Citrus Sinensis ID: 013155

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MAEAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDRKRLLKEHHLGSDVSLKNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKEAGRKGRSSKKKGNPKSDQGQCIRSEKQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPDEENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGGGGLQPNR

ccccccccEEEEEccHHHHHHccccccccHHHHHHcccHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEEcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccccEEEEHHHHHHHHHccEEEEEcccEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccc

ccccEEEEEEEcccccccEEEEEcccccccccccccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHccccccccccccEcccccccccHHHHHHHccHHccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccEEEEEEccccccHcHHHHcccccccccccccccccHHccccccccHccccccccccccccccccccHHHccccccccccccccHEEcccccccccccccccccccccEEEEEEccccccEEEEEccccEEEEEcHHHHHHHHcccEEEcccEEEcccccccccHccEEEEEccccccEcccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHccccccccc

MAEAEILELyelpysdlkllcldntcssstEEIKRFETVRTSVMenlgpggpgllsitsvpnasihrRNLLPLARKLALLNPDDRKRLLkehhlgsdvslknpernvSSFAMQLRYKQglestqckfssraddnvkdqdlgqlpdnefKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKEagrkgrsskkkgnpksdqgqcirsekqtectnvdgdsdeagisgthsnlwqqwhydygvftvltdpffilpyyssesrgsdqgcpspgghtylqildpnknkvrmvksspesfiiqvgesadilskgklrstlhcvcrptklenlsRETFVVFLQpawnktfsisdyptencnlsgqgsgapdeenppvklGANKLAEAIQKmipplssrlndgmtfaefshettrqyygggglqpnr

MAEAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDRKRLLKehhlgsdvslknpernVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYhstldsvvlkeagrkgrsskkkgnpksdqgqcirsekqtectnvdgDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRptklenlsrETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPDEENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHEttrqyygggglqpnr

MAEAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRrnllplarklallnpDDRKRLLKEHHLGSDVSLKNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKEAgrkgrsskkkgNPKSDQGQCIRSEKQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPDEENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGGGGLQPNR

*****ILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLG*GGPGLLSITSVPNASIHRRNLLPLARKLALL*******************************************************************FKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVL**********************************************THSNLWQQWHYDYGVFTVLTDPFFILPYY******************YLQIL***************SFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPT*********************************************************************

*****IL*LYELPYSDLKLLCLDNTCS**********TVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDR*******************RNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKE************************************************LWQQWHYDYGVFTVLTDPFFIL****************PGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTK**NLSRETFVVFLQPAWNKTFSISDYPT***************ENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYY*********

MAEAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDRKRLLKEHHLGSDVSLKNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKE*********************IRSEKQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSS*********PSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNL***********NPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGGGGLQPNR

**EAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDRKRLLKEHHLGSDVSLKNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDS*V*************************************************SNLWQQWHYDYGVFTVLTDPFFILPYY******SDQGCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSG******PPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGGG******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
224066431		460	predicted protein [Populus trichocarpa]	0.982	0.956	0.590	1e-143
359479715		548	PREDICTED: uncharacterized protein LOC10	0.953	0.779	0.589	1e-142
449491472		446	PREDICTED: uncharacterized protein LOC10	0.957	0.961	0.554	1e-134
449458474		446	PREDICTED: uncharacterized protein LOC10	0.957	0.961	0.554	1e-134
255567502		444	hypothetical protein RCOM_0646070 [Ricin	0.953	0.961	0.559	1e-128
356500170		403	PREDICTED: uncharacterized protein LOC10	0.875	0.972	0.554	1e-128
357440625		415	hypothetical protein MTR_1g071470 [Medic	0.904	0.975	0.548	1e-127
297817666		417	hypothetical protein ARALYDRAFT_486835 [	0.921	0.990	0.557	1e-121
30695767		403	2OG-Fe(II) oxygenase domain-containing p	0.897	0.997	0.518	1e-116
7523411		433	putative protein [Arabidopsis thaliana]	0.881	0.912	0.515	1e-113

>gi\|224066431\|ref\|XP_002302100.1\| predicted protein [Populus trichocarpa] gi\|222843826\|gb\|EEE81373.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 275/466 (59%), Positives = 337/466 (72%), Gaps = 26/466 (5%)

Query: 1   MAEAEILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSV 60
           M EA +LELYEL YSDL LL   +      EE  R E ++ ++ME LGP GPGLLSIT V
Sbjct: 1   MEEAGVLELYELHYSDLLLLSSTSPVPEEGEE--RAERIKKTIMETLGPTGPGLLSITGV 58

Query: 61  PNASIHRRNLLPLARKLALLNPDDRKRLLKEHHLGSDVSLKNPERNVSSFAMQLRYKQGL 120
           P ASI R+ LLPLA KLALL+ D RK +LKEH++GSDV LKNP+RNVSSFAMQL+Y Q L
Sbjct: 59  PKASILRQRLLPLASKLALLDHDRRKHILKEHNMGSDVPLKNPDRNVSSFAMQLKYAQAL 118

Query: 121 ESTQCKFSSRA-----------DDNVKDQDLGQLPDNEFKNLGNMFKELGFCMIELGLCL 169
           ES   K ++RA           DDN  D ++   P++EF NL ++F+ELG+CM+ELGL +
Sbjct: 119 ESAPGKTNNRARSNSNLESAHLDDN--DDEVTDSPEDEFANLSDIFRELGYCMMELGLRV 176

Query: 170 ARICDKAIGGQELEQSLLESSVAKGRLIHYHSTLDSVVLKEAGRKGRSSKKKGNPKSDQG 229
           A+ICD AIGGQELE+SLLES  AKGRLIHYHS+LD++++K +GR+  S+KK+   + +Q 
Sbjct: 177 AQICDMAIGGQELERSLLESGTAKGRLIHYHSSLDNLLIKASGRRKGSTKKQAYCEKNQV 236

Query: 230 QCIRSE-KQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESR 288
              RSE KQ+E  N+  + +E G SG   NLWQQWHYDYG+FTVLT P F++P   SE+ 
Sbjct: 237 LLSRSEQKQSERCNLVANVNEVGSSGNQGNLWQQWHYDYGIFTVLTAPMFLMPSQLSENT 296

Query: 289 GSDQ-------GCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRS 341
            +DQ        CP P GH+YLQI D N N V MVK+S ESFIIQVGESADILS+GKLRS
Sbjct: 297 ATDQFPVFCDKDCPCPTGHSYLQIFDANTNDVLMVKTSSESFIIQVGESADILSRGKLRS 356

Query: 342 TLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPDEENPPVKL 401
           TLHCVCRP  LENLSRETFVVFLQPAW+KTFS+SDY  ++  L   G  + +E N   + 
Sbjct: 357 TLHCVCRPPNLENLSRETFVVFLQPAWSKTFSMSDYNVQHNML---GRHSSNEGNGLSEH 413

Query: 402 GANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGGGGLQPN 447
             N++A  I K++PPLSSRL DGMTFAEFS ETT+QYYGG GLQ N
Sbjct: 414 DFNEVAREIHKIVPPLSSRLKDGMTFAEFSRETTKQYYGGSGLQSN 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359479715\|ref\|XP_003632344.1\| PREDICTED: uncharacterized protein LOC100853989 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449491472\|ref\|XP_004158909.1\| PREDICTED: uncharacterized protein LOC101226432 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449458474\|ref\|XP_004146972.1\| PREDICTED: uncharacterized protein LOC101222496 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255567502\|ref\|XP_002524730.1\| hypothetical protein RCOM_0646070 [Ricinus communis] gi\|223535914\|gb\|EEF37573.1\| hypothetical protein RCOM_0646070 [Ricinus communis]	Back alignment and taxonomy information

>gi\|356500170\|ref\|XP_003518906.1\| PREDICTED: uncharacterized protein LOC100786614 [Glycine max]	Back alignment and taxonomy information

>gi\|357440625\|ref\|XP_003590590.1\| hypothetical protein MTR_1g071470 [Medicago truncatula] gi\|355479638\|gb\|AES60841.1\| hypothetical protein MTR_1g071470 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297817666\|ref\|XP_002876716.1\| hypothetical protein ARALYDRAFT_486835 [Arabidopsis lyrata subsp. lyrata] gi\|297322554\|gb\|EFH52975.1\| hypothetical protein ARALYDRAFT_486835 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30695767\|ref\|NP_191888.2\| 2OG-Fe(II) oxygenase domain-containing protein [Arabidopsis thaliana] gi\|18176035\|gb\|AAL59972.1\| unknown protein [Arabidopsis thaliana] gi\|22136904\|gb\|AAM91796.1\| unknown protein [Arabidopsis thaliana] gi\|332646941\|gb\|AEE80462.1\| 2OG-Fe(II) oxygenase domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7523411\|emb\|CAB86430.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		448
TAIR\|locus:2077289		403	AT3G63290 [Arabidopsis thalian	0.544	0.605	0.524	1.1e-80
ASPGD\|ASPL0000056906		362	AN0427 [Emericella nidulans (t	0.232	0.287	0.290	3.3e-07

TAIR\|locus:2077289 AT3G63290 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 663 (238.4 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
 Identities = 138/263 (52%), Positives = 177/263 (67%)

Query:   139 DLGQLPDNEFKNLGNMFKELGFCMIELGLCLARICDKAIGGQELEQSLLESSVAKGRLIH 198
             DL +  D+ F NLG  FKELGFCM ELGL +AR+CD+ IGG  LE+SLL+S  AKGRLIH
Sbjct:   127 DLQEDDDDAFTNLGGAFKELGFCMRELGLSIARLCDREIGGGLLEESLLDSCTAKGRLIH 186

Query:   199 YHSTLDSVVLKEAXXXXXXXXXXXNPKSDQGQCIRSEKQTECTNVDGDSDEAGISGTHSN 258
             YHS  D   L+E+           N  S + + +++  + E    +G    AG+SG+H N
Sbjct:   187 YHSAADKYALRESQRRNQSG----NRVSSKRR-VQNAAEQELNRRNG----AGLSGSHFN 237

Query:   259 LWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRMVKS 318
             LWQQWHYDYG+FTVLTDP F+ PY       S Q       H+YLQI  P+KNK  MVK+
Sbjct:   238 LWQQWHYDYGIFTVLTDPMFLSPY-------SYQEFSLMSSHSYLQIYHPSKNKFYMVKT 290

Query:   319 SPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYP 378
               +SF++Q+GESADILSKGKLRSTLHCVC+P KL+++SRETFVVFL P W++TFS+S+Y 
Sbjct:   291 PQDSFLVQIGESADILSKGKLRSTLHCVCKPEKLDHVSRETFVVFLHPKWSQTFSVSEYT 350

Query:   379 TENCNLSGQGSGAPDEEN--PPV 399
              E+   S +    PD +N  PP+
Sbjct:   351 MEHLR-SDEVVPRPDLQNIVPPL 372

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

ASPGD\|ASPL0000056906 AN0427 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		448
COG3491		322	COG3491, PcbC, Isopenicillin N synthase and relate	3e-06
pfam03171		96	pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe	1e-04
PLN02704		335	PLN02704, PLN02704, flavonol synthase	0.002

>gnl\|CDD\|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 35/136 (25%)

Query: 279 ILPYYSSESRGSDQGCPSPGGHT-Y-------------LQILDPNKNKVRMVKSSPESFI 324
           +L Y S  +R    G    G HT Y             L++  PN      V   P + +
Sbjct: 178 LLRYPSRPAREGADG---VGAHTDYGLLTLLFQDDVGGLEVRPPN-GGWLDVPPIPGTLV 233

Query: 325 IQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENC-N 383
           + +G+  +  + G+LRST+H V  P  ++   R +   FL+P         D        
Sbjct: 234 VNIGDMLERWTNGRLRSTVHRVRNPPGVD---RYSIPFFLEPN-------FDAEIAPLLP 283

Query: 384 LSGQGSGAPDEENPPV 399
           L       P+  N P 
Sbjct: 284 LC------PEAANEPR 293

Length = 322

>gnl\|CDD\|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily	Back alignment and domain information

>gnl\|CDD\|166345 PLN02704, PLN02704, flavonol synthase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		448
PTZ00273		320	oxidase reductase; Provisional	100.0
PLN02216		357	protein SRG1	100.0
PLN02485		329	oxidoreductase	100.0
PLN02254		358	gibberellin 3-beta-dioxygenase	100.0
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN03002		332	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02904		357	oxidoreductase	100.0
PLN02276		361	gibberellin 20-oxidase	100.0
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	100.0
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	100.0
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
COG3491		322	PcbC Isopenicillin N synthase and related dioxygen	100.0
PLN02997		325	flavonol synthase	100.0
PLN02947		374	oxidoreductase	100.0
PLN02156		335	gibberellin 2-beta-dioxygenase	100.0
KOG0143		322	consensus Iron/ascorbate family oxidoreductases [S	100.0
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02704		335	flavonol synthase	100.0
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	100.0
PLN02393		362	leucoanthocyanidin dioxygenase like protein	100.0
PLN02365		300	2-oxoglutarate-dependent dioxygenase	100.0
PLN02403		303	aminocyclopropanecarboxylate oxidase	100.0
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	99.85
PF14226		116	DIOX_N: non-haem dioxygenase in morphine synthesis	99.57
PLN03176		120	flavanone-3-hydroxylase; Provisional	99.35
PF13640		100	2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily;	91.64
PRK05467		226	Fe(II)-dependent oxygenase superfamily protein; Pr	83.2

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.1e-59  Score=472.99  Aligned_cols=303  Identities=18%  Similarity=0.173  Sum_probs=236.5

Q ss_pred             ccCcceeEeCccccccccCCCCCCchhhHHHHHHHHHHHHHhhCCCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCHHH
Q 013155            5 EILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDD   84 (448)
Q Consensus         5 ~~~~~~~id~sdl~~~~~~~~~~~~~~~~~~~~~~~~~I~~A~~~~G~G~l~~~gvp~~~el~~~l~~~a~~FF~LP~ee   84 (448)
                      +...||+||++.|.    +++       ...+.+++++|.+||++||||+|.+|||+  .+++++++.++++||+||.|+
T Consensus         2 ~~~~iPvIDl~~~~----~~~-------~~~~~~~~~~l~~A~~~~Gff~v~nhgi~--~~l~~~~~~~~~~fF~lP~e~   68 (320)
T PTZ00273          2 TRASLPVIDVSPLF----GGE-------SAEKMRVAKQIDEACRTWGFFYIVGHPIP--QERIEKVLKMAKTFFSLPMEE   68 (320)
T ss_pred             CCCCCCEEecHHhc----CCC-------hHHHHHHHHHHHHHHHhCCEEEEECCCCC--HHHHHHHHHHHHHHHcCCHHH
Confidence            35689999999998    432       24577899999999999999999999998  899999999999999999999


Q ss_pred             HHhhccc---CCCCccccC------CCCCCcccccccccccccccccccccccCCCCCCCcCCcCCCCCCCCcccHHHHH
Q 013155           85 RKRLLKE---HHLGSDVSL------KNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMF  155 (448)
Q Consensus        85 K~k~~~~---~~~G~~~~~------~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WP~~~~p~fr~~~  155 (448)
                      |+++...   ..+||....      ..+.+.+|+|.....+....      ..  .....+...+|.||+. +|+||+++
T Consensus        69 K~~~~~~~~~~~~GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~------~~--~~~~~~~~~~n~wP~~-~p~fr~~~  139 (320)
T PTZ00273         69 KLKIDIRKSRLHRGYGAFGAEQLDPSKPYDYKETFDMGCHLPKDH------PD--VMAGKPLRGPNNHPTQ-VEGWMELM  139 (320)
T ss_pred             HhhhccCCCCCCCCCCCccccccCCCCCCCccceEEeeccCCccc------ch--hhccccccCCCCCCCc-chHHHHHH
Confidence            9998543   457885211      11234556654422111100      00  0000112347889974 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC--chhHHHHhhcCcCceeeecccCCCCchHHHhhhcccCCCCCCCCCCCCCCccccc
Q 013155          156 KELGFCMIELGLCLARICDKAIG--GQELEQSLLESSVAKGRLIHYHSTLDSVVLKEAGRKGRSSKKKGNPKSDQGQCIR  233 (448)
Q Consensus       156 ~~y~~~m~~l~~~Ll~~la~~L~--~~~l~~~~~~~~~~~lRllhY~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (448)
                      ++|+..|.+|+..|+++|+++||  .++|.+.+.. ..+.+|++||||.+...                           
T Consensus       140 ~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~~~~lrl~~YP~~~~~~---------------------------  191 (320)
T PTZ00273        140 ETHYRDMQALALVLLRALALAIGLREDFFDSKFME-PLSVFRMKHYPALPQTK---------------------------  191 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhCC-CcceeeeeecCCCCCcc---------------------------
Confidence            99999999999999999999997  5788877754 46789999987643210                           


Q ss_pred             ccccccccCCCCCCCccCcCCCCCCccceecccCCceeeEeCcccccccCCCCCCCCCCCCCCCCCcccEEEEcCCCCcE
Q 013155          234 SEKQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKV  313 (448)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~HtD~g~lTlL~q~~f~d~~~~~~~~~~~~~~p~p~g~~GLQV~~~~~G~W  313 (448)
                                            ...+|+++|||+|+||+|+|    |                  .++||||++ ++|+|
T Consensus       192 ----------------------~~~~g~~~HTD~g~lTlL~q----d------------------~~~GLqV~~-~~g~W  226 (320)
T PTZ00273        192 ----------------------KGRTVCGEHTDYGIITLLYQ----D------------------SVGGLQVRN-LSGEW  226 (320)
T ss_pred             ----------------------ccCcccccccCCCeEEEEec----C------------------CCCceEEEC-CCCCE
Confidence                                  14579999999999999987    3                  245999997 58999


Q ss_pred             EEccCCCCcEEeehhHHHHHHhCCcccCcccceecCCCCCCCCeeEEEeeecCCCCCeEecCCCCccccccCCCCCCCCC
Q 013155          314 RMVKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPD  393 (448)
Q Consensus       314 i~V~p~p~a~VVNIGD~lqi~SNG~~kSt~HRVv~p~~~~~~~R~Sia~F~~P~~d~~I~~p~~~~~~~~~~~~~~~~~~  393 (448)
                      ++|+|+||+|||||||+||+||||+||||+|||+.+    ..+|||+|||++|+.|++|.|++.|..+            
T Consensus       227 i~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~----~~~R~Si~~F~~p~~d~~i~pl~~~~~~------------  290 (320)
T PTZ00273        227 MDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVNT----GVERYSMPFFCEPNPNVIIKCLDNCHSE------------  290 (320)
T ss_pred             EeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccCC----CCCeEEEEEEEcCCCCceEecCccccCC------------
Confidence            999999999999999999999999999999999864    3589999999999999999998776431            


Q ss_pred             CCCCCcccchhhhHHhhhhcCCCCccccCCCCcHHHHHHHHHHhhhCC
Q 013155          394 EENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQYYGG  441 (448)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~ppl~~r~~~~~tf~ef~~~~~~~y~~~  441 (448)
                                         ..|+.    |+.+||+||+...++.+|..
T Consensus       291 -------------------~~~~~----y~~~~~~e~~~~~~~~~~~~  315 (320)
T PTZ00273        291 -------------------ENPPK----YPPVRAVDWLLKRFAETYAY  315 (320)
T ss_pred             -------------------CCccc----CCceeHHHHHHHHHHHHHHH
Confidence                               12332    45599999999999988863

>PLN02216 protein SRG1	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>PLN02997 flavonol synthase	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN02393 leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02403 aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A	Back alignment and domain information

>PLN03176 flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A	Back alignment and domain information

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		448
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	7e-06
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	7e-05
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	1e-04

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311	Back alignment and structure

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 31/138 (22%)

Query: 264 HYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKV-RMVKSSPES 322
           HYD  + T++                  Q  P   G      L          +   P++
Sbjct: 183 HYDLSMVTLI------------------QQTPCANG---FVSLQAEVGGAFTDLPYRPDA 221

Query: 323 FIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRE--TFVVFLQPAWNKTFSISDYPTE 380
            ++  G  A +++ G++++  H V  P + +       + V FL+P  +  F+ S     
Sbjct: 222 VLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD--FTFSVPLAR 279

Query: 381 NCNLSGQGSGAPDEENPP 398
            C     G     +    
Sbjct: 280 EC-----GFDVSLDGETA 292

PyMOL of 1dcs

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331	Back alignment and structure

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		448
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	100.0
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	100.0
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	100.0
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	100.0
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	100.0
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	100.0

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}	Back alignment and structure

Probab=100.00  E-value=2.2e-61  Score=484.14  Aligned_cols=295  Identities=15%  Similarity=0.125  Sum_probs=231.8

Q ss_pred             cCcceeEeCccccccccCCCCCCchhhHHHHHHHHHHHHHhhCCCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCHHHH
Q 013155            6 ILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDDR   85 (448)
Q Consensus         6 ~~~~~~id~sdl~~~~~~~~~~~~~~~~~~~~~~~~~I~~A~~~~G~G~l~~~gvp~~~el~~~l~~~a~~FF~LP~eeK   85 (448)
                      ..+||+|||++|.    +           .+.+++++|.+||++||||+|++||||  .+++++++..+++||+||.|+|
T Consensus         4 ~~~iPvIDls~~~----~-----------~~~~~~~~l~~A~~~~GFf~v~nHGi~--~~~~~~~~~~~~~fF~lP~e~K   66 (312)
T 3oox_A            4 TSAIDPVSFSLYA----K-----------DFTRFAQELGASFERYGFAVLSDYDLD--QARIDAAVDSAKAFFALPVETK   66 (312)
T ss_dssp             CCSSCCEETHHHH----H-----------CHHHHHHHHHHHHHHHSEEEEESCCSC--HHHHHHHHHHHHHHHTSCHHHH
T ss_pred             CCCCCeEEChHhc----c-----------cHHHHHHHHHHHHHhCcEEEEECCCCC--HHHHHHHHHHHHHHHCCCHHHH
Confidence            4579999999997    1           356799999999999999999999999  9999999999999999999999


Q ss_pred             Hhhccc--CCCCccccCC------CCCCcccccccccccccccccccccccCCCCCCCcCCcCCCCCCCCcccHHHHHHH
Q 013155           86 KRLLKE--HHLGSDVSLK------NPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKE  157 (448)
Q Consensus        86 ~k~~~~--~~~G~~~~~~------~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WP~~~~p~fr~~~~~  157 (448)
                      +++...  ..+||.....      ...+.+++|.........            .+.......|.||++ +|+||+++++
T Consensus        67 ~~~~~~~~~~~Gy~~~g~e~~~~~~~~D~kE~~~~~~~~~~~------------~~~~~~~~~n~wP~~-~p~fr~~~~~  133 (312)
T 3oox_A           67 KQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHMGRDLPPG------------HRFRAHMADNVWPAE-IPAFKHDVSW  133 (312)
T ss_dssp             GGGBSSGGGTSEEECCCCCCSTTSCSCCCCEEEEECCCCCTT------------CGGGGTSCCCCCCTT-STTHHHHHHH
T ss_pred             hhhccCCCCccccccccceecCCCCCCCceeeeEeecCCCcC------------CcchhccCCCCCCCc-CHHHHHHHHH
Confidence            999763  5678842110      112334444321110000            000112346789975 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC--chhHHHHhhcCcCceeeecccCCCCchHHHhhhcccCCCCCCCCCCCCCCccccccc
Q 013155          158 LGFCMIELGLCLARICDKAIG--GQELEQSLLESSVAKGRLIHYHSTLDSVVLKEAGRKGRSSKKKGNPKSDQGQCIRSE  235 (448)
Q Consensus       158 y~~~m~~l~~~Ll~~la~~L~--~~~l~~~~~~~~~~~lRllhY~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (448)
                      |+.+|.+|+..|+++|+++||  +++|.+.+.. ..+.+|++||||.+..                              
T Consensus       134 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~~~~lr~~~Ypp~~~~------------------------------  182 (312)
T 3oox_A          134 LYNSLDGMGGKVLEAIATYLKLERDFFKPTVQD-GNSVLRLLHYPPIPKD------------------------------  182 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHTT-CCCEEEEEEECCCSSC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcC-CcceeeeEecCCCCCC------------------------------
Confidence            999999999999999999997  6788888865 4678999999774431                              


Q ss_pred             ccccccCCCCCCCccCcCCCCCCccceecccCCceeeEeCcccccccCCCCCCCCCCCCCCCCCcccEEEEcCCCCcEEE
Q 013155          236 KQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRM  315 (448)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~HtD~g~lTlL~q~~f~d~~~~~~~~~~~~~~p~p~g~~GLQV~~~~~G~Wi~  315 (448)
                                          ...+|+++|||+|+||||+|    |                  +++||||++ ++|+|++
T Consensus       183 --------------------~~~~g~~~HtD~g~lTlL~q----d------------------~v~GLqV~~-~~g~W~~  219 (312)
T 3oox_A          183 --------------------ATGVRAGAHGDINTITLLLG----A------------------EEGGLEVLD-RDGQWLP  219 (312)
T ss_dssp             --------------------CC--CEEEECCCSSEEEEEC----C------------------TTSCEEEEC-TTSCEEE
T ss_pred             --------------------cCCcCccceecCceEEEEeE----c------------------CcCceEEEC-CCCcEEE
Confidence                                02279999999999999988    3                  356999987 6899999


Q ss_pred             ccCCCCcEEeehhHHHHHHhCCcccCcccceecCCC-CCCCCeeEEEeeecCCCCCeEecCCCCccccccCCCCCCCCCC
Q 013155          316 VKSSPESFIIQVGESADILSKGKLRSTLHCVCRPTK-LENLSRETFVVFLQPAWNKTFSISDYPTENCNLSGQGSGAPDE  394 (448)
Q Consensus       316 V~p~p~a~VVNIGD~lqi~SNG~~kSt~HRVv~p~~-~~~~~R~Sia~F~~P~~d~~I~~p~~~~~~~~~~~~~~~~~~~  394 (448)
                      |+|+||+|||||||+||+||||+||||+|||++|+. ....+|||+|||++|+.|++|+|++.|+.+             
T Consensus       220 V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-------------  286 (312)
T 3oox_A          220 INPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTA-------------  286 (312)
T ss_dssp             CCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCS-------------
T ss_pred             CCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCC-------------
Confidence            999999999999999999999999999999998642 135689999999999999999997766431             


Q ss_pred             CCCCcccchhhhHHhhhhcCCCCccccCCCCcHHHHHHHHHHhh
Q 013155          395 ENPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETTRQY  438 (448)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~ppl~~r~~~~~tf~ef~~~~~~~y  438 (448)
                                        ..|+.   |.+.+||+||+...++.+
T Consensus       287 ------------------~~p~~---y~~~~t~~eyl~~r~~~~  309 (312)
T 3oox_A          287 ------------------ENPDR---YPESITADEFLQQRLREI  309 (312)
T ss_dssp             ------------------SSCCS---CSSCEEHHHHHHHHHHHH
T ss_pred             ------------------CCccc---CCCCeeHHHHHHHHHHHh
Confidence                              23543   323799999999998754

PyMOL of 3oox

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		448
d1dcsa_		311	b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S	9e-07
d1odma_		329	b.82.2.1 (A:) Isopenicillin N synthase {Emericella	3e-05
d1gp6a_		349	b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr	8e-04

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 229 GQCIRSEKQTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESR 288
            + +  E             EA +       ++ +       +    P  + P+Y     
Sbjct: 130 SRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMV 189

Query: 289 GSDQGCPSPGGHTYLQILDPNKNKVRMVKSSPESFIIQVGESADILSKGKLRSTLHCVCR 348
              Q  P   G   + +          +   P++ ++  G  A +++ G++++  H V  
Sbjct: 190 TLIQQTPCANGF--VSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAA 247

Query: 349 PTKLE--NLSRETFVVFLQPAWNKTFS 373
           P + +    SR + V FL+P  + TFS
Sbjct: 248 PRRDQIAGSSRTSSVFFLRPNADFTFS 274

PyMOL of d1dcsa_

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329	Back information, alignment and structure

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		448
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	100.0
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	100.0
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	100.0
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	100.0
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	85.34

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-57  Score=454.89  Aligned_cols=291  Identities=17%  Similarity=0.182  Sum_probs=222.8

Q ss_pred             ccCcceeEeCccccccccCCCCCCchhhHHHHHHHHHHHHHhhCCCCcEEEEEecCCCcHHHHHHHHHHHHHHhcCCHHH
Q 013155            5 EILELYELPYSDLKLLCLDNTCSSSTEEIKRFETVRTSVMENLGPGGPGLLSITSVPNASIHRRNLLPLARKLALLNPDD   84 (448)
Q Consensus         5 ~~~~~~~id~sdl~~~~~~~~~~~~~~~~~~~~~~~~~I~~A~~~~G~G~l~~~gvp~~~el~~~l~~~a~~FF~LP~ee   84 (448)
                      +..+||+|||+.|.    ++       |...|++++++|.+||++||||+|++|||+  .++++++++++++||+||.|+
T Consensus        42 ~~~~IPvIDls~l~----~~-------d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~--~~li~~~~~~~~~FF~lP~ee  108 (349)
T d1gp6a_          42 DGPQVPTIDLKNIE----SD-------DEKIRENCIEELKKASLDWGVMHLINHGIP--ADLMERVKKAGEEFFSLSVEE  108 (349)
T ss_dssp             CSCCCCEEECTTTT----CS-------CHHHHHHHHHHHHHHHHHTSEEEEESCSCC--HHHHHHHHHHHHHHHTSCHHH
T ss_pred             CCCCcCeEEChhcC----CC-------CHHHHHHHHHHHHHHHHhCCEEEEEccCCC--HHHHHHHHHHHHHHHcCCHHH
Confidence            45689999999998    43       346788999999999999999999999998  999999999999999999999


Q ss_pred             HHhhcccC---CC-CccccCCCCCCcccccccccccccccccccccccCCCCCCCcCCcCCCCCCCCcccHHHHHHHHHH
Q 013155           85 RKRLLKEH---HL-GSDVSLKNPERNVSSFAMQLRYKQGLESTQCKFSSRADDNVKDQDLGQLPDNEFKNLGNMFKELGF  160 (448)
Q Consensus        85 K~k~~~~~---~~-G~~~~~~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WP~~~~p~fr~~~~~y~~  160 (448)
                      |+++....   .+ ||....      .......+.|.+....        ..........+.||+. +|+|++++.+|+.
T Consensus       109 K~k~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~--------~~~~~~~~~~n~wp~~-~~~f~e~~~~~~~  173 (349)
T d1gp6a_         109 KEKYANDQATGKIQGYGSKL------ANNASGQLEWEDYFFH--------LAYPEEKRDLSIWPKT-PSDYIEATSEYAK  173 (349)
T ss_dssp             HGGGBCBGGGTBCSEEECCC------CCSTTCCCCSCEEEEE--------EEESGGGCCGGGSCCS-STTHHHHHHHHHH
T ss_pred             HhhhhcccccCCcccccccc------ccccccccchhhhhcc--------cccccccccccccccc-cchHHHHHHHHHH
Confidence            99997542   11 121000      0000111222211100        0000112345789975 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC--chhHHHHhh--cCcCceeeecccCCCCchHHHhhhcccCCCCCCCCCCCCCCcccccccc
Q 013155          161 CMIELGLCLARICDKAIG--GQELEQSLL--ESSVAKGRLIHYHSTLDSVVLKEAGRKGRSSKKKGNPKSDQGQCIRSEK  236 (448)
Q Consensus       161 ~m~~l~~~Ll~~la~~L~--~~~l~~~~~--~~~~~~lRllhY~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (448)
                      +|.+|+..|+++++++||  .++|.+.+.  +...+.+|++||+|....                               
T Consensus       174 ~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~-------------------------------  222 (349)
T d1gp6a_         174 CLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP-------------------------------  222 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSST-------------------------------
T ss_pred             HHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccch-------------------------------
Confidence            999999999999999997  567777663  234567898888764321                               


Q ss_pred             cccccCCCCCCCccCcCCCCCCccceecccCCceeeEeCcccccccCCCCCCCCCCCCCCCCCcccEEEEcCCCCcEEEc
Q 013155          237 QTECTNVDGDSDEAGISGTHSNLWQQWHYDYGVFTVLTDPFFILPYYSSESRGSDQGCPSPGGHTYLQILDPNKNKVRMV  316 (448)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~g~HtD~g~lTlL~q~~f~d~~~~~~~~~~~~~~p~p~g~~GLQV~~~~~G~Wi~V  316 (448)
                                         ...+|+++|||+|+||||+|    +                  .++||||+  ++|+|++|
T Consensus       223 -------------------~~~~g~~~HtD~g~lTlL~q----~------------------~~~GLqv~--~~g~W~~V  259 (349)
T d1gp6a_         223 -------------------ELALGVEAHTDVSALTFILH----N------------------MVPGLQLF--YEGKWVTA  259 (349)
T ss_dssp             -------------------TTCCSEEEECCCSSEEEEEE----C------------------SCCCEEEE--ETTEEEEC
T ss_pred             -------------------hhccccccCCCCcceEEEec----c------------------CCcceeee--cCCceEEc
Confidence                               14569999999999999988    3                  25599998  57999999


Q ss_pred             cCCCCcEEeehhHHHHHHhCCcccCcccceecCCCCCCCCeeEEEeeecCCCCCeE-ecCCCCccccccCCCCCCCCCCC
Q 013155          317 KSSPESFIIQVGESADILSKGKLRSTLHCVCRPTKLENLSRETFVVFLQPAWNKTF-SISDYPTENCNLSGQGSGAPDEE  395 (448)
Q Consensus       317 ~p~p~a~VVNIGD~lqi~SNG~~kSt~HRVv~p~~~~~~~R~Sia~F~~P~~d~~I-~~p~~~~~~~~~~~~~~~~~~~~  395 (448)
                      +|.+|+|||||||+||+||||+||||+|||+.|   .+.+|||+|||++|+.|++| +|++.|+.+              
T Consensus       260 ~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~---~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~--------------  322 (349)
T d1gp6a_         260 KCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN---KEKVRISWAVFCEPPKDKIVLKPLPEMVSV--------------  322 (349)
T ss_dssp             CCCTTCEEEEECHHHHHHTTTSSCCCCEEECCC---SSCCEEEEEEEEECCTTTCEECCCGGGCCS--------------
T ss_pred             cCCCCCeeeeHHhHHHHHhCCCccCcCccccCC---CCCCeEEEEEEecCCCcceeecCCHHHcCC--------------
Confidence            999999999999999999999999999999984   45789999999999999876 775555321              


Q ss_pred             CCCcccchhhhHHhhhhcCCCCccccCCCCcHHHHHHHHH
Q 013155          396 NPPVKLGANKLAEAIQKMIPPLSSRLNDGMTFAEFSHETT  435 (448)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~ppl~~r~~~~~tf~ef~~~~~  435 (448)
                                       ..|+.    |+.|||+||++..+
T Consensus       323 -----------------~~p~~----y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         323 -----------------ESPAK----FPPRTFAQHIEHKL  341 (349)
T ss_dssp             -----------------SSCCS----SCCEEHHHHHHHHH
T ss_pred             -----------------CCCCC----CCCccHHHHHHHHH
Confidence                             23442    46699999999876

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure