Query 013152
Match_columns 448
No_of_seqs 453 out of 2188
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 8.3E-84 2.8E-88 643.9 45.8 399 11-411 8-406 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 5.3E-74 1.8E-78 570.0 33.2 369 23-396 5-377 (389)
3 3mvd_K Regulator of chromosome 100.0 3.2E-71 1.1E-75 556.6 38.8 373 12-397 17-409 (423)
4 1a12_A RCC1, regulator of chro 100.0 1.7E-70 5.8E-75 549.4 38.7 365 23-396 12-399 (413)
5 3of7_A Regulator of chromosome 100.0 7.6E-70 2.6E-74 553.3 35.5 377 15-397 6-441 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.4E-68 4.8E-73 531.1 35.2 333 18-353 52-388 (389)
7 4d9s_A UVB-resistance protein 100.0 7.7E-66 2.6E-70 514.1 40.6 345 71-420 16-365 (406)
8 1a12_A RCC1, regulator of chro 100.0 6.2E-65 2.1E-69 509.1 38.0 337 12-355 52-412 (413)
9 3mvd_K Regulator of chromosome 100.0 1.3E-63 4.5E-68 501.3 42.3 335 11-354 67-420 (423)
10 3of7_A Regulator of chromosome 100.0 1.3E-62 4.3E-67 500.2 38.2 327 17-351 65-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 2.7E-53 9.3E-58 401.7 30.2 260 12-356 17-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 6.3E-52 2.1E-56 392.3 29.8 250 39-368 3-252 (282)
13 1p22_A F-BOX/WD-repeat protein 97.6 0.073 2.5E-06 52.0 35.2 282 18-362 133-414 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.41 1.4E-05 46.6 37.8 267 21-361 122-390 (445)
15 1p22_A F-BOX/WD-repeat protein 96.5 0.69 2.3E-05 44.9 33.5 229 72-360 135-363 (435)
16 2zwa_A Leucine carboxyl methyl 96.4 0.53 1.8E-05 49.3 23.2 19 238-256 597-615 (695)
17 4gbf_A Phikz131; 7-bladed beta 96.3 0.0099 3.4E-07 52.6 7.3 71 282-365 309-379 (400)
18 2zwa_A Leucine carboxyl methyl 96.2 0.97 3.3E-05 47.3 23.4 150 133-308 441-615 (695)
19 4gbf_A Phikz131; 7-bladed beta 96.1 0.0093 3.2E-07 52.8 6.1 85 19-117 309-396 (400)
20 1k3i_A Galactose oxidase precu 95.8 2.2 7.4E-05 44.2 26.0 73 239-313 457-534 (656)
21 2ovr_B FBW7, F-BOX/WD repeat p 95.7 1.6 5.6E-05 42.2 38.2 230 17-310 158-391 (445)
22 1k3i_A Galactose oxidase precu 94.8 4.2 0.00015 41.9 28.2 72 291-364 457-533 (656)
23 3mmy_A MRNA export factor; mRN 94.1 3.5 0.00012 38.0 24.7 234 71-361 40-303 (368)
24 3k26_A Polycomb protein EED; W 94.1 3.6 0.00012 37.9 30.3 305 17-360 17-364 (366)
25 1gxr_A ESG1, transducin-like e 94.1 3.4 0.00012 37.5 34.3 276 25-361 8-295 (337)
26 4aez_A CDC20, WD repeat-contai 93.8 4.7 0.00016 38.3 34.4 265 24-361 99-379 (401)
27 3odt_A Protein DOA1; ubiquitin 93.2 4.5 0.00015 36.3 33.0 270 16-361 16-295 (313)
28 1sq9_A Antiviral protein SKI8; 93.2 5.6 0.00019 37.2 30.0 250 16-310 14-322 (397)
29 3v7d_B Cell division control p 92.6 7.7 0.00026 37.4 36.9 278 21-361 125-420 (464)
30 3zwl_B Eukaryotic translation 92.0 7.4 0.00025 35.7 32.4 200 18-256 32-247 (369)
31 3k26_A Polycomb protein EED; W 91.9 7.4 0.00025 35.7 26.7 260 18-308 69-364 (366)
32 3odt_A Protein DOA1; ubiquitin 89.6 11 0.00037 33.6 30.4 186 71-310 105-296 (313)
33 4aez_A CDC20, WD repeat-contai 89.4 15 0.0005 34.8 30.1 224 75-360 98-334 (401)
34 3v7d_B Cell division control p 89.3 16 0.00054 35.1 32.5 279 17-358 161-459 (464)
35 3no0_A DNA gyrase subunit A; D 89.0 13 0.00045 33.7 20.0 216 123-367 23-251 (276)
36 3no0_A DNA gyrase subunit A; D 87.7 16 0.00054 33.1 22.3 217 17-263 22-251 (276)
37 3ii7_A Kelch-like protein 7; p 87.5 12 0.0004 33.9 14.2 17 239-256 141-157 (306)
38 3i2n_A WD repeat-containing pr 87.1 17 0.00059 33.0 29.8 238 18-310 18-291 (357)
39 1gxr_A ESG1, transducin-like e 86.9 17 0.00058 32.6 30.5 236 78-361 9-254 (337)
40 3vl1_A 26S proteasome regulato 86.9 21 0.0007 33.6 32.7 268 24-362 64-365 (420)
41 3gre_A Serine/threonine-protei 86.8 22 0.00074 33.8 22.9 161 18-202 63-243 (437)
42 3sfz_A APAF-1, apoptotic pepti 86.7 42 0.0014 37.0 26.3 220 82-359 1017-1246(1249)
43 4a11_B DNA excision repair pro 86.7 20 0.00069 33.2 34.9 300 17-362 42-365 (408)
44 1q7f_A NHL, brain tumor CG1071 86.4 17 0.00058 32.2 24.8 16 241-256 210-225 (286)
45 3jrp_A Fusion protein of prote 86.4 20 0.00067 32.9 29.1 243 18-310 11-287 (379)
46 4asc_A Kelch repeat and BTB do 85.4 21 0.00073 32.4 15.3 18 239-257 140-157 (315)
47 4g56_B MGC81050 protein; prote 83.5 28 0.00096 32.3 34.8 187 125-362 141-343 (357)
48 2uvk_A YJHT; unknown function, 83.5 28 0.00096 32.2 16.5 18 133-151 110-127 (357)
49 3mkq_A Coatomer beta'-subunit; 83.2 46 0.0016 34.5 30.6 231 19-310 14-259 (814)
50 1pgu_A Actin interacting prote 82.9 39 0.0013 33.4 31.7 186 72-309 162-365 (615)
51 4gqb_B Methylosome protein 50; 82.5 31 0.0011 31.9 31.5 229 72-360 84-329 (344)
52 3uc1_A DNA gyrase subunit A; D 81.6 34 0.0011 31.8 21.4 222 129-368 49-285 (327)
53 3jro_A Fusion protein of prote 79.8 61 0.0021 33.7 27.8 244 18-311 9-286 (753)
54 3fvz_A Peptidyl-glycine alpha- 79.8 36 0.0012 31.0 20.9 22 78-100 23-44 (329)
55 1q7f_A NHL, brain tumor CG1071 78.9 34 0.0011 30.2 24.4 17 293-309 210-226 (286)
56 1zgk_A Kelch-like ECH-associat 78.9 30 0.001 31.3 13.1 16 185-201 113-128 (308)
57 1sq9_A Antiviral protein SKI8; 78.8 41 0.0014 31.1 25.3 120 71-203 17-156 (397)
58 3gre_A Serine/threonine-protei 78.0 47 0.0016 31.3 19.4 117 18-151 111-244 (437)
59 3mmy_A MRNA export factor; mRN 76.5 44 0.0015 30.2 22.1 192 123-362 39-247 (368)
60 3uc1_A DNA gyrase subunit A; D 75.8 50 0.0017 30.6 22.9 221 24-263 49-284 (327)
61 2xn4_A Kelch-like protein 2; s 75.7 20 0.00069 32.2 10.8 16 186-202 197-212 (302)
62 3p6j_A De novo designed beta-t 75.0 31 0.0011 27.7 11.1 109 123-254 29-139 (142)
63 3jrp_A Fusion protein of prote 74.6 50 0.0017 30.0 30.6 239 72-361 13-286 (379)
64 4gga_A P55CDC, cell division c 73.9 60 0.0021 30.6 33.4 139 28-202 115-259 (420)
65 3ii7_A Kelch-like protein 7; p 73.8 50 0.0017 29.6 17.9 16 185-201 192-207 (306)
66 2xn4_A Kelch-like protein 2; s 73.7 42 0.0015 30.0 12.5 60 185-256 100-163 (302)
67 2aq5_A Coronin-1A; WD40 repeat 73.6 59 0.002 30.3 29.6 153 76-256 40-205 (402)
68 2vpj_A Kelch-like protein 12; 73.0 51 0.0018 29.4 13.5 60 185-256 104-167 (301)
69 3no2_A Uncharacterized protein 72.8 52 0.0018 29.3 25.7 166 173-367 85-266 (276)
70 4asc_A Kelch repeat and BTB do 71.9 57 0.0019 29.4 14.7 16 240-256 91-106 (315)
71 2xyi_A Probable histone-bindin 70.7 73 0.0025 30.2 26.4 200 82-309 196-409 (430)
72 4g56_B MGC81050 protein; prote 70.3 67 0.0023 29.6 28.9 187 72-311 141-344 (357)
73 1r5m_A SIR4-interacting protei 70.0 68 0.0023 29.6 31.5 238 19-309 109-360 (425)
74 1pgu_A Actin interacting prote 68.9 92 0.0031 30.6 33.4 190 18-257 160-365 (615)
75 3jro_A Fusion protein of prote 67.6 1.2E+02 0.0041 31.4 27.2 241 72-362 11-285 (753)
76 1xip_A Nucleoporin NUP159; bet 67.4 86 0.0029 29.8 13.4 109 60-200 79-187 (388)
77 1vyh_C Platelet-activating fac 65.6 90 0.0031 29.3 32.2 145 19-202 109-263 (410)
78 2vpj_A Kelch-like protein 12; 65.0 75 0.0026 28.2 17.2 60 185-256 151-214 (301)
79 3mkq_A Coatomer beta'-subunit; 62.9 1.4E+02 0.0049 30.6 28.7 229 72-361 15-258 (814)
80 3vgz_A Uncharacterized protein 62.2 88 0.003 28.0 28.8 65 284-360 266-333 (353)
81 2aq5_A Coronin-1A; WD40 repeat 61.4 1E+02 0.0035 28.5 30.6 154 24-202 40-205 (402)
82 1r5m_A SIR4-interacting protei 60.8 1E+02 0.0035 28.3 30.2 236 72-360 110-359 (425)
83 1erj_A Transcriptional repress 59.5 1.1E+02 0.0038 28.3 22.5 115 125-255 258-386 (393)
84 2ymu_A WD-40 repeat protein; u 58.7 1.4E+02 0.0047 29.1 30.5 219 72-358 346-576 (577)
85 2xyi_A Probable histone-bindin 58.7 1.2E+02 0.0042 28.5 27.6 209 125-360 183-408 (430)
86 1xip_A Nucleoporin NUP159; bet 56.7 1.3E+02 0.0046 28.4 13.5 64 126-202 90-153 (388)
87 4a11_B DNA excision repair pro 56.4 1.2E+02 0.0041 27.7 28.8 250 17-311 98-366 (408)
88 1suu_A DNA gyrase subunit A; t 55.5 1.2E+02 0.0042 27.6 24.3 260 80-361 8-282 (312)
89 3i2n_A WD repeat-containing pr 54.9 1.2E+02 0.004 27.1 30.3 196 18-257 65-290 (357)
90 4ery_A WD repeat-containing pr 54.0 1.2E+02 0.004 26.8 32.6 269 18-360 23-310 (312)
91 1zi0_A DNA gyrase subunit A; b 53.6 1.3E+02 0.0045 27.3 25.4 216 24-259 49-278 (307)
92 2woz_A Kelch repeat and BTB do 53.4 64 0.0022 29.1 9.5 62 185-256 101-166 (318)
93 4gqb_B Methylosome protein 50; 53.4 1.3E+02 0.0046 27.4 29.9 229 19-309 83-330 (344)
94 4e54_B DNA damage-binding prot 52.0 1.6E+02 0.0054 27.7 25.2 148 18-202 119-280 (435)
95 2woz_A Kelch repeat and BTB do 51.2 1.4E+02 0.0047 26.8 14.8 17 239-256 101-117 (318)
96 1yfq_A Cell cycle arrest prote 49.2 1.4E+02 0.0048 26.4 29.8 247 72-360 13-280 (342)
97 3no2_A Uncharacterized protein 48.9 1.4E+02 0.0048 26.3 30.6 166 122-316 86-267 (276)
98 3vl1_A 26S proteasome regulato 47.2 1.7E+02 0.0059 26.9 34.4 223 29-310 110-365 (420)
99 2uvk_A YJHT; unknown function, 47.1 42 0.0014 30.9 7.3 65 185-256 57-126 (357)
100 1suu_A DNA gyrase subunit A; t 45.1 1.8E+02 0.0061 26.5 24.5 218 76-310 54-283 (312)
101 2ymu_A WD-40 repeat protein; u 42.9 2.4E+02 0.0083 27.3 31.5 220 72-359 305-536 (577)
102 2pbi_B Guanine nucleotide-bind 42.2 2E+02 0.0068 26.1 34.6 185 125-358 156-353 (354)
103 3ei3_B DNA damage-binding prot 41.9 2E+02 0.0069 26.1 29.5 194 17-258 72-282 (383)
104 1zvt_A Topoisomerase IV subuni 41.3 1.9E+02 0.0064 25.5 15.3 158 83-264 5-169 (256)
105 4aow_A Guanine nucleotide-bind 40.8 1.9E+02 0.0064 25.5 33.2 280 18-358 38-333 (340)
106 1zi0_A DNA gyrase subunit A; b 39.6 2.2E+02 0.0074 25.8 23.5 217 129-362 49-277 (307)
107 1k8k_C P40, ARP2/3 complex 41 39.5 2.1E+02 0.0071 25.6 30.5 252 18-310 8-274 (372)
108 3fvz_A Peptidyl-glycine alpha- 38.3 2.2E+02 0.0075 25.5 17.9 17 240-256 294-310 (329)
109 3p6j_A De novo designed beta-t 37.8 1.5E+02 0.0053 23.6 15.0 107 174-305 28-138 (142)
110 2pm9_A Protein WEB1, protein t 37.1 2.4E+02 0.0083 25.7 26.5 241 72-363 69-338 (416)
111 3l6v_A GYRA, DNA gyrase subuni 36.8 2.7E+02 0.0092 26.1 24.6 125 24-158 53-186 (370)
112 3sfz_A APAF-1, apoptotic pepti 36.7 4.5E+02 0.015 28.6 31.8 148 18-202 615-772 (1249)
113 3hrp_A Uncharacterized protein 36.4 2.8E+02 0.0094 26.1 22.3 15 241-255 326-340 (409)
114 3q7x_A De novo designed beta-t 35.5 1.6E+02 0.0054 23.1 10.6 105 126-254 8-114 (132)
115 4ggc_A P55CDC, cell division c 33.9 2.3E+02 0.008 24.5 33.5 139 28-202 35-179 (318)
116 2pm9_A Protein WEB1, protein t 33.9 2.7E+02 0.0093 25.3 23.4 244 17-310 66-337 (416)
117 3dsm_A Uncharacterized protein 33.0 2.7E+02 0.0092 25.0 19.1 26 285-310 166-192 (328)
118 1wp5_A Topoisomerase IV; broke 32.3 2.9E+02 0.01 25.2 24.1 224 129-368 46-283 (323)
119 1wp5_A Topoisomerase IV; broke 30.7 3.1E+02 0.011 25.0 25.1 225 76-315 46-282 (323)
120 3f3f_A Nucleoporin SEH1; struc 30.6 2.7E+02 0.0091 24.2 27.2 117 72-204 13-143 (351)
121 3iz6_a 40S ribosomal protein R 30.0 3.2E+02 0.011 24.9 25.3 117 177-309 207-328 (380)
122 1zvu_A Topoisomerase IV subuni 29.1 4.7E+02 0.016 26.9 11.7 124 236-368 511-639 (716)
123 1got_B GT-beta; complex (GTP-b 26.9 3.4E+02 0.012 24.2 33.4 269 18-358 55-339 (340)
124 1erj_A Transcriptional repress 26.7 3.7E+02 0.013 24.6 31.2 239 73-359 126-386 (393)
125 1l0q_A Surface layer protein; 26.1 3.6E+02 0.012 24.2 18.8 230 30-306 35-271 (391)
126 1zvu_A Topoisomerase IV subuni 24.7 5.9E+02 0.02 26.2 11.6 123 130-263 511-638 (716)
127 3sjl_D Methylamine dehydrogena 24.6 4.4E+02 0.015 24.7 15.3 168 126-307 72-253 (386)
128 4aow_A Guanine nucleotide-bind 24.6 3.5E+02 0.012 23.6 28.0 93 137-256 189-284 (340)
129 3e5z_A Putative gluconolactona 24.1 3.5E+02 0.012 23.4 12.5 15 293-307 221-235 (296)
130 1rwi_B Serine/threonine-protei 24.0 3.2E+02 0.011 23.0 17.6 185 135-358 27-218 (270)
131 1yfq_A Cell cycle arrest prote 23.5 3.7E+02 0.013 23.4 31.0 256 16-309 9-281 (342)
132 3f3f_A Nucleoporin SEH1; struc 22.5 3.8E+02 0.013 23.2 31.5 121 18-152 11-143 (351)
133 1bfg_A Basic fibroblast growth 20.4 2.9E+02 0.0098 22.1 6.8 72 12-95 11-84 (146)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.3e-84 Score=643.86 Aligned_cols=399 Identities=83% Similarity=1.408 Sum_probs=368.8
Q ss_pred cccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCC
Q 013152 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (448)
Q Consensus 11 ~~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~ 90 (448)
+++..+++.+|++|+||..|+++|+++|+||+||+|.+||||++..+++..|+++..+.+.+|++|+||..|+++|+++.
T Consensus 8 ~~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 8 ADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp -------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTT
T ss_pred cccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCC
Confidence 35567788999999999999999999999999999999999999999999999999988889999999999999999983
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceee
Q 013152 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (448)
Q Consensus 91 g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (448)
++||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 167 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 167 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred CEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEe
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCC
Q 013152 171 QAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR 250 (448)
Q Consensus 171 ~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~ 250 (448)
..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+
T Consensus 168 ~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 168 QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp GGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCC
T ss_pred cccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCC
Confidence 99998899999999999999999999999999999999999988888898886544 6789999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeec
Q 013152 251 LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF 330 (448)
Q Consensus 251 vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~ 330 (448)
||+||.|.+||||+++..+...|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|+++.+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 325 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF 325 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeeccccCCCCCcccccCC
Q 013152 331 PLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASSKYDPSSGKTWVSPS 410 (448)
Q Consensus 331 ~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (448)
+...+|++|+||.+|++||+++|+||+||+|.+||||+|++.++..|.+|+.++.+|....+++.+......++.|++|+
T Consensus 326 ~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~g~~~~~~~~~~~~~~~~~~w~~~~ 405 (406)
T 4d9s_A 326 PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIESSNIDPSSGKSWVSPA 405 (406)
T ss_dssp GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGCSCSSCCCCCBCTTSCTTC--------
T ss_pred cCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeecCCCceeeEEEecccccccCccccCcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999888899999997
Q ss_pred c
Q 013152 411 E 411 (448)
Q Consensus 411 ~ 411 (448)
|
T Consensus 406 ~ 406 (406)
T 4d9s_A 406 E 406 (406)
T ss_dssp -
T ss_pred C
Confidence 5
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-74 Score=570.02 Aligned_cols=369 Identities=30% Similarity=0.586 Sum_probs=328.4
Q ss_pred EEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCC
Q 013152 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFG 102 (448)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g 102 (448)
++..-..++++|++||+||+||+|.+||||.++.+....|+++..+.+.+|++|+||..|+++|+++ |+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~-G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTAD-GKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETT-SCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCC-CcEEEEECCCCC
Confidence 3445567889999999999999999999999888888899999888777899999999999999999 999999999999
Q ss_pred CcCCCCCCCcccceeecccCCCCE--EEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEE
Q 013152 103 RLGHGNSSDLFTPLPIKALHSLRV--KQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (448)
Q Consensus 103 ~lG~g~~~~~~~p~~v~~l~~~~i--~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (448)
|||.++......|.+++.+....+ ++|+||..|+++|+++|+||+||.|.+||||.++......|+++..+.+.+|++
T Consensus 84 qLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp TTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEE
Confidence 999999988889999998876644 788899999999999999999999999999999999889999999999889999
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--ceEEEEEcCCCEEEEcCCC
Q 013152 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSK 258 (448)
Q Consensus 181 ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~~~G~vy~~G~n~ 258 (448)
|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||. +|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999988888888886554 67899999995 8999999999999999999
Q ss_pred CCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEE
Q 013152 259 YGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQ 338 (448)
Q Consensus 259 ~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 338 (448)
+||||.+.......|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|+++..+...+|++
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 99999999888999999999998899999999999999999999999999999999999998889999999888889999
Q ss_pred EEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeecc
Q 013152 339 ISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS 396 (448)
Q Consensus 339 i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~~~~~~~~~ 396 (448)
|+||.+|++||+++|+||+||+|.+||||+|+..++..|.+|+.+. +....++++.
T Consensus 322 ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~v~~va~G 377 (389)
T 3kci_A 322 IATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ--GKKVNRVACG 377 (389)
T ss_dssp EEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCCCEEEEE
T ss_pred EEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccC--CCCEEEEEec
Confidence 9999999999999999999999999999999999999999987663 4444555443
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.2e-71 Score=556.60 Aligned_cols=373 Identities=27% Similarity=0.412 Sum_probs=315.3
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCC-CCccCCeeecCCCCCcEEEEEccCCeeEEEEcCC
Q 013152 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA-EDRLSPTQLSALDGHEIVSVTCGADHTTAYSESC 90 (448)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~-~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~ 90 (448)
.++.++..++++|++|..|+++|+++|+||+||+|.+||||++.. .....|.++..+. .|++|+||..|+++|+++
T Consensus 17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~- 93 (423)
T 3mvd_K 17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS- 93 (423)
T ss_dssp ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETT-
T ss_pred CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCC-
Confidence 445778889999999999999999999999999999999999875 4567888888776 489999999999999999
Q ss_pred CEEEEEeCCCCCCcCCCCCCC--cccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEEC--CCCCccCCCCCCCccc
Q 013152 91 MQVYSWGWGDFGRLGHGNSSD--LFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDSLV 166 (448)
Q Consensus 91 g~v~~wG~n~~g~lG~g~~~~--~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~ 166 (448)
|+||+||.|.+||||.+.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+.......
T Consensus 94 G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~ 171 (423)
T 3mvd_K 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRT 171 (423)
T ss_dssp SCEEEEECCSSSTTCSCCCSTTSSSSCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEE
T ss_pred CeEEEeECCCCcCCCCCCcCCccccCCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCce
Confidence 999999999999999988754 566777764 3489999999999999999999999998 9999999988776655
Q ss_pred ceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCC-----------CccceeeeeeeccCCCeEEEE
Q 013152 167 PQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRN-----------DRLIPEKVATVDLQREKMVMV 235 (448)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~-----------~~~~p~~v~~~~~~~~~i~~i 235 (448)
|.+ .+...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++.... ..+|++|
T Consensus 172 p~~--~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~--~~~v~~i 247 (423)
T 3mvd_K 172 PID--LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR--AKPFEAI 247 (423)
T ss_dssp EEE--SSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT--CCCEEEE
T ss_pred eeE--ecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC--CccEEEE
Confidence 544 4567789999999999999999999999999999999987642 345677765433 5689999
Q ss_pred EecCceEEEE-EcCCCEEEEcCCCCCCCCCCCCCC--ceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCC
Q 013152 236 ACGWRHTISV-SSSGRLYSYGWSKYGQLGHGDFKD--HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFG 312 (448)
Q Consensus 236 ~~G~~hs~~l-~~~G~vy~~G~n~~gqlg~~~~~~--~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~G 312 (448)
+||.+|++++ +++|+||+||.|.+||||.+.... ...|.++. + .+|++|+||.+|+++|+++|+||+||.|.+|
T Consensus 248 ~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~--~~v~~ia~G~~ht~alt~~G~v~~wG~n~~G 324 (423)
T 3mvd_K 248 WATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L--KDIRHIAGGQHHTVILTTDLKCSVVGRPEYG 324 (423)
T ss_dssp EEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C--CSEEEEEECSSEEEEEETTCCEEEEECCGGG
T ss_pred EECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C--CCeEEEEcccCeEEEEeCCCcEEEEECCCCC
Confidence 9999999999 599999999999999999965433 34555554 3 4599999999999999999999999999999
Q ss_pred cccCCCCCC-ccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceE
Q 013152 313 QVGVGDNVD-HCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQ 391 (448)
Q Consensus 313 qLG~g~~~~-~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~~~~ 391 (448)
|||.++..+ ...|.+++.+.. +|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|.+|..+.+.+....
T Consensus 325 qLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~ 403 (423)
T 3mvd_K 325 RLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 403 (423)
T ss_dssp TTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEE
T ss_pred CCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEE
Confidence 999998766 357888877655 899999999999999999999999999999999999999999999987666777777
Q ss_pred Eeeccc
Q 013152 392 NIASSK 397 (448)
Q Consensus 392 ~~~~~~ 397 (448)
++++..
T Consensus 404 ~va~G~ 409 (423)
T 3mvd_K 404 LASGGG 409 (423)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 777654
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.7e-70 Score=549.42 Aligned_cols=365 Identities=32% Similarity=0.509 Sum_probs=315.4
Q ss_pred EEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-ccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCC
Q 013152 23 LISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-RLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDF 101 (448)
Q Consensus 23 ~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~ 101 (448)
+.+.+..|+++|+++|+||+||.|.+||||++.... ...|+++..+ .+|++|+||..|+++|+++ |+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~-G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKS-GQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETT-SCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCC-CCEEEEECCCC
Confidence 566778999999999999999999999999998654 6788888755 4799999999999999999 99999999999
Q ss_pred CCcCCCCCC--CcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEEC--CCCCccCCCCCCCc-ccceeeecccCc
Q 013152 102 GRLGHGNSS--DLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGR--NQNGQLGLGTTEDS-LVPQKLQAFEGV 176 (448)
Q Consensus 102 g~lG~g~~~--~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~-~~p~~v~~~~~~ 176 (448)
||||.+... ....|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||.+..... ..|.++ +...
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~ 164 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 164 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCC
Confidence 999998763 4567877743 3489999999999999999999999998 89999998876543 347766 4566
Q ss_pred cEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-----------ccceeeeeeecc---CCCeEEEEEecCceE
Q 013152 177 SIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND-----------RLIPEKVATVDL---QREKMVMVACGWRHT 242 (448)
Q Consensus 177 ~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~-----------~~~p~~v~~~~~---~~~~i~~i~~G~~hs 242 (448)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875421 245654433211 346899999999999
Q ss_pred EEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccC--CcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCC-CC
Q 013152 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE--SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVG-DN 319 (448)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g-~~ 319 (448)
++|+++|+||+||.|.+||||.++......|.++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+ +.
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~ 324 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA 324 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCC
Confidence 999999999999999999999999888899999998877 679999999999999999999999999999999998 45
Q ss_pred CCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCceEEeecc
Q 013152 320 VDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSKGQNIASS 396 (448)
Q Consensus 320 ~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~~~~~~~~~ 396 (448)
.....|++|+.+ .+|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|.+|+...+.+....++++.
T Consensus 325 ~~~~~P~~v~~l--~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G 399 (413)
T 1a12_A 325 EEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSG 399 (413)
T ss_dssp CCEEEEEECCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEEC
T ss_pred ccccCCEEeccc--CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeC
Confidence 566778888765 389999999999999999999999999999999999998888999887654555566666554
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-70 Score=553.27 Aligned_cols=377 Identities=25% Similarity=0.417 Sum_probs=320.5
Q ss_pred CCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCC---CCccCCeeecCC--CCCcEEEEEccCCeeEEEEcC
Q 013152 15 AAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDA---EDRLSPTQLSAL--DGHEIVSVTCGADHTTAYSES 89 (448)
Q Consensus 15 ~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~---~~~~~P~~v~~~--~~~~i~~v~~G~~~~~~l~~~ 89 (448)
-.|...|....+...|+++++++|+||+||.|.+||||++.. .+...|++++.+ ...+|++|+||..|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~ 85 (473)
T 3of7_A 6 HHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE 85 (473)
T ss_dssp ---CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETT
T ss_pred chhhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecC
Confidence 346677888899999999999999999999999999999984 345678887766 456899999999999999999
Q ss_pred CCEEEEEeCCCCCCcCCCCCCC-----------------------cccceeecc--c----CCCCEEEEEecCceEEEEE
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSD-----------------------LFTPLPIKA--L----HSLRVKQIACGDSHCLAVT 140 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~-----------------------~~~p~~v~~--l----~~~~i~~I~~G~~h~~~lt 140 (448)
|+||+||.|.+||||.+.... ...|.++.. + .+.+|++|+||..|+++|+
T Consensus 86 -G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt 164 (473)
T 3of7_A 86 -SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF 164 (473)
T ss_dssp -CCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE
T ss_pred -CeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe
Confidence 999999999999999987654 457887775 4 3679999999999999999
Q ss_pred cCCcEEEEEC--CCCCccCCCCC--CCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC-
Q 013152 141 VEGEVQSWGR--NQNGQLGLGTT--EDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND- 215 (448)
Q Consensus 141 ~~G~vy~wG~--n~~gqlG~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~- 215 (448)
++|+||+||. +..||||.... .....|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 165 ~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~ 244 (473)
T 3of7_A 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERF 244 (473)
T ss_dssp TTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGG
T ss_pred CCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccc
Confidence 9999999998 67899998544 356678888888888999999999999999999999999999999999886533
Q ss_pred ---ccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCC----CceeeeeeccccCCcEEEEE
Q 013152 216 ---RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFK----DHLVPCQLEALRESFISQIS 288 (448)
Q Consensus 216 ---~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~I~ 288 (448)
...|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.+.+|++|+
T Consensus 245 ~~~~~~p~~~~-----~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia 319 (473)
T 3of7_A 245 RLKTLDPRPFG-----LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319 (473)
T ss_dssp TTTTCSCEECS-----CCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEE
T ss_pred cccccCceecC-----CcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEE
Confidence 34455542 2589999999999999999999999999999999998754 34679999988888899999
Q ss_pred cCCCeeEEEeCCCcEEEeecCCCCcccCCCCC------------CccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEE
Q 013152 289 GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNV------------DHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVF 356 (448)
Q Consensus 289 ~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~------------~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~ 356 (448)
||.+|+++|+++|+||+||.|.+||||.+... ....+.+..++...+|++|+||.+|++||+++|+||
T Consensus 320 ~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy 399 (473)
T 3of7_A 320 AGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAY 399 (473)
T ss_dssp ECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEETTSCEE
T ss_pred eCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEEEeCCCeEEEEeCCCcEE
Confidence 99999999999999999999999999987531 112233333333348999999999999999999999
Q ss_pred EEeCCCCCCCCCCC-CCCCCCCeEeeeccCCCCceEEeeccc
Q 013152 357 SWGRGTNGQLGHGE-SSDRNSPKIIEPLSLDGSKGQNIASSK 397 (448)
Q Consensus 357 ~wG~n~~gqLG~g~-~~~~~~P~~i~~~~~~g~~~~~~~~~~ 397 (448)
+||.|.+||||+|+ ..++..|.+|+.+...+.....+.+..
T Consensus 400 ~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~ 441 (473)
T 3of7_A 400 SWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGG 441 (473)
T ss_dssp EEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECS
T ss_pred EeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCC
Confidence 99999999999999 788999999987766776666666554
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-68 Score=531.07 Aligned_cols=333 Identities=31% Similarity=0.568 Sum_probs=313.8
Q ss_pred CCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCC--cEEEEEccCCeeEEEEcCCCEEEE
Q 013152 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGH--EIVSVTCGADHTTAYSESCMQVYS 95 (448)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~--~i~~v~~G~~~~~~l~~~~g~v~~ 95 (448)
..+|++|+||..|+++|+++|+||+||.|.+||||.+..+....|+++..+.+. ++++|+||..|+++|+++ |+||+
T Consensus 52 ~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~-G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETT-SCEEE
T ss_pred CCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCC-CCEEE
Confidence 458999999999999999999999999999999999998888999999887765 447899999999999999 99999
Q ss_pred EeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccC
Q 013152 96 WGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEG 175 (448)
Q Consensus 96 wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 175 (448)
||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+.+
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEE
Q 013152 176 VSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYS 253 (448)
Q Consensus 176 ~~i~~ia~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~ 253 (448)
.+|++|+||. .|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+||+
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999999995 89999999999999999999999999888888888886554 6689999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCC
Q 013152 254 YGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLD 333 (448)
Q Consensus 254 ~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 333 (448)
||.|.+||||.++......|.++..+.+.+|++|+||.+|+++|+++|+||+||+|.+||||.++..+...|++++.+..
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~ 368 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999988888
Q ss_pred CcEEEEEcCCCeeEEEECCC
Q 013152 334 QKVVQISCGWRHTLAVTERQ 353 (448)
Q Consensus 334 ~~v~~i~~G~~h~~al~~~g 353 (448)
.+|++|+||.+|++||++++
T Consensus 369 ~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 369 KKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp SCCCEEEEETTEEEEECC--
T ss_pred CCEEEEEecCCcEEEEecCC
Confidence 89999999999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=7.7e-66 Score=514.06 Aligned_cols=345 Identities=35% Similarity=0.674 Sum_probs=315.7
Q ss_pred CcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCC-cEEEEE
Q 013152 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG-EVQSWG 149 (448)
Q Consensus 71 ~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G-~vy~wG 149 (448)
.+|++|+||..|+++|+++ |+||+||.|.+||||+++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||
T Consensus 16 ~~v~~ia~G~~hs~al~~~-g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSG-DIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCEEEEEECSSEEEEEETT-TEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred cceEEEecCCCeEEEEEeC-CEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 4799999999999999999 99999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCC
Q 013152 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (448)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (448)
.|.+||||.+.......|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+. .
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~ 172 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE--G 172 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--T
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC--C
Confidence 99999999999988889999999988899999999999999999999999999999999999988888888886554 6
Q ss_pred CeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecC
Q 013152 230 EKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 230 ~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (448)
.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|.++..+...+|++|+||.+|+++|+++|+||+||.|
T Consensus 173 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 173 IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCC
Confidence 78999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred CCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCCCCCCCCCCCCCCCCCCeEeeeccCCCCc
Q 013152 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRGTNGQLGHGESSDRNSPKIIEPLSLDGSK 389 (448)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n~~gqLG~g~~~~~~~P~~i~~~~~~g~~ 389 (448)
.+||||.++..+...|.++..+...+|++|+||.+|++||+++|+||+||+|.+||||+++..+...|.+++.+. ...
T Consensus 253 ~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~ 330 (406)
T 4d9s_A 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD--DQK 330 (406)
T ss_dssp TTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG--GCC
T ss_pred CCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC--CCc
Confidence 999999999988899999988878889999999999999999999999999999999999998888899887553 334
Q ss_pred eEEeecccc----CCCCCcccccCCcccccCCCCC
Q 013152 390 GQNIASSKY----DPSSGKTWVSPSERYAVVPDDT 420 (448)
Q Consensus 390 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 420 (448)
..++++... ...++..|.+....+..+....
T Consensus 331 v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCC
Confidence 555554332 2335888888887777766554
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=6.2e-65 Score=509.11 Aligned_cols=337 Identities=26% Similarity=0.478 Sum_probs=293.7
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCC--CccCCeeecCCCCCcEEEEEccCCeeEEEEcC
Q 013152 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAE--DRLSPTQLSALDGHEIVSVTCGADHTTAYSES 89 (448)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~--~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~ 89 (448)
|...+...+|++|+||..|+++|+++|+||+||.|.+||||.+..+ ....|.++.. . .+|++|+||..|+++|+++
T Consensus 52 P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~ 129 (413)
T 1a12_A 52 PALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDD 129 (413)
T ss_dssp EEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETT
T ss_pred ceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCC
Confidence 3334456899999999999999999999999999999999998763 4667888843 3 3799999999999999999
Q ss_pred CCEEEEEeC--CCCCCcCCCCCCCc-ccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCC---
Q 013152 90 CMQVYSWGW--GDFGRLGHGNSSDL-FTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTED--- 163 (448)
Q Consensus 90 ~g~v~~wG~--n~~g~lG~g~~~~~-~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~--- 163 (448)
|+||+||. |.+||||.+..... ..|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||.+....
T Consensus 130 -G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 206 (413)
T 1a12_A 130 -GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANR 206 (413)
T ss_dssp -SCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSS
T ss_pred -CcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccc
Confidence 99999999 99999998876443 346666 4567899999999999999999999999999999999875421
Q ss_pred --------cccceeeecc-----cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCC
Q 013152 164 --------SLVPQKLQAF-----EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 164 --------~~~p~~v~~~-----~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (448)
...|+.+... ...+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.....
T Consensus 207 ~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~ 286 (413)
T 1a12_A 207 GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 286 (413)
T ss_dssp CGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTC
T ss_pred cccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCc
Confidence 2456555443 456899999999999999999999999999999999998888888888876553236
Q ss_pred eEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCC-CCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecC
Q 013152 231 KMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHG-DFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 231 ~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~-~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (448)
+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|++++.+. +|++|+||.+|+++|+++|+||+||.|
T Consensus 287 ~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 287 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCC
Confidence 79999999999999999999999999999999998 566778899998876 599999999999999999999999999
Q ss_pred CCCcccCCCCCCccCceEeecC--CCCcEEEEEcCCCeeEEEECCCCE
Q 013152 310 KFGQVGVGDNVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTERQNV 355 (448)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~h~~al~~~g~v 355 (448)
.+||||.++..+...|+++..+ ...+|++|+||.+|+++|+++|++
T Consensus 365 ~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 365 TNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999999888899998753 456899999999999999998863
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-63 Score=501.26 Aligned_cols=335 Identities=25% Similarity=0.398 Sum_probs=293.1
Q ss_pred cccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC--ccCCeeecCCCCCcEEEEEccCCeeEEEEc
Q 013152 11 ASTTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED--RLSPTQLSALDGHEIVSVTCGADHTTAYSE 88 (448)
Q Consensus 11 ~~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~ 88 (448)
.|...+...+|++|+||..|+++|++||+||+||.|.+||||++..+. ...|.++.... +|++|+||..|+++|++
T Consensus 67 ~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~ 144 (423)
T 3mvd_K 67 RLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLE 144 (423)
T ss_dssp EEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEET
T ss_pred CCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeC
Confidence 345566678899999999999999999999999999999999988764 67788887443 69999999999999999
Q ss_pred CCCEEEEEeC--CCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCC----
Q 013152 89 SCMQVYSWGW--GDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTE---- 162 (448)
Q Consensus 89 ~~g~v~~wG~--n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~---- 162 (448)
+ |+||+||. |.+||||.+...... .|++.+...+|++|+||..|+++|+++|+||+||.|.+||||.+...
T Consensus 145 ~-G~v~~wG~~~n~~GqlG~~~~~~~~--~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 221 (423)
T 3mvd_K 145 D-GRVFAWGSFRDSHGNMGLTIDGNKR--TPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISG 221 (423)
T ss_dssp T-SCEEEEECEECSSSEEESBTTBCEE--EEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTS
T ss_pred C-CeEEEEeCCCCCCCCcCcCCCCCCc--eeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccc
Confidence 9 99999999 999999998776654 44555667799999999999999999999999999999999997653
Q ss_pred -------CcccceeeecccCccEEEEEeCCCeEEEE-ecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEE
Q 013152 163 -------DSLVPQKLQAFEGVSIKMVAAGAEHSVAV-AEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVM 234 (448)
Q Consensus 163 -------~~~~p~~v~~~~~~~i~~ia~G~~~~~~l-t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~ 234 (448)
....|.++..+...+|++|+||.+|++++ +++|+||+||.|.+||||.+.......+.++.. . ..+|++
T Consensus 222 ~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~-~--~~~v~~ 298 (423)
T 3mvd_K 222 EGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT-E--LKDIRH 298 (423)
T ss_dssp CSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE-C--CCSEEE
T ss_pred ccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc-C--CCCeEE
Confidence 44578888877778999999999999999 699999999999999999966544433333321 1 358999
Q ss_pred EEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCC-ceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCc
Q 013152 235 VACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKD-HLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 235 i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (448)
|+||.+|+++|+++|+||+||.|.+||||.++..+ ...|.+++.+.+ +|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 299 ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~Gq 377 (423)
T 3mvd_K 299 IAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQ 377 (423)
T ss_dssp EEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSC
T ss_pred EEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCC
Confidence 99999999999999999999999999999998766 468888888876 7999999999999999999999999999999
Q ss_pred ccCCCCCCccCceEeec--CCCCcEEEEEcCCCeeEEEECCCC
Q 013152 314 VGVGDNVDHCSPVQVKF--PLDQKVVQISCGWRHTLAVTERQN 354 (448)
Q Consensus 314 LG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~h~~al~~~g~ 354 (448)
||.++..+...|++|.. +...+|++|+||.+|+++|+++++
T Consensus 378 LG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 378 LGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 99999999999999985 456789999999999999998764
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-62 Score=500.18 Aligned_cols=327 Identities=26% Similarity=0.489 Sum_probs=281.5
Q ss_pred CCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCC-----------------------ccCCeeecC--C---
Q 013152 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAED-----------------------RLSPTQLSA--L--- 68 (448)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~-----------------------~~~P~~v~~--~--- 68 (448)
...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|++++. +
T Consensus 65 ~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~ 144 (473)
T 3of7_A 65 DEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPL 144 (473)
T ss_dssp TTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHH
T ss_pred CCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcc
Confidence 456999999999999999999999999999999999987654 467888875 5
Q ss_pred -CCCcEEEEEccCCeeEEEEcCCCEEEEEeC--CCCCCcCCCCC--CCcccceeecccCCCCEEEEEecCceEEEEEcCC
Q 013152 69 -DGHEIVSVTCGADHTTAYSESCMQVYSWGW--GDFGRLGHGNS--SDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEG 143 (448)
Q Consensus 69 -~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~--n~~g~lG~g~~--~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G 143 (448)
.+.+|++|+||..|+++|+++ |+||+||. |..||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|
T Consensus 145 ~~~~~i~~va~G~~hs~alt~~-G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G 223 (473)
T 3of7_A 145 AEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG 223 (473)
T ss_dssp HTTCCEEEEEECSSEEEEEETT-SCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTS
T ss_pred cCCCcEEEEEccCCEEEEEeCC-CeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCC
Confidence 357899999999999999999 99999998 68899998554 3566788888888889999999999999999999
Q ss_pred cEEEEECCCCCccCCCCCCC----cccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCC----
Q 013152 144 EVQSWGRNQNGQLGLGTTED----SLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRND---- 215 (448)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~----~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~---- 215 (448)
+||+||.|.+||||.+.... ...|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999999999999987553 345555532 5799999999999999999999999999999999987642
Q ss_pred ccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCC--------------CCceeeeeeccccC
Q 013152 216 RLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDF--------------KDHLVPCQLEALRE 281 (448)
Q Consensus 216 ~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~--------------~~~~~p~~v~~~~~ 281 (448)
...|.++..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|.++..+.
T Consensus 301 ~~~P~~v~~~~--~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~- 377 (473)
T 3of7_A 301 VTKPKRLALPD--NVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP- 377 (473)
T ss_dssp EEEEEECCCCT--TCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC-
T ss_pred eeccccccccC--CccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC-
Confidence 34566665433 578999999999999999999999999999999998642 1234566666544
Q ss_pred CcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCC-CCCccCceEeecC--CCCcEEEEEcCCCeeEEEEC
Q 013152 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD-NVDHCSPVQVKFP--LDQKVVQISCGWRHTLAVTE 351 (448)
Q Consensus 282 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~-~~~~~~p~~v~~~--~~~~v~~i~~G~~h~~al~~ 351 (448)
+|++|+||.+|++||+++|+||+||.|.+||||.++ ..+...|++|+.+ ...+|++|+||..|++++..
T Consensus 378 -~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 378 -KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp -CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred -ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 599999999999999999999999999999999998 7778889999743 45679999999999999975
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.7e-53 Score=401.69 Aligned_cols=260 Identities=26% Similarity=0.420 Sum_probs=218.9
Q ss_pred ccCCCCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCC
Q 013152 12 STTAAPFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCM 91 (448)
Q Consensus 12 ~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g 91 (448)
+.+.+...+|++|+||..|+++|+ ||+||+||.|.+||||. |... ..+|++|+||..|+++|+ + |
T Consensus 17 ~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~~----~~~i~~ia~G~~hs~~l~-~-G 81 (282)
T 3qhy_B 17 TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAAT----QSGVDAIAAGNYHSLALK-D-G 81 (282)
T ss_dssp CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGGG----GSCCCEEEECSSEEEEEE-T-T
T ss_pred cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------CccC----CCCEEEEEeCCCEEEEEE-C-C
Confidence 444556679999999999999998 99999999999999995 2211 136999999999999995 7 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeee
Q 013152 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (448)
+||+||.|.+||||. |.++. .+|++|+||..|+++|+ +|+||+||.|.++||+...
T Consensus 82 ~v~~wG~n~~Gqlg~--------P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----------- 137 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV--------PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----------- 137 (282)
T ss_dssp EEEEEECCTTSTTCC--------CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG-----------
T ss_pred EEEEeeCCCCCCCCC--------CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc-----------
Confidence 999999999999984 33332 37999999999999999 9999999999999997421
Q ss_pred cccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCE
Q 013152 172 AFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRL 251 (448)
Q Consensus 172 ~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~v 251 (448)
....+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++ ..+|++|+||.+|+++| ++|+|
T Consensus 138 -~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v 200 (282)
T 3qhy_B 138 -EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKV 200 (282)
T ss_dssp -GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEE
T ss_pred -cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeE
Confidence 12346999999999999999 89999999999999983 2222 35899999999999999 89999
Q ss_pred EEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecC
Q 013152 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFP 331 (448)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~ 331 (448)
|+||.|.+||||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 201 ~~wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~-------------- 253 (282)
T 3qhy_B 201 IAWGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ-------------- 253 (282)
T ss_dssp EEEECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS--------------
T ss_pred EEEECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC--------------
Confidence 999999999998532 122 34999999999999999 999999999999998641
Q ss_pred CCCcEEEEEcCCCeeEEEECCCCEE
Q 013152 332 LDQKVVQISCGWRHTLAVTERQNVF 356 (448)
Q Consensus 332 ~~~~v~~i~~G~~h~~al~~~g~v~ 356 (448)
..|++|+||..|++||+++++.+
T Consensus 254 --~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 --SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp --SCEEEEEECSSCEEEEEC-----
T ss_pred --CCcEEEEECcCeEEEEecCCCCC
Confidence 37999999999999999987654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6.3e-52 Score=392.35 Aligned_cols=250 Identities=28% Similarity=0.469 Sum_probs=210.6
Q ss_pred eEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceee
Q 013152 39 IVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPI 118 (448)
Q Consensus 39 ~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v 118 (448)
+||+||+|...++. |.+++.+. +|++|+||..|+++|+ + |+||+||.|.+||||. |.+
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~-G~v~~wG~n~~Gqlg~--------p~~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-G-GKVLGWGANLNGQLTM--------PAA- 60 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-T-TEEEEEECCSSSTTSC--------CGG-
T ss_pred EEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-C-CEEEEEeCCCCCCCCC--------Ccc-
Confidence 69999998655442 22233333 6999999999999998 8 9999999999999994 221
Q ss_pred cccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEE
Q 013152 119 KALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELY 198 (448)
Q Consensus 119 ~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy 198 (448)
. ..+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+||
T Consensus 61 -~--~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~ 123 (282)
T 3qhy_B 61 -T--QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVI 123 (282)
T ss_dssp -G--GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEE
T ss_pred -C--CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEE
Confidence 1 237999999999999996 99999999999999985 3333 237999999999999999 99999
Q ss_pred EeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeecc
Q 013152 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEA 278 (448)
Q Consensus 199 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 278 (448)
+||.|.+|||+.. .+ ...+|++|+||.+|+++|+ +|+||+||.|.+|||+. |.++
T Consensus 124 ~wG~n~~gqlg~~--------~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~-- 178 (282)
T 3qhy_B 124 AWGDDSDGQTTVP--------AE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA-- 178 (282)
T ss_dssp EEECCTTSTTSCC--------GG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG--
T ss_pred EecCCCCCcCCCC--------cc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec--
Confidence 9999999999842 11 1347999999999999999 89999999999999983 3222
Q ss_pred ccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEE
Q 013152 279 LRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSW 358 (448)
Q Consensus 279 ~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~w 358 (448)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.. ...+|++|+||.+|+++|+ +|+||+|
T Consensus 179 --~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~-~g~v~~w 242 (282)
T 3qhy_B 179 --QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK-NGKVIAW 242 (282)
T ss_dssp --GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE-TTEEEEE
T ss_pred --CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE-CCEEEEe
Confidence 34599999999999999 899999999999999985421 1247999999999999999 9999999
Q ss_pred eCCCCCCCCC
Q 013152 359 GRGTNGQLGH 368 (448)
Q Consensus 359 G~n~~gqLG~ 368 (448)
|.|.++|++.
T Consensus 243 G~n~~gq~~v 252 (282)
T 3qhy_B 243 GSSRTAPSSV 252 (282)
T ss_dssp STTCCCCGGG
T ss_pred cCCCCccccC
Confidence 9999999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.55 E-value=0.073 Score=51.98 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=162.4
Q ss_pred CCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEe
Q 013152 18 FRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWG 97 (448)
Q Consensus 18 ~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG 97 (448)
...|..++......+.-..||.|.+|-.... + ....+.. ....|..++......+.-..| |.|..|-
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~d-g~i~vwd 199 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E----------CKRILTG-HTGSVLCLQYDERVIITGSSD-STVRVWD 199 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETT-SCEEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcC-CCCcEEEEEECCCEEEEEcCC-CeEEEEE
Confidence 4567888887777777789999999954321 1 1111111 123578888866666666677 9999996
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCcc
Q 013152 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVS 177 (448)
Q Consensus 98 ~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 177 (448)
...... ...+. .....|..++......+.-..||.|..|-....... .......-....
T Consensus 200 ~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 200 VNTGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp SSSCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred CCCCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 433211 01111 123468888888888888889999999965432110 111111112335
Q ss_pred EEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCC
Q 013152 178 IKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWS 257 (448)
Q Consensus 178 i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n 257 (448)
|..++....+.+.-..||.|..|-... ...+..+......|..++......+.-..+|.|..|-..
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTST--------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCc--------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 777777777777778899999996432 112222333345677777777777777889999999653
Q ss_pred CCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEE
Q 013152 258 KYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVV 337 (448)
Q Consensus 258 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~ 337 (448)
.... ...+. .....|..++....+.+.-..+|.|..|-......... .....+..........|.
T Consensus 325 ~~~~-----------~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 325 CGAC-----------LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA---PAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp TCCE-----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTS---CTTTTEEEEECCCSSCCC
T ss_pred CCCE-----------EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccc---cccchheeeccCCCCCeE
Confidence 2110 11111 12234777777666666777899999997532211000 000011221122234566
Q ss_pred EEEcCCCeeEEEECCCCEEEEeCCC
Q 013152 338 QISCGWRHTLAVTERQNVFSWGRGT 362 (448)
Q Consensus 338 ~i~~G~~h~~al~~~g~v~~wG~n~ 362 (448)
.++......+.-..||.|..|--..
T Consensus 390 ~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 390 RLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp CEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEeCCCEEEEEeCCCEEEEEECCC
Confidence 6666555555556789999996543
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.83 E-value=0.41 Score=46.62 Aligned_cols=267 Identities=11% Similarity=0.052 Sum_probs=156.6
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCC
Q 013152 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGD 100 (448)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~ 100 (448)
+..++.-....+.-..||.|.+|-......+ ..+.. ....|..+.......+.-..| |.|+.|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~-h~~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVG-HTGGVWSSQMRDNIIISGSTD-RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECCC-CSSCEEEEEEETTEEEEEETT-SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEcC-CCCCEEEEEecCCEEEEEeCC-CeEEEEECCc
Confidence 4455555555556668888888864321110 11111 113467777666666666777 9999996432
Q ss_pred CCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEE
Q 013152 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (448)
Q Consensus 101 ~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (448)
.. ....+. .....|..++......+.-..||.|+.|-...... ...+. .....|..
T Consensus 189 ~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~ 244 (445)
T 2ovr_B 189 GE-----------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRC 244 (445)
T ss_dssp TE-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEE
T ss_pred Cc-----------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEE
Confidence 11 011111 12346788888778888888999999996543111 01111 12335777
Q ss_pred EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCC
Q 013152 181 VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYG 260 (448)
Q Consensus 181 ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~g 260 (448)
++......+.-..+|.|+.|-... ...+..+......|..++....+.+.-..+|.|+.|-.....
T Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp EEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC
T ss_pred EEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC
Confidence 777677777778899999995321 122333333345677777767777777889999999653311
Q ss_pred CCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeec--CCCCcEEE
Q 013152 261 QLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQ 338 (448)
Q Consensus 261 qlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~v~~ 338 (448)
.+ ..+. .....+..++......+.-..+|.|..|-...... ...+.. .....|..
T Consensus 311 ~~-----------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 311 CI-----------HTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-----------LQTLQGPNKHQSAVTC 367 (445)
T ss_dssp EE-----------EEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEECSTTSCSSCEEE
T ss_pred EE-----------EEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-----------EEEEccCCCCCCCEEE
Confidence 11 1111 11223556666566666777899999997543111 111111 12346777
Q ss_pred EEcCCCeeEEEECCCCEEEEeCC
Q 013152 339 ISCGWRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 339 i~~G~~h~~al~~~g~v~~wG~n 361 (448)
++....+.++-..||.|..|-..
T Consensus 368 ~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 368 LQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEECSSEEEEEETTSEEEEEETT
T ss_pred EEECCCEEEEEeCCCeEEEEECC
Confidence 77766666677789999999643
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.49 E-value=0.69 Score=44.89 Aligned_cols=229 Identities=11% Similarity=0.065 Sum_probs=138.5
Q ss_pred cEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECC
Q 013152 72 EIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 72 ~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 151 (448)
.|..++....+.+.-..+ |.|..|-..... ....+. .....|..++......+.-..||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~d-g~i~iwd~~~~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRD-NTIKIWDKNTLE-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESS-SCEEEEESSSCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCC-CeEEEEeCCCCe-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 477777777777777777 999999543211 011111 1234688888866777777889999999754
Q ss_pred CCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCe
Q 013152 152 QNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREK 231 (448)
Q Consensus 152 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~ 231 (448)
.... ...+. .....|..++......+.-..||.|+.|-..... .......+......
T Consensus 202 ~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 202 TGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRAA 258 (435)
T ss_dssp SCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSSC
T ss_pred CCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCCc
Confidence 3211 01111 1234678888777777888899999999643211 01111122222446
Q ss_pred EEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCC
Q 013152 232 MVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKF 311 (448)
Q Consensus 232 i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~ 311 (448)
|..++....+.+.-..+|.|..|-...... ...+.. ....|..++......+.-..+|.|..|-....
T Consensus 259 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC
Confidence 777777777777778899999996432111 111111 12336666666667777788999999975431
Q ss_pred CcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeC
Q 013152 312 GQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGR 360 (448)
Q Consensus 312 GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~ 360 (448)
.+...-......|..++......+.-..||.|..|-.
T Consensus 327 ------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 327 ------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred ------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 1111111223467777776666666678999999953
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.41 E-value=0.53 Score=49.28 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.1
Q ss_pred cCceEEEEEcCCCEEEEcC
Q 013152 238 GWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 238 G~~hs~~l~~~G~vy~~G~ 256 (448)
-..|++++..++++|.+|-
T Consensus 597 R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp CBSCEEEEEETTEEEEECC
T ss_pred cccceEEEeCCCEEEEECC
Confidence 3568888877799999985
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.27 E-value=0.0099 Score=52.62 Aligned_cols=71 Identities=27% Similarity=0.459 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCC
Q 013152 282 SFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 282 ~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n 361 (448)
..|.+|+.-+.|+.++--+++++.+|++++||+-.... ..+..++.+|.++++-+..-+.+..||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 44888999999999999999999999999999954322 14678899999999999999999999975
Q ss_pred CCCC
Q 013152 362 TNGQ 365 (448)
Q Consensus 362 ~~gq 365 (448)
-...
T Consensus 376 PDNS 379 (400)
T 4gbf_A 376 PDNS 379 (400)
T ss_dssp TTST
T ss_pred CCcc
Confidence 4333
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.15 E-value=0.97 Score=47.29 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=72.3
Q ss_pred CceEEEEEc-CCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEE----EeCCCeEEEEecCCcEEEeeCCCCCC
Q 013152 133 DSHCLAVTV-EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV----AAGAEHSVAVAEDGELYGWGWGRYGN 207 (448)
Q Consensus 133 ~~h~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i----a~G~~~~~~lt~~G~vy~wG~n~~gq 207 (448)
..|++++.. +|+||.+|-.....--..+ . .+-.+.......+ ..-..|++++..+|+||++|-...
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~d-v------~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~-- 511 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSD-N------WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE-- 511 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCC-C------EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCS--
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCcccc-E------EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCC--
Confidence 368887776 8999999853321100000 0 0000111112221 123567777766999999983211
Q ss_pred CCCCCCCCccceeeeeeeccCCCeEEEEEe-------cCceE-EEEEcC-CCEEEEcCCCCCCCCCCCCCCceeeeeecc
Q 013152 208 LGLGDRNDRLIPEKVATVDLQREKMVMVAC-------GWRHT-ISVSSS-GRLYSYGWSKYGQLGHGDFKDHLVPCQLEA 278 (448)
Q Consensus 208 lg~~~~~~~~~p~~v~~~~~~~~~i~~i~~-------G~~hs-~~l~~~-G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~ 278 (448)
. . .+..++........+.. -..|+ +++..+ +++|.+|-.... +.....+... -.
T Consensus 512 --~---~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~--~~~~~~~v~~----yd 574 (695)
T 2zwa_A 512 --G---P------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD--QTTVSDKAII----FK 574 (695)
T ss_dssp --S---C------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTT--SSCBCCEEEE----EE
T ss_pred --C---C------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCC--CCeeeCcEEE----EE
Confidence 1 1 23333333344444442 33566 455655 899999953211 0000011000 00
Q ss_pred ccCCc------EEEE-----EcCCCeeEEEeCCCcEEEeec
Q 013152 279 LRESF------ISQI-----SGGWRHTMAVTSDGKLYGWGW 308 (448)
Q Consensus 279 ~~~~~------i~~I-----~~G~~h~~~lt~~G~vy~wG~ 308 (448)
+.... .+.+ ..-..|++++..+++||++|-
T Consensus 575 ~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 575 YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp ECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECC
T ss_pred ccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECC
Confidence 11111 2222 223568888877799999984
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.07 E-value=0.0093 Score=52.81 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=63.7
Q ss_pred CCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeC
Q 013152 19 RPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGW 98 (448)
Q Consensus 19 ~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~ 98 (448)
..|..|+.-..|.+++--|++++.||+++.||+-..... .+..++.+|.+|++-+..- ..+-.||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta-------------gPfla~~AG~~fTVTVn~~-nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA-------------GPYIQLAAGHNFTVTVNTL-NQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG-------------CCEEEEEECSSEEEEEETT-CCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc-------------chHHhHhccCCeEEEEece-eeEEEecC
Confidence 457778888999999999999999999999998542211 2478899999999999998 99999997
Q ss_pred CCCCCc---CCCCCCCccccee
Q 013152 99 GDFGRL---GHGNSSDLFTPLP 117 (448)
Q Consensus 99 n~~g~l---G~g~~~~~~~p~~ 117 (448)
.....| |++..-....|+|
T Consensus 375 SPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 375 SPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp CTTSTTCCTTCCSBCCCCCCCC
T ss_pred CCCcceeecCccceeeeccCCC
Confidence 654443 4444444444444
No 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.79 E-value=2.2 Score=44.17 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEE----cCCCee-EEEeCCCcEEEeecCCCCc
Q 013152 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS----GGWRHT-MAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~----~G~~h~-~~lt~~G~vy~wG~n~~Gq 313 (448)
..|++++..+|+||++|-...++. .........+. +-.+...+.+.+. .-..|+ +++..+|+||+.|.+.++.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~-~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPE-IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCE-EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceE-EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 357777778999999996443321 10101111111 1111111222222 234565 4566899999999876653
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.71 E-value=1.6 Score=42.21 Aligned_cols=230 Identities=10% Similarity=0.064 Sum_probs=138.4
Q ss_pred CCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEE
Q 013152 17 PFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSW 96 (448)
Q Consensus 17 ~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~w 96 (448)
....|..++......+.-..||.|.+|-.... + ....+.. ....|..+.......+....+ |.|+.|
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~d-g~i~~w 224 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRD-ATLRVW 224 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E----------EEEEECC-CSSCEEEEEEETTEEEEEETT-SEEEEE
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c----------EEEEECC-CCCcEEEEEecCCEEEEEeCC-CEEEEE
Confidence 34567777766666666678899999954321 0 0111111 123577777777777777777 999999
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecc--c
Q 013152 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--E 174 (448)
Q Consensus 97 G~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~ 174 (448)
-..... +..........|..++......+.-..||.|+.|-.... ..+..+ .
T Consensus 225 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~ 278 (445)
T 2ovr_B 225 DIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGH 278 (445)
T ss_dssp ESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCC
T ss_pred ECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCC
Confidence 643211 111111123467777777777777888999999964321 111111 2
Q ss_pred CccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEE
Q 013152 175 GVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (448)
Q Consensus 175 ~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (448)
...|..++....+.+.-..||.|+.|-.... ..+..+......+..++......+.-..+|.|+.|
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 2357777777777777788999999964321 11222222234566666666777777889999999
Q ss_pred cCCCCCCCCCCCCCCceeeeeecc--ccCCcEEEEEcCCCeeEEEeCCCcEEEeecCC
Q 013152 255 GWSKYGQLGHGDFKDHLVPCQLEA--LRESFISQISGGWRHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 255 G~n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~ 310 (448)
-...... ...+.. .....|..++....+.+.-..+|.|..|-...
T Consensus 345 d~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 345 DIKTGQC-----------LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp ETTTCCE-----------EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred ECCCCcE-----------EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 6432111 111111 12234777777777777778899999997543
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.84 E-value=4.2 Score=41.93 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEE----cCCCeeEE-EECCCCEEEEeCCCCC
Q 013152 291 WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQIS----CGWRHTLA-VTERQNVFSWGRGTNG 364 (448)
Q Consensus 291 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~----~G~~h~~a-l~~~g~v~~wG~n~~g 364 (448)
..|++++..+|+||+.|-...++. .........+...... ..+...+. .-.+|+++ +..+|+||..|.+.++
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~-t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPE-QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGG-GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCC-CCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 457778888999999985443321 1111111222222211 12222221 12457654 5589999999987665
No 23
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.13 E-value=3.5 Score=37.96 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=120.1
Q ss_pred CcEEEEEccCC----eeEE-EEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCC
Q 013152 71 HEIVSVTCGAD----HTTA-YSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEG 143 (448)
Q Consensus 71 ~~i~~v~~G~~----~~~~-l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G 143 (448)
..|..++...+ ..++ -..+ |.|..|-....++ .....+.. ....|..++... .+.+....||
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 56888887765 3333 3455 9999996543211 11111111 233677776643 4566667899
Q ss_pred cEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEe--CCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccce
Q 013152 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA--GAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (448)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~--G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 219 (448)
.|..|-..... ...+.. ....|..++. ..+ ..+.-..||.|+.|-....
T Consensus 109 ~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------------- 161 (368)
T 3mmy_A 109 TAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-------------- 161 (368)
T ss_dssp EEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS--------------
T ss_pred cEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC--------------
Confidence 99999654321 111111 2335777764 333 3444467899999953221
Q ss_pred eeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeecccc--CCcEEEEEcCCCe----
Q 013152 220 EKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR--ESFISQISGGWRH---- 293 (448)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~h---- 293 (448)
..+..+.. ...+..+..-....++...++.++.|-...... ....+.... ...+..+......
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 162 NPMMVLQL-PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp SCSEEEEC-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred cEEEEEec-CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCe
Confidence 01111111 124555566666777888889999886533211 011111111 1123333333333
Q ss_pred eEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-----------CCcEEEEEcCCC--eeEEEECCCCEEEEeC
Q 013152 294 TMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-----------DQKVVQISCGWR--HTLAVTERQNVFSWGR 360 (448)
Q Consensus 294 ~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-----------~~~v~~i~~G~~--h~~al~~~g~v~~wG~ 360 (448)
.+.-..+|.|..|-....... .....+.... ...|..++.... ..+.-..||.|+.|=.
T Consensus 231 ~~~~~~dg~i~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINPPNPA--------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp EEEEETTSEEEEEESSCSCHH--------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EEEecCCCcEEEEecCCCCcc--------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 566678999999976543110 0000111000 014666655433 4444558999999965
Q ss_pred C
Q 013152 361 G 361 (448)
Q Consensus 361 n 361 (448)
.
T Consensus 303 ~ 303 (368)
T 3mmy_A 303 D 303 (368)
T ss_dssp T
T ss_pred C
Confidence 3
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.08 E-value=3.6 Score=37.91 Aligned_cols=305 Identities=12% Similarity=0.057 Sum_probs=144.3
Q ss_pred CCCCEEEEeeC------CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCC-CCCcEEEEEccCC------ee
Q 013152 17 PFRPVLLISAG------ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGAD------HT 83 (448)
Q Consensus 17 ~~~~i~~i~~G------~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~-~~~~i~~v~~G~~------~~ 83 (448)
-...|..|+.- ....++-..++.|.+|-......+ ......... ....|..++.... ..
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 35677777765 445666778889999965432111 000001110 1234666555433 44
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CceEEEEEcCCcEEEEECCCCCccCCCC
Q 013152 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (448)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (448)
+.-..+ |.|..|-..... ....+. .....|..++.. ....+.-..||.|+.|-......
T Consensus 89 ~~~~~d-g~i~v~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 150 (366)
T 3k26_A 89 AVAGSR-GIIRIINPITMQ-----------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL----- 150 (366)
T ss_dssp EEEETT-CEEEEECTTTCC-----------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----
T ss_pred EEecCC-CEEEEEEchhce-----------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----
Confidence 445566 999999543211 011111 123467777764 35566667899999996543110
Q ss_pred CCCcccceeee--cccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCC-------CCCC--CCccce-----eee
Q 013152 161 TEDSLVPQKLQ--AFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLG-------LGDR--NDRLIP-----EKV 222 (448)
Q Consensus 161 ~~~~~~p~~v~--~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg-------~~~~--~~~~~p-----~~v 222 (448)
...+. ......|..++.. ....+.-..+|.|+.|-......+. .... ...... ...
T Consensus 151 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 151 ------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp ------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred ------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 11111 1123357777654 3445555678999999654311000 0000 000000 001
Q ss_pred eeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccc--cCCcEEEEEc--C--CCeeEE
Q 013152 223 ATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISG--G--WRHTMA 296 (448)
Q Consensus 223 ~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~--~~~~i~~I~~--G--~~h~~~ 296 (448)
.........|..++......+.-..+|.|+.|-.....+.-............+..+ ....|..++. - ....+.
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 111112334555555456666777889999997543322110000000001111111 1111222222 2 344555
Q ss_pred EeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-CCcEEEEEcCC--CeeEEEECCCCEEEEeC
Q 013152 297 VTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISCGW--RHTLAVTERQNVFSWGR 360 (448)
Q Consensus 297 lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i~~G~--~h~~al~~~g~v~~wG~ 360 (448)
-..+|.|+.|-......+. .....+.... ...|..++... ...+.-..||.|+.|--
T Consensus 305 ~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHK-------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSCEEEEECCSSSGGG-------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EecCCcEEEEECCCCCCcc-------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 6778999999765421110 0111122111 35676666543 34445568899998853
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.06 E-value=3.4 Score=37.55 Aligned_cols=276 Identities=9% Similarity=0.019 Sum_probs=136.4
Q ss_pred eeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCe-eEEEEcCCCEEEEEeCCCCCC
Q 013152 25 SAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADH-TTAYSESCMQVYSWGWGDFGR 103 (448)
Q Consensus 25 ~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~-~~~l~~~~g~v~~wG~n~~g~ 103 (448)
..+.-..+++..||++++.+......+...... ...+..... -...|..++...+. .++...+ |.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~d-g~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLN-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEEC-CSSCCCEEEECSSSSEEEEECB-SEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceecc-CCCceEEEEEecCCcEEEEcCC-CeEEEEECCCCCc
Confidence 344567788899999998887554433221111 111111111 12345555554332 3333445 9999996543221
Q ss_pred cCCCCCCCcccceeecc-cCCCCEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEE
Q 013152 104 LGHGNSSDLFTPLPIKA-LHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKM 180 (448)
Q Consensus 104 lG~g~~~~~~~p~~v~~-l~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ 180 (448)
. . ....+.. .....|..++... ...+....+|.|+.|-..... .............|..
T Consensus 85 ~------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 85 K------S--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAPACYA 146 (337)
T ss_dssp C------S--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEE
T ss_pred e------e--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCCceEE
Confidence 1 0 0011110 1233566666553 345555678999999653311 0011111112234666
Q ss_pred EEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec--CceEEEEEcCCCEEEEcC
Q 013152 181 VAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 181 ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (448)
++.. ..+.+.-..+|.|+.|-... ...+..+......|..++.. ....+....+|.|+.|-.
T Consensus 147 ~~~~~~~~~l~~~~~dg~v~~~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCC--------------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 6554 34455566789999996432 11122222223456666553 334555567888999864
Q ss_pred CCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCC
Q 013152 257 SKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQ 334 (448)
Q Consensus 257 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~ 334 (448)
.... ....... ...+..++.. ....++-..+|.|+.|-..... ...+. ....
T Consensus 213 ~~~~-----------~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~-~~~~ 266 (337)
T 1gxr_A 213 REGR-----------QLQQHDF--TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLH-LHES 266 (337)
T ss_dssp TTTE-----------EEEEEEC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEEC-CCSS
T ss_pred CCCc-----------eEeeecC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEc-CCcc
Confidence 3211 1111111 1225555432 3344455667888888654321 11111 2234
Q ss_pred cEEEEEcC--CCeeEEEECCCCEEEEeCC
Q 013152 335 KVVQISCG--WRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 335 ~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (448)
.|..++.. ....++...+|.|+.|-..
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 56666554 3344455678899999653
No 26
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.79 E-value=4.7 Score=38.27 Aligned_cols=265 Identities=11% Similarity=0.049 Sum_probs=135.0
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCEEEEEeCCCC
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDF 101 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~ 101 (448)
++-...+.++...||.|+.|-....- ....+.......|..++... .+.++-..+ |.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGN-GLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCC-CeEEEEECcCC
Confidence 55556778888899999999754321 11112211233466666543 344455566 99999964322
Q ss_pred CCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEE
Q 013152 102 GRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMV 181 (448)
Q Consensus 102 g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i 181 (448)
.. ...+. .....|..++......+....+|.|+.|-...... ....+.. ....|..+
T Consensus 167 ~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~-~~~~v~~~ 223 (401)
T 4aez_A 167 TK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQG-HSSEVCGL 223 (401)
T ss_dssp CE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEEC-CSSCEEEE
T ss_pred eE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcC-CCCCeeEE
Confidence 11 11111 12346888888777778888999999997543211 0111111 22356666
Q ss_pred EeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--ceEEEEE---cCCCEEEE
Q 013152 182 AAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVS---SSGRLYSY 254 (448)
Q Consensus 182 a~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~---~~G~vy~~ 254 (448)
+... .+.+.-..||.|+.|-.... ..+..+......|..++... .+.++.. .+|.|+.|
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSS--------------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCS--------------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCC--------------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 6543 34555567899999964321 11111221223444444432 2333333 47888888
Q ss_pred cCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEe----CCCcEEEeecCCCCcccCCCCCCccCce-Eee
Q 013152 255 GWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVT----SDGKLYGWGWNKFGQVGVGDNVDHCSPV-QVK 329 (448)
Q Consensus 255 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt----~~G~vy~wG~n~~GqLG~g~~~~~~~p~-~v~ 329 (448)
-..... ....+. ....|..++.......++. .+|.|+.|-..... ..+. .+.
T Consensus 290 d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~----------~~~~~~~~ 346 (401)
T 4aez_A 290 NAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG----------LTKQVDIP 346 (401)
T ss_dssp ETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE----------EEEEEEEE
T ss_pred ECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc----------ceeEEEec
Confidence 543211 011111 1233666665433332222 58889988754311 0111 111
Q ss_pred cCCCCcEEEEEcC--CCeeEEEECCCCEEEEeCC
Q 013152 330 FPLDQKVVQISCG--WRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 330 ~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (448)
.....|..++.. ..+.+....||.|..|=-.
T Consensus 347 -~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 347 -AHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp -CCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred -CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 112345555443 3334444578888888643
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.22 E-value=4.5 Score=36.28 Aligned_cols=270 Identities=13% Similarity=0.032 Sum_probs=138.8
Q ss_pred CCCCCEEEEeeC-CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCE
Q 013152 16 APFRPVLLISAG-ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQ 92 (448)
Q Consensus 16 ~~~~~i~~i~~G-~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~ 92 (448)
.-...|..++.- ....+.-..||.|.+|-.... .....+... ...|..++.. ..+.+.-..+ |.
T Consensus 16 ~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-g~ 82 (313)
T 3odt_A 16 GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD-TM 82 (313)
T ss_dssp CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-SC
T ss_pred CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCC-Ce
Confidence 345667777652 223444458899999964221 111112111 2235554433 3444555566 88
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeec
Q 013152 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (448)
Q Consensus 93 v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (448)
|..|-...... ..+..........|..++......+....+|.|+.|-... +.....
T Consensus 83 i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~--------------~~~~~~ 139 (313)
T 3odt_A 83 INGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS--------------LVYNLQ 139 (313)
T ss_dssp EEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTE--------------EEEEEE
T ss_pred EEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCc--------------EEEecc
Confidence 88885433210 0111111112346788888777888888999999995110 111111
Q ss_pred ccCccEEEEEe---CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeecc-CCCeEEEEEecC-ceEEEEEc
Q 013152 173 FEGVSIKMVAA---GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL-QREKMVMVACGW-RHTISVSS 247 (448)
Q Consensus 173 ~~~~~i~~ia~---G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~-~~~~i~~i~~G~-~hs~~l~~ 247 (448)
.....|..+.. .....+.-..+|.|+.|-.. ..+..+.. ....+..++... ...++-..
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 12234544443 45666777789999999411 11111111 233444444322 23555667
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCC-eeEEEeCCCcEEEeecCCCCcccCCCCCCccCce
Q 013152 248 SGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPV 326 (448)
Q Consensus 248 ~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~ 326 (448)
+|.|+.|-...... ...+. .....|..++.... ..++-..+|.|+.|-.... .+.
T Consensus 204 dg~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~ 259 (313)
T 3odt_A 204 DGLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLK 259 (313)
T ss_dssp TSEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEE
T ss_pred CCeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------cee
Confidence 88899986532111 11111 12234666665433 4556678899999964331 111
Q ss_pred EeecCCCCcEEEEEcCCC-eeEEEECCCCEEEEeCC
Q 013152 327 QVKFPLDQKVVQISCGWR-HTLAVTERQNVFSWGRG 361 (448)
Q Consensus 327 ~v~~~~~~~v~~i~~G~~-h~~al~~~g~v~~wG~n 361 (448)
..-......|..++...+ ..++-..||.|+.|=..
T Consensus 260 ~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 260 QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 211122346666665433 35556789999999653
No 28
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=93.16 E-value=5.6 Score=37.24 Aligned_cols=250 Identities=14% Similarity=0.044 Sum_probs=123.1
Q ss_pred CCCCCEEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC---------CeeEEE
Q 013152 16 APFRPVLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---------DHTTAY 86 (448)
Q Consensus 16 ~~~~~i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~---------~~~~~l 86 (448)
.-...|..|+......+.-..||.|++|-...... .........+... ...|..++... .+.+..
T Consensus 14 ~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 14 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEE
Confidence 34567888888776666666899999997543210 0001111222211 23466665543 234444
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccC----CCCEEEEEec------Cce-EEEEEcCCcEEEEECCC---
Q 013152 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH----SLRVKQIACG------DSH-CLAVTVEGEVQSWGRNQ--- 152 (448)
Q Consensus 87 ~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~----~~~i~~I~~G------~~h-~~~lt~~G~vy~wG~n~--- 152 (448)
..+ |.|+.|-...... ........+.... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 88 ~~d-g~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 88 SFS-GDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp ETT-SCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cCC-CCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 556 9999996432211 0000012222221 2467777655 344 55667899999996543
Q ss_pred ---CCccCCCCCCCcccce-eee------cccCccEEEEEeCCC-eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceee
Q 013152 153 ---NGQLGLGTTEDSLVPQ-KLQ------AFEGVSIKMVAAGAE-HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK 221 (448)
Q Consensus 153 ---~gqlG~~~~~~~~~p~-~v~------~~~~~~i~~ia~G~~-~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 221 (448)
...+ ...|. .+. ......|..++...+ ..+.-..+|.|+.|-... ...
T Consensus 161 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------~~~ 219 (397)
T 1sq9_A 161 ESNSLTL-------NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST--------------LRP 219 (397)
T ss_dssp HHHHTTT-------CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT--------------TEE
T ss_pred cccccee-------eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCC--------------Cce
Confidence 1111 01111 111 112334556655443 444445688899986432 111
Q ss_pred eeeecc---C---CCeEEEEEec--CceEEEEEcC---CCEEEEcCCCCCCCCCCCCCCceeeeeeccc-----------
Q 013152 222 VATVDL---Q---REKMVMVACG--WRHTISVSSS---GRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL----------- 279 (448)
Q Consensus 222 v~~~~~---~---~~~i~~i~~G--~~hs~~l~~~---G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~----------- 279 (448)
+..+.. . ...|..++.. ..+.++-..+ |.|+.|-...... ...+...
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~ 288 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----------IGSLSVPTHSSQASLGEF 288 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----------EEEECBC--------CCB
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----------cceeccCccccccccccc
Confidence 222222 1 3356665543 3344445566 7888886432211 1111110
Q ss_pred -cCCcEEEEEcC--CCeeEEEeCCCcEEEeecCC
Q 013152 280 -RESFISQISGG--WRHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 280 -~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~ 310 (448)
....|..++.. ....+.-..+|.|+.|-...
T Consensus 289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 22346666654 33445556788999997543
No 29
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.61 E-value=7.7 Score=37.39 Aligned_cols=278 Identities=10% Similarity=0.113 Sum_probs=145.1
Q ss_pred EEEEeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCC-eeEEEEcCCCEEEEEeCC
Q 013152 21 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-HTTAYSESCMQVYSWGWG 99 (448)
Q Consensus 21 i~~i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~-~~~~l~~~~g~v~~wG~n 99 (448)
+..++......+.-..||.|.+|-..... ....+..- ...|..++...+ ..+.-..| |.|..|-..
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-----------~~~~~~~h-~~~V~~l~~~~~~~l~s~s~d-g~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKK-----------FLLQLSGH-DGGVWALKYAHGGILVSGSTD-RTVRVWDIK 191 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECCC-SSCEEEEEECSTTEEEEEETT-SCEEEEETT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCc-----------EEEEEeCC-CcCEEEEEEcCCCEEEEEeCC-CCEEEEECC
Confidence 45556555666666788999999643210 01111111 235777766543 44444556 999999643
Q ss_pred CCCCcCCCCCCCcccceeecccCCCCEEEEEec----CceEEEEEcCCcEEEEECCCCCccCCCCCCC---------ccc
Q 013152 100 DFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG----DSHCLAVTVEGEVQSWGRNQNGQLGLGTTED---------SLV 166 (448)
Q Consensus 100 ~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---------~~~ 166 (448)
... ....+.. ....|..++.. ....+.-+.||.|..|-.............. ...
T Consensus 192 ~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 192 KGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp TTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred CCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 211 1111111 12356655543 2556667789999999765432221100000 000
Q ss_pred ceeeecc--cCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--ceE
Q 013152 167 PQKLQAF--EGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHT 242 (448)
Q Consensus 167 p~~v~~~--~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs 242 (448)
+..+..+ ....|..++......+.-..+|.|+.|-... ...+..+......|..++... ...
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ--------------MKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC--------------CcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 0011111 1235677777677777788899999996422 112222222234565555543 355
Q ss_pred EEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCc
Q 013152 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (448)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 322 (448)
+.-..+|.|+.|-... ++ ....+. .....|..++....+.+.-..||.|..|-.....+
T Consensus 326 ~sg~~dg~i~vwd~~~-~~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~--------- 384 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN-GE----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR--------- 384 (464)
T ss_dssp EEEETTSCEEEEETTT-TE----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE---------
T ss_pred EEEeCCCcEEEEECCC-Cc----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce---------
Confidence 5667788899886422 11 111111 12234777777777777778999999997654211
Q ss_pred cCceEeecCCCCcEEEEEcCCCeeEEEECCCCEEEEeCC
Q 013152 323 CSPVQVKFPLDQKVVQISCGWRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 323 ~~p~~v~~~~~~~v~~i~~G~~h~~al~~~g~v~~wG~n 361 (448)
...........+..+..... .++...+|.|+.|=..
T Consensus 385 --~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 385 --KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLR 420 (464)
T ss_dssp --EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETT
T ss_pred --eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECC
Confidence 11222222234445555443 3444458889999643
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=91.96 E-value=7.4 Score=35.69 Aligned_cols=200 Identities=13% Similarity=0.085 Sum_probs=93.8
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCEE
Q 013152 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~v 93 (448)
...|..++..... .+.-..||.|++|-.... .....+... ...|..++.. ..+.+....+ |.|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-g~i 98 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDGH-TGTIWSIDVDCFTKYCVTGSAD-YSI 98 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECCC-SSCEEEEEECTTSSEEEEEETT-TEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhhc-CCcEEEEEEcCCCCEEEEEeCC-CeE
Confidence 4556666654333 333346788888853221 111112211 2346666654 3445555566 999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcC-----CcEEEEECCCCCccCCCCCCCccc
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVE-----GEVQSWGRNQNGQLGLGTTEDSLV 166 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~-----G~vy~wG~n~~gqlG~~~~~~~~~ 166 (448)
+.|-...... ...+. ....|..++... ...++...+ |.|+.|-.........-.......
T Consensus 99 ~iwd~~~~~~-----------~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 99 KLWDVSNGQC-----------VATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EEEETTTCCE-----------EEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EEEECCCCcE-----------EEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9996432211 01111 233566665443 444555555 888888644322111000000000
Q ss_pred ceeeecc-cCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec--Cce
Q 013152 167 PQKLQAF-EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRH 241 (448)
Q Consensus 167 p~~v~~~-~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~h 241 (448)
...+... ....+..++.. ....++-..+|.|+.|-.... ...+..+......|..++.. ..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCE
Confidence 0111111 11145555443 334555567899999964221 11222222223456666553 334
Q ss_pred EEEEEcCCCEEEEcC
Q 013152 242 TISVSSSGRLYSYGW 256 (448)
Q Consensus 242 s~~l~~~G~vy~~G~ 256 (448)
.+....+|.|+.|-.
T Consensus 233 l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 233 FITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEecCCceEEEEEC
Confidence 445567888888854
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.94 E-value=7.4 Score=35.68 Aligned_cols=260 Identities=10% Similarity=0.049 Sum_probs=122.2
Q ss_pred CCCEEEEeeCCC------ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC---CeeEEEEc
Q 013152 18 FRPVLLISAGAS------HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA---DHTTAYSE 88 (448)
Q Consensus 18 ~~~i~~i~~G~~------~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~---~~~~~l~~ 88 (448)
...|..++.... ..+.-..||.|.+|-.... .....+.. ....|..++... ...+....
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~ 136 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-----------QCIKHYVG-HGNAINELKFHPRDPNLLLSVSK 136 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-----------CEEEEEES-CCSCEEEEEECSSCTTEEEEEET
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-----------eEeeeecC-CCCcEEEEEECCCCCCEEEEEeC
Confidence 345666655433 3444558888888854321 01111221 123577777643 44555556
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCcccceeec--ccCCCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccC-------
Q 013152 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLG------- 157 (448)
Q Consensus 89 ~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~--~l~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG------- 157 (448)
+ |.|+.|-..... ....+. ......|..++.. ..+.+....||.|+.|-......+.
T Consensus 137 d-g~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 137 D-HALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp T-SCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred C-CeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 6 999999643211 111111 1123467777765 3456666789999999754321110
Q ss_pred CCCCC--------Ccccce-eeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccC
Q 013152 158 LGTTE--------DSLVPQ-KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (448)
Q Consensus 158 ~~~~~--------~~~~p~-~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~ 228 (448)
..... ....|. .........|..++......+.-..+|.|+.|-.....+.-............+..+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 00000 000000 000002234555555466777777899999997543222111011111111222222222
Q ss_pred CCeEEEEEec----CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeecccc-CCcEEEEEcC--CCeeEEEeCCC
Q 013152 229 REKMVMVACG----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALR-ESFISQISGG--WRHTMAVTSDG 301 (448)
Q Consensus 229 ~~~i~~i~~G----~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~-~~~i~~I~~G--~~h~~~lt~~G 301 (448)
...|..++.. ..+.+.-..+|.|+.|-......+ ......+.... ...|..++.. ....+.-..||
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 357 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCC
Confidence 2233333322 344555567889999875332111 00111122111 2346666654 33445556788
Q ss_pred cEEEeec
Q 013152 302 KLYGWGW 308 (448)
Q Consensus 302 ~vy~wG~ 308 (448)
.|+.|-.
T Consensus 358 ~i~iwd~ 364 (366)
T 3k26_A 358 SIWRWDR 364 (366)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8888853
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=89.62 E-value=11 Score=33.63 Aligned_cols=186 Identities=11% Similarity=0.080 Sum_probs=101.9
Q ss_pred CcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe---cCceEEEEEcCCcEEE
Q 013152 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC---GDSHCLAVTVEGEVQS 147 (448)
Q Consensus 71 ~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~---G~~h~~~lt~~G~vy~ 147 (448)
..|..++......+....+ |.|+.|- .+ .+..........+..+.. .....+....+|.|+.
T Consensus 105 ~~i~~~~~~~~~l~~~~~d-~~i~~~d---~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD-KTAKVWK---EG-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETT-SEEEEEE---TT-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCC-CCEEEEc---CC-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 4577788777777777777 9999994 10 111111112335655543 5667777788999999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC-CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeec
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVD 226 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~ 226 (448)
|-... ....+.......|..++... ...++-..+|.|+.|-.... ..+..+.
T Consensus 170 ~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~ 222 (313)
T 3odt_A 170 WQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYE 222 (313)
T ss_dssp EETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEE
T ss_pred EecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhh
Confidence 95211 11111111233455554432 23556678899999964321 1222222
Q ss_pred cCCCeEEEEEecCc-eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCC-eeEEEeCCCcEE
Q 013152 227 LQREKMVMVACGWR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTSDGKLY 304 (448)
Q Consensus 227 ~~~~~i~~i~~G~~-hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~~G~vy 304 (448)
.....|..++...+ ..++...+|.|+.|-....- +..........|..++...+ ..++-..+|.|+
T Consensus 223 ~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS------------LKQVITLPAISIWSVDCMSNGDIIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC------------EEEEEECSSSCEEEEEECTTSCEEEEETTSCEE
T ss_pred cCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc------------eeEEEeccCceEEEEEEccCCCEEEEeCCCcEE
Confidence 22345666665433 45566778899999643211 11111122234666665433 355667889999
Q ss_pred EeecCC
Q 013152 305 GWGWNK 310 (448)
Q Consensus 305 ~wG~n~ 310 (448)
.|-...
T Consensus 291 iw~~~~ 296 (313)
T 3odt_A 291 IFSQEK 296 (313)
T ss_dssp EEESCG
T ss_pred EEeCCC
Confidence 997553
No 33
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=89.38 E-value=15 Score=34.76 Aligned_cols=224 Identities=9% Similarity=0.022 Sum_probs=117.3
Q ss_pred EEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEEEECCC
Q 013152 75 SVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 75 ~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~ 152 (448)
.+.......++...+ +.|+.|-..... ....+.......|..++... .+.++-..+|.|..|-...
T Consensus 98 ~~~~s~~~l~~~~~d-~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 98 LLDWSNLNVVAVALE-RNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp CEEECTTSEEEEEET-TEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeecCCCEEEEECC-CeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 355555667777888 999999654321 11112211234577776543 4556667799999996543
Q ss_pred CCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeE
Q 013152 153 NGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (448)
Q Consensus 153 ~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (448)
... ...+. .....|..++......+.-..+|.|+.|-....+ ..+..+......|
T Consensus 166 ~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~~~~v 220 (401)
T 4aez_A 166 QTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-------------HQIGTLQGHSSEV 220 (401)
T ss_dssp CCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCSSCE
T ss_pred CeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-------------ceeeEEcCCCCCe
Confidence 211 11111 1233677777766777777889999999643211 1111222223456
Q ss_pred EEEEec--CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC--CeeEEEe---CCCcEEE
Q 013152 233 VMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVT---SDGKLYG 305 (448)
Q Consensus 233 ~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~~~lt---~~G~vy~ 305 (448)
..++.. ..+.+.-..+|.|+.|-..... +..........|..++... .+.++.. .+|.|+.
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSI------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCSS------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCCC------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 665553 3345555678999999653211 1111111122355554432 3344433 5889999
Q ss_pred eecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEE--E--CCCCEEEEeC
Q 013152 306 WGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV--T--ERQNVFSWGR 360 (448)
Q Consensus 306 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al--~--~~g~v~~wG~ 360 (448)
|-....-. ...+. ....|..++.......++ . .+|.|+.|=.
T Consensus 289 ~d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 289 WNAATGAR-----------VNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EETTTCCE-----------EEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EECCCCCE-----------EEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 96543111 11111 234566665543332222 2 5788888854
No 34
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.28 E-value=16 Score=35.09 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=141.6
Q ss_pred CCCCEEEEeeCCC-ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc----CCeeEEEEcCCC
Q 013152 17 PFRPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG----ADHTTAYSESCM 91 (448)
Q Consensus 17 ~~~~i~~i~~G~~-~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G----~~~~~~l~~~~g 91 (448)
-...|..++.... ..+.-..||.|.+|--.... ....+... ...|..++.. ..+.+.-..+ |
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d-~ 227 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-----------CTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRD-N 227 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE-----------EEEEECCC-SSCEEEEEEEESSSCEEEEEEETT-S
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc-----------EEEEECCC-CCccEEEEEecCCCCCEEEEEcCC-C
Confidence 3456677765433 33444578888888543210 11111111 1345555443 2344555566 9
Q ss_pred EEEEEeCCCCCCcCCCCCC---C------cccceeeccc--CCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCC
Q 013152 92 QVYSWGWGDFGRLGHGNSS---D------LFTPLPIKAL--HSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~---~------~~~p~~v~~l--~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (448)
.|..|-............. . ...+..+..+ ....+..++......+.-..||.|+.|-......
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~----- 302 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC----- 302 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-----
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence 9999975543322110000 0 0001011111 2335777777777888888999999996533110
Q ss_pred CCCcccceeeecccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec
Q 013152 161 TEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG 238 (448)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G 238 (448)
...+. .....|..++... ...+.-..||.|+.|-... ...+..+......|..++..
T Consensus 303 ------~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 303 ------LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN--------------GELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp ------EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEC
T ss_pred ------EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------CcEEEEEeCCCCcEEEEEEc
Confidence 01111 1123466655543 3556667789999996422 12233333334567777777
Q ss_pred CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCC
Q 013152 239 WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGD 318 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~ 318 (448)
..+.+.-..+|.|..|-.....+ ...........+..+..... .++...+|.|+.|-....-
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~g~------ 423 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGK------ 423 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETTTCC------
T ss_pred CCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECCCCc------
Confidence 77888888999999996543211 11111111222444444433 4444458888888654321
Q ss_pred CCCccCceEe-ecCCCCcEEEEEcCCCeeEE-EECCCCEEEE
Q 013152 319 NVDHCSPVQV-KFPLDQKVVQISCGWRHTLA-VTERQNVFSW 358 (448)
Q Consensus 319 ~~~~~~p~~v-~~~~~~~v~~i~~G~~h~~a-l~~~g~v~~w 358 (448)
++.. .......|.+++.-....++ ..++|.++.|
T Consensus 424 ------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 424 ------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ------EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ------EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 1111 11223456666654444333 3456666655
No 35
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.97 E-value=13 Score=33.68 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=115.3
Q ss_pred CCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC---CCeEEEEecCCcE
Q 013152 123 SLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGEL 197 (448)
Q Consensus 123 ~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~~~~~lt~~G~v 197 (448)
+..+..+... .++.+++|++|++|.--........ .. .+ .-++++|+.+.+- ....+++|++|.+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~------~~---~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS------KV---SL-KSREEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE------EC---CC-SSTTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc------cc---cc-CCCCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 4456555433 4568999999999976432210000 00 02 2246678888662 2568899999998
Q ss_pred EEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEe--cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeee
Q 013152 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ 275 (448)
Q Consensus 198 y~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 275 (448)
.-.-..++-+-. .......+. .+..++.+.. +..+.++++++|++|.+-..+.-.+|....-. + .
T Consensus 93 Kr~~l~~~~~~~--------~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv---~-~ 159 (276)
T 3no0_A 93 KKIPLAEFEYKA--------QGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV---Q-G 159 (276)
T ss_dssp EEEEGGGTTTCS--------TTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE---E-C
T ss_pred EEEEHHHhhhhc--------CCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE---E-E
Confidence 877654442110 001111111 1234444332 45578999999999998665544443322111 1 1
Q ss_pred eccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEE--EcCCCeeEEEEC
Q 013152 276 LEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQI--SCGWRHTLAVTE 351 (448)
Q Consensus 276 v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i--~~G~~h~~al~~ 351 (448)
+..-.+.+|+.+... ..+.+++|++|.+.-.=..++-..+.+... +..- ..+..++.+ ..+....+++++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~~i-~~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TEVS-GTKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EECC-CSSSCEEEEEEESSEEEEEEEET
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eEEE-cCCCcEEEEEEeCCCCEEEEEcC
Confidence 222233456655432 346778889988777665544332221110 0100 222344443 235567888999
Q ss_pred CCCEEE--EeCCCCCCCC
Q 013152 352 RQNVFS--WGRGTNGQLG 367 (448)
Q Consensus 352 ~g~v~~--wG~n~~gqLG 367 (448)
+|.+.- +--++--.+|
T Consensus 234 ~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLST 251 (276)
T ss_dssp TSCEEEEEEEGGGSCBCC
T ss_pred CCeEEEeeeCHHHCCCcC
Confidence 999988 7554444444
No 36
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.73 E-value=16 Score=33.14 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=118.8
Q ss_pred CCCCEEEEeeC--CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc---CCeeEEEEcCCC
Q 013152 17 PFRPVLLISAG--ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (448)
Q Consensus 17 ~~~~i~~i~~G--~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G---~~~~~~l~~~~g 91 (448)
....+..+... ..+.+++|++|++|.---.+ |- .. .... + .-++..|+.+.+- ..+.+++|++ |
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp--~~-~~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~-G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---AL--QG-SKVS---L-KSREEKIVGAFIREKFGNRLLLATKK-G 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HH--TS-EECC---C-SSTTCCEEEEEEGGGSCSEEEEEETT-S
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---Cc--cC-cccc---c-CCCCCEEEEEECCcCCCCEEEEEeCC-C
Confidence 44556665544 44588999999999542111 10 00 0000 3 2345678887652 3467888888 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCceEEEEEcCCcEEEEECCCCCccCCCCCCCccccee
Q 013152 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (448)
.+.-.-..++.+- .. -...+..-.+..++.+.. +.++.+++|++|++|.+-.......|....-.. .
T Consensus 91 ~iKr~~l~~~~~~----~~---G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~ 159 (276)
T 3no0_A 91 YVKKIPLAEFEYK----AQ---GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----G 159 (276)
T ss_dssp EEEEEEGGGTTTC----ST---TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----C
T ss_pred EEEEEEHHHhhhh----cC---CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----E
Confidence 9888765554310 00 111122223445665543 456799999999999997665544443322111 1
Q ss_pred eecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE--ecCceEEEE
Q 013152 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA--CGWRHTISV 245 (448)
Q Consensus 170 v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~--~G~~hs~~l 245 (448)
+..-++.+|+.+... ....+++|++|.+.-.-..++-..+.+..... .+ ..+.+++.+. .+....+++
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~-------~i-~~~~~lv~~~~~~~~~~i~~~ 231 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTE-------VS-GTKDTLVDLIPIKEEVELLIT 231 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE-------CC-CSSSCEEEEEEESSEEEEEEE
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceE-------EE-cCCCcEEEEEEeCCCCEEEEE
Confidence 222234567665443 34678889999888776554433222211100 01 1123444432 345678899
Q ss_pred EcCCCEEE--EcCCCCCCCC
Q 013152 246 SSSGRLYS--YGWSKYGQLG 263 (448)
Q Consensus 246 ~~~G~vy~--~G~n~~gqlg 263 (448)
+++|++.. +-.++.-.+|
T Consensus 232 t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 232 TKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp ETTSCEEEEEEEGGGSCBCC
T ss_pred cCCCeEEEeeeCHHHCCCcC
Confidence 99999988 7554444433
No 37
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.51 E-value=12 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=12.2
Q ss_pred CceEEEEEcCCCEEEEcC
Q 013152 239 WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~ 256 (448)
..|+++.. ++++|.+|-
T Consensus 141 ~~~~~~~~-~~~iyv~GG 157 (306)
T 3ii7_A 141 CSHGMVEA-NGLIYVCGG 157 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ceeEEEEE-CCEEEEECC
Confidence 45666554 789999995
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.15 E-value=17 Score=32.99 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=115.6
Q ss_pred CCCEEEEeeCCCc-eEEEEc-----CCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCC-----eeEEE
Q 013152 18 FRPVLLISAGASH-SVALLS-----GNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD-----HTTAY 86 (448)
Q Consensus 18 ~~~i~~i~~G~~~-~~~l~~-----~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~-----~~~~l 86 (448)
...|.+|+.-... .++... ||.|+.|-..... ..+.... -....|..++.... ..+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREI-EKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEE-EESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeee-cccCcEEEEEEcCCCCCCceEEEe
Confidence 4567777765533 333333 7888888543211 1111110 11235777777653 33444
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEE--------ecCceEEEEEcCCcEEEEECCCCCccCC
Q 013152 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIA--------CGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (448)
Q Consensus 87 ~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~--------~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (448)
..+ |.|..|-.....+ ....+. .....|..+. ....+.+.-..||.|..|-......
T Consensus 87 ~~d-g~i~iwd~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--- 151 (357)
T 3i2n_A 87 DFG-GNLHIWNLEAPEM----------PVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--- 151 (357)
T ss_dssp ETT-SCEEEECTTSCSS----------CSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---
T ss_pred cCC-CeEEEEeCCCCCc----------cEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---
Confidence 456 9999995443210 001111 1123566663 2334566667899999996543210
Q ss_pred CCCCCcccceeeeccc---CccEEEEE------eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCC
Q 013152 159 GTTEDSLVPQKLQAFE---GVSIKMVA------AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQR 229 (448)
Q Consensus 159 ~~~~~~~~p~~v~~~~---~~~i~~ia------~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~ 229 (448)
....+.... ...|..++ ......+.-..+|.|+.|-.... .+... ....
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~---~~~~ 209 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------------ALRWE---TNIK 209 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------------EEEEE---EECS
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------------ceeee---cCCC
Confidence 011111111 22455555 33445555567899999964321 01111 1112
Q ss_pred CeEEEEEec-----CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCe---eEEEeCCC
Q 013152 230 EKMVMVACG-----WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH---TMAVTSDG 301 (448)
Q Consensus 230 ~~i~~i~~G-----~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h---~~~lt~~G 301 (448)
..|..++.. ....++-..+|.|+.|-......+ ......... .....|..++..... .+.-..+|
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg 282 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAG 282 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCC
Confidence 356666554 345555667888888854321111 000000111 122346666655443 34446789
Q ss_pred cEEEeecCC
Q 013152 302 KLYGWGWNK 310 (448)
Q Consensus 302 ~vy~wG~n~ 310 (448)
.|+.|-...
T Consensus 283 ~i~iwd~~~ 291 (357)
T 3i2n_A 283 GLHLWKYEY 291 (357)
T ss_dssp EEEEEEEEC
T ss_pred cEEEeecCC
Confidence 999997653
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.89 E-value=17 Score=32.64 Aligned_cols=236 Identities=13% Similarity=0.072 Sum_probs=115.0
Q ss_pred ccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-ceEEEEEcCCcEEEEECCCCCcc
Q 013152 78 CGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQL 156 (448)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~-~h~~~lt~~G~vy~wG~n~~gql 156 (448)
.+.-..++++.+ |+++..+......+...... ...+.... .....|..++... ...++...+|.|..|-.......
T Consensus 9 ~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 9 SKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEECCEEEECSS-SCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC
T ss_pred CCceeEEEECCC-CCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce
Confidence 344566778888 88888776544332221111 11111111 1233566666543 23344445899999975442211
Q ss_pred CCCCCCCcccceeeec-ccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEE
Q 013152 157 GLGTTEDSLVPQKLQA-FEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMV 233 (448)
Q Consensus 157 G~~~~~~~~~p~~v~~-~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~ 233 (448)
.....+.. .....|..++...+ ..+.-..+|.|+.|-.... .+.....+......|.
T Consensus 86 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 86 --------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP------------TPRIKAELTSSAPACY 145 (337)
T ss_dssp --------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEE
T ss_pred --------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------------CcceeeecccCCCceE
Confidence 00011110 12235666665533 3444567899999964321 1112222222234565
Q ss_pred EEEec--CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecC
Q 013152 234 MVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 234 ~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 309 (448)
.++.. ..+.+.-..+|.|+.|-.... .....+.. ....|..++.. ....+.-..+|.|+.|-..
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQ-----------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-----------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC-----------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 55543 345555667889999864321 11111111 22346666553 3344555678999999654
Q ss_pred CCCcccCCCCCCccCceEeecCCCCcEEEEEcC--CCeeEEEECCCCEEEEeCC
Q 013152 310 KFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 310 ~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~n 361 (448)
....+ ..+. ....+..++.. ....++-..+|.++.|=..
T Consensus 214 ~~~~~-----------~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 214 EGRQL-----------QQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp TTEEE-----------EEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCceE-----------eeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 32111 1112 22345555443 3344445578889888653
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=86.86 E-value=21 Score=33.57 Aligned_cols=268 Identities=9% Similarity=-0.002 Sum_probs=128.5
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEE---EccCCeeEEEEcCCCEEEEEeCCC
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSV---TCGADHTTAYSESCMQVYSWGWGD 100 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v---~~G~~~~~~l~~~~g~v~~wG~n~ 100 (448)
++.-..+.+.-..||.++.|-....-.. ..+....+..+ .......+.-..+ |.|..|-...
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~ 128 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRADYTAVDTAKLQMRRFILGTTE-GDIKVLDSNF 128 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSCCEEEEEEECSSSCEEEEEETT-SCEEEECTTS
T ss_pred eeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecCCceEEEEEecCCCEEEEEECC-CCEEEEeCCC
Confidence 3444555666678899999964321110 01111122222 2233344444566 8999994321
Q ss_pred CCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccE
Q 013152 101 FGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSI 178 (448)
Q Consensus 101 ~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i 178 (448)
. .+..........|..++... .+.+.-..||.|+.|-...... ...+.. ....|
T Consensus 129 ~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~-h~~~v 184 (420)
T 3vl1_A 129 N------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLIG-HRATV 184 (420)
T ss_dssp C------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEEC-CSSCE
T ss_pred c------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEcC-CCCcE
Confidence 1 11112112234677777653 3556667889999997543211 111221 12346
Q ss_pred EEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEe-------------------
Q 013152 179 KMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC------------------- 237 (448)
Q Consensus 179 ~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~------------------- 237 (448)
..++.. ....+.-..||.|..|-......+ ..+.........+..++.
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTI-----------HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCcee-----------EEeecCCCCCCCccEEEEecCCcceeeecccCcccce
Confidence 665544 334455567889999964321000 000000001112222221
Q ss_pred ----cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCC---eeEEEeCCCcEEEeecCC
Q 013152 238 ----GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR---HTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 238 ----G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~ 310 (448)
...+.++-..+|.|+.|-..... .+..+.......|..++.... ..+.-..+|.|+.|-...
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 322 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS 322 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence 12234445678888888542211 112222112234666665433 455567789999997543
Q ss_pred CCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEE-ECCCCEEEEeCCC
Q 013152 311 FGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAV-TERQNVFSWGRGT 362 (448)
Q Consensus 311 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al-~~~g~v~~wG~n~ 362 (448)
..+ ....+.......|..+.......++. ..||.|..|--..
T Consensus 323 ~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 323 PEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 211 01222222334555555544444443 3688999996433
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.84 E-value=22 Score=33.78 Aligned_cols=161 Identities=9% Similarity=0.007 Sum_probs=77.4
Q ss_pred CCCEEEEeeCC-CceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCE
Q 013152 18 FRPVLLISAGA-SHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQ 92 (448)
Q Consensus 18 ~~~i~~i~~G~-~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~ 92 (448)
...|..|+... ....+ -..||.|.+|-.... .......+..... -...|..++... ...+....| |.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d-g~ 134 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEI------IVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKD-GQ 134 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHH------HTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECccc------ccCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCC-CE
Confidence 45677777655 33333 337888888853210 0000011111111 123477766643 344555566 99
Q ss_pred EEEEeCC--CCCCcCCCCCCCcccceeeccc------CCCCEEEEEe----cCceEEEEEcCCcEEEEECCCCCccCCCC
Q 013152 93 VYSWGWG--DFGRLGHGNSSDLFTPLPIKAL------HSLRVKQIAC----GDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (448)
Q Consensus 93 v~~wG~n--~~g~lG~g~~~~~~~p~~v~~l------~~~~i~~I~~----G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (448)
|..|-.. ..+++ ........+..+ ....+..+.. .....+.-+.||.|+.|-......
T Consensus 135 i~vwd~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----- 204 (437)
T 3gre_A 135 IIVLKVNHYQQESE-----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----- 204 (437)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-----
T ss_pred EEEEEeccccCCce-----eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-----
Confidence 9999532 11111 000011111111 2334555542 245566667889999996533111
Q ss_pred CCCcccceeeecc-cCccEEEEEeCC--CeEEEEecCCcEEEeeC
Q 013152 161 TEDSLVPQKLQAF-EGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (448)
Q Consensus 161 ~~~~~~p~~v~~~-~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~ 202 (448)
...+... ....|..++... ...+.-..||.|..|-.
T Consensus 205 ------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 205 ------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 1111111 123577776643 34444567899999964
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.73 E-value=42 Score=37.02 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=101.5
Q ss_pred eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-CceEEEEEcCCcEEEEECCCCCccCCCC
Q 013152 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (448)
Q Consensus 82 ~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (448)
+.+....+ |.|..|-...... ..+. .....|..++.. ....+....+|.|+.|-......
T Consensus 1017 ~l~s~~~d-g~i~vwd~~~~~~------------~~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~----- 1077 (1249)
T 3sfz_A 1017 TLISSSED-SVIQVWNWQTGDY------------VFLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI----- 1077 (1249)
T ss_dssp CEEEECSS-SBEEEEETTTTEE------------ECCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----
T ss_pred EEEEEcCC-CEEEEEECCCCce------------EEEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----
Confidence 33334456 8999996443211 1111 112356665543 34566777899999997543211
Q ss_pred CCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec
Q 013152 161 TEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG 238 (448)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G 238 (448)
...+.. ....|..++.. ....+.-..||.|+.|-......+ ..+......|..++..
T Consensus 1078 ------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~--------------~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A 1078 ------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------HELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp ------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS--------------BCCCCCSSCEEEEEEC
T ss_pred ------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee--------------eeeccCCCcEEEEEEC
Confidence 111111 11123333332 334455567788888854321111 1111112344444443
Q ss_pred C--ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeec---cccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCc
Q 013152 239 W--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLE---ALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 239 ~--~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~---~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~Gq 313 (448)
. ...+.-..+|.|+.|-......+.. ..|.... ......|..++...+..++++.+|.|..|-......
T Consensus 1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1137 LDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCCce
Confidence 2 2344445788888886543222211 0111100 011223555655544444455558888886543222
Q ss_pred ccCCCCCCccCceEeecCCCCcEE--EEEcCCCeeEEEECCCCEEEEe
Q 013152 314 VGVGDNVDHCSPVQVKFPLDQKVV--QISCGWRHTLAVTERQNVFSWG 359 (448)
Q Consensus 314 LG~g~~~~~~~p~~v~~~~~~~v~--~i~~G~~h~~al~~~g~v~~wG 359 (448)
+..- . .....|. .++......++...+|.++.|-
T Consensus 1211 ~~~~-----------~-~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1211 SQTF-----------Y-TNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp CCCC-----------C-CSSCCCCCCEECSSSCCEEEECTTCCEEEEC
T ss_pred eeee-----------e-ccCCcccEEEECCCCCEEEEecCCcEEEEEe
Confidence 2110 0 0112222 3333444556667889999984
No 43
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=86.65 E-value=20 Score=33.24 Aligned_cols=300 Identities=9% Similarity=-0.026 Sum_probs=141.6
Q ss_pred CCCCEEEEeeCC---CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeee--c--CCCCCcEEEEEcc---CCeeEEE
Q 013152 17 PFRPVLLISAGA---SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQL--S--ALDGHEIVSVTCG---ADHTTAY 86 (448)
Q Consensus 17 ~~~~i~~i~~G~---~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v--~--~~~~~~i~~v~~G---~~~~~~l 86 (448)
-...|..++... ...+.-..||.|.+|-.........- .......+ . ......|..++.. ....+..
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 456788888754 33444457999999965432211100 00000000 0 0122357777653 3345555
Q ss_pred EcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC-----ceEEEEEcCCcEEEEECCCCCccCCCCC
Q 013152 87 SESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD-----SHCLAVTVEGEVQSWGRNQNGQLGLGTT 161 (448)
Q Consensus 87 ~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~-----~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 161 (448)
..+ |.|..|-..... +..... ....+..+.... ...++-..+|.|+.|-......
T Consensus 119 ~~d-~~i~iwd~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 119 SFD-KTLKVWDTNTLQ------------TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp ETT-SEEEEEETTTTE------------EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred eCC-CeEEEeeCCCCc------------cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 667 999999643211 111111 122455554432 2566667889999997543211
Q ss_pred CCcccceeeecccCccEEEEEeCCCe---EEEEecCCcEEEeeCCCCCCCCC-CCC-CCccceeeeeeeccCCCeEEEEE
Q 013152 162 EDSLVPQKLQAFEGVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNLGL-GDR-NDRLIPEKVATVDLQREKMVMVA 236 (448)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~~~---~~~lt~~G~vy~wG~n~~gqlg~-~~~-~~~~~p~~v~~~~~~~~~i~~i~ 236 (448)
...+.. ....|..++..... .+.-..+|.|+.|-.......-. -.. ..................|..++
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 111111 12356666654432 44567889999997543221100 000 00000000000011123565555
Q ss_pred ecC--ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcc
Q 013152 237 CGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQV 314 (448)
Q Consensus 237 ~G~--~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqL 314 (448)
... .+.+....+|.|+.|-......+-.-.. ...........+..........++...++.|+.|-....-
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-- 325 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-- 325 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--
Confidence 533 3556667889999997644322111000 0000001111122222334455666778999999754321
Q ss_pred cCCCCCCccCceEeecCCCCcEEEEEcCC--CeeEEEECCCCEEEEeCCC
Q 013152 315 GVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWGRGT 362 (448)
Q Consensus 315 G~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~h~~al~~~g~v~~wG~n~ 362 (448)
+...-......|..++... ...+.-..||.|+.|=...
T Consensus 326 ----------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 326 ----------QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp ----------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred ----------ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence 1111111234566555443 3444556799999996544
No 44
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=86.44 E-value=17 Score=32.20 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=11.2
Q ss_pred eEEEEEcCCCEEEEcC
Q 013152 241 HTISVSSSGRLYSYGW 256 (448)
Q Consensus 241 hs~~l~~~G~vy~~G~ 256 (448)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 4567777788887654
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=86.36 E-value=20 Score=32.87 Aligned_cols=243 Identities=13% Similarity=0.046 Sum_probs=122.1
Q ss_pred CCCEEEEeeCCCceEE--EEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC--CCcEEEEEcc----CCeeEEEEcC
Q 013152 18 FRPVLLISAGASHSVA--LLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (448)
Q Consensus 18 ~~~i~~i~~G~~~~~~--l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~v~~G----~~~~~~l~~~ 89 (448)
...|..++.......+ -..||.|.+|=.... ....+..+. ...|..++.. ....+....|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence 4567777765443333 336888999854210 111111111 2357777754 4455556667
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC----ceEEEEEcCCcEEEEECCCCCccCCCCCCCcc
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (448)
|.|..|-.... ...+..........|..++... ...+....+|.|..|-...... .
T Consensus 79 -g~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 79 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------T 138 (379)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------C
T ss_pred -CEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------e
Confidence 99999953321 0011111111234677777654 3566778899999997543211 0
Q ss_pred cceeeecccCccEEEEEeC---------------CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCC
Q 013152 166 VPQKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G---------------~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (448)
.+..+. .....|..++.. ....+.-..+|.|+.|-.... ......+..+.....
T Consensus 139 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 139 SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 207 (379)
T ss_dssp CEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred eeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccC
Confidence 111111 112346666544 345556677899999953211 111112222232344
Q ss_pred eEEEEEecC-----ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcE
Q 013152 231 KMVMVACGW-----RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKL 303 (448)
Q Consensus 231 ~i~~i~~G~-----~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~v 303 (448)
.|..++... ...+....+|.|+.|-....... .........-....|..++.. ....++-..+|.|
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i 280 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSE
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcE
Confidence 566666553 34555567899999964331100 000000000012335555543 2344445678899
Q ss_pred EEeecCC
Q 013152 304 YGWGWNK 310 (448)
Q Consensus 304 y~wG~n~ 310 (448)
+.|-.+.
T Consensus 281 ~iw~~~~ 287 (379)
T 3jrp_A 281 TLWKENL 287 (379)
T ss_dssp EEEEEEE
T ss_pred EEEeCCC
Confidence 9987553
No 46
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=85.43 E-value=21 Score=32.40 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.8
Q ss_pred CceEEEEEcCCCEEEEcCC
Q 013152 239 WRHTISVSSSGRLYSYGWS 257 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~n 257 (448)
..|+++. -++++|++|-.
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4566665 57899999953
No 47
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=83.54 E-value=28 Score=32.26 Aligned_cols=187 Identities=11% Similarity=0.085 Sum_probs=92.7
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeeccc--CccEEEEEeCC---CeEEEEecCCcE
Q 013152 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGA---EHSVAVAEDGEL 197 (448)
Q Consensus 125 ~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~---~~~~~lt~~G~v 197 (448)
.|..|+... .+.+.-..||.|..|-.... +.+..+. ...|..++... ...+.-..||.|
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v 206 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI 206 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce
Confidence 577776544 34455568899999964331 1122221 23577776532 344555678999
Q ss_pred EEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec---CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeee
Q 013152 198 YGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (448)
Q Consensus 198 y~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 274 (448)
..|-......+. ..........+..++.. ....+.-..++.|+.|-.... + ...
T Consensus 207 ~~wd~~~~~~~~------------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~ 263 (357)
T 4g56_B 207 LLWDTRKPKPAT------------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQ 263 (357)
T ss_dssp EECCTTSSSCBC------------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCE
T ss_pred EEEECCCCceee------------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeE
Confidence 999532211100 00011112235555542 222233367888888853221 1 011
Q ss_pred eeccccCCcEEEEEcCC---CeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcC---CCeeEE
Q 013152 275 QLEALRESFISQISGGW---RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG---WRHTLA 348 (448)
Q Consensus 275 ~v~~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G---~~h~~a 348 (448)
.+. .....|..++... ...+.-.+||.|+.|-... +++ .. .+.....|..|+.. ....+.
T Consensus 264 ~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~-----------~~-~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 264 TSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV-----------FR-DLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE-----------EE-ECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE-----------eE-ECCCCCCEEEEEEeCCCCCEEEE
Confidence 111 1223477776532 2333356789999995332 111 11 11223467777754 222333
Q ss_pred EECCCCEEEEeCCC
Q 013152 349 VTERQNVFSWGRGT 362 (448)
Q Consensus 349 l~~~g~v~~wG~n~ 362 (448)
-..||.|+.|=-..
T Consensus 330 ~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEEECC-
T ss_pred EcCCCeEEEEECCC
Confidence 45789999996433
No 48
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=83.48 E-value=28 Score=32.18 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=13.5
Q ss_pred CceEEEEEcCCcEEEEECC
Q 013152 133 DSHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 133 ~~h~~~lt~~G~vy~wG~n 151 (448)
..|++++ .+++||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 3566666 78999999953
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.20 E-value=46 Score=34.49 Aligned_cols=231 Identities=14% Similarity=0.101 Sum_probs=112.8
Q ss_pred CCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEc--cCCeeEEEEcCCCEEE
Q 013152 19 RPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTC--GADHTTAYSESCMQVY 94 (448)
Q Consensus 19 ~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~--G~~~~~~l~~~~g~v~ 94 (448)
.+|..|+..... .++-..+|.|..|-.... + ....+... ...|..++. .....+....+ |.|+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~----------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-g~i~ 80 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-V----------EVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-FRIR 80 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-E----------EEEEEECC-SSCEEEEEEEGGGTEEEEEETT-SEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCC-c----------eEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-CeEE
Confidence 456666654333 334447889999954321 1 11112111 123554443 34445555666 9999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeec
Q 013152 95 SWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (448)
Q Consensus 95 ~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (448)
.|-...... ...+.. ....|..++... .+.+.-..||.|..|-...... ....+.
T Consensus 81 vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~- 137 (814)
T 3mkq_A 81 VFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------LEQTFE- 137 (814)
T ss_dssp EEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----------EEEEEE-
T ss_pred EEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----------EEEEEc-
Confidence 996543211 111111 123567666553 3455667789999996432110 111111
Q ss_pred ccCccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEe----cCceEEEE
Q 013152 173 FEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC----GWRHTISV 245 (448)
Q Consensus 173 ~~~~~i~~ia~G~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~----G~~hs~~l 245 (448)
.....|..++... ...+.-..+|.|+.|-..... ....+.... ...+..++. .....+.-
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCC--TTCCCEEEECCSTTCCEEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCC--CCCEEEEEEEECCCCCEEEEE
Confidence 1223566666543 345555678999999643210 011111111 122333332 33445555
Q ss_pred EcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCC--eeEEEeCCCcEEEeecCC
Q 013152 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR--HTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 246 ~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~--h~~~lt~~G~vy~wG~n~ 310 (448)
..+|.|+.|-.... .....+.. ....|..++.... ..+.-..+|.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 67888888854221 11111111 1223666654433 345556789999996554
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=82.93 E-value=39 Score=33.44 Aligned_cols=186 Identities=14% Similarity=0.143 Sum_probs=97.1
Q ss_pred cEEEEEccCC---eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCC---CEEEEEecCc---eEEEEEcC
Q 013152 72 EIVSVTCGAD---HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSL---RVKQIACGDS---HCLAVTVE 142 (448)
Q Consensus 72 ~i~~v~~G~~---~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~---~i~~I~~G~~---h~~~lt~~ 142 (448)
.|..++.... ..+....+ +.|+.|-..... ....+.. ... .|..++...+ ..+....+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d-~~v~vwd~~~~~-----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDD-GSVVFYQGPPFK-----------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETT-TEEEEEETTTBE-----------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred cEEEEEECCCCCcEEEEEeCC-CcEEEEeCCCcc-----------eeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 4555555443 34444556 899999522110 0111111 122 5777776543 55556789
Q ss_pred CcEEEEECCCCCccCCCCCCCcccceeeec---ccCccEEEEEe-CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccc
Q 013152 143 GEVQSWGRNQNGQLGLGTTEDSLVPQKLQA---FEGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLI 218 (448)
Q Consensus 143 G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~---~~~~~i~~ia~-G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~ 218 (448)
|.|+.|-......+ ..+.. .....|..++. .....+....+|.|..|-....
T Consensus 229 g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~------------- 284 (615)
T 1pgu_A 229 RKISCFDGKSGEFL-----------KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS------------- 284 (615)
T ss_dssp CCEEEEETTTCCEE-----------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-------------
T ss_pred CeEEEEECCCCCEe-----------EEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC-------------
Confidence 99999975331111 11100 11235666655 3445555667899999964321
Q ss_pred eeeeeeeccC----CCeEEEEEe-cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCe
Q 013152 219 PEKVATVDLQ----REKMVMVAC-GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH 293 (448)
Q Consensus 219 p~~v~~~~~~----~~~i~~i~~-G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h 293 (448)
..+..+... ...+..+.. ...+.++...+|.|+.|-... ..+..........|..++. ..
T Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 285 -KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp -EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred -cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 111111111 112322222 455666777889999986432 1111111122345888888 66
Q ss_pred eEEEeCCCcEEEeecC
Q 013152 294 TMAVTSDGKLYGWGWN 309 (448)
Q Consensus 294 ~~~lt~~G~vy~wG~n 309 (448)
.+.-..+|.|..|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 6667789999998654
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=82.47 E-value=31 Score=31.94 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=109.4
Q ss_pred cEEEEEccCCee-EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEEE
Q 013152 72 EIVSVTCGADHT-TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSW 148 (448)
Q Consensus 72 ~i~~v~~G~~~~-~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~w 148 (448)
.|.+++...+.. +.-..+ |.|..|=...... .........-....|..|+... .+.+.-..||.|..|
T Consensus 84 ~v~~~~~s~d~~l~~~s~d-g~v~lWd~~~~~~--------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDS-GAVELWELDENET--------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp CEEEEEEETTTEEEEEETT-SEEEEEEECTTSS--------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCeEEEEECC-CEEEEEeccCCCc--------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 467776554443 444455 9999995432211 1111111111123577776543 445555688999999
Q ss_pred ECCCCCccCCCCCCCcccceeeeccc--CccEEEEEeCCCe---EEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeee
Q 013152 149 GRNQNGQLGLGTTEDSLVPQKLQAFE--GVSIKMVAAGAEH---SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (448)
Q Consensus 149 G~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~ia~G~~~---~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 223 (448)
-.... +.+..+. ...|..++..... .+.-..||.|..|-.... +. ...+
T Consensus 155 d~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~~----------~~~~- 208 (344)
T 4gqb_B 155 DLAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP----------ASQI- 208 (344)
T ss_dssp ETTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-SC----------EEEC-
T ss_pred ECCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-ce----------eeee-
Confidence 64331 1122222 2357777664332 233457899999953211 10 0001
Q ss_pred eeccCCCeEEEEEec---CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC---CeeEEE
Q 013152 224 TVDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAV 297 (448)
Q Consensus 224 ~~~~~~~~i~~i~~G---~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~h~~~l 297 (448)
........+..++.. ....+.-..+|.|+.|=.... ++ ...+.. ....|..|+... ...+.-
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~----------~~~~~~-h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SC----------VLSSAV-HSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---C----------CEEEEC-CSSCEEEEEECSSSSCCEEEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cE----------EEEEcC-CCCCEEEEEEccCCCeEEEEE
Confidence 001112234444432 222333457888888843221 10 111111 123477776543 233345
Q ss_pred eCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCC-CeeEE--EECCCCEEEEeC
Q 013152 298 TSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-RHTLA--VTERQNVFSWGR 360 (448)
Q Consensus 298 t~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-~h~~a--l~~~g~v~~wG~ 360 (448)
.+||.|+.|-... +++ ... ......|..++... ...++ -..||.|..|=-
T Consensus 277 s~D~~i~vwd~~~-~~~-----------~~~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SEL-----------FRS-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ETTSCEEEECTTC-CEE-----------EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred eCCCeEEEEECCC-CcE-----------EEE-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 6899999995332 221 111 11234577776542 22333 347999999953
No 52
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.65 E-value=34 Score=31.81 Aligned_cols=222 Identities=13% Similarity=0.062 Sum_probs=116.3
Q ss_pred EEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC-----CeEEEEecCCcEEEeeCC
Q 013152 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA-----EHSVAVAEDGELYGWGWG 203 (448)
Q Consensus 129 I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~~~~~lt~~G~vy~wG~n 203 (448)
.+...++.+++|+.|++|..-...-...+.... -......+...++++|+.+.... ...+++|++|.+.-.-..
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR-GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC-CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC-CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 345667889999999999887544332221110 00111122223467788876653 467888999988866543
Q ss_pred CCCCCCCCCCCCccceeeeeeecc-CCCeEEE--EEecCceEEEEEcCCCEEEEcCC--CCCCCCCCCCCCceeeeeecc
Q 013152 204 RYGNLGLGDRNDRLIPEKVATVDL-QREKMVM--VACGWRHTISVSSSGRLYSYGWS--KYGQLGHGDFKDHLVPCQLEA 278 (448)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~-~~~~i~~--i~~G~~hs~~l~~~G~vy~~G~n--~~gqlg~~~~~~~~~p~~v~~ 278 (448)
.+-... + . -+..+.+ .+..++. +..+..+.++++++|++|.+-.. +--.+|...... ..+..
T Consensus 128 ~~~~~~------r-~--G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L 194 (327)
T 3uc1_A 128 DFDSNR------S-G--GIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRF 194 (327)
T ss_dssp GGCCCC------S-S--CEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCC
T ss_pred Hhhccc------c-C--ceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecC
Confidence 321110 0 0 1111111 1233433 34466788999999999998876 433333322111 11222
Q ss_pred ccCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-CCcEEEE--EcCCCeeEEEECCC
Q 013152 279 LRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQI--SCGWRHTLAVTERQ 353 (448)
Q Consensus 279 ~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i--~~G~~h~~al~~~g 353 (448)
-.+..|+.+..- ..+.+++|++|.+.-.=..++-..+.+.. --..+++.. +..++.+ ..+....++++++|
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~----G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK----GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC----CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC----cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 234557766543 34677788888766554333321111100 001111111 2234433 33567888999999
Q ss_pred CEEEEeCCCCCCCCC
Q 013152 354 NVFSWGRGTNGQLGH 368 (448)
Q Consensus 354 ~v~~wG~n~~gqLG~ 368 (448)
.+.-+--.+--.+|.
T Consensus 271 ~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 271 GVIRTAARQVRKAGR 285 (327)
T ss_dssp CEEEEEGGGSCBCCT
T ss_pred eEEEEehhhccccCC
Confidence 998885554444443
No 53
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=79.78 E-value=61 Score=33.66 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=121.8
Q ss_pred CCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC--CCcEEEEEcc----CCeeEEEEcC
Q 013152 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCG----ADHTTAYSES 89 (448)
Q Consensus 18 ~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~v~~G----~~~~~~l~~~ 89 (448)
...|..++.... ..+.-..||.|.+|-.... ....+..+. ...|..++.. ....+....|
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 345666665433 3344447999999953210 111111111 2357777764 3455555667
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC----ceEEEEEcCCcEEEEECCCCCccCCCCCCCcc
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~----~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (448)
|.|+.|-.... ...+..........|..++... ...+..+.||.|..|-.......
T Consensus 77 -g~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~--------- 136 (753)
T 3jro_A 77 -GKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------- 136 (753)
T ss_dssp -SCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------
T ss_pred -CeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------
Confidence 99999963321 0011111111234677777653 46677788999999975432110
Q ss_pred cceeeecccCccEEEEEeC---------------CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCC
Q 013152 166 VPQKLQAFEGVSIKMVAAG---------------AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G---------------~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (448)
....+.. ....|..++.. ....+.-..||.|+.|-.... ......+..+.....
T Consensus 137 ~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~----------~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 137 SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 205 (753)
T ss_dssp CCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred ceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC----------cccceeeeeecCCCC
Confidence 1111111 12245555543 344555667899999953221 111122222333344
Q ss_pred eEEEEEecCc-----eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEE--cCCCeeEEEeCCCcE
Q 013152 231 KMVMVACGWR-----HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQIS--GGWRHTMAVTSDGKL 303 (448)
Q Consensus 231 ~i~~i~~G~~-----hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~--~G~~h~~~lt~~G~v 303 (448)
.|..++.... ..+.-..+|.|+.|-.......-. ........ ....|..++ ....+.+.-..||.|
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~------~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK------KTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB------CCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce------eEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 6777766533 455556789999996543210000 00000000 111233333 333444555689999
Q ss_pred EEeecCCC
Q 013152 304 YGWGWNKF 311 (448)
Q Consensus 304 y~wG~n~~ 311 (448)
+.|-.+..
T Consensus 279 ~vwd~~~~ 286 (753)
T 3jro_A 279 TLWKENLE 286 (753)
T ss_dssp ECCBCCSS
T ss_pred EEEecCCC
Confidence 99976643
No 54
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=79.76 E-value=36 Score=31.01 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=14.7
Q ss_pred ccCCeeEEEEcCCCEEEEEeCCC
Q 013152 78 CGADHTTAYSESCMQVYSWGWGD 100 (448)
Q Consensus 78 ~G~~~~~~l~~~~g~v~~wG~n~ 100 (448)
.+.-..+++..+ |++|+...+.
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~ 44 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGD 44 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTT
T ss_pred cCCceEEEECCC-CCEEEEeCCC
Confidence 344456677777 8888877654
No 55
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=78.94 E-value=34 Score=30.16 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.3
Q ss_pred eeEEEeCCCcEEEeecC
Q 013152 293 HTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 293 h~~~lt~~G~vy~wG~n 309 (448)
..++++.+|++|+-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 35667777777776543
No 56
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=78.91 E-value=30 Score=31.28 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.0
Q ss_pred CCeEEEEecCCcEEEee
Q 013152 185 AEHSVAVAEDGELYGWG 201 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG 201 (448)
..|++++. +++||++|
T Consensus 113 ~~~~~~~~-~~~iyv~G 128 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVG 128 (308)
T ss_dssp BTCEEEEE-TTEEEEEC
T ss_pred cccEEEEE-CCEEEEEc
Confidence 35666655 88999998
No 57
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=78.79 E-value=41 Score=31.07 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=63.1
Q ss_pred CcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC---------ceEEEEEc
Q 013152 71 HEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD---------SHCLAVTV 141 (448)
Q Consensus 71 ~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~---------~h~~~lt~ 141 (448)
..|..++......+.-..| |.|+.|-...... .........+. .....|..++... ...+....
T Consensus 17 ~~i~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGD-GYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETT-SEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCC-CEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 3577787777666666677 9999997543211 00011111122 1233566665543 34555577
Q ss_pred CCcEEEEECCCCCccCCCCCCCcccceeeeccc----CccEEEEEeC------CCe-EEEEecCCcEEEeeCC
Q 013152 142 EGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFE----GVSIKMVAAG------AEH-SVAVAEDGELYGWGWG 203 (448)
Q Consensus 142 ~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~ia~G------~~~-~~~lt~~G~vy~wG~n 203 (448)
+|.|+.|-...... ........+.... ...|..++.. ..+ .+.-..+|.|+.|-..
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 89999996433111 0000012222221 2456666554 344 4555688999999644
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=78.00 E-value=47 Score=31.32 Aligned_cols=117 Identities=11% Similarity=0.037 Sum_probs=57.7
Q ss_pred CCCEEEEeeCC--CceEEEEcCCeEEEEeCC--CCCccCCCCCCCccCCeeecCC------CCCcEEEEEc----cCCee
Q 013152 18 FRPVLLISAGA--SHSVALLSGNIVCSWGRG--EDGQLGHGDAEDRLSPTQLSAL------DGHEIVSVTC----GADHT 83 (448)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l~~~g~v~~wG~n--~~gqLG~~~~~~~~~P~~v~~~------~~~~i~~v~~----G~~~~ 83 (448)
...|..|+.-. ...+.-..||.|..|--. ..+++- .......+..+ ....+..+.. .....
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-----KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-----EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-----eccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 45677777654 334445588999999532 112110 00000011100 1223444442 13344
Q ss_pred EEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc-CCCCEEEEEecC--ceEEEEEcCCcEEEEECC
Q 013152 84 TAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL-HSLRVKQIACGD--SHCLAVTVEGEVQSWGRN 151 (448)
Q Consensus 84 ~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l-~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n 151 (448)
+....+ |.|+.|-...... ...+... ....|..++... ...+.-+.||.|..|-..
T Consensus 186 ~~~~~d-~~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 186 VALTNL-SRVIIFDIRTLER-----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp EEEETT-SEEEEEETTTCCE-----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEeCC-CeEEEEeCCCCee-----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 555566 9999996432110 1111110 123677777643 445556788999999654
No 59
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=76.46 E-value=44 Score=30.19 Aligned_cols=192 Identities=10% Similarity=0.044 Sum_probs=100.2
Q ss_pred CCCEEEEEecCc-----eEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC--CeEEEEecCC
Q 013152 123 SLRVKQIACGDS-----HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDG 195 (448)
Q Consensus 123 ~~~i~~I~~G~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~~~~lt~~G 195 (448)
...|..|+...+ ..+.-..||.|..|-....++ .....+.. ....|..++... ...+.-..||
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 447888887764 445556789999997543211 11111221 233577776543 3455566789
Q ss_pred cEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEe--cCc--eEEEEEcCCCEEEEcCCCCCCCCCCCCCCce
Q 013152 196 ELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHL 271 (448)
Q Consensus 196 ~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~--hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~ 271 (448)
.|..|-.... ....+ ......|..++. ..+ +.+.-..+|.|+.|=......+
T Consensus 109 ~v~iwd~~~~------------~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------- 164 (368)
T 3mmy_A 109 TAKMWDLSSN------------QAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM--------- 164 (368)
T ss_dssp EEEEEETTTT------------EEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS---------
T ss_pred cEEEEEcCCC------------Cceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE---------
Confidence 9999964321 11111 112346666664 322 3444567899999964321111
Q ss_pred eeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC--CCcEEEEEcCCCe----
Q 013152 272 VPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--DQKVVQISCGWRH---- 345 (448)
Q Consensus 272 ~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~--~~~v~~i~~G~~h---- 345 (448)
..+... ..+..+..-....++.+.++.++.|-....... ...+..+. ...+..+......
T Consensus 165 --~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
T 3mmy_A 165 --MVLQLP--ERCYCADVIYPMAVVATAERGLIVYQLENQPSE----------FRRIESPLKHQHRCVAIFKDKQNKPTG 230 (368)
T ss_dssp --EEEECS--SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEE----------EEECCCSCSSCEEEEEEEECTTSCEEE
T ss_pred --EEEecC--CCceEEEecCCeeEEEeCCCcEEEEEeccccch----------hhhccccccCCCceEEEcccCCCCCCe
Confidence 111111 124555555567777888899999876532111 11111111 1223333333322
Q ss_pred eEEEECCCCEEEEeCCC
Q 013152 346 TLAVTERQNVFSWGRGT 362 (448)
Q Consensus 346 ~~al~~~g~v~~wG~n~ 362 (448)
.++-..+|.+..|=...
T Consensus 231 ~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 231 FALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEETTSEEEEEESSC
T ss_pred EEEecCCCcEEEEecCC
Confidence 55566889888886543
No 60
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.84 E-value=50 Score=30.58 Aligned_cols=221 Identities=11% Similarity=0.014 Sum_probs=116.8
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEccC-----CeeEEEEcCCCEEEEE
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCGA-----DHTTAYSESCMQVYSW 96 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~v~~G~-----~~~~~l~~~~g~v~~w 96 (448)
.+....+.+++++.|++|..--..--.. .....-.| ..++..++.+|+.+.... .+.+++|++ |.+.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~---~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-G~iKr~ 124 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEA---SRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-GLVKKS 124 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBC---CSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-SEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCC---CccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-CEEEEe
Confidence 3456677888999999997653221111 11111122 123333457788876654 467778887 988877
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCceEEEEEcCCcEEEEECC--CCCccCCCCCCCcccceeeec
Q 013152 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRN--QNGQLGLGTTEDSLVPQKLQA 172 (448)
Q Consensus 97 G~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~v~~ 172 (448)
-..++-.... .-...+..-.+..++.+ +.+.++.+++|++|++|.+-.. .--..|....-. ..+..
T Consensus 125 ~l~~~~~~~r------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L 194 (327)
T 3uc1_A 125 KLTDFDSNRS------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMRF 194 (327)
T ss_dssp EGGGGCCCCS------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCC
T ss_pred EHHHhhcccc------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeecC
Confidence 6444321110 00111111123445543 4466889999999999999877 443333322211 11222
Q ss_pred ccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE--EecCceEEEEEcC
Q 013152 173 FEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSS 248 (448)
Q Consensus 173 ~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~ 248 (448)
-++.+|+.+..- ..+.+++|++|.+.-.-..++-..+.+... .....+...+..++.+ ..+....++++++
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 345677776654 346788889997765543333222111110 0000111112234333 2356788999999
Q ss_pred CCEEEEcCCCCCCCC
Q 013152 249 GRLYSYGWSKYGQLG 263 (448)
Q Consensus 249 G~vy~~G~n~~gqlg 263 (448)
|++..+-..+--.+|
T Consensus 270 G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 270 GGVIRTAARQVRKAG 284 (327)
T ss_dssp GCEEEEEGGGSCBCC
T ss_pred CeEEEEehhhccccC
Confidence 998887554443333
No 61
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.68 E-value=20 Score=32.23 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=11.6
Q ss_pred CeEEEEecCCcEEEeeC
Q 013152 186 EHSVAVAEDGELYGWGW 202 (448)
Q Consensus 186 ~~~~~lt~~G~vy~wG~ 202 (448)
.|++++. +++||++|-
T Consensus 197 ~~~~~~~-~~~iyv~GG 212 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGG 212 (302)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cccEEEE-CCEEEEECC
Confidence 4555554 789999983
No 62
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=74.97 E-value=31 Score=27.73 Aligned_cols=109 Identities=11% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCEEEEEecC-ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC-CCeEEEEecCCcEEEe
Q 013152 123 SLRVKQIACGD-SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-AEHSVAVAEDGELYGW 200 (448)
Q Consensus 123 ~~~i~~I~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-~~~~~~lt~~G~vy~w 200 (448)
..+.+++-|-. .+.+-+..||.|-.-..... ...--.+... ...++.|.|- ..+.+++..+|+||.-
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~----------~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~Gs 97 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRSD----------THIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDGT 97 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTTC----------GGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCCC----------CceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEeec
Confidence 45788998876 56677888999985533210 1111112211 1247778775 5788899999999964
Q ss_pred eCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEE
Q 013152 201 GWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSY 254 (448)
Q Consensus 201 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~ 254 (448)
-. ..+.....++........-+..+..| ..++++.+|++|.-
T Consensus 98 ~~----------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlygs 139 (142)
T 3p6j_A 98 RD----------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDGT 139 (142)
T ss_dssp CC----------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEEE
T ss_pred cc----------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCccC
Confidence 21 11122233332222212223333334 47899999999963
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=74.63 E-value=50 Score=29.98 Aligned_cols=239 Identities=11% Similarity=0.078 Sum_probs=118.9
Q ss_pred cEEEEEccCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec----CceEEEEEcCC
Q 013152 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (448)
Q Consensus 72 ~i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~I~~G----~~h~~~lt~~G 143 (448)
.|..++...+ +.+.-..+ |.|+.|=.... ....+..+ ....|..++.. ....+....||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECC-CcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 4666665433 33333456 88999853210 11122222 23467777764 45666777899
Q ss_pred cEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccce
Q 013152 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (448)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 219 (448)
.|..|-..... ..+..........|..++... ...+....+|.|..|-...... ..+
T Consensus 80 ~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~~~ 140 (379)
T 3jrp_A 80 KVLIWKEENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 140 (379)
T ss_dssp CEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------CCE
T ss_pred EEEEEEcCCCc----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------eee
Confidence 99999643310 001111111233577776654 3556667899999996433211 011
Q ss_pred eeeeeeccCCCeEEEEEec---------------CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcE
Q 013152 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (448)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G---------------~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (448)
.. +......|..++.. ..+.++-..+|.|+.|-..... ....+..........|
T Consensus 141 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 141 II---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 209 (379)
T ss_dssp EE---EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred EE---ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcE
Confidence 11 11123345555543 3455566778999998532111 0011111111112346
Q ss_pred EEEEcCCC-----eeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEee-cCCCCcEEEEEcCCC--eeEEEECCCCEE
Q 013152 285 SQISGGWR-----HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVK-FPLDQKVVQISCGWR--HTLAVTERQNVF 356 (448)
Q Consensus 285 ~~I~~G~~-----h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~-~~~~~~v~~i~~G~~--h~~al~~~g~v~ 356 (448)
..++.... ..+....+|.|..|-....... ....... ......|..++.... ..++-..+|.|+
T Consensus 210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 66765533 4445567899999975542100 0001111 112345666555433 344456889999
Q ss_pred EEeCC
Q 013152 357 SWGRG 361 (448)
Q Consensus 357 ~wG~n 361 (448)
.|=.+
T Consensus 282 iw~~~ 286 (379)
T 3jrp_A 282 LWKEN 286 (379)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99654
No 64
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=73.86 E-value=60 Score=30.56 Aligned_cols=139 Identities=18% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC--CCcEEEEEccCC--eeEEEEcCCCEEEEEeCCCCCC
Q 013152 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD--GHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGR 103 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~--~~~i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~ 103 (448)
....+++--|+.||.|=... |+ ...+-.+. ...|..|+...+ +.+.-..| |.|..|-......
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-g~v~iWd~~~~~~ 181 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKR 181 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEE
T ss_pred CCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECC-CeEEEEEcCCCcE
Confidence 34577888899999995432 11 11111111 234777776533 44444566 9999996433211
Q ss_pred cCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEe
Q 013152 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA 183 (448)
Q Consensus 104 lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~ 183 (448)
..........+..++......+.-..++.++.|-....... ...+.. ....+..+..
T Consensus 182 ------------~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~----------~~~~~~-h~~~~~~~~~ 238 (420)
T 4gga_A 182 ------------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSG-HSQEVCGLRW 238 (420)
T ss_dssp ------------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEEC-CSSCEEEEEE
T ss_pred ------------EEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee----------eEEecc-cccceeeeee
Confidence 11111123357777776666666678888888864331110 011111 1112333333
Q ss_pred --CCCeEEEEecCCcEEEeeC
Q 013152 184 --GAEHSVAVAEDGELYGWGW 202 (448)
Q Consensus 184 --G~~~~~~lt~~G~vy~wG~ 202 (448)
.....+....||.++.|-.
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCeeeeeeccccceEEee
Confidence 3445556677899998864
No 65
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=73.80 E-value=50 Score=29.58 Aligned_cols=16 Identities=13% Similarity=0.484 Sum_probs=12.0
Q ss_pred CCeEEEEecCCcEEEee
Q 013152 185 AEHSVAVAEDGELYGWG 201 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG 201 (448)
..|++++. +++||++|
T Consensus 192 ~~~~~~~~-~~~i~v~G 207 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVG 207 (306)
T ss_dssp BSCEEEEE-TTEEEEEC
T ss_pred hcceEEEE-CCEEEEEe
Confidence 35666665 78999998
No 66
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=73.68 E-value=42 Score=29.99 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE----ecCceEEEEEcCCCEEEEcC
Q 013152 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. ++++|++|-... . .....+..++........+. .-..|++++. ++++|.+|-
T Consensus 100 ~~~~~~~~-~~~iyv~GG~~~-------~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 163 (302)
T 2xn4_A 100 STLGAAVL-NGLLYAVGGFDG-------S---TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGG 163 (302)
T ss_dssp BSCEEEEE-TTEEEEEEEECS-------S---CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred cceEEEEE-CCEEEEEcCCCC-------C---ccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeC
Confidence 35666665 789999983211 0 01122323333333333332 2234665554 789999984
No 67
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=73.61 E-value=59 Score=30.30 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=79.0
Q ss_pred EEccCCeeEEEE---cCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CceEEEEEcCCcEEEEE
Q 013152 76 VTCGADHTTAYS---ESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWG 149 (448)
Q Consensus 76 v~~G~~~~~~l~---~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G---~~h~~~lt~~G~vy~wG 149 (448)
+++...+..++. .+ |.|++|-....+++.. +.....-....|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGG-GAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSS-CCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCC-CEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 455555555542 35 8999997655443210 111001112367777764 34555567899999997
Q ss_pred CCCCCccCCCCCCCcccceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeee-
Q 013152 150 RNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV- 225 (448)
Q Consensus 150 ~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~- 225 (448)
........ ....+..........|..++.... ..+.-..||.|+.|-... ...+..+
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--------------~~~~~~~~ 171 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--------------GAAVLTLG 171 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--------------TEEEEEEC
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--------------CCccEEEe
Confidence 65432111 000111111112345777776544 344456789999996432 1112222
Q ss_pred -ccCCCeEEEEEec--CceEEEEEcCCCEEEEcC
Q 013152 226 -DLQREKMVMVACG--WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 226 -~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~ 256 (448)
......|..++.. ....+.-..+|.|+.|-.
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 2223456666553 334455567888888864
No 68
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=73.04 E-value=51 Score=29.37 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE----ecCceEEEEEcCCCEEEEcC
Q 013152 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. +++||++|-.. +.. ....+..++........+. .-..|+++.. ++++|.+|-
T Consensus 104 ~~~~~~~~-~~~lyv~GG~~----~~~------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGFD----GSR------RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp BSCEEEEE-TTEEEEECCBC----SSC------BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcccC----CCc------ccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 45666655 78999998322 110 0112222222233333322 1234666554 789999984
No 69
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=72.84 E-value=52 Score=29.32 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=76.3
Q ss_pred ccCccEEEEEeC-CCeEEEEecCCc-EEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCC
Q 013152 173 FEGVSIKMVAAG-AEHSVAVAEDGE-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGR 250 (448)
Q Consensus 173 ~~~~~i~~ia~G-~~~~~~lt~~G~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~ 250 (448)
+.+-++.-..++ ....++++.+|+ ++.++.... + ......|..+.... ..++.-.........+++.+|+
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTTSC
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECC--CCCEEEEecCCCEEEEECCCCC
Confidence 334455555566 555666777887 455553210 0 00111122222111 2234433344455667776676
Q ss_pred -EEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCC-Cc-EEEeecCCCCcccCCCCCCccCceE
Q 013152 251 -LYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSD-GK-LYGWGWNKFGQVGVGDNVDHCSPVQ 327 (448)
Q Consensus 251 -vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~-G~-vy~wG~n~~GqLG~g~~~~~~~p~~ 327 (448)
+|.++... .|.-+..+.+..+.-........++++.+ |+ +|-++.+... ......|.-
T Consensus 157 ~~w~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~ 217 (276)
T 3no2_A 157 LLNSVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQ 217 (276)
T ss_dssp EEEEEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEE
T ss_pred EEEEEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------Ccccccccc
Confidence 56665421 12222223333344233333346677766 65 4555533211 001123444
Q ss_pred eecCCCCcEEEEEc--C---------CCeeEEEECCCCEEEEeCCCCCCCC
Q 013152 328 VKFPLDQKVVQISC--G---------WRHTLAVTERQNVFSWGRGTNGQLG 367 (448)
Q Consensus 328 v~~~~~~~v~~i~~--G---------~~h~~al~~~g~v~~wG~n~~gqLG 367 (448)
+....+..+. |+. | ..+.+.++.+|++ .|=.+...+.|
T Consensus 218 ~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~ 266 (276)
T 3no2_A 218 LFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFG 266 (276)
T ss_dssp EEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSC
T ss_pred ceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCccccc
Confidence 4433344443 333 2 3357788888886 56555555554
No 70
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=71.89 E-value=57 Score=29.40 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=12.1
Q ss_pred ceEEEEEcCCCEEEEcC
Q 013152 240 RHTISVSSSGRLYSYGW 256 (448)
Q Consensus 240 ~hs~~l~~~G~vy~~G~ 256 (448)
.|++++. ++++|.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666655 789999995
No 71
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=70.74 E-value=73 Score=30.16 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=95.6
Q ss_pred eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CceEEEEEcCCcEEEEECCCCCccCC
Q 013152 82 HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQSWGRNQNGQLGL 158 (448)
Q Consensus 82 ~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (448)
+.+.-..+ |.|..|-.+...... ....+..........|..|+.. ....+....+|.|+.|-......
T Consensus 196 ~l~s~~~d-g~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--- 266 (430)
T 2xyi_A 196 YLLSASDD-HTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--- 266 (430)
T ss_dssp EEEEECTT-SCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---
T ss_pred eEEEEeCC-CeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---
Confidence 34444455 999999765422110 0111111111123357777764 34455666899999997654210
Q ss_pred CCCCCcccceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE
Q 013152 159 GTTEDSLVPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV 235 (448)
Q Consensus 159 ~~~~~~~~p~~v~~~~~~~i~~ia~G~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i 235 (448)
..+..........|..++.... ..+.-..+|.|..|-....++ .+..+......|..+
T Consensus 267 ------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 267 ------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQV 327 (430)
T ss_dssp ------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEECCSSCEEEE
T ss_pred ------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------CeEEeecCCCCEEEE
Confidence 0111111112235666666432 233446789999997543211 111222223456666
Q ss_pred EecC---ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccc--cCCcEEEEEcCCC---eeEEEeCCCcEEEee
Q 013152 236 ACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL--RESFISQISGGWR---HTMAVTSDGKLYGWG 307 (448)
Q Consensus 236 ~~G~---~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~--~~~~i~~I~~G~~---h~~~lt~~G~vy~wG 307 (448)
+... ...+.-..+|.|..|-....+..-.........|..+..+ ....|..++.... ..+....+|.|.+|-
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 6543 2344556788888886544322100000000001122111 1234666665433 344556788888887
Q ss_pred cC
Q 013152 308 WN 309 (448)
Q Consensus 308 ~n 309 (448)
..
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 54
No 72
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=70.32 E-value=67 Score=29.58 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=93.2
Q ss_pred cEEEEEccCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEecC---ceEEEEEcCCc
Q 013152 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACGD---SHCLAVTVEGE 144 (448)
Q Consensus 72 ~i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~I~~G~---~h~~~lt~~G~ 144 (448)
.|..++...+ +.+.-..+ +.|..|-.... ..+..+ ....|..|+... ...+....||.
T Consensus 141 ~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQK--------------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp CEEEEEECSSSSEEEEEETT-SCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred CEEEEEECCCCCEEEEEeCC-CeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 4666665433 33334456 89999953321 112222 133577776532 34556678899
Q ss_pred EEEEECCCCCccCCCCCCCcccceeee-cccCccEEEEEeCC--CeEE-EEecCCcEEEeeCCCCCCCCCCCCCCcccee
Q 013152 145 VQSWGRNQNGQLGLGTTEDSLVPQKLQ-AFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGWGRYGNLGLGDRNDRLIPE 220 (448)
Q Consensus 145 vy~wG~n~~gqlG~~~~~~~~~p~~v~-~~~~~~i~~ia~G~--~~~~-~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~ 220 (448)
|..|-......+ ..+. ......+..++... .+.+ .-..++.|+.|-... +.
T Consensus 206 v~~wd~~~~~~~-----------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~--------------~~ 260 (357)
T 4g56_B 206 ILLWDTRKPKPA-----------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN--------------PD 260 (357)
T ss_dssp EEECCTTSSSCB-----------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC--------------GG
T ss_pred eEEEECCCCcee-----------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCC--------------Cc
Confidence 999953221110 0000 11123466666542 2333 336789999995321 11
Q ss_pred eeeeeccCCCeEEEEEec---CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC---CCee
Q 013152 221 KVATVDLQREKMVMVACG---WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG---WRHT 294 (448)
Q Consensus 221 ~v~~~~~~~~~i~~i~~G---~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G---~~h~ 294 (448)
.+..+......|..++.. ....+.-.+||.|+.|=... +++ ...+. -...|..|+.. ....
T Consensus 261 ~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~----------~~~~~--H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEV----------FRDLS--HRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEE----------EEECC--CSSCEEEEEECSSSTTEE
T ss_pred EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcE----------eEECC--CCCCEEEEEEeCCCCCEE
Confidence 122222234466666653 23344456889999994321 111 11111 12347777754 2222
Q ss_pred EEEeCCCcEEEeecCCC
Q 013152 295 MAVTSDGKLYGWGWNKF 311 (448)
Q Consensus 295 ~~lt~~G~vy~wG~n~~ 311 (448)
+--..||.|+.|=....
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 33457899999975543
No 73
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=70.04 E-value=68 Score=29.56 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=111.2
Q ss_pred CCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCEEE
Q 013152 19 RPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQVY 94 (448)
Q Consensus 19 ~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~v~ 94 (448)
..|..++.... ..+.-..||.|+.|- ..++ ....+.. ....|..++.. ..+.+....+ |.|+
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVE-NVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETT-CCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecC-CeEE
Confidence 36777776543 344445788999995 1111 1111111 12346666654 3344555566 8999
Q ss_pred EEeCCCCCCcCCCCCCCcccceeec----ccCCCCEEEEEe-cCceEEEEEcCCcEEEEECCCCCccCCCCCCCccccee
Q 013152 95 SWGWGDFGRLGHGNSSDLFTPLPIK----ALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (448)
Q Consensus 95 ~wG~n~~g~lG~g~~~~~~~p~~v~----~l~~~~i~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (448)
.|-......+..-..... .+..+. ......+..+.. .....++...+|.|+.|-...... ...
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----------~~~ 242 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP-----------TGK 242 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC-----------SEE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce-----------eee
Confidence 996543211100000000 000000 000000222221 234566677889999997543211 011
Q ss_pred eecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCc-eEEEEE
Q 013152 170 LQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR-HTISVS 246 (448)
Q Consensus 170 v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~-hs~~l~ 246 (448)
+. .....|..++.. ....+.-..+|.|+.|-.... ..+..+......|..++.... ..++..
T Consensus 243 ~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 307 (425)
T 1r5m_A 243 LI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG--------------NSQNCFYGHSQSIVSASWVGDDKVISCS 307 (425)
T ss_dssp EC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB--------------SCSEEECCCSSCEEEEEEETTTEEEEEE
T ss_pred ec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC--------------ccceEecCCCccEEEEEECCCCEEEEEe
Confidence 11 112345555443 344555567899999953321 011111112335555554433 555566
Q ss_pred cCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecC
Q 013152 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 247 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 309 (448)
.+|.|+.|-..... +..........|..++.. ....++-..+|.|+.|-..
T Consensus 308 ~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 308 MDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 78889888643211 111111122346666544 3344555678899998754
No 74
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=68.90 E-value=92 Score=30.61 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=100.4
Q ss_pred CCCEEEEeeCCC---ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCC--CcEEEEEccCC---eeEEEEcC
Q 013152 18 FRPVLLISAGAS---HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDG--HEIVSVTCGAD---HTTAYSES 89 (448)
Q Consensus 18 ~~~i~~i~~G~~---~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~--~~i~~v~~G~~---~~~~l~~~ 89 (448)
...|..++.... ..+.-..||.|..|-.... + ....+..... ..|..++...+ ..+....+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-K----------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-E----------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-c----------eeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 345666665444 3445557888999853211 0 0111111111 14777766544 44445566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecc---cCCCCEEEEEe-cCceEEEEEcCCcEEEEECCCCCccCCCCCCCcc
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA---LHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~---l~~~~i~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (448)
|.|+.|-...... ...+.. .....|..++. ...+.+....||.|..|-......+
T Consensus 229 -g~i~vwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 229 -RKISCFDGKSGEF-----------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp -CCEEEEETTTCCE-----------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred -CeEEEEECCCCCE-----------eEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 9999996432111 111101 12335666665 4455666677899999965431110
Q ss_pred cceeeecc---cCccEEEEEe-CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCce
Q 013152 166 VPQKLQAF---EGVSIKMVAA-GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRH 241 (448)
Q Consensus 166 ~p~~v~~~---~~~~i~~ia~-G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~h 241 (448)
..+... ....+..+.. .....++-..+|.|+.|-... ...+..+......|..++. ..
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~--------------~~~~~~~~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 288 --QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH--------------DEVLKTISGHNKGITALTV-NP- 349 (615)
T ss_dssp --EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------EEEEEEECCCSSCEEEEET-TT-
T ss_pred --EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------CcEEEEEeCCCCCEEEEEe-cC-
Confidence 011100 0112333322 556667778899999996321 2223333334557888888 66
Q ss_pred EEEEEcCCCEEEEcCC
Q 013152 242 TISVSSSGRLYSYGWS 257 (448)
Q Consensus 242 s~~l~~~G~vy~~G~n 257 (448)
.+.-..+|.|..|-..
T Consensus 350 l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSS 365 (615)
T ss_dssp TEEEETTSCEEETTTT
T ss_pred cEEECCCCeEEEEEch
Confidence 5666788999998643
No 75
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=67.64 E-value=1.2e+02 Score=31.42 Aligned_cols=241 Identities=11% Similarity=0.070 Sum_probs=117.3
Q ss_pred cEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec----CceEEEEEcCC
Q 013152 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG----DSHCLAVTVEG 143 (448)
Q Consensus 72 ~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~I~~G----~~h~~~lt~~G 143 (448)
.|..++... .+.+.-..+ |.|..|-.... ....+..+ ....|..++.. ....+....||
T Consensus 11 ~V~~l~~s~dg~~latg~~d-g~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSD-KTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp CEEEECCCSSSCCEEEEETT-TEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred eeEEEEECCCCCeEEEEECC-CcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence 355555442 233334456 99999953210 11122222 13368788764 45566777899
Q ss_pred cEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC----CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccce
Q 013152 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIP 219 (448)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 219 (448)
.|+.|-.... ...+..........|..++... ...+.-..+|.|+.|-....... ..
T Consensus 78 ~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---------~~ 138 (753)
T 3jro_A 78 KVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SP 138 (753)
T ss_dssp CEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---------CC
T ss_pred eEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---------ce
Confidence 9999964321 0001111111233577776653 45666678899999964332110 01
Q ss_pred eeeeeeccCCCeEEEEEec---------------CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcE
Q 013152 220 EKVATVDLQREKMVMVACG---------------WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFI 284 (448)
Q Consensus 220 ~~v~~~~~~~~~i~~i~~G---------------~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i 284 (448)
.. +......|..++.. ....+.-..+|.|+.|-..... ....+..........|
T Consensus 139 ~~---~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 139 II---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWV 207 (753)
T ss_dssp EE---EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCE
T ss_pred eE---eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcE
Confidence 11 11112345555443 3445566678999988542211 0111111111122347
Q ss_pred EEEEcCCC-----eeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEc--CCCeeEEEECCCCEEE
Q 013152 285 SQISGGWR-----HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISC--GWRHTLAVTERQNVFS 357 (448)
Q Consensus 285 ~~I~~G~~-----h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~h~~al~~~g~v~~ 357 (448)
..++.... ..+.-..+|.|+.|-....... ..............|..++. .....+.-..||.|+.
T Consensus 208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC-------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc-------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 77776543 3444567899999976542110 00000000001123333332 3334444458899999
Q ss_pred EeCCC
Q 013152 358 WGRGT 362 (448)
Q Consensus 358 wG~n~ 362 (448)
|-.+.
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 96553
No 76
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=67.44 E-value=86 Score=29.79 Aligned_cols=109 Identities=8% Similarity=0.111 Sum_probs=64.3
Q ss_pred cCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCceEEEE
Q 013152 60 LSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAV 139 (448)
Q Consensus 60 ~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~l 139 (448)
..|.....+.. |.+|++ ....+++..+ +.|..|=-....+ ...+..+ ...+.++.+-....+++
T Consensus 79 ~~~~~~~~lp~--V~~l~f-d~~~L~v~~~-~~l~v~dv~sl~~-----------~~~~~~~-~~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD--VIFVCF-HGDQVLVSTR-NALYSLDLEELSE-----------FRTVTSF-EKPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT--EEEEEE-ETTEEEEEES-SEEEEEESSSTTC-----------EEEEEEC-SSCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC--eeEEEE-CCCEEEEEcC-CcEEEEEchhhhc-----------cCcccee-ecceeeEEecCCCEEEE
Confidence 34533333443 889999 6667777777 9999996443321 1111111 22456666655568888
Q ss_pred EcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEe
Q 013152 140 TVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGW 200 (448)
Q Consensus 140 t~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~w 200 (448)
+.||.|+.|--... ++ ..+ ...|..++-...-.++...||++..|
T Consensus 143 ~~dG~L~v~dl~~~-~~-----------~~~----~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 143 NSVNDLSALDLRTK-ST-----------KQL----AQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp ETTSEEEEEETTTC-CE-----------EEE----EESEEEEEECSSEEEEEETTSCEEEE
T ss_pred ECCCCEEEEEccCC-cc-----------ccc----cCCceEEEEcCCceEEEEcCCcEEEE
Confidence 99999999965321 11 011 12567777666666666667776666
No 77
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=65.62 E-value=90 Score=29.30 Aligned_cols=145 Identities=13% Similarity=0.257 Sum_probs=74.1
Q ss_pred CCEEEEeeCCCceEEEE--cCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCEEE
Q 013152 19 RPVLLISAGASHSVALL--SGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVY 94 (448)
Q Consensus 19 ~~i~~i~~G~~~~~~l~--~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~v~ 94 (448)
..|..++.......+++ .||.|.+|-.... + ....+.... ..|..++... ...+.-..| +.|.
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~----------~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D-~~i~ 175 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETG-D----------FERTLKGHT-DSVQDISFDHSGKLLASCSAD-MTIK 175 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTC-C----------CCEEECCCS-SCEEEEEECTTSSEEEEEETT-SCCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c----------EEEEEeccC-CcEEEEEEcCCCCEEEEEeCC-CeEE
Confidence 46777776655444444 7899999964321 1 111222211 2466665533 333444456 8888
Q ss_pred EEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceee
Q 013152 95 SWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (448)
Q Consensus 95 ~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (448)
.|-..... .+..+ ....|..++.. ..+.+.-..||.|..|-......+ ..+
T Consensus 176 iwd~~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-----------~~~ 230 (410)
T 1vyh_C 176 LWDFQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----------KTF 230 (410)
T ss_dssp EEETTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----------EEE
T ss_pred EEeCCCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEE
Confidence 88543211 11111 12356666654 355666778999999975431110 111
Q ss_pred ecccCccEEEEEeCCC--eEEEEecCCcEEEeeC
Q 013152 171 QAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGW 202 (448)
Q Consensus 171 ~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~ 202 (448)
.. ....|..+....+ ..+.-..||.|..|-.
T Consensus 231 ~~-h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 231 TG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp EC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eC-CCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 11 1123555544333 3344457888888854
No 78
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=65.03 E-value=75 Score=28.20 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=29.9
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE----ecCceEEEEEcCCCEEEEcC
Q 013152 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. ++++|++|-... .. ....+..++........+. .-..|++++. ++++|.+|-
T Consensus 151 ~~~~~~~~-~~~iyv~GG~~~----~~------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG 214 (301)
T 2vpj_A 151 EGAGLVVA-SGVIYCLGGYDG----LN------ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGG 214 (301)
T ss_dssp BSCEEEEE-TTEEEEECCBCS----SC------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEECCCCC----Cc------ccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeC
Confidence 34565554 889999983211 00 1111222222223333331 1235666555 689999985
No 79
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=62.89 E-value=1.4e+02 Score=30.65 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=112.4
Q ss_pred cEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe--cCceEEEEEcCCcEEE
Q 013152 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC--GDSHCLAVTVEGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~--G~~h~~~lt~~G~vy~ 147 (448)
.|..++... ...++...+ |.|..|-..... ....+.. ....|..++. .....+..+.+|.|+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~-g~v~iwd~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQV-----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETT-SEEEEEETTTTE-----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCC-CEEEEEECCCCc-----------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 355555543 334444556 899999543211 1111111 1234665544 3455666678999999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeee
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~ 225 (448)
|-...... ...+.. ....|..++...+ +.+.-..+|.|..|-.... ......+
T Consensus 82 w~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-------------~~~~~~~ 136 (814)
T 3mkq_A 82 FNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-------------WALEQTF 136 (814)
T ss_dssp EETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-------------SEEEEEE
T ss_pred EECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-------------ceEEEEE
Confidence 97543211 111111 1234666665543 3445567889999964211 0111122
Q ss_pred ccCCCeEEEEEecC---ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEc----CCCeeEEEe
Q 013152 226 DLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG----GWRHTMAVT 298 (448)
Q Consensus 226 ~~~~~~i~~i~~G~---~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~----G~~h~~~lt 298 (448)
......|..++... ...+.-..+|.|+.|-...... ...+.......+..++. .....+.-.
T Consensus 137 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 22234566666543 3445556789999996432110 11111111122333333 334555566
Q ss_pred CCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCC--eeEEEECCCCEEEEeCC
Q 013152 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSWGRG 361 (448)
Q Consensus 299 ~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--h~~al~~~g~v~~wG~n 361 (448)
.+|.|+.|-..... ....+. .....|..++.... ..+....+|.|+.|-..
T Consensus 206 ~dg~i~~~d~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 206 DDLTIKIWDYQTKS-----------CVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp TTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEECCCCc-----------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 78999999643211 111111 12245666554433 34444578889999643
No 80
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=62.18 E-value=88 Score=28.01 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=31.3
Q ss_pred EEEEEcCCCeeEEEeCCCc-EEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCC-CeeEEEECCCC-EEEEeC
Q 013152 284 ISQISGGWRHTMAVTSDGK-LYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-RHTLAVTERQN-VFSWGR 360 (448)
Q Consensus 284 i~~I~~G~~h~~~lt~~G~-vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-~h~~al~~~g~-v~~wG~ 360 (448)
+..+..+....++++.+|+ +|+-.... +.+ ..+.......+..+..+. -+.++++.+|+ +|.-..
T Consensus 266 ~~~~~~~~~~~~~~s~dg~~l~v~~~~~-~~v-----------~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 266 LAKVAAPESLAVLFNPARNEAYVTHRQA-GKV-----------SVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEECSSCCCEEEETTTTEEEEEETTT-TEE-----------EEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEcCCCceEEECCCCCEEEEEECCC-CeE-----------EEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 3444455556677777776 66544322 111 112222222223333332 25677888887 555443
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=61.35 E-value=1e+02 Score=28.53 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=79.0
Q ss_pred EeeCCCceEEE---EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc---CCeeEEEEcCCCEEEEEe
Q 013152 24 ISAGASHSVAL---LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCMQVYSWG 97 (448)
Q Consensus 24 i~~G~~~~~~l---~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G---~~~~~~l~~~~g~v~~wG 97 (448)
+++......++ ..+|.|++|-....+++.. ..+ .+..- ...|..++.. ....+.-..| |.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~h-~~~V~~~~~~p~~~~~l~s~s~d-g~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCGH-TAPVLDIAWCPHNDNVIASGSED-CTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCCC-SSCEEEEEECTTCTTEEEEEETT-SEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEecC-CCCEEEEEeCCCCCCEEEEEeCC-CeEEEEE
Confidence 45555555554 3578999997655443310 001 11111 1347777664 3444444566 9999997
Q ss_pred CCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc---eEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeee-cc
Q 013152 98 WGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ-AF 173 (448)
Q Consensus 98 ~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~-~~ 173 (448)
....+... ....+..........|..|+.... ..+.-..||.|+.|-...... ...+. ..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~ 174 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-----------VLTLGPDV 174 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-----------EEEECTTT
T ss_pred ccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-----------cEEEecCC
Confidence 55432211 011111111112346777776543 455557899999996543110 11110 11
Q ss_pred cCccEEEEEeC--CCeEEEEecCCcEEEeeC
Q 013152 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGW 202 (448)
Q Consensus 174 ~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~ 202 (448)
....|..++.. ....+.-..||.|+.|-.
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 22356666654 334455567899999964
No 82
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=60.76 E-value=1e+02 Score=28.29 Aligned_cols=236 Identities=9% Similarity=0.069 Sum_probs=110.6
Q ss_pred cEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CceEEEEEcCCcEEE
Q 013152 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G--~~h~~~lt~~G~vy~ 147 (448)
.|..++... .+.+....+ |.|+.|- ..+. ....+. .....|..++.. ..+.+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~d-g~i~i~~--~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVEN-GELRLWN--KTGA----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEE--TTSC----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCC-CeEEEEe--CCCC----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 466666553 344444566 8999995 1111 111111 123357777664 345666678899999
Q ss_pred EECCCCCccCCCCCCCcccceeee----cccCccEEEEE-eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeee
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQ----AFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKV 222 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~ia-~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v 222 (448)
|-......+..-.... .....+. ......+..++ ......++...+|.|+.|-..... .+
T Consensus 176 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~--------------~~ 240 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT--------------PT 240 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS--------------CS
T ss_pred EECCCCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc--------------ee
Confidence 9764321110000000 0000000 00000021121 123445666778899999643310 01
Q ss_pred eeeccCCCeEEEEEec--CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCC-eeEEEeC
Q 013152 223 ATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWR-HTMAVTS 299 (448)
Q Consensus 223 ~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~-h~~~lt~ 299 (448)
..+......|..++.. ..+.+.-..+|.|+.|-...... ...+. .....|..++.... ..+....
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-----------QNCFY-GHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC-----------SEEEC-CCSSCEEEEEEETTTEEEEEET
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc-----------ceEec-CCCccEEEEEECCCCEEEEEeC
Confidence 1111112345444432 33455556788898886432110 11111 11223555554322 5556678
Q ss_pred CCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcC--CCeeEEEECCCCEEEEeC
Q 013152 300 DGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSWGR 360 (448)
Q Consensus 300 ~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~wG~ 360 (448)
+|.|+.|-.... .+..........|..++.. ....++-..+|.|+.|-.
T Consensus 309 d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 309 DGSVRLWSLKQN------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp TSEEEEEETTTT------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred CCcEEEEECCCC------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 899999975432 1111111223456666554 334445567899999964
No 83
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=59.47 E-value=1.1e+02 Score=28.34 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=54.2
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecc--cCccEEEEEeCCC--eEEEEecCCcEE
Q 013152 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--EGVSIKMVAAGAE--HSVAVAEDGELY 198 (448)
Q Consensus 125 ~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~ia~G~~--~~~~lt~~G~vy 198 (448)
.|..++... .+.+.-..||.|..|-............... ......+ ....|..++...+ +.+.-..||.|+
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS--GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC--CcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 577776643 3455556789999997543221110000000 0001111 1224666665543 344446789999
Q ss_pred EeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--------ceEEEEEcCCCEEEEc
Q 013152 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--------RHTISVSSSGRLYSYG 255 (448)
Q Consensus 199 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--------~hs~~l~~~G~vy~~G 255 (448)
.|-... ...+..+......|..++... ...+.-..||.|..|-
T Consensus 336 iwd~~~--------------~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 336 FWDKKS--------------GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEETTT--------------CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEECCC--------------CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 996322 111222232334566666542 2233345688888884
No 84
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=58.72 E-value=1.4e+02 Score=29.14 Aligned_cols=219 Identities=20% Similarity=0.246 Sum_probs=105.0
Q ss_pred cEEEEEcc--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEE
Q 013152 72 EIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G--~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~ 147 (448)
.+..++.. ..+.+.-.++ |.|..|-.+ +++ ...+.. ....|..++... ...+....|+.|+.
T Consensus 346 ~v~~~~~s~~g~~l~~~~~d-g~v~~~~~~--~~~----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDD-KTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SEEEEEETT--CCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCC-CEEEEEcCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 45555543 3344445566 889988532 110 111111 133577766543 34455567889999
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeee
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~ 225 (448)
|-.+ +++ ...+.. ....|..++...+ ..+.-..|+.|+.|-.+ + ..+..+
T Consensus 412 ~~~~--~~~----------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~-------------~~~~~~ 463 (577)
T 2ymu_A 412 WNRN--GQL----------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--G-------------QLLQTL 463 (577)
T ss_dssp ECTT--CCE----------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETT--S-------------CEEEEE
T ss_pred EeCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--C-------------CEEEEE
Confidence 8432 111 111111 1235666655433 33344578889888521 1 112222
Q ss_pred ccCCCeEEEEEecCc--eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC--CeeEEEeCCC
Q 013152 226 DLQREKMVMVACGWR--HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW--RHTMAVTSDG 301 (448)
Q Consensus 226 ~~~~~~i~~i~~G~~--hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~h~~~lt~~G 301 (448)
......|..++...+ ..+.-..++.|+.|-. .+++ ...+.. ....|..++... .+.+.-..||
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~--~~~~----------~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg 530 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDK 530 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET--TSCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC--CCCE----------EEEEeC-CCCCEEEEEEcCCCCEEEEEECcC
Confidence 222345666655433 2333357788888853 2211 111111 123366666543 3344456788
Q ss_pred cEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcC--CCeeEEEECCCCEEEE
Q 013152 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCG--WRHTLAVTERQNVFSW 358 (448)
Q Consensus 302 ~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~h~~al~~~g~v~~w 358 (448)
.|+.|-. .|+ +...-......|..++.. ..+.+.-..|+.|+.|
T Consensus 531 ~v~lwd~--~~~-----------~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 531 TVKLWNR--NGQ-----------LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEECT--TSC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEEeC--CCC-----------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 9999942 121 111111123456655543 2333334467778777
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=58.70 E-value=1.2e+02 Score=28.51 Aligned_cols=209 Identities=13% Similarity=0.094 Sum_probs=99.9
Q ss_pred CEEEEEecC---ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC---CCeEEEEecCCcEE
Q 013152 125 RVKQIACGD---SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---AEHSVAVAEDGELY 198 (448)
Q Consensus 125 ~i~~I~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~~~~~lt~~G~vy 198 (448)
.|..++... .+.+.-..+|.|..|-.+...... ....+..........|..++.. ....+....+|.|+
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 455555432 255666678999999765522110 0011111111122357777664 34444556799999
Q ss_pred EeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC---ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeee
Q 013152 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW---RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQ 275 (448)
Q Consensus 199 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~---~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~ 275 (448)
.|-...... ..+ +..+......|..++... +..+.-..+|.|..|-.....+ |..
T Consensus 258 i~d~~~~~~---------~~~--~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~ 315 (430)
T 2xyi_A 258 IWDTRNNNT---------SKP--SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLH 315 (430)
T ss_dssp EEETTCSCS---------SSC--SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSE
T ss_pred EEECCCCCC---------Ccc--eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeE
Confidence 997543210 011 111112233555555543 2233446788899887543221 111
Q ss_pred eccccCCcEEEEEcCCC---eeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeec--CCCCcEEEEEcCCC---eeE
Q 013152 276 LEALRESFISQISGGWR---HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKF--PLDQKVVQISCGWR---HTL 347 (448)
Q Consensus 276 v~~~~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~--~~~~~v~~i~~G~~---h~~ 347 (448)
........|..|+.... ..+.-..+|.|..|-....+..-.........|..+.. .....|..++.... ..+
T Consensus 316 ~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 11111234666665432 24445578999999765432210000000001122221 12345776665433 334
Q ss_pred EEECCCCEEEEeC
Q 013152 348 AVTERQNVFSWGR 360 (448)
Q Consensus 348 al~~~g~v~~wG~ 360 (448)
....+|.|..|-.
T Consensus 396 s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 396 SVSEDNIMQVWQM 408 (430)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEECCCCEEEeEc
Confidence 4557888888864
No 86
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=56.71 E-value=1.3e+02 Score=28.40 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=43.4
Q ss_pred EEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCcEEEeeC
Q 013152 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGW 202 (448)
Q Consensus 126 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~ 202 (448)
|.+|++ +...+++.++|.|..|--....+. .....++ ..+.++.+-....++++.+|.|+.|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~-~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFE-KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECS-SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceee-cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 777788889999999975443221 1111111 235566665556888899999999954
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=56.44 E-value=1.2e+02 Score=27.68 Aligned_cols=250 Identities=8% Similarity=0.017 Sum_probs=119.0
Q ss_pred CCCCEEEEeeC---CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC-----CeeEEEEc
Q 013152 17 PFRPVLLISAG---ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA-----DHTTAYSE 88 (448)
Q Consensus 17 ~~~~i~~i~~G---~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~-----~~~~~l~~ 88 (448)
....|..++.- ....+.-..||.|..|-..... +....... ..+..+.... ...++-..
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNFE-ETVYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEECS-SCEEEEEECSSCSSCCEEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccCC-CceeeeEeecCCCCCcEEEEEcC
Confidence 45678888763 3455556679999999643211 11111111 1244444332 14444556
Q ss_pred CCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecCc---eEEEEEcCCcEEEEECCCCCcc-CCC---CC
Q 013152 89 SCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQL-GLG---TT 161 (448)
Q Consensus 89 ~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gql-G~~---~~ 161 (448)
+ |.|+.|-...... ...+.. ....|..++.... ..+.-..+|.|+.|-....... -.- ..
T Consensus 165 ~-~~v~~~d~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 165 G-PKVQLCDLKSGSC-----------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp S-SSEEEEESSSSCC-----------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred C-CeEEEEeCCCcce-----------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 6 9999996432211 111111 2335777766543 2456678999999975442211 000 00
Q ss_pred CCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC
Q 013152 162 EDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (448)
Q Consensus 162 ~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 239 (448)
................|..++...+ +.+....+|.|+.|-......+-...... .........+.......
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV-------CNNSKKGLKFTVSCGCS 304 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC-------CCCCSSCCCCEECCSSS
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc-------cccccccceeEEecCCC
Confidence 0000000000112235777766543 55666789999999755422211100000 00000011222222233
Q ss_pred ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCC
Q 013152 240 RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKF 311 (448)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~ 311 (448)
...++...++.|+.|-...... ...+.. ....|..++.. ..+.+.-..||.|+.|-....
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQ-----------ITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCE-----------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred ceEEEEecCCEEEEEECcCCcc-----------eeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4455666788899986533211 111111 12235555543 344555567999999987654
No 88
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.54 E-value=1.2e+02 Score=27.59 Aligned_cols=260 Identities=9% Similarity=0.054 Sum_probs=128.9
Q ss_pred CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEE--EEecCceEEEEEcCCcEEEEECCCCCccC
Q 013152 80 ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLG 157 (448)
Q Consensus 80 ~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~--I~~G~~h~~~lt~~G~vy~wG~n~~gqlG 157 (448)
....+++|.+ |.+--.-...+.....+.. -...+..-.+..+.. ++.+.++.+++|+.|++|.+-...-...+
T Consensus 8 e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 8 ENIVVMLTKK-GFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp CEEEEEEETT-CBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCEEEEEeCC-CEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 3456778888 8887664444322211100 011111112334444 45567889999999999998754432222
Q ss_pred CCCCCCcccceeeecccCccEEEEEeC-----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeE
Q 013152 158 LGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKM 232 (448)
Q Consensus 158 ~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i 232 (448)
....- ......+..-++++|+.+... ..+.+++|++|.++-.-..++-... ........+.. +..+
T Consensus 83 r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-------~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 83 RASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-------SRGVIVIKLND-KDFV 153 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred ccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-------CCcEEEEecCC-CCEE
Confidence 11100 011122333345677777553 4568899999999987654431110 01111111221 3445
Q ss_pred EEEE--ecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEc--CCCeeEEEeCCCcEEEeec
Q 013152 233 VMVA--CGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG--GWRHTMAVTSDGKLYGWGW 308 (448)
Q Consensus 233 ~~i~--~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~--G~~h~~~lt~~G~vy~wG~ 308 (448)
+.+. .+..+.++++++|.+..+-.++.-..|...... ..+....+..|..+.. ...+.++++++|.+...-.
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe----EeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 5443 345678899999999888765544443321110 0111112334554432 3456788899998777766
Q ss_pred CCCCcccCCCCCCccCceEeecC--CCCcEEEE--EcCCCeeEEEECCCCEEEEeCC
Q 013152 309 NKFGQVGVGDNVDHCSPVQVKFP--LDQKVVQI--SCGWRHTLAVTERQNVFSWGRG 361 (448)
Q Consensus 309 n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~i--~~G~~h~~al~~~g~v~~wG~n 361 (448)
.++-..+.+..-. ..+.+. ....++.+ .......+++++.|.+.-.-.+
T Consensus 230 ~e~~~~~R~~kGv----~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 230 SKISELKRGATGY----TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp GGSCBCCTTCCCE----ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred HHhcccCCCCCCE----EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 6554443322110 011111 11233322 2244556677777766654433
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=54.89 E-value=1.2e+02 Score=27.12 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=96.2
Q ss_pred CCCEEEEeeCCC-----ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEE--------ccCCeeE
Q 013152 18 FRPVLLISAGAS-----HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVT--------CGADHTT 84 (448)
Q Consensus 18 ~~~i~~i~~G~~-----~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~--------~G~~~~~ 84 (448)
...|..++.... ..+.-..||.|..|-..... .....+... ...|..+. ......+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEec-ccceEEEeeccccccCCCccEEE
Confidence 445666666543 33444568888888543221 011112111 12455553 2233445
Q ss_pred EEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc---CCCCEEEEE------ecCceEEEEEcCCcEEEEECCCCCc
Q 013152 85 AYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL---HSLRVKQIA------CGDSHCLAVTVEGEVQSWGRNQNGQ 155 (448)
Q Consensus 85 ~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l---~~~~i~~I~------~G~~h~~~lt~~G~vy~wG~n~~gq 155 (448)
....+ |.|..|-...... ....+... ....+..++ ......+.-..+|.|+.|-.....
T Consensus 134 ~~~~d-~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 201 (357)
T 3i2n_A 134 TGSRD-GTVKVWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA- 201 (357)
T ss_dssp EEETT-SCEEEECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-
T ss_pred EEeCC-CeEEEEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-
Confidence 55566 9999995432210 01111111 122566665 334555666778999999754311
Q ss_pred cCCCCCCCcccceeeecccCccEEEEEeC-----CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCC
Q 013152 156 LGLGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQRE 230 (448)
Q Consensus 156 lG~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~ 230 (448)
....... ...|..++.. ....++-..+|.|+.|-......+ .......+.....
T Consensus 202 -----------~~~~~~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 202 -----------LRWETNI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT---------KGFASVSEKAHKS 260 (357)
T ss_dssp -----------EEEEEEC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT---------TEEEEEEEECCSS
T ss_pred -----------eeeecCC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc---------cceeeeccCCCcC
Confidence 1111111 2356666654 355556677899999964321000 0000001112244
Q ss_pred eEEEEEecCc---eEEEEEcCCCEEEEcCC
Q 013152 231 KMVMVACGWR---HTISVSSSGRLYSYGWS 257 (448)
Q Consensus 231 ~i~~i~~G~~---hs~~l~~~G~vy~~G~n 257 (448)
.|..++...+ ..+.-..+|.|+.|-..
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 6666666554 34445678899988654
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=54.02 E-value=1.2e+02 Score=26.83 Aligned_cols=269 Identities=14% Similarity=0.154 Sum_probs=125.5
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCC--eeEEEEcCCCEE
Q 013152 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGAD--HTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~--~~~~l~~~~g~v 93 (448)
...|..++..... .+.-..||.|..|...... ....+... ...|..++...+ ..+.-..+ +.|
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-~~i 89 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISGH-KLGISDVAWSSDSNLLVSASDD-KTL 89 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEECCC-SSCEEEEEECTTSSEEEEEETT-SEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhccC-CCceEEEEEcCCCCEEEEECCC-CEE
Confidence 3456666655433 3334478888888643211 11112111 124666665433 34444566 999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeee
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (448)
..|-...... ...+.. ....|..++... ...+.-..||.|+.|-...... ...+.
T Consensus 90 ~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~ 146 (312)
T 4ery_A 90 KIWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-----------LKTLP 146 (312)
T ss_dssp EEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-----------EEEEC
T ss_pred EEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-----------EEEec
Confidence 9996432111 011111 122455555433 4455566789999996532110 01111
Q ss_pred cccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeee-ccCCCeEEEEEe--cCceEEEEE
Q 013152 172 AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV-DLQREKMVMVAC--GWRHTISVS 246 (448)
Q Consensus 172 ~~~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~-~~~~~~i~~i~~--G~~hs~~l~ 246 (448)
.....|..++... ...+.-..+|.|..|-.... ..+..+ ......+..++. ...+.++-.
T Consensus 147 -~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 147 -AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG--------------QCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------CEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------ceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 1123466665543 34445567889999864221 011111 111223433333 334555667
Q ss_pred cCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccC---CcEEEEE-cCCCeeEEEeCCCcEEEeecCCCCcccCCCCCCc
Q 013152 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE---SFISQIS-GGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDH 322 (448)
Q Consensus 247 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~---~~i~~I~-~G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 322 (448)
.+|.|+.|-......+ ..+..... ....... .+....+.-.+||.|+.|-.....
T Consensus 212 ~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------- 270 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCL-----------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---------- 270 (312)
T ss_dssp TTTEEEEEETTTTEEE-----------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----------
T ss_pred CCCeEEEEECCCCcEE-----------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----------
Confidence 7888888864321111 01110000 0011111 223334444578999999754321
Q ss_pred cCceEeecCCCCcEEEEEcCCCeeEEEE----CCCCEEEEeC
Q 013152 323 CSPVQVKFPLDQKVVQISCGWRHTLAVT----ERQNVFSWGR 360 (448)
Q Consensus 323 ~~p~~v~~~~~~~v~~i~~G~~h~~al~----~~g~v~~wG~ 360 (448)
....-......|..+++-....++++ .|+.|..|=.
T Consensus 271 --~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 271 --IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp --EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred --hhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 11111112345777776654443332 4788888853
No 91
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.64 E-value=1.3e+02 Score=27.33 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=112.1
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEc-----cCCeeEEEEcCCCEEEEE
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTC-----GADHTTAYSESCMQVYSW 96 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~v~~-----G~~~~~~l~~~~g~v~~w 96 (448)
++....+.+++++.|++|.+-..+--..+. ...-.| ..+...++..|+.+.. ...+.+++|++ |.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~-G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATAN-GTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEE
Confidence 456778899999999999776443211111 111122 1222234556777644 23356777887 988877
Q ss_pred eCCCCCCcCCCCCCCccccee-ecccCCCCEEEE--EecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecc
Q 013152 97 GWGDFGRLGHGNSSDLFTPLP-IKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAF 173 (448)
Q Consensus 97 G~n~~g~lG~g~~~~~~~p~~-v~~l~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~ 173 (448)
-..++-.... .... +....+..++.+ ..+.++.+++|++|+++-+-...--..|...... ..+..-
T Consensus 125 ~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~ 193 (307)
T 1zi0_A 125 VLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLG 193 (307)
T ss_dssp EGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCC
T ss_pred EHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeC
Confidence 5443322110 1111 111123345543 3466789999999999999766544444322111 112222
Q ss_pred cCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEe--cCceEEEEEcCC
Q 013152 174 EGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVAC--GWRHTISVSSSG 249 (448)
Q Consensus 174 ~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~--G~~hs~~l~~~G 249 (448)
++..|+.+..- ....+++|++|.+--.-..++-.-+.+.. -.++..+......++.+.. .....++++++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 45567766532 34567778888655443333221111110 0111111111234544433 456678999999
Q ss_pred CEEEEcCCCC
Q 013152 250 RLYSYGWSKY 259 (448)
Q Consensus 250 ~vy~~G~n~~ 259 (448)
.+.-+-.++.
T Consensus 269 ~~ir~~~~~i 278 (307)
T 1zi0_A 269 TLVRTRVSEI 278 (307)
T ss_dssp CEEEEEGGGS
T ss_pred cEEEEecccc
Confidence 9887655444
No 92
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=53.43 E-value=64 Score=29.10 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEE----ecCceEEEEEcCCCEEEEcC
Q 013152 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVA----CGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~----~G~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. +++||++|-... . .......+..++........+. .-..|+++. .+++||++|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG~~~-------~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAGKDL-------Q-TEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp CSCEEEEE-TTEEEEEEEEBT-------T-TCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECC
T ss_pred cccceEEE-CCEEEEEcCccC-------C-CCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcC
Confidence 35666655 789999983211 0 0011122223333333333332 123566666 5889999995
No 93
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=53.36 E-value=1.3e+02 Score=27.39 Aligned_cols=229 Identities=12% Similarity=0.091 Sum_probs=111.5
Q ss_pred CCEEEEeeCCC-ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCee-ecCCCCCcEEEEEccCC--eeEEEEcCCCEEE
Q 013152 19 RPVLLISAGAS-HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQ-LSALDGHEIVSVTCGAD--HTTAYSESCMQVY 94 (448)
Q Consensus 19 ~~i~~i~~G~~-~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~-v~~~~~~~i~~v~~G~~--~~~~l~~~~g~v~ 94 (448)
..|.+++.... ..+.-..||.|..|--.....+ ..... ...- ...|..|+...+ +.+.-..| +.|.
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H-~~~V~~v~~spdg~~l~sgs~d-~~i~ 152 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETL--------IVSKFCKYEH-DDIVSTVSVLSSGTQAVSGSKD-ICIK 152 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECC-SSCEEEEEECTTSSEEEEEETT-SCEE
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce--------eEeeccccCC-CCCEEEEEECCCCCEEEEEeCC-CeEE
Confidence 34777765433 3444458899999954321110 00000 0011 124666665433 33444556 8899
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEecCc---eEEEEEcCCcEEEEECCCCCccCCCCCCCccccee
Q 013152 95 SWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (448)
Q Consensus 95 ~wG~n~~g~lG~g~~~~~~~p~~v~~l~--~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (448)
.|-... ...+..+. ...|..++.... ..+.-..||.|..|-......+ ..
T Consensus 153 iwd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~ 207 (344)
T 4gqb_B 153 VWDLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----------SQ 207 (344)
T ss_dssp EEETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----------EE
T ss_pred EEECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee-----------ee
Confidence 995332 12222222 236777776432 2344567899999964321110 01
Q ss_pred ee-cccCccEEEEEeCC--CeE-EEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec---CceE
Q 013152 170 LQ-AFEGVSIKMVAAGA--EHS-VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHT 242 (448)
Q Consensus 170 v~-~~~~~~i~~ia~G~--~~~-~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~hs 242 (448)
+. ......+..++... .+. +.-..||.|..|-.... ..+..+......|..++.. ..+.
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~l 273 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPFL 273 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeEE
Confidence 11 11222455555432 223 33467899999953211 1122223234467777654 2344
Q ss_pred EEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC-CeeEEE--eCCCcEEEeecC
Q 013152 243 ISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW-RHTMAV--TSDGKLYGWGWN 309 (448)
Q Consensus 243 ~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~-~h~~~l--t~~G~vy~wG~n 309 (448)
+.-..||.|+.|-.. .+++ ..... -...|..++... ...++. ..||.|..|=..
T Consensus 274 asgs~D~~i~vwd~~-~~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 274 ASLSEDCSLAVLDSS-LSEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEETTSCEEEECTT-CCEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEeCCCeEEEEECC-CCcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 455789999999432 1221 11111 123477777542 223332 468999999643
No 94
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=52.03 E-value=1.6e+02 Score=27.74 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCEEEEeeCC--CceEEE-EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCC-CCcEEEEEcc---CCeeEEEEcCC
Q 013152 18 FRPVLLISAGA--SHSVAL-LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALD-GHEIVSVTCG---ADHTTAYSESC 90 (448)
Q Consensus 18 ~~~i~~i~~G~--~~~~~l-~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~-~~~i~~v~~G---~~~~~~l~~~~ 90 (448)
..+|.+|+.-. ...+|. ..||.|.+|=.... ..+..+.... ...|..|+.. ....+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D- 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME- 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-
Confidence 45688888743 233443 48999999943211 1122222111 1246666643 2233333455
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEE--EEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCccc
Q 013152 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQ--IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (448)
Q Consensus 91 g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~--I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (448)
|.|..|-.... . ...+... ....+.. ++......+.-+.+|.|+.|-.... ++
T Consensus 187 ~~v~iwd~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~---------- 243 (435)
T 4e54_B 187 GTTRLQDFKGN-I-----------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL---------- 243 (435)
T ss_dssp SCEEEEETTSC-E-----------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC----------
T ss_pred CEEEEeeccCC-c-----------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee----------
Confidence 88988843210 0 0111110 1112222 3333445555567889999864211 00
Q ss_pred ceeeecccCccEEEEEeCC--CeEE-EEecCCcEEEeeC
Q 013152 167 PQKLQAFEGVSIKMVAAGA--EHSV-AVAEDGELYGWGW 202 (448)
Q Consensus 167 p~~v~~~~~~~i~~ia~G~--~~~~-~lt~~G~vy~wG~ 202 (448)
..+. .....|..|+... .+.+ .-..||.|..|-.
T Consensus 244 -~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 244 -WNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp -CCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred -EEEe-cccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 0011 1123577776542 2233 3357888888854
No 95
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=51.18 E-value=1.4e+02 Score=26.79 Aligned_cols=17 Identities=6% Similarity=0.084 Sum_probs=12.5
Q ss_pred CceEEEEEcCCCEEEEcC
Q 013152 239 WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 239 ~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. ++++|.+|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 35666665 789999985
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=49.22 E-value=1.4e+02 Score=26.42 Aligned_cols=247 Identities=10% Similarity=-0.016 Sum_probs=120.7
Q ss_pred cEEEEEcc--CCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--Cc-eEEEEEcCCcEE
Q 013152 72 EIVSVTCG--ADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DS-HCLAVTVEGEVQ 146 (448)
Q Consensus 72 ~i~~v~~G--~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G--~~-h~~~lt~~G~vy 146 (448)
.|..++.. ..+.++-..+ |.|+.|-..... ....+..+. .....|..++.. .. ..+.-..+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d-~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWD-GSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 46665544 3344444566 999999643221 000111111 123356666543 44 666777899999
Q ss_pred EEEC-CCCCccCCCCCCCcccceeeec-ccCccEEEEEeC-CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeee
Q 013152 147 SWGR-NQNGQLGLGTTEDSLVPQKLQA-FEGVSIKMVAAG-AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (448)
Q Consensus 147 ~wG~-n~~gqlG~~~~~~~~~p~~v~~-~~~~~i~~ia~G-~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 223 (448)
.|-. .. +++ ..+.. .....|..++.. ....+.-..+|.|+.|-......- ........+.
T Consensus 83 ~wd~~~~-~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~ 145 (342)
T 1yfq_A 83 KVDLIGS-PSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG-----VIAVKNLNSN 145 (342)
T ss_dssp EECSSSS-SSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-----CEEEEESCSS
T ss_pred EEEeccC-Cce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc-----cccccCCeee
Confidence 9954 32 111 11111 012346555543 556666678899999953210000 0000000011
Q ss_pred eeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC---CeeEEEeCC
Q 013152 224 TVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSD 300 (448)
Q Consensus 224 ~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~h~~~lt~~ 300 (448)
.+. ....|..++......++...+|.|+.|-....+.. ............|..|+... ...++-..+
T Consensus 146 ~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 215 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSID 215 (342)
T ss_dssp SSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred EEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecC
Confidence 111 13456677766666666778899999975431111 01111111222366655543 455556778
Q ss_pred CcEEEeecCCCCcccCCCCCCccCceEeecCC--------CCcEEEEEcC--CCeeEEEECCCCEEEEeC
Q 013152 301 GKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL--------DQKVVQISCG--WRHTLAVTERQNVFSWGR 360 (448)
Q Consensus 301 G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~--------~~~v~~i~~G--~~h~~al~~~g~v~~wG~ 360 (448)
|.+..|-....+. .........+.... ...|..++.. ....+.-..+|.|+.|=.
T Consensus 216 g~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 216 GRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp SEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 9999987654310 00000111111110 1256666553 333445567899999964
No 97
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=48.92 E-value=1.4e+02 Score=26.32 Aligned_cols=166 Identities=15% Similarity=0.161 Sum_probs=79.1
Q ss_pred CCCCEEEEEec-CceEEEEEcCCc-EEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeEEEEecCCc-EE
Q 013152 122 HSLRVKQIACG-DSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHSVAVAEDGE-LY 198 (448)
Q Consensus 122 ~~~~i~~I~~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~~~lt~~G~-vy 198 (448)
.+-++.-..++ ....++++.+|+ ++.|+.... + ......|..+....+-++.-.........+++.+|+ +|
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 34456555566 566777788887 466654211 0 001111222222333344434445556667776776 35
Q ss_pred EeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcC-CC-EEEEcCCCCCCCCCCCCCCceeeeee
Q 013152 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSS-GR-LYSYGWSKYGQLGHGDFKDHLVPCQL 276 (448)
Q Consensus 199 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~-G~-vy~~G~n~~gqlg~~~~~~~~~p~~v 276 (448)
.++.. ..|.-+..+. +.++.-........++++.+ |+ +|.++.+...- .....|.-+
T Consensus 160 ~~~~~-------------~~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~ 218 (276)
T 3no2_A 160 SVKLS-------------GTPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQL 218 (276)
T ss_dssp EEECS-------------SCCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEE
T ss_pred EEECC-------------CCccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccc
Confidence 55431 0122222221 33444333333346677766 76 56666432110 011224444
Q ss_pred ccccCCcEEEEEc--C---------CCeeEEEeCCCcEEEeecCCCCcccC
Q 013152 277 EALRESFISQISG--G---------WRHTMAVTSDGKLYGWGWNKFGQVGV 316 (448)
Q Consensus 277 ~~~~~~~i~~I~~--G---------~~h~~~lt~~G~vy~wG~n~~GqLG~ 316 (448)
..+.+-.+. |+. | ..+.+.++.+|+| .|=.+....+|.
T Consensus 219 ~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 219 FPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 444443333 333 2 3357778888887 676666665554
No 98
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=47.19 E-value=1.7e+02 Score=26.86 Aligned_cols=223 Identities=10% Similarity=-0.009 Sum_probs=106.6
Q ss_pred CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCC
Q 013152 29 SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGH 106 (448)
Q Consensus 29 ~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~ 106 (448)
...+.-..||.|..|-... ..+......-...|..++... .+.+.-..+ +.|+.|-......
T Consensus 110 ~~l~~~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~--- 173 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNF------------NLQREIDQAHVSEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSN--- 173 (420)
T ss_dssp CEEEEEETTSCEEEECTTS------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCC---
T ss_pred CEEEEEECCCCEEEEeCCC------------cceeeecccccCccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcC---
Confidence 3444445778888884321 111111111123577766643 344555566 9999996443211
Q ss_pred CCCCCcccceeecccCCCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeec--ccCccEEEEE
Q 013152 107 GNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA--FEGVSIKMVA 182 (448)
Q Consensus 107 g~~~~~~~p~~v~~l~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~--~~~~~i~~ia 182 (448)
...+.. ....|..++.. ....+....||.|..|-......+. .+.. .....|..++
T Consensus 174 --------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~v~~~~ 233 (420)
T 3vl1_A 174 --------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH-----------TFNRKENPHDGVNSIA 233 (420)
T ss_dssp --------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-----------EECBTTBTTCCEEEEE
T ss_pred --------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE-----------EeecCCCCCCCccEEE
Confidence 111211 12356666654 3455666788999999654321110 0000 0011122221
Q ss_pred ---------------------e--CCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC
Q 013152 183 ---------------------A--GAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW 239 (448)
Q Consensus 183 ---------------------~--G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~ 239 (448)
. ...+.++-..+|.|+.|-..... ....+ .......|..++...
T Consensus 234 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~--~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQL--PSKFTCSCNSLTVDG 300 (420)
T ss_dssp EEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEE--CCTTSSCEEEEEECS
T ss_pred EecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEc--ccccCCCceeEEEeC
Confidence 1 12234445678888888532210 11111 111123566666544
Q ss_pred c---eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEE-EeCCCcEEEeecCC
Q 013152 240 R---HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMA-VTSDGKLYGWGWNK 310 (448)
Q Consensus 240 ~---hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~-lt~~G~vy~wG~n~ 310 (448)
. +.+.-..+|.|+.|-.....++ ...+..-....|..+.......++ -..||.|..|-...
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSPECP----------VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCcCc----------hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 3 5556678899999965332210 111111122335555544444333 34688999997654
No 99
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=47.08 E-value=42 Score=30.90 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE-----EecCceEEEEEcCCCEEEEcC
Q 013152 185 AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-----ACGWRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 185 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-----~~G~~hs~~l~~~G~vy~~G~ 256 (448)
..|++++. +++||++|-.... + .........+..++........+ ..-..|+++. .+++||++|-
T Consensus 57 ~~~~~~~~-~~~lyv~GG~~~~--~---~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 57 DQATSAFI-DGNLYVFGGIGKN--S---EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp BSCEEEEE-TTEEEEECCEEEC--T---TSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEEC
T ss_pred ccceEEEE-CCEEEEEcCCCCC--C---CccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeC
Confidence 45666665 7899999832000 0 00001111122222223333332 2234677666 6899999994
No 100
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.14 E-value=1.8e+02 Score=26.45 Aligned_cols=218 Identities=11% Similarity=0.026 Sum_probs=112.1
Q ss_pred EEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CceEEEEEcCCcEEEEEC
Q 013152 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (448)
Q Consensus 76 v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G-----~~h~~~lt~~G~vy~wG~ 150 (448)
++...++.+++|+. |++|.+-..+--..+..... ......+....+.+|+.+... ..+.+++|++|.++-.--
T Consensus 54 ~~~~~~~ll~~T~~-G~~~~~~~~~ip~~~r~~~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNE-GKLYLINAYEIKDSSRASKG-QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETT-SEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CeEEEEEHHHCCCCCccCCC-cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 44456778888888 99999865433222211100 011112333346678877654 456899999999998865
Q ss_pred CCCCcc-CCCCCCCcccceeeecccCccEEEEE--eCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeecc
Q 013152 151 NQNGQL-GLGTTEDSLVPQKLQAFEGVSIKMVA--AGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDL 227 (448)
Q Consensus 151 n~~gql-G~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~ 227 (448)
..+-.. +.+. ..+..-++..++.+. .+..+.+++|++|.+.-+-..+.-..|..... .+...+.
T Consensus 132 ~~~~~~r~~G~-------~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G-----v~~i~L~- 198 (312)
T 1suu_A 132 TDFKAVKSRGV-------IVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG-----VCGMKLK- 198 (312)
T ss_dssp GGGCC----CE-------ECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC-----EECCCCC-
T ss_pred HHhhccCCCcE-------EEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC-----eEeEEeC-
Confidence 443111 0000 001111234455443 35678899999999998876554333332111 1111111
Q ss_pred CCCeEEEEEe--cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEE--EEcCCCeeEEEeCCCcE
Q 013152 228 QREKMVMVAC--GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKL 303 (448)
Q Consensus 228 ~~~~i~~i~~--G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~h~~~lt~~G~v 303 (448)
.+..|+.+.. ...+.++++++|.+..+-.+++-..+.+...... . .+..-.+..+.. ........+++++.|.+
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~-~-~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~ 276 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTS-Y-KKSDKKAGSVVDAIAVSEDDEILLVSKRSKA 276 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-S-CTTCTTTCSEEEEEEECTTCEEEEEETTCEE
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEe-e-EccCCCCCeEEEEEEeCCCCEEEEEeCCCeE
Confidence 1345555443 3456788899998777766666444433211100 0 000001112332 22355667788888877
Q ss_pred EEeecCC
Q 013152 304 YGWGWNK 310 (448)
Q Consensus 304 y~wG~n~ 310 (448)
.-.-.++
T Consensus 277 ~r~~~~~ 283 (312)
T 1suu_A 277 LRTVAGK 283 (312)
T ss_dssp EEEEGGG
T ss_pred EEEEccc
Confidence 6554443
No 101
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=42.86 E-value=2.4e+02 Score=27.30 Aligned_cols=220 Identities=18% Similarity=0.227 Sum_probs=106.1
Q ss_pred cEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CceEEEEEcCCcEEE
Q 013152 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQS 147 (448)
Q Consensus 72 ~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G--~~h~~~lt~~G~vy~ 147 (448)
.|..++... ...+....+ +.|..|-.+.. ....+.. ....|..++.. ..+.+.-..+|.|..
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d-~~i~~w~~~~~------------~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDD-KTVKLWNRNGQ------------HLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp CEEEEEECTTSSEEEEEETT-SCEEEEETTSC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CeEEEEECCCCCEEEEEeCC-CeEEEEeCCCC------------eeEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 466665543 333444556 88888853211 1111111 12356666544 345556678888888
Q ss_pred EECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeee
Q 013152 148 WGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATV 225 (448)
Q Consensus 148 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~ 225 (448)
|-.+. ++ ...+.. ....|..++... ...+.-..++.|+.|-.+ ++ .+..+
T Consensus 371 ~~~~~--~~----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~-------------~~~~~ 422 (577)
T 2ymu_A 371 WNRNG--QL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQ-------------LLQTL 422 (577)
T ss_dssp EETTC--CE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CC-------------EEEEE
T ss_pred EcCCC--CE----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CC-------------EEEEe
Confidence 85321 11 111111 123566666543 344445678889888421 11 11222
Q ss_pred ccCCCeEEEEEecC--ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCe--eEEEeCCC
Q 013152 226 DLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRH--TMAVTSDG 301 (448)
Q Consensus 226 ~~~~~~i~~i~~G~--~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h--~~~lt~~G 301 (448)
......|..++... ...+.-..++.|+.|-.+ +++ ...+.. ....|..++...+. .+.-..++
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~----------~~~~~~-~~~~v~~~~~spd~~~las~~~d~ 489 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDK 489 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSCEEEEEETTS
T ss_pred cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCE----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 22234555555432 333444577888888431 111 111111 12336666554333 23335788
Q ss_pred cEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCC--CeeEEEECCCCEEEEe
Q 013152 302 KLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW--RHTLAVTERQNVFSWG 359 (448)
Q Consensus 302 ~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~--~h~~al~~~g~v~~wG 359 (448)
.|+.|-.+ |++ ...+. .....|..++... ...+.-..||.|+.|=
T Consensus 490 ~i~iw~~~--~~~----------~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 490 TVKLWNRN--GQL----------LQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEEETT--SCE----------EEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEcCC--CCE----------EEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 89988632 221 11111 1234566666543 3334445788899993
No 102
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=42.21 E-value=2e+02 Score=26.13 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=88.2
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC----CeEEEEecCCcEE
Q 013152 125 RVKQIACGD--SHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA----EHSVAVAEDGELY 198 (448)
Q Consensus 125 ~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~----~~~~~lt~~G~vy 198 (448)
.|..++... ...+.-..||.|..|-...... ...+.. ....|..++... ...+.-..||.|+
T Consensus 156 ~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 156 YLSACSFTNSDMQILTASGDGTCALWDVESGQL-----------LQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------EEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 455555433 3556667889999996533110 011111 122455444322 3445556799999
Q ss_pred EeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec--CceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeee
Q 013152 199 GWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQL 276 (448)
Q Consensus 199 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v 276 (448)
.|-... ...+..+......|..++.. ....+.-..||.|..|-.....++ ...
T Consensus 224 ~wd~~~--------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~-----------~~~ 278 (354)
T 2pbi_B 224 VWDMRS--------------GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV-----------AIY 278 (354)
T ss_dssp EEETTT--------------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEE
T ss_pred EEECCC--------------CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEE
Confidence 996422 11122222223456666553 234444567888888864321111 000
Q ss_pred ccc-cCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCC--eeEEEEC
Q 013152 277 EAL-RESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR--HTLAVTE 351 (448)
Q Consensus 277 ~~~-~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--h~~al~~ 351 (448)
... ....+..++.. ....+.-..+|.|+.|-..... +...-......|..++...+ +.+.-..
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS------------RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc------------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 000 01124444432 3344445678889998643211 11111122345655554432 3333446
Q ss_pred CCCEEEE
Q 013152 352 RQNVFSW 358 (448)
Q Consensus 352 ~g~v~~w 358 (448)
||.|..|
T Consensus 347 D~~v~vW 353 (354)
T 2pbi_B 347 DHTLRVW 353 (354)
T ss_dssp TSEEEEE
T ss_pred CCCEEec
Confidence 7777777
No 103
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=41.89 E-value=2e+02 Score=26.09 Aligned_cols=194 Identities=8% Similarity=0.013 Sum_probs=100.2
Q ss_pred CCCCEEEEeeCCCc---eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecC-CCCCcEEEEEccC---CeeEEEEcC
Q 013152 17 PFRPVLLISAGASH---SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSA-LDGHEIVSVTCGA---DHTTAYSES 89 (448)
Q Consensus 17 ~~~~i~~i~~G~~~---~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-~~~~~i~~v~~G~---~~~~~l~~~ 89 (448)
-...|..++..... .+.-..||.|.+|-.... .....+.. -....|..++... ...+....+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 34667777765543 444447888998864321 11112211 1224577777654 344444566
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccC--CCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccCCCCCCCcc
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--SLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSL 165 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~--~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 165 (448)
+.|..|-... . ....+.... ...|..++.. ....+.-..+|.|+.|-... +
T Consensus 141 -~~i~iwd~~~-~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~---------- 195 (383)
T 3ei3_B 141 -GATTLRDFSG-S-----------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H---------- 195 (383)
T ss_dssp -TEEEEEETTS-C-----------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C----------
T ss_pred -CEEEEEECCC-C-----------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C----------
Confidence 9999996431 0 111111111 1235555543 45566667889999997521 1
Q ss_pred cceeeecccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC---
Q 013152 166 VPQKLQAFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--- 239 (448)
Q Consensus 166 ~p~~v~~~~~~~i~~ia~G~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--- 239 (448)
....+. .....|..++...+ ..+.-..||.|+.|-....... .. .+..+. ....|..++...
T Consensus 196 ~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------~~--~~~~~~-~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 196 EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--------NS--YIAEMP-HEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--------TC--EEEEEE-CSSCEEEEEECTTTS
T ss_pred EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--------cc--eEEEec-CCCceEEEEEcCCCC
Confidence 011111 12235777766544 3444567889999964321100 01 111111 234666666543
Q ss_pred ceEEEEEcCCCEEEEcCCC
Q 013152 240 RHTISVSSSGRLYSYGWSK 258 (448)
Q Consensus 240 ~hs~~l~~~G~vy~~G~n~ 258 (448)
.+.+.-..+|.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4555566788999996543
No 104
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=41.29 E-value=1.9e+02 Score=25.52 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=83.3
Q ss_pred eEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCceEEEEEcCCcEEEEECCCCCccCCCC
Q 013152 83 TTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGT 160 (448)
Q Consensus 83 ~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~ 160 (448)
.++++++ |.+-.-....++. ..+..-.+..+..+ +...++.+++|+.|++|..-....... .
T Consensus 5 ~v~lT~~-G~iKr~~~~~~~~------------~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r-- 68 (256)
T 1zvt_A 5 TIVLSQM-GWVRSAKGHDIDA------------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-R-- 68 (256)
T ss_dssp EEEEETT-SEEEEEESSCCCS------------TTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS-S--
T ss_pred EEEEeCC-CEEEEeeCCcCCc------------eeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc-C--
Confidence 4567777 8876554322210 11111123345443 455678999999999999875442111 1
Q ss_pred CCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEE-E-
Q 013152 161 TEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMV-A- 236 (448)
Q Consensus 161 ~~~~~~p~~v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-~- 236 (448)
..-......+...++.+|+.+... ..+.+++|++|.+.-.-..++-... ..-..+..+.. +..++.+ .
T Consensus 69 ~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~-------r~G~~~i~L~~-~d~lv~~~~~ 140 (256)
T 1zvt_A 69 GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-------RAGKALITLPE-NAHVMPPVVI 140 (256)
T ss_dssp SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCS-------TTCEECBCCCT-TCCBCCCEEC
T ss_pred CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccC-------cCceEEEEECC-CCEEEEEEEe
Confidence 111111112333346678887663 4457888999988766544431110 00111111111 2233332 2
Q ss_pred -ecCceEEEEEcCCCEEEEcCCCCCCCCC
Q 013152 237 -CGWRHTISVSSSGRLYSYGWSKYGQLGH 264 (448)
Q Consensus 237 -~G~~hs~~l~~~G~vy~~G~n~~gqlg~ 264 (448)
.+..+.++++++|++..+-.++.-.+|.
T Consensus 141 ~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 141 EDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred cCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 2567889999999998887655544443
No 105
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=40.81 E-value=1.9e+02 Score=25.46 Aligned_cols=280 Identities=11% Similarity=0.045 Sum_probs=121.4
Q ss_pred CCCEEEEeeCCCc-eEEE--EcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCE
Q 013152 18 FRPVLLISAGASH-SVAL--LSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQ 92 (448)
Q Consensus 18 ~~~i~~i~~G~~~-~~~l--~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~ 92 (448)
...|..|+.-... .+++ ..||.|.+|--.... .....|.....--...|..+.... .+.+.-..| +.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-~~ 109 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GT 109 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-SE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-cc
Confidence 3467788765332 2333 378999999643211 011112111111113466665543 344444566 88
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceee
Q 013152 93 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKL 170 (448)
Q Consensus 93 v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v 170 (448)
|+.|-...... ...... ....+..+ .......+.-..||.+..|-....... ...
T Consensus 110 i~~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~-----------~~~ 166 (340)
T 4aow_A 110 LRLWDLTTGTT----------TRRFVG--HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY-----------TVQ 166 (340)
T ss_dssp EEEEETTTTEE----------EEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-----------EEC
T ss_pred ceEEeecccce----------eeeecC--CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-----------EEE
Confidence 88886433211 111111 11122222 223344455567888888853321110 000
Q ss_pred ecccCccEEEEEe--CCCe--EEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--ceEEE
Q 013152 171 QAFEGVSIKMVAA--GAEH--SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTIS 244 (448)
Q Consensus 171 ~~~~~~~i~~ia~--G~~~--~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~ 244 (448)
.......+..++. .... .+.-..++.|+.|-... ...+..+......|..++... ...+.
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCCEEEE
Confidence 0001123333332 2222 23334678888885321 111222222233566655433 23344
Q ss_pred EEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC-CCeeEEEeCCCcEEEeecCCCCcccCCCCCCcc
Q 013152 245 VSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 323 (448)
Q Consensus 245 l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~ 323 (448)
-..||.|..|-.....++ ..+.. ...|..+... ..+.++...++.|+.|-....-.+..-...
T Consensus 233 ~s~Dg~i~iwd~~~~~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--- 296 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHL-----------YTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE--- 296 (340)
T ss_dssp EETTCEEEEEETTTTEEE-----------EEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred EeCCCeEEEEEeccCcee-----------eeecC--CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccc---
Confidence 457788888854322111 11111 1224444433 334555667888888864432111000000
Q ss_pred CceEeecCCCCcEEEEEcCCC--eeEEEECCCCEEEE
Q 013152 324 SPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (448)
Q Consensus 324 ~p~~v~~~~~~~v~~i~~G~~--h~~al~~~g~v~~w 358 (448)
............|..++...+ ..+.-..||.|+.|
T Consensus 297 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp -------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 000000111245666655433 33334578888888
No 106
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.58 E-value=2.2e+02 Score=25.81 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=108.5
Q ss_pred EEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEe-----CCCeEEEEecCCcEEEeeCC
Q 013152 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAA-----GAEHSVAVAEDGELYGWGWG 203 (448)
Q Consensus 129 I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~-----G~~~~~~lt~~G~vy~wG~n 203 (448)
++...++.+++|+.|++|..-...-...+....- ......+...++++|+.+.. ...+.+++|++|.+.-.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G-~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG-RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC-EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC-eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 4567788999999999999976553333221111 11111222234567777654 23357788999988766433
Q ss_pred CCCCCCCCCCCCccceeeeeeeccCCCeEEEE--EecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccC
Q 013152 204 RYGNLGLGDRNDRLIPEKVATVDLQREKMVMV--ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRE 281 (448)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i--~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~ 281 (448)
++-... . .......+.. +..++.+ ..+..+.++++++|+++.+-..+--.+|...... ..+..-.+
T Consensus 128 e~~~~~------r-~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~~~ 195 (307)
T 1zi0_A 128 EFNRLR------T-AGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLGEG 195 (307)
T ss_dssp GGTTCC------T-TCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCCTT
T ss_pred Hhhccc------c-CCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeCCC
Confidence 321111 0 0111111111 2344433 3356788899999999988765544444322111 11222234
Q ss_pred CcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-CCcEEEEEc--CCCeeEEEECCCCEE
Q 013152 282 SFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQISC--GWRHTLAVTERQNVF 356 (448)
Q Consensus 282 ~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~i~~--G~~h~~al~~~g~v~ 356 (448)
..|+.+..- ....+++|++|.+--.-...|-.-+.+..- -..+.+.. ...++.+.. .....++++++|.+.
T Consensus 196 d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG----~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 196 DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG----VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC----EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC----EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 556666432 234666777776444333322111111000 00111111 134444333 456678889999888
Q ss_pred EEeCCC
Q 013152 357 SWGRGT 362 (448)
Q Consensus 357 ~wG~n~ 362 (448)
-.--++
T Consensus 272 r~~~~~ 277 (307)
T 1zi0_A 272 RTRVSE 277 (307)
T ss_dssp EEEGGG
T ss_pred EEeccc
Confidence 665444
No 107
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=39.49 E-value=2.1e+02 Score=25.58 Aligned_cols=252 Identities=8% Similarity=-0.060 Sum_probs=114.3
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCEE
Q 013152 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~v 93 (448)
...|..++..... .++-..||.|+.|-.... + ......+... ...|..++.. ....+....+ |.|
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~--------~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d-g~i 76 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-K--------WVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTD-RNA 76 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-E--------EEEEEEEECC-SSCEEEEEEETTTTEEEEEETT-SCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-c--------EEeeeeecCC-CCcccEEEEeCCCCEEEEEcCC-CeE
Confidence 3445555554332 222337888888853221 0 0011111111 1246655544 3344445566 888
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec--CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeee
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG--DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQ 171 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~ 171 (448)
+.|-.... ...+.....-....|..++.. ....+....+|.|+.|-...... ......+.
T Consensus 77 ~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--------~~~~~~~~ 138 (372)
T 1k8k_C 77 YVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--------WWVCKHIK 138 (372)
T ss_dssp EEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------EEEEEEEC
T ss_pred EEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------ceeeeeee
Confidence 88853211 011111111123356666654 34555667789998886433210 00111111
Q ss_pred cccCccEEEEEeCC--CeEEEEecCCcEEEeeCCCCCCCCCCCC----CCccceeeeeeeccCCCeEEEEEecC--ceEE
Q 013152 172 AFEGVSIKMVAAGA--EHSVAVAEDGELYGWGWGRYGNLGLGDR----NDRLIPEKVATVDLQREKMVMVACGW--RHTI 243 (448)
Q Consensus 172 ~~~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~----~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~ 243 (448)
......|..++... ...+.-..+|.|+.|-......-..... ........+..+......|..++... .+.+
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 11133566666543 3445556789999997432110000000 00011122222222234566655533 3555
Q ss_pred EEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC-CCeeEEEeCCCcEEEeecCC
Q 013152 244 SVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG-WRHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 244 ~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~ 310 (448)
....+|.|+.|-...... ...+. .....|..++.. ....++...+|.|+.|-...
T Consensus 219 ~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 219 WVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 556788888885432111 11111 112235555432 33455556788888887544
No 108
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=38.30 E-value=2.2e+02 Score=25.49 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=12.2
Q ss_pred ceEEEEEcCCCEEEEcC
Q 013152 240 RHTISVSSSGRLYSYGW 256 (448)
Q Consensus 240 ~hs~~l~~~G~vy~~G~ 256 (448)
-+.++++.+|.||+...
T Consensus 294 p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEEECTTSEEEEEES
T ss_pred eeEEEECCCCCEEEEEC
Confidence 35677888888887654
No 109
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=37.81 E-value=1.5e+02 Score=23.56 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=62.3
Q ss_pred cCccEEEEEeCC-CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec-CceEEEEEcCCCE
Q 013152 174 EGVSIKMVAAGA-EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG-WRHTISVSSSGRL 251 (448)
Q Consensus 174 ~~~~i~~ia~G~-~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G-~~hs~~l~~~G~v 251 (448)
+....+++.|-. .+.+-+..||.|-.-.. ..+...--.+.... ..++.|.|- ..+.+++..+|+|
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~----------~~~~~s~lei~sv~---~G~V~L~g~~sg~yL~mn~~G~l 94 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRD----------RSDTHIQFQISPEG---NGEVLLKSTETGQYLRINPDGTV 94 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECC----------TTCGGGCEEEEEEE---TTEEEEEETTTTEEEEECTTSBE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecC----------CCCCceEEEEEEcc---CCEEEEEEecCCEEEeECCCCCE
Confidence 345678898876 67777888999985532 11222222333332 357788875 5678899999999
Q ss_pred EEEcCCCCCCCCCCCCCCceeeeeec--cccCCcEEEEEcCCCeeEEEeCCCcEEE
Q 013152 252 YSYGWSKYGQLGHGDFKDHLVPCQLE--ALRESFISQISGGWRHTMAVTSDGKLYG 305 (448)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~--~~~~~~i~~I~~G~~h~~~lt~~G~vy~ 305 (448)
|.--. . .+.....++. ......|+.+..| ..++++.+|++|+
T Consensus 95 ~Gs~~--~--------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 95 DGTRD--R--------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp EEECC--T--------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred eeccc--C--------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 97422 1 1111111211 1122223333344 4889999999985
No 110
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=37.06 E-value=2.4e+02 Score=25.66 Aligned_cols=241 Identities=8% Similarity=0.021 Sum_probs=111.4
Q ss_pred cEEEEEccCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec---CceEEEEEcCCcEE
Q 013152 72 EIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG---DSHCLAVTVEGEVQ 146 (448)
Q Consensus 72 ~i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G---~~h~~~lt~~G~vy 146 (448)
.|..++...+ ..+.-..+ |.|..|-...... + ..+..........|..++.. ....+.-..||.|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~d-g~v~vw~~~~~~~-~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDN-GSLELYSTNEANN-A-------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESS-SCEEEECCSSTTS-C-------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ceEEEEECCCCCeEEEEccC-CeEEEeecccccc-c-------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 4666665433 33344456 9999995433100 0 00111111112356666654 34555566789999
Q ss_pred EEECCCCCccCCCCCCCcccceeee--cccCccEEEEEeCCC---eEEEEecCCcEEEeeCCCCCCCCCCCCCCccceee
Q 013152 147 SWGRNQNGQLGLGTTEDSLVPQKLQ--AFEGVSIKMVAAGAE---HSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEK 221 (448)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~ia~G~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 221 (448)
.|-......... ...+..+. ......|..++...+ ..+.-..+|.|+.|-... ...
T Consensus 140 iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--------------~~~ 200 (416)
T 2pm9_A 140 IWDMNKCTESPS-----NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA--------------KKE 200 (416)
T ss_dssp BCBTTTTSSCTT-----TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT--------------TEE
T ss_pred EEECCCCccccc-----cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC--------------CCc
Confidence 996544220000 00011110 011224555555433 333445788999996432 111
Q ss_pred eeeeccC------CCeEEEEEecCc---eEEEEEcCC---CEEEEcCCCCCCCCCCCCCCceeeeeecc-ccCCcEEEEE
Q 013152 222 VATVDLQ------REKMVMVACGWR---HTISVSSSG---RLYSYGWSKYGQLGHGDFKDHLVPCQLEA-LRESFISQIS 288 (448)
Q Consensus 222 v~~~~~~------~~~i~~i~~G~~---hs~~l~~~G---~vy~~G~n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~I~ 288 (448)
+..+... ...|..++.... ..+.-..+| .|+.|-.....+ +..... .....|..++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSLD 269 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEEE
Confidence 2122211 234555554432 344445555 777775433211 111111 1123366666
Q ss_pred c---CCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCC---eeEEEECCCCEEEEeCCC
Q 013152 289 G---GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWR---HTLAVTERQNVFSWGRGT 362 (448)
Q Consensus 289 ~---G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~---h~~al~~~g~v~~wG~n~ 362 (448)
. .....+.-..+|.|+.|-....- +...-......|..++.... ..+.-..||.|..|--..
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAE------------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCC------------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCc------------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 4 34555566778999999644321 11111111234444444432 333334678899997654
Q ss_pred C
Q 013152 363 N 363 (448)
Q Consensus 363 ~ 363 (448)
.
T Consensus 338 ~ 338 (416)
T 2pm9_A 338 L 338 (416)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=36.80 E-value=2.7e+02 Score=26.08 Aligned_cols=125 Identities=13% Similarity=0.091 Sum_probs=67.9
Q ss_pred EeeCCCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCC--eeecCCCCCcEEEEEcc-----CCeeEEEEcCCCEEEEE
Q 013152 24 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSP--TQLSALDGHEIVSVTCG-----ADHTTAYSESCMQVYSW 96 (448)
Q Consensus 24 i~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P--~~v~~~~~~~i~~v~~G-----~~~~~~l~~~~g~v~~w 96 (448)
++.+..+.+++++.|++|-+--..--..+. ...-.| ..++.-.+..|+.+..- ..+.+++|+. |.+.-.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~-G~vKrt 128 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRN-GTVKKT 128 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETT-SEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCC-CeEEEe
Confidence 344566688899999999775332111111 111111 11222345678776653 3467788887 988887
Q ss_pred eCCCCCCcCCCCCCCcccceeecccCCCCEEEE--EecCceEEEEEcCCcEEEEECCCCCccCC
Q 013152 97 GWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQI--ACGDSHCLAVTVEGEVQSWGRNQNGQLGL 158 (448)
Q Consensus 97 G~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I--~~G~~h~~~lt~~G~vy~wG~n~~gqlG~ 158 (448)
-...+-... ... -..+..-.+..++.+ ..+..+.+++|++|++.-+-.+.--.+|.
T Consensus 129 ~l~e~~~~~---~~G---~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 129 PLSEFAFRL---ARG---KIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp EGGGGCSCC---TTC---EESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHhhccc---CCc---eEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 655443211 000 011111123344443 34667899999999999886554444443
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=36.67 E-value=4.5e+02 Score=28.61 Aligned_cols=148 Identities=12% Similarity=0.071 Sum_probs=73.0
Q ss_pred CCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC--CeeEEEEcCCCEE
Q 013152 18 FRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA--DHTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~--~~~~~l~~~~g~v 93 (448)
...|..++..... .+.-..||.|..|-...... ...+... ...|..++... .+.+....+ |.|
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d-~~v 681 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------LLDIKAH-EDEVLCCAFSSDDSYIATCSAD-KKV 681 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCC-SSCEEEEEECTTSSEEEEEETT-SEE
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------EEEeccC-CCCEEEEEEecCCCEEEEEeCC-CeE
Confidence 3456555554333 23334777888886432211 1111111 13466666543 344445566 999
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC--c--eEEEEEcCCcEEEEECCCCCccCCCCCCCccccee
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD--S--HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQK 169 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~--~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~ 169 (448)
..|-...... ...+. .....|..++... . ..+.-..||.|..|-......+ ..
T Consensus 682 ~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-----------~~ 738 (1249)
T 3sfz_A 682 KIWDSATGKL-----------VHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-----------NT 738 (1249)
T ss_dssp EEEETTTCCE-----------EEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-----------EE
T ss_pred EEEECCCCce-----------EEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-----------he
Confidence 9996432111 01111 1233566666543 3 2334467899999965432110 11
Q ss_pred eecccCccEEEEEeCC--CeEEEEecCCcEEEeeC
Q 013152 170 LQAFEGVSIKMVAAGA--EHSVAVAEDGELYGWGW 202 (448)
Q Consensus 170 v~~~~~~~i~~ia~G~--~~~~~lt~~G~vy~wG~ 202 (448)
+.. ....|..++... ...+.-..||.|..|-.
T Consensus 739 ~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 739 MFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp ECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEG
T ss_pred ecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeC
Confidence 111 122455555433 34555567889999953
No 113
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.40 E-value=2.8e+02 Score=26.09 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=9.1
Q ss_pred eEEEEEcCCCEEEEc
Q 013152 241 HTISVSSSGRLYSYG 255 (448)
Q Consensus 241 hs~~l~~~G~vy~~G 255 (448)
..++++.+|++|..-
T Consensus 326 ~gia~d~dG~lyvad 340 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVD 340 (409)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred eEEEEeCCCCEEEEe
Confidence 456666667766653
No 114
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=35.48 E-value=1.6e+02 Score=23.06 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=53.0
Q ss_pred EEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEE-eCCCeEEEEecCCcEEEeeCCC
Q 013152 126 VKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA-AGAEHSVAVAEDGELYGWGWGR 204 (448)
Q Consensus 126 i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia-~G~~~~~~lt~~G~vy~wG~n~ 204 (448)
+.--.|...+-+-+..||+|-.-..... ...--.+..... .++.|. .-..+.+++..+|+||+--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~~----------~~s~l~~~~v~~-G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRSD----------PGIQFQISPEGN-GEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTTC----------GGGCEEEEEEET-TEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred heeeeccCcEEEEECCCCcEEeecCCCC----------CCcEEEEEeccc-CEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 3334566666777888999986543210 111111111111 244443 34456788889999996421
Q ss_pred CCCCCCCCCCCccceeeeeeeccCCCeEEEE-EecCceEEEEEcCCCEEEE
Q 013152 205 YGNLGLGDRNDRLIPEKVATVDLQREKMVMV-ACGWRHTISVSSSGRLYSY 254 (448)
Q Consensus 205 ~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i-~~G~~hs~~l~~~G~vy~~ 254 (448)
..+.....++..... ..+.+ ..-....++++.+|++|.-
T Consensus 75 --------~s~ec~flE~~~~~~---g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEGN---GEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp ---------CCGGGCEEEEEEET---TEEEEEETTTCCEEEECTTSBEEEE
T ss_pred --------CCCCceeEEEEeecC---cEEEEEeccCCeEEEECCCCcCcCC
Confidence 111122222222221 22222 2223347899999999963
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=33.92 E-value=2.3e+02 Score=24.50 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=69.7
Q ss_pred CCceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCC--CCCcEEEEEccCC--eeEEEEcCCCEEEEEeCCCCCC
Q 013152 28 ASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCGAD--HTTAYSESCMQVYSWGWGDFGR 103 (448)
Q Consensus 28 ~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~--~~~~i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~ 103 (448)
....+++-.|+.|+.|=... |+ ...+..+ ....|..|+...+ +.+.-..| |.|..|-......
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t-g~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-g~v~iw~~~~~~~ 101 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-AEVQLWDVQQQKR 101 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEE
T ss_pred CCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECC-CcEEEeecCCcee
Confidence 34467777899999995332 21 1111111 1234666666543 33444566 9999995432211
Q ss_pred cCCCCCCCcccceeecccCCCCEEEEEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEE-
Q 013152 104 LGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVA- 182 (448)
Q Consensus 104 lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia- 182 (448)
..........+..++......+.-..++.+..|-....... . ..+.. ....+..++
T Consensus 102 ------------~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~---------~-~~~~~-~~~~~~~~~~ 158 (318)
T 4ggc_A 102 ------------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH---------V-ATLSG-HSQEVCGLRW 158 (318)
T ss_dssp ------------EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE---------E-EEEEC-CSSCEEEEEE
T ss_pred ------------EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee---------E-EEEcC-ccCceEEEEE
Confidence 11111112345666666666666667777777754332110 0 01111 111233333
Q ss_pred -eCCCeEEEEecCCcEEEeeC
Q 013152 183 -AGAEHSVAVAEDGELYGWGW 202 (448)
Q Consensus 183 -~G~~~~~~lt~~G~vy~wG~ 202 (448)
....+.+.-..||.|..|-.
T Consensus 159 ~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 159 APDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCEEEEEecCcceeEEEC
Confidence 33345555667899999964
No 116
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=33.90 E-value=2.7e+02 Score=25.30 Aligned_cols=244 Identities=10% Similarity=0.053 Sum_probs=112.9
Q ss_pred CCCCEEEEeeCCCc--eEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc---CCeeEEEEcCCC
Q 013152 17 PFRPVLLISAGASH--SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG---ADHTTAYSESCM 91 (448)
Q Consensus 17 ~~~~i~~i~~G~~~--~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G---~~~~~~l~~~~g 91 (448)
....|..++..... .+.-..||.|..|-...... .......+... ...|..++.. ....+.-..+ |
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d-g 136 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSNH-SSSVKTVKFNAKQDNVLASGGNN-G 136 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCCS-SSCCCEEEECSSSTTBEEEECSS-S
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccCC-ccceEEEEEcCCCCCEEEEEcCC-C
Confidence 45567777764433 33334788999995432100 00011111111 1245555554 3344444456 9
Q ss_pred EEEEEeCCCCCCcCCCCCCCcccceeec--ccCCCCEEEEEecCc---eEEEEEcCCcEEEEECCCCCccCCCCCCCccc
Q 013152 92 QVYSWGWGDFGRLGHGNSSDLFTPLPIK--ALHSLRVKQIACGDS---HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLV 166 (448)
Q Consensus 92 ~v~~wG~n~~g~lG~g~~~~~~~p~~v~--~l~~~~i~~I~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~ 166 (448)
.|+.|-........ ....+..+. ......|..++.... ..+.-..+|.|+.|-......
T Consensus 137 ~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------- 200 (416)
T 2pm9_A 137 EIFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE----------- 200 (416)
T ss_dssp CEEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-----------
T ss_pred eEEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-----------
Confidence 99999654322100 000111110 011235666665433 344446789999996543110
Q ss_pred ceeeeccc-----CccEEEEEeCCC---eEEEEecCC---cEEEeeCCCCCCCCCCCCCCccceeeeeeec-cCCCeEEE
Q 013152 167 PQKLQAFE-----GVSIKMVAAGAE---HSVAVAEDG---ELYGWGWGRYGNLGLGDRNDRLIPEKVATVD-LQREKMVM 234 (448)
Q Consensus 167 p~~v~~~~-----~~~i~~ia~G~~---~~~~lt~~G---~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~-~~~~~i~~ 234 (448)
...+.... ...|..++...+ ..+.-..+| .|+.|-.....+. . ..+. .....|..
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-----------~--~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-----------L--QTLNQGHQKGILS 267 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-----------S--BCCCSCCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-----------c--EEeecCccCceeE
Confidence 11111110 335666666543 344445566 8888864332111 0 0111 11234555
Q ss_pred EEe---cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCC---CeeEEEeCCCcEEEeec
Q 013152 235 VAC---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGW---RHTMAVTSDGKLYGWGW 308 (448)
Q Consensus 235 i~~---G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~---~h~~~lt~~G~vy~wG~ 308 (448)
++. .....+.-..+|.|+.|-...... ...+.. ....|..++... ...+.-..||.|..|-.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----------LSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCE-----------EEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----------ceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 554 345566667789999995432111 111111 112244444433 33344456788888876
Q ss_pred CC
Q 013152 309 NK 310 (448)
Q Consensus 309 n~ 310 (448)
..
T Consensus 336 ~~ 337 (416)
T 2pm9_A 336 QN 337 (416)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 117
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=32.99 E-value=2.7e+02 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=17.1
Q ss_pred EEEEcCC-CeeEEEeCCCcEEEeecCC
Q 013152 285 SQISGGW-RHTMAVTSDGKLYGWGWNK 310 (448)
Q Consensus 285 ~~I~~G~-~h~~~lt~~G~vy~wG~n~ 310 (448)
..|..+. -+.++++.+|++|+-....
T Consensus 166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 166 DELTIGIQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred EEEEcCCCccceEEcCCCCEEEEECCC
Confidence 3444443 3678889999999866543
No 118
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=32.32 E-value=2.9e+02 Score=25.19 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=111.1
Q ss_pred EEecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC-----CCeEEEEecCCcEEEeeCC
Q 013152 129 IACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG-----AEHSVAVAEDGELYGWGWG 203 (448)
Q Consensus 129 I~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~~~~~lt~~G~vy~wG~n 203 (448)
++...++.+++|+.|++|..-...-...+..... ......+...++++|+.+..- ....+++|++|.+.-.-..
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 4567788999999999999976553333321111 111122222245667765433 2357888999988766543
Q ss_pred CCCCCCCCCCCCccceeeeeeeccCCCeEEE--EEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccc-c
Q 013152 204 RYGNLGLGDRNDRLIPEKVATVDLQREKMVM--VACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL-R 280 (448)
Q Consensus 204 ~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~--i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-~ 280 (448)
++-.... ........+.. +..++. +..+..+.++++++|+++.+-.++--.+|.... ..+...+ .
T Consensus 125 e~~~~~r------~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i~L~~ 192 (323)
T 1wp5_A 125 HYKAQRY------SKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGMNLKE 192 (323)
T ss_dssp GGCCSCC------SSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECCCCCT
T ss_pred Hhhhccc------cCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEEEeCC
Confidence 3321110 00011111111 233433 234677889999999999887665444443211 1111112 2
Q ss_pred CCcEEEEEc--CCC-eeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCC-CCcEEE--EEcCCCeeEEEECCCC
Q 013152 281 ESFISQISG--GWR-HTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPL-DQKVVQ--ISCGWRHTLAVTERQN 354 (448)
Q Consensus 281 ~~~i~~I~~--G~~-h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~--i~~G~~h~~al~~~g~ 354 (448)
+..|+.+.. -.. ..+++|++|...-.-...+-.-+.+..- ...+.. +.. +..+.. +..+....++++++|.
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~--~~~~~~~l~~~~~v~~~~~i~~it~~g~ 269 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRE--LKANPHRISGFVVAQDSDTIYLQTEKSF 269 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCC--CSSSCCCEEEEEEECTTCEEEEEETTSC
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeee--cCCCCceEEEEEEeCCCCeEEEEeCCCe
Confidence 334554432 122 5666777776444333332111111100 000100 111 223442 2345677889999999
Q ss_pred EEEEeCCCCCCCCC
Q 013152 355 VFSWGRGTNGQLGH 368 (448)
Q Consensus 355 v~~wG~n~~gqLG~ 368 (448)
+.-.--++--.+|.
T Consensus 270 ~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 270 IETIKVGDIRFSDR 283 (323)
T ss_dssp EEEEEGGGSCBCCS
T ss_pred EEEEEhhhcCccCc
Confidence 88776555444443
No 119
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.73 E-value=3.1e+02 Score=25.00 Aligned_cols=225 Identities=8% Similarity=-0.014 Sum_probs=111.7
Q ss_pred EEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEec-----CceEEEEEcCCcEEEEEC
Q 013152 76 VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACG-----DSHCLAVTVEGEVQSWGR 150 (448)
Q Consensus 76 v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G-----~~h~~~lt~~G~vy~wG~ 150 (448)
++...++.+++|+. |++|..-..+--..+..... ......+....+.+|+.+..- ..+.+++|++|.+.-.--
T Consensus 46 ~~~t~d~ll~fT~~-Gr~~~~~~~elp~~~r~a~G-~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNK-GNYLYCPVHELPDIRWKDLG-QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETT-SEEEEEEGGGSCBCCTTSCC-EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECC-CEEEEEEHHHCcCCCCCCCC-cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 45567788888888 99999876543332221111 101111222345677776443 235888999998887754
Q ss_pred CCCCccCCCCCCCcccceeeecccCccEEE--EEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccC
Q 013152 151 NQNGQLGLGTTEDSLVPQKLQAFEGVSIKM--VAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQ 228 (448)
Q Consensus 151 n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~ 228 (448)
..+-..... .- -..+..-++..++. +..+.++.+++|++|+++-+-.++.-.+|... ...+...+. .
T Consensus 124 ~e~~~~~r~---~G--~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a-----~GV~~i~L~-~ 192 (323)
T 1wp5_A 124 KHYKAQRYS---KP--LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRA-----AGVKGMNLK-E 192 (323)
T ss_dssp GGGCCSCCS---SC--EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSC-----CCEECCCCC-T
T ss_pred HHhhhcccc---Cc--eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCC-----cCEEEEEeC-C
Confidence 332211100 00 00011112233433 33467889999999999988766544443311 111211111 1
Q ss_pred CCeEEEEEec--Cc-eEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEE--EEcCCCeeEEEeCCCcE
Q 013152 229 REKMVMVACG--WR-HTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQ--ISGGWRHTMAVTSDGKL 303 (448)
Q Consensus 229 ~~~i~~i~~G--~~-hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~--I~~G~~h~~~lt~~G~v 303 (448)
+..|+.+..- .. ..+.++++|.....-..++-.-+.+.. -...+...+. .+..+.. +..+.+..++++++|++
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g~~ 270 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCCeE
Confidence 3455555321 22 567777777654443333322221110 0111111110 1112332 23456788899999998
Q ss_pred EEeecCCCCccc
Q 013152 304 YGWGWNKFGQVG 315 (448)
Q Consensus 304 y~wG~n~~GqLG 315 (448)
.-.-.++.-..|
T Consensus 271 ir~~~~~i~~~~ 282 (323)
T 1wp5_A 271 ETIKVGDIRFSD 282 (323)
T ss_dssp EEEEGGGSCBCC
T ss_pred EEEEhhhcCccC
Confidence 877655544443
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=30.64 E-value=2.7e+02 Score=24.19 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=63.2
Q ss_pred cEEEEEccC--CeeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeecc--cCCCCEEEEEec----CceEEEEEcCC
Q 013152 72 EIVSVTCGA--DHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKA--LHSLRVKQIACG----DSHCLAVTVEG 143 (448)
Q Consensus 72 ~i~~v~~G~--~~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~--l~~~~i~~I~~G----~~h~~~lt~~G 143 (448)
.|..++... .+.+.-..+ |.|..|-...... ....+.. .....|..++.. ....+....||
T Consensus 13 ~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSD-QHIKVFKLDKDTS----------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEEEEEECSSSSEEEEEETT-SEEEEEEECSSSC----------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceeEEEEcCCCCEEEEeeCC-CeEEEEECCCCCC----------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 466666543 344444566 9999996432110 1111111 123468888765 34556667899
Q ss_pred cEEEEECCCCCccCCCCCCCcccceeeecc--cCccEEEEEeCC----CeEEEEecCCcEEEeeCCC
Q 013152 144 EVQSWGRNQNGQLGLGTTEDSLVPQKLQAF--EGVSIKMVAAGA----EHSVAVAEDGELYGWGWGR 204 (448)
Q Consensus 144 ~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~ia~G~----~~~~~lt~~G~vy~wG~n~ 204 (448)
.|..|-......... ......+..+ ....|..++... ...+.-..+|.|+.|-...
T Consensus 82 ~v~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS-----GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp CEEEEEECTTSCTTS-----SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred eEEEEecCCCccccc-----ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999997644221100 0011112222 234677777664 3566667899999996543
No 121
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.99 E-value=3.2e+02 Score=24.90 Aligned_cols=117 Identities=15% Similarity=0.019 Sum_probs=52.2
Q ss_pred cEEEEEeC---CCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec--CceEEEEEcCCCE
Q 013152 177 SIKMVAAG---AEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG--WRHTISVSSSGRL 251 (448)
Q Consensus 177 ~i~~ia~G---~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G--~~hs~~l~~~G~v 251 (448)
.|..++.. ....+.-..||.|..|-....++ .+..+......|..++.. ..+.+.-..||.|
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------CCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 46666552 34445556799999996432111 111111112234444433 2344444578888
Q ss_pred EEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcCCCeeEEEeCCCcEEEeecC
Q 013152 252 YSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGGWRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 252 y~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~~~lt~~G~vy~wG~n 309 (448)
..|-.....++..-........ .......-..++......++-..+|.|+.|-..
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRND---NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSC---CSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred EEEECCCCcEEEEecccccccc---cccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 8886543222110000000000 000001122233344555556678899998643
No 122
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=29.07 E-value=4.7e+02 Score=26.91 Aligned_cols=124 Identities=12% Similarity=0.094 Sum_probs=69.3
Q ss_pred EecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEcC--CCeeEEEeCCCcEEEeecCCCCc
Q 013152 236 ACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISGG--WRHTMAVTSDGKLYGWGWNKFGQ 313 (448)
Q Consensus 236 ~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n~~Gq 313 (448)
+...++.+++|+.|++|..-..+--. +...-......+..-.+.+|+.+... ..+.++.|++|.+.-.=...+-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~- 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV- 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC-
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc-
Confidence 44456678999999999876433211 11111112222223345678877665 3456777889988766543321
Q ss_pred ccCCCCCCccCceEeecCCCCcEEEE--E-cCCCeeEEEECCCCEEEEeCCCCCCCCC
Q 013152 314 VGVGDNVDHCSPVQVKFPLDQKVVQI--S-CGWRHTLAVTERQNVFSWGRGTNGQLGH 368 (448)
Q Consensus 314 LG~g~~~~~~~p~~v~~~~~~~v~~i--~-~G~~h~~al~~~g~v~~wG~n~~gqLG~ 368 (448)
......-..+.+..+..++.+ . .+..+.++++++|.+.-+-.++--.+|.
T Consensus 587 -----~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 587 -----ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp -----CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred -----ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 111111223333333343332 2 3677889999999999998766555544
No 123
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=26.92 E-value=3.4e+02 Score=24.19 Aligned_cols=269 Identities=9% Similarity=0.013 Sum_probs=122.4
Q ss_pred CCCEEEEeeCCCceE--EEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CCeeEEEEcCCCEE
Q 013152 18 FRPVLLISAGASHSV--ALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--ADHTTAYSESCMQV 93 (448)
Q Consensus 18 ~~~i~~i~~G~~~~~--~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~~~~~l~~~~g~v 93 (448)
...|..++....... .-..||.|..|-..... ....+... ...|..++.. ..+.+.-..+ +.+
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-~~v 121 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------KVHAIPLR-SSWVMTCAYAPSGNYVACGGLD-NIC 121 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------EEEEEECS-SSCEEEEEECTTSSEEEEEETT-CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------cceEeecC-CccEEEEEECCCCCEEEEEeCC-CeE
Confidence 345666665544333 33478889999533211 11111111 1234444433 3334444556 888
Q ss_pred EEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEe-cCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeec
Q 013152 94 YSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIAC-GDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQA 172 (448)
Q Consensus 94 ~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~-G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~ 172 (448)
..|-...... .......+.. ....|..+.. .....+.-..||.|..|-.... ..+..
T Consensus 122 ~iw~~~~~~~-------~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~--------------~~~~~ 179 (340)
T 1got_B 122 SIYNLKTREG-------NVRVSRELAG-HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG--------------QQTTT 179 (340)
T ss_dssp EEEETTTCSB-------SCEEEEEEEC-CSSCEEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred EEEECccCCC-------cceeEEEecC-CCccEEEEEECCCCcEEEEECCCcEEEEECCCC--------------cEEEE
Confidence 8886432110 0000111111 1123444332 2334556667889999965331 11111
Q ss_pred cc--CccEEEEEeCCCe--EEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecC--ceEEEEE
Q 013152 173 FE--GVSIKMVAAGAEH--SVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGW--RHTISVS 246 (448)
Q Consensus 173 ~~--~~~i~~ia~G~~~--~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~--~hs~~l~ 246 (448)
+. ...|..++...+. .+.-..||.|..|-.... ..+..+......|..++... ...+.-.
T Consensus 180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--------------MCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------SEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------------eeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 11 2246666655443 333456889999953221 11122222233565555432 3444456
Q ss_pred cCCCEEEEcCCCCCCCCCCCCCCceeeeeeccc-cCCcEEEEEcCC--CeeEEEeCCCcEEEeecCCCCcccCCCCCCcc
Q 013152 247 SSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL-RESFISQISGGW--RHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHC 323 (448)
Q Consensus 247 ~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~I~~G~--~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~ 323 (448)
.+|.|..|-......+ ...... ....|..++... ...++-..+|.|+.|-.....
T Consensus 246 ~d~~v~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~----------- 303 (340)
T 1got_B 246 DDATCRLFDLRADQEL-----------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD----------- 303 (340)
T ss_dssp TTSCEEEEETTTTEEE-----------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------
T ss_pred CCCcEEEEECCCCcEE-----------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc-----------
Confidence 7888888854321111 011100 011355555433 334444678888888643321
Q ss_pred CceEeecCCCCcEEEEEcCCC--eeEEEECCCCEEEE
Q 013152 324 SPVQVKFPLDQKVVQISCGWR--HTLAVTERQNVFSW 358 (448)
Q Consensus 324 ~p~~v~~~~~~~v~~i~~G~~--h~~al~~~g~v~~w 358 (448)
+...-......|..++...+ ..+.-..||.|..|
T Consensus 304 -~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 304 -RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred -EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 11111112345655554433 23333467777777
No 124
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=26.73 E-value=3.7e+02 Score=24.58 Aligned_cols=239 Identities=12% Similarity=0.125 Sum_probs=104.5
Q ss_pred EEEEEccCC--eeEEEEcCCCEEEEEeCCCCCCcCCCCCCCcccceeeccc--CCCCEEEEEec--CceEEEEEcCCcEE
Q 013152 73 IVSVTCGAD--HTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKAL--HSLRVKQIACG--DSHCLAVTVEGEVQ 146 (448)
Q Consensus 73 i~~v~~G~~--~~~~l~~~~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l--~~~~i~~I~~G--~~h~~~lt~~G~vy 146 (448)
|..++...+ +.+.-..| +.|..|-.... ..+..+ ....|..++.. ..+.+.-..||.|.
T Consensus 126 v~~v~~s~dg~~l~s~~~d-~~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~ 190 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAED-RLIRIWDIENR--------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190 (393)
T ss_dssp EEEEEECTTSSEEEEEETT-SCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEcCC-CeEEEEECCCC--------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE
Confidence 566665433 33334456 88888853221 111111 12356666654 34555666889999
Q ss_pred EEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCC---CeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeee
Q 013152 147 SWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGA---EHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVA 223 (448)
Q Consensus 147 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~ 223 (448)
.|-... +++ ...+.. ...+..++... ...+.-..||.|..|-... +++- ........
T Consensus 191 iwd~~~-~~~----------~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~------~~~~~~~~ 250 (393)
T 1erj_A 191 IWDLRT-GQC----------SLTLSI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLV------ERLDSENE 250 (393)
T ss_dssp EEETTT-TEE----------EEEEEC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEE------EEEC----
T ss_pred EEECCC-Cee----------EEEEEc--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEE------Eeeccccc
Confidence 995432 110 011111 12355555432 3444556788999995322 1100 00000000
Q ss_pred eeccCCCeEEEEEecC--ceEEEEEcCCCEEEEcCCCCCCCCCCCCCCcee-eeeeccccCCcEEEEEcCCC--eeEEEe
Q 013152 224 TVDLQREKMVMVACGW--RHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLV-PCQLEALRESFISQISGGWR--HTMAVT 298 (448)
Q Consensus 224 ~~~~~~~~i~~i~~G~--~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~-p~~v~~~~~~~i~~I~~G~~--h~~~lt 298 (448)
........|..++... .+.+.-..+|.|..|-................. ...+.. ....|..++.... +.+.-.
T Consensus 251 ~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEe
Confidence 0011123455555432 344445678888888643322111000000000 000100 1123555555433 334445
Q ss_pred CCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCC-------CeeE-EEECCCCEEEEe
Q 013152 299 SDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGW-------RHTL-AVTERQNVFSWG 359 (448)
Q Consensus 299 ~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~-------~h~~-al~~~g~v~~wG 359 (448)
.||.|+.|-.... .+...-......|..++... ...+ .-..||.|..|-
T Consensus 330 ~D~~v~iwd~~~~------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 330 KDRGVLFWDKKSG------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp TTSEEEEEETTTC------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCeEEEEECCCC------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 7888999964321 12221111234566666432 1222 234788888885
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=26.07 E-value=3.6e+02 Score=24.25 Aligned_cols=230 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccCCeeEEEEcCCCEEEEEeCCCCCCcCCCCC
Q 013152 30 HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNS 109 (448)
Q Consensus 30 ~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~~~~~~l~~~~g~v~~wG~n~~g~lG~g~~ 109 (448)
+.+++..+|+.........+.+-.=+......-..+.......-..++....+.++...+++.|+.| +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~-----------d~ 103 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVI-----------DT 103 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ET
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEE-----------EC
Q ss_pred CCcccceeecccCCCCEEEEEecCceE-EEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCCeE
Q 013152 110 SDLFTPLPIKALHSLRVKQIACGDSHC-LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAEHS 188 (448)
Q Consensus 110 ~~~~~p~~v~~l~~~~i~~I~~G~~h~-~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~~~ 188 (448)
........+..-....-..++....+. +.-..++.|+.| +.........+..-....-..+.-...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~-----------d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVI-----------NTVTKAVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEE-----------ETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEE-----------ECCCCcEEEEEecCCCcceEEECCCCCEE
Q ss_pred -EEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCc--eEEEEEcCCCEEEEcCC--CCCCCC
Q 013152 189 -VAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWR--HTISVSSSGRLYSYGWS--KYGQLG 263 (448)
Q Consensus 189 -~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~--hs~~l~~~G~vy~~G~n--~~gqlg 263 (448)
+.-..++.|+.| +....++........ ..+++..+|+....+.. ..+.+-
T Consensus 173 ~~~~~~~~~v~~~-------------------------d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 173 YVANFDSMSISVI-------------------------DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEETTTTEEEEE-------------------------ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEeCCCCEEEEE-------------------------ECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Q ss_pred CCCCCCceeeeeeccccCCcEEEEEcCCCee-EEEeCCCcEEEe
Q 013152 264 HGDFKDHLVPCQLEALRESFISQISGGWRHT-MAVTSDGKLYGW 306 (448)
Q Consensus 264 ~~~~~~~~~p~~v~~~~~~~i~~I~~G~~h~-~~lt~~G~vy~w 306 (448)
.-+.........+..-....-..++.-..+. +....++.|+.|
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 228 MIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
No 126
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=24.66 E-value=5.9e+02 Score=26.21 Aligned_cols=123 Identities=10% Similarity=0.080 Sum_probs=66.7
Q ss_pred EecCceEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCC
Q 013152 130 ACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGN 207 (448)
Q Consensus 130 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gq 207 (448)
+...++.+++|+.|++|..-...-... ...-......+..-++++|+.+... ..+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~~---~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCCC---C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeecccc---cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 344567899999999998865442221 1111112222222346778887665 34567788899887664333210
Q ss_pred CCCCCCCCccceeeeeeeccCCCeEEEE---EecCceEEEEEcCCCEEEEcCCCCCCCC
Q 013152 208 LGLGDRNDRLIPEKVATVDLQREKMVMV---ACGWRHTISVSSSGRLYSYGWSKYGQLG 263 (448)
Q Consensus 208 lg~~~~~~~~~p~~v~~~~~~~~~i~~i---~~G~~hs~~l~~~G~vy~~G~n~~gqlg 263 (448)
. .........+.. +..++.+ ..+..+.++++++|++..|-.++--.+|
T Consensus 588 ~-------~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 588 R-------NRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C-------STTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c-------CccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 0 011111111111 2233322 2367788999999999988776544443
No 127
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=24.55 E-value=4.4e+02 Score=24.73 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=74.4
Q ss_pred EEEEEecCceEEEEEcCCc-EEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC---------CCeEEEEecCC
Q 013152 126 VKQIACGDSHCLAVTVEGE-VQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG---------AEHSVAVAEDG 195 (448)
Q Consensus 126 i~~I~~G~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---------~~~~~~lt~~G 195 (448)
+..|..|...-++++.||+ +|...... ...-.+.. ...-..+..-....+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~-~r~~~G~~--~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVF-SRIARGER--TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEE-EETTEEEE--EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccc-cccccCCC--CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 4455555544488998887 66643100 00000000 000111222223345556554 35678999888
Q ss_pred c-EEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEecCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeee
Q 013152 196 E-LYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACGWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPC 274 (448)
Q Consensus 196 ~-vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 274 (448)
+ +|+......+.+..-+.... +.+..+...+ ...-...|..-.++++.+|++........+.+-. .. .
T Consensus 149 k~lyVan~~~~~~VsVID~~t~---~vv~tI~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~-~- 217 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGK---AFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----TH-T- 217 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTT---EEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EE-C-
T ss_pred CEEEEEEcCCCCeEEEEECCCC---cEEEEEECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----ee-c-
Confidence 6 67764221111111111111 1111111111 1111234555566888999988877655444411 00 0
Q ss_pred eeccccCCcEE---EEEcCCCeeEEEeCCCcEEEee
Q 013152 275 QLEALRESFIS---QISGGWRHTMAVTSDGKLYGWG 307 (448)
Q Consensus 275 ~v~~~~~~~i~---~I~~G~~h~~~lt~~G~vy~wG 307 (448)
.+.......+. .......+.++++.+|+||+.-
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred ceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 11111111110 1222344667788889999874
No 128
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=24.55 E-value=3.5e+02 Score=23.55 Aligned_cols=93 Identities=10% Similarity=0.144 Sum_probs=46.0
Q ss_pred EEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeCCC--eEEEEecCCcEEEeeCCCCCCCCCCCCC
Q 013152 137 LAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAGAE--HSVAVAEDGELYGWGWGRYGNLGLGDRN 214 (448)
Q Consensus 137 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~ 214 (448)
+.-..|+.|..|-..... ....+.. ....|..++...+ ..+.-..||.|..|-....
T Consensus 189 ~s~~~d~~i~i~d~~~~~-----------~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--------- 247 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCK-----------LKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--------- 247 (340)
T ss_dssp EEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---------
T ss_pred EEEcCCCEEEEEECCCCc-----------eeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---------
Confidence 344578889988643311 0111111 1235666665443 3334457889999964321
Q ss_pred CccceeeeeeeccCCCeEEEEEec-CceEEEEEcCCCEEEEcC
Q 013152 215 DRLIPEKVATVDLQREKMVMVACG-WRHTISVSSSGRLYSYGW 256 (448)
Q Consensus 215 ~~~~p~~v~~~~~~~~~i~~i~~G-~~hs~~l~~~G~vy~~G~ 256 (448)
..+..+.. ...|..++.. ..+.++...++.|+.|-.
T Consensus 248 -----~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 248 -----KHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp -----EEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred -----ceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEEC
Confidence 11212221 2234444332 234555667888888854
No 129
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=24.08 E-value=3.5e+02 Score=23.37 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=12.0
Q ss_pred eeEEEeCCCcEEEee
Q 013152 293 HTMAVTSDGKLYGWG 307 (448)
Q Consensus 293 h~~~lt~~G~vy~wG 307 (448)
..++++.+|++|+-.
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 467888889988866
No 130
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=24.03 E-value=3.2e+02 Score=22.97 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred eEEEEEcCCcEEEEECCCCCccCCCCCCCcccceeeecccCccEEEEEeC--CCeEEEEecCCcEEEeeCCCCCCCCCCC
Q 013152 135 HCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEGVSIKMVAAG--AEHSVAVAEDGELYGWGWGRYGNLGLGD 212 (448)
Q Consensus 135 h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~~~~~lt~~G~vy~wG~n~~gqlg~~~ 212 (448)
+.++++.+|++|..+....+.+ ..+..-..........+ .-+.++++.+|++|+...+.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~-------- 87 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRV-----------VKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNN-------- 87 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEE-----------EEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTT--------
T ss_pred cceEECCCCCEEEEccCCCCcE-----------EEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCC--------
Q ss_pred CCCccceeeeeeeccCCCeEEEEEe---cCceEEEEEcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccccCCcEEEEEc
Q 013152 213 RNDRLIPEKVATVDLQREKMVMVAC---GWRHTISVSSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEALRESFISQISG 289 (448)
Q Consensus 213 ~~~~~~p~~v~~~~~~~~~i~~i~~---G~~hs~~l~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~I~~ 289 (448)
.+..++.....+..+.. ..-+.++++.+|++|..........-...............+....-..+..
T Consensus 88 --------~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 88 --------RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp --------EEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred --------EEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Q ss_pred CCCeeEEEeCCCcEEEeecCCCCcccCCCCCCccCceEeecCCCCcEEEEEcCCCeeEEEEC--CCCEEEE
Q 013152 290 GWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDHCSPVQVKFPLDQKVVQISCGWRHTLAVTE--RQNVFSW 358 (448)
Q Consensus 290 G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~h~~al~~--~g~v~~w 358 (448)
-..-.++-..++.|+.|-... .............+..|+......+.+.. ++.|+.|
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAES------------NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTT------------CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCC------------CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEE
No 131
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=23.45 E-value=3.7e+02 Score=23.45 Aligned_cols=256 Identities=10% Similarity=-0.015 Sum_probs=123.0
Q ss_pred CCCCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEcc--CC-eeEEEEcCC
Q 013152 16 APFRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCG--AD-HTTAYSESC 90 (448)
Q Consensus 16 ~~~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G--~~-~~~~l~~~~ 90 (448)
+....|..++.... ..++-..||.|++|-..... ....+..+... ...|..++.. .. +.+.-..+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d- 78 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLRY-KHPLLCCNFIDNTDLQIYVGTVQ- 78 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEEC-SSCEEEEEEEESSSEEEEEEETT-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeeec-CCceEEEEECCCCCcEEEEEcCC-
Confidence 44566777776533 34444578999999643221 00011222111 2346655543 33 45555566
Q ss_pred CEEEEEeCCCCCCcCCCCCCCcccceeecc-cCCCCEEEEEec-CceEEEEEcCCcEEEEECCCCCccCCCCCCCcccce
Q 013152 91 MQVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHSLRVKQIACG-DSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQ 168 (448)
Q Consensus 91 g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~-l~~~~i~~I~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 168 (448)
|.|+.|-....++ ...+.. .....|..++.. ....+....||.|+.|-...... ........+.
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~ 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNS 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCS
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCee
Confidence 9999995411111 112221 023356666554 56667778899999995321000 0000000000
Q ss_pred eeecccCccEEEEEeCCCeEEEEecCCcEEEeeCCCCCCCCCCCCCCccceeeeeeeccCCCeEEEEEec---CceEEEE
Q 013152 169 KLQAFEGVSIKMVAAGAEHSVAVAEDGELYGWGWGRYGNLGLGDRNDRLIPEKVATVDLQREKMVMVACG---WRHTISV 245 (448)
Q Consensus 169 ~v~~~~~~~i~~ia~G~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~~~i~~i~~G---~~hs~~l 245 (448)
.... ....|..++...+..++-+.+|.|+.|-....+.. ...... ......+..++.. ....++-
T Consensus 145 ~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEE--SGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp SSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEE--CSCSSCEEEEEECSGGGCEEEEE
T ss_pred eEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeee--cCCCCceeEEEECCCCCCEEEEE
Confidence 0001 12367788877777777788999999975431110 001111 1112345555553 3455566
Q ss_pred EcCCCEEEEcCCCCCCCCCCCCCCceeeeeeccc-----cCCcEEEEEcC--CCeeEEEeCCCcEEEeecC
Q 013152 246 SSSGRLYSYGWSKYGQLGHGDFKDHLVPCQLEAL-----RESFISQISGG--WRHTMAVTSDGKLYGWGWN 309 (448)
Q Consensus 246 ~~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~-----~~~~i~~I~~G--~~h~~~lt~~G~vy~wG~n 309 (448)
..+|.++.|-....+.--.. ............ ....|..++.. ....+.-..+|.|+.|-..
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNS--SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTC--TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ecCCcEEEEEEcCCCccccc--ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 77888888865443100000 000000000000 01136666543 3344555678899998644
No 132
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=22.49 E-value=3.8e+02 Score=23.15 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=64.6
Q ss_pred CCCEEEEeeCCC--ceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCC--CCCcEEEEEcc----CCeeEEEEcC
Q 013152 18 FRPVLLISAGAS--HSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSAL--DGHEIVSVTCG----ADHTTAYSES 89 (448)
Q Consensus 18 ~~~i~~i~~G~~--~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~--~~~~i~~v~~G----~~~~~~l~~~ 89 (448)
...|..++.... ..+.-..||.|.+|-..... .....+..+ ....|..++.. ....+....|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 456777776433 33444578999999643211 011111111 12357777764 3445555666
Q ss_pred CCEEEEEeCCCCCCcCCCCCCCcccceeecccCCCCEEEEEecC----ceEEEEEcCCcEEEEECCC
Q 013152 90 CMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGD----SHCLAVTVEGEVQSWGRNQ 152 (448)
Q Consensus 90 ~g~v~~wG~n~~g~lG~g~~~~~~~p~~v~~l~~~~i~~I~~G~----~h~~~lt~~G~vy~wG~n~ 152 (448)
|.|..|-......... .....+..........|..++... ...+....||.|+.|-...
T Consensus 81 -g~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 81 -KTVKLWEEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp -SCEEEEEECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred -CeEEEEecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 9999997543221110 001111111112234688887764 3566678899999997544
No 133
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Probab=20.43 E-value=2.9e+02 Score=22.05 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=35.3
Q ss_pred ccCCCCCCCEEEEeeCC-CceEEEEcCCeEEEEeCCCCCccCCCCCCCccCCeeecCCCCCcEEEEEccC-CeeEEEEcC
Q 013152 12 STTAAPFRPVLLISAGA-SHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGA-DHTTAYSES 89 (448)
Q Consensus 12 ~~~~~~~~~i~~i~~G~-~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~P~~v~~~~~~~i~~v~~G~-~~~~~l~~~ 89 (448)
..+.....+..++-|-. .+.+-|..||+|-.-... .+...-..+..... .++.|..-. ...+++.+.
T Consensus 11 ~~~~~~~~r~~rLY~r~~g~~LqI~~dG~V~Gt~~~----------~~~~s~l~i~sv~~-G~V~I~gv~s~~YLcMn~~ 79 (146)
T 1bfg_A 11 AFPPGHFKDPKRLYCKNGGFFLRIHPDGRVDGVREK----------SDPHIKLQLQAEER-GVVSIKGVSANRYLAMKED 79 (146)
T ss_dssp --------CCEEEEETTTTEEEEECTTSCEEEECCT----------TCGGGCEEEEECST-TEEEEEETTTTEEEEECTT
T ss_pred CCCCCCcCccEEEEEcCCCEEEEECCCCeEEeecCC----------CCCceEEEEEeccC-CEEEEEEcccCcEEEEcCC
Confidence 33345677888888876 677888899998633221 11122222222221 244444333 345555566
Q ss_pred CCEEEE
Q 013152 90 CMQVYS 95 (448)
Q Consensus 90 ~g~v~~ 95 (448)
|+||.
T Consensus 80 -G~Lyg 84 (146)
T 1bfg_A 80 -GRLLA 84 (146)
T ss_dssp -SCEEE
T ss_pred -CCEec
Confidence 99996
Done!