BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013156
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
F + Q+ + S V+++GLGG+G A+ DFD VS+S+L R + + A
Sbjct: 21 FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA 80
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
VG PK + + I P I L D + +++ H D VLDC DN+ + L
Sbjct: 81 TVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEH-DLVLDCTDNVAVRNQLN 139
Query: 194 AACVRRGLKVLCATGAGAR 212
A C KV +GA R
Sbjct: 140 AGCF--AAKVPLVSGAAIR 156
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
++ QQK+ S V++IGLGG+G+ AA D D V +S+L R + T
Sbjct: 18 IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTE 77
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
D+ PK+ ++ + + P+ + A + ++ ++ D VLDC DN+ T+ +
Sbjct: 78 DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEIN 136
Query: 194 AACVRRGLKVLCATGAG 210
AACV ++ A+ G
Sbjct: 137 AACVALNTPLITASAVG 153
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
++ QQK+ S V++IGLGG+G+ AA D D V +S+L R + T
Sbjct: 20 IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTE 79
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
D+ PK+ ++ + + P+ + A + ++ ++ D VLDC DN+ T+ +
Sbjct: 80 DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEIN 138
Query: 194 AACVRRGLKVLCATGAG 210
AACV ++ A+ G
Sbjct: 139 AACVALNTPLITASAVG 155
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSH-----AAAMXXXXXXXXXXXXDFD 117
V + I FG++ Q+K++ S V ++G G +G A D D
Sbjct: 404 VNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDND 463
Query: 118 QVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC--HIDAKVLLYDASSEE---EIL 172
+ S+LNR + DVG K+ + ++ P+ I+AK+ +EE +
Sbjct: 464 SIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSF 523
Query: 173 SGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRI--RVADLRESTNDP 230
DFV + +DN+D + + CV +L + G + + I R+ + S+ DP
Sbjct: 524 WESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDP 583
Query: 231 LSRAV 235
+++
Sbjct: 584 PEKSI 588
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 61 EVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVS 120
E+ +R + G E+ K+ S V+++GL G+G A D + V
Sbjct: 4 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 121 VSSLNRHAVATRADVG 136
++ L+ T D+G
Sbjct: 64 LADLSTQFFLTEKDIG 79
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 79 QQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTP 138
Q K+ + VV++G GG+G+H + + D DQ+ ++L R + + DVG
Sbjct: 110 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 169
Query: 139 KALCLKK 145
K +K+
Sbjct: 170 KTEVIKR 176
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 77 ESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVG 136
E + V+G V+V+G GG+G D D + VS+LNR + + VG
Sbjct: 12 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVG 71
Query: 137 TPKALCLKKHFSSIFPECHIDA 158
KA K+ +P+ +I A
Sbjct: 72 RSKAQVAKESVLQFYPKANIVA 93
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 79 QQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTP 138
Q K+ + VV++G GG+G+H + + D DQ+ ++L R + + DVG
Sbjct: 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 172
Query: 139 KALCLKK 145
K +K+
Sbjct: 173 KTEVIKR 179
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 77 ESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVG 136
E + V+G V+V+G GG+G D D + VS+LNR + + VG
Sbjct: 10 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVG 69
Query: 137 TPKALCLKKHFSSIFPECHI 156
KA K+ +P+ +I
Sbjct: 70 RSKAQVAKESVLQFYPKANI 89
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 77 ESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVG 136
E + V+G V+V+G GG+G D D + VS+LNR + + VG
Sbjct: 30 ELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVG 89
Query: 137 TPKALCLKKHFSSIFPECHI 156
KA K+ +P+ +I
Sbjct: 90 RSKAQVAKESVLQFYPKANI 109
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 131
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 132 LNDRVPNCNV 141
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 414 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 473
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 474 LNDRVPNCNV 483
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 103 LNDRVPNCNV 112
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 103 LNDRVPNCNV 112
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 103 LNDRVPNCNV 112
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 40 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 100 LNDRVPNCNV 109
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 102
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 103 LNDRVPNCNV 112
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
V+VIG GG+G D D + VS+LNR + D+G PKA +
Sbjct: 53 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 112
Query: 147 FSSIFPECHI 156
+ P C++
Sbjct: 113 LNDRVPNCNV 122
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 71 IQFFGVESQQKVSGSYVVVIGLGGVGSH-----AAAMXXXXXXXXXXXXDFDQVSVSSLN 125
I FG E Q+K++ ++G G +G A D D + S+LN
Sbjct: 403 IAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLN 462
Query: 126 RHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD--ASSEEEILSGHPDF----- 178
R + DVG K+ C S + P + K+ Y E E + G F
Sbjct: 463 RQFLFRPRDVGKLKSECASTAVSIMNP--SLTGKITSYQERVGPESEGIFGDEFFEKLSL 520
Query: 179 VLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRE---STNDPLSRA 234
V + +DN++ ++ + CV +L + G + + T++ V L E S+ DP ++
Sbjct: 521 VTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGN-TQVVVPHLTESYGSSQDPPEKS 578
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 68 TRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRH 127
+R + G E+ +++S S V++IG G+G A D + L+
Sbjct: 10 SRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQ 69
Query: 128 AVATRADVGTPKA 140
T D+G P+A
Sbjct: 70 YFLTEDDIGVPRA 82
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Query: 64 AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSS 123
A Q R I+ +G+E+Q+++ S V+++GL G+G+ A D +QV+
Sbjct: 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPED 75
Query: 124 LNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCI 183
+ VG +A + ++ P +D KV D + E D V
Sbjct: 76 PGAQFLIRTGSVGRNRAEASLERAQNLNP--MVDVKVDTEDIEKKPESFFTQFDAVCLTC 133
Query: 184 DNIDTKVALLAACVRRGLKVL 204
+ D V + C + +K
Sbjct: 134 CSRDVIVKVDQICHKNSIKFF 154
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 44 PNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHA 99
PNC T +P L +L DE +L R + V S Q VSGS GL GV A
Sbjct: 127 PNCTTMAAMPVLKVLHDEA---RLVRLV----VSSYQAVSGS-----GLAGVAELA 170
>pdb|3IC5|A Chain A, N-Terminal Domain Of Putative Saccharopine Dehydrogenase
From Ruegeria Pomeroyi.
pdb|3IC5|B Chain B, N-Terminal Domain Of Putative Saccharopine Dehydrogenase
From Ruegeria Pomeroyi
Length = 118
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 87 VVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA-----DVGTPKAL 141
+ V+G G +G AA+ D D +++ LNR VAT+ + G KAL
Sbjct: 8 ICVVGAGKIGQXIAALLKTSSNYSVTVADHDLAALAVLNRXGVATKQVDAKDEAGLAKAL 67
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 44 PNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHA 99
PNC T +P L +L DE +L R + V S Q VSGS GL GV A
Sbjct: 145 PNCTTMAAMPVLKVLHDEA---RLVRLV----VSSYQAVSGS-----GLAGVAELA 188
>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
Length = 375
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 333 HQRLTEHEESLYGTAKEVQVDVEEV---MYVAKELWHG-RSAWEHSAKDVGRGMWRSVN 387
++ L + E+ + E++ +VE+ + +EL +G + AW HS + +GR W+S++
Sbjct: 28 YRELGKSEQEIKRRVNEIRWEVEQTGTYRHTYEELSYGAKMAWRHSNRCIGRLFWQSLH 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,501,810
Number of Sequences: 62578
Number of extensions: 498181
Number of successful extensions: 1330
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 35
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)