Query 013153
Match_columns 448
No_of_seqs 206 out of 806
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h08_A Putative hydrolase; GDS 96.8 0.013 4.5E-07 52.5 12.5 52 247-326 73-124 (200)
2 4hf7_A Putative acylhydrolase; 65.4 2.1 7.1E-05 38.5 1.4 15 156-170 25-39 (209)
3 3hp4_A GDSL-esterase; psychrot 63.9 2.1 7.3E-05 36.9 1.1 15 156-170 1-15 (185)
4 3rjt_A Lipolytic protein G-D-S 55.5 4.1 0.00014 35.6 1.5 15 156-170 7-21 (216)
5 1ivn_A Thioesterase I; hydrola 49.7 4.8 0.00016 35.0 0.9 14 157-170 1-14 (190)
6 3mil_A Isoamyl acetate-hydroly 47.7 5 0.00017 35.8 0.7 55 247-325 71-125 (240)
7 1yzf_A Lipase/acylhydrolase; s 46.4 5.3 0.00018 34.2 0.7 51 247-325 66-116 (195)
8 2q0q_A ARYL esterase; SGNH hyd 42.2 7 0.00024 34.4 0.8 13 158-170 3-15 (216)
9 2hsj_A Putative platelet activ 41.2 9.8 0.00034 33.4 1.6 32 290-325 105-136 (214)
10 1fxw_F Alpha2, platelet-activa 40.0 16 0.00055 32.9 2.9 23 149-171 29-53 (229)
11 3dc7_A Putative uncharacterize 38.4 11 0.00037 33.9 1.4 17 154-170 18-34 (232)
12 3dci_A Arylesterase; SGNH_hydr 38.2 8.7 0.0003 34.8 0.8 36 289-324 122-158 (232)
13 1vjg_A Putative lipase from th 37.2 8.4 0.00029 34.2 0.5 16 155-170 18-33 (218)
14 2k8j_X P7TM2; P7 polypeptide, 34.9 27 0.00091 22.5 2.4 18 16-33 5-22 (29)
15 1es9_A PAF-AH, platelet-activa 34.8 14 0.00048 33.2 1.6 50 248-325 93-142 (232)
16 3bzw_A Putative lipase; protei 33.9 15 0.0005 34.3 1.6 16 155-170 24-39 (274)
17 3p94_A GDSL-like lipase; serin 33.8 13 0.00044 32.2 1.2 31 289-325 96-126 (204)
18 2vpt_A Lipolytic enzyme; ester 30.6 12 0.00043 33.2 0.5 14 157-170 5-18 (215)
19 3grf_A Ornithine carbamoyltran 29.5 25 0.00086 34.9 2.5 27 154-181 158-184 (328)
20 1vcc_A DNA topoisomerase I; DN 29.5 8.7 0.0003 30.0 -0.6 15 158-172 55-70 (77)
21 4amu_A Ornithine carbamoyltran 27.6 28 0.00094 35.2 2.5 26 155-181 178-203 (365)
22 3tpf_A Otcase, ornithine carba 27.4 29 0.00099 34.1 2.5 25 155-181 143-168 (307)
23 3r7f_A Aspartate carbamoyltran 27.3 27 0.00093 34.3 2.3 27 155-181 145-171 (304)
24 2waa_A Acetyl esterase, xylan 26.6 20 0.00067 35.1 1.1 15 156-170 131-145 (347)
25 2w9x_A AXE2A, CJCE2B, putative 26.5 22 0.00075 35.0 1.5 28 289-320 266-293 (366)
26 2wao_A Endoglucanase E; plant 24.6 21 0.00072 34.6 0.9 15 156-170 121-135 (341)
27 3q98_A Transcarbamylase; rossm 24.0 38 0.0013 34.6 2.7 27 155-181 189-220 (399)
28 1pg5_A Aspartate carbamoyltran 23.9 39 0.0013 33.0 2.7 28 155-182 147-174 (299)
29 3csu_A Protein (aspartate carb 23.4 36 0.0012 33.5 2.4 28 155-182 152-179 (310)
30 1fll_X B-cell surface antigen 23.0 26 0.0009 21.8 0.8 10 415-424 7-16 (26)
31 3t6g_B Breast cancer anti-estr 22.6 4.4 0.00015 38.3 -4.2 14 157-170 146-159 (229)
32 2qru_A Uncharacterized protein 22.4 63 0.0022 29.5 3.7 30 150-179 83-117 (274)
33 3sds_A Ornithine carbamoyltran 22.2 37 0.0013 34.0 2.2 24 156-181 187-210 (353)
34 2yfk_A Aspartate/ornithine car 22.1 43 0.0015 34.3 2.7 28 155-182 186-218 (418)
35 4ekn_B Aspartate carbamoyltran 21.1 42 0.0014 32.9 2.3 27 155-181 149-175 (306)
36 4f2g_A Otcase 1, ornithine car 20.5 42 0.0014 33.0 2.2 25 155-181 152-176 (309)
37 4ep1_A Otcase, ornithine carba 20.2 43 0.0015 33.4 2.2 25 155-181 177-201 (340)
38 2o14_A Hypothetical protein YX 20.0 37 0.0013 33.7 1.7 16 155-170 160-175 (375)
No 1
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=96.82 E-value=0.013 Score=52.52 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCCcEEEEeccccccccceeccCCeeeccccCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCCC
Q 013153 247 DQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHF 326 (448)
Q Consensus 247 ~~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~Hf 326 (448)
..+|+|||+.|..=.. . ..+.|++.|+..++.+.+. ..+++++|.+..|...
T Consensus 73 ~~pd~Vvi~~G~ND~~--------------------~----~~~~~~~~l~~ii~~l~~~----~p~~~ii~~~~~P~~~ 124 (200)
T 4h08_A 73 TKFDVIHFNNGLHGFD--------------------Y----TEEEYDKSFPKLIKIIRKY----APKAKLIWANTTPVRT 124 (200)
T ss_dssp SCCSEEEECCCSSCTT--------------------S----CHHHHHHHHHHHHHHHHHH----CTTCEEEEECCCCCEE
T ss_pred CCCCeEEEEeeeCCCC--------------------C----CHHHHHHHHHHHHHHHhhh----CCCccEEEeccCCCcc
Confidence 5689999998864110 0 1356888888888776443 3457889998888653
No 2
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=65.42 E-value=2.1 Score=38.50 Aligned_cols=15 Identities=20% Similarity=0.694 Sum_probs=13.0
Q ss_pred cCCcEEEEecchhHH
Q 013153 156 RNKHLAFVGDSMARN 170 (448)
Q Consensus 156 RgKri~FVGDSl~RN 170 (448)
.+++|+|+|||++..
T Consensus 25 ~~~~Iv~~GDSit~g 39 (209)
T 4hf7_A 25 KEKRVVFMGNXITEG 39 (209)
T ss_dssp GGCCEEEEESHHHHH
T ss_pred CCCeEEEECcHHHhC
Confidence 467899999999974
No 3
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=63.91 E-value=2.1 Score=36.92 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=12.6
Q ss_pred cCCcEEEEecchhHH
Q 013153 156 RNKHLAFVGDSMARN 170 (448)
Q Consensus 156 RgKri~FVGDSl~RN 170 (448)
.|++|+|+|||++..
T Consensus 1 ~~~~i~~~GDSit~G 15 (185)
T 3hp4_A 1 MDNTILILGDXLSAA 15 (185)
T ss_dssp -CEEEEEEECTTTTT
T ss_pred CCCeEEEECCccccc
Confidence 378999999999974
No 4
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=55.50 E-value=4.1 Score=35.60 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.1
Q ss_pred cCCcEEEEecchhHH
Q 013153 156 RNKHLAFVGDSMARN 170 (448)
Q Consensus 156 RgKri~FVGDSl~RN 170 (448)
.+++|+|+|||++..
T Consensus 7 ~~~~i~~~GDSit~g 21 (216)
T 3rjt_A 7 PGSKLVMVGDSITDC 21 (216)
T ss_dssp TTCEEEEEESHHHHT
T ss_pred CCCEEEEEecccccc
Confidence 578999999999965
No 5
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=49.68 E-value=4.8 Score=35.01 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.2
Q ss_pred CCcEEEEecchhHH
Q 013153 157 NKHLAFVGDSMARN 170 (448)
Q Consensus 157 gKri~FVGDSl~RN 170 (448)
.|+|+|+|||++..
T Consensus 1 ~~~i~~~GDSit~g 14 (190)
T 1ivn_A 1 ADTLLILGDSLSAG 14 (190)
T ss_dssp CEEEEEEECHHHHC
T ss_pred CCcEEEEecCcccC
Confidence 37899999999875
No 6
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=47.68 E-value=5 Score=35.84 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=32.2
Q ss_pred CCCcEEEEeccccccccceeccCCeeeccccCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCC
Q 013153 247 DQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSH 325 (448)
Q Consensus 247 ~~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~H 325 (448)
..+|+|||..|.-=.... + .... ..+.|+..++..++.+.+. ..+|++-+..|..
T Consensus 71 ~~pd~vvi~~G~ND~~~~-----~------------~~~~-~~~~~~~~l~~~i~~~~~~------~~~vil~~~~p~~ 125 (240)
T 3mil_A 71 SNIVMATIFLGANDACSA-----G------------PQSV-PLPEFIDNIRQMVSLMKSY------HIRPIIIGPGLVD 125 (240)
T ss_dssp CCEEEEEEECCTTTTSSS-----S------------TTCC-CHHHHHHHHHHHHHHHHHT------TCEEEEECCCCCC
T ss_pred CCCCEEEEEeecCcCCcc-----C------------CCCC-CHHHHHHHHHHHHHHHHHc------CCeEEEEcCCCCC
Confidence 479999999986321100 0 0001 1356788888887776432 2478887765543
No 7
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=46.38 E-value=5.3 Score=34.23 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCCcEEEEeccccccccceeccCCeeeccccCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCC
Q 013153 247 DQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSH 325 (448)
Q Consensus 247 ~~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~H 325 (448)
..+|+|||..|.-=... +. . . ..+.|+..++..++.+. ..+|++-+..|..
T Consensus 66 ~~pd~vvi~~G~ND~~~-----~~-----------~---~-~~~~~~~~l~~~i~~~~--------~~~vi~~~~~p~~ 116 (195)
T 1yzf_A 66 EKPDEVVIFFGANDASL-----DR-----------N---I-TVATFRENLETMIHEIG--------SEKVILITPPYAD 116 (195)
T ss_dssp GCCSEEEEECCTTTTCT-----TS-----------C---C-CHHHHHHHHHHHHHHHC--------GGGEEEECCCCCC
T ss_pred cCCCEEEEEeeccccCc-----cC-----------C---C-CHHHHHHHHHHHHHHhc--------CCEEEEEcCCCCc
Confidence 46899999988532110 00 0 1 13567777877776641 4568887776654
No 8
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=42.21 E-value=7 Score=34.39 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=11.2
Q ss_pred CcEEEEecchhHH
Q 013153 158 KHLAFVGDSMARN 170 (448)
Q Consensus 158 Kri~FVGDSl~RN 170 (448)
|+|+|+|||++..
T Consensus 3 ~~i~~~GDSit~G 15 (216)
T 2q0q_A 3 KRILCFGDSLTWG 15 (216)
T ss_dssp EEEEEEESHHHHT
T ss_pred ceEEEEecCcccC
Confidence 6899999999953
No 9
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=41.16 E-value=9.8 Score=33.42 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCC
Q 013153 290 DVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSH 325 (448)
Q Consensus 290 ~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~H 325 (448)
+.|+..++..++.+.+.. ..++|++-+..|..
T Consensus 105 ~~~~~~l~~~i~~l~~~~----p~~~iil~~~~p~~ 136 (214)
T 2hsj_A 105 NEALNNLEAIIQSVARDY----PLTEIKLLSILPVN 136 (214)
T ss_dssp HHHHHHHHHHHHHHHHHC----TTCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHHhC----CCCeEEEEecCCCC
Confidence 467777777777764432 34678888887765
No 10
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=39.97 E-value=16 Score=32.85 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=17.4
Q ss_pred HHHHHHH--cCCcEEEEecchhHHH
Q 013153 149 NAFLDFL--RNKHLAFVGDSMARNQ 171 (448)
Q Consensus 149 ~~FLe~l--RgKri~FVGDSl~RNq 171 (448)
.+|.+.. ...+|+|+|||++...
T Consensus 29 ~~~~~~~~~~~~~i~~~GDSit~g~ 53 (229)
T 1fxw_F 29 NRFVLDCKDKEPDVLFVGDSMVQLM 53 (229)
T ss_dssp HHHHHHHHHCCCSEEEEESHHHHGG
T ss_pred HHHHHHcccCCCCEEEEecchhcCC
Confidence 4566554 4679999999999764
No 11
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=38.41 E-value=11 Score=33.86 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.1
Q ss_pred HHcCCcEEEEecchhHH
Q 013153 154 FLRNKHLAFVGDSMARN 170 (448)
Q Consensus 154 ~lRgKri~FVGDSl~RN 170 (448)
.+..++|+|+|||++..
T Consensus 18 ~~~~~~i~~lGDSit~G 34 (232)
T 3dc7_A 18 HVSFKRPAWLGDSITAN 34 (232)
T ss_dssp CBCCSSEEEEESTTTST
T ss_pred CCCcceEEEEccccccc
Confidence 34568999999999975
No 12
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=38.25 E-value=8.7 Score=34.75 Aligned_cols=36 Identities=3% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhcC-CCCCCceEEEEecCCC
Q 013153 289 YDVLRKALKTTLKTITERRG-SSGDFIDVFLTTFSPS 324 (448)
Q Consensus 289 ~~ayr~alrt~~~~i~~~~~-~~~~~~~VffRt~SP~ 324 (448)
.+.|+..|+..++.+.+... .....+.|++-+..|.
T Consensus 122 ~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~ 158 (232)
T 3dci_A 122 AEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPC 158 (232)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCc
Confidence 35678888888877644320 0013567888774443
No 13
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=37.21 E-value=8.4 Score=34.22 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.6
Q ss_pred HcCCcEEEEecchhHH
Q 013153 155 LRNKHLAFVGDSMARN 170 (448)
Q Consensus 155 lRgKri~FVGDSl~RN 170 (448)
...++|+|+|||++..
T Consensus 18 ~~~~~i~~lGDSit~g 33 (218)
T 1vjg_A 18 KTQIRICFVGDSFVNG 33 (218)
T ss_dssp CEEEEEEEEESHHHHT
T ss_pred CCCceEEEEccccccC
Confidence 3567999999999986
No 14
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=34.95 E-value=27 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 013153 16 LLPWTFYAVLSVAIFRLY 33 (448)
Q Consensus 16 ~~~~~~~~~~~~~l~~~~ 33 (448)
..+|++|++-||.|+.|.
T Consensus 5 ~~tY~~~g~WpllLllLa 22 (29)
T 2k8j_X 5 GAAYALYGVWPLLLLLLA 22 (29)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHh
Confidence 468999999999887553
No 15
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=34.78 E-value=14 Score=33.18 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=31.7
Q ss_pred CCcEEEEeccccccccceeccCCeeeccccCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCC
Q 013153 248 QIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSH 325 (448)
Q Consensus 248 ~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~H 325 (448)
.+|+|||..|.-=.. .-.+.|...++..++.+.+.. .+++|++-+..|..
T Consensus 93 ~pd~vvi~~G~ND~~------------------------~~~~~~~~~l~~~i~~l~~~~----p~~~ii~~~~~p~~ 142 (232)
T 1es9_A 93 RPKIVVVWVGTNNHG------------------------HTAEQVTGGIKAIVQLVNERQ----PQARVVVLGLLPRG 142 (232)
T ss_dssp CCSEEEEECCTTCTT------------------------SCHHHHHHHHHHHHHHHHHHS----TTCEEEEECCCCCS
T ss_pred CCCEEEEEeecCCCC------------------------CCHHHHHHHHHHHHHHHHHHC----CCCeEEEecCCCCC
Confidence 689999988753110 013457777777777764432 35678888887643
No 16
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=33.89 E-value=15 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=13.5
Q ss_pred HcCCcEEEEecchhHH
Q 013153 155 LRNKHLAFVGDSMARN 170 (448)
Q Consensus 155 lRgKri~FVGDSl~RN 170 (448)
..+++|+|+|||++..
T Consensus 24 ~~~~~iv~lGDSiT~G 39 (274)
T 3bzw_A 24 WQGKKVGYIGDSITDP 39 (274)
T ss_dssp TTTCEEEEEESTTTCT
T ss_pred CCCCEEEEEecCcccC
Confidence 4678999999999864
No 17
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=33.77 E-value=13 Score=32.18 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCC
Q 013153 289 YDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSH 325 (448)
Q Consensus 289 ~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~H 325 (448)
.+.|+..++..++.+.+ ....|++-+..|..
T Consensus 96 ~~~~~~~~~~~i~~~~~------~~~~vil~~~~p~~ 126 (204)
T 3p94_A 96 LENVFGNLVSMAELAKA------NHIKVIFCSVLPAY 126 (204)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCEEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHh------CCCeEEEEeCCCCC
Confidence 35677777777776532 24578888887764
No 18
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=30.57 E-value=12 Score=33.18 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.8
Q ss_pred CCcEEEEecchhHH
Q 013153 157 NKHLAFVGDSMARN 170 (448)
Q Consensus 157 gKri~FVGDSl~RN 170 (448)
..+|+|+|||++..
T Consensus 5 ~~~i~~~GDSit~G 18 (215)
T 2vpt_A 5 TIKIMPVGDSCTEG 18 (215)
T ss_dssp EEEEEEEESHHHHT
T ss_pred ceEEEecccccccC
Confidence 34899999999875
No 19
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=29.46 E-value=25 Score=34.89 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 154 FLRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 154 ~lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
.+.|++|+||||-.+ |...||+.+|..
T Consensus 158 ~l~gl~va~vGD~~~-~va~Sl~~~~~~ 184 (328)
T 3grf_A 158 GFKGIKFAYCGDSMN-NVTYDLMRGCAL 184 (328)
T ss_dssp TGGGCCEEEESCCSS-HHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCc-chHHHHHHHHHH
Confidence 478999999999876 699999988764
No 20
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=29.45 E-value=8.7 Score=29.97 Aligned_cols=15 Identities=53% Similarity=0.769 Sum_probs=11.9
Q ss_pred CcEEEEe-cchhHHHH
Q 013153 158 KHLAFVG-DSMARNQL 172 (448)
Q Consensus 158 Kri~FVG-DSl~RNq~ 172 (448)
.+++||| ||-+|-|+
T Consensus 55 ~~lIfvG~DSKgrkQY 70 (77)
T 1vcc_A 55 TRLIFVGSDSKGRRQY 70 (77)
T ss_dssp TSEEEEEECTTSCEEE
T ss_pred CceEEEeecCCCceee
Confidence 4599999 88888764
No 21
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=27.64 E-value=28 Score=35.18 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.0
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
++|++|+||||-.+ |...||+.++..
T Consensus 178 l~glkva~vGD~~n-nva~Sl~~~~~~ 203 (365)
T 4amu_A 178 LKNKKIVFIGDYKN-NVGVSTMIGAAF 203 (365)
T ss_dssp CTTCEEEEESSTTS-HHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCc-chHHHHHHHHHH
Confidence 57999999999876 689999988763
No 22
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=27.39 E-value=29 Score=34.11 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.8
Q ss_pred Hc-CCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LR-NKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lR-gKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
++ |++|+|||| . -|...|++.++..
T Consensus 143 l~~gl~va~vGD-~-~~va~Sl~~~~~~ 168 (307)
T 3tpf_A 143 QNGIAKVAFIGD-S-NNMCNSWLITAAI 168 (307)
T ss_dssp GGGCCEEEEESC-S-SHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C-CccHHHHHHHHHH
Confidence 56 999999999 3 5699999988764
No 23
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=27.31 E-value=27 Score=34.30 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.7
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
++|++|+||||-..-|...||+.++..
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~ 171 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTR 171 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHH
Confidence 579999999997766889999887764
No 24
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=26.56 E-value=20 Score=35.13 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=12.8
Q ss_pred cCCcEEEEecchhHH
Q 013153 156 RNKHLAFVGDSMARN 170 (448)
Q Consensus 156 RgKri~FVGDSl~RN 170 (448)
..++|+|+|||++-.
T Consensus 131 ~~~~I~~iGDSIT~G 145 (347)
T 2waa_A 131 PQRKILVLGDSVTCG 145 (347)
T ss_dssp CSEEEEEEESTTTTT
T ss_pred CCceEEEeecccccc
Confidence 567999999999864
No 25
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=26.55 E-value=22 Score=35.04 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCceEEEEe
Q 013153 289 YDVLRKALKTTLKTITERRGSSGDFIDVFLTT 320 (448)
Q Consensus 289 ~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt 320 (448)
.+.|+.+++..++.+.+++ .++.|++-+
T Consensus 266 ~~~~~~~l~~li~~ir~~~----p~a~Iil~~ 293 (366)
T 2w9x_A 266 HADYVANYVKFVKQLHSNN----ARAQFILMN 293 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCeEEEEe
Confidence 4678888888888765443 345677766
No 26
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=24.60 E-value=21 Score=34.65 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=12.7
Q ss_pred cCCcEEEEecchhHH
Q 013153 156 RNKHLAFVGDSMARN 170 (448)
Q Consensus 156 RgKri~FVGDSl~RN 170 (448)
..++|+|+|||++-.
T Consensus 121 ~~~~I~~iGDSiT~G 135 (341)
T 2wao_A 121 LERKIEFIGDSITCA 135 (341)
T ss_dssp CSEEEEEEESHHHHT
T ss_pred CCceEEEEccccccC
Confidence 467999999999864
No 27
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=24.04 E-value=38 Score=34.57 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=20.8
Q ss_pred HcCCcEEEEec---chhH--HHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGD---SMAR--NQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGD---Sl~R--Nq~eSLlCLL~~ 181 (448)
++|++|+|||| |.+| |...||+.++..
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~ 220 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTR 220 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGG
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHH
Confidence 46889999998 3344 788999987764
No 28
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=23.88 E-value=39 Score=33.03 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.3
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhccc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLSTV 182 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~~ 182 (448)
++|++|++|||-..-|...||+-++..-
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~~ 174 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTRF 174 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGS
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 5799999999987667899999987643
No 29
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=23.44 E-value=36 Score=33.46 Aligned_cols=28 Identities=36% Similarity=0.415 Sum_probs=23.2
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhccc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLSTV 182 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~~ 182 (448)
++|++|++|||-..-|...||+-++..-
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~~ 179 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAKF 179 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhC
Confidence 5799999999976667899999988653
No 30
>1fll_X B-cell surface antigen CD40; TRAF3 with CD40 peptide, TNF signaling, apoptosis; 3.50A {Homo sapiens}
Probab=22.99 E-value=26 Score=21.79 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=8.6
Q ss_pred CCeecccCCC
Q 013153 415 NDCVHWCLPG 424 (448)
Q Consensus 415 ~DC~HWCLPG 424 (448)
+|-+|||+|=
T Consensus 7 qeTl~~~qPV 16 (26)
T 1fll_X 7 QETLHGSQPV 16 (26)
T ss_dssp CCCCCCSSSC
T ss_pred hHHhhcCccc
Confidence 5999999984
No 31
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=22.57 E-value=4.4 Score=38.29 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=12.4
Q ss_pred CCcEEEEecchhHH
Q 013153 157 NKHLAFVGDSMARN 170 (448)
Q Consensus 157 gKri~FVGDSl~RN 170 (448)
+.+++||||.|.|+
T Consensus 146 AHKLVfIGDTL~r~ 159 (229)
T 3t6g_B 146 AHKLVFIGDTLSRQ 159 (229)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred eeeeeeecchHHHh
Confidence 77899999999985
No 32
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Probab=22.38 E-value=63 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHHHc-----CCcEEEEecchhHHHHHHHHHhh
Q 013153 150 AFLDFLR-----NKHLAFVGDSMARNQLESLLCML 179 (448)
Q Consensus 150 ~FLe~lR-----gKri~FVGDSl~RNq~eSLlCLL 179 (448)
+.++.+. .++|+++|||.+=|....+...+
T Consensus 83 ~al~~l~~~~~~~~~i~l~G~SaGG~lA~~~a~~~ 117 (274)
T 2qru_A 83 ETFQLLNEEIIQNQSFGLCGRSAGGYLMLQLTKQL 117 (274)
T ss_dssp HHHHHHHHHTTTTCCEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEEEECHHHHHHHHHHHHH
Confidence 3455554 67999999999999988877544
No 33
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=22.17 E-value=37 Score=34.05 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.5
Q ss_pred cCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 156 RNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 156 RgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
+|++|+||||- .|...||+.+|..
T Consensus 187 ~glkva~vGD~--~nva~Sl~~~l~~ 210 (353)
T 3sds_A 187 EGLKIAWVGDA--NNVLFDLAIAATK 210 (353)
T ss_dssp TTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCEEEEECCC--chHHHHHHHHHHH
Confidence 79999999997 3699999988764
No 34
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=22.14 E-value=43 Score=34.35 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=22.1
Q ss_pred HcCCcEEEEec---chhH--HHHHHHHHhhccc
Q 013153 155 LRNKHLAFVGD---SMAR--NQLESLLCMLSTV 182 (448)
Q Consensus 155 lRgKri~FVGD---Sl~R--Nq~eSLlCLL~~~ 182 (448)
++|++|++||| |.+| |...||+-+|..-
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~l 218 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRL 218 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGG
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHc
Confidence 56899999997 3466 8899999887743
No 35
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=21.06 E-value=42 Score=32.89 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=22.4
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
+.|++|+||||-..-|...||+.++..
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~ 175 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSL 175 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHh
Confidence 579999999997655788999988764
No 36
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=20.54 E-value=42 Score=32.96 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=21.0
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
++|++|+||||- -|...||+.++..
T Consensus 152 l~glkva~vGD~--~~va~Sl~~~~~~ 176 (309)
T 4f2g_A 152 IRGKTVAWVGDA--NNMLYTWIQAARI 176 (309)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--cchHHHHHHHHHH
Confidence 579999999994 5699999988764
No 37
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=20.22 E-value=43 Score=33.41 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.9
Q ss_pred HcCCcEEEEecchhHHHHHHHHHhhcc
Q 013153 155 LRNKHLAFVGDSMARNQLESLLCMLST 181 (448)
Q Consensus 155 lRgKri~FVGDSl~RNq~eSLlCLL~~ 181 (448)
++|++|+||||- -|...||+.++..
T Consensus 177 l~glkva~vGD~--~nva~Sl~~~~~~ 201 (340)
T 4ep1_A 177 FKGIKLAYVGDG--NNVCHSLLLASAK 201 (340)
T ss_dssp CTTCEEEEESCC--CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHH
Confidence 579999999996 5589999987764
No 38
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=20.01 E-value=37 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.6
Q ss_pred HcCCcEEEEecchhHH
Q 013153 155 LRNKHLAFVGDSMARN 170 (448)
Q Consensus 155 lRgKri~FVGDSl~RN 170 (448)
..+++|+|+|||++..
T Consensus 160 ~~~~~Iv~lGDSiT~G 175 (375)
T 2o14_A 160 VTNRTIYVGGDSTVCN 175 (375)
T ss_dssp CCCCEEEEEECTTTSC
T ss_pred CCCcEEEEecCccccC
Confidence 3567999999999886
Done!