BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013153
         (448 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 33.5 bits (75), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 136 WKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDN 195
           W+P  C + ++  +     L +KH+AF+GDS  R    S       V + N  +++ E N
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSF------VKIINPQFKE-EGN 116

Query: 196 KFRRWHFD--AHNVTVSVYWSP 215
           K     F+  A +V V   W P
Sbjct: 117 KHENIPFEDKAASVKVDFLWHP 138


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 33.5 bits (75), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 136 WKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSV------PNLVY 189
           W+P  C L ++        LR K +AFVGDS  R    S + M++           N+ +
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHENIPF 123

Query: 190 RDGEDNKFRRWHFDAHN 206
            DG+      W+ + +N
Sbjct: 124 VDGDSTVNFLWYAEVNN 140


>sp|Q96PB1|CASD1_HUMAN CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1
          Length = 797

 Score = 33.1 bits (74), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 136 WKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDN 195
           W+P  C + ++  +   + L +KH+AF+GDS  R    S       V + N  +++ E N
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSF------VKIINPQFKE-EGN 116

Query: 196 KFRRWHFDAHNVTVSV--YWSP 215
           K     F+    +V V   W P
Sbjct: 117 KHENIPFEDKTASVKVDFLWHP 138


>sp|Q4J9B0|PRIS_SULAC Probable DNA primase small subunit OS=Sulfolobus acidocaldarius
          (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
          NCIMB 11770) GN=priA PE=3 SV=1
          Length = 322

 Score = 33.1 bits (74), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 3  KDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSL 54
          +++ Y P +    +   TF +V  +  F L   PLHLYF +A  Q+P  K +
Sbjct: 36 REFAYQPFNSDTYVRHLTFSSVDELRSFILSNVPLHLYFSAARYQIPSAKEM 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,152,124
Number of Sequences: 539616
Number of extensions: 7703074
Number of successful extensions: 24290
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24138
Number of HSP's gapped (non-prelim): 102
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)