Query 013152
Match_columns 448
No_of_seqs 453 out of 2188
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 00:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 8.6E-53 1.9E-57 398.4 29.5 358 28-390 58-449 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 4.8E-47 1E-51 359.4 29.1 327 19-351 104-464 (476)
3 KOG1427 Uncharacterized conser 100.0 1.8E-44 4E-49 320.7 17.8 326 19-352 56-399 (443)
4 KOG1427 Uncharacterized conser 100.0 1.4E-42 3E-47 308.7 19.0 347 36-394 18-387 (443)
5 KOG0783 Uncharacterized conser 100.0 1E-28 2.2E-33 245.2 14.7 304 32-353 136-450 (1267)
6 KOG0783 Uncharacterized conser 99.9 3.1E-26 6.7E-31 227.7 14.9 272 85-361 136-416 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 2.8E-23 6E-28 214.0 22.2 340 20-382 480-870 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 5.2E-23 1.1E-27 212.0 23.8 284 16-319 522-856 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 3E-12 6.4E-17 88.1 4.4 50 300-349 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 8.3E-12 1.8E-16 85.9 4.7 50 248-297 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 5.6E-11 1.2E-15 71.2 3.9 30 284-313 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 8.4E-11 1.8E-15 70.4 4.5 30 21-50 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 1.4E-12 3.1E-17 132.4 -7.6 151 115-312 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 6.8E-12 1.5E-16 127.5 -6.5 174 18-197 13-199 (850)
15 PF11725 AvrE: Pathogenicity f 95.8 0.22 4.7E-06 56.3 14.8 249 72-364 490-780 (1774)
16 PF11725 AvrE: Pathogenicity f 95.8 0.18 3.8E-06 57.0 14.1 291 20-353 490-815 (1774)
17 KOG0315 G-protein beta subunit 94.9 2.9 6.3E-05 38.1 21.7 162 16-202 6-196 (311)
18 KOG3669 Uncharacterized conser 94.3 2.7 5.8E-05 42.7 16.0 108 183-306 190-299 (705)
19 KOG3669 Uncharacterized conser 94.1 7.6 0.00017 39.6 20.0 70 72-148 228-299 (705)
20 KOG4693 Uncharacterized conser 87.2 25 0.00054 32.6 17.0 22 239-262 242-263 (392)
21 KOG4693 Uncharacterized conser 86.4 25 0.00055 32.5 13.0 16 185-201 242-257 (392)
22 KOG0646 WD40 repeat protein [G 85.4 42 0.0009 33.5 17.6 155 125-307 83-245 (476)
23 KOG0943 Predicted ubiquitin-pr 85.2 0.078 1.7E-06 57.4 -3.8 133 175-313 373-509 (3015)
24 COG4257 Vgb Streptogramin lyas 84.5 36 0.00077 31.9 16.2 143 26-200 61-205 (353)
25 COG4257 Vgb Streptogramin lyas 84.3 19 0.00041 33.6 11.3 100 28-149 105-206 (353)
26 PF04841 Vps16_N: Vps16, N-ter 83.3 53 0.0011 33.0 18.6 70 124-201 81-153 (410)
27 KOG0943 Predicted ubiquitin-pr 83.0 0.17 3.8E-06 54.9 -2.4 128 71-204 374-506 (3015)
28 KOG0278 Serine/threonine kinas 81.3 33 0.00072 31.5 11.5 139 125-309 145-287 (334)
29 cd00200 WD40 WD40 domain, foun 80.9 41 0.0009 30.1 33.9 148 18-202 9-164 (289)
30 KOG0291 WD40-repeat-containing 79.5 92 0.002 33.3 24.6 124 17-153 296-424 (893)
31 KOG0278 Serine/threonine kinas 79.5 51 0.0011 30.3 12.9 81 167-263 136-219 (334)
32 PHA03098 kelch-like protein; P 78.7 87 0.0019 32.5 16.9 18 134-152 335-352 (534)
33 PF07569 Hira: TUP1-like enhan 76.9 10 0.00022 34.4 7.2 29 282-310 13-41 (219)
34 KOG1900 Nuclear pore complex, 76.1 69 0.0015 36.4 14.2 216 84-308 93-339 (1311)
35 PHA03098 kelch-like protein; P 75.6 1.1E+02 0.0023 31.9 18.3 16 134-150 382-397 (534)
36 PRK14131 N-acetylneuraminic ac 73.3 99 0.0021 30.5 21.6 18 134-151 131-148 (376)
37 KOG0315 G-protein beta subunit 72.3 81 0.0018 29.1 21.8 61 183-256 134-196 (311)
38 smart00706 TECPR Beta propelle 71.8 9.6 0.00021 23.1 4.0 25 124-148 8-33 (35)
39 PF07569 Hira: TUP1-like enhan 71.2 22 0.00048 32.2 8.0 34 13-46 7-40 (219)
40 PLN02153 epithiospecifier prot 70.9 1E+02 0.0023 29.8 25.0 17 185-202 129-145 (341)
41 KOG0649 WD40 repeat protein [G 70.8 87 0.0019 28.8 11.8 46 176-222 63-109 (325)
42 KOG2106 Uncharacterized conser 68.9 1.4E+02 0.003 30.4 22.2 56 72-147 248-303 (626)
43 TIGR03300 assembly_YfgL outer 68.0 1.3E+02 0.0027 29.6 14.1 57 133-200 320-376 (377)
44 PF04762 IKI3: IKI3 family; I 67.5 2.2E+02 0.0047 32.1 22.1 98 186-322 592-691 (928)
45 KOG1240 Protein kinase contain 67.3 2E+02 0.0044 32.8 15.0 120 125-256 1050-1180(1431)
46 KOG1900 Nuclear pore complex, 66.3 2.5E+02 0.0054 32.3 16.0 214 32-256 93-339 (1311)
47 cd00200 WD40 WD40 domain, foun 65.3 1E+02 0.0022 27.5 27.9 106 72-202 95-206 (289)
48 smart00706 TECPR Beta propelle 64.7 15 0.00034 22.1 3.9 24 177-200 9-33 (35)
49 PHA02713 hypothetical protein; 64.5 1.9E+02 0.0041 30.4 16.3 21 132-152 341-361 (557)
50 TIGR01063 gyrA DNA gyrase, A s 62.7 2.5E+02 0.0053 31.1 23.7 213 26-257 544-769 (800)
51 KOG0291 WD40-repeat-containing 62.6 2.2E+02 0.0049 30.6 30.4 129 242-388 312-446 (893)
52 KOG1274 WD40 repeat protein [G 62.4 2.3E+02 0.005 31.1 14.0 149 184-358 14-165 (933)
53 PLN02153 epithiospecifier prot 61.6 1.6E+02 0.0034 28.5 21.1 17 186-203 244-260 (341)
54 KOG1240 Protein kinase contain 61.2 3E+02 0.0065 31.5 15.9 119 19-150 1049-1180(1431)
55 KOG4441 Proteins containing BT 59.6 1.1E+02 0.0024 32.3 11.5 57 190-256 471-530 (571)
56 KOG0293 WD40 repeat-containing 58.1 2E+02 0.0044 28.6 16.3 26 284-309 443-470 (519)
57 KOG0646 WD40 repeat protein [G 57.9 2.1E+02 0.0046 28.7 19.7 95 20-134 83-185 (476)
58 PHA02713 hypothetical protein; 54.9 2.8E+02 0.006 29.2 15.8 13 139-151 395-407 (557)
59 PRK14131 N-acetylneuraminic ac 51.7 2.5E+02 0.0054 27.7 17.0 17 186-202 131-147 (376)
60 KOG0307 Vesicle coat complex C 51.4 39 0.00085 37.4 6.6 56 334-389 254-321 (1049)
61 TIGR01062 parC_Gneg DNA topois 49.9 3.8E+02 0.0082 29.3 15.9 163 77-263 491-660 (735)
62 PF12341 DUF3639: Protein of u 49.7 49 0.0011 19.0 3.9 25 230-254 2-26 (27)
63 TIGR03548 mutarot_permut cycli 49.5 2.4E+02 0.0052 26.9 13.8 18 240-258 116-133 (323)
64 PF04762 IKI3: IKI3 family; I 49.4 4.3E+02 0.0094 29.8 20.2 28 123-150 426-455 (928)
65 PF06739 SBBP: Beta-propeller 49.3 20 0.00043 22.4 2.5 17 293-309 16-32 (38)
66 PRK05560 DNA gyrase subunit A; 47.5 4.3E+02 0.0093 29.2 23.6 213 26-258 546-773 (805)
67 KOG0293 WD40 repeat-containing 42.9 3.3E+02 0.0072 27.1 10.7 67 283-360 397-469 (519)
68 TIGR03548 mutarot_permut cycli 42.7 3.1E+02 0.0067 26.2 13.4 17 186-203 116-132 (323)
69 PF02239 Cytochrom_D1: Cytochr 41.1 3.6E+02 0.0079 26.5 14.0 158 125-315 28-197 (369)
70 TIGR01063 gyrA DNA gyrase, A s 40.1 5.5E+02 0.012 28.4 22.1 164 78-256 544-717 (800)
71 KOG1408 WD40 repeat protein [F 38.7 5.4E+02 0.012 27.8 15.1 100 24-150 138-248 (1080)
72 KOG4441 Proteins containing BT 37.6 5.1E+02 0.011 27.3 14.3 60 244-308 471-530 (571)
73 PF07250 Glyoxal_oxid_N: Glyox 37.2 3.4E+02 0.0073 25.1 11.8 73 236-310 116-190 (243)
74 PF10168 Nup88: Nuclear pore c 36.4 5.8E+02 0.013 27.8 12.6 121 187-307 34-177 (717)
75 KOG1587 Cytoplasmic dynein int 36.0 5.4E+02 0.012 27.0 14.8 22 128-149 355-376 (555)
76 PHA02790 Kelch-like protein; P 34.9 1.5E+02 0.0033 30.4 7.8 13 33-45 314-326 (480)
77 KOG1034 Transcriptional repres 34.5 1E+02 0.0022 29.6 5.7 57 32-97 323-381 (385)
78 KOG1034 Transcriptional repres 34.3 2.9E+02 0.0062 26.7 8.6 58 85-150 323-382 (385)
79 PRK05560 DNA gyrase subunit A; 33.5 7E+02 0.015 27.6 22.6 216 78-310 546-773 (805)
80 PF13418 Kelch_4: Galactose ox 33.1 50 0.0011 21.4 2.7 17 28-44 3-19 (49)
81 COG5308 NUP170 Nuclear pore co 32.3 4.6E+02 0.01 29.1 10.6 64 83-151 95-160 (1263)
82 PLN03215 ascorbic acid mannose 31.4 2E+02 0.0043 28.4 7.5 60 126-200 162-224 (373)
83 PF07250 Glyoxal_oxid_N: Glyox 30.8 4.3E+02 0.0094 24.4 11.5 71 290-362 118-190 (243)
84 TIGR03300 assembly_YfgL outer 30.3 5.2E+02 0.011 25.1 24.6 56 291-358 320-376 (377)
85 KOG0289 mRNA splicing factor [ 30.2 4.7E+02 0.01 26.3 9.6 107 239-358 349-457 (506)
86 PF02239 Cytochrom_D1: Cytochr 29.9 5.5E+02 0.012 25.3 14.7 156 72-262 28-196 (369)
87 PHA02790 Kelch-like protein; P 29.7 3.8E+02 0.0083 27.4 9.8 13 139-151 315-327 (480)
88 PF01436 NHL: NHL repeat; Int 28.6 1.2E+02 0.0025 17.2 3.4 18 135-152 5-22 (28)
89 PF04841 Vps16_N: Vps16, N-ter 27.3 6.4E+02 0.014 25.2 23.4 196 19-256 81-286 (410)
90 KOG1230 Protein containing rep 25.8 5.7E+02 0.012 25.7 9.3 113 186-307 124-249 (521)
91 PF10168 Nup88: Nuclear pore c 23.4 9.9E+02 0.021 26.1 20.1 78 124-201 85-177 (717)
92 PRK11138 outer membrane biogen 22.3 7.5E+02 0.016 24.3 14.1 136 28-200 256-391 (394)
93 PF03785 Peptidase_C25_C: Pept 21.9 1.5E+02 0.0033 22.1 3.6 34 123-156 15-49 (81)
94 TIGR02658 TTQ_MADH_Hv methylam 21.6 7.7E+02 0.017 24.2 24.5 277 63-362 30-319 (352)
95 PF06433 Me-amine-dh_H: Methyl 21.4 5.3E+02 0.011 25.2 8.2 159 127-308 31-212 (342)
96 PF14517 Tachylectin: Tachylec 21.0 4.7E+02 0.01 23.9 7.4 24 22-45 73-99 (229)
97 PF09081 DUF1921: Domain of un 21.0 97 0.0021 20.3 2.1 18 79-96 33-50 (51)
98 PLN02772 guanylate kinase 20.9 3.6E+02 0.0077 26.9 7.1 63 80-151 26-95 (398)
99 KOG0307 Vesicle coat complex C 20.7 1.5E+02 0.0033 33.1 4.9 34 282-315 254-290 (1049)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=8.6e-53 Score=398.43 Aligned_cols=358 Identities=31% Similarity=0.559 Sum_probs=294.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCc-cCCeeecCC--CCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCc
Q 013152 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDR-LSPTQLSAL--DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRL 104 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~-~~P~~v~~~--~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~l 104 (448)
..|...++.-..||+||+|...|||.+..+.. ..|++.+.. +...|++++||..|+++|++| |+||+||.|..|+|
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~D-g~lyswG~N~~G~L 136 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDGAL 136 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCC-CCEEEeccCccccc
Confidence 45666888999999999999999999987765 889998876 567899999999999999999 99999999999999
Q ss_pred CCCCC----------------CCcccceeecc----cCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCc
Q 013152 105 GHGNS----------------SDLFTPLPIKA----LHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS 164 (448)
Q Consensus 105 G~g~~----------------~~~~~p~~v~~----l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~ 164 (448)
|.... ....+|..++. ....+|++++||++++++|+++|+||+||....+.++.+....+
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 98761 12445666665 23448999999999999999999999999999888888754433
Q ss_pred cc----ceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCc
Q 013152 165 LV----PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR 240 (448)
Q Consensus 165 ~~----p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~ 240 (448)
.. +.++... ...|+++++|.+|.++|+++|++|.||+|..||||.........+..+..+ +.-..|..|+||.+
T Consensus 217 ~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~-f~i~~i~~vacG~~ 294 (476)
T COG5184 217 QKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP-FAIRNIKYVACGKD 294 (476)
T ss_pred ccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCCh-hhhhhhhhcccCcc
Confidence 32 3333322 457999999999999999999999999999999998776665555555332 12235788999999
Q ss_pred eEEEEEcCCCEEEEcCCCCCCCCCCCC----CCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccC
Q 013152 241 HTISVSSSGRLYSYGWSKYGQLGHGDF----KDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGV 316 (448)
Q Consensus 241 hs~~l~~~G~vy~~G~n~~gqlg~~~~----~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~ 316 (448)
|+++|+++|++|+||.|.+|||+.+.. .....|.....+.+..|..|++|..|+++|..+|.||+||.+..+|||.
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~ 374 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGI 374 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccC
Confidence 999999999999999999999999821 1233466666667777999999999999999999999999999999999
Q ss_pred CC--CCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCC-CCCCCCCeEeeeccCCCCce
Q 013152 317 GD--NVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKG 390 (448)
Q Consensus 317 g~--~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~-~~~~~~P~~i~~~~~~g~~~ 390 (448)
.+ +.....|.++. ...++.+++||..|+++.+++|+||+||+|++||||+|. .++...|+.+.....++...
T Consensus 375 ~~~~~~~~~~~~~ls--~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~ 449 (476)
T COG5184 375 QEEITIDVSTPTKLS--VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNI 449 (476)
T ss_pred cccceeecCCccccc--cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCce
Confidence 88 44445555443 336799999999999999999999999999999999997 56788888887654454443
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.8e-47 Score=359.38 Aligned_cols=327 Identities=30% Similarity=0.531 Sum_probs=263.9
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCC----------------CCccCCeeecCCC----CCcEEEEEc
Q 013152 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA----------------EDRLSPTQLSALD----GHEIVSVTC 78 (448)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~----------------~~~~~P~~v~~~~----~~~i~~v~~ 78 (448)
..|++++||..|+++|++||.||+||.|..|+||.... +....|..|+..+ ..++++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 78999999999999999999999999999999998661 1256788887622 347999999
Q ss_pred cCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCccc----ceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCC
Q 013152 79 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFT----PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG 154 (448)
Q Consensus 79 G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~----p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~g 154 (448)
|++++++++++ |+||.||....+.++.+...+... ++|+... ...|+++++|.+|.++|+++|+||.||+|..|
T Consensus 184 g~e~svil~~~-G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTAD-GRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccC-CcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999 999999999999998885544332 5555544 45899999999999999999999999999999
Q ss_pred ccCCCCCCCcccceeeecc-cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----ccceeeeeeeccCC
Q 013152 155 QLGLGTTEDSLVPQKLQAF-EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND----RLIPEKVATVDLQR 229 (448)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~-~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~----~~~p~~v~~~~~~~ 229 (448)
|||....+....+..+..+ .-..|+.|+||.+|+++|+++|++|+||.|.+|||+.++... ...|..... +..
T Consensus 262 qlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~--~~~ 339 (476)
T COG5184 262 QLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQL--LSG 339 (476)
T ss_pred ccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccccccc--CCC
Confidence 9999988766555555432 223478999999999999999999999999999999983211 112222222 124
Q ss_pred CeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCC--CCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEee
Q 013152 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGD--FKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (448)
Q Consensus 230 ~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~--~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG 307 (448)
..|..|++|..|+++|..+|.||+||++..+|||..+ ......|+++.... ++.+++||..|.++.+++|+||.||
T Consensus 340 ~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t~~gsvy~wG 417 (476)
T COG5184 340 VTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIARTDDGSVYSWG 417 (476)
T ss_pred ceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeeccCCceEEec
Confidence 4589999999999999999999999999999999998 44555555555443 3999999999999999999999999
Q ss_pred cCCCCcccCCCCCCc-cCceEeec--CCCCcEEEEEcCCCeeEEEEC
Q 013152 308 WNKFGQVGVGDNVDH-CSPVQVKF--PLDQKVVQISCGWRHTLAVTE 351 (448)
Q Consensus 308 ~n~~GqLG~g~~~~~-~~p~~v~~--~~~~~v~~i~~G~~h~~al~~ 351 (448)
++++||||.++.... ..|+.+.- .....++..-|+...+++...
T Consensus 418 ~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~ 464 (476)
T COG5184 418 WGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEET 464 (476)
T ss_pred CchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEecc
Confidence 999999999876554 55666652 345677777788777766544
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.8e-44 Score=320.69 Aligned_cols=326 Identities=29% Similarity=0.560 Sum_probs=284.7
Q ss_pred CCEEEEeeC--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEE
Q 013152 19 RPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (448)
Q Consensus 19 ~~i~~i~~G--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~w 96 (448)
.+|.-|++| ..|+++|+-+|+.|.||+|..||||+++...+..|+.|+.+....|++.+||.+|+++|+++ |+||.|
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdt-G~v~af 134 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDT-GQVLAF 134 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecC-CcEEEe
Confidence 356666655 67999999999999999999999999998899999999999999999999999999999999 999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCC-------------
Q 013152 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED------------- 163 (448)
Q Consensus 97 G~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~------------- 163 (448)
|+|.+||||.++..+.....++....+..|+.|+||.++++.|+..+.+..+|--.+||||+++...
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred cccccccccccccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 9999999999998655444444445566899999999999999999999999999999999987652
Q ss_pred -cccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceE
Q 013152 164 -SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT 242 (448)
Q Consensus 164 -~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs 242 (448)
+..|..+..+.+..|++++||.+|+++++++++||.||.+.||+||+...++...|+.+..++.++..-..+.||+..+
T Consensus 215 ~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 215 AQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred cCCCccccccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 3456667788899999999999999999999999999999999999999999999999988887777788999999999
Q ss_pred EEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCC--C
Q 013152 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN--V 320 (448)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~--~ 320 (448)
+.+.+-|.+|.||.+... -++...|.++..+....+..+.|+..|.+ +..|..+..||...+|.++-+.+ .
T Consensus 295 l~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qk 367 (443)
T KOG1427|consen 295 LNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQK 367 (443)
T ss_pred eeecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccc
Confidence 999999999999986542 25667789999999888999999998866 55666899999988887654433 3
Q ss_pred CccCceEeecCCCCcEEEEEcCCCeeEEEECC
Q 013152 321 DHCSPVQVKFPLDQKVVQISCGWRHTLAVTER 352 (448)
Q Consensus 321 ~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~ 352 (448)
....|..+..+....|..|+||..|+++|.++
T Consensus 368 ss~~Pk~v~~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 368 SSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccCccccchhcceeccceeeccceEEEEEcc
Confidence 34668888888888999999999999998864
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.4e-42 Score=308.74 Aligned_cols=347 Identities=29% Similarity=0.482 Sum_probs=282.7
Q ss_pred cCCeEEEEeCCCCCccCCCC---CCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCC
Q 013152 36 SGNIVCSWGRGEDGQLGHGD---AEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSS 110 (448)
Q Consensus 36 ~~g~v~~wG~n~~gqLG~~~---~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~ 110 (448)
..|++..+|.-..-+.|..+ ..+...|.++..+.+.+|+-|+.| ..|+++|+-+ |+.|.||.|..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~me-gk~~~wGRNekGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDME-GKCYTWGRNEKGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecc-cceeecccCccCccCccchh
Confidence 34566666655554444433 235788999999998889988877 5699999999 99999999999999999999
Q ss_pred CcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEE
Q 013152 111 DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVA 190 (448)
Q Consensus 111 ~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~ 190 (448)
....|+.|..|...+|++-+||++|+++||++|.||.||.|.+||||.++.........+.......|..|+||.+|++.
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADFTVW 176 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccceEEE
Confidence 99999999999999999999999999999999999999999999999998775444333444445689999999999999
Q ss_pred EecCCcEEEeeCCCCCCCCCCCCCCc--------------cceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcC
Q 013152 191 VAEDGELYGWGWGRYGNLGLGDRNDR--------------LIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 191 lt~~G~vy~wG~n~~gqlg~~~~~~~--------------~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~ 256 (448)
|+..+.+.++|.-.|||||++..... ..|..|..+ ....|++++||.+|+++++++++||+||-
T Consensus 177 l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~--dgvqiv~~acg~nhtvavd~nkrVysWGF 254 (443)
T KOG1427|consen 177 LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL--DGVQIVKVACGTNHTVAVDKNKRVYSWGF 254 (443)
T ss_pred eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccc--cceeeEEEeccCcceeeecCCccEEEecc
Confidence 99999999999999999999865332 122233333 37899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeeecccc--CCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCC
Q 013152 257 SKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQ 334 (448)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 334 (448)
+-||+||+....+...|..++.+. +.--.++.||+..++++.+-|.||.||.+.. +-++...|.++..+...
T Consensus 255 GGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgw 328 (443)
T KOG1427|consen 255 GGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGW 328 (443)
T ss_pred ccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchhhcCCc
Confidence 999999999999999999988664 3445678999999999999999999998864 23445677788778888
Q ss_pred cEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCC--CCCCCCCeEeeeccCCCCceEEee
Q 013152 335 KVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGE--SSDRNSPKIIEPLSLDGSKGQNIA 394 (448)
Q Consensus 335 ~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~--~~~~~~P~~i~~~~~~g~~~~~~~ 394 (448)
++..+.|+..|.+ +..|-.+.+||...+|.++-|. ......|..++.| ++....+++
T Consensus 329 nl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l--~~i~v~~Va 387 (443)
T KOG1427|consen 329 NLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDML--EGIHVMGVA 387 (443)
T ss_pred cCCCcCccceeee-ecccccccccccccccccccCccccccccCccccchh--cceecccee
Confidence 9999999988876 5677889999998877765554 3456778777655 555544443
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=1e-28 Score=245.20 Aligned_cols=304 Identities=27% Similarity=0.404 Sum_probs=233.6
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC--CCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013152 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (448)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~ 109 (448)
.+++.-..||.||.|..-.||++...+...|.+|..+. +.-+.+|+.+..|++|+++. |+||+||.+..|+||+|+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~k-gqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEK-GQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCC-CcEEEeccCCCCccCcCcc
Confidence 34556678999999999999999999999999998775 45578899999999999998 9999999999999999999
Q ss_pred CCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCC-Ccccceeeecc--cCc-cEEEEEeCC
Q 013152 110 SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE-DSLVPQKLQAF--EGV-SIKMVAAGA 185 (448)
Q Consensus 110 ~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~p~~v~~~--~~~-~i~~ia~G~ 185 (448)
...+.|..|+.|.+.+|.+|+....|+++||++|-||+||.|..+|||..+.. ....|.++... .+. .|+-|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999987765 33445555432 222 689999999
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCC-ccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCC
Q 013152 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRND-RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~ 264 (448)
.|+++-+ +-.||+||.| .||||+.++.. ...|..+... ...|..++|...-++++++++.+|++-+ |.|.-.
T Consensus 295 ~hsVawt-~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~---~~~v~~v~a~~~ATVc~~~~~~i~~~ad--y~~~k~ 367 (1267)
T KOG0783|consen 295 SHSVAWT-DTDVYSWGLN-NGQLGISDNISVVTTPRRLAGL---LSPVIHVVATTRATVCLLQNNSIIAFAD--YNQVKL 367 (1267)
T ss_pred ceeeeee-cceEEEeccc-CceecCCCCCceeecchhhccc---ccceEEEEecCccEEEEecCCcEEEEec--ccceec
Confidence 9999999 5579999987 49999877643 4556555332 3579999999999999999999999875 333222
Q ss_pred CCCCCceeeeeecc--c--cCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEE
Q 013152 265 GDFKDHLVPCQLEA--L--RESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 340 (448)
Q Consensus 265 ~~~~~~~~p~~v~~--~--~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~ 340 (448)
....+......|.. + ....+++..+.....++||+-|+||.|-++..- + ......|.++ ..|.+|+
T Consensus 368 ~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----~~c~ftp~r~-----~~isdIa 437 (1267)
T KOG0783|consen 368 PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----TSCKFTPLRI-----FEISDIA 437 (1267)
T ss_pred CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e----eeeeccccee-----eehhhhh
Confidence 11111111111110 0 112355666777788999999999999876421 1 1122334443 2456777
Q ss_pred cCCCeeEEEECCC
Q 013152 341 CGWRHTLAVTERQ 353 (448)
Q Consensus 341 ~G~~h~~al~~~g 353 (448)
--.+..+++++||
T Consensus 438 ~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 438 WTANSLILCTRDG 450 (1267)
T ss_pred hccceEEEEecCc
Confidence 7778899999999
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=3.1e-26 Score=227.74 Aligned_cols=272 Identities=22% Similarity=0.370 Sum_probs=213.1
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCC
Q 013152 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE 162 (448)
Q Consensus 85 ~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~--~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~ 162 (448)
+.+++..+||.||.|....||+|+..+...|..|..+. +.-+.+|..+..|+++|++.|+||++|....|.||+++..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 34444489999999999999999999999999988774 4457889999999999999999999999999999999988
Q ss_pred CcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC-CccceeeeeeeccCCC-eEEEEEecCc
Q 013152 163 DSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-DRLIPEKVATVDLQRE-KMVMVACGWR 240 (448)
Q Consensus 163 ~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~-~~~~p~~v~~~~~~~~-~i~~i~~G~~ 240 (448)
....|+.++.+.+.+|.+|+....|+++||++|.||+||.|..+|||+.+.. ....|.+|......+. .|+.+++|..
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~ 295 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKS 295 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccc
Confidence 8999999999999999999999999999999999999999999999987653 3345555544443343 7999999999
Q ss_pred eEEEEEcCCCEEEEcCCCCCCCCCCCCCC-ceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCC
Q 013152 241 HTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (448)
Q Consensus 241 hs~~l~~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 319 (448)
|+++-+ +-.||+||.| .||||..+... ...|..+.. ....|..++|-..-++++++++.+|++-.-. |.-...+
T Consensus 296 hsVawt-~~~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~--~~k~~~n 370 (1267)
T KOG0783|consen 296 HSVAWT-DTDVYSWGLN-NGQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYN--QVKLPFN 370 (1267)
T ss_pred eeeeee-cceEEEeccc-CceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEeccc--ceecCcc
Confidence 999988 4589999986 59999876533 445654432 3355889999999999999999999976433 2222222
Q ss_pred CCccCceEeecCC----CCcEEEEEcCCCeeEEEECCCCEEEEeCC
Q 013152 320 VDHCSPVQVKFPL----DQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 320 ~~~~~p~~v~~~~----~~~v~~i~~G~~h~~al~~~g~v~~wG~n 361 (448)
.+..+.+.|.--. ...+.+..+...-.++|++-|.||.|=.+
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ 416 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSK 416 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecC
Confidence 2222222222100 12345566666677899999999999754
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.8e-23 Score=214.00 Aligned_cols=340 Identities=22% Similarity=0.317 Sum_probs=223.2
Q ss_pred CEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCC
Q 013152 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG 99 (448)
Q Consensus 20 ~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n 99 (448)
.-+.+-.++...++-+.+|+||--|... .+|.-..-.. -..+... .+|++|+.|-+..+|+.-. |.=|.+--+
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~n--WmEL~l~--~~IVq~SVG~D~~~~~~~A-~~G~I~~v~ 552 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNN--WMELCLP--EPIVQISVGIDTIMFRSGA-GHGWIASVD 552 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCc--eEEecCC--CceEEEEeccchhheeecc-CcceEEecc
Confidence 3345567788888888999999887643 3554333222 2222222 4699999999988887765 443443322
Q ss_pred CCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEE
Q 013152 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIK 179 (448)
Q Consensus 100 ~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~ 179 (448)
+....|. -.....-...+|+.+.+...-.-.++++|++|..|..... .....+.+..+.+..|.
T Consensus 553 D~k~~~~--------~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 553 DKKRNGR--------LRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred Ccccccc--------hhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceee
Confidence 2222221 1111222344777776555445678899999999864311 11123456678888999
Q ss_pred EEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCcc-ceeeeeeec----cC-------CCeEEEEEecCceEEE---
Q 013152 180 MVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRL-IPEKVATVD----LQ-------REKMVMVACGWRHTIS--- 244 (448)
Q Consensus 180 ~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~-~p~~v~~~~----~~-------~~~i~~i~~G~~hs~~--- 244 (448)
+++.|..|.++++++|.||+||.|..+|+|.-...... .|..-...+ .. ....+-..||.....-
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC 696 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC 696 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc
Confidence 99999999999999999999999999999975442221 111100000 00 0112222233221110
Q ss_pred ---EEcCCCEEEEcCCCCCCCCCC--------C------------C-------CCceeeeeec---cccCCcEEEEEcCC
Q 013152 245 ---VSSSGRLYSYGWSKYGQLGHG--------D------------F-------KDHLVPCQLE---ALRESFISQISGGW 291 (448)
Q Consensus 245 ---l~~~G~vy~~G~n~~gqlg~~--------~------------~-------~~~~~p~~v~---~~~~~~i~~I~~G~ 291 (448)
-.-.|.+..+|.++.+.+--+ . + .....|..+. ..-+.++++|+||.
T Consensus 697 ~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~ 776 (3738)
T KOG1428|consen 697 GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGN 776 (3738)
T ss_pred ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccC
Confidence 122455666666555544211 0 0 0111233332 22356799999999
Q ss_pred CeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCC
Q 013152 292 RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGES 371 (448)
Q Consensus 292 ~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~ 371 (448)
.|+++|.+|++||.+|+|.+||||.|+......|+++.+|.+..+++|++|++|++++..||+||.+|.-..|||+..--
T Consensus 777 ~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 777 FHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred ceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997653
Q ss_pred CC---CCCCeEeee
Q 013152 372 SD---RNSPKIIEP 382 (448)
Q Consensus 372 ~~---~~~P~~i~~ 382 (448)
+. -..|.++..
T Consensus 857 e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 857 EKAGWNAIPEKVSG 870 (3738)
T ss_pred cccccccCCCcCCC
Confidence 22 345555543
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-23 Score=212.02 Aligned_cols=284 Identities=23% Similarity=0.310 Sum_probs=190.4
Q ss_pred CCCCCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeE-EEEcCCCE
Q 013152 16 APFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTT-AYSESCMQ 92 (448)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~-~l~~~~g~ 92 (448)
+.+++|++|+.|-...+++. .+|-++.-|+. +.....+++...+..+|+.+.. ..|.+ .+.++ |+
T Consensus 522 ~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~----------k~~~~~Rr~~P~n~rKIv~v~~-s~~VY~~vSen-Gk 589 (3738)
T KOG1428|consen 522 CLPEPIVQISVGIDTIMFRSGAGHGWIASVDDK----------KRNGRLRRLVPSNRRKIVHVCA-SGHVYGYVSEN-GK 589 (3738)
T ss_pred cCCCceEEEEeccchhheeeccCcceEEeccCc----------ccccchhhcCCCCcceeEEEee-eeEEEEEEccC-Ce
Confidence 34589999999999888877 55555544422 1111222222233346777754 44544 45566 99
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcc-cceeee
Q 013152 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL-VPQKLQ 171 (448)
Q Consensus 93 v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~-~p~~v~ 171 (448)
+|..|....- .......+..|.+..|.+++.|..|.++++.+|+||.||-|+.+|+|.-...... .|..-.
T Consensus 590 ifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~ 661 (3738)
T KOG1428|consen 590 IFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSG 661 (3738)
T ss_pred EEeecceeEE--------ecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCccccc
Confidence 9999854321 1123455677888899999999999999999999999999999999974433211 111100
Q ss_pred c-------------ccCccEEEEEeCCCeE---EEE---ecCCcEEEeeCCCCCCCCCC--------CC-----------
Q 013152 172 A-------------FEGVSIKMVAAGAEHS---VAV---AEDGELYGWGWGRYGNLGLG--------DR----------- 213 (448)
Q Consensus 172 ~-------------~~~~~i~~ia~G~~~~---~~l---t~~G~vy~wG~n~~gqlg~~--------~~----------- 213 (448)
. +.+..-+...||.-.. .+. .-.|.+..+|.++.+-+-.+ ..
T Consensus 662 ~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ 741 (3738)
T KOG1428|consen 662 RQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQ 741 (3738)
T ss_pred ceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhhe
Confidence 0 0011111122221111 000 12455666665554322111 00
Q ss_pred --------CCccceeeeeee-ccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcE
Q 013152 214 --------NDRLIPEKVATV-DLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (448)
Q Consensus 214 --------~~~~~p~~v~~~-~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (448)
.....|..+... .....++++|+||..|++.|.+|++||+||+|.+||||+++......|+.+..+.+..|
T Consensus 742 ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~ 821 (3738)
T KOG1428|consen 742 FSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVI 821 (3738)
T ss_pred ecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCce
Confidence 011223333211 12345899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCC
Q 013152 285 SQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDN 319 (448)
Q Consensus 285 ~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 319 (448)
++|++|.+|++++..||.||.+|.-..|||+.+--
T Consensus 822 vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 822 VQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred EEEecCCCceEEEecCCcEEEeccccCccccCccc
Confidence 99999999999999999999999999999998643
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.29 E-value=3e-12 Score=88.13 Aligned_cols=50 Identities=46% Similarity=0.922 Sum_probs=47.0
Q ss_pred CCcEEEeecCCCCccc-CCCCCCccCceEeecCCCCcEEEEEcCCCeeEEE
Q 013152 300 DGKLYGWGWNKFGQVG-VGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV 349 (448)
Q Consensus 300 ~G~vy~wG~n~~GqLG-~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al 349 (448)
||+||+||.|.+|||| .++......|++++.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7888888999999999889999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=8.3e-12 Score=85.88 Aligned_cols=50 Identities=44% Similarity=0.696 Sum_probs=47.5
Q ss_pred CCCEEEEcCCCCCCCC-CCCCCCceeeeeeccccCCcEEEEEcCCCeeEEE
Q 013152 248 SGRLYSYGWSKYGQLG-HGDFKDHLVPCQLEALRESFISQISGGWRHTMAV 297 (448)
Q Consensus 248 ~G~vy~~G~n~~gqlg-~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~l 297 (448)
||+||+||.|.+|||| ..+......|++++.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888889999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.13 E-value=5.6e-11 Score=71.22 Aligned_cols=30 Identities=53% Similarity=0.887 Sum_probs=26.0
Q ss_pred EEEEEcCCCeeEEEeCCCcEEEeecCCCCc
Q 013152 284 ISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 284 i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (448)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.13 E-value=8.4e-11 Score=70.44 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=26.1
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCc
Q 013152 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQ 50 (448)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gq 50 (448)
|++|+||..|+++|++||+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-12 Score=132.42 Aligned_cols=151 Identities=32% Similarity=0.592 Sum_probs=133.4
Q ss_pred ceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecC
Q 013152 115 PLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAED 194 (448)
Q Consensus 115 p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~ 194 (448)
|..+..+.-.++.+++||..|+++++..|+++.||.|.+||+|.+.......|..++.+.+.+..+|++|..|++++..
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 4444555556899999999999999999999999999999999995555555999999999999999999999999885
Q ss_pred CcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeee
Q 013152 195 GELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (448)
Q Consensus 195 G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 274 (448)
|+++++..|.++.+|....+|+|+........|.
T Consensus 84 ----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~ 117 (850)
T KOG0941|consen 84 ----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPL 117 (850)
T ss_pred ----------------------------------------------chhhcchhccccccCCcccccccccccccccccH
Confidence 8999999999999999999999998778888888
Q ss_pred eeccccCCcEEEEEcCCCeeEEEeC-CCcEEEeecCCCC
Q 013152 275 QLEALRESFISQISGGWRHTMAVTS-DGKLYGWGWNKFG 312 (448)
Q Consensus 275 ~v~~~~~~~i~~I~~G~~h~~~lt~-~G~vy~wG~n~~G 312 (448)
.+..+-...+++|+||-.|++++-. -|++|..|.+..|
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 8888888889999999999988754 6899999988876
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.8e-12 Score=127.53 Aligned_cols=174 Identities=27% Similarity=0.459 Sum_probs=136.8
Q ss_pred CCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEc-------CC
Q 013152 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSE-------SC 90 (448)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~-------~~ 90 (448)
..+|++++||..|++++...|.+++||.|.+||+|.+.......|.+++.+.+.+..+|++|..|++++.. +
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e- 91 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDE- 91 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchh-
Confidence 35789999999999999999999999999999999985444444999999999999999999999887766 7
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEc-CCcEEEEECCCCC--ccCCCCCCCcccc
Q 013152 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTV-EGEVQSWGRNQNG--QLGLGTTEDSLVP 167 (448)
Q Consensus 91 g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~-~G~vy~wG~n~~g--qlG~~~~~~~~~p 167 (448)
|.++.+|....+|+|+....+...|..+..+-+..+.+|+|+..|+++.-. -|++|..|.+..| ++-. ...+
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s-----~s~~ 166 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVS-----LSGE 166 (850)
T ss_pred ccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeec-----cchh
Confidence 999999999999999977777778888877778899999999999887654 4999999988876 1110 0011
Q ss_pred eeee---cccCccEEEEEeCCCeEEEEecCCcE
Q 013152 168 QKLQ---AFEGVSIKMVAAGAEHSVAVAEDGEL 197 (448)
Q Consensus 168 ~~v~---~~~~~~i~~ia~G~~~~~~lt~~G~v 197 (448)
.... ......+..+.+|.+.+..|...++-
T Consensus 167 ~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 167 DLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred hhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 0000 01122455678888888888766543
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.82 E-value=0.22 Score=56.34 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=128.5
Q ss_pred cEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecc----------------c---CCCC---EEEE
Q 013152 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA----------------L---HSLR---VKQI 129 (448)
Q Consensus 72 ~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~----------------l---~~~~---i~~I 129 (448)
...+|....+.-++.+.+ |+||.-=..... .. .....+.+... + .+-. +++=
T Consensus 490 ~A~~VgLs~drLFvADse-GkLYsa~l~~~~---~~--~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd 563 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSE-GKLYSADLPAAQ---DN--EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKD 563 (1774)
T ss_pred hhhheeecCCeEEEEeCC-CCEEeccccccc---CC--CcceEeccccccccccccccccceeeccccCCCCeeeEEEec
Confidence 567788877776666666 999974332221 11 11112222111 1 0011 2222
Q ss_pred EecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCC---
Q 013152 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYG--- 206 (448)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~g--- 206 (448)
..|..|+++|+++|.=|.=|+|-...|-..++.-...+.... .-.-+..|..-.++|. +|+|+.|-....+
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~-----~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~ 637 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPA-----PHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWKD 637 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCC-----hHHhhccccccceeec-cceEeeecCcchhhhh
Confidence 456777777777777777777765544333332111110000 0112345667778888 6999999643321
Q ss_pred --C-----C--CCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeec
Q 013152 207 --N-----L--GLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE 277 (448)
Q Consensus 207 --q-----l--g~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~ 277 (448)
. | |.........--+|..+.. ..+--.|+-|.+|.++++.-..-+..| ..++
T Consensus 638 ~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i-~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------~~l~ 698 (1774)
T PF11725_consen 638 AGVKDIDQLKRGLDGNAYVLKDGKVKRLSI-NQEHPSIAHGDNNVFALPQRRNKVELG------------------DALE 698 (1774)
T ss_pred ccCcCHHHHhccccCCceEecCCceeeeec-ccCCCccccCCCcccccccccCCCCCC------------------cccc
Confidence 1 1 1111111111112222111 112223444555555544332222222 2345
Q ss_pred cccCCcEEEEE-cCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-CCcEEEEEcCCCee-EEEECCCC
Q 013152 278 ALRESFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGWRHT-LAVTERQN 354 (448)
Q Consensus 278 ~~~~~~i~~I~-~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i~~G~~h~-~al~~~g~ 354 (448)
.+.+..|+.++ .+.++.++|++.|++-..= . ...|+.+..+. ...|++|++-..|. +|++.+|+
T Consensus 699 Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~ 765 (1774)
T PF11725_consen 699 GLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGE 765 (1774)
T ss_pred CCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCCCCCCcchhheeeccccceeEecCCCc
Confidence 56666677765 4778999999999876532 1 11255544331 36799999988765 68999999
Q ss_pred EEE-----EeCCCCC
Q 013152 355 VFS-----WGRGTNG 364 (448)
Q Consensus 355 v~~-----wG~n~~g 364 (448)
+|. |=.+..+
T Consensus 766 Lf~~~k~~WQ~~~~~ 780 (1774)
T PF11725_consen 766 LFRLPKEAWQGNAEG 780 (1774)
T ss_pred eeecCHHHhhCcccC
Confidence 995 6554444
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.81 E-value=0.18 Score=57.00 Aligned_cols=291 Identities=17% Similarity=0.207 Sum_probs=143.7
Q ss_pred CEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeee--------------cCCC-C-----CcEEEEEcc
Q 013152 20 PVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--------------SALD-G-----HEIVSVTCG 79 (448)
Q Consensus 20 ~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v--------------~~~~-~-----~~i~~v~~G 79 (448)
...+|.....+.++.+++|++|+--... ++..+..-...|... ..|- + .-++.=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~---~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPA---AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccc---ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 5667777777888899999999432211 111111111112111 1110 0 112223345
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcc---cceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCcc
Q 013152 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLF---TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQL 156 (448)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~---~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gql 156 (448)
..|+++|.++ +.=|.-|||-...|=..+..-.. .|.+- ..+-.|+.-.++|. +|+|+.|-....+.-
T Consensus 567 Q~Hs~aLde~-~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~--------~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 567 QRHSHALDEQ-GSQLQPGWNLSDALVLDNTRGLPKPPAPAPH--------EILDLGRAGLVGLQ-DGKIQYWDSTTQCWK 636 (1774)
T ss_pred ceeecccccc-CCccCCCCcccceeEeeccCCCCCCCCCChH--------Hhhccccccceeec-cceEeeecCcchhhh
Confidence 6666666655 66666666654433222221111 11211 12335666678887 699999976543321
Q ss_pred CCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCC-CCCCCCCCCCCc---------cceeeeeeec
Q 013152 157 GLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR-YGNLGLGDRNDR---------LIPEKVATVD 226 (448)
Q Consensus 157 G~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~-~gqlg~~~~~~~---------~~p~~v~~~~ 226 (448)
..+.. .|.++.-|.+....+..+|+|--.--+. +..+-.+..... ..-..+..++
T Consensus 637 ~~~~k---------------d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 637 DAGVK---------------DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred hccCc---------------CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 11110 1222222333333333344333221111 111111111111 1111233333
Q ss_pred cCCCeEEEEE-ecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCe-eEEEeCCCcEE
Q 013152 227 LQREKMVMVA-CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH-TMAVTSDGKLY 304 (448)
Q Consensus 227 ~~~~~i~~i~-~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h-~~~lt~~G~vy 304 (448)
...|..++ .+.++.++|++.|++-..= .-| . ..|.....+.+ .|++|++=..| -+|++.+|+||
T Consensus 702 --~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g-----~----p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf 767 (1774)
T PF11725_consen 702 --DRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG-----R----PVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELF 767 (1774)
T ss_pred --cCcceeEEEEcCCceEEeccCCcccccc--CCC-----C----CccCCCCCCCc-chhheeeccccceeEecCCCcee
Confidence 44555554 4668889999999887642 111 1 22222233433 48889987764 46899999999
Q ss_pred EeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCC
Q 013152 305 GWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQ 353 (448)
Q Consensus 305 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g 353 (448)
.-=.-.+-+.-. .........++.+|.+.+|..+....+|.+.+.-++
T Consensus 768 ~~~k~~WQ~~~~-~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 768 RLPKEAWQGNAE-GDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ecCHHHhhCccc-CCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 743222111101 111124567777888899999999999988877443
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.90 E-value=2.9 Score=38.06 Aligned_cols=162 Identities=19% Similarity=0.346 Sum_probs=81.3
Q ss_pred CCCCCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCC---CC----------------CCCccCCeeecCCCC--Cc
Q 013152 16 APFRPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGH---GD----------------AEDRLSPTQLSALDG--HE 72 (448)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~---~~----------------~~~~~~P~~v~~~~~--~~ 72 (448)
+....+..+++|..|++-+- ..|..+--=.-..+|... .. .-....|.++..+++ .+
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN 85 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN 85 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc
Confidence 34478999999999998664 334333211222222211 00 001233444444432 23
Q ss_pred EEEEE--ccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCceEEEEEcCCcEEEE
Q 013152 73 IVSVT--CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSW 148 (448)
Q Consensus 73 i~~v~--~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~--G~~h~~~lt~~G~vy~w 148 (448)
|..|. |-+.-.+-=.+| |.+-+|-.-. +. -+...+.. ..|..|.. ...+.+.-+.+|+|+.|
T Consensus 86 VtaVgF~~dgrWMyTgseD-gt~kIWdlR~---~~--------~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSED-GTVKIWDLRS---LS--------CQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred eEEEEEeecCeEEEecCCC-ceEEEEeccC---cc--------cchhccCC--CCcceEEecCCcceEEeecCCCcEEEE
Confidence 44443 333333333455 8888885322 11 11111111 23444443 44566777889999999
Q ss_pred ECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCe--EEEEecCCcEEEeeC
Q 013152 149 GRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH--SVAVAEDGELYGWGW 202 (448)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~--~~~lt~~G~vy~wG~ 202 (448)
.-..+ .-.....|.. +..|.+++...+- .++.++.|+.|+|-.
T Consensus 152 Dl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 152 DLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EccCC------ccccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 74332 1112223322 2456666666554 456788999999964
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.29 E-value=2.7 Score=42.72 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=69.9
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC-ceEEEEEcCCCEE-EEcCCCCC
Q 013152 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW-RHTISVSSSGRLY-SYGWSKYG 260 (448)
Q Consensus 183 ~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~-~hs~~l~~~G~vy-~~G~n~~g 260 (448)
.|.....+|..+|++|.- -|.......-.--++.. ...+++.|++|. .-..+++.+|.|| -.|-....
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~---~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqN 259 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVIC---PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQN 259 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecC---CCCccceEeecCcceEEEEeeCCcEEEEecccccC
Confidence 566777889999999852 23322222211111111 122688999999 6778999999975 56766666
Q ss_pred CCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEe
Q 013152 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGW 306 (448)
Q Consensus 261 qlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~w 306 (448)
+.|..= .+...|..... ++.|+.|....-+||.+|.+|.-
T Consensus 260 p~GdsW-kdI~tP~~a~~-----~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 260 PEGDSW-KDIVTPRQALE-----PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCchh-hhccCcccccc-----eEEEEeccceEEEEecCCcEEEE
Confidence 665432 23333333221 88999999999999999999863
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.14 E-value=7.6 Score=39.60 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=49.5
Q ss_pred cEEEEEccC-CeeEEEEcCCCEEE-EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEE
Q 013152 72 EIVSVTCGA-DHTTAYSESCMQVY-SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSW 148 (448)
Q Consensus 72 ~i~~v~~G~-~~~~~l~~~~g~v~-~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~w 148 (448)
++.+|++|. .-..+++.+ |.|| --|-....+.|..-. +..+|.. .+ .++.|+.|....-+||.+|+||.=
T Consensus 228 ~L~qISagPtg~VwAvt~n-G~vf~R~GVsRqNp~GdsWk-dI~tP~~--a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTEN-GAVFYREGVSRQNPEGDSWK-DIVTPRQ--AL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeC-CcEEEEecccccCCCCchhh-hccCccc--cc---ceEEEEeccceEEEEecCCcEEEE
Confidence 588999998 677889998 7665 456555555553322 3333332 21 289999999999999999999864
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.24 E-value=25 Score=32.60 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=15.0
Q ss_pred CceEEEEEcCCCEEEEcCCCCCCC
Q 013152 239 WRHTISVSSSGRLYSYGWSKYGQL 262 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n~~gql 262 (448)
..|+.++- +|++|.||- ..|.|
T Consensus 242 RSHS~fvY-ng~~Y~FGG-Yng~l 263 (392)
T KOG4693|consen 242 RSHSTFVY-NGKMYMFGG-YNGTL 263 (392)
T ss_pred cccceEEE-cceEEEecc-cchhh
Confidence 46777665 799999993 33444
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=86.42 E-value=25 Score=32.53 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.1
Q ss_pred CCeEEEEecCCcEEEee
Q 013152 185 AEHSVAVAEDGELYGWG 201 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG 201 (448)
..|+.++- +|++|.+|
T Consensus 242 RSHS~fvY-ng~~Y~FG 257 (392)
T KOG4693|consen 242 RSHSTFVY-NGKMYMFG 257 (392)
T ss_pred cccceEEE-cceEEEec
Confidence 46777766 89999998
No 22
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=85.45 E-value=42 Score=33.48 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=77.2
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEe--cCCcEEEe
Q 013152 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA--EDGELYGW 200 (448)
Q Consensus 125 ~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt--~~G~vy~w 200 (448)
.+..+++.. .+.++=+..|++|.|--+.---|- ..... -..|..+....+-+++++ +||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~----------v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLN----------VLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHH----------HHHhh--ccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455665544 233344588999999755421110 00011 124555655555555554 78999999
Q ss_pred eCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceE--E--EEEcCCCEEEEcCCCCCCCCCCCCCCceeeeee
Q 013152 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT--I--SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (448)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs--~--~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 276 (448)
-.-+ +-+......|.++..+......|+++.+|..-+ . -..+|..+-+|--.. | ..-..+
T Consensus 151 ~l~~-----lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g----------~LLlti 214 (476)
T KOG0646|consen 151 LLTD-----LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-G----------VLLLTI 214 (476)
T ss_pred EEEe-----ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-c----------eeeEEE
Confidence 5322 112222225555555555556788887776521 1 112233333332111 1 111112
Q ss_pred ccccCCcEEEEEcCCCeeEEEeCCCcEEEee
Q 013152 277 EALRESFISQISGGWRHTMAVTSDGKLYGWG 307 (448)
Q Consensus 277 ~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG 307 (448)
......+...+.-+..+.++=+++|++|..=
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 2222222334556677777788899888754
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.21 E-value=0.078 Score=57.39 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=87.1
Q ss_pred CccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCC--CCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEE
Q 013152 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLG--DRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLY 252 (448)
Q Consensus 175 ~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~--~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy 252 (448)
..++..|.+-.+..++|..+|++|.|-|.+.--+... .......|.. ..+-..+++|+.+++..--.-++|++|+|.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~-a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDA-AFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCcc-ceecccCCeeEEeecCceeeeeeecCCchh
Confidence 3467778777888899999999999999876544431 1122222322 233445789999999998889999999999
Q ss_pred EEcCCCCCCCCCCC-CC-CceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCc
Q 013152 253 SYGWSKYGQLGHGD-FK-DHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 253 ~~G~n~~gqlg~~~-~~-~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (448)
+|=+- .|.+- +. ....-+++. .....+++..|...|.++..++.-+|-||--.+.|
T Consensus 452 sWlDE----cgagV~fkLa~ea~Tkie-ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 452 SWLDE----CGAGVAFKLAHEAQTKIE-EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred hHHhh----hhhhhhhhhhhhhhhhhh-hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 99541 11110 00 011111221 22344666677788999999999999999765544
No 24
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.45 E-value=36 Score=31.87 Aligned_cols=143 Identities=19% Similarity=0.180 Sum_probs=69.8
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCC-CCCCc
Q 013152 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG-DFGRL 104 (448)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n-~~g~l 104 (448)
.+.-|-++...||.|| ++.-..+.+|+=+... -+-.+++.-.+..- |.+++-.| |..|++-.. .-+++
T Consensus 61 G~ap~dvapapdG~VW-ft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~P--------hgiv~gpd-g~~Witd~~~aI~R~ 129 (353)
T COG4257 61 GSAPFDVAPAPDGAVW-FTAQGTGAIGHLDPAT-GEVETYPLGSGASP--------HGIVVGPD-GSAWITDTGLAIGRL 129 (353)
T ss_pred CCCccccccCCCCceE-EecCccccceecCCCC-CceEEEecCCCCCC--------ceEEECCC-CCeeEecCcceeEEe
Confidence 3566888999999999 5544455555522111 01111211222222 44445555 666655322 12223
Q ss_pred CCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCC-CCccCCCCCCCcccceeeecccCccEEEEEe
Q 013152 105 GHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQ-NGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (448)
Q Consensus 105 G~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~-~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 183 (448)
+..+-.-...|.+ .+.+-+.-.+..++.+|+||.-|.+- +|.|--.....+..|.+ --
T Consensus 130 dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG 188 (353)
T COG4257 130 DPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QG 188 (353)
T ss_pred cCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CC
Confidence 2211111112222 22233445678899999999998743 33321111111111111 12
Q ss_pred CCCeEEEEecCCcEEEe
Q 013152 184 GAEHSVAVAEDGELYGW 200 (448)
Q Consensus 184 G~~~~~~lt~~G~vy~w 200 (448)
+.-.-++.|-||+||.-
T Consensus 189 ~gpyGi~atpdGsvwya 205 (353)
T COG4257 189 GGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCcceEECCCCcEEEE
Confidence 34556889999999976
No 25
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.33 E-value=19 Score=33.60 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCceEEEEcCCeEEEEeCC-CCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCC-CCCCcC
Q 013152 28 ASHSVALLSGNIVCSWGRG-EDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWG-DFGRLG 105 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n-~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n-~~g~lG 105 (448)
.-|.+++..||..|..-.. .-++++...-+....|.+. +..-++-.+.+++.. |.||.-|.+ .+|+|-
T Consensus 105 ~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vfD~~-G~lWFt~q~G~yGrLd 174 (353)
T COG4257 105 SPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVFDPW-GNLWFTGQIGAYGRLD 174 (353)
T ss_pred CCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---------ccCCCcccceeeCCC-ccEEEeeccccceecC
Confidence 3488889999999987544 2233333222222223222 223345566777777 999999974 345443
Q ss_pred CCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEE
Q 013152 106 HGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWG 149 (448)
Q Consensus 106 ~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG 149 (448)
.........|.| . -+.-..++.|-||+||.--
T Consensus 175 Pa~~~i~vfpaP-q-----------G~gpyGi~atpdGsvwyas 206 (353)
T COG4257 175 PARNVISVFPAP-Q-----------GGGPYGICATPDGSVWYAS 206 (353)
T ss_pred cccCceeeeccC-C-----------CCCCcceEECCCCcEEEEe
Confidence 222211111222 1 1234568899999999763
No 26
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.33 E-value=53 Score=32.97 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=41.9
Q ss_pred CCEEEEEec-CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeee--cccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013152 124 LRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (448)
Q Consensus 124 ~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~ia~G~~~~~~lt~~G~vy~w 200 (448)
.+|+.+.-. ..+.++|.++|.++.+. -.|.. ....+..+. .....++-.+..+.+-.++||.++++|.-
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 467777653 46789999999988873 22222 111122221 11122344445666778999999999987
Q ss_pred e
Q 013152 201 G 201 (448)
Q Consensus 201 G 201 (448)
-
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 27
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=0.17 Score=54.88 Aligned_cols=128 Identities=18% Similarity=0.263 Sum_probs=85.6
Q ss_pred CcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC--CCcccce-eecccCCCCEEEEEecCceEEEEEcCCcEEE
Q 013152 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS--SDLFTPL-PIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (448)
Q Consensus 71 ~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~--~~~~~p~-~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~ 147 (448)
.+++.|.+-.+..++|..+ |++|.|-+...--|-..-. .+...|. ....+.+.+|+.+++..-..-++|++|+|-+
T Consensus 374 n~~I~I~A~s~el~Alhrk-GelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRK-GELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CeeEEeehhHHHHHHHhhC-CceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 4677777767777888888 9999999876544432111 2222232 2234567899999999999999999999999
Q ss_pred EECCCCCccCCCCCCC--cccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCC
Q 013152 148 WGRNQNGQLGLGTTED--SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGR 204 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~--~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~ 204 (448)
|=+- +|.+.... ...-+++ ...+..+++..|-..|.++..+|.-+|-||---
T Consensus 453 WlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 9431 22221111 1111111 234567788888889999999999999999543
No 28
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=81.34 E-value=33 Score=31.48 Aligned_cols=139 Identities=19% Similarity=0.394 Sum_probs=72.6
Q ss_pred CEEE-EEecCceEEEE-EcCCcEEEEECCCCCccCCCCCCCcccceeeeccc-CccEEEEEeC-CCeEEEEecCCcEEEe
Q 013152 125 RVKQ-IACGDSHCLAV-TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE-GVSIKMVAAG-AEHSVAVAEDGELYGW 200 (448)
Q Consensus 125 ~i~~-I~~G~~h~~~l-t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G-~~~~~~lt~~G~vy~w 200 (448)
.|+. +-|-.+|+++- ++++.|-.|..-.. +.+..++ +..|.++... ..+.+-+..-+.|-.|
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fw 210 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFW 210 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccC--------------cEEEEEecCCCCcceeeccCCCEEEEecCceeEEe
Confidence 4555 46777887766 67899999965331 1111111 1233333322 3344444445567778
Q ss_pred eCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeecccc
Q 013152 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR 280 (448)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~ 280 (448)
-.+.++.| +.+..|..|..-.+..++-+-|+.| +++.+|.+-.+.--.++.
T Consensus 211 daksf~~l-----Ks~k~P~nV~SASL~P~k~~fVaGg--------ed~~~~kfDy~TgeEi~~---------------- 261 (334)
T KOG0278|consen 211 DAKSFGLL-----KSYKMPCNVESASLHPKKEFFVAGG--------EDFKVYKFDYNTGEEIGS---------------- 261 (334)
T ss_pred ccccccce-----eeccCccccccccccCCCceEEecC--------cceEEEEEeccCCceeee----------------
Confidence 76666555 4455666665544434442222222 355666665544333222
Q ss_pred CCcEEEEEcCCCeeEEEeCCCcEEEeecC
Q 013152 281 ESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 281 ~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (448)
..+=.-|.-|++=.+-+|++|+-|+.
T Consensus 262 ---~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 262 ---YNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred ---cccCCCCceEEEEECCCCceeeccCC
Confidence 00112344567777778888887754
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=80.92 E-value=41 Score=30.11 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCCEEEEeeCC--CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCC--eeEEEEcCCCEE
Q 013152 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~--~~~~l~~~~g~v 93 (448)
..+|..++.-. ...++...+|.++.|-..... ....+... ...+..+..-.. +.++...+ |.|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~~i 75 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKGH-TGPVRDVAASADGTYLASGSSD-KTI 75 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEecC-CcceeEEEECCCCCEEEEEcCC-CeE
Confidence 35566666554 334444468999999654321 11111111 112333333322 44444456 999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc-eEEEEEc-CCcEEEEECCCCCccCCCCCCCcccceeee
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-HCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~-h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (448)
+.|-..... ....+.. ....|..+..... ..++... +|.|+.|-....... ..+.
T Consensus 76 ~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~ 132 (289)
T cd00200 76 RLWDLETGE-----------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----------TTLR 132 (289)
T ss_pred EEEEcCccc-----------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----------EEec
Confidence 999644321 1111111 1224666665543 3444444 899999965421110 1111
Q ss_pred cccCccEEEEEeCC-CeEEEEec-CCcEEEeeC
Q 013152 172 AFEGVSIKMVAAGA-EHSVAVAE-DGELYGWGW 202 (448)
Q Consensus 172 ~~~~~~i~~ia~G~-~~~~~lt~-~G~vy~wG~ 202 (448)
.....|..+.... ...++... +|.|+.|-.
T Consensus 133 -~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 133 -GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 1122355555544 23333333 888998864
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.52 E-value=92 Score=33.28 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=68.2
Q ss_pred CCCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCC-ccCCeeecCCCCCcEEEEEccCCeeEEE--EcCCC
Q 013152 17 PFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAY--SESCM 91 (448)
Q Consensus 17 ~~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-~~~P~~v~~~~~~~i~~v~~G~~~~~~l--~~~~g 91 (448)
...=|-+++.+.+ .++++...|.-.++|...-|||..=+=.. ...-.+-..++ ++..++-..+-.++. .+| |
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eD-g 372 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAED-G 372 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCC-C
Confidence 3344555555533 45667777888889988888887532111 00111101111 355555444433333 356 8
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCC
Q 013152 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQN 153 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 153 (448)
+|-+|-....-+ .-+--+.-.+....+...-....+...-||+|-+|.-..+
T Consensus 373 KVKvWn~~SgfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 373 KVKVWNTQSGFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cEEEEeccCceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 888886443211 1122222234456666777777778888999999976553
No 31
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=79.48 E-value=51 Score=30.32 Aligned_cols=81 Identities=11% Similarity=0.288 Sum_probs=42.8
Q ss_pred ceeeecccCccEEE-EEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec-CceEE
Q 013152 167 PQKLQAFEGVSIKM-VAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG-WRHTI 243 (448)
Q Consensus 167 p~~v~~~~~~~i~~-ia~G~~~~~~l-t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-~~hs~ 243 (448)
|..+..-.+ -|+. +-|-.+++++- ++++.|-.|-.- +-+.+..+.++ ..|.+.... ..+.+
T Consensus 136 p~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~sL~~~-s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 136 PKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQSLEFN-SPVTSLEVSQDGRIL 199 (334)
T ss_pred chhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEEEEecC-CCCcceeeccCCCEE
Confidence 444443333 3444 57888888777 788999999632 12222222221 133332222 22334
Q ss_pred EEEcCCCEEEEcCCCCCCCC
Q 013152 244 SVSSSGRLYSYGWSKYGQLG 263 (448)
Q Consensus 244 ~l~~~G~vy~~G~n~~gqlg 263 (448)
.+...+.|-.|-.+.++.|.
T Consensus 200 Tia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred EEecCceeEEecccccccee
Confidence 44445567778777777663
No 32
>PHA03098 kelch-like protein; Provisional
Probab=78.70 E-value=87 Score=32.51 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=12.1
Q ss_pred ceEEEEEcCCcEEEEECCC
Q 013152 134 SHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n~ 152 (448)
.|+++. -+|+||.+|-..
T Consensus 335 ~~~~~~-~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGIY 352 (534)
T ss_pred cceEEE-ECCEEEEEeCCC
Confidence 344444 478999999643
No 33
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.87 E-value=10 Score=34.45 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCeeEEEeCCCcEEEeecCC
Q 013152 282 SFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 282 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~ 310 (448)
.++..+.|-..+.+++|++|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 34778999999999999999999997554
No 34
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.07 E-value=69 Score=36.42 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=101.3
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCC-C-CcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCC-ccCCCC
Q 013152 84 TAYSESCMQVYSWGWGDFGRLGHGNS-S-DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNG-QLGLGT 160 (448)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~g~lG~g~~-~-~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~g-qlG~~~ 160 (448)
+.++-| .+||.|-.++.+++-.-+. + ....-..++.-.+..+-.| .|.++|.+--+|+..|-.... +.+...
T Consensus 93 aWiTiD-n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITID-NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeC-CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 678888 9999999888666532221 1 1111111111112222222 499999999999999843321 111111
Q ss_pred CCCcccceeeecccCccEEEEEeCCCeEEEEe-cCCcEEEeeCCC----CCC-C---CCC-CCCCccceeeeeeeccCCC
Q 013152 161 TEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVA-EDGELYGWGWGR----YGN-L---GLG-DRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt-~~G~vy~wG~n~----~gq-l---g~~-~~~~~~~p~~v~~~~~~~~ 230 (448)
.... ..-...+..|..|.+-.+-=++++ +||.||-.=+.. +++ + -+. ..-....|..+..+....+
T Consensus 168 f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 111223445555554443334443 444444321110 111 0 000 0011233442222113356
Q ss_pred eEEEEEecCceEE--EEEcCCCEEEEcCCCCCCCCCCCCCC---------ceeeeeeccccCCcEEEEE------cCCCe
Q 013152 231 KMVMVACGWRHTI--SVSSSGRLYSYGWSKYGQLGHGDFKD---------HLVPCQLEALRESFISQIS------GGWRH 293 (448)
Q Consensus 231 ~i~~i~~G~~hs~--~l~~~G~vy~~G~n~~gqlg~~~~~~---------~~~p~~v~~~~~~~i~~I~------~G~~h 293 (448)
.|.+|+......+ .+++.|.|-+|=....|+-+.-.... ...-..+....-.+|++|+ .-+-|
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l~ 323 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDLH 323 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCccccccee
Confidence 8999988887654 56788887777655555544321100 0000011111112355554 34568
Q ss_pred eEEEeCCC-cEEEeec
Q 013152 294 TMAVTSDG-KLYGWGW 308 (448)
Q Consensus 294 ~~~lt~~G-~vy~wG~ 308 (448)
.+|+|..| ++|.-|.
T Consensus 324 LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 324 LVAITSTGVRLYFSTS 339 (1311)
T ss_pred EEEEecCCeEEEEecc
Confidence 89999988 4666553
No 35
>PHA03098 kelch-like protein; Provisional
Probab=75.56 E-value=1.1e+02 Score=31.88 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=11.3
Q ss_pred ceEEEEEcCCcEEEEEC
Q 013152 134 SHCLAVTVEGEVQSWGR 150 (448)
Q Consensus 134 ~h~~~lt~~G~vy~wG~ 150 (448)
.|+++ .-+|++|.+|-
T Consensus 382 ~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 382 NPCVV-NVNNLIYVIGG 397 (534)
T ss_pred cceEE-EECCEEEEECC
Confidence 44444 45789999986
No 36
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=73.31 E-value=99 Score=30.49 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.1
Q ss_pred ceEEEEEcCCcEEEEECC
Q 013152 134 SHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 134 ~h~~~lt~~G~vy~wG~n 151 (448)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=72.26 E-value=81 Score=29.07 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=36.9
Q ss_pred eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceE--EEEEcCCCEEEEcC
Q 013152 183 AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHT--ISVSSSGRLYSYGW 256 (448)
Q Consensus 183 ~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs--~~l~~~G~vy~~G~ 256 (448)
-...+-+.=+.+|.|++|-... ..-.....|.. ...|.+++...+-+ ++.++.|++|+|-.
T Consensus 134 pnQteLis~dqsg~irvWDl~~------~~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGE------NSCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CCcceEEeecCCCcEEEEEccC------CccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 3344556667899999996432 11122233322 24566666665544 56788999999975
No 38
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.76 E-value=9.6 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred CCEEEEEecC-ceEEEEEcCCcEEEE
Q 013152 124 LRVKQIACGD-SHCLAVTVEGEVQSW 148 (448)
Q Consensus 124 ~~i~~I~~G~-~h~~~lt~~G~vy~w 148 (448)
..+++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3799999999 999999999999963
No 39
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.23 E-value=22 Score=32.22 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.2
Q ss_pred cCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCC
Q 013152 13 TTAAPFRPVLLISAGASHSVALLSGNIVCSWGRG 46 (448)
Q Consensus 13 ~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n 46 (448)
++.....+++.+.|-..+.++||++|.+|+|=-.
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 4455667888899999999999999999999643
No 40
>PLN02153 epithiospecifier protein
Probab=70.90 E-value=1e+02 Score=29.76 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.1
Q ss_pred CCeEEEEecCCcEEEeeC
Q 013152 185 AEHSVAVAEDGELYGWGW 202 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~ 202 (448)
..|++++. ++++|++|-
T Consensus 129 ~~~~~~~~-~~~iyv~GG 145 (341)
T PLN02153 129 TFHSMASD-ENHVYVFGG 145 (341)
T ss_pred eeeEEEEE-CCEEEEECC
Confidence 35666654 789999984
No 41
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=70.83 E-value=87 Score=28.79 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=26.9
Q ss_pred ccEEEEEeCCCeEEEEecCCcEEEeeCCCCCC-CCCCCCCCccceeee
Q 013152 176 VSIKMVAAGAEHSVAVAEDGELYGWGWGRYGN-LGLGDRNDRLIPEKV 222 (448)
Q Consensus 176 ~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gq-lg~~~~~~~~~p~~v 222 (448)
.+|-.++.-+.|- +..-||+||.|=+++.-. ++....-....|..+
T Consensus 63 gpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 3566666655553 334579999999998655 444333333344443
No 42
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=68.87 E-value=1.4e+02 Score=30.41 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=33.3
Q ss_pred cEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEE
Q 013152 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~ 147 (448)
.|..+..+.+--++--+++|.+++|+-..+. .+ +-+...-|.-+++++..+|.+.+
T Consensus 248 ~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~----------~~----------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITGDSGGNILIWSKGTNR----------IS----------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEEEEEcCCCCEEeecCCceEEEEeCCCce----------EE----------eEeeecCCceEEEEEecCccEee
Confidence 4666666666555555556999999853210 00 11123445567777778887777
No 43
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=68.02 E-value=1.3e+02 Score=29.55 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013152 133 DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (448)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~w 200 (448)
..+.++.+.+|.||++-... |++- ...+.....-...-+.-.++.++.+.||+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 45777788899999986433 2110 001100000011112223567888899999986
No 44
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=67.47 E-value=2.2e+02 Score=32.09 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=59.6
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCC-CCCCCCC
Q 013152 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS-KYGQLGH 264 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n-~~gqlg~ 264 (448)
.+.+.|+++|++|+=+ ..+ ...++++.....|-++-|.+-.+...=.+ ....+
T Consensus 592 ~~~~GLs~~~~Ly~n~------------------~~l------a~~~tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l-- 645 (928)
T PF04762_consen 592 RVLFGLSSNGRLYANS------------------RLL------ASNCTSFAVTDSFLLFTTTQHTLKFVHLNSSVEDL-- 645 (928)
T ss_pred eEEEEECCCCEEEECC------------------EEE------ecCCceEEEEcCEEEEEecCceEEEEECcCchhhc--
Confidence 3688899999999521 111 13788888888898888887777776554 11111
Q ss_pred CCCCCceeeeeecc-ccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCc
Q 013152 265 GDFKDHLVPCQLEA-LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (448)
Q Consensus 265 ~~~~~~~~p~~v~~-~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 322 (448)
..+..... ..+..+..|.-|..-..++-++-+|.. |+-.|+-+..
T Consensus 646 ------~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVL-------QmPRGNLEtI 691 (928)
T PF04762_consen 646 ------EIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVL-------QMPRGNLETI 691 (928)
T ss_pred ------ccccCccccccccccccCccCCEEEEEeCCCceEEE-------EcCCCchhhh
Confidence 11110000 023446777777777777767666665 7777665543
No 45
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=67.28 E-value=2e+02 Score=32.76 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=62.7
Q ss_pred CEEEEEecCce-EEEEE--cCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEE-EeCCCeEEEE-ecCCcEEE
Q 013152 125 RVKQIACGDSH-CLAVT--VEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV-AAGAEHSVAV-AEDGELYG 199 (448)
Q Consensus 125 ~i~~I~~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i-a~G~~~~~~l-t~~G~vy~ 199 (448)
.+.+++....| +++++ +||.|-.|-.-. -.|.+.. ......-...+.++.++ .|++.+.+|+ ++||.|-.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s---~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGS---ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehh--hhcCcce---eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 56688888888 67765 789999996433 2222111 11122222344556665 3555555444 78899888
Q ss_pred eeCCCCCCCCCCCCCCccceeeeeeeccCC-CeEEEEEecC-----ceEEEEEcCCCEEEEcC
Q 013152 200 WGWGRYGNLGLGDRNDRLIPEKVATVDLQR-EKMVMVACGW-----RHTISVSSSGRLYSYGW 256 (448)
Q Consensus 200 wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~-~~i~~i~~G~-----~hs~~l~~~G~vy~~G~ 256 (448)
.+-+.+ ......+..+..++... ..+++.-+-. .-.++.|..+.+..|+-
T Consensus 1125 ~~id~~-------~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHY-------NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEcccc-------ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 875543 11112222221111111 1244432221 12356788888888874
No 46
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.27 E-value=2.5e+02 Score=32.29 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=99.8
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCC--ccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCC-CCcCCCC
Q 013152 32 VALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF-GRLGHGN 108 (448)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~-g~lG~g~ 108 (448)
+=++.|.++|.|-.++.+++-.-+... ...=..+..-.+..+-.| .|.+++.+. -+|+..|--.. .+.+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~-~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATP-VEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEeccc-ceEEEEEEEeccccCcccc
Confidence 458899999999999877764322211 111111111122222222 488888888 89999984322 1111111
Q ss_pred CCCcccceeecccCCCCEEEEEecCceEEEEE-cCCcEEEEE----CCCCCc-cC---C-CCCCCcccceeeec--ccCc
Q 013152 109 SSDLFTPLPIKALHSLRVKQIACGDSHCLAVT-VEGEVQSWG----RNQNGQ-LG---L-GTTEDSLVPQKLQA--FEGV 176 (448)
Q Consensus 109 ~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt-~~G~vy~wG----~n~~gq-lG---~-~~~~~~~~p~~v~~--~~~~ 176 (448)
..+. ..-..++..|..|.+-++-=++++ +||.||-.= ++-+++ +- + ...-....|..+.. ....
T Consensus 168 f~~~----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 168 FNTS----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccc----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1111 011122444555553332222332 455544331 111111 00 0 00112334553322 2355
Q ss_pred cEEEEEeCCCeEE--EEecCCcEEEeeCCCCCCCCCCCCCC---------ccceeeeeeeccCCCeEEEEE------ecC
Q 013152 177 SIKMVAAGAEHSV--AVAEDGELYGWGWGRYGNLGLGDRND---------RLIPEKVATVDLQREKMVMVA------CGW 239 (448)
Q Consensus 177 ~i~~ia~G~~~~~--~lt~~G~vy~wG~n~~gqlg~~~~~~---------~~~p~~v~~~~~~~~~i~~i~------~G~ 239 (448)
.|++|+......+ .+++.|.+-+|-....|+-+.-.... ..... +........|++|+ .-+
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~--~~~~s~f~~IvsI~~l~~~es~~ 321 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKN--PLDDSVFFSIVSISPLSASESND 321 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccc--cCCCcccceeEEecccCcccccc
Confidence 8999998877655 55677887777554444433211000 00000 00111122444443 344
Q ss_pred ceEEEEEcCC-CEEEEcC
Q 013152 240 RHTISVSSSG-RLYSYGW 256 (448)
Q Consensus 240 ~hs~~l~~~G-~vy~~G~ 256 (448)
-|.+++|..| ++|.-|.
T Consensus 322 l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 322 LHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred eeEEEEecCCeEEEEecc
Confidence 6889999888 4776654
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.34 E-value=1e+02 Score=27.47 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=50.8
Q ss_pred cEEEEEccCC-eeEEEEc-CCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-ceEEEEEc-CCcEEE
Q 013152 72 EIVSVTCGAD-HTTAYSE-SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTV-EGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G~~-~~~~l~~-~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~-~h~~~lt~-~G~vy~ 147 (448)
.|..+..... ..++... + |.|+.|-...... ...+. .....|..+.... ...++... +|.|+.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKC-----------LTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEE-----------EEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 3555555443 3333344 5 8999986442111 01111 1122466666554 33344444 899999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeC
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~ 202 (448)
|-......+ ..+. .....|..+....+ ..++...+|.++.|-.
T Consensus 162 ~d~~~~~~~-----------~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 162 WDLRTGKCV-----------ATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEccccccc-----------eeEe-cCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 865421100 0111 11123555544433 4555556888888854
No 48
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=64.74 E-value=15 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.5
Q ss_pred cEEEEEeCC-CeEEEEecCCcEEEe
Q 013152 177 SIKMVAAGA-EHSVAVAEDGELYGW 200 (448)
Q Consensus 177 ~i~~ia~G~-~~~~~lt~~G~vy~w 200 (448)
.+++|++|. +...+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 899999999999964
No 49
>PHA02713 hypothetical protein; Provisional
Probab=64.47 E-value=1.9e+02 Score=30.35 Aligned_cols=21 Identities=5% Similarity=0.166 Sum_probs=13.5
Q ss_pred cCceEEEEEcCCcEEEEECCC
Q 013152 132 GDSHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 132 G~~h~~~lt~~G~vy~wG~n~ 152 (448)
.+.+..+..-+|+||.+|-..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred hhhceeEEEECCEEEEECCcC
Confidence 333334445589999999643
No 50
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=62.74 E-value=2.5e+02 Score=31.06 Aligned_cols=213 Identities=11% Similarity=0.035 Sum_probs=103.3
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEcc-----CCeeEEEEcCCCEEEEEeC
Q 013152 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSWGW 98 (448)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~v~~G-----~~~~~~l~~~~g~v~~wG~ 98 (448)
....+.++++++|++|..=.. +|-.......-.|. .+...++..|+.+.+- ....+++|++ |.+.-.-.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~-GyiKRi~l 619 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN-GVVKKTSL 619 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC-CEEEEEEh
Confidence 455667889999999987321 12111111111221 2333345667766552 2356777777 87776644
Q ss_pred CCCCCcCCCCCCCcccceeecccCCCCEEEEE--ecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCc
Q 013152 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGV 176 (448)
Q Consensus 99 n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 176 (448)
+.+-.... ..-..+..-.+..++.+. ...++.+++|++|++|.+-...-...+....... .+..-++.
T Consensus 620 ~~~~~~~r------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L~~~E 689 (800)
T TIGR01063 620 TEFSNIRS------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKLKNED 689 (800)
T ss_pred HHhhhhcc------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccCCCCC
Confidence 33321100 000001111133455443 3446789999999999997665444443222111 12222355
Q ss_pred cEEEEEe--CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE--ecCceEEEEEcCCCEE
Q 013152 177 SIKMVAA--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISVSSSGRLY 252 (448)
Q Consensus 177 ~i~~ia~--G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~G~~hs~~l~~~G~vy 252 (448)
+|+.+.. ...+.+++|++|.+.-.-...+-....+. .......+......++.+. -..+..++++++|.+.
T Consensus 690 ~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~-----kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~l 764 (800)
T TIGR01063 690 FVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG-----KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLI 764 (800)
T ss_pred EEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC-----cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEE
Confidence 6766654 23467888888877655433221111100 0111111111112343332 2334577888888887
Q ss_pred EEcCC
Q 013152 253 SYGWS 257 (448)
Q Consensus 253 ~~G~n 257 (448)
.+-.+
T Consensus 765 rf~~~ 769 (800)
T TIGR01063 765 RTSVQ 769 (800)
T ss_pred EeeHh
Confidence 76543
No 51
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.61 E-value=2.2e+02 Score=30.56 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=68.1
Q ss_pred EEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeec-cccCCcEEEEEcCCCeeEEE--eCCCcEEEeecCCCCcccCCC
Q 013152 242 TISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE-ALRESFISQISGGWRHTMAV--TSDGKLYGWGWNKFGQVGVGD 318 (448)
Q Consensus 242 s~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~-~~~~~~i~~I~~G~~h~~~l--t~~G~vy~wG~n~~GqLG~g~ 318 (448)
++++...|.-.++|...-|||..-.......-.+.+ .+.. +..++-..+-.++. -+||+|-+|-...-
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------- 382 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSPDGQLIATGAEDGKVKVWNTQSG------- 382 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECCCCcEEEeccCCCcEEEEeccCc-------
Confidence 345567788899999999998765433322222211 1222 44444433333333 35677777754431
Q ss_pred CCCccCceEeecCC---CCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCC
Q 013152 319 NVDHCSPVQVKFPL---DQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGS 388 (448)
Q Consensus 319 ~~~~~~p~~v~~~~---~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~ 388 (448)
.--+.+.. ....+++..-.+..+-..-||.|-+|-...+-.. .+-..+.|.....+.+|.+
T Consensus 383 ------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 383 ------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred ------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCCceeeeEEEEcCC
Confidence 11122221 1234555565566666667999999976654333 1223345555555666633
No 52
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=62.36 E-value=2.3e+02 Score=31.07 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCc-cceeeeeeeccCCCeEEEEEecCceEEEEEcCCC--EEEEcCCCCC
Q 013152 184 GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDR-LIPEKVATVDLQREKMVMVACGWRHTISVSSSGR--LYSYGWSKYG 260 (448)
Q Consensus 184 G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~-~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~--vy~~G~n~~g 260 (448)
+....++++.+|+ |.+-.+..|-.-.-..... ..|..+.. .++.|..|++-..|.+.-++++. +|.++....+
T Consensus 14 ~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 14 GGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred CceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Q ss_pred CCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEE
Q 013152 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS 340 (448)
Q Consensus 261 qlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~ 340 (448)
-+ +..... .-..+++.-+|+..+.|..++.--=..........+.........-.+..
T Consensus 90 ~i---------------------L~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 90 TI---------------------LARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred ce---------------------eeeeec-cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Q ss_pred cCCCeeEEEECCCCEEEE
Q 013152 341 CGWRHTLAVTERQNVFSW 358 (448)
Q Consensus 341 ~G~~h~~al~~~g~v~~w 358 (448)
.-....++.+-||+|++|
T Consensus 148 p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCCCEEEEEecCceEEEE
No 53
>PLN02153 epithiospecifier protein
Probab=61.63 E-value=1.6e+02 Score=28.48 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=11.6
Q ss_pred CeEEEEecCCcEEEeeCC
Q 013152 186 EHSVAVAEDGELYGWGWG 203 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~n 203 (448)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 3555544 6899999953
No 54
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=61.18 E-value=3e+02 Score=31.52 Aligned_cols=119 Identities=23% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCEEEEeeCCCc-eEEEE--cCCeEEEEeCCCCCccCCCCC---CCccCCeeecCCCCCcEEEE-EccCCeeEEEEcCCC
Q 013152 19 RPVLLISAGASH-SVALL--SGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSALDGHEIVSV-TCGADHTTAYSESCM 91 (448)
Q Consensus 19 ~~i~~i~~G~~~-~~~l~--~~g~v~~wG~n~~gqLG~~~~---~~~~~P~~v~~~~~~~i~~v-~~G~~~~~~l~~~~g 91 (448)
..+.++++...| +++++ +||.|-+|-.- -..|.+.. +.+..| .+.++..+ .|++.+.+|+..++|
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~--k~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR--KLEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeeh--hhhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCC
Confidence 445688888888 78877 89999999642 22333221 111222 22334443 355555555555559
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccC-CCCEEEEEec----Cce-EEEEEcCCcEEEEEC
Q 013152 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALH-SLRVKQIACG----DSH-CLAVTVEGEVQSWGR 150 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~-~~~i~~I~~G----~~h-~~~lt~~G~vy~wG~ 150 (448)
.|-..+-+.+.+ ......-..+..+. ...++++-+- ..| .++.|..+.+..|+.
T Consensus 1121 ~v~~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred eEEEEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 999887655311 00111111111111 1134443221 223 466778888999974
No 55
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=59.65 E-value=1.1e+02 Score=32.26 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=32.5
Q ss_pred EEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE---EecCceEEEEEcCCCEEEEcC
Q 013152 190 AVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV---ACGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 190 ~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i---~~G~~hs~~l~~~G~vy~~G~ 256 (448)
+..-++.||+.|-... ......++..++.....+.+ .....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~----------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG----------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC----------CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445899999983221 11111244444334444443 345566666677899999985
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.12 E-value=2e+02 Score=28.56 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEEcCCCeeEEE--eCCCcEEEeecC
Q 013152 284 ISQISGGWRHTMAV--TSDGKLYGWGWN 309 (448)
Q Consensus 284 i~~I~~G~~h~~~l--t~~G~vy~wG~n 309 (448)
|.+-..|.+-.++. .+|++||.|-.-
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEcc
Confidence 45555566656665 579999999754
No 57
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=57.89 E-value=2.1e+02 Score=28.73 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=48.2
Q ss_pred CEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEccCCeeEEEE--cCCCEE
Q 013152 20 PVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGADHTTAYS--ESCMQV 93 (448)
Q Consensus 20 ~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~v~~G~~~~~~l~--~~~g~v 93 (448)
+|..+++-.. +.++=+..|++|+|=-++.-.| ..+.. +.|..+....+-.++++ +| |.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL--------------~v~~aHYQ~ITcL~fs~dgs~iiTgskD-g~V 147 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILL--------------NVLSAHYQSITCLKFSDDGSHIITGSKD-GAV 147 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHH--------------HHHHhhccceeEEEEeCCCcEEEecCCC-ccE
Confidence 3444444332 2233337899999976543222 11111 24555555555555555 45 889
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCC--CCEEEEEecCc
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHS--LRVKQIACGDS 134 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~--~~i~~I~~G~~ 134 (448)
.+|=--+-- ...+...|.|+..+.+ ..|+++.+|..
T Consensus 148 ~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 148 LVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCC
Confidence 988632211 1122225555555443 35777777665
No 58
>PHA02713 hypothetical protein; Provisional
Probab=54.88 E-value=2.8e+02 Score=29.15 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=9.9
Q ss_pred EEcCCcEEEEECC
Q 013152 139 VTVEGEVQSWGRN 151 (448)
Q Consensus 139 lt~~G~vy~wG~n 151 (448)
..-+|+||..|-.
T Consensus 395 ~~~~g~IYviGG~ 407 (557)
T PHA02713 395 CVLDQYIYIIGGR 407 (557)
T ss_pred EEECCEEEEEeCC
Confidence 3458999999854
No 59
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=51.71 E-value=2.5e+02 Score=27.65 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.5
Q ss_pred CeEEEEecCCcEEEeeC
Q 013152 186 EHSVAVAEDGELYGWGW 202 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~ 202 (448)
.|+++...+++||++|-
T Consensus 131 ~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 131 GHVAVSLHNGKAYITGG 147 (376)
T ss_pred ceEEEEeeCCEEEEECC
Confidence 46655546899999984
No 60
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.39 E-value=39 Score=37.40 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=33.9
Q ss_pred CcEEEE-EcCCCeeEEEE--CCCCEEEEeCCCCCCCC---CCC---CC---CCCCCeEeeeccCCCCc
Q 013152 334 QKVVQI-SCGWRHTLAVT--ERQNVFSWGRGTNGQLG---HGE---SS---DRNSPKIIEPLSLDGSK 389 (448)
Q Consensus 334 ~~v~~i-~~G~~h~~al~--~~g~v~~wG~n~~gqLG---~g~---~~---~~~~P~~i~~~~~~g~~ 389 (448)
..|..+ .|..+-.++|+ +|+++++|+-|..-+|| .+. .+ -...|..+..-+++|..
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 345555 46666555565 78999999998855554 321 11 14456666666666654
No 61
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=49.88 E-value=3.8e+02 Score=29.26 Aligned_cols=163 Identities=12% Similarity=0.050 Sum_probs=85.2
Q ss_pred EccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEE--ecCceEEEEEcCCcEEEEECCCCC
Q 013152 77 TCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNG 154 (448)
Q Consensus 77 ~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n~~g 154 (448)
..-...++++|++ |-|-.--...+. +.-+..-.+..++.+. ...++.+++|++|++|.+-.+.-.
T Consensus 491 i~~e~v~VilTk~-G~IKr~~~~~~~------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP 557 (735)
T TIGR01062 491 IPKEPVTIILSKM-GWVRSAKGHDID------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP 557 (735)
T ss_pred ccCcceEEEEecC-CEEEeccccccc------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC
Confidence 3456677888888 877654322221 1122222334455543 344568999999999999765532
Q ss_pred ccCCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeE
Q 013152 155 QLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (448)
Q Consensus 155 qlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (448)
.|.+... ..-..+..-++.+|+.+.+... +.+++|+.|..+-.-.+.+-....+. ..+..+.. +..+
T Consensus 558 -~GR~aGg--pV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaG-------Kgvi~Lk~-~d~l 626 (735)
T TIGR01062 558 -SARGQGE--PLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAG-------KALINLPE-NASV 626 (735)
T ss_pred -cCccCCc--eeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCC-------eEEEEeCC-CCEE
Confidence 2221111 1111122235667887776543 57888888877765433322111100 01111111 2233
Q ss_pred EEE--EecC-ceEEEEEcCCCEEEEcCCCCCCCC
Q 013152 233 VMV--ACGW-RHTISVSSSGRLYSYGWSKYGQLG 263 (448)
Q Consensus 233 ~~i--~~G~-~hs~~l~~~G~vy~~G~n~~gqlg 263 (448)
+.+ ..+. .+.++++++|++..+-.++--+++
T Consensus 627 v~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 627 IAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 321 2233 257789999999988765544443
No 62
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=49.74 E-value=49 Score=19.02 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.8
Q ss_pred CeEEEEEecCceEEEEEcCCCEEEE
Q 013152 230 EKMVMVACGWRHTISVSSSGRLYSY 254 (448)
Q Consensus 230 ~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (448)
+.|..|++|.....+.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5799999999999999988766543
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=49.53 E-value=2.4e+02 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=12.3
Q ss_pred ceEEEEEcCCCEEEEcCCC
Q 013152 240 RHTISVSSSGRLYSYGWSK 258 (448)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~ 258 (448)
.|++++ -+++||++|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455554 468999999643
No 64
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.37 E-value=4.3e+02 Score=29.78 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCEEEEEecCce--EEEEEcCCcEEEEEC
Q 013152 123 SLRVKQIACGDSH--CLAVTVEGEVQSWGR 150 (448)
Q Consensus 123 ~~~i~~I~~G~~h--~~~lt~~G~vy~wG~ 150 (448)
...|.+|+....+ .++++.+|.|+.|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 3478999998877 899999998877753
No 65
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=49.26 E-value=20 Score=22.39 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=14.9
Q ss_pred eeEEEeCCCcEEEeecC
Q 013152 293 HTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 293 h~~~lt~~G~vy~wG~n 309 (448)
+.++++.+|.+|+.|.-
T Consensus 16 ~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEECCCCCEEEEEee
Confidence 67899999999999964
No 66
>PRK05560 DNA gyrase subunit A; Validated
Probab=47.53 E-value=4.3e+02 Score=29.24 Aligned_cols=213 Identities=14% Similarity=0.083 Sum_probs=104.1
Q ss_pred eCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCe--eecCCCCCcEEEEEccC-----CeeEEEEcCCCEEEEEeC
Q 013152 26 AGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPT--QLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSWGW 98 (448)
Q Consensus 26 ~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~--~v~~~~~~~i~~v~~G~-----~~~~~l~~~~g~v~~wG~ 98 (448)
....+.+++++.|++|..=... |-.......-.|. .+...++..|+.+.+-. ...++++++ |.+.---.
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~---iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~-GyiKRi~l 621 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYE---IPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN-GTVKKTSL 621 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhh---CcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC-CEEEEEEh
Confidence 4556678899999999875432 2111111111221 23334456677766643 346777777 87766543
Q ss_pred CCCCCcCCCCCCCcccceeecccCCCCEEEEE--ecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeec-ccC
Q 013152 99 GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--CGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA-FEG 175 (448)
Q Consensus 99 n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~--~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~-~~~ 175 (448)
..+-....+ -...+..-.+..++.+. ...++.+++|++|++|.+-...-...+..... ..+.. -++
T Consensus 622 ~~~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G-----v~~i~L~~~ 690 (805)
T PRK05560 622 SEFSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG-----VRGIKLREG 690 (805)
T ss_pred HHhhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC-----cccccCCCC
Confidence 332211000 00111111233455443 34467999999999999876544333322211 11111 234
Q ss_pred ccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE--EecCceEEEEEcCCC
Q 013152 176 VSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGR 250 (448)
Q Consensus 176 ~~i~~ia~G~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~G~ 250 (448)
.+|+.+..-. .+.+++|+.|.+.-.-.+.+-....+. .......+...+..++.+ ..+.+..++++.+|+
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~-----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~ 765 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG-----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGK 765 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC-----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 5666665432 267888888876655332221111000 011111111112234332 234455778888888
Q ss_pred EEEEcCCC
Q 013152 251 LYSYGWSK 258 (448)
Q Consensus 251 vy~~G~n~ 258 (448)
+..+-.++
T Consensus 766 ~lrf~~~e 773 (805)
T PRK05560 766 LIRTRVSE 773 (805)
T ss_pred EEEEEHHH
Confidence 87765443
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.95 E-value=3.3e+02 Score=27.12 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=35.8
Q ss_pred cEEEEEcCCCeeEEE--eCCCcEEEeecCCCCcccCCCCCCccCceEeec--CCCCcEEEEEcCCCeeEEEE--CCCCEE
Q 013152 283 FISQISGGWRHTMAV--TSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVT--ERQNVF 356 (448)
Q Consensus 283 ~i~~I~~G~~h~~~l--t~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~h~~al~--~~g~v~ 356 (448)
+|.+++...+.-++| ..+.++..|-.-+.-+. .+..- ....-|.+-..|.+..++.+ +|++||
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv-----------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEENKLV-----------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH-----------HHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 466665554444444 45788888875432111 00000 00112444455555566665 899999
Q ss_pred EEeC
Q 013152 357 SWGR 360 (448)
Q Consensus 357 ~wG~ 360 (448)
.|-+
T Consensus 466 IWhr 469 (519)
T KOG0293|consen 466 IWHR 469 (519)
T ss_pred EEEc
Confidence 9975
No 68
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=42.70 E-value=3.1e+02 Score=26.17 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=11.9
Q ss_pred CeEEEEecCCcEEEeeCC
Q 013152 186 EHSVAVAEDGELYGWGWG 203 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~n 203 (448)
.|++++- +++||++|-.
T Consensus 116 ~~~~~~~-~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACYK-DGTLYVGGGN 132 (323)
T ss_pred CceEEEE-CCEEEEEeCc
Confidence 4555544 7899999853
No 69
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=41.11 E-value=3.6e+02 Score=26.54 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=72.0
Q ss_pred CEEEEEecCc-eE-EEEEcCCc-EEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC-CeEEEEecCCcEEEe
Q 013152 125 RVKQIACGDS-HC-LAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-EHSVAVAEDGELYGW 200 (448)
Q Consensus 125 ~i~~I~~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-~~~~~lt~~G~vy~w 200 (448)
.+..|..|.. |. ++.+.||+ +|..++. +.+ ..+.....+.+..|..|. -+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 4566766543 55 45677786 7776532 222 234444455677787664 567888999986555
Q ss_pred eCCCCCCCCCCCCCCccceeeeeeec----cCCCeEEEEEecCc---eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceee
Q 013152 201 GWGRYGNLGLGDRNDRLIPEKVATVD----LQREKMVMVACGWR---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVP 273 (448)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~----~~~~~i~~i~~G~~---hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p 273 (448)
++...+++-.-+......-..++... ....++..|.+... +.+.+.+.+++|.--.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 54333444332222211111121111 01235555544322 4556677788887632111 01
Q ss_pred eeeccccCCcEEEEEcC-CCeeEEEeCCCcEEEeecCCCCccc
Q 013152 274 CQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVG 315 (448)
Q Consensus 274 ~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~GqLG 315 (448)
..++.+..| .-|=.+++.+|+.|.-+.|....++
T Consensus 163 --------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 163 --------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred --------cceeeecccccccccccCcccceeeecccccceeE
Confidence 113334333 3356778888877766655544443
No 70
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=40.14 E-value=5.5e+02 Score=28.39 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=82.7
Q ss_pred ccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CceEEEEEcCCcEEEEECCC
Q 013152 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G-----~~h~~~lt~~G~vy~wG~n~ 152 (448)
...++.+++|+. |++|..-...--..+..... ......+....+.+|+.+.+- ....+++|.+|.+--.-.+.
T Consensus 544 ~t~d~LllfTs~-Grv~~l~~~~IP~~~r~~~G-~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 544 STHDYLLFFTNR-GKVYWLKVYQIPEASRTAKG-KPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred cCCCeEEEEeCC-CcEEEEEhhhCcCCCcCCCC-cCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 345557777777 99999843222121111000 000011233346677776652 23578889999877664333
Q ss_pred CCccCCCCCCCccccee-eecccCccEEEE--EeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCC
Q 013152 153 NGQLGLGTTEDSLVPQK-LQAFEGVSIKMV--AAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (448)
Q Consensus 153 ~gqlG~~~~~~~~~p~~-v~~~~~~~i~~i--a~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (448)
+-.... .... +..-++..++.+ +...++.+++|++|++|.+-...--..+.... ...+..+. .+
T Consensus 622 ~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~-----Gv~~i~L~-~~ 688 (800)
T TIGR01063 622 FSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAAR-----GVRGIKLK-NE 688 (800)
T ss_pred hhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCC-----CeecccCC-CC
Confidence 211100 0000 000112334443 33445789999999999886655433332221 11111111 24
Q ss_pred CeEEEEEec--CceEEEEEcCCCEEEEcC
Q 013152 230 EKMVMVACG--WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 230 ~~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (448)
++|+.+.+- ..+.++++++|.+.-.-.
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l 717 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTSI 717 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEEH
Confidence 566666543 335778888887766543
No 71
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=38.67 E-value=5.4e+02 Score=27.80 Aligned_cols=100 Identities=20% Similarity=0.368 Sum_probs=62.4
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCC
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGR 103 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~ 103 (448)
++.|..|-+++. ||.|-.|..+.- .+| ..+|..|+...+.++++|.-+-.|-.|-...
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~as-----------nki----ss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~--- 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGAS-----------NKI----SSVVSAVAFSEDGSYFVTSGNRHVKLWYLQI--- 195 (1080)
T ss_pred EeeccccceEEE----hhhhhhcccccc-----------ccc----ceeEEEEEEccCCceeeeeeeeeEEEEEeec---
Confidence 456777777773 666776654321 111 1347778888888888887645666664211
Q ss_pred cCCCCCCCcccceeec-------ccCCCCEEEEEecCc----eEEEEEcCCcEEEEEC
Q 013152 104 LGHGNSSDLFTPLPIK-------ALHSLRVKQIACGDS----HCLAVTVEGEVQSWGR 150 (448)
Q Consensus 104 lG~g~~~~~~~p~~v~-------~l~~~~i~~I~~G~~----h~~~lt~~G~vy~wG~ 150 (448)
+ .....|.|+. .+....+..|+||.. .++++|..|.+.-|-+
T Consensus 196 -~----~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 196 -Q----SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred -c----ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeech
Confidence 1 1222343333 234456888999987 8999999999987753
No 72
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=37.63 E-value=5.1e+02 Score=27.29 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=30.1
Q ss_pred EEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeec
Q 013152 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGW 308 (448)
Q Consensus 244 ~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~ 308 (448)
+..-++.+|+.|-... +..... .....|..-+- ..+..+.....+.-+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~~-VE~ydp~~~~W---~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALSS-VERYDPETNQW---TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccce-EEEEcCCCCce---eEcccCccccccccEEEECCEEEEEec
Confidence 4445889999995433 111100 01111111100 112224445666666777889999984
No 73
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=37.23 E-value=3.4e+02 Score=25.06 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=37.8
Q ss_pred EecCceEEEEEcCCCEEEEcCCCCCCCCCCCC-CCceeeeeeccccCCcEE-EEEcCCCeeEEEeCCCcEEEeecCC
Q 013152 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF-KDHLVPCQLEALRESFIS-QISGGWRHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 236 ~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~-~~~~~p~~v~~~~~~~i~-~I~~G~~h~~~lt~~G~vy~wG~n~ 310 (448)
.--++-+..+..||+|++.|-....-...-.. .....+..+..+.. .. ....-.+=.+.|.-+|+||.|+.+.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~--~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ--TSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh--hhccCccccCceEEEcCCCCEEEEEcCC
Confidence 34567888899999999998544110000000 00011111112211 11 1122344457788899999999764
No 74
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.41 E-value=5.8e+02 Score=27.82 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=60.8
Q ss_pred eEEEEecCCcEEEeeCCCCCCCCC-------CCCCC-ccceeeeeeeccCCCeEEEEEecCceE-EEEEcCCCEEE----
Q 013152 187 HSVAVAEDGELYGWGWGRYGNLGL-------GDRND-RLIPEKVATVDLQREKMVMVACGWRHT-ISVSSSGRLYS---- 253 (448)
Q Consensus 187 ~~~~lt~~G~vy~wG~n~~gqlg~-------~~~~~-~~~p~~v~~~~~~~~~i~~i~~G~~hs-~~l~~~G~vy~---- 253 (448)
..++...++++|+|-.+...-+-. ..... .....++.........|..|....... ++|.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 445555578999997666432211 00000 011111211122234666666554332 44443333332
Q ss_pred --EcCCCCCCCCCCCCCCceeeeeecccc---CCcEEEEE-----cCCCeeEEEeCCCcEEEee
Q 013152 254 --YGWSKYGQLGHGDFKDHLVPCQLEALR---ESFISQIS-----GGWRHTMAVTSDGKLYGWG 307 (448)
Q Consensus 254 --~G~n~~gqlg~~~~~~~~~p~~v~~~~---~~~i~~I~-----~G~~h~~~lt~~G~vy~wG 307 (448)
||.+.+-+.|.........|.--..+. ...|.++. ..+.|-++||+|+.+-.+-
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 776655555554444444444433332 23466664 3478999999999765544
No 75
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=35.98 E-value=5.4e+02 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=16.8
Q ss_pred EEEecCceEEEEEcCCcEEEEE
Q 013152 128 QIACGDSHCLAVTVEGEVQSWG 149 (448)
Q Consensus 128 ~I~~G~~h~~~lt~~G~vy~wG 149 (448)
....-..|.++-|+.|.||..-
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEe
Confidence 3344568899999999999843
No 76
>PHA02790 Kelch-like protein; Provisional
Probab=34.92 E-value=1.5e+02 Score=30.41 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=9.9
Q ss_pred EEEcCCeEEEEeC
Q 013152 33 ALLSGNIVCSWGR 45 (448)
Q Consensus 33 ~l~~~g~v~~wG~ 45 (448)
+..-+|++|+-|-
T Consensus 314 ~v~~~~~iYviGG 326 (480)
T PHA02790 314 GVPANNKLYVVGG 326 (480)
T ss_pred EEEECCEEEEECC
Confidence 3456899999985
No 77
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.47 E-value=1e+02 Score=29.62 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=38.7
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCC--eeEEEEcCCCEEEEEe
Q 013152 32 VALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQVYSWG 97 (448)
Q Consensus 32 ~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~--~~~~l~~~~g~v~~wG 97 (448)
++....|+||+|--. ..++...++......+..|+|.+...+ ..++++++ +.||-|-
T Consensus 323 a~gnq~g~v~vwdL~--------~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd-~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLD--------NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD-GTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECC--------CCCCccCceEEeccccceeeeeeecccCcEEEEEeCC-CcEEEEE
Confidence 345588999999632 223335667777777778888777654 44556677 9999985
No 78
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=34.32 E-value=2.9e+02 Score=26.69 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=37.6
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc--eEEEEEcCCcEEEEEC
Q 013152 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS--HCLAVTVEGEVQSWGR 150 (448)
Q Consensus 85 ~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~ 150 (448)
++-...|+||+|-.... ++...++......+..|+|.+...+ ..+++.++|.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCC--------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 33333499999963221 1223445555556778888887764 4567788999999964
No 79
>PRK05560 DNA gyrase subunit A; Validated
Probab=33.51 E-value=7e+02 Score=27.63 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=103.4
Q ss_pred ccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-----ceEEEEEcCCcEEEEECCC
Q 013152 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~-----~h~~~lt~~G~vy~wG~n~ 152 (448)
...+..+++|+. |++|..-...--..+..... ......+....+.+|+.+.+-. ...+++|++|.+.-.-.+.
T Consensus 546 ~t~d~LllfTs~-Grv~~l~v~~iP~~~~~~~G-~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNR-GRVYRLKVYEIPEASRTARG-RPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecC-CeEEEEEhhhCcCCCcCCCC-eEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 345567777877 99999865532222110100 0000112333566788776644 4578899999777654333
Q ss_pred CCccCCCCCCCcccceeeecccCccEEEEE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCC
Q 013152 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 153 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (448)
+-....+ -...+..-++..++.+. ...++.+++|++|++|.+-...--..+.... ..++..+ ..++
T Consensus 624 ~~~~~r~------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~L-~~~E 691 (805)
T PRK05560 624 FSNIRSN------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIKL-REGD 691 (805)
T ss_pred hhhcccC------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----CcccccC-CCCC
Confidence 2111000 00011111233444433 3445789999999999886544323222111 1111122 1245
Q ss_pred eEEEEEecC---ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEE--EEcCCCeeEEEeCCCcEEE
Q 013152 231 KMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKLYG 305 (448)
Q Consensus 231 ~i~~i~~G~---~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~h~~~lt~~G~vy~ 305 (448)
+|+.+.+-. .+.++++++|.+.-.-.+++-....+.... .-.++..- +..+.. +..+.+..+++|++|++.-
T Consensus 692 ~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~--~~lkl~~~-~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 692 EVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV--ITIKITEK-NGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred EEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE--EeeeccCC-CCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 666665543 257788888876655433222111100000 00011000 112222 2234456788888888877
Q ss_pred eecCC
Q 013152 306 WGWNK 310 (448)
Q Consensus 306 wG~n~ 310 (448)
+-.++
T Consensus 769 f~~~e 773 (805)
T PRK05560 769 TRVSE 773 (805)
T ss_pred EEHHH
Confidence 66543
No 80
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=33.05 E-value=50 Score=21.38 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=11.8
Q ss_pred CCceEEEEcCCeEEEEe
Q 013152 28 ASHSVALLSGNIVCSWG 44 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG 44 (448)
..|+++...++++|++|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 36888888889999998
No 81
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=32.27 E-value=4.6e+02 Score=29.12 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCC-CCCCCcc-cceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECC
Q 013152 83 TTAYSESCMQVYSWGWGDFGRLGH-GNSSDLF-TPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~g~lG~-g~~~~~~-~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 151 (448)
-+.+|.| ++|+.|-.|+....-. ++-+... .-..++.-.+.-+. .-.|.+++.+.-++|..|-.
T Consensus 95 rcWiT~d-nkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs----~i~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 95 RCWITND-NKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVS----RISHLLFVATEKEVMILGVS 160 (1263)
T ss_pred ceEEEcC-CEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHH----hhhhhhhhhhhheeeEEEEE
Confidence 4788998 9999998775432211 0111110 11111111111122 22588999889999998853
No 82
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=31.41 E-value=2e+02 Score=28.43 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred EEEEEecCce---EEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013152 126 VKQIACGDSH---CLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (448)
Q Consensus 126 i~~I~~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~w 200 (448)
+..+.+++.+ .+++..+|++..|-.+. .+.++. +...+.+|..=....+|++..|+||++
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~--------------Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i 224 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNV--------------LKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWI 224 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCe--------------eeEccC-CCceeeEEEEECCEEEEEcCCCeEEEE
No 83
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=30.75 E-value=4.3e+02 Score=24.36 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=37.5
Q ss_pred CCCeeEEEeCCCcEEEeecCCCCcccC-CCCCCccCceEeecCCCCcEE-EEEcCCCeeEEEECCCCEEEEeCCC
Q 013152 290 GWRHTMAVTSDGKLYGWGWNKFGQVGV-GDNVDHCSPVQVKFPLDQKVV-QISCGWRHTLAVTERQNVFSWGRGT 362 (448)
Q Consensus 290 G~~h~~~lt~~G~vy~wG~n~~GqLG~-g~~~~~~~p~~v~~~~~~~v~-~i~~G~~h~~al~~~g~v~~wG~n~ 362 (448)
-++-+..+..||+|++.|-...--.-. ........+..+.++. ... ......+=.+.|..+|+||.|+.+.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~--~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLS--QTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecch--hhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 478889999999999998443100000 0000011122222221 111 1223344456788899999999853
No 84
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=30.31 E-value=5.2e+02 Score=25.13 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=30.6
Q ss_pred CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEE-EEcCCCeeEEEECCCCEEEE
Q 013152 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ-ISCGWRHTLAVTERQNVFSW 358 (448)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~-i~~G~~h~~al~~~g~v~~w 358 (448)
..+.++.+.+|.||++-... |++= -..+.....-... +..+ .+.++.+.+|+||+|
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 34777778899999985432 2220 0111111100111 2233 567788899999986
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.25 E-value=4.7e+02 Score=26.27 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEe--CCCcEEEeecCCCCcccC
Q 013152 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVT--SDGKLYGWGWNKFGQVGV 316 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt--~~G~vy~wG~n~~GqLG~ 316 (448)
..+++++-.||-+|..|. ..|++...+......-.+.+. ...+|+.|+.+.+-....+ +|+.|..|-....
T Consensus 349 ~~ts~~fHpDgLifgtgt-~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl----- 421 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGT-PDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL----- 421 (506)
T ss_pred eeEEeeEcCCceEEeccC-CCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhh-----
Q ss_pred CCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEE
Q 013152 317 GDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSW 358 (448)
Q Consensus 317 g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~w 358 (448)
.....+.++....+..+..-..-++......+|+..
T Consensus 422 ------~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 422 ------KNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ------cccceeeccccccceeEEEcCCCCeEEeecceeEEE
No 86
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=29.92 E-value=5.5e+02 Score=25.28 Aligned_cols=156 Identities=15% Similarity=0.219 Sum_probs=71.8
Q ss_pred cEEEEEccCC-ee-EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-ceEEEEEcCCcEEEE
Q 013152 72 EIVSVTCGAD-HT-TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSW 148 (448)
Q Consensus 72 ~i~~v~~G~~-~~-~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~-~h~~~lt~~G~vy~w 148 (448)
.+..|..|.. |. .+.+.|...+|+.+.. |. -..+.......+..|..|. .+.++++.||+...-
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--Ce-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 3556666544 44 3345552358887532 22 2334444455677887776 567899999986655
Q ss_pred ECCCCCccCCCCCCCcccceeeec--c----cCccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccce
Q 013152 149 GRNQNGQLGLGTTEDSLVPQKLQA--F----EGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (448)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~--~----~~~~i~~ia~G~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 219 (448)
++...+++..-+......-+.+.. . ...++..|.... .+.+.|.+.+++|.--.... .+
T Consensus 95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~------------~~ 162 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP------------KN 162 (369)
T ss_dssp EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS------------SC
T ss_pred EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc------------cc
Confidence 554444443322221111111111 0 123555554432 35566777788886632110 11
Q ss_pred eeeeeeccCCCeEEEEEecC-ceEEEEEcCCCEEEEcCCCCCCC
Q 013152 220 EKVATVDLQREKMVMVACGW-RHTISVSSSGRLYSYGWSKYGQL 262 (448)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G~-~hs~~l~~~G~vy~~G~n~~gql 262 (448)
..+..+..+. -|=.+++.+|+.|.-+.+....+
T Consensus 163 ----------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 163 ----------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp ----------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ----------cceeeecccccccccccCcccceeeeccccccee
Confidence 1233333333 35567788888766555444444
No 87
>PHA02790 Kelch-like protein; Provisional
Probab=29.71 E-value=3.8e+02 Score=27.41 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=10.0
Q ss_pred EEcCCcEEEEECC
Q 013152 139 VTVEGEVQSWGRN 151 (448)
Q Consensus 139 lt~~G~vy~wG~n 151 (448)
..-+|+||..|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 4468999999864
No 88
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.56 E-value=1.2e+02 Score=17.23 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=13.9
Q ss_pred eEEEEEcCCcEEEEECCC
Q 013152 135 HCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 135 h~~~lt~~G~vy~wG~n~ 152 (448)
|.++++.+|+||..-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678888999999876543
No 89
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=27.32 E-value=6.4e+02 Score=25.22 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=88.7
Q ss_pred CCEEEEee-CCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeec--CCCCCcEEEEEccCCeeEEEEcCCCEEEE
Q 013152 19 RPVLLISA-GASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLS--ALDGHEIVSVTCGADHTTAYSESCMQVYS 95 (448)
Q Consensus 19 ~~i~~i~~-G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~--~~~~~~i~~v~~G~~~~~~l~~~~g~v~~ 95 (448)
.+|+.+.- -..+.++|.+||.+++. +-.|.. ....+..+. ...+.++-.+..+..-.++++.+ +++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGN-NRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECCC-CeEEE
Confidence 45555554 34466777788887776 223332 011111111 11122233345555567778887 99998
Q ss_pred EeCCCCC-CcCCCCCCCcccceeec---ccC-CCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceee
Q 013152 96 WGWGDFG-RLGHGNSSDLFTPLPIK---ALH-SLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (448)
Q Consensus 96 wG~n~~g-~lG~g~~~~~~~p~~v~---~l~-~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (448)
-=....- .+..-. ..|.... ... ...+..+......-+.+...+.++..-.+...+ +
T Consensus 152 v~n~~~~~~~~~~~----~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------------i 213 (410)
T PF04841_consen 152 VNNIDEPVKLRRLP----EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------------I 213 (410)
T ss_pred EeCccccchhhccc----cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------------c
Confidence 7333211 000000 1111111 000 111222222223334444455566443332211 1
Q ss_pred ecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcC
Q 013152 171 QAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS 248 (448)
Q Consensus 171 ~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~ 248 (448)
. ...+|.+|+.. ..|.++++++|++|+.-. +..+. ..+... ........-..||.+ +++|.-.
T Consensus 214 ~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ss-Df~~~----------~~e~~~-~~~~~p~~~~WCG~d-av~l~~~ 278 (410)
T PF04841_consen 214 D--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSS-DFSEK----------LCEFDT-DSKSPPKQMAWCGND-AVVLSWE 278 (410)
T ss_pred c--CCCCeEEEEECCCCCEEEEEECCCCEEEEEC-cccce----------eEEeec-CcCCCCcEEEEECCC-cEEEEeC
Confidence 1 12357776665 467788889999997632 21110 011100 011233445678875 4555546
Q ss_pred CCEEEEcC
Q 013152 249 GRLYSYGW 256 (448)
Q Consensus 249 G~vy~~G~ 256 (448)
..|+..|.
T Consensus 279 ~~l~lvg~ 286 (410)
T PF04841_consen 279 DELLLVGP 286 (410)
T ss_pred CEEEEECC
Confidence 67877773
No 90
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=25.83 E-value=5.7e+02 Score=25.67 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCc------eEEEEEcCCCEEEEcCCCC
Q 013152 186 EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR------HTISVSSSGRLYSYGWSKY 259 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~------hs~~l~~~G~vy~~G~n~~ 259 (448)
.|-++.-..|.+|.+| |.+..........-..+-.+.....+..+|..+.. |-|++- ..+++.||
T Consensus 124 shq~va~~s~~l~~fG----GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvaw-K~~lilFG---- 194 (521)
T KOG1230|consen 124 SHQAVAVPSNILWLFG----GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAW-KRQLILFG---- 194 (521)
T ss_pred cceeEEeccCeEEEec----cccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEe-eeeEEEEc----
Q ss_pred CCCCCCCCCCceeeeeeccccCCcEEEEEcCC-------CeeEEEeCCCcEEEee
Q 013152 260 GQLGHGDFKDHLVPCQLEALRESFISQISGGW-------RHTMAVTSDGKLYGWG 307 (448)
Q Consensus 260 gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~-------~h~~~lt~~G~vy~wG 307 (448)
|---.........-..+-.|..-+..++..+. .|+++.+-+|.+|+||
T Consensus 195 GFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 195 GFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred ceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEc
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.42 E-value=9.9e+02 Score=26.07 Aligned_cols=78 Identities=26% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCEEEEEecC-ceEEEEEcCCcEEE------EECCCCCccCCCCCCCcccceeeecc---cCccEEEEE-----eCCCeE
Q 013152 124 LRVKQIACGD-SHCLAVTVEGEVQS------WGRNQNGQLGLGTTEDSLVPQKLQAF---EGVSIKMVA-----AGAEHS 188 (448)
Q Consensus 124 ~~i~~I~~G~-~h~~~lt~~G~vy~------wG~n~~gqlG~~~~~~~~~p~~v~~~---~~~~i~~ia-----~G~~~~ 188 (448)
..|.+|.... .+.++|.-.-.|.. ||.+.+-+-|......+..|..-..+ ....|+++. ....|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3677777654 23344443333332 56554333333222222222221111 234577764 347899
Q ss_pred EEEecCCcEEEee
Q 013152 189 VAVAEDGELYGWG 201 (448)
Q Consensus 189 ~~lt~~G~vy~wG 201 (448)
++||+|+.+-.+-
T Consensus 165 ~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 165 VVLTSDNTLRLYD 177 (717)
T ss_pred EEEecCCEEEEEe
Confidence 9999999887664
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.29 E-value=7.5e+02 Score=24.27 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCC
Q 013152 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG 107 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g 107 (448)
..+.++...+|.+++.-....-.+-.........| .......++.+.+ |+||+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--------------~~~~~~vy~~~~~-g~l~al----------- 309 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDF--------------AVDGGRIYLVDQN-DRVYAL----------- 309 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCc--------------EEECCEEEEEcCC-CeEEEE-----------
Q ss_pred CCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCe
Q 013152 108 NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEH 187 (448)
Q Consensus 108 ~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~ 187 (448)
+..+-..--....+..........-....++.+.+|.||+. +...-..-.........-...-.....+
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~l-----------d~~tG~~~~~~~~~~~~~~s~P~~~~~~ 378 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWI-----------NREDGRFVAQQKVDSSGFLSEPVVADDK 378 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEE-----------ECCCCCEEEEEEcCCCcceeCCEEECCE
Q ss_pred EEEEecCCcEEEe
Q 013152 188 SVAVAEDGELYGW 200 (448)
Q Consensus 188 ~~~lt~~G~vy~w 200 (448)
.++.+++|+||++
T Consensus 379 l~v~t~~G~l~~~ 391 (394)
T PRK11138 379 LLIQARDGTVYAI 391 (394)
T ss_pred EEEEeCCceEEEE
No 93
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.89 E-value=1.5e+02 Score=22.08 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCCEEEEEec-CceEEEEEcCCcEEEEECCCCCcc
Q 013152 123 SLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQL 156 (448)
Q Consensus 123 ~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~gql 156 (448)
+..=..|+|. ..-.++|++||.+|.-+--+.|.+
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4456789999 899999999999999886556654
No 94
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=21.61 E-value=7.7e+02 Score=24.16 Aligned_cols=277 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred eeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc-e------
Q 013152 63 TQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS-H------ 135 (448)
Q Consensus 63 ~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~-h------ 135 (448)
..+..-....+..|..|..--.+++.| |+...--...+-++-+|...+...-.-...+. .+.+|..+.. +
T Consensus 30 ~ViD~~~~~v~g~i~~G~~P~~~~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 30 YTIDGEAGRVLGMTDGGFLPNPVVASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEECCCCEEEEEEEccCCCceeECCC-CCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCc
Q ss_pred --EEEEEcCCc-EEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCC
Q 013152 136 --CLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (448)
Q Consensus 136 --~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~ 212 (448)
.++|+.||+ +|..-......+..-+......-..+..... ..-...+....+++..||+.........|+ ..-.
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~--~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~ 183 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC--YHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIK 183 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC--cEEEEecCCccEEEeecCceEEEEecCCCc-eEEe
Q ss_pred CCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEE--EEEcC
Q 013152 213 RNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFIS--QISGG 290 (448)
Q Consensus 213 ~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~--~I~~G 290 (448)
......+.+...+.-. ........-++++..|+||..-....+.. +.....+...... ...-|
T Consensus 184 ~~~vf~~~~~~v~~rP-----~~~~~dg~~~~vs~eG~V~~id~~~~~~~----------~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP-----AYSNKSGRLVWPTYTGKIFQIDLSSGDAK----------FLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred eeeeecCCccccccCC-----ceEcCCCcEEEEecCCeEEEEecCCCcce----------ecceeeeccccccccccCCC
Q ss_pred CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCC-eeEEEECCCCEEEEeCCC
Q 013152 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRGT 362 (448)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~-h~~al~~~g~v~~wG~n~ 362 (448)
...-++++.+|+-.---.+..+. -.+...-..-..+.....+.+..|..|.. +.++++.||+.+.+-.|.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~--~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAK--WTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCcc--ccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
No 95
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.42 E-value=5.3e+02 Score=25.17 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=74.3
Q ss_pred EEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCc--------ccceeeecccCccEEEEEeCCCeEEEEecCCc-E
Q 013152 127 KQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDS--------LVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-L 197 (448)
Q Consensus 127 ~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~--------~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~-v 197 (448)
=.|..|...-++++.||+-+.-=.-.+....+|...+. ..|..-..++.. -+..+.-..+.+.|+.||+ +
T Consensus 31 Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-~R~~~~~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 31 GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-PRAQVVPYKNMFALSADGKFL 109 (342)
T ss_dssp EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS--B--BS--GGGEEE-TTSSEE
T ss_pred EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-chheecccccceEEccCCcEE
Confidence 35777887888888887744322212222222221111 111111111111 0122334677788988886 6
Q ss_pred EEeeCCCCCCCCCCCCCCcccee-eeeeeccCCCeEEE----------EEecCceEEEEEcCCCEEEEcCCCCCCCCCCC
Q 013152 198 YGWGWGRYGNLGLGDRNDRLIPE-KVATVDLQREKMVM----------VACGWRHTISVSSSGRLYSYGWSKYGQLGHGD 266 (448)
Q Consensus 198 y~wG~n~~gqlg~~~~~~~~~p~-~v~~~~~~~~~i~~----------i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~ 266 (448)
|++-. +|. -|.-++....+++. .-.+..-...|..||.+........|+.-
T Consensus 110 ~V~N~---------------TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~--- 171 (342)
T PF06433_consen 110 YVQNF---------------TPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA--- 171 (342)
T ss_dssp EEEEE---------------SSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---
T ss_pred EEEcc---------------CCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---
Confidence 66631 221 12222222333322 23444555678888888888776666542
Q ss_pred CCCceeeeeeccccCCcEE---EEEcCCCeeEEEeCCCcEEEeec
Q 013152 267 FKDHLVPCQLEALRESFIS---QISGGWRHTMAVTSDGKLYGWGW 308 (448)
Q Consensus 267 ~~~~~~p~~v~~~~~~~i~---~I~~G~~h~~~lt~~G~vy~wG~ 308 (448)
...+++-...+..+- .......+.++++-+|+||..-.
T Consensus 172 ----~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 172 ----QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp ----EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ----EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 111122111111111 12345678889999999998653
No 96
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=21.01 E-value=4.7e+02 Score=23.89 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=13.7
Q ss_pred EEEeeC---CCceEEEEcCCeEEEEeC
Q 013152 22 LLISAG---ASHSVALLSGNIVCSWGR 45 (448)
Q Consensus 22 ~~i~~G---~~~~~~l~~~g~v~~wG~ 45 (448)
++|..| ..-.+++..+|.||+-..
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~ 99 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGVLYAVTP 99 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS-EEEEET
T ss_pred cccccCcccceeEEEecCCccEEEecc
Confidence 567777 555666677777777765
No 97
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=20.97 E-value=97 Score=20.31 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=13.3
Q ss_pred cCCeeEEEEcCCCEEEEE
Q 013152 79 GADHTTAYSESCMQVYSW 96 (448)
Q Consensus 79 G~~~~~~l~~~~g~v~~w 96 (448)
+..++.++.+|+|.|-+|
T Consensus 33 sGsfs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 33 SGSFSQAVNEDNGQVRIW 50 (51)
T ss_dssp SS--EEEEEETTTTEEEE
T ss_pred ccchHhhhhccCCcEEee
Confidence 456888888888999888
No 98
>PLN02772 guanylate kinase
Probab=20.87 E-value=3.6e+02 Score=26.95 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=35.1
Q ss_pred CCeeEEEEcCCCEEEEEeC-CCCCCcCCC------CCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECC
Q 013152 80 ADHTTAYSESCMQVYSWGW-GDFGRLGHG------NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~-n~~g~lG~g------~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 151 (448)
..|+++...+ ++|+||. |+.+.+-.. .+..+..|...-... .+...|++++-.+.+++..+..
T Consensus 26 ~~~tav~igd--k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P-------~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 26 NRETSVTIGD--KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP-------KPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CcceeEEECC--EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC-------CCCCcceEEEECCceEEEEeCC
Confidence 4466666554 9999994 443323211 111222332221111 1335799999999999999753
No 99
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.74 E-value=1.5e+02 Score=33.06 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=23.0
Q ss_pred CcEEEEE-cCCCeeEEEe--CCCcEEEeecCCCCccc
Q 013152 282 SFISQIS-GGWRHTMAVT--SDGKLYGWGWNKFGQVG 315 (448)
Q Consensus 282 ~~i~~I~-~G~~h~~~lt--~~G~vy~wG~n~~GqLG 315 (448)
.-|..++ |..+-.++|+ +|+++++|+-|.--+|+
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 3466655 6666456665 58999999998855554
Done!