA +G +H +A++ +GE+Y WG
Sbjct: 75 YATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134
Query: 204 RYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLG 263
G LG G+R+ P + + L+ ++V VA G H+ V+++G LY++G +YG+LG
Sbjct: 135 EDGKLGHGNRSPCDRPRVIES--LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLG 192
Query: 264 HGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD 321
H D +D L P +EAL+ + I+ G T+ +T D ++ WG +G++G G + D
Sbjct: 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-D 251
Query: 322 HCS-PVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKII 380
C P+++ VV++ CG + ++A+T+ V++WG+G +LGHG P+ +
Sbjct: 252 GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Query: 381 EPL 383
+ L
Sbjct: 312 QGL 314
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Query: 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTS 299
R + SG +Y +G + GQLG + VP EAL Q+ GG + AVT+
Sbjct: 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTA 70
Query: 300 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTERQNVFS 357
DGKLY G+ G++G+G +P ++ + K V ++ G +H LA++ V+S
Sbjct: 71 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130
Query: 358 WGRGTNGQLGHGESSDRNSPKIIEPL 383
WG +G+LGHG S + P++IE L
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESL 156
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC 78
+ V+ I+ G+ H V V +WG ++GQLG G P ++AL G ++ V C
Sbjct: 317 KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVAC 376
Query: 79 GADHTTAYSES 89
G+ HT A+S S
Sbjct: 377 GSAHTLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 183/364 (50%), Gaps = 36/364 (9%)
Query: 39 IVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97
+V + G+G+ GQLG G+ +R P +S + ++V G HT S+S QVYS+G
Sbjct: 28 LVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSG-QVYSFG 84
Query: 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG--RNQNGQ 155
D G LG S + +P K +V Q++ GDSH A+T +G V WG R+ NG
Sbjct: 85 CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 144
Query: 156 LGL-GTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN 214
+GL + S+VP ++Q V + VA+G +H V + DG+LY G G G LG R
Sbjct: 145 IGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG---RV 199
Query: 215 DRLIPEKVATVDLQR---EKMVMVA--------------CGWRHTISVSSSGRLYSYGWS 257
L + L+R K VM+ CG T ++S G +Y +G S
Sbjct: 200 PELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLS 259
Query: 258 KYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYGWGWNKFGQVG 315
Y QLG + +P L + + S S + SGG HT+ + S+GK Y G ++G++G
Sbjct: 260 NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 319
Query: 316 VGDNVDHCS-PVQV-KFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSD 373
+G+ + S P + + P V ++CG AVT+ VF+WG GTN QLG G+ D
Sbjct: 320 LGEGAEEKSIPTLISRLP---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 376
Query: 374 RNSP 377
SP
Sbjct: 377 AWSP 380
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 172/359 (47%), Gaps = 39/359 (10%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTC 78
V+ AG H+V L V S+G ++G LG + + + P ++ + ++V V+
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSA 118
Query: 79 GADHTTAYSESCMQVYSWG--WGDFGRLGHGNSSDLFTPL-----PIKALHSLRVKQIAC 131
G HT A ++ +V+ WG + G +G L P+ P++ + V ++A
Sbjct: 119 GDSHTAALTDDG-RVFLWGSFRDNNGVIG------LLEPMKKSMVPVQVQLDVPVVKVAS 171
Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTT-----------EDSLVPQ----KLQAFEG- 175
G+ H + +T +G++ + G + GQLG E LVP+ K + G
Sbjct: 172 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231
Query: 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV 235
V + GA + A++ +G +YG+G Y LG IP+ + + + V
Sbjct: 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 291
Query: 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGD-FKDHLVPCQLEALRESFISQISGGWRHT 294
+ G HT+ + S G+ YS G ++YG+LG G+ ++ +P + R +S ++ G
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS--RLPAVSSVACGASVG 349
Query: 295 MAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQV--KFPLDQKVVQISCGWRHTLAVTE 351
AVT DG+++ WG Q+G G + D SPV++ K ++ V+ +S G +HT+ + +
Sbjct: 350 YAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 46/286 (16%)
Query: 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG 79
PV+ +++G H V L + + + G GE GQLG P + G + G
Sbjct: 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR-------VPELFANRGGRQ------G 211
Query: 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
+ C+ + S G GH D F CG A+
Sbjct: 212 LERLLV--PKCVMLKSR-----GSRGHVRFQDAF-----------------CGAYFTFAI 247
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGEL 197
+ EG V +G + QLG TE +PQ L +F+ + V + G H+V + +G+
Sbjct: 248 SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307
Query: 198 YGWGWGRYGNLGLGD-RNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
Y G YG LGLG+ ++ IP ++ + + VACG +V+ GR++++G
Sbjct: 308 YSLGRAEYGRLGLGEGAEEKSIPTLISRL----PAVSSVACGASVGYAVTKDGRVFAWGM 363
Query: 257 SKYGQLGHGDFKDHLVPCQL--EALRESFISQISGGWRHTMAVTSD 300
QLG G +D P ++ + L + +S G +HT+ + D
Sbjct: 364 GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD 300
H + G + + G GQLG G+ L ++ E + +GG HT+ ++
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 77
Query: 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWG- 359
G++Y +G N G +G +V+ V K L +KVVQ+S G HT A+T+ VF WG
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 360 -RGTNGQLG 367
R NG +G
Sbjct: 138 FRDNNGVIG 146
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/364 (34%), Positives = 183/364 (50%), Gaps = 36/364 (9%)
Query: 39 IVCSWGRGEDGQLGHGD-AEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97
+V + G+G+ GQLG G+ +R P +S + ++V G HT S+S QVYS+G
Sbjct: 17 LVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSG-QVYSFG 73
Query: 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG--RNQNGQ 155
D G LG S + +P K +V Q++ GDSH A+T +G V WG R+ NG
Sbjct: 74 CNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGV 133
Query: 156 LGL-GTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN 214
+GL + S+VP ++Q V + VA+G +H V + DG+LY G G G LG R
Sbjct: 134 IGLLEPMKKSMVPVQVQL--DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG---RV 188
Query: 215 DRLIPEKVATVDLQR---EKMVMVA--------------CGWRHTISVSSSGRLYSYGWS 257
L + L+R K VM+ CG T ++S G +Y +G S
Sbjct: 189 PELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLS 248
Query: 258 KYGQLGHGDFKDHLVPCQLEALRESFISQI--SGGWRHTMAVTSDGKLYGWGWNKFGQVG 315
Y QLG + +P L + + S S + SGG HT+ + S+GK Y G ++G++G
Sbjct: 249 NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 308
Query: 316 VGDNVDHCS-PVQV-KFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSD 373
+G+ + S P + + P V ++CG AVT+ VF+WG GTN QLG G+ D
Sbjct: 309 LGEGAEEKSIPTLISRLP---AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 365
Query: 374 RNSP 377
SP
Sbjct: 366 AWSP 369
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 172/359 (47%), Gaps = 39/359 (10%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTC 78
V+ AG H+V L V S+G ++G LG + + + P ++ + ++V V+
Sbjct: 50 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSA 107
Query: 79 GADHTTAYSESCMQVYSWG--WGDFGRLGHGNSSDLFTPL-----PIKALHSLRVKQIAC 131
G HT A ++ +V+ WG + G +G L P+ P++ + V ++A
Sbjct: 108 GDSHTAALTDDG-RVFLWGSFRDNNGVIG------LLEPMKKSMVPVQVQLDVPVVKVAS 160
Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGT-----------TEDSLVPQ----KLQAFEG- 175
G+ H + +T +G++ + G + GQLG E LVP+ K + G
Sbjct: 161 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 220
Query: 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV 235
V + GA + A++ +G +YG+G Y LG IP+ + + + V
Sbjct: 221 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGF 280
Query: 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGD-FKDHLVPCQLEALRESFISQISGGWRHT 294
+ G HT+ + S G+ YS G ++YG+LG G+ ++ +P + R +S ++ G
Sbjct: 281 SGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS--RLPAVSSVACGASVG 338
Query: 295 MAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQV--KFPLDQKVVQISCGWRHTLAVTE 351
AVT DG+++ WG Q+G G + D SPV++ K ++ V+ +S G +HT+ + +
Sbjct: 339 YAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 46/286 (16%)
Query: 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG 79
PV+ +++G H V L + + + G GE GQLG P + G + G
Sbjct: 154 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR-------VPELFANRGGRQ------G 200
Query: 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
+ C+ + S G GH D F CG A+
Sbjct: 201 LERLLV--PKCVMLKSR-----GSRGHVRFQDAF-----------------CGAYFTFAI 236
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV--AAGAEHSVAVAEDGEL 197
+ EG V +G + QLG TE +PQ L +F+ + V + G H+V + +G+
Sbjct: 237 SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 296
Query: 198 YGWGWGRYGNLGLGD-RNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256
Y G YG LGLG+ ++ IP ++ + + VACG +V+ GR++++G
Sbjct: 297 YSLGRAEYGRLGLGEGAEEKSIPTLISRL----PAVSSVACGASVGYAVTKDGRVFAWGM 352
Query: 257 SKYGQLGHGDFKDHLVPCQL--EALRESFISQISGGWRHTMAVTSD 300
QLG G +D P ++ + L + +S G +HT+ + D
Sbjct: 353 GTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 398
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 3/129 (2%)
Query: 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD 300
H + G + + G GQLG G+ L ++ E + +GG HT+ ++
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 66
Query: 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWG- 359
G++Y +G N G +G +V+ V K L +KVVQ+S G HT A+T+ VF WG
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 360 -RGTNGQLG 367
R NG +G
Sbjct: 127 FRDNNGVIG 135
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 176/371 (47%), Gaps = 43/371 (11%)
Query: 34 LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG-HEIVSVTCGADHTTAYSESCMQ 92
+L +VC G G+ GQLG G ED L +LS + G + V ++ G H ++S
Sbjct: 41 VLGNVLVC--GNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKS-GD 95
Query: 93 VYSWGWGDFGRLGHGNSSD------LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQ 146
+YS+G D G LG S D LP KAL I+ GDSH + +G V
Sbjct: 96 IYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC------ISAGDSHSACLLEDGRVF 149
Query: 147 SWG--RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204
+WG R+ +G +GL + P L EG +A+GA+H V + G+++ G
Sbjct: 150 AWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207
Query: 205 YGNLG-LGDRN----------DRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253
G LG L +R+ D L P ++ + + + A + + S + +++
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQL-IITRAKPFEAIWATNYCTFMRESQTQVIWA 266
Query: 254 YGWSKYGQLGH----GDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309
G + + QL H +F L P + E L++ I I+GG HT+ +T+D K G
Sbjct: 267 TGLNNFKQLAHETKGKEFA--LTPIKTE-LKD--IRHIAGGQHHTVILTTDLKCSVVGRP 321
Query: 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHG 369
++G++G+GD D + L +K+V + CG + AVT ++SWG G N QLG G
Sbjct: 322 EYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG 381
Query: 370 ESSDRNSPKII 380
+ D P ++
Sbjct: 382 DGDDELEPIVV 392
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 18/234 (7%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGD-----------AEDRLSPTQLSALDGHE 72
I++GA H V L + V + G E GQLG D L PTQL
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 73 IVSVTCGADHTTAYSESCMQV-YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC 131
++ ++ T ES QV ++ G +F +L H F PIK ++ IA
Sbjct: 244 FEAI-WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT-ELKDIRHIAG 301
Query: 132 GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH--SV 189
G H + +T + + GR + G+LGLG +D V +K + ++ K+V+ G S
Sbjct: 302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD--VVEKPTIVKKLTEKIVSVGCGEVCSY 359
Query: 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTI 243
AV DG+LY WG G LG+GD +D L P V + + Q + M++ + G +H I
Sbjct: 360 AVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAI 413
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 117/268 (43%), Gaps = 24/268 (8%)
Query: 22 LLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD 81
L ISAG SHS LL V +WG D G D T + ++G S+ GAD
Sbjct: 130 LCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD 189
Query: 82 HTTAYSESCMQVYSWGW---GDFGRL--------GHGNSSDLFTPLPIKALHSLRVKQIA 130
H + + +V++ G G GRL G DL P + + + I
Sbjct: 190 HLVILT-TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAI- 247
Query: 131 CGDSHCLAVTVEGEVQ---SWGRNQNGQLGLGT--TEDSLVPQKLQAFEGVSIKMVAAGA 185
++C + E + Q + G N QL T E +L P K + + I+ +A G
Sbjct: 248 WATNYCTFMR-ESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD---IRHIAGGQ 303
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISV 245
H+V + D + G YG LGLGD D + EK V EK+V V CG + +V
Sbjct: 304 HHTVILTTDLKCSVVGRPEYGRLGLGDVKD--VVEKPTIVKKLTEKIVSVGCGEVCSYAV 361
Query: 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVP 273
+ G+LYS+G QLG GD D L P
Sbjct: 362 TIDGKLYSWGSGVNNQLGVGDGDDELEP 389
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 138/329 (41%), Gaps = 40/329 (12%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADH 82
ISAG H++ L + S+G ++G LG +ED S L L G + ++ G H
Sbjct: 80 ISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALC-ISAGDSH 138
Query: 83 TTAYSESCMQVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139
+ E + WG F R HGN + D PI + IA G H + +
Sbjct: 139 SACLLEDG---RVFAWGSF-RDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVIL 194
Query: 140 TVEGEVQSWGRNQNGQLGLGT-----------TEDSLVPQKL-----QAFEGV-SIKMVA 182
T G+V + G + GQLG + D L P +L + FE + +
Sbjct: 195 TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCT 254
Query: 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDR--LIPEKVATVDLQREKMVMVACGWR 240
E V ++ G + L + L P K D++ +A G
Sbjct: 255 FMRESQTQV-----IWATGLNNFKQLAHETKGKEFALTPIKTELKDIRH-----IAGGQH 304
Query: 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKDHL-VPCQLEALRESFISQISGGWRHTMAVTS 299
HT+ +++ + G +YG+LG GD KD + P ++ L E +S + G + AVT
Sbjct: 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTI 363
Query: 300 DGKLYGWGWNKFGQVGVGDNVDHCSPVQV 328
DGKLY WG Q+GVGD D P+ V
Sbjct: 364 DGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM-VAAGAEHSVAVAEDGELY 198
TV G V G GQLGLG ED L ++L G+ + ++AG H++ + + G++Y
Sbjct: 40 TVLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIY 97
Query: 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSK 258
+G G LG D ++ K +DL K + ++ G H+ + GR++++G +
Sbjct: 98 SFGCNDEGALGR-DTSEDGSESKPDLIDLP-GKALCISAGDSHSACLLEDGRVFAWGSFR 155
Query: 259 --YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVG 315
+G +G + P L + + I+ G H + +T+ GK++ G + GQ+G
Sbjct: 156 DSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP 62
++ + G S A+ + SWG G + QLG GD +D L P
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 33/283 (11%)
Query: 21 VLLISAGASHSVALLSGNIVCSWG--RGEDGQLGHGDAEDRL--SPTQLSALDGHEIVSV 76
V+ ++A + S AL S V +WG R +G LG + ++ +P ++ + IV +
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQL 209
Query: 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDL----FTPLPIKALHSLRVKQIACG 132
G DH E M V++WG G +LG P P H VK IA G
Sbjct: 210 APGKDHILFLDEEGM-VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH---VKYIASG 265
Query: 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGT-TED-SLV--PQKLQAFEGVSIKMVAAGAEHS 188
++HC A+T + ++ SWG NQ GQ G+ ED +LV P++L + V I+ +AAG HS
Sbjct: 266 ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHS 325
Query: 189 VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPE--------KVATVDLQRE-----KMVMV 235
+ +++DG+LY G +G+ N +PE K V L + K V
Sbjct: 326 LILSQDGDLYSCGRLDMFEVGIPKDN---LPEYTYKDVHGKARAVPLPTKLNNVPKFKSV 382
Query: 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHL-VPCQLE 277
A G H+++V+ +G YS+G+ + +G G F+D VP +++
Sbjct: 383 AAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 49/315 (15%)
Query: 91 MQVYSWGWGDFGRLGHG---NSSDLFTPL--PIKALHSLRVKQIACGDSHCLAVTVEGEV 145
+ ++ WG G LG G + ++ P P ++ A G H LA+ E V
Sbjct: 29 LDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 146 QSWGRNQNGQLGLGTT-----------------------EDSLVPQKL--QAF----EGV 176
SWG N G LG T+ E P K+ ++F EG
Sbjct: 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGH 148
Query: 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL----IPEKVATVDLQREKM 232
+ +AA S A+ +GE+Y WG R LG D++ P KV T + +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT--FSKYNI 206
Query: 233 VMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG---DFKDHLVPCQLEALRESFISQISG 289
V +A G H + + G ++++G + QLG F+ + + LR + I+
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH--VKYIAS 264
Query: 290 GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH----CSPVQVKFPLDQKVVQISCGWRH 345
G H A+T D KL WG N+FGQ GV ++V+ P ++ P + + I+ G H
Sbjct: 265 GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324
Query: 346 TLAVTERQNVFSWGR 360
+L +++ +++S GR
Sbjct: 325 SLILSQDGDLYSCGR 339
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 61/390 (15%)
Query: 17 PFRP-----VLLISAGASHSVALLSGNIVCSWGRGEDGQLGH--GDAEDRL--------- 60
PF P ++ + G H++AL + V SWG + G LG +A+++L
Sbjct: 60 PFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSS 119
Query: 61 ------------SPTQLS------ALDGHEIVSVTCGADHTTAYSESCMQVYSWGW--GD 100
+P ++ +GH++V + D+ + S +VY+WG +
Sbjct: 120 DDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLA-ATDNMSCALFSNGEVYAWGTFRCN 178
Query: 101 FGRLGHGNSSDLF--TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158
G LG TP + + Q+A G H L + EG V +WG Q QLG
Sbjct: 179 EGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR 238
Query: 159 GTTED-SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLG-DRNDR 216
E L + F +K +A+G H A+ +D +L WG ++G G+ D D
Sbjct: 239 KVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298
Query: 217 LIPEKVATVDLQREKMVM-VACGWRHTISVSSSGRLYSYGWSKYGQLG------------ 263
+ K + L ++ +A G H++ +S G LYS G ++G
Sbjct: 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYK 358
Query: 264 --HGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVD 321
HG + +P +L + + ++ G H++AV +G Y WG+ + VG+G D
Sbjct: 359 DVHGKARAVPLPTKLNNVPK--FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFED 416
Query: 322 HCS-PVQVKFPL--DQKVVQISCGWRHTLA 348
P ++K D ++ + CG + +++
Sbjct: 417 DTEVPTRIKNTATQDHNIILVGCGGQFSVS 446
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 41/248 (16%)
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGD--RNDRLI-PEKVATVDLQREKMVMVACGWRHT 242
+H + +++ WG G LGLG +N + P + K++ A G HT
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 243 ISVSSSGRLYSYGWSKYGQLGH--GDFKDHL---------------------VPCQLEAL 279
+++ ++S+G + G LG + K+ L P ++
Sbjct: 80 LALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIP-- 137
Query: 280 RESF--------ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC----SPVQ 327
RESF + Q++ + A+ S+G++Y WG + + +G D +P +
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWK 197
Query: 328 VKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDG 387
V +VQ++ G H L + E VF+WG G QLG + +R K ++P
Sbjct: 198 VPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPFGL 256
Query: 388 SKGQNIAS 395
+ IAS
Sbjct: 257 RHVKYIAS 264
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG---DNVDHCSPVQVKF-PLDQ-KV 336
S I ++H ++ WG ++G+G N + P F P D+ K+
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKI 69
Query: 337 VQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPK 378
+ + G HTLA+ E NV+SWG G LG S+ + K
Sbjct: 70 ISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLK 111
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169
++L L + A V IA G+ H LA+ +GEV +WG N++GQ + VP +
Sbjct: 49 ANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVPAE 99
Query: 170 LQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229
++ + +AAGA S A+ +DG++ WG D +D TV +
Sbjct: 100 ARS----GVDAIAAGAWASYAL-KDGKVIAWG----------DDSDGQT-----TVPAEA 139
Query: 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG 289
+ V G +T +G + ++G + +GQ VP + +S + ++G
Sbjct: 140 QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQT--------TVPAE----AQSGVDDVAG 187
Query: 290 GWRHTMAVTSDGKLYGWGWNKFGQVGV 316
G H++A+ DGK+ WG N++ Q V
Sbjct: 188 GIFHSLAL-KDGKVIAWGDNRYKQTTV 213
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 55/234 (23%)
Query: 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA 185
V IA G H LA+ G+V WG N NGQL +P Q+ + +AAG
Sbjct: 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQS----GVDAIAAGN 72
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISV 245
HS+A+ +DGE+ WG GN + +P + R +
Sbjct: 73 YHSLAL-KDGEVIAWG----GN----EDGQTTVPAEA-----------------RSGVDA 106
Query: 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG 305
++G SY + GD D EA +S ++ + GG +AV +G +
Sbjct: 107 IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEA--QSGVTALDGGVYTALAV-KNGGVIA 163
Query: 306 WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWG 359
WG N FGQ V P + + +D ++ G H+LA+ + + V +WG
Sbjct: 164 WGDNYFGQTTV--------PAEAQSGVD----DVAGGIFHSLALKDGK-VIAWG 204
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 81/185 (43%), Gaps = 41/185 (22%)
Query: 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA 80
V I+AG HS+AL G ++ WG EDGQ T + A + ++ GA
Sbjct: 65 VDAIAAGNYHSLALKDGEVIA-WGGNEDGQ------------TTVPAEARSGVDAIAAGA 111
Query: 81 DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVT 140
+Y+ +V +W G+ SD T +P +A V + G LAV
Sbjct: 112 --WASYALKDGKVIAW----------GDDSDGQTTVPAEAQSG--VTALDGGVYTALAVK 157
Query: 141 VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200
G V +WG N GQ + VP + Q+ + VA G HS+A+ +DG++ W
Sbjct: 158 -NGGVIAWGDNYFGQ--------TTVPAEAQS----GVDDVAGGIFHSLAL-KDGKVIAW 203
Query: 201 GWGRY 205
G RY
Sbjct: 204 GDNRY 208
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 42/207 (20%)
Query: 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169
++L L + A V IA G+ H LA+ +GEV +WG N++GQ + VP +
Sbjct: 51 ANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQ--------TTVPAE 101
Query: 170 LQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229
++ + +AAGA S A+ +DG++ WG D +D TV +
Sbjct: 102 ARS----GVDAIAAGAWASYAL-KDGKVIAWG----------DDSDGQT-----TVPAEA 141
Query: 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG 289
+ V G +T +G + ++G + +GQ VP + +S + ++G
Sbjct: 142 QSGVTALDGGVYTALAVKNGGVIAWGDNYFGQT--------TVPAE----AQSGVDDVAG 189
Query: 290 GWRHTMAVTSDGKLYGWGWNKFGQVGV 316
G H++A+ DGK+ WG N++ Q V
Sbjct: 190 GIFHSLAL-KDGKVIAWGDNRYKQTTV 215
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 55/234 (23%)
Query: 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA 185
V IA G H LA+ G+V WG N NGQL +P Q+ + +AAG
Sbjct: 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL--------TMPAATQS----GVDAIAAGN 74
Query: 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISV 245
HS+A+ +DGE+ WG GN + +P + R +
Sbjct: 75 YHSLAL-KDGEVIAWG----GN----EDGQTTVPAEA-----------------RSGVDA 108
Query: 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYG 305
++G SY + GD D EA +S ++ + GG +AV +G +
Sbjct: 109 IAAGAWASYALKDGKVIAWGDDSDGQTTVPAEA--QSGVTALDGGVYTALAV-KNGGVIA 165
Query: 306 WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWG 359
WG N FGQ V P + + +D ++ G H+LA+ + + V +WG
Sbjct: 166 WGDNYFGQTTV--------PAEAQSGVD----DVAGGIFHSLALKDGK-VIAWG 206
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 80/182 (43%), Gaps = 41/182 (22%)
Query: 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHT 83
I+AG HS+AL G ++ WG EDGQ T + A + ++ GA
Sbjct: 70 IAAGNYHSLALKDGEVIA-WGGNEDGQ------------TTVPAEARSGVDAIAAGA--W 114
Query: 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143
+Y+ +V +W G+ SD T +P +A V + G LAV G
Sbjct: 115 ASYALKDGKVIAW----------GDDSDGQTTVPAEAQSG--VTALDGGVYTALAVK-NG 161
Query: 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWG 203
V +WG N GQ + VP + Q+ + VA G HS+A+ +DG++ WG
Sbjct: 162 GVIAWGDNYFGQ--------TTVPAEAQS----GVDDVAGGIFHSLAL-KDGKVIAWGDN 208
Query: 204 RY 205
RY
Sbjct: 209 RY 210
>pdb|3PUB|A Chain A, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
pdb|3PUB|B Chain B, Crystal Structure Of The Bombyx Mori Low Molecular Weight
Lipoprotein 7 (Bmlp7)
Length = 251
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 315 GVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDR 374
G D V C PV+ + + +++ R LA+T +V G +G+L G+ D+
Sbjct: 69 GSKDIVRDCFPVEFRLIFAENAIKLMYK-RDGLALTLSNDV----HGNDGRLAFGDGKDK 123
Query: 375 NSPKI 379
SPK+
Sbjct: 124 TSPKV 128
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 383 LSLDGSKGQNIASSKYDPSSGKTWVSPSERYAVVPD 418
L LD SK + +SKYDP+ +T + Y ++PD
Sbjct: 627 LGLDDSKWKCFVNSKYDPAKKETKIFKKPYYQIIPD 662
>pdb|4EFP|A Chain A, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFP|B Chain B, Bombyx Mori Lipoprotein 7 Isolated From Its Natural Source
At 1.33 A Resolution
pdb|4EFQ|A Chain A, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFQ|B Chain B, Bombyx Mori Lipoprotein 7 - Platinum Derivative At 1.94 A
Resolution
pdb|4EFR|A Chain A, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|B Chain B, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|C Chain C, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
pdb|4EFR|D Chain D, Bombyx Mori Lipoprotein 7 (crystal Form Ii) At 2.50 A
Resolution
Length = 239
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 315 GVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDR 374
G D V C PV+ + + +++ R LA+T +V G +G+L G+ D+
Sbjct: 68 GSKDIVRDCFPVEFRLIFAENAIKLMYK-RDGLALTLSNDV----HGNDGRLAFGDGKDK 122
Query: 375 NSPKI 379
SPK+
Sbjct: 123 TSPKV 127
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 61 SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA 120
+P A++ + ++H+T S M V + W +F G+SS LF PI+
Sbjct: 413 NPGIFGAVNNYLYAPDGLSSNHSTG--NSNMTVRNITWSNF--RAEGSSSALFRINPIQN 468
Query: 121 LHSLRVKQIACGDSHCLAV-TVEGEVQSWGRNQNGQ 155
L ++ +K ++ L++ T E + W NG+
Sbjct: 469 LDNISIKNVSIESFEPLSINTTESWMPVWYDLNNGK 504
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 284 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW 343
I +SG + H + DG++ +G N GQ V DH P +Q++ G
Sbjct: 311 IGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVD---DHAGP----------YIQLAAGH 357
Query: 344 RHTLAVTERQNVFSWGRGTNGQL 366
T+ V V WG + L
Sbjct: 358 NFTVTVNTLNQVMFWGDSPDNSL 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,380,717
Number of Sequences: 62578
Number of extensions: 641908
Number of successful extensions: 1564
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 48
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)