Query 013156
Match_columns 448
No_of_seqs 396 out of 2091
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 00:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2018 Predicted dinucleotide 100.0 8E-101 2E-105 740.7 35.9 413 3-440 2-420 (430)
2 COG1179 Dinucleotide-utilizing 100.0 1.2E-58 2.5E-63 437.7 22.2 248 61-316 7-260 (263)
3 PRK15116 sulfur acceptor prote 100.0 6E-53 1.3E-57 413.5 26.7 252 57-314 5-263 (268)
4 cd00755 YgdL_like Family of ac 100.0 1.9E-52 4.2E-57 402.9 23.8 231 74-308 1-231 (231)
5 PRK08223 hypothetical protein; 100.0 5.8E-47 1.2E-51 373.0 19.6 258 63-363 6-283 (287)
6 PRK07411 hypothetical protein; 100.0 1.8E-44 4E-49 372.6 21.7 214 55-315 9-224 (390)
7 PRK05690 molybdopterin biosynt 100.0 3.3E-44 7.2E-49 349.3 22.1 211 56-315 4-217 (245)
8 PRK08328 hypothetical protein; 100.0 1.2E-43 2.6E-48 342.6 21.6 207 57-315 2-209 (231)
9 PRK05597 molybdopterin biosynt 100.0 8.6E-44 1.9E-48 363.6 21.2 205 65-314 7-213 (355)
10 PRK05600 thiamine biosynthesis 100.0 2.6E-43 5.6E-48 361.3 22.3 214 54-314 11-229 (370)
11 PRK07878 molybdopterin biosynt 100.0 4.7E-43 1E-47 362.6 23.2 212 56-314 14-231 (392)
12 TIGR02356 adenyl_thiF thiazole 100.0 8.6E-43 1.9E-47 330.1 18.3 199 66-311 1-202 (202)
13 TIGR02355 moeB molybdopterin s 100.0 1.6E-42 3.5E-47 336.3 20.6 203 65-314 3-208 (240)
14 KOG2017 Molybdopterin synthase 100.0 1.4E-43 3E-48 347.5 12.6 217 52-315 34-252 (427)
15 cd00757 ThiF_MoeB_HesA_family 100.0 7.2E-42 1.6E-46 329.5 19.7 204 66-315 1-206 (228)
16 PRK07688 thiamine/molybdopteri 100.0 2E-41 4.3E-46 343.8 19.9 205 64-315 2-210 (339)
17 PRK12475 thiamine/molybdopteri 100.0 2.4E-41 5.3E-46 343.1 20.2 205 64-315 2-210 (338)
18 PRK08762 molybdopterin biosynt 100.0 9.2E-40 2E-44 336.5 22.8 212 57-315 108-325 (376)
19 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.1E-39 2.4E-44 307.8 19.0 144 65-210 2-145 (197)
20 cd01485 E1-1_like Ubiquitin ac 100.0 1.7E-38 3.6E-43 300.0 18.2 143 66-209 1-147 (198)
21 PRK07877 hypothetical protein; 100.0 4.3E-37 9.3E-42 336.0 25.0 274 57-371 80-391 (722)
22 COG0476 ThiF Dinucleotide-util 100.0 4.1E-37 8.8E-42 300.8 19.6 213 57-315 3-218 (254)
23 PRK08644 thiamine biosynthesis 100.0 1.4E-36 3.1E-41 289.6 22.4 197 67-315 11-210 (212)
24 PRK14851 hypothetical protein; 100.0 6.8E-36 1.5E-40 325.7 26.9 239 58-321 17-263 (679)
25 PRK14852 hypothetical protein; 100.0 3.1E-36 6.7E-41 333.2 21.5 237 57-330 305-560 (989)
26 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.1E-35 4.5E-40 292.2 18.5 141 66-211 1-141 (286)
27 cd01488 Uba3_RUB Ubiquitin act 100.0 1.5E-34 3.3E-39 286.4 17.9 227 86-315 1-259 (291)
28 TIGR03603 cyclo_dehy_ocin bact 100.0 2.6E-34 5.7E-39 289.2 17.4 204 56-315 46-262 (318)
29 TIGR02354 thiF_fam2 thiamine b 100.0 1.6E-32 3.4E-37 259.6 20.6 190 72-311 9-200 (200)
30 TIGR01408 Ube1 ubiquitin-activ 100.0 1.6E-32 3.5E-37 309.5 23.2 203 64-315 399-610 (1008)
31 cd01484 E1-2_like Ubiquitin ac 100.0 8.9E-32 1.9E-36 259.8 22.1 212 86-364 1-214 (234)
32 cd01487 E1_ThiF_like E1_ThiF_l 100.0 3.1E-32 6.7E-37 252.3 17.7 171 86-308 1-174 (174)
33 TIGR01381 E1_like_apg7 E1-like 100.0 5E-32 1.1E-36 288.7 20.9 208 73-315 327-563 (664)
34 cd01489 Uba2_SUMO Ubiquitin ac 100.0 5.1E-31 1.1E-35 263.9 19.8 128 86-214 1-129 (312)
35 KOG2013 SMT3/SUMO-activating c 100.0 1.3E-31 2.7E-36 272.2 15.3 314 77-439 5-355 (603)
36 PF00899 ThiF: ThiF family; I 100.0 1E-30 2.2E-35 231.9 14.4 128 83-211 1-128 (135)
37 cd01490 Ube1_repeat2 Ubiquitin 100.0 7.1E-30 1.5E-34 264.8 19.2 181 86-315 1-190 (435)
38 cd01493 APPBP1_RUB Ubiquitin a 100.0 5.8E-30 1.3E-34 266.2 15.0 146 65-211 1-148 (425)
39 cd01486 Apg7 Apg7 is an E1-lik 100.0 2.2E-28 4.8E-33 241.6 19.2 121 86-207 1-140 (307)
40 cd01483 E1_enzyme_family Super 100.0 8.4E-29 1.8E-33 221.4 14.2 127 86-213 1-127 (143)
41 KOG2014 SMT3/SUMO-activating c 100.0 2.6E-29 5.6E-34 243.6 11.4 153 55-211 4-156 (331)
42 TIGR01408 Ube1 ubiquitin-activ 100.0 7E-29 1.5E-33 280.2 15.6 143 64-211 4-148 (1008)
43 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.3E-27 4.9E-32 229.9 18.9 196 82-313 9-217 (244)
44 PTZ00245 ubiquitin activating 99.9 3.8E-27 8.3E-32 225.6 13.0 120 59-188 3-122 (287)
45 PRK06153 hypothetical protein; 99.9 5.8E-27 1.2E-31 238.1 13.8 128 77-208 169-299 (393)
46 KOG2015 NEDD8-activating compl 99.9 3.9E-26 8.4E-31 222.9 16.0 152 75-229 31-192 (422)
47 KOG2336 Molybdopterin biosynth 99.9 1.2E-25 2.5E-30 216.0 14.4 219 57-314 52-285 (422)
48 KOG2012 Ubiquitin activating e 99.9 1.4E-24 3.1E-29 231.9 12.0 149 65-214 411-568 (1013)
49 KOG2012 Ubiquitin activating e 99.9 1E-21 2.2E-26 210.3 13.5 150 57-211 10-159 (1013)
50 KOG2016 NEDD8-activating compl 99.8 2.1E-19 4.5E-24 182.0 8.1 146 65-211 8-155 (523)
51 TIGR03693 ocin_ThiF_like putat 99.8 1.6E-17 3.4E-22 176.6 16.3 214 57-336 98-326 (637)
52 KOG2337 Ubiquitin activating E 99.6 2.5E-14 5.3E-19 147.7 12.9 133 74-207 330-482 (669)
53 COG4015 Predicted dinucleotide 98.8 4.5E-08 9.8E-13 88.4 11.1 142 84-233 18-165 (217)
54 PRK06719 precorrin-2 dehydroge 98.1 4.7E-05 1E-09 69.6 12.3 126 81-242 10-143 (157)
55 PRK06718 precorrin-2 dehydroge 98.1 4.1E-05 9E-10 72.8 12.3 93 81-205 7-99 (202)
56 TIGR01470 cysG_Nterm siroheme 98.1 3.8E-05 8.2E-10 73.2 11.8 94 82-206 7-100 (205)
57 PRK12549 shikimate 5-dehydroge 98.0 2E-05 4.2E-10 78.8 9.4 77 82-184 125-201 (284)
58 COG1748 LYS9 Saccharopine dehy 98.0 5.5E-05 1.2E-09 78.4 11.0 97 85-207 2-99 (389)
59 PF01488 Shikimate_DH: Shikima 97.9 4.9E-05 1.1E-09 67.5 9.0 80 80-187 8-87 (135)
60 PF13241 NAD_binding_7: Putati 97.7 8.3E-05 1.8E-09 63.0 6.5 88 81-206 4-91 (103)
61 PF05237 MoeZ_MoeB: MoeZ/MoeB 97.7 1.3E-05 2.9E-10 65.5 1.5 47 256-314 2-48 (84)
62 PRK05562 precorrin-2 dehydroge 97.7 0.0005 1.1E-08 66.4 12.3 96 81-207 22-117 (223)
63 COG1648 CysG Siroheme synthase 97.4 0.00067 1.5E-08 65.0 8.7 96 81-207 9-104 (210)
64 PRK14027 quinate/shikimate deh 97.4 0.00071 1.5E-08 67.7 8.7 79 82-184 125-203 (283)
65 PF03435 Saccharop_dh: Sacchar 97.4 0.00054 1.2E-08 71.0 8.1 95 87-206 1-97 (386)
66 TIGR03882 cyclo_dehyd_2 bacter 97.3 0.00014 3E-09 68.7 2.8 56 74-129 95-160 (193)
67 PF01113 DapB_N: Dihydrodipico 97.2 0.005 1.1E-07 53.9 11.0 94 86-207 2-98 (124)
68 PRK12548 shikimate 5-dehydroge 97.0 0.0035 7.6E-08 62.8 9.5 84 82-184 124-208 (289)
69 COG0373 HemA Glutamyl-tRNA red 97.0 0.0048 1E-07 64.6 10.8 77 81-188 175-251 (414)
70 TIGR01809 Shik-DH-AROM shikima 97.0 0.0023 5.1E-08 63.9 7.9 78 82-185 123-200 (282)
71 PRK10637 cysG siroheme synthas 96.9 0.0092 2E-07 63.6 12.3 132 81-243 9-147 (457)
72 COG0169 AroE Shikimate 5-dehyd 96.8 0.0036 7.7E-08 62.6 7.7 76 83-185 125-200 (283)
73 PRK13940 glutamyl-tRNA reducta 96.7 0.0035 7.7E-08 66.0 7.3 77 81-187 178-254 (414)
74 PRK14106 murD UDP-N-acetylmura 96.7 0.0088 1.9E-07 63.1 10.2 97 82-207 3-99 (450)
75 TIGR01035 hemA glutamyl-tRNA r 96.7 0.011 2.5E-07 62.2 10.8 37 81-117 177-213 (417)
76 PRK12749 quinate/shikimate deh 96.7 0.007 1.5E-07 60.7 8.6 83 82-184 122-205 (288)
77 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.017 3.8E-07 58.4 11.1 84 82-196 176-259 (311)
78 cd05311 NAD_bind_2_malic_enz N 96.6 0.0046 1E-07 59.8 6.6 38 81-118 22-61 (226)
79 PRK00258 aroE shikimate 5-dehy 96.6 0.0062 1.4E-07 60.6 7.7 76 81-185 120-195 (278)
80 cd01075 NAD_bind_Leu_Phe_Val_D 96.6 0.012 2.7E-07 55.7 9.4 36 81-117 25-60 (200)
81 COG0569 TrkA K+ transport syst 96.5 0.022 4.8E-07 55.0 10.8 98 85-208 1-100 (225)
82 PF03446 NAD_binding_2: NAD bi 96.2 0.0093 2E-07 54.4 5.6 113 85-211 2-123 (163)
83 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.035 7.6E-07 53.8 9.5 123 80-241 27-150 (227)
84 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.015 3.2E-07 53.8 6.6 35 81-116 41-76 (168)
85 PRK00045 hemA glutamyl-tRNA re 96.0 0.036 7.9E-07 58.5 9.8 36 82-117 180-215 (423)
86 cd00762 NAD_bind_malic_enz NAD 96.0 0.089 1.9E-06 51.8 11.7 108 80-208 21-141 (254)
87 cd01078 NAD_bind_H4MPT_DH NADP 95.9 0.042 9.2E-07 51.3 9.0 84 81-187 25-109 (194)
88 cd01065 NAD_bind_Shikimate_DH 95.8 0.02 4.4E-07 51.0 6.1 36 82-117 17-52 (155)
89 PF01210 NAD_Gly3P_dh_N: NAD-d 95.8 0.049 1.1E-06 49.4 8.5 101 86-207 1-103 (157)
90 cd05312 NAD_bind_1_malic_enz N 95.8 0.074 1.6E-06 53.1 10.3 107 80-208 21-140 (279)
91 PF03949 Malic_M: Malic enzyme 95.7 0.08 1.7E-06 52.2 10.1 107 81-208 22-141 (255)
92 cd05291 HicDH_like L-2-hydroxy 95.7 0.028 6.2E-07 56.6 7.2 33 85-117 1-34 (306)
93 COG1086 Predicted nucleoside-d 95.7 0.19 4.1E-06 54.5 13.5 110 77-205 243-372 (588)
94 PF03807 F420_oxidored: NADP o 95.6 0.048 1E-06 44.7 7.2 90 86-207 1-94 (96)
95 PRK12550 shikimate 5-dehydroge 95.6 0.031 6.6E-07 55.7 7.0 111 84-207 122-239 (272)
96 PF13460 NAD_binding_10: NADH( 95.5 0.22 4.7E-06 45.3 11.7 98 87-215 1-105 (183)
97 PLN02819 lysine-ketoglutarate 95.4 0.046 9.9E-07 63.6 8.5 113 82-207 567-679 (1042)
98 PF02737 3HCDH_N: 3-hydroxyacy 95.4 0.02 4.4E-07 53.3 4.7 98 86-198 1-102 (180)
99 PRK09242 tropinone reductase; 95.4 0.34 7.4E-06 46.6 13.5 84 81-184 6-97 (257)
100 TIGR01202 bchC 2-desacetyl-2-h 95.4 0.061 1.3E-06 53.9 8.4 88 83-206 144-231 (308)
101 cd05211 NAD_bind_Glu_Leu_Phe_V 95.4 0.058 1.3E-06 51.9 7.8 109 81-210 20-129 (217)
102 TIGR02853 spore_dpaA dipicolin 95.3 0.051 1.1E-06 54.5 7.5 36 81-117 148-183 (287)
103 cd05191 NAD_bind_amino_acid_DH 95.3 0.03 6.5E-07 45.6 4.8 38 80-117 19-56 (86)
104 PRK00048 dihydrodipicolinate r 95.2 0.17 3.8E-06 49.7 10.8 87 85-206 2-90 (257)
105 PRK05476 S-adenosyl-L-homocyst 95.2 0.058 1.3E-06 57.0 7.7 37 81-118 209-245 (425)
106 PLN00203 glutamyl-tRNA reducta 95.2 0.066 1.4E-06 58.0 8.3 78 82-187 264-341 (519)
107 PRK06392 homoserine dehydrogen 95.2 0.16 3.5E-06 51.9 10.7 104 86-207 2-116 (326)
108 PRK09599 6-phosphogluconate de 95.2 0.083 1.8E-06 53.0 8.5 117 86-211 2-123 (301)
109 TIGR00507 aroE shikimate 5-deh 95.1 0.13 2.9E-06 50.8 9.7 35 82-117 115-149 (270)
110 PF02719 Polysacc_synt_2: Poly 95.1 0.13 2.8E-06 51.8 9.6 41 87-127 1-42 (293)
111 PRK07819 3-hydroxybutyryl-CoA 95.1 0.051 1.1E-06 54.3 6.7 99 85-198 6-108 (286)
112 PRK06270 homoserine dehydrogen 95.0 0.17 3.6E-06 52.0 10.5 107 85-206 3-124 (341)
113 TIGR00872 gnd_rel 6-phosphoglu 95.0 0.076 1.6E-06 53.3 7.7 117 86-211 2-122 (298)
114 PRK08374 homoserine dehydrogen 95.0 0.19 4.1E-06 51.6 10.5 109 85-207 3-122 (336)
115 PRK14619 NAD(P)H-dependent gly 94.9 0.15 3.2E-06 51.4 9.6 76 84-207 4-82 (308)
116 PRK06197 short chain dehydroge 94.9 0.12 2.6E-06 51.5 8.8 43 74-117 6-49 (306)
117 PRK09496 trkA potassium transp 94.9 0.31 6.8E-06 51.3 12.3 99 82-206 229-328 (453)
118 PRK01438 murD UDP-N-acetylmura 94.8 0.089 1.9E-06 56.1 8.2 35 82-117 14-48 (480)
119 PRK14192 bifunctional 5,10-met 94.8 0.069 1.5E-06 53.5 6.7 34 81-115 156-190 (283)
120 PRK04148 hypothetical protein; 94.7 0.32 7E-06 43.4 10.1 96 83-209 16-111 (134)
121 PF02558 ApbA: Ketopantoate re 94.7 0.069 1.5E-06 47.5 5.9 89 87-198 1-90 (151)
122 PRK08618 ornithine cyclodeamin 94.7 0.17 3.6E-06 51.6 9.4 96 81-206 124-220 (325)
123 PRK02705 murD UDP-N-acetylmura 94.7 0.23 4.9E-06 52.6 10.6 33 85-118 1-33 (459)
124 PRK11908 NAD-dependent epimera 94.6 0.42 9.2E-06 48.4 12.2 101 85-212 2-122 (347)
125 cd00401 AdoHcyase S-adenosyl-L 94.6 0.24 5.1E-06 52.3 10.4 36 82-118 200-235 (413)
126 PF01118 Semialdhyde_dh: Semia 94.6 0.38 8.3E-06 41.5 10.1 97 86-209 1-99 (121)
127 PRK00676 hemA glutamyl-tRNA re 94.6 0.069 1.5E-06 54.8 6.1 33 81-113 171-203 (338)
128 KOG0022 Alcohol dehydrogenase, 94.5 0.24 5.2E-06 50.2 9.7 103 83-209 192-297 (375)
129 PRK13529 malate dehydrogenase; 94.5 0.21 4.6E-06 54.3 10.0 131 63-208 256-417 (563)
130 PRK12490 6-phosphogluconate de 94.5 0.15 3.2E-06 51.2 8.4 117 86-211 2-123 (299)
131 TIGR00518 alaDH alanine dehydr 94.5 0.1 2.2E-06 54.2 7.4 35 82-117 165-199 (370)
132 PRK07066 3-hydroxybutyryl-CoA 94.4 0.19 4.1E-06 51.3 9.0 108 85-208 8-119 (321)
133 PLN03129 NADP-dependent malic 94.4 0.25 5.3E-06 54.0 10.2 106 80-208 317-436 (581)
134 cd05313 NAD_bind_2_Glu_DH NAD( 94.4 0.47 1E-05 46.9 11.2 38 80-117 34-71 (254)
135 PRK13403 ketol-acid reductoiso 94.3 0.24 5.2E-06 50.5 9.4 97 78-210 10-109 (335)
136 COG1062 AdhC Zn-dependent alco 94.3 0.35 7.6E-06 49.4 10.5 102 83-208 185-287 (366)
137 cd00300 LDH_like L-lactate deh 94.3 0.18 3.9E-06 50.8 8.5 72 87-185 1-76 (300)
138 PF02254 TrkA_N: TrkA-N domain 94.3 0.52 1.1E-05 39.8 10.2 91 87-205 1-94 (116)
139 PRK06141 ornithine cyclodeamin 94.3 0.21 4.6E-06 50.6 9.1 80 79-186 120-200 (314)
140 PTZ00317 NADP-dependent malic 94.3 0.45 9.6E-06 51.8 11.8 128 63-208 258-416 (559)
141 PRK06522 2-dehydropantoate 2-r 94.3 0.19 4E-06 49.9 8.5 95 86-205 2-98 (304)
142 PRK00094 gpsA NAD(P)H-dependen 94.1 0.3 6.6E-06 48.9 9.7 101 86-207 3-105 (325)
143 TIGR00873 gnd 6-phosphoglucona 94.1 0.22 4.8E-06 53.4 9.0 122 86-211 1-127 (467)
144 PRK05808 3-hydroxybutyryl-CoA 94.1 0.099 2.1E-06 51.8 6.0 33 85-118 4-36 (282)
145 PRK07062 short chain dehydroge 94.1 0.38 8.3E-06 46.4 10.1 62 82-163 6-68 (265)
146 PRK09496 trkA potassium transp 94.1 0.48 1E-05 49.9 11.5 92 86-205 2-96 (453)
147 PTZ00117 malate dehydrogenase; 94.1 0.072 1.6E-06 54.1 5.1 36 82-117 3-38 (319)
148 COG1063 Tdh Threonine dehydrog 94.1 0.21 4.5E-06 51.4 8.5 104 82-208 167-271 (350)
149 PRK08293 3-hydroxybutyryl-CoA 94.1 0.2 4.4E-06 49.8 8.2 33 85-118 4-36 (287)
150 PTZ00142 6-phosphogluconate de 94.1 0.19 4.2E-06 53.9 8.5 121 85-211 2-130 (470)
151 PRK08251 short chain dehydroge 94.0 0.9 1.9E-05 43.2 12.4 80 84-183 2-89 (248)
152 PRK14031 glutamate dehydrogena 94.0 0.4 8.6E-06 51.0 10.6 37 81-117 225-261 (444)
153 PRK07634 pyrroline-5-carboxyla 94.0 0.44 9.5E-06 45.9 10.2 93 83-207 3-99 (245)
154 PRK08306 dipicolinate synthase 94.0 0.12 2.6E-06 52.0 6.5 36 81-117 149-184 (296)
155 PRK13301 putative L-aspartate 94.0 0.28 6E-06 48.7 8.8 115 85-209 3-123 (267)
156 PRK10537 voltage-gated potassi 94.0 0.28 6E-06 51.5 9.4 41 79-120 235-275 (393)
157 PRK07523 gluconate 5-dehydroge 94.0 0.66 1.4E-05 44.5 11.5 36 81-117 7-43 (255)
158 PRK12826 3-ketoacyl-(acyl-carr 94.0 0.21 4.7E-06 47.3 7.9 36 81-117 3-39 (251)
159 PF00056 Ldh_1_N: lactate/mala 94.0 0.093 2E-06 46.9 5.1 76 86-185 2-79 (141)
160 PLN03209 translocon at the inn 94.0 0.75 1.6E-05 50.5 12.8 111 80-211 76-211 (576)
161 PRK08339 short chain dehydroge 93.9 0.89 1.9E-05 44.3 12.4 35 82-117 6-41 (263)
162 PRK09260 3-hydroxybutyryl-CoA 93.9 0.067 1.5E-06 53.3 4.4 34 85-119 2-35 (288)
163 PRK03659 glutathione-regulated 93.9 0.38 8.2E-06 53.2 10.6 94 84-205 400-496 (601)
164 PRK07063 short chain dehydroge 93.8 0.41 8.9E-06 46.1 9.7 63 81-163 4-67 (260)
165 PRK07831 short chain dehydroge 93.8 0.4 8.8E-06 46.3 9.6 35 81-116 14-50 (262)
166 PF00070 Pyr_redox: Pyridine n 93.8 0.13 2.8E-06 40.9 5.1 54 86-151 1-54 (80)
167 PRK09880 L-idonate 5-dehydroge 93.8 0.65 1.4E-05 47.0 11.5 96 82-205 168-265 (343)
168 PLN02520 bifunctional 3-dehydr 93.7 0.16 3.4E-06 55.4 7.1 35 82-117 377-411 (529)
169 PRK03562 glutathione-regulated 93.7 0.33 7.2E-06 53.9 9.8 89 84-200 400-489 (621)
170 PRK07340 ornithine cyclodeamin 93.7 0.33 7.1E-06 49.0 8.9 79 80-187 121-200 (304)
171 PRK01710 murD UDP-N-acetylmura 93.7 0.35 7.6E-06 51.5 9.6 38 80-118 10-47 (458)
172 PLN02240 UDP-glucose 4-epimera 93.6 0.81 1.8E-05 46.1 11.9 33 82-115 3-36 (352)
173 PTZ00082 L-lactate dehydrogena 93.6 0.099 2.1E-06 53.3 5.1 37 82-118 4-40 (321)
174 TIGR03589 PseB UDP-N-acetylglu 93.6 1 2.2E-05 45.5 12.4 36 82-117 2-39 (324)
175 PRK09310 aroDE bifunctional 3- 93.6 0.4 8.7E-06 51.5 9.9 35 82-117 330-364 (477)
176 PLN02350 phosphogluconate dehy 93.6 0.53 1.2E-05 50.8 10.8 122 85-211 7-136 (493)
177 PRK13304 L-aspartate dehydroge 93.6 0.18 3.9E-06 49.9 6.7 32 86-117 3-36 (265)
178 COG0281 SfcA Malic enzyme [Ene 93.5 0.27 5.8E-06 51.5 8.1 118 65-208 162-300 (432)
179 PRK05479 ketol-acid reductoiso 93.5 0.39 8.4E-06 49.2 9.2 36 79-115 12-47 (330)
180 PRK15469 ghrA bifunctional gly 93.5 0.31 6.8E-06 49.5 8.5 78 80-194 132-210 (312)
181 cd08230 glucose_DH Glucose deh 93.5 0.41 8.9E-06 48.7 9.5 97 83-205 172-268 (355)
182 TIGR02992 ectoine_eutC ectoine 93.5 0.42 9.1E-06 48.7 9.5 78 83-187 128-206 (326)
183 PRK05653 fabG 3-ketoacyl-(acyl 93.5 1 2.2E-05 42.4 11.5 35 82-117 3-38 (246)
184 COG0111 SerA Phosphoglycerate 93.4 1.1 2.4E-05 45.8 12.2 161 81-315 139-310 (324)
185 PRK14620 NAD(P)H-dependent gly 93.4 0.41 8.9E-06 48.4 9.2 100 86-205 2-104 (326)
186 PF03447 NAD_binding_3: Homose 93.4 0.33 7.1E-06 41.5 7.2 85 91-207 1-90 (117)
187 KOG4169 15-hydroxyprostaglandi 93.4 0.28 6E-06 47.6 7.3 81 82-183 3-91 (261)
188 TIGR00936 ahcY adenosylhomocys 93.3 0.2 4.3E-06 52.8 6.9 36 82-118 193-228 (406)
189 PRK06523 short chain dehydroge 93.3 0.6 1.3E-05 44.9 9.8 37 81-118 6-43 (260)
190 PRK00066 ldh L-lactate dehydro 93.2 0.11 2.4E-06 52.7 4.8 34 83-116 5-39 (315)
191 PRK11880 pyrroline-5-carboxyla 93.2 0.37 8.1E-06 47.1 8.3 90 85-207 3-94 (267)
192 TIGR02622 CDP_4_6_dhtase CDP-g 93.2 0.9 1.9E-05 46.1 11.3 35 82-117 2-37 (349)
193 PRK12862 malic enzyme; Reviewe 93.1 0.36 7.8E-06 54.8 9.0 101 80-208 189-292 (763)
194 PRK02472 murD UDP-N-acetylmura 93.0 0.44 9.5E-06 50.2 9.1 35 82-117 3-37 (447)
195 PLN02427 UDP-apiose/xylose syn 93.0 0.75 1.6E-05 47.4 10.6 37 80-116 10-47 (386)
196 PRK06567 putative bifunctional 92.9 0.44 9.6E-06 55.2 9.2 41 82-123 381-421 (1028)
197 PRK04308 murD UDP-N-acetylmura 92.8 0.61 1.3E-05 49.3 9.8 36 82-118 3-38 (445)
198 PRK12827 short chain dehydroge 92.8 1.8 3.9E-05 40.9 12.2 33 82-115 4-37 (249)
199 PLN02214 cinnamoyl-CoA reducta 92.8 1.6 3.4E-05 44.4 12.5 106 82-209 8-128 (342)
200 PLN02494 adenosylhomocysteinas 92.8 0.26 5.5E-06 52.7 6.8 36 82-118 252-287 (477)
201 PRK12769 putative oxidoreducta 92.7 0.65 1.4E-05 51.8 10.3 34 83-117 326-359 (654)
202 PTZ00345 glycerol-3-phosphate 92.7 0.49 1.1E-05 49.2 8.7 106 83-207 10-129 (365)
203 PRK13302 putative L-aspartate 92.7 0.23 5E-06 49.4 6.0 35 83-117 5-41 (271)
204 PLN02657 3,8-divinyl protochlo 92.7 1 2.2E-05 47.0 11.1 106 84-209 60-183 (390)
205 PRK09987 dTDP-4-dehydrorhamnos 92.6 0.46 1E-05 47.3 8.2 30 86-117 2-32 (299)
206 PRK08291 ectoine utilization p 92.6 0.7 1.5E-05 47.1 9.6 77 84-187 132-209 (330)
207 COG1064 AdhP Zn-dependent alco 92.6 0.96 2.1E-05 46.5 10.4 93 84-206 167-259 (339)
208 PRK05854 short chain dehydroge 92.6 0.56 1.2E-05 47.1 8.7 35 81-116 11-46 (313)
209 PRK07576 short chain dehydroge 92.5 0.49 1.1E-05 46.0 8.1 39 78-117 3-42 (264)
210 PF02826 2-Hacid_dh_C: D-isome 92.5 0.22 4.7E-06 46.2 5.2 84 79-198 31-115 (178)
211 PRK15181 Vi polysaccharide bio 92.5 1.7 3.7E-05 44.2 12.2 36 81-117 12-48 (348)
212 PRK08217 fabG 3-ketoacyl-(acyl 92.5 0.85 1.9E-05 43.2 9.5 35 82-117 3-38 (253)
213 TIGR01915 npdG NADPH-dependent 92.5 0.54 1.2E-05 44.9 8.0 95 86-206 2-100 (219)
214 PRK08229 2-dehydropantoate 2-r 92.4 0.84 1.8E-05 46.3 9.9 32 85-117 3-34 (341)
215 COG1250 FadB 3-hydroxyacyl-CoA 92.4 0.36 7.9E-06 48.9 7.1 97 85-201 4-109 (307)
216 KOG0069 Glyoxylate/hydroxypyru 92.4 0.53 1.1E-05 48.2 8.3 81 80-196 158-239 (336)
217 cd08239 THR_DH_like L-threonin 92.4 1.2 2.6E-05 44.6 11.0 35 83-117 163-197 (339)
218 TIGR03451 mycoS_dep_FDH mycoth 92.4 0.75 1.6E-05 46.8 9.6 35 83-117 176-210 (358)
219 PLN02206 UDP-glucuronate decar 92.4 1 2.2E-05 48.0 10.7 106 81-214 116-239 (442)
220 PF00208 ELFV_dehydrog: Glutam 92.3 0.15 3.2E-06 50.0 4.1 35 81-115 29-63 (244)
221 TIGR00715 precor6x_red precorr 92.3 1 2.3E-05 44.4 10.1 96 85-207 1-99 (256)
222 PRK07502 cyclohexadienyl dehyd 92.3 0.42 9.1E-06 48.0 7.5 34 84-117 6-40 (307)
223 COG1087 GalE UDP-glucose 4-epi 92.3 1 2.2E-05 45.5 9.9 122 86-221 2-131 (329)
224 PLN02740 Alcohol dehydrogenase 92.3 1.1 2.3E-05 46.3 10.6 35 83-117 198-232 (381)
225 PRK05867 short chain dehydroge 92.3 0.78 1.7E-05 44.0 9.0 34 82-116 7-41 (253)
226 PRK07680 late competence prote 92.2 1.7 3.6E-05 42.9 11.5 90 86-207 2-96 (273)
227 cd05290 LDH_3 A subgroup of L- 92.2 0.19 4E-06 51.0 4.7 31 86-116 1-32 (307)
228 TIGR01505 tartro_sem_red 2-hyd 92.1 0.79 1.7E-05 45.6 9.1 32 86-118 1-32 (291)
229 PF05368 NmrA: NmrA-like famil 92.1 2.3 4.9E-05 40.4 11.9 99 87-211 1-105 (233)
230 PRK12861 malic enzyme; Reviewe 92.1 0.58 1.3E-05 52.9 8.8 118 63-208 148-288 (764)
231 PRK12779 putative bifunctional 92.1 0.98 2.1E-05 52.6 10.9 97 83-186 305-403 (944)
232 PRK07232 bifunctional malic en 92.0 0.6 1.3E-05 52.8 8.9 101 80-208 181-284 (752)
233 PRK06194 hypothetical protein; 92.0 0.67 1.5E-05 45.3 8.4 36 81-117 3-39 (287)
234 PRK06349 homoserine dehydrogen 92.0 0.98 2.1E-05 47.8 10.1 90 84-206 3-103 (426)
235 COG1893 ApbA Ketopantoate redu 92.0 0.44 9.5E-06 48.3 7.1 29 85-114 1-29 (307)
236 CHL00194 ycf39 Ycf39; Provisio 92.0 1.7 3.7E-05 43.5 11.4 96 86-210 2-112 (317)
237 PRK06181 short chain dehydroge 91.9 1 2.3E-05 43.3 9.5 32 85-117 2-34 (263)
238 TIGR00036 dapB dihydrodipicoli 91.9 0.89 1.9E-05 45.0 9.1 95 86-208 3-100 (266)
239 PRK05872 short chain dehydroge 91.9 1.1 2.4E-05 44.4 9.9 36 81-117 6-42 (296)
240 PRK06928 pyrroline-5-carboxyla 91.8 1.7 3.6E-05 43.2 11.0 91 86-207 3-98 (277)
241 PRK15059 tartronate semialdehy 91.7 1.1 2.3E-05 45.0 9.6 111 86-211 2-122 (292)
242 PRK05875 short chain dehydroge 91.7 1.1 2.3E-05 43.6 9.3 36 81-117 4-40 (276)
243 PLN02477 glutamate dehydrogena 91.7 1.1 2.4E-05 47.3 9.9 37 81-117 203-239 (410)
244 PRK14030 glutamate dehydrogena 91.7 1.2 2.7E-05 47.4 10.3 37 81-117 225-261 (445)
245 PF00106 adh_short: short chai 91.7 0.74 1.6E-05 40.9 7.6 33 85-117 1-34 (167)
246 PLN02572 UDP-sulfoquinovose sy 91.6 2.4 5.2E-05 45.0 12.6 37 80-117 43-80 (442)
247 PRK08125 bifunctional UDP-gluc 91.6 2.1 4.5E-05 47.8 12.6 105 80-211 311-435 (660)
248 PF01408 GFO_IDH_MocA: Oxidore 91.6 0.39 8.5E-06 40.7 5.4 89 86-207 2-93 (120)
249 PRK11150 rfaD ADP-L-glycero-D- 91.6 0.68 1.5E-05 45.9 7.9 31 87-117 2-33 (308)
250 COG0240 GpsA Glycerol-3-phosph 91.6 0.51 1.1E-05 48.1 7.0 102 85-207 2-105 (329)
251 PRK10669 putative cation:proto 91.5 1 2.2E-05 49.3 9.8 34 84-118 417-450 (558)
252 PLN02852 ferredoxin-NADP+ redu 91.5 1.1 2.3E-05 48.5 9.8 96 83-186 25-125 (491)
253 PF10727 Rossmann-like: Rossma 91.5 0.42 9.1E-06 42.2 5.6 94 83-209 9-106 (127)
254 PRK06476 pyrroline-5-carboxyla 91.5 1.3 2.7E-05 43.4 9.6 90 86-207 2-93 (258)
255 PRK14618 NAD(P)H-dependent gly 91.5 0.9 2E-05 46.0 8.9 33 85-118 5-37 (328)
256 PRK07478 short chain dehydroge 91.5 1 2.2E-05 43.1 8.9 36 81-117 3-39 (254)
257 PRK12384 sorbitol-6-phosphate 91.5 1.6 3.4E-05 41.9 10.1 33 84-117 2-35 (259)
258 PTZ00079 NADP-specific glutama 91.4 2.6 5.7E-05 44.9 12.4 37 81-117 234-270 (454)
259 PRK09186 flagellin modificatio 91.4 1.1 2.3E-05 42.9 8.9 33 82-115 2-35 (256)
260 PRK05708 2-dehydropantoate 2-r 91.4 0.25 5.3E-06 49.8 4.6 33 84-117 2-34 (305)
261 PRK11559 garR tartronate semia 91.4 0.88 1.9E-05 45.3 8.6 33 85-118 3-35 (296)
262 PRK06138 short chain dehydroge 91.4 1.2 2.6E-05 42.4 9.2 34 82-116 3-37 (252)
263 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.3 0.42 9.1E-06 51.7 6.5 34 84-118 5-38 (503)
264 PRK08213 gluconate 5-dehydroge 91.3 1.3 2.7E-05 42.6 9.3 35 81-116 9-44 (259)
265 TIGR01373 soxB sarcosine oxida 91.3 0.33 7.2E-06 50.3 5.6 44 84-127 30-74 (407)
266 PRK13303 L-aspartate dehydroge 91.2 0.65 1.4E-05 45.9 7.3 22 85-106 2-23 (265)
267 PRK12939 short chain dehydroge 91.2 1.2 2.5E-05 42.3 8.9 34 81-115 4-38 (250)
268 PLN02662 cinnamyl-alcohol dehy 91.2 2.7 5.8E-05 41.7 11.8 33 84-117 4-37 (322)
269 PRK12320 hypothetical protein; 91.1 1.6 3.5E-05 49.1 11.0 92 86-209 2-103 (699)
270 PRK05866 short chain dehydroge 91.1 1.2 2.6E-05 44.3 9.1 35 82-117 38-73 (293)
271 PRK12829 short chain dehydroge 91.1 0.97 2.1E-05 43.3 8.3 38 79-117 6-44 (264)
272 COG0665 DadA Glycine/D-amino a 91.1 0.32 7E-06 49.6 5.2 41 83-124 3-43 (387)
273 PRK07231 fabG 3-ketoacyl-(acyl 91.1 0.83 1.8E-05 43.3 7.7 35 82-117 3-38 (251)
274 cd05293 LDH_1 A subgroup of L- 91.0 0.29 6.3E-06 49.7 4.7 34 84-117 3-37 (312)
275 PRK02006 murD UDP-N-acetylmura 91.0 1.3 2.8E-05 47.7 9.9 35 82-117 5-39 (498)
276 cd05292 LDH_2 A subgroup of L- 91.0 0.32 6.9E-06 49.2 4.9 32 86-117 2-34 (308)
277 smart00846 Gp_dh_N Glyceraldeh 91.0 0.45 9.7E-06 43.1 5.4 115 86-206 2-118 (149)
278 COG0039 Mdh Malate/lactate deh 91.0 0.27 5.9E-06 49.9 4.4 33 85-117 1-34 (313)
279 cd08281 liver_ADH_like1 Zinc-d 90.9 1.4 3E-05 45.2 9.7 34 83-116 191-224 (371)
280 PRK14982 acyl-ACP reductase; P 90.9 0.3 6.5E-06 50.2 4.7 37 81-117 152-190 (340)
281 PRK06949 short chain dehydroge 90.9 1.3 2.9E-05 42.2 9.0 35 82-117 7-42 (258)
282 cd02201 FtsZ_type1 FtsZ is a G 90.9 1.5 3.2E-05 44.4 9.6 39 86-124 2-42 (304)
283 PRK09414 glutamate dehydrogena 90.9 0.56 1.2E-05 50.0 6.8 36 81-116 229-264 (445)
284 PRK12809 putative oxidoreducta 90.9 1.6 3.5E-05 48.6 10.8 35 83-118 309-343 (639)
285 KOG0024 Sorbitol dehydrogenase 90.9 1.2 2.6E-05 45.4 8.7 101 83-208 169-275 (354)
286 PRK13394 3-hydroxybutyrate deh 90.9 1.7 3.7E-05 41.5 9.7 36 81-117 4-40 (262)
287 TIGR03376 glycerol3P_DH glycer 90.9 1.1 2.4E-05 46.1 8.8 103 86-207 1-116 (342)
288 PRK12771 putative glutamate sy 90.9 1.6 3.4E-05 47.8 10.5 36 82-118 135-170 (564)
289 TIGR03026 NDP-sugDHase nucleot 90.9 2 4.4E-05 45.0 11.0 41 86-127 2-42 (411)
290 PRK06223 malate dehydrogenase; 90.8 0.34 7.4E-06 48.6 5.0 33 85-117 3-35 (307)
291 TIGR01214 rmlD dTDP-4-dehydror 90.7 1.2 2.6E-05 43.4 8.7 30 86-116 1-31 (287)
292 PRK05472 redox-sensing transcr 90.7 3.1 6.7E-05 39.6 11.2 91 84-207 84-177 (213)
293 PLN02602 lactate dehydrogenase 90.7 0.34 7.3E-06 50.1 4.8 32 85-116 38-70 (350)
294 PRK12439 NAD(P)H-dependent gly 90.6 1.5 3.3E-05 44.8 9.7 102 85-207 8-111 (341)
295 PRK11730 fadB multifunctional 90.6 0.4 8.6E-06 54.2 5.7 100 85-199 314-417 (715)
296 cd05296 GH4_P_beta_glucosidase 90.6 1.3 2.9E-05 46.8 9.4 96 86-202 2-104 (419)
297 TIGR01318 gltD_gamma_fam gluta 90.6 1.7 3.6E-05 46.6 10.2 34 83-117 140-173 (467)
298 PRK06125 short chain dehydroge 90.6 1.8 3.8E-05 41.7 9.6 35 82-117 5-40 (259)
299 PRK11199 tyrA bifunctional cho 90.6 1.3 2.8E-05 46.1 9.1 32 85-117 99-131 (374)
300 PRK09291 short chain dehydroge 90.5 4.8 0.0001 38.3 12.5 79 84-184 2-82 (257)
301 PRK11579 putative oxidoreducta 90.5 6 0.00013 40.3 13.8 128 85-249 5-145 (346)
302 PLN02166 dTDP-glucose 4,6-dehy 90.3 2.8 6E-05 44.6 11.5 34 83-117 119-153 (436)
303 PLN02989 cinnamyl-alcohol dehy 90.3 4.9 0.00011 40.0 12.8 33 84-117 5-38 (325)
304 TIGR01850 argC N-acetyl-gamma- 90.2 1.1 2.4E-05 46.0 8.2 98 86-209 2-101 (346)
305 PRK00436 argC N-acetyl-gamma-g 90.1 1.6 3.4E-05 44.9 9.2 97 85-209 3-101 (343)
306 PRK11154 fadJ multifunctional 90.1 0.33 7.1E-06 54.8 4.5 99 85-201 310-416 (708)
307 PRK03369 murD UDP-N-acetylmura 90.1 0.66 1.4E-05 49.9 6.7 33 83-116 11-43 (488)
308 PF01266 DAO: FAD dependent ox 90.1 0.48 1E-05 47.1 5.3 35 86-121 1-35 (358)
309 PRK08268 3-hydroxy-acyl-CoA de 90.1 0.56 1.2E-05 50.8 6.1 33 85-118 8-40 (507)
310 PLN02827 Alcohol dehydrogenase 90.0 1.9 4.2E-05 44.4 9.9 34 83-116 193-226 (378)
311 PLN02695 GDP-D-mannose-3',5'-e 90.0 2.1 4.6E-05 44.1 10.1 33 83-116 20-53 (370)
312 PRK11259 solA N-methyltryptoph 90.0 0.42 9.1E-06 48.7 4.9 35 84-119 3-37 (376)
313 PRK07679 pyrroline-5-carboxyla 90.0 2.1 4.6E-05 42.3 9.8 91 84-206 3-98 (279)
314 PLN02780 ketoreductase/ oxidor 89.9 1.6 3.4E-05 44.2 9.0 60 84-163 53-113 (320)
315 TIGR00465 ilvC ketol-acid redu 89.9 1.3 2.9E-05 45.0 8.4 31 82-113 1-31 (314)
316 TIGR02197 heptose_epim ADP-L-g 89.9 1.9 4E-05 42.5 9.3 30 87-116 1-31 (314)
317 TIGR01181 dTDP_gluc_dehyt dTDP 89.9 3.5 7.7E-05 40.3 11.3 31 86-116 1-33 (317)
318 PF10087 DUF2325: Uncharacteri 89.9 2.1 4.6E-05 35.5 8.2 70 138-210 10-85 (97)
319 PRK06128 oxidoreductase; Provi 89.8 2.2 4.7E-05 42.4 9.8 36 79-115 50-86 (300)
320 PRK06139 short chain dehydroge 89.8 1.3 2.9E-05 45.0 8.3 36 81-117 4-40 (330)
321 cd00650 LDH_MDH_like NAD-depen 89.7 1.6 3.4E-05 42.9 8.5 32 87-118 1-36 (263)
322 PRK00683 murD UDP-N-acetylmura 89.7 1.8 3.8E-05 45.5 9.4 35 83-118 2-36 (418)
323 PLN02253 xanthoxin dehydrogena 89.7 2 4.4E-05 41.8 9.3 35 81-116 15-50 (280)
324 TIGR02437 FadB fatty oxidation 89.6 0.59 1.3E-05 52.8 6.1 102 85-201 314-419 (714)
325 PRK04207 glyceraldehyde-3-phos 89.6 2.2 4.7E-05 43.9 9.8 39 169-209 73-111 (341)
326 PRK06940 short chain dehydroge 89.6 2.2 4.8E-05 41.8 9.5 32 84-117 2-33 (275)
327 PLN02688 pyrroline-5-carboxyla 89.6 3.5 7.6E-05 40.2 10.9 23 86-108 2-24 (266)
328 PF02571 CbiJ: Precorrin-6x re 89.6 2.1 4.6E-05 42.1 9.2 96 85-207 1-100 (249)
329 TIGR03466 HpnA hopanoid-associ 89.5 2.7 5.8E-05 41.5 10.2 31 86-117 2-33 (328)
330 PRK07035 short chain dehydroge 89.5 2.3 4.9E-05 40.6 9.3 36 81-117 5-41 (252)
331 TIGR01316 gltA glutamate synth 89.5 2.5 5.4E-05 44.9 10.5 35 82-117 131-165 (449)
332 PLN00141 Tic62-NAD(P)-related 89.5 4.1 8.8E-05 39.2 11.1 33 80-113 13-46 (251)
333 PTZ00431 pyrroline carboxylate 89.4 2.4 5.2E-05 41.7 9.5 85 83-207 2-90 (260)
334 PRK10538 malonic semialdehyde 89.4 2 4.4E-05 41.1 8.9 31 86-117 2-33 (248)
335 PLN00016 RNA-binding protein; 89.4 2.4 5.2E-05 43.7 10.0 117 78-213 46-170 (378)
336 PLN02503 fatty acyl-CoA reduct 89.4 4.3 9.3E-05 45.1 12.3 133 75-215 110-275 (605)
337 PRK12409 D-amino acid dehydrog 89.4 0.5 1.1E-05 49.1 4.9 33 85-118 2-34 (410)
338 PRK07326 short chain dehydroge 89.4 2.4 5.1E-05 40.0 9.2 35 82-117 4-39 (237)
339 PRK12367 short chain dehydroge 89.4 0.67 1.5E-05 45.0 5.6 40 78-118 8-48 (245)
340 PRK09135 pteridine reductase; 89.3 2.2 4.7E-05 40.3 9.0 33 83-116 5-38 (249)
341 PRK10217 dTDP-glucose 4,6-dehy 89.3 3.7 8E-05 41.5 11.1 32 85-116 2-34 (355)
342 TIGR01472 gmd GDP-mannose 4,6- 89.2 4.2 9.2E-05 41.0 11.5 32 85-117 1-33 (343)
343 TIGR00065 ftsZ cell division p 89.2 1.6 3.5E-05 45.1 8.4 47 77-123 10-58 (349)
344 PRK07814 short chain dehydroge 89.2 2.4 5.3E-05 40.9 9.4 35 82-117 8-43 (263)
345 PTZ00188 adrenodoxin reductase 89.2 2.6 5.7E-05 45.5 10.2 96 83-186 38-137 (506)
346 PLN00106 malate dehydrogenase 89.2 0.59 1.3E-05 47.7 5.2 36 83-118 17-54 (323)
347 COG0673 MviM Predicted dehydro 89.1 1.7 3.6E-05 43.7 8.4 127 83-241 2-142 (342)
348 PRK06179 short chain dehydroge 89.1 3 6.5E-05 40.3 9.9 34 84-118 4-38 (270)
349 PRK06171 sorbitol-6-phosphate 89.1 4.2 9.1E-05 39.1 10.9 76 81-159 6-83 (266)
350 TIGR02818 adh_III_F_hyde S-(hy 89.1 3.3 7.2E-05 42.4 10.7 35 83-117 185-219 (368)
351 PRK10675 UDP-galactose-4-epime 89.0 5.3 0.00012 39.9 11.9 29 86-115 2-31 (338)
352 PRK13018 cell division protein 89.0 2.2 4.8E-05 44.5 9.3 41 81-121 25-67 (378)
353 PRK06196 oxidoreductase; Provi 88.9 2 4.3E-05 43.0 8.8 36 81-117 23-59 (315)
354 PRK15461 NADH-dependent gamma- 88.9 2.1 4.6E-05 42.8 8.9 113 85-211 2-124 (296)
355 cd08300 alcohol_DH_class_III c 88.8 3.3 7.1E-05 42.4 10.5 35 83-117 186-220 (368)
356 PRK12810 gltD glutamate syntha 88.8 3.2 6.8E-05 44.4 10.6 34 83-117 142-175 (471)
357 PRK08264 short chain dehydroge 88.8 0.6 1.3E-05 44.2 4.7 37 82-118 4-41 (238)
358 PRK06035 3-hydroxyacyl-CoA deh 88.8 0.61 1.3E-05 46.5 4.9 35 85-120 4-38 (291)
359 TIGR01377 soxA_mon sarcosine o 88.8 0.59 1.3E-05 47.7 4.9 33 86-119 2-34 (380)
360 PRK06124 gluconate 5-dehydroge 88.7 2.7 5.8E-05 40.2 9.2 35 82-117 9-44 (256)
361 PRK07792 fabG 3-ketoacyl-(acyl 88.7 2.5 5.4E-05 42.2 9.3 36 80-116 8-44 (306)
362 COG1712 Predicted dinucleotide 88.7 1.2 2.7E-05 43.2 6.5 32 86-118 2-36 (255)
363 TIGR01772 MDH_euk_gproteo mala 88.6 0.59 1.3E-05 47.5 4.7 33 86-118 1-35 (312)
364 cd01339 LDH-like_MDH L-lactate 88.6 0.53 1.1E-05 47.2 4.3 31 87-117 1-31 (300)
365 PRK05565 fabG 3-ketoacyl-(acyl 88.6 2.3 4.9E-05 40.1 8.5 32 82-114 3-35 (247)
366 TIGR02441 fa_ox_alpha_mit fatt 88.5 0.42 9.2E-06 54.1 3.9 102 85-201 336-441 (737)
367 PRK08265 short chain dehydroge 88.5 0.81 1.8E-05 44.3 5.5 36 81-117 3-39 (261)
368 TIGR01763 MalateDH_bact malate 88.5 0.62 1.3E-05 47.1 4.7 32 85-116 2-33 (305)
369 PRK12491 pyrroline-5-carboxyla 88.5 1.6 3.6E-05 43.3 7.7 80 84-196 2-84 (272)
370 PRK07530 3-hydroxybutyryl-CoA 88.4 0.67 1.5E-05 46.1 4.9 34 84-118 4-37 (292)
371 COG0771 MurD UDP-N-acetylmuram 88.4 1.2 2.5E-05 47.6 6.9 39 81-120 4-42 (448)
372 PRK13243 glyoxylate reductase; 88.3 0.63 1.4E-05 47.6 4.7 36 80-116 146-181 (333)
373 PRK10309 galactitol-1-phosphat 88.3 2.7 5.9E-05 42.4 9.4 98 83-205 160-259 (347)
374 PRK13984 putative oxidoreducta 88.3 2.7 5.9E-05 46.3 10.0 35 83-118 282-316 (604)
375 PLN02650 dihydroflavonol-4-red 88.2 7 0.00015 39.6 12.3 33 84-117 5-38 (351)
376 PRK06249 2-dehydropantoate 2-r 88.2 0.66 1.4E-05 46.8 4.8 34 84-118 5-38 (313)
377 PRK12480 D-lactate dehydrogena 88.1 0.72 1.6E-05 47.2 5.0 88 80-206 142-233 (330)
378 PRK07067 sorbitol dehydrogenas 88.1 1.1 2.4E-05 43.0 6.1 37 81-118 3-40 (257)
379 PRK06130 3-hydroxybutyryl-CoA 88.1 0.72 1.6E-05 46.3 4.9 33 85-118 5-37 (311)
380 PF01494 FAD_binding_3: FAD bi 88.1 0.71 1.5E-05 45.8 4.9 34 85-119 2-35 (356)
381 PRK09072 short chain dehydroge 88.0 3 6.5E-05 40.2 9.1 35 82-117 3-38 (263)
382 PRK06545 prephenate dehydrogen 88.0 1.9 4.1E-05 44.5 8.1 33 85-118 1-33 (359)
383 cd01337 MDH_glyoxysomal_mitoch 87.9 0.67 1.4E-05 47.1 4.5 32 86-117 2-35 (310)
384 PLN02896 cinnamyl-alcohol dehy 87.9 9.6 0.00021 38.6 13.1 33 83-116 9-42 (353)
385 PTZ00325 malate dehydrogenase; 87.9 0.64 1.4E-05 47.4 4.4 35 82-116 6-42 (321)
386 PRK00141 murD UDP-N-acetylmura 87.8 0.62 1.3E-05 49.9 4.5 40 77-117 8-47 (473)
387 PRK08057 cobalt-precorrin-6x r 87.8 5.1 0.00011 39.4 10.5 94 84-207 2-99 (248)
388 TIGR01746 Thioester-redct thio 87.7 6.4 0.00014 39.2 11.6 30 86-115 1-32 (367)
389 PRK05855 short chain dehydroge 87.7 2.5 5.4E-05 45.4 9.1 39 78-117 309-348 (582)
390 TIGR01757 Malate-DH_plant mala 87.6 0.81 1.8E-05 47.9 5.1 34 84-117 44-84 (387)
391 TIGR02440 FadJ fatty oxidation 87.5 0.67 1.4E-05 52.2 4.7 33 85-118 305-338 (699)
392 COG0300 DltE Short-chain dehyd 87.5 2.8 6.1E-05 41.6 8.6 82 82-184 4-93 (265)
393 PRK06436 glycerate dehydrogena 87.5 0.63 1.4E-05 47.1 4.1 37 80-117 118-154 (303)
394 cd08299 alcohol_DH_class_I_II_ 87.5 5.1 0.00011 41.1 10.9 34 84-117 191-224 (373)
395 PRK03803 murD UDP-N-acetylmura 87.4 2.6 5.5E-05 44.6 8.9 33 84-117 6-38 (448)
396 PRK12814 putative NADPH-depend 87.4 3.8 8.2E-05 45.8 10.5 35 83-118 192-226 (652)
397 PRK06057 short chain dehydroge 87.4 1.3 2.8E-05 42.5 6.1 37 81-118 4-41 (255)
398 PRK05335 tRNA (uracil-5-)-meth 87.4 0.76 1.7E-05 48.7 4.7 32 84-116 2-33 (436)
399 TIGR03366 HpnZ_proposed putati 87.4 4.5 9.7E-05 39.7 10.0 35 82-116 119-153 (280)
400 PRK12778 putative bifunctional 87.4 3.5 7.7E-05 46.8 10.4 35 82-117 429-463 (752)
401 PRK07109 short chain dehydroge 87.4 4 8.6E-05 41.5 9.9 36 81-117 5-41 (334)
402 PRK08226 short chain dehydroge 87.3 2.1 4.6E-05 41.1 7.6 36 81-117 3-39 (263)
403 TIGR03364 HpnW_proposed FAD de 87.3 1 2.2E-05 45.8 5.6 34 86-120 2-35 (365)
404 PRK08818 prephenate dehydrogen 87.3 3.5 7.6E-05 43.0 9.5 35 82-116 2-37 (370)
405 PLN02928 oxidoreductase family 87.1 0.76 1.7E-05 47.3 4.5 92 80-196 155-248 (347)
406 PRK11064 wecC UDP-N-acetyl-D-m 87.1 4.1 8.8E-05 43.0 10.1 42 85-127 4-45 (415)
407 PRK08589 short chain dehydroge 87.1 2.7 5.8E-05 41.0 8.2 34 81-115 3-37 (272)
408 PF02629 CoA_binding: CoA bind 87.1 4.6 0.0001 33.4 8.5 91 83-207 2-93 (96)
409 PF04321 RmlD_sub_bind: RmlD s 87.1 2.3 5.1E-05 42.2 7.9 99 86-208 2-101 (286)
410 PRK15438 erythronate-4-phospha 87.0 0.77 1.7E-05 47.9 4.5 35 81-116 113-147 (378)
411 PRK07494 2-octaprenyl-6-methox 87.0 0.79 1.7E-05 47.1 4.6 35 84-119 7-41 (388)
412 PRK06046 alanine dehydrogenase 87.0 3.5 7.6E-05 42.0 9.3 77 83-187 128-205 (326)
413 PRK07453 protochlorophyllide o 87.0 2.7 5.8E-05 42.1 8.3 35 82-117 4-39 (322)
414 PRK01747 mnmC bifunctional tRN 87.0 0.8 1.7E-05 51.1 4.9 33 85-118 261-293 (662)
415 PRK08643 acetoin reductase; Va 86.9 4.2 9.1E-05 38.9 9.3 32 84-116 2-34 (256)
416 cd00704 MDH Malate dehydrogena 86.9 0.79 1.7E-05 46.8 4.5 33 86-118 2-41 (323)
417 TIGR01759 MalateDH-SF1 malate 86.9 0.78 1.7E-05 46.9 4.4 32 85-116 4-42 (323)
418 PRK06182 short chain dehydroge 86.9 2.8 6E-05 40.7 8.2 34 83-117 2-36 (273)
419 PRK06198 short chain dehydroge 86.9 1.5 3.2E-05 42.1 6.1 37 81-117 3-40 (260)
420 PRK06185 hypothetical protein; 86.8 0.87 1.9E-05 47.1 4.8 35 83-118 5-39 (407)
421 PRK06500 short chain dehydroge 86.8 1.3 2.8E-05 42.0 5.7 36 81-117 3-39 (249)
422 PRK12429 3-hydroxybutyrate deh 86.8 3.6 7.8E-05 39.1 8.8 34 82-116 2-36 (258)
423 PRK08324 short chain dehydroge 86.7 6.9 0.00015 43.9 12.2 34 83-117 421-455 (681)
424 TIGR03206 benzo_BadH 2-hydroxy 86.7 3.7 7.9E-05 38.9 8.8 35 82-117 1-36 (250)
425 PRK07677 short chain dehydroge 86.7 4.4 9.4E-05 38.8 9.3 33 84-117 1-34 (252)
426 PRK08278 short chain dehydroge 86.7 4.7 0.0001 39.3 9.7 35 82-117 4-39 (273)
427 PLN02968 Probable N-acetyl-gam 86.7 3.9 8.4E-05 42.8 9.5 104 83-215 37-141 (381)
428 PRK00257 erythronate-4-phospha 86.6 0.88 1.9E-05 47.6 4.7 36 80-116 112-147 (381)
429 TIGR01758 MDH_euk_cyt malate d 86.6 0.82 1.8E-05 46.7 4.4 32 86-117 1-39 (324)
430 PRK00711 D-amino acid dehydrog 86.6 0.96 2.1E-05 46.9 5.0 32 86-118 2-33 (416)
431 PRK08300 acetaldehyde dehydrog 86.6 3.7 8E-05 41.6 8.9 96 83-209 3-103 (302)
432 PRK09853 putative selenate red 86.6 3.4 7.5E-05 48.4 9.8 35 83-118 538-572 (1019)
433 PRK08063 enoyl-(acyl carrier p 86.5 3.7 8E-05 38.9 8.7 30 82-111 2-32 (250)
434 PRK05717 oxidoreductase; Valid 86.5 1.6 3.5E-05 41.8 6.2 36 81-117 7-43 (255)
435 PRK08773 2-octaprenyl-3-methyl 86.5 0.85 1.8E-05 47.0 4.5 34 84-118 6-39 (392)
436 cd08301 alcohol_DH_plants Plan 86.4 5.3 0.00012 40.7 10.3 35 83-117 187-221 (369)
437 COG2084 MmsB 3-hydroxyisobutyr 86.4 7.7 0.00017 39.0 11.0 114 85-211 1-124 (286)
438 PRK08309 short chain dehydroge 86.3 6.3 0.00014 36.6 9.8 101 86-210 2-114 (177)
439 PRK07856 short chain dehydroge 86.3 2.9 6.2E-05 40.0 7.8 36 82-118 4-40 (252)
440 PRK08277 D-mannonate oxidoredu 86.3 2.1 4.5E-05 41.6 6.9 36 81-117 7-43 (278)
441 TIGR01832 kduD 2-deoxy-D-gluco 86.3 1 2.3E-05 42.8 4.7 34 82-116 3-37 (248)
442 PRK06129 3-hydroxyacyl-CoA deh 86.3 0.98 2.1E-05 45.5 4.7 32 86-118 4-35 (308)
443 PRK06184 hypothetical protein; 86.2 0.88 1.9E-05 48.9 4.6 33 84-117 3-35 (502)
444 TIGR01692 HIBADH 3-hydroxyisob 86.2 1.9 4.2E-05 42.9 6.8 112 89-211 1-119 (288)
445 cd08277 liver_alcohol_DH_like 86.2 8.1 0.00018 39.4 11.6 35 83-117 184-218 (365)
446 PTZ00075 Adenosylhomocysteinas 86.2 1 2.3E-05 48.2 5.0 37 81-118 251-287 (476)
447 PLN02545 3-hydroxybutyryl-CoA 86.2 1.1 2.3E-05 44.8 4.9 33 85-118 5-37 (295)
448 PRK11749 dihydropyrimidine deh 86.2 4.7 0.0001 42.8 10.1 34 83-117 139-172 (457)
449 TIGR02028 ChlP geranylgeranyl 86.1 0.9 2E-05 47.4 4.5 31 86-117 2-32 (398)
450 KOG1371 UDP-glucose 4-epimeras 86.1 11 0.00023 38.7 11.8 124 84-227 2-147 (343)
451 PRK08655 prephenate dehydrogen 86.1 2.6 5.7E-05 44.8 8.0 31 86-117 2-33 (437)
452 PRK12744 short chain dehydroge 86.0 4.5 9.8E-05 38.8 9.1 33 81-113 5-38 (257)
453 PF00670 AdoHcyase_NAD: S-aden 86.0 1.1 2.4E-05 41.3 4.4 39 80-119 19-57 (162)
454 TIGR01777 yfcH conserved hypot 86.0 9.8 0.00021 36.8 11.6 31 87-118 1-32 (292)
455 PRK03806 murD UDP-N-acetylmura 86.0 2.4 5.3E-05 44.6 7.7 35 82-117 4-38 (438)
456 PRK05714 2-octaprenyl-3-methyl 86.0 0.88 1.9E-05 47.1 4.3 34 84-118 2-35 (405)
457 TIGR03215 ac_ald_DH_ac acetald 85.8 4.2 9.2E-05 40.8 8.9 92 85-207 2-95 (285)
458 KOG0068 D-3-phosphoglycerate d 85.8 5.6 0.00012 40.9 9.6 163 81-314 143-310 (406)
459 PRK09330 cell division protein 85.7 4.5 9.7E-05 42.4 9.3 110 82-207 11-134 (384)
460 cd01338 MDH_choloroplast_like 85.7 0.95 2.1E-05 46.2 4.3 34 84-117 2-42 (322)
461 PRK07454 short chain dehydroge 85.7 5.4 0.00012 37.7 9.3 33 84-117 6-39 (241)
462 PRK12775 putative trifunctiona 85.7 5.1 0.00011 47.1 10.8 96 83-186 429-528 (1006)
463 PRK09436 thrA bifunctional asp 85.6 2.8 6.1E-05 48.1 8.5 110 83-207 464-578 (819)
464 PRK06841 short chain dehydroge 85.4 1.3 2.8E-05 42.4 4.9 35 82-117 13-48 (255)
465 PRK07774 short chain dehydroge 85.4 1.7 3.6E-05 41.4 5.6 36 81-117 3-39 (250)
466 TIGR01921 DAP-DH diaminopimela 85.3 7.5 0.00016 39.8 10.5 34 84-117 3-37 (324)
467 PRK07608 ubiquinone biosynthes 85.3 1.2 2.6E-05 45.6 4.9 34 85-119 6-39 (388)
468 PRK11728 hydroxyglutarate oxid 85.3 1.2 2.5E-05 46.2 4.8 33 85-118 3-37 (393)
469 TIGR00696 wecB_tagA_cpsF bacte 85.1 3.7 8E-05 38.3 7.6 68 140-207 61-132 (177)
470 PRK07097 gluconate 5-dehydroge 84.9 5.4 0.00012 38.5 9.1 34 81-115 7-41 (265)
471 TIGR03325 BphB_TodD cis-2,3-di 84.9 2.4 5.2E-05 40.9 6.6 35 82-117 3-38 (262)
472 PRK08013 oxidoreductase; Provi 84.9 1.2 2.5E-05 46.3 4.7 34 84-118 3-36 (400)
473 PRK07825 short chain dehydroge 84.9 2 4.4E-05 41.6 6.1 35 82-117 3-38 (273)
474 TIGR00137 gid_trmFO tRNA:m(5)U 84.9 1.3 2.7E-05 47.2 4.8 32 85-117 1-32 (433)
475 PRK06935 2-deoxy-D-gluconate 3 84.9 5.6 0.00012 38.1 9.1 36 81-117 12-48 (258)
476 PRK07364 2-octaprenyl-6-methox 84.8 1.1 2.5E-05 46.3 4.5 35 84-119 18-52 (415)
477 PLN02256 arogenate dehydrogena 84.8 1.4 2.9E-05 44.7 4.9 36 81-117 33-68 (304)
478 PRK11873 arsM arsenite S-adeno 84.8 10 0.00022 37.2 11.0 34 83-117 77-111 (272)
479 PF05834 Lycopene_cycl: Lycope 84.8 3.9 8.4E-05 42.3 8.4 50 87-137 2-53 (374)
480 KOG1205 Predicted dehydrogenas 84.8 5.5 0.00012 39.9 9.1 39 75-113 3-42 (282)
481 PLN02586 probable cinnamyl alc 84.7 4.5 9.7E-05 41.4 8.8 33 83-116 183-215 (360)
482 PRK08850 2-octaprenyl-6-methox 84.7 1.1 2.3E-05 46.6 4.2 33 84-117 4-36 (405)
483 KOG2250 Glutamate/leucine/phen 84.7 6.4 0.00014 42.1 9.8 40 80-119 247-286 (514)
484 TIGR03570 NeuD_NnaD sugar O-ac 84.5 7.5 0.00016 35.5 9.4 88 86-205 1-88 (201)
485 TIGR02032 GG-red-SF geranylger 84.5 1.4 3E-05 42.7 4.7 33 86-119 2-34 (295)
486 PRK14175 bifunctional 5,10-met 84.4 1 2.2E-05 45.2 3.7 36 81-117 155-191 (286)
487 TIGR03315 Se_ygfK putative sel 84.4 6.7 0.00015 46.1 10.8 35 83-118 536-570 (1012)
488 PRK12921 2-dehydropantoate 2-r 84.3 1.2 2.7E-05 44.1 4.4 30 86-116 2-31 (305)
489 PRK08664 aspartate-semialdehyd 84.3 4.3 9.3E-05 41.8 8.4 103 84-209 3-109 (349)
490 PRK12831 putative oxidoreducta 84.3 6.3 0.00014 42.1 10.0 34 83-117 139-172 (464)
491 cd01336 MDH_cytoplasmic_cytoso 84.2 1.3 2.8E-05 45.2 4.5 34 85-118 3-43 (325)
492 PRK06487 glycerate dehydrogena 84.2 1.3 2.8E-05 45.0 4.5 77 80-198 144-221 (317)
493 PRK08849 2-octaprenyl-3-methyl 84.2 1.3 2.7E-05 45.8 4.5 33 84-117 3-35 (384)
494 TIGR02819 fdhA_non_GSH formald 84.1 3.2 7E-05 43.2 7.5 34 83-116 185-218 (393)
495 PRK07060 short chain dehydroge 84.1 1.6 3.5E-05 41.2 4.9 35 82-117 7-42 (245)
496 COG3640 CooC CO dehydrogenase 84.0 11 0.00023 37.1 10.3 61 86-149 2-69 (255)
497 PRK12748 3-ketoacyl-(acyl-carr 83.9 2.9 6.4E-05 40.1 6.7 35 82-117 3-40 (256)
498 TIGR02632 RhaD_aldol-ADH rhamn 83.9 5.4 0.00012 44.8 9.6 35 82-117 412-447 (676)
499 PF01370 Epimerase: NAD depend 83.9 4.6 9.9E-05 37.7 7.8 101 87-214 1-122 (236)
500 cd05297 GH4_alpha_glucosidase_ 83.9 2.7 5.9E-05 44.4 6.9 94 86-201 2-102 (423)
No 1
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-101 Score=740.70 Aligned_cols=413 Identities=54% Similarity=0.867 Sum_probs=372.0
Q ss_pred ccchhHHHHHhHHHHHHHHHHHHHHH-HHhhcccccccCCCCCCCCCCCCCCcc--ccchhHHHHHHhhhhHhccCHHHH
Q 013156 3 ETGKLKSLALLGTGAVLGSVSTVFLY-KLLSRNIARSHSKNVPNCMTHNGIPAL--DLLKDEVVAEQLTRNIQFFGVESQ 79 (448)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~e~~~Rq~~~~G~e~q 79 (448)
.+++|. | +++||++..+++..+. .|..... ....+.. .+.+ ..||+++++||++||+.|||+++|
T Consensus 2 ~k~twk-l--i~ttal~~v~~t~~~~ta~k~~k~-s~a~~~~--------k~~sk~~~ydd~lireqLarN~aFfGee~m 69 (430)
T KOG2018|consen 2 AKNTWK-L--IATTALISVFSTQLALTAGKGIKL-STAPDKN--------KNGSKPRQYDDELIREQLARNYAFFGEEGM 69 (430)
T ss_pred CcchHH-H--HHHHHHHHHHHHHHHHHhhhhhee-cccCCcc--------cCCCCcccccHHHHHHHHHhHHhhhhhhHH
Confidence 455666 5 7899999999987764 3433322 1111111 1122 489999999999999999999999
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+||+++.|+||||||||||++.+|+||||++|.|||+|+|++|+||||.+++.+|||.||+.|++++++.+.|||+|++.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar 149 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDAR 149 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHHHHHh
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVRHRL 239 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~l 239 (448)
+..++.++.++++.+++|+|+||+||+++++.|.+||+.+++++|+++|+++|+||||++++||+++..||++|++|++|
T Consensus 150 ~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrL 229 (430)
T KOG2018|consen 150 NMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRL 229 (430)
T ss_pred HhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCccCCceEEecCCCc---cccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHHHHHcCCC
Q 013156 240 RKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQV 316 (448)
Q Consensus 240 ~~~~g~~g~i~~v~s~e~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~~ 316 (448)
|+ +||.+|||||||.|+| ++.++|+++++++++++++++++|+||+|++|||||||+|||.++|+++|..|+++|+
T Consensus 230 rk-~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFGltiat~vlt~ia~~pm 308 (430)
T KOG2018|consen 230 RK-RGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFGLTIATYVLTQIAQYPM 308 (430)
T ss_pred HH-hccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHHHHHHHHHHHHHhcCCC
Confidence 98 9999999999999998 7889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHHHhcCCCcCCCCccccCCccccccCceEEeecCC
Q 013156 317 QTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDR 396 (448)
Q Consensus 317 ~~~~~~~~~~~~y~~~~~~l~~~~~~~~g~~~~ipi~~~DV~yLveEvwrgrS~~s~~~~~~~~~~~~~~~~L~l~RWd~ 396 (448)
++....+ |.++|+.++++|++ ++.++|.+...+++.+||.||+||+|+|||++|+.++ .+|+|+|||+
T Consensus 309 epi~~~n-rlk~Yd~i~q~l~~-e~~r~g~n~er~l~leev~YiVeEv~~GrS~i~~~st----------~kltlvrWd~ 376 (430)
T KOG2018|consen 309 EPIENKN-RLKHYDLIHQRLIE-EMTRYGTNAERELDLEEVSYIVEEVFHGRSAISGTST----------DKLTLVRWDA 376 (430)
T ss_pred Ccccccc-hhHHHHHHHHHHHH-HHHHhCCCccccccHHHHHHHHHHHHcCCCCCCCccc----------ceeEEEeecC
Confidence 8665555 89999999999999 6777887755699999999999999999999999863 4999999999
Q ss_pred CCCCCCCcEEEeCHHHHHHHhhccchhhhcchhHHHHHHHHHHH
Q 013156 397 EKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLK 440 (448)
Q Consensus 397 ~~p~~~~NlVllt~~Ea~~He~~~~~~~~~~~~~~~~~v~~~~~ 440 (448)
++|+++.|+|+||++||+.||+++|++..+.+..+.++|-..+.
T Consensus 377 ~kp~sltNlVlltk~Ea~~HE~rvL~~~~~~~tvy~e~Vl~vv~ 420 (430)
T KOG2018|consen 377 KKPISLTNLVLLTKNEADEHEDRVLEEVEELETVYFERVLCVVK 420 (430)
T ss_pred CCCcceeeeEEeechHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 99999999999999999999998877765555555555444333
No 2
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-58 Score=437.65 Aligned_cols=248 Identities=36% Similarity=0.582 Sum_probs=224.4
Q ss_pred HHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHH
Q 013156 61 EVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKA 140 (448)
Q Consensus 61 e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv 140 (448)
+.+++||.|+.+|+|+++.++|++++|+|||+||||||++++|+|+|||+|+|||+|.|+.+|+|||..+...+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceee
Q 013156 141 LCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRV 220 (448)
Q Consensus 141 ~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i 220 (448)
+++++|++.|||+|+|.++..+++++|.++++..+||+||||+|++.+|..|..+|+++++|+|++||+|++.|||||++
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v 166 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQV 166 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEEe
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHhhhhc--CccCCceEEecCCCcccc----CCCCCCCCCCCCCCCCCcccCCCcccccCcccc
Q 013156 221 ADLRESTNDPLSRAVRHRLRKDY--GIEGGIPVVFSLEKPKAK----LLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294 (448)
Q Consensus 221 ~di~~~~~dpl~~~~r~~l~~~~--g~~g~i~~v~s~e~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~ 294 (448)
.||++|..|||++.+|++||+ . |+..|+|||||+|.|.+. .++..+.+.+ .+ ......+.+|++++
T Consensus 167 ~DiskT~~DPLa~~vR~~LRk-~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~--~~-----~~~~c~~~~gs~~~ 238 (263)
T COG1179 167 ADISKTIQDPLAAKVRRKLRK-RFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAE--SA-----KRLDCARGLGSATF 238 (263)
T ss_pred eechhhccCcHHHHHHHHHHH-hccCCccCCceEecCCCCCCCcccccccccchhhc--cc-----hhhhhhcCCCcccc
Confidence 999999999999999999999 5 788889999999988532 1111111000 11 11223356899999
Q ss_pred hHHHHHHHHHHHHHHHHHcCCC
Q 013156 295 IPAIFGMVMASHVVTQLAERQV 316 (448)
Q Consensus 295 ~~~i~G~~~A~~vl~~l~g~~~ 316 (448)
+|++||+.+|++||+.|+.++.
T Consensus 239 Vta~fGl~~as~vv~~i~~~~~ 260 (263)
T COG1179 239 VTAVFGLVAASEVVKKILDKKA 260 (263)
T ss_pred cchHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999998763
No 3
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=6e-53 Score=413.50 Aligned_cols=252 Identities=29% Similarity=0.473 Sum_probs=218.9
Q ss_pred cchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccC
Q 013156 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG 136 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG 136 (448)
+++++. +||+||.++||.++|++|++++|+|+|+||+||++|++|+|+|||+|+|+|+|.|+.+|||||+++..+|+|
T Consensus 5 ~~~~~~--~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG 82 (268)
T PRK15116 5 ISDAWR--QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG 82 (268)
T ss_pred CCHHHH--HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcC
Confidence 455554 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013156 137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT 216 (448)
Q Consensus 137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~ 216 (448)
++|++++++++.++||+++|+++...++.++.++++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||+
T Consensus 83 ~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 83 LAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred hHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 99999999999999999999999888888888888865699999999999999999999999999999999999999999
Q ss_pred ceeecccccccCCchhHHHHHHhhhhcCcc------CCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCccc-cc
Q 013156 217 RIRVADLRESTNDPLSRAVRHRLRKDYGIE------GGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVR-II 289 (448)
Q Consensus 217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~------g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 289 (448)
+++++||++|..|||++.+|++||+.+|+. ++++||||.|.|.....+-.. .. .+..........|+ ..
T Consensus 163 ~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~--~~--~~~~~~~~~~~~c~~~~ 238 (268)
T PRK15116 163 QIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSV--CA--MKSTAEGPKRMDCASGF 238 (268)
T ss_pred eEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCccccc--cc--ccccccccccccCCCCC
Confidence 999999999999999999999999988986 579999999988653211000 00 00000001112232 34
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcC
Q 013156 290 PVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
++...+|++||+++|.+||+.|++.
T Consensus 239 gs~~~v~~~~G~~~a~~vi~~l~~~ 263 (268)
T PRK15116 239 GAATMVTATFGFVAVSHALKKMMAK 263 (268)
T ss_pred CcceehhHHHHHHHHHHHHHHHHhh
Confidence 7777899999999999999999865
No 4
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=1.9e-52 Score=402.94 Aligned_cols=231 Identities=45% Similarity=0.715 Sum_probs=207.6
Q ss_pred cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCC
Q 013156 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE 153 (448)
Q Consensus 74 ~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~ 153 (448)
+|+++|++|++++|+|+||||+||+++++|+|+|||+|+|+|+|.|+++|||||++++.+|+|++|+++++++++++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhH
Q 013156 154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~ 233 (448)
++|+++...+++++..+++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||+++++.||++|..|||++
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~ 160 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR 160 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence 99999999999988888887669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHH
Q 013156 234 AVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308 (448)
Q Consensus 234 ~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl 308 (448)
.+|++||+ .|+..+++||||+|.|.....+.... ... +.......+.+++..|+++.+|++||+++|.+||
T Consensus 161 ~~R~~Lrk-~~~~~~~~~v~S~E~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi 231 (231)
T cd00755 161 KVRKRLRK-RGIFFGVPVVYSTEPPDPPKADELVC--GDE-VGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231 (231)
T ss_pred HHHHHHHH-cCCCCCeEEEeCCCCCCCCccccccc--ccc-ccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence 99999999 78877799999999987643322111 011 1122223456667889999999999999999985
No 5
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=5.8e-47 Score=373.04 Aligned_cols=258 Identities=24% Similarity=0.300 Sum_probs=202.1
Q ss_pred HHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHH
Q 013156 63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~ 142 (448)
++++|+||+.++|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||++|+++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCCh--HHHHHHHHHHHHcCCcEEEEcCCCCccCCCceee
Q 013156 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARADPTRIRV 220 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~--~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i 220 (448)
++++++++||+++|++++..++++++.+++.+ +|+||||+||+ ++|+.+|++|+++++|+|+++.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~-~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~------------ 152 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDG-VDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP------------ 152 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec------------
Confidence 99999999999999999999999999999986 99999999986 8999999999999999999875
Q ss_pred cccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCC---CCCC--------CCCCC--CCccc-----C
Q 013156 221 ADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTG---PSGE--------DENPS--DYQMV-----P 282 (448)
Q Consensus 221 ~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~---~~~~--------~~~~~--~~~~~-----~ 282 (448)
.|+.|++.+++ ++.||++|+ |+. ...+ ...|. +.+++ -
T Consensus 153 ----------------------~g~~gqv~v~~-p~~p~~~~~-f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~ 208 (287)
T PRK08223 153 ----------------------LGMGTALLVFD-PGGMSFDDY-FDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRV 208 (287)
T ss_pred ----------------------cCCeEEEEEEc-CCCCchhhh-cCCCCCCCchhhhcccCCcCCCccccCCcccccccc
Confidence 45566665554 458999887 332 1100 01111 11222 0
Q ss_pred CCcccccCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHH
Q 013156 283 GFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAK 362 (448)
Q Consensus 283 ~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~g~~~~ipi~~~DV~yLve 362 (448)
++.-+..|..|++|+++|++||.|+||.|+|.. +++...+.-+|+..-.++... ...+| .+-|++.--+.|+.+
T Consensus 209 ~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g---~~~~~~~~~~~d~~~~~~~~~-~~~~g--~~~p~q~~~~~~~~~ 282 (287)
T PRK08223 209 DLENRTGPSTGLACQLCAGVVATEVLKILLGRG---RVYAAPWFHQFDAYRSRYVRT-WRPGG--NRHPLQRLKRRLLRR 282 (287)
T ss_pred ccccccCCCccchHHHHHHHHHHHHHHHHhCCC---CcCCCCeEEEEEcCCceEEEE-EecCC--CCCHHHHHHHHHHHH
Confidence 122233455599999999999999999999973 222122333344333333332 12234 467888887777764
Q ss_pred H
Q 013156 363 E 363 (448)
Q Consensus 363 E 363 (448)
-
T Consensus 283 ~ 283 (287)
T PRK08223 283 R 283 (287)
T ss_pred H
Confidence 3
No 6
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-44 Score=372.62 Aligned_cols=214 Identities=30% Similarity=0.455 Sum_probs=189.0
Q ss_pred cccchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccC
Q 013156 55 LDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR 132 (448)
Q Consensus 55 ~~~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~ 132 (448)
..+.++|+ +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.
T Consensus 9 ~~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~ 86 (390)
T PRK07411 9 IQLSKDEY--ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGT 86 (390)
T ss_pred ccCCHHHH--HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccCh
Confidence 34666776 899999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013156 133 ADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR 212 (448)
Q Consensus 133 ~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~ 212 (448)
+|||++||++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..||++|+++++|+|+++.
T Consensus 87 ~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~---- 161 (390)
T PRK07411 87 SWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAP-YDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSI---- 161 (390)
T ss_pred HHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE----
Confidence 999999999999999999999999999999999888888886 999999999999999999999999999999875
Q ss_pred cCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcc
Q 013156 213 ADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVL 292 (448)
Q Consensus 213 ~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl 292 (448)
.|+.|++.++.+.++||++|+ ++.... . ...| .|...||+
T Consensus 162 ------------------------------~g~~g~~~v~~~~~~~c~~c~-~~~~~~-~------~~~~--~c~~~gvl 201 (390)
T PRK07411 162 ------------------------------FRFEGQATVFNYEGGPNYRDL-YPEPPP-P------GMVP--SCAEGGVL 201 (390)
T ss_pred ------------------------------ccCEEEEEEECCCCCCChHHh-cCCCCC-c------ccCC--CCccCCcC
Confidence 455566655544678999998 443210 0 1122 25577999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCC
Q 013156 293 GSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 293 g~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
||+++++|+++|+|+||+|+|.+
T Consensus 202 g~~~~~~g~~~a~eaik~l~g~~ 224 (390)
T PRK07411 202 GILPGIIGVIQATETIKIILGAG 224 (390)
T ss_pred cchHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999973
No 7
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=3.3e-44 Score=349.29 Aligned_cols=211 Identities=28% Similarity=0.461 Sum_probs=184.9
Q ss_pred ccchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCC
Q 013156 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
++.++|+ +||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++|||+||++|+.+
T Consensus 4 ~l~~~~~--~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~ 81 (245)
T PRK05690 4 ELSDEEM--LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDA 81 (245)
T ss_pred CCCHHHH--HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChh
Confidence 4666776 899999976 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013156 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~ 213 (448)
|||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||++++..++++|+++++|+|+++..
T Consensus 82 dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~-~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~---- 156 (245)
T PRK05690 82 TIGQPKVESARAALARINPHIAIETINARLDDDELAALIAG-HDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAI---- 156 (245)
T ss_pred hCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeec----
Confidence 99999999999999999999999999999988888888875 9999999999999999999999999999997643
Q ss_pred CCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCC-CccccCCCCCCCCCCCCCCCCCcccCCCcccccCcc
Q 013156 214 DPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVL 292 (448)
Q Consensus 214 dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl 292 (448)
|+.|++.++.+.+ +||++|+ ++... +.. ..+...||+
T Consensus 157 ------------------------------g~~G~v~~~~~~~~~~c~~c~-~~~~~--~~~---------~~~~~~gv~ 194 (245)
T PRK05690 157 ------------------------------RMEGQVTVFTYQDDEPCYRCL-SRLFG--ENA---------LTCVEAGVM 194 (245)
T ss_pred ------------------------------cCCceEEEEecCCCCceeeec-cCCCC--CCC---------CCcccCCcc
Confidence 4456565555443 6999998 33211 100 134567999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCC
Q 013156 293 GSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 293 g~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
||+++++|+++|+|+|++|+|..
T Consensus 195 ~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 195 APLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred chHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999873
No 8
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=342.57 Aligned_cols=207 Identities=29% Similarity=0.499 Sum_probs=183.6
Q ss_pred cchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccC
Q 013156 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG 136 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG 136 (448)
+.++|+ +||+||+.+||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|+|
T Consensus 2 l~~~~~--~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 79 (231)
T PRK08328 2 LSEREL--ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLG 79 (231)
T ss_pred CCHHHH--HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcC
Confidence 345665 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-hHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013156 137 T-PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 137 ~-~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp 215 (448)
+ +|+++++++++++||+++|+++...+++++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..
T Consensus 80 ~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~-~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~------ 152 (231)
T PRK08328 80 KNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG-VDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVE------ 152 (231)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeec------
Confidence 9 6999999999999999999999988888888888875 9999999999999999999999999999998764
Q ss_pred CceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccch
Q 013156 216 TRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI 295 (448)
Q Consensus 216 ~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~ 295 (448)
|+.|++.++.+.++||+.|+ ++... . .....|++||+
T Consensus 153 ----------------------------g~~G~v~~~~p~~~~c~~~~-~~~~~-~-------------~~~~~~~~~~~ 189 (231)
T PRK08328 153 ----------------------------GTYGQVTTIVPGKTKRLREI-FPKVK-K-------------KKGKFPILGAT 189 (231)
T ss_pred ----------------------------cCEEEEEEECCCCCCCHHHh-CCCCC-C-------------ccccCCcCchH
Confidence 45566666777788999876 33211 0 01235899999
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 013156 296 PAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 296 ~~i~G~~~A~~vl~~l~g~~ 315 (448)
++++|+++|+|+||+|+|..
T Consensus 190 ~~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 190 AGVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999963
No 9
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=8.6e-44 Score=363.57 Aligned_cols=205 Identities=29% Similarity=0.420 Sum_probs=183.9
Q ss_pred HHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHH
Q 013156 65 EQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 65 e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~ 142 (448)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|+|++|+++
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 86 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAES 86 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHH
Confidence 899999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecc
Q 013156 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD 222 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~d 222 (448)
++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..+|++|+++++|+|+++.
T Consensus 87 a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~-~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~-------------- 151 (355)
T PRK05597 87 AREAMLALNPDVKVTVSVRRLTWSNALDELRD-ADVILDGSDNFDTRHLASWAAARLGIPHVWASI-------------- 151 (355)
T ss_pred HHHHHHHHCCCcEEEEEEeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE--------------
Confidence 99999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred cccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHH
Q 013156 223 LRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV 302 (448)
Q Consensus 223 i~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~ 302 (448)
.|+.|++.++.+.+.||++|+ ++...... ..+ .|...||+||+++++|++
T Consensus 152 --------------------~g~~g~v~~~~~~~~~~~~~~-~~~~~~~~-------~~~--~c~~~gv~g~~~~~~g~~ 201 (355)
T PRK05597 152 --------------------LGFDAQLSVFHAGHGPIYEDL-FPTPPPPG-------SVP--SCSQAGVLGPVVGVVGSA 201 (355)
T ss_pred --------------------ecCeEEEEEEcCCCCCCHHHh-CCCCCCcc-------CCC--CccccCcchhHHHHHHHH
Confidence 455677766656678999987 43321000 111 245679999999999999
Q ss_pred HHHHHHHHHHcC
Q 013156 303 MASHVVTQLAER 314 (448)
Q Consensus 303 ~A~~vl~~l~g~ 314 (448)
+|+|+||+|+|.
T Consensus 202 ~a~e~ik~l~g~ 213 (355)
T PRK05597 202 MAMEALKLITGV 213 (355)
T ss_pred HHHHHHHHHhCC
Confidence 999999999986
No 10
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=2.6e-43 Score=361.34 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=187.8
Q ss_pred ccccchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccccccc
Q 013156 54 ALDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT 131 (448)
Q Consensus 54 ~~~~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~ 131 (448)
...+.++|+ +||+||+++ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++|||+||++|+
T Consensus 11 ~~~~~~~e~--~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~ 88 (370)
T PRK05600 11 FMQLPTSEL--RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFG 88 (370)
T ss_pred CCCCCHHHH--HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCC
Confidence 335667776 899999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 132 RADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 132 ~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
.+|||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..+|++|+++++|+|+++.
T Consensus 89 ~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~--- 164 (370)
T PRK05600 89 ASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG-VDLVLDGSDSFATKFLVADAAEITGTPLVWGTV--- 164 (370)
T ss_pred hhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE---
Confidence 9999999999999999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred ccCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCC---CccccCCCCCCCCCCCCCCCCCcccCCCcccc
Q 013156 212 RADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLE---KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRI 288 (448)
Q Consensus 212 ~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (448)
.|+.|++.++.+.. .||+.|+ |++.. +. ...++ |..
T Consensus 165 -------------------------------~g~~G~v~v~~~~~~~~~~~~~~l-~~~~~-~~------~~~~~--c~~ 203 (370)
T PRK05600 165 -------------------------------LRFHGELAVFNSGPDHRGVGLRDL-FPEQP-SG------DSIPD--CAT 203 (370)
T ss_pred -------------------------------ecCEEEEEEEecCCCCCCCCcHhh-CCCCC-cc------ccCCC--Ccc
Confidence 45567666554442 5788877 44321 00 11222 457
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHcC
Q 013156 289 IPVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 289 ~pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
.||+||+++++|+++|+|+||+|+|.
T Consensus 204 ~gvlg~~~~~ig~~~a~eaik~l~g~ 229 (370)
T PRK05600 204 AGVLGATTAVIGALMATEAIKFLTGI 229 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 79999999999999999999999997
No 11
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=4.7e-43 Score=362.61 Aligned_cols=212 Identities=30% Similarity=0.444 Sum_probs=187.0
Q ss_pred ccchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCC
Q 013156 56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
.+.++|+ +||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+.+
T Consensus 14 ~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~ 91 (392)
T PRK07878 14 ELTRDEV--ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQS 91 (392)
T ss_pred CCCHHHH--HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChh
Confidence 5777776 999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013156 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 134 diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~ 213 (448)
|||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..+|++|+++++|+|+++.
T Consensus 92 diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~----- 165 (392)
T PRK07878 92 DVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQ-YDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI----- 165 (392)
T ss_pred cCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe-----
Confidence 99999999999999999999999999999998888888886 999999999999999999999999999999875
Q ss_pred CCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEec----CCCccccCCCCCCCCCCCCCCCCCcccCCCccccc
Q 013156 214 DPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFS----LEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII 289 (448)
Q Consensus 214 dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (448)
.|+.|++.++++ ..+||++|+ +++... . ...+. |...
T Consensus 166 -----------------------------~g~~G~v~~~~~~~~~~~~~c~~c~-~~~~~~-~------~~~~~--~~~~ 206 (392)
T PRK07878 166 -----------------------------YRFEGQASVFWEDAPDGLGLNYRDL-YPEPPP-P------GMVPS--CAEG 206 (392)
T ss_pred -----------------------------ccCEEEEEEEecCCCCCCCCeeeee-cCCCCC-c------cCCCC--CccC
Confidence 455676665553 257899997 432110 0 11222 4567
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcC
Q 013156 290 PVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
||+||+++++|+++|+|+||+|+|.
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~g~ 231 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLITGI 231 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999996
No 12
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=8.6e-43 Score=330.14 Aligned_cols=199 Identities=31% Similarity=0.476 Sum_probs=177.3
Q ss_pred HhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHH
Q 013156 66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~ 143 (448)
||+||+++ ||.++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+++||+||++|+.+|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 69999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeeccc
Q 013156 144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL 223 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di 223 (448)
+++++++||+++++++...++.++..+++.+ +|+||+|+||++++..++++|+++++|+|+++..
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~-------------- 145 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINN-VDLVLDCTDNFATRYLINDACVALGTPLISAAVV-------------- 145 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence 9999999999999999999888887888875 9999999999999999999999999999998753
Q ss_pred ccccCCchhHHHHHHhhhhcCccCCceEEecC-CCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHH
Q 013156 224 RESTNDPLSRAVRHRLRKDYGIEGGIPVVFSL-EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV 302 (448)
Q Consensus 224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~ 302 (448)
|+.|++.++.+. ++||+.|+ +++. .+. .+ .+...|++||+++++|++
T Consensus 146 --------------------g~~G~~~~~~p~~~~~c~~c~-~~~~--~~~-------~~--~~~~~~~~~~~~~~~~~~ 193 (202)
T TIGR02356 146 --------------------GFGGQLMVFDPGGEGPCLRCL-FPDI--ADT-------GP--SCATAGVIGPVVGVIGSL 193 (202)
T ss_pred --------------------cCeEEEEEEeCCCCCCChhhc-CCCC--ccc-------CC--CCccCCccchHHHHHHHH
Confidence 445666666666 68999998 3331 111 11 135679999999999999
Q ss_pred HHHHHHHHH
Q 013156 303 MASHVVTQL 311 (448)
Q Consensus 303 ~A~~vl~~l 311 (448)
+|+|+||+|
T Consensus 194 ~a~e~~k~l 202 (202)
T TIGR02356 194 QALEALKLL 202 (202)
T ss_pred HHHHHHHhC
Confidence 999999975
No 13
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.6e-42 Score=336.32 Aligned_cols=203 Identities=26% Similarity=0.435 Sum_probs=177.1
Q ss_pred HHhhhhHhcc--CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHH
Q 013156 65 EQLTRNIQFF--GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC 142 (448)
Q Consensus 65 e~~~Rq~~~~--G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~ 142 (448)
+||+||+.++ |.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||++|+++
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 82 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES 82 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence 7999999985 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecc
Q 013156 143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD 222 (448)
Q Consensus 143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~d 222 (448)
++++++++||+++|+++...++.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..|
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~-~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g------------ 149 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAE-HDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR------------ 149 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhc-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc------------
Confidence 99999999999999999999988888888876 99999999999999999999999999999977543
Q ss_pred cccccCCchhHHHHHHhhhhcCccCCceEE-ecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHH
Q 013156 223 LRESTNDPLSRAVRHRLRKDYGIEGGIPVV-FSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGM 301 (448)
Q Consensus 223 i~~~~~dpl~~~~r~~l~~~~g~~g~i~~v-~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~ 301 (448)
+.|++.++ +++..||+.|+.-...+ .. ..+...|++||+++++|+
T Consensus 150 ----------------------~~G~v~~~~~~~~~~c~~C~~~~~~~---~~---------~~~~~~gv~~p~~~~~~~ 195 (240)
T TIGR02355 150 ----------------------MEGQVSVFTYQDGEPCYRCLSRLFGE---NA---------LSCVEAGVMAPVVGVVGS 195 (240)
T ss_pred ----------------------cEeEEEEEecCCCCCccccccccCCC---CC---------CCccccCccchHHHHHHH
Confidence 34544333 34457899987211110 00 123456999999999999
Q ss_pred HHHHHHHHHHHcC
Q 013156 302 VMASHVVTQLAER 314 (448)
Q Consensus 302 ~~A~~vl~~l~g~ 314 (448)
++|+|+|++|+|.
T Consensus 196 ~~a~e~ik~l~g~ 208 (240)
T TIGR02355 196 LQAMEAIKVLAGI 208 (240)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999986
No 14
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=347.53 Aligned_cols=217 Identities=29% Similarity=0.437 Sum_probs=193.9
Q ss_pred CCccccchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccccc
Q 013156 52 IPALDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAV 129 (448)
Q Consensus 52 ~~~~~~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l 129 (448)
.....+..+|+ .||+||+.+ ||..||.+|++++|+||||||+||+++.+|+.+|||+|.|||+|.|+.|||+||.+
T Consensus 34 ~~~~~Ls~dei--~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVl 111 (427)
T KOG2017|consen 34 SREAGLSLDEI--LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVL 111 (427)
T ss_pred ccccCCCHHHH--HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHh
Confidence 34457888998 999999975 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 130 ATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 130 ~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
++++.+|++|+++++..++++||.++|+.+++.++.+|+.+++.+ ||+|+|||||+.+|++|+++|...|+|+|++++.
T Consensus 112 h~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~-YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaL 190 (427)
T KOG2017|consen 112 HTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQ-YDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSAL 190 (427)
T ss_pred hhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhc-cceEEEcCCCccchhhhhhHHHHcCCcccccccc
Confidence 999999999999999999999999999999999999999999996 9999999999999999999999999999998763
Q ss_pred CCccCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCccccc
Q 013156 210 GARADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII 289 (448)
Q Consensus 210 g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (448)
++.||+.+..-...|||+|+ ||.+.. | +.. .+|...
T Consensus 191 ----------------------------------r~EGQLtvYny~~GPCYRCl-FP~Ppp----~---~~v--t~C~dg 226 (427)
T KOG2017|consen 191 ----------------------------------RWEGQLTVYNYNNGPCYRCL-FPNPPP----P---EAV--TNCADG 226 (427)
T ss_pred ----------------------------------cccceeEEeecCCCceeeec-CCCCcC----h---HHh--cccccC
Confidence 55688765544678999998 554321 0 011 235667
Q ss_pred CcccchHHHHHHHHHHHHHHHHHcCC
Q 013156 290 PVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 290 pvlg~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
||+||+++++|.|+|-|+||.++|..
T Consensus 227 GVlGpv~GviG~mQALE~iKli~~~~ 252 (427)
T KOG2017|consen 227 GVLGPVTGVIGCMQALETIKLIAGIG 252 (427)
T ss_pred ceeecchhhhhHHHHHHHHHHHHccC
Confidence 99999999999999999999999864
No 15
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=7.2e-42 Score=329.48 Aligned_cols=204 Identities=35% Similarity=0.521 Sum_probs=179.8
Q ss_pred HhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHH
Q 013156 66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~ 143 (448)
||+||+++ ||.++|++|++++|+||||||+||++|++|+++|||+|+|+|+|.|+++|||||++++.+|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 69999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeeccc
Q 013156 144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL 223 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di 223 (448)
+++++++||+++|+.++..++.++..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~-~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~-------------- 145 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAG-YDLVLDCTDNFATRYLINDACVKLGKPLVSGAVL-------------- 145 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence 9999999999999999998888888888876 9999999999999999999999999999998753
Q ss_pred ccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHH
Q 013156 224 RESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM 303 (448)
Q Consensus 224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~ 303 (448)
|+.|.+.++.+.+.+|+.|+ +.... +.+ .-.+...|+++|+++++|+++
T Consensus 146 --------------------g~~g~v~~~~p~~~~c~~c~-~~~~~-~~~---------~~~~~~~~~~~~~~~~~a~l~ 194 (228)
T cd00757 146 --------------------GFEGQVTVFIPGEGPCYRCL-FPEPP-PPG---------VPSCAEAGVLGPLVGVIGSLQ 194 (228)
T ss_pred --------------------cCEEEEEEECCCCCCCcccc-CCCCC-CCC---------CCccccCCcchhHHHHHHHHH
Confidence 34455555666678999987 32211 000 011345699999999999999
Q ss_pred HHHHHHHHHcCC
Q 013156 304 ASHVVTQLAERQ 315 (448)
Q Consensus 304 A~~vl~~l~g~~ 315 (448)
|+|+|++|+|.+
T Consensus 195 a~e~i~~l~g~~ 206 (228)
T cd00757 195 ALEALKILLGIG 206 (228)
T ss_pred HHHHHHHHhCCC
Confidence 999999999985
No 16
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=2e-41 Score=343.84 Aligned_cols=205 Identities=27% Similarity=0.398 Sum_probs=182.1
Q ss_pred HHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCcc--CChH
Q 013156 64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV--GTPK 139 (448)
Q Consensus 64 ~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~di--G~~K 139 (448)
.+||+||+.+ ||.++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|+++||+||++|+.+|+ |++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3799999987 99999999999999999999999999999999999999999999999999999999999999 5699
Q ss_pred HHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCcee
Q 013156 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR 219 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~ 219 (448)
+++++++++++||+++|+++...++.++..+++.+ +|+||||+||++++..+|++|+++++|+|+++..|
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~-~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g--------- 151 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTG-VDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVG--------- 151 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcC-CCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeee---------
Confidence 99999999999999999999999998888888875 99999999999999999999999999999987643
Q ss_pred ecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHH
Q 013156 220 VADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF 299 (448)
Q Consensus 220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~ 299 (448)
..|+.+++++.++||+.|+ ++.... ++..|...+++||+++++
T Consensus 152 -------------------------~~G~~~~~~p~~~pC~~Cl-~~~~~~-----------~~~~c~~~gv~~p~~~~i 194 (339)
T PRK07688 152 -------------------------SYGLSYTIIPGKTPCLRCL-LQSIPL-----------GGATCDTAGIISPAVQIV 194 (339)
T ss_pred -------------------------eeeEEEEECCCCCCCeEee-cCCCCC-----------CCCCCccCCcccHHHHHH
Confidence 3355666777778999987 332110 012345679999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 013156 300 GMVMASHVVTQLAERQ 315 (448)
Q Consensus 300 G~~~A~~vl~~l~g~~ 315 (448)
|+++|+|+||+|+|..
T Consensus 195 ~~~~a~ealk~l~g~~ 210 (339)
T PRK07688 195 ASYQVTEALKLLVGDY 210 (339)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999973
No 17
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=343.09 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=182.1
Q ss_pred HHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccC--ChH
Q 013156 64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG--TPK 139 (448)
Q Consensus 64 ~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG--~~K 139 (448)
.+||+||+++ ||.++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|++|||+||++|+++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 4799999987 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCcee
Q 013156 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR 219 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~ 219 (448)
|++++++++++||+++|+++...++.++..+++.+ +|+||||+||++++..+|++|+++++|+|+++..|
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~-~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g--------- 151 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKE-VDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVG--------- 151 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc---------
Confidence 99999999999999999999988888888888875 99999999999999999999999999999987644
Q ss_pred ecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHH
Q 013156 220 VADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF 299 (448)
Q Consensus 220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~ 299 (448)
..|.++++.+.++||++|+ ++... . .+..+...|++||+++++
T Consensus 152 -------------------------~~G~~~~~~P~~tpC~~Cl-~~~~p------~-----~~~~c~~~Gvl~p~v~~i 194 (338)
T PRK12475 152 -------------------------SYGVTYTIIPGKTPCLRCL-MEHVP------V-----GGATCDTAGIIQPAVQIV 194 (338)
T ss_pred -------------------------cEEEEEEECCCCCCCHHHh-cCCCC------C-----CCCCCccCCcCchHHHHH
Confidence 3355566677889999998 33211 0 112355679999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 013156 300 GMVMASHVVTQLAERQ 315 (448)
Q Consensus 300 G~~~A~~vl~~l~g~~ 315 (448)
|+++|+|+||+|+|..
T Consensus 195 aslqa~EalK~L~g~~ 210 (338)
T PRK12475 195 VAYQVTEALKILVEDF 210 (338)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999863
No 18
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=9.2e-40 Score=336.53 Aligned_cols=212 Identities=29% Similarity=0.460 Sum_probs=184.3
Q ss_pred cchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCc
Q 013156 57 LLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD 134 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d 134 (448)
...+++ ++|+||+.+ ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+++||+||++++.+|
T Consensus 108 ~s~~~~--~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~d 185 (376)
T PRK08762 108 LTDEQD--ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185 (376)
T ss_pred CCHHHH--HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhh
Confidence 445555 899999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 135 VGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 135 iG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
||++|+++++++++++||+++|+.+...++.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..
T Consensus 186 iG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~----- 259 (376)
T PRK08762 186 VGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQD-VDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVF----- 259 (376)
T ss_pred CCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec-----
Confidence 9999999999999999999999999988888888888875 9999999999999999999999999999998753
Q ss_pred CCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCC----CccccCCCCCCCCCCCCCCCCCcccCCCcccccC
Q 013156 215 PTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLE----KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP 290 (448)
Q Consensus 215 p~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 290 (448)
|+.|++.++.+.. +||+.|+ ++.... ....| .|...|
T Consensus 260 -----------------------------g~~g~v~~~~p~~~~~~~~c~~c~-~~~~~~-------~~~~~--~~~~~g 300 (376)
T PRK08762 260 -----------------------------RFEGQVSVFDAGRQRGQAPCYRCL-FPEPPP-------PELAP--SCAEAG 300 (376)
T ss_pred -----------------------------cCEEEEEEEeCCCCCCCCCCHhhc-CCCCCC-------cccCC--CCccCC
Confidence 4445555555544 6899997 432110 01122 245679
Q ss_pred cccchHHHHHHHHHHHHHHHHHcCC
Q 013156 291 VLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 291 vlg~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
|+||+|+++|+++|+|+|++|+|..
T Consensus 301 v~g~~~~~~~~~~a~e~~k~l~g~~ 325 (376)
T PRK08762 301 VLGVLPGVIGLLQATEAIKLLLGIG 325 (376)
T ss_pred cchhhHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999973
No 19
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.1e-39 Score=307.75 Aligned_cols=144 Identities=23% Similarity=0.370 Sum_probs=136.1
Q ss_pred HHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHH
Q 013156 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~ 144 (448)
++|+||+++||.++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+.+||+||++++.+|+|++|+++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCC
Q 013156 145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAG 210 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g 210 (448)
++|+++||+++|+++...+++ +..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~-~~~~~~~~-~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISE-KPEEFFSQ-FDVVVATELSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred HHHHHHCCCCEEEEEecCccc-cHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 999999999999999888773 45566765 99999999999999999999999999999988643
No 20
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.7e-38 Score=299.98 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=134.8
Q ss_pred HhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccC--CccCChHHHHH
Q 013156 66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCL 143 (448)
Q Consensus 66 ~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~--~diG~~Kv~~~ 143 (448)
+|+||+++||.++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+++||+||++++. +|+|++|++++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHhhhhCCCceEEEEeccCC--ccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 144 KKHFSSIFPECHIDAKVLLYD--ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~--~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
+++|+++||+++|+++.+.++ .++..+++.. +|+||+|.|+++.+..++++|+++++|+|+++..
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~-~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~ 147 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQK-FTLVIATEENYERTAKVNDVCRKHHIPFISCATY 147 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 999999999999999988775 4556677775 9999999999999999999999999999998754
No 21
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=335.96 Aligned_cols=274 Identities=24% Similarity=0.265 Sum_probs=210.3
Q ss_pred cchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCC-ceEEEEeCCccccccccccccccCCcc
Q 013156 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADV 135 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~di 135 (448)
+.++|+.++||+||+.+||+++|++|++++|+||||| +||.+|.+|+++|| |+|+|+|+|.|++|||||| +|+..|+
T Consensus 80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di 157 (722)
T PRK07877 80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL 157 (722)
T ss_pred CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence 4578888999999999999999999999999999997 99999999999996 9999999999999999998 5899999
Q ss_pred CChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013156 136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp 215 (448)
|++||++++++++++||+++|+++...++.+|.++++.+ +|+||||+||+++|+.||++|++++||+|++++.+++.||
T Consensus 158 G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~-~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~g~~~~ 236 (722)
T PRK07877 158 GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDG-LDVVVEECDSLDVKVLLREAARARRIPVLMATSDRGLLDV 236 (722)
T ss_pred ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCc
Confidence 999999999999999999999999999999999999986 9999999999999999999999999999999999888888
Q ss_pred CceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCC--------CCCCCCCCcc-------
Q 013156 216 TRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSG--------EDENPSDYQM------- 280 (448)
Q Consensus 216 ~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~--------~~~~~~~~~~------- 280 (448)
+++.+.. +.||+.|+ ++..+. ++..|.-+..
T Consensus 237 e~~~~~p---------------------------------~~pc~~cl-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 282 (722)
T PRK07877 237 ERFDLEP---------------------------------DRPILHGL-LGDIDAAKLAGLSTKDKVPHVLRILDAEALS 282 (722)
T ss_pred ceeeeCC---------------------------------CCceeecc-CCCCChhhhccCChhccCcceeeeccccccC
Confidence 7664422 23333333 111000 0001110000
Q ss_pred --------cCCCcccccCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhh-----hCCC
Q 013156 281 --------VPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESL-----YGTA 347 (448)
Q Consensus 281 --------~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~-----~g~~ 347 (448)
-.+-.+..-|-|+..+.+-|++.|..+.++++|.|.....+.. +.+ ..+..+....... .+..
T Consensus 283 ~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i~l~~~~~sgr~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~ 358 (722)
T PRK07877 283 ARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRIGLGEPLESGRVRV-DLD---ELLDRLDDPPPPPSGAGWEAES 358 (722)
T ss_pred HHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHHHcCCcCCCCCEEe-cHH---HhhccccCCccccccccccccc
Confidence 0112344558899999999999999999999999866555543 332 2222222211111 1111
Q ss_pred ---------CccccCHHHHHHHHHHHhcCCCcC
Q 013156 348 ---------KEVQVDVEEVMYVAKELWHGRSAW 371 (448)
Q Consensus 348 ---------~~ipi~~~DV~yLveEvwrgrS~~ 371 (448)
.....+.+++..|++--...-|..
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~iv~aa~~APS~~ 391 (722)
T PRK07877 359 APPAPPADRAAEALPQDALEIVAAAAIRAPSGG 391 (722)
T ss_pred CCCCccccccccCCCHHHHHHHHHHHHhCcCcC
Confidence 111357889999999887777763
No 22
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-37 Score=300.80 Aligned_cols=213 Identities=34% Similarity=0.528 Sum_probs=186.0
Q ss_pred cchhHHHHHHhhhhHhc--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCc
Q 013156 57 LLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD 134 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~--~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d 134 (448)
+.+.++ ++|+||+.+ +|.++|++|++++|+|||+||+||+++++|+++|||+++|+|+|+|+.+||+||++|+.+|
T Consensus 3 ~~~~~~--~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~d 80 (254)
T COG0476 3 LSDEEI--ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEAD 80 (254)
T ss_pred ccHHHH--HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccc
Confidence 345555 999999998 5556699999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 135 VGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 135 iG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
+|++|+++++++++++||.++++++...++.+++.+++.. +|+|+||+||+++|+.+|++|+++++|+++++.
T Consensus 81 ig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~-~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~------ 153 (254)
T COG0476 81 VGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQ-FDVVLDCTDNFETRYLINDACVKLGIPLVHGGA------ 153 (254)
T ss_pred cCCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhcc-CCEEEECCCCHHHHHHHHHHHHHhCCCeEeeee------
Confidence 9999999999999999999999999999999999788875 999999999999999999999999999999875
Q ss_pred CCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCC-CccccCCCCCCCCCCCCCCCCCcccCCCcccccCccc
Q 013156 215 PTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG 293 (448)
Q Consensus 215 p~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg 293 (448)
.|+.|++.++.+.+ .||++|+ ++........ +. .|...+|+|
T Consensus 154 ----------------------------~~~~g~~~~~~~~~~~~c~~~~-~~~~~~~~~~-------~~-~c~~~gv~~ 196 (254)
T COG0476 154 ----------------------------IGFEGQVTVIIPGDKTPCYRCL-FPEKPPPGLV-------PT-SCDEAGVLG 196 (254)
T ss_pred ----------------------------ccceEEEEEEecCCCCCccccc-CCCCCCcccc-------cc-ccccCCccc
Confidence 34567777777774 8999987 3321101100 00 256789999
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 013156 294 SIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 294 ~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
+.++++|.++|.++++.++|.+
T Consensus 197 ~~~~~~~~~~~~~~~k~~~g~~ 218 (254)
T COG0476 197 PLVGVVGSLQALEAIKLLTGIG 218 (254)
T ss_pred cccchhhhHHHHHHHHHhcCCC
Confidence 9999999999999999999985
No 23
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=1.4e-36 Score=289.65 Aligned_cols=197 Identities=27% Similarity=0.334 Sum_probs=163.8
Q ss_pred hhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHH
Q 013156 67 LTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146 (448)
Q Consensus 67 ~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~ 146 (448)
+.+....||.++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+.+||+||+++ .+|+|++|+++++++
T Consensus 11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~ 89 (212)
T PRK08644 11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN 89 (212)
T ss_pred HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence 3444556999999999999999999999999999999999999999999999999999999865 789999999999999
Q ss_pred hhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceeeccccc
Q 013156 147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRE 225 (448)
Q Consensus 147 l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~-~ip~I~~~g~g~~~dp~~i~i~di~~ 225 (448)
++++||+++++++...++.++..+++.+ +|+||||+||+++|..+++.|+++ ++|+|++++.++...+
T Consensus 90 l~~lnp~v~v~~~~~~i~~~~~~~~~~~-~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~---------- 158 (212)
T PRK08644 90 LLEINPFVEIEAHNEKIDEDNIEELFKD-CDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDS---------- 158 (212)
T ss_pred HHHHCCCCEEEEEeeecCHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCc----------
Confidence 9999999999999999998888788875 999999999999999999999999 9999998776543322
Q ss_pred ccCCchhHHHHHHhhhhcCccCCceEEecCC--CccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHH
Q 013156 226 STNDPLSRAVRHRLRKDYGIEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM 303 (448)
Q Consensus 226 ~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~ 303 (448)
..+.+.+ .+|+ + .++.. .+ .+...|++||+++++|+++
T Consensus 159 ------------------------~~~~~~~~~~~~~-~--~~~~~----~~---------~~~~~gv~~~~~~~i~~~~ 198 (212)
T PRK08644 159 ------------------------NSIKTRRIGKNFY-I--VGDFV----TE---------AKPGNPLMAPRVNIAAAHQ 198 (212)
T ss_pred ------------------------eEEEecCCCCCee-E--CCCCC----cc---------cCCCCCccchHHHHHHHHH
Confidence 2222211 1122 1 11100 00 1224589999999999999
Q ss_pred HHHHHHHHHcCC
Q 013156 304 ASHVVTQLAERQ 315 (448)
Q Consensus 304 A~~vl~~l~g~~ 315 (448)
|+|+||+|+|.+
T Consensus 199 a~ealk~l~~~~ 210 (212)
T PRK08644 199 ANLVLRLILGEE 210 (212)
T ss_pred HHHHHHHHhCCC
Confidence 999999999974
No 24
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-36 Score=325.74 Aligned_cols=239 Identities=23% Similarity=0.343 Sum_probs=190.3
Q ss_pred chhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCC
Q 013156 58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 58 ~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~ 137 (448)
..++...++|+||+.+||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++|+.+|||+
T Consensus 17 ~~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 17 SAAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred CHHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence 34556669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCC--hHHHHHHHHHHHHcCCcEEEEcCCCCcc--
Q 013156 138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAGARA-- 213 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn--~~~r~~l~~~c~~~~ip~I~~~g~g~~~-- 213 (448)
+|+++++++++++||+++|++++..++.++..+++.+ +|+||||+|| +++|..|++.|++++||+|+++..|..+
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~-~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDG-VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence 9999999999999999999999999999999999986 9999999997 5689999999999999999988766543
Q ss_pred ---CCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccC
Q 013156 214 ---DPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP 290 (448)
Q Consensus 214 ---dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 290 (448)
+|....+.++.....| ....++-||...|+.- -|... .+- +...+ ++..+.-|
T Consensus 176 ~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~p-~~~~~----------~~~----------d~~~~-~l~~~~~~ 231 (679)
T PRK14851 176 LVFTPQGMGFDDYFNIGGK--MPEEQKYLRFAMGLAP-RPTHI----------KYM----------DLSKV-DLKGGKGP 231 (679)
T ss_pred EEEcCCCCCHhHhccCCCC--CChHHHHHHHHhcCCC-cchhh----------ccC----------cHhhc-CCccCcCC
Confidence 4555555555544333 2233444444333321 01000 000 11112 44445567
Q ss_pred cccchHHHHHHHHHHHHHHHHHcC-CCCCCcc
Q 013156 291 VLGSIPAIFGMVMASHVVTQLAER-QVQTEPI 321 (448)
Q Consensus 291 vlg~~~~i~G~~~A~~vl~~l~g~-~~~~~~~ 321 (448)
+++.-+.....+.+.+++++|.|+ +..+.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 263 (679)
T PRK14851 232 SLNIACQLCSGMAGTEAVRIILGKGGLRPVPC 263 (679)
T ss_pred CccHHHHhhhhhHHHHHHHHhhcCCeeeccch
Confidence 788888889999999999999885 4445554
No 25
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=333.24 Aligned_cols=237 Identities=24% Similarity=0.282 Sum_probs=186.5
Q ss_pred cchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccC
Q 013156 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG 136 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG 136 (448)
..-++...++|+||+.+||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|||
T Consensus 305 ~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG 384 (989)
T PRK14852 305 ETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFG 384 (989)
T ss_pred HHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCC
Confidence 34466788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCCh--HHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~--~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
++|+++++++++++||+++|+++...++.++.++++.+ +|+||||+|++ +.+..+++.|++++||+|+++..|.+
T Consensus 385 ~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~-~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~-- 461 (989)
T PRK14852 385 RGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKD-VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS-- 461 (989)
T ss_pred ChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhC-CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC--
Confidence 99999999999999999999999999999999999986 99999999985 56788999999999999998876543
Q ss_pred CCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCC-CCCCCC--CC---------CCCCCCCccc-
Q 013156 215 PTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLL-PFTGPS--GE---------DENPSDYQMV- 281 (448)
Q Consensus 215 p~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~-~~~~~~--~~---------~~~~~~~~~~- 281 (448)
|++. +|.+..+|+.|+ ++++.. .+ ...|.-+..+
T Consensus 462 --------------------------------g~v~-v~~p~~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~ 508 (989)
T PRK14852 462 --------------------------------CALL-VFMPGGMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMD 508 (989)
T ss_pred --------------------------------eeEE-EEcCCCCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccC
Confidence 3333 222233454443 111000 00 0001100111
Q ss_pred ---CCCcccccCcccchHHHHHHHHHHHHHHHHHcC-CCCCCccccccHHHHH
Q 013156 282 ---PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER-QVQTEPIVNMDVDHYR 330 (448)
Q Consensus 282 ---~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~-~~~~~~~~~~~~~~y~ 330 (448)
-++.-+.-|.++..+.+-++++|.+++++++|+ +....|... .++.|.
T Consensus 509 ~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~-qfd~~~ 560 (989)
T PRK14852 509 RRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFR-QFDPLT 560 (989)
T ss_pred cccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchh-ccchhh
Confidence 023335679999999999999999999999997 444444432 444443
No 26
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.1e-35 Score=292.17 Aligned_cols=141 Identities=22% Similarity=0.321 Sum_probs=133.1
Q ss_pred HhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHH
Q 013156 66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK 145 (448)
Q Consensus 66 ~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~ 145 (448)
.|+||+++||.++|++|++++|+|+||||+|+++|++|+++||++|+|+|+|.|+.+||+||++++.+|||++|++++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 146 HFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 146 ~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
+|+++||+++|+++...++. +++.. +|+||+|.|+++.+..+|++|+++++|+|+++..|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~----~~l~~-fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~ 141 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTT----DELLK-FQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGL 141 (286)
T ss_pred HHHHHCCCCEEEEEeccCCH----HHHhc-CCEEEEecCCHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 99999999999998876443 45654 999999999999999999999999999999987765
No 27
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.5e-34 Score=286.44 Aligned_cols=227 Identities=21% Similarity=0.275 Sum_probs=169.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+++|+++...+++
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHc--------CCcEEEEcCCCCccCCCceeecccccccC---CchhHH
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--------GLKVLCATGAGARADPTRIRVADLRESTN---DPLSRA 234 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~--------~ip~I~~~g~g~~~dp~~i~i~di~~~~~---dpl~~~ 234 (448)
.+ .+++.+ +|+||+|+||+++|.++++.|.+. ++|+|+++..|.++. .++.++....+.. |+.+..
T Consensus 81 ~~-~~f~~~-fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~-v~vi~P~~t~C~~C~~d~~p~~ 157 (291)
T cd01488 81 KD-EEFYRQ-FNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGH-ARVILPGITACIECSLDLFPPQ 157 (291)
T ss_pred hh-HHHhcC-CCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEE-EEEEcCCCCCccccCCCCCCCC
Confidence 43 567765 999999999999999999998664 599999988776553 2445555543332 322221
Q ss_pred HHHHhh--------hhcCccCCceEEecCCCccccCCCCCCCCC----CC---------CCCCCCcccCCCcccccCccc
Q 013156 235 VRHRLR--------KDYGIEGGIPVVFSLEKPKAKLLPFTGPSG----ED---------ENPSDYQMVPGFRVRIIPVLG 293 (448)
Q Consensus 235 ~r~~l~--------~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~pvlg 293 (448)
....+. ..+.+.-...+.|+.|.|...+-+...+.. +. -....+....++..+++|+++
T Consensus 158 ~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~ 237 (291)
T cd01488 158 VTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVA 237 (291)
T ss_pred CCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccC
Confidence 111111 113333334455665555432211110000 00 001234456677889999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCC
Q 013156 294 SIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 294 ~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
++++||++++++|++|.+++..
T Consensus 238 stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 238 STNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999853
No 28
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=2.6e-34 Score=289.22 Aligned_cols=204 Identities=14% Similarity=0.065 Sum_probs=166.7
Q ss_pred ccchhHHHHHHhhhhHhc---cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccccccc
Q 013156 56 DLLKDEVVAEQLTRNIQF---FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT 131 (448)
Q Consensus 56 ~~~~~e~~~e~~~Rq~~~---~G-~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~ 131 (448)
++.++++ +||+||+.+ || +++|++|++++|+ |||+||.++.+|++ |||+|+|+|+|.|+.|||+ ++|+
T Consensus 46 ~l~~~~~--~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~ 117 (318)
T TIGR03603 46 TLTKFNL--ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYS 117 (318)
T ss_pred ccCHHHH--HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhC
Confidence 4556666 899999987 55 5589999999999 99999999999999 9999999999999999999 8999
Q ss_pred CCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHH--HHHHHHHcCCcEEEEcCC
Q 013156 132 RADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA--LLAACVRRGLKVLCATGA 209 (448)
Q Consensus 132 ~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~--l~~~c~~~~ip~I~~~g~ 209 (448)
.+|||++|+++++++|.++||.++|+. ..+++.+ +|+||||+||+.+|+. +|++|.++++|+|+++.
T Consensus 118 ~~diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~-~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav- 186 (318)
T TIGR03603 118 KEFILKKDIRDLTSNLDALELTKNVDE---------LKDLLKD-YNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFI- 186 (318)
T ss_pred hhhcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCC-CCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEE-
Confidence 999999999999999999999999975 3466765 9999999999999976 99999999999998764
Q ss_pred CCccCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCC-------CCCCCCCCCCcccC
Q 013156 210 GARADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGP-------SGEDENPSDYQMVP 282 (448)
Q Consensus 210 g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~-------~~~~~~~~~~~~~~ 282 (448)
.|+.|++-+++++++||++|+ ++.. ......+......
T Consensus 187 ---------------------------------~g~~Gqv~~~~P~~t~C~~Cl-~~r~~~~~~~~~~~~~~~~~~~~~- 231 (318)
T TIGR03603 187 ---------------------------------DGPFVFITCTLPPETGCFECL-ERRLLSRLDWRLYGVFTEYLVKAE- 231 (318)
T ss_pred ---------------------------------ccCEEEEEEEeCCCCCcHHHc-cchhhcccccccccccccccCCCC-
Confidence 345566666777789999998 2200 0000000000001
Q ss_pred CCcccccCcccchHHHHHHHHHHHHHHHHHcCC
Q 013156 283 GFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 283 ~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
-.+...||+||+++++|+++|+|++ .++|..
T Consensus 232 -~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g 262 (318)
T TIGR03603 232 -NNVSTAELIFPLLNIKKNLVVSEIF-AIGSLG 262 (318)
T ss_pred -CCCccCCeehhHHHHHHHHHHHHHH-HHhCCC
Confidence 1355679999999999999999999 988863
No 29
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=100.00 E-value=1.6e-32 Score=259.58 Aligned_cols=190 Identities=27% Similarity=0.360 Sum_probs=155.7
Q ss_pred hccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC
Q 013156 72 QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 72 ~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in 151 (448)
..+|+++|++|++++|+||||||+||++|++|+++||++|+|+|+|.|+++||+||+ |..+|+|++|+++++++++++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999999999999999999999999999999997 5778999999999999999999
Q ss_pred CCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHc--CCcEEEEcCCCCccCCCceeecccccccCC
Q 013156 152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--GLKVLCATGAGARADPTRIRVADLRESTND 229 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~--~ip~I~~~g~g~~~dp~~i~i~di~~~~~d 229 (448)
|+++++++...++.++..+++.+ +|+||+|+||+++|..+++.|.+. ..++++++|.++..++..++
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~-~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~~---------- 156 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKD-ADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSIK---------- 156 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceEE----------
Confidence 99999999999999888888875 999999999999999877666554 56778877776554332111
Q ss_pred chhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHH
Q 013156 230 PLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVT 309 (448)
Q Consensus 230 pl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~ 309 (448)
......+||.|-..+. + .+...|+++|.++++|+++|+++|+
T Consensus 157 ----------------------~~~~~~~~~~~~~~~~---~-------------~~~~~g~~~p~v~~~a~~qa~~~l~ 198 (200)
T TIGR02354 157 ----------------------TRKISKHFYLCGDGKS---D-------------AKQGLGLMAPRVQICAAHQANLVLE 198 (200)
T ss_pred ----------------------ecccCCCEEEcCCCCC---c-------------ccCCCCCchhHHHHHHHHHHHHHHH
Confidence 1112244555521110 0 1234599999999999999999998
Q ss_pred HH
Q 013156 310 QL 311 (448)
Q Consensus 310 ~l 311 (448)
++
T Consensus 199 ~~ 200 (200)
T TIGR02354 199 LI 200 (200)
T ss_pred hC
Confidence 74
No 30
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.6e-32 Score=309.55 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=172.9
Q ss_pred HHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCC-----ceEEEEeCCccccccccccccccCCccCCh
Q 013156 64 AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTP 138 (448)
Q Consensus 64 ~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~diG~~ 138 (448)
.+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.|+.||||||++|+.+|||++
T Consensus 399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~ 478 (1008)
T TIGR01408 399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP 478 (1008)
T ss_pred hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcH
Confidence 489999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCceEEEEeccCCccch----HHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 139 KALCLKKHFSSIFPECHIDAKVLLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 139 Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~----~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
|+++++++++++||+++|+++...+++++. .+++.+ +|+||+|+||+++|.++++.|+.+++|+|+++..
T Consensus 479 Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~-~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~----- 552 (1008)
T TIGR01408 479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK-LDVVINALDNVEARRYVDSRCLAFLKPLLESGTL----- 552 (1008)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecc-----
Confidence 999999999999999999999998876432 355654 9999999999999999999999999999998864
Q ss_pred CCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccc
Q 013156 215 PTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294 (448)
Q Consensus 215 p~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~ 294 (448)
|+.|++.++.+..+.|+.|-+.+.+ + .+|-|+.+..|.
T Consensus 553 -----------------------------G~~G~v~v~ip~~te~y~~~~d~~~---~-------~~P~Ctl~~~P~--- 590 (1008)
T TIGR01408 553 -----------------------------GTKGNTQVVVPHLTESYGSSRDPPE---K-------EIPFCTLKSFPA--- 590 (1008)
T ss_pred -----------------------------CceeeEEEEeCCCcCCCCCCCCCCC---C-------CCCcccccCCCC---
Confidence 4556677777766667776542211 1 245566666666
Q ss_pred hHHHHHHHHHHHHHHHHHcCC
Q 013156 295 IPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 295 ~~~i~G~~~A~~vl~~l~g~~ 315 (448)
.......+|.+....+++.+
T Consensus 591 -~~~h~i~wa~~~f~~~F~~~ 610 (1008)
T TIGR01408 591 -AIEHTIQWARDKFEGLFSHK 610 (1008)
T ss_pred -CchHHHHHHHHHHHHHHHhh
Confidence 34455667888888888865
No 31
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=8.9e-32 Score=259.80 Aligned_cols=212 Identities=19% Similarity=0.263 Sum_probs=163.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|||+||+||+++++|+++|||+|+|+|+|.|++||||||++|+.+|+|++|+++++++++++||+++|+++...++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred cc--hHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHHHHHhhhhc
Q 013156 166 SS--EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVRHRLRKDY 243 (448)
Q Consensus 166 ~~--~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~ 243 (448)
++ ..+++.+ +|+||+|+||+++|..++++|+++++|+|+++. .
T Consensus 81 ~~~~~~~f~~~-~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~----------------------------------~ 125 (234)
T cd01484 81 EQDFNDTFFEQ-FHIIVNALDNIIARRYVNGMLIFLIVPLIESGT----------------------------------E 125 (234)
T ss_pred hhhchHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc----------------------------------c
Confidence 33 2456665 999999999999999999999999999999875 4
Q ss_pred CccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 013156 244 GIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVN 323 (448)
Q Consensus 244 g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~~~~~~~~~ 323 (448)
|+.|++.++.+..++|+.|.+.+.+ + .+|.++.+..|.. .......|.++.-
T Consensus 126 G~~G~v~vi~p~~t~c~~C~~~~~~---~-------~~p~Cti~~~P~~----~~hci~~a~~~~~-------------- 177 (234)
T cd01484 126 GFKGNAQVILPGMTECIECTLYPPQ---K-------NFPMCTIASMPRL----PEHCIEWARMLQW-------------- 177 (234)
T ss_pred CCceEEEEEcCCCCCCcccCCCCCC---C-------CCCccccCCCCCC----chHHHHHHHHHHh--------------
Confidence 5567777788888899999853221 1 2455666666663 3334444555442
Q ss_pred ccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHHH
Q 013156 324 MDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKEL 364 (448)
Q Consensus 324 ~~~~~y~~~~~~l~~~~~~~~g~~~~ipi~~~DV~yLveEv 364 (448)
-+..+.+.++..=..+ .+.|+.. +++..++.-++..+
T Consensus 178 d~~~~~~~i~~~a~~r-a~~~~i~---~~~~~~~~~i~~~i 214 (234)
T cd01484 178 DDPEHIQFIFQASNER-ASQYNIR---GVTYFLTKGVAGRI 214 (234)
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCC---CcCHHHHHHHhcCe
Confidence 1444555555443333 2234432 35666666666544
No 32
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=3.1e-32 Score=252.30 Aligned_cols=171 Identities=29% Similarity=0.386 Sum_probs=143.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|+||||+||+++++|+++||++|+|+|+|.|+++||+||++ ..+|+|++|+++++++++++||+++++++...++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 56899999999999999999999999999999988
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceeecccccccCCchhHHHHHHhhhhcC
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVRHRLRKDYG 244 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~-~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g 244 (448)
++..+++.+ +|+||+|+||+++|..+++.|.++ ++|+|++++.++.
T Consensus 80 ~~~~~~l~~-~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~-------------------------------- 126 (174)
T cd01487 80 NNLEGLFGD-CDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGF-------------------------------- 126 (174)
T ss_pred hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhcc--------------------------------
Confidence 888888886 999999999999999888887777 9999998776542
Q ss_pred ccCCceEEecCC--CccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHH
Q 013156 245 IEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308 (448)
Q Consensus 245 ~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl 308 (448)
+++..+.+.+ .+|+.|++...+ .+...|++||+++++|+++|+|+|
T Consensus 127 --~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 127 --GDSNNIKTKKISDNFYICGDLVNE----------------AKEGLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred --CCeEEEEecCCCCCeEEeecCCCC----------------CCCCcCccccHHHHHHHHHHHhhC
Confidence 2222222222 467777621110 013569999999999999999985
No 33
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=5e-32 Score=288.68 Aligned_cols=208 Identities=20% Similarity=0.227 Sum_probs=159.8
Q ss_pred ccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCcc---CChHHHHHHHHhhh
Q 013156 73 FFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSS 149 (448)
Q Consensus 73 ~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~di---G~~Kv~~~~~~l~~ 149 (448)
++.+-+.++|++++|+||||||+||++|++|+++|||+|+|||+|.|+.||||||++|+.+|+ |++||++++++|++
T Consensus 327 llP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~ 406 (664)
T TIGR01381 327 LHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKR 406 (664)
T ss_pred cCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHH
Confidence 344556699999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCceEEEEeccC-------Cc----------cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013156 150 IFPECHIDAKVLLY-------DA----------SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR 212 (448)
Q Consensus 150 inP~v~v~~~~~~~-------~~----------~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~ 212 (448)
+||+++++++...+ ++ +++.+++.+ +|+||||+||+++|..++.+|..+++|+|+++ .|..
T Consensus 407 InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~-~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfd 484 (664)
T TIGR01381 407 IFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD-HDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFD 484 (664)
T ss_pred HCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccc
Confidence 99999999988763 43 355677775 99999999999999999999999999999974 4431
Q ss_pred cCCCceeecccccccCCchhHHHHHHhhhhcCccCC----c----eEEecCCCccccCCCCCCCCCC-CCCCCCCcccCC
Q 013156 213 ADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGG----I----PVVFSLEKPKAKLLPFTGPSGE-DENPSDYQMVPG 283 (448)
Q Consensus 213 ~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~----i----~~v~s~e~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 283 (448)
+ .+.+- +|...+ - +..-....+||.|.....+... .....+
T Consensus 485 g---~lvmr---------------------hG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlD------ 534 (664)
T TIGR01381 485 S---YVVMR---------------------HGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLD------ 534 (664)
T ss_pred e---EEEEE---------------------ecccccccccccccccccCCCCCCccccCCCCCCCccccccccc------
Confidence 1 11000 111100 0 0000124678888733222111 111111
Q ss_pred CcccccCcccchHHHHHHHHHHHHHHHHHcCC
Q 013156 284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 284 ~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
..|. |++|..+++|+++|.|+|+.|+.+|
T Consensus 535 qqCt---VtrPgv~~ias~~AvEll~~llqhp 563 (664)
T TIGR01381 535 QQCT---VTRPGTAMIASGLAVELLVSVLQHP 563 (664)
T ss_pred ccce---EecchHHHHHHHHHHHHHHHHhcCC
Confidence 1232 8999999999999999999999987
No 34
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=5.1e-31 Score=263.87 Aligned_cols=128 Identities=24% Similarity=0.403 Sum_probs=118.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|||++|+++++++++++||+++|+++...++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred c-chHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 166 S-SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 166 ~-~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
. ...+++.+ +|+||+|.||.++|..++++|+.+++|+|+++..|.++.
T Consensus 81 ~~~~~~f~~~-~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~ 129 (312)
T cd01489 81 PDFNVEFFKQ-FDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQ 129 (312)
T ss_pred ccchHHHHhc-CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeE
Confidence 3 33467765 999999999999999999999999999999987776543
No 35
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=272.16 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=221.3
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceE
Q 013156 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI 156 (448)
Q Consensus 77 e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v 156 (448)
+-++.++++|||||||||+||+++++|+++|+++|+|||.|+|++|||||||||+.++||++|+.++++.+++.||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCccc-hHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHH
Q 013156 157 DAKVLLYDASS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235 (448)
Q Consensus 157 ~~~~~~~~~~~-~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~ 235 (448)
.+++..+.+.. .-+++. +||+|++|.||.++|.++|+.|.....|+|.+|.
T Consensus 85 ~~yhanI~e~~fnv~ff~-qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt--------------------------- 136 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFR-QFDIVLNALDNLAARRYVNRMCLAASVPLIESGT--------------------------- 136 (603)
T ss_pred EeccccccCcchHHHHHH-HHHHHHHhhccHHHHHHHHHHHHhhcCCceecCc---------------------------
Confidence 99998876653 344555 5999999999999999999999999999999875
Q ss_pred HHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHH-HHHHHHHcC
Q 013156 236 RHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMAS-HVVTQLAER 314 (448)
Q Consensus 236 r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~-~vl~~l~g~ 314 (448)
.|+.||+.++..+.+-||.|.|-+. |. .+|.|++|..|+ --+....+|. ++++.|+|-
T Consensus 137 -------~Gf~GQv~~ii~GkTECyeC~pK~~-------~k---TypvCTIRstPS----~~iHCIVWAK~~lF~qlF~~ 195 (603)
T KOG2013|consen 137 -------GGFLGQVQVIIKGKTECYECIPKPV-------PK---TYPVCTIRSTPS----EPIHCIVWAKHYLFNQLFGE 195 (603)
T ss_pred -------ccccceEEEEecCCcceecccCCCC-------CC---cCCceEeecCCC----CceeeeeehHhHHHHHHhcc
Confidence 4677999988888888999986332 22 478899888777 5566666776 999999986
Q ss_pred CCC--CCccccccHHHH-HH---HHHH------HhhhHHh----hhCCC---Ccc--ccCHHHHHHH--HHHHhcCCCcC
Q 013156 315 QVQ--TEPIVNMDVDHY-RL---LHQR------LTEHEES----LYGTA---KEV--QVDVEEVMYV--AKELWHGRSAW 371 (448)
Q Consensus 315 ~~~--~~~~~~~~~~~y-~~---~~~~------l~~~~~~----~~g~~---~~i--pi~~~DV~yL--veEvwrgrS~~ 371 (448)
.-+ .....+.+.+.- +. .... +..+.++ ..+.+ ..+ -+=..||.|| ++++|+-||.=
T Consensus 196 d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p 275 (603)
T KOG2013|consen 196 DDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRP 275 (603)
T ss_pred ccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCC
Confidence 322 111111111111 11 0000 1110000 01111 011 1334788888 57999999864
Q ss_pred CCCcc----ccCCccccccCceEEeecC-CCCCCCCCcEEEeCHHHHHHHhhccc---h----hhhcchhHHHHHHHHHH
Q 013156 372 EHSAK----DVGRGMWRSVNELMLVRWD-REKPATVSNLVLLKFKEADEHESRTL---D----DIKEKEPAFFERVTSVL 439 (448)
Q Consensus 372 s~~~~----~~~~~~~~~~~~L~l~RWd-~~~p~~~~NlVllt~~Ea~~He~~~~---~----~~~~~~~~~~~~v~~~~ 439 (448)
.+..- .++...-.+.....+.-|. +..=|+++|....-..+-++-.-+.. . ..++.++.+.+.|.+-+
T Consensus 276 ~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaa 355 (603)
T KOG2013|consen 276 VPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAA 355 (603)
T ss_pred CCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHh
Confidence 44310 0111111111223344554 55568888888877777766643221 1 24556778888887654
No 36
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=1e-30 Score=231.94 Aligned_cols=128 Identities=38% Similarity=0.551 Sum_probs=118.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
|+++|+|+|+||+||+++++|+++||++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
++.++..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|.
T Consensus 81 ~~~~~~~~~~~~-~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 81 IDEENIEELLKD-YDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp CSHHHHHHHHHT-SSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred cccccccccccC-CCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 988888888875 999999999999999999999999999999987654
No 37
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=7.1e-30 Score=264.77 Aligned_cols=181 Identities=22% Similarity=0.284 Sum_probs=153.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-----ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+|+||||||+||+++++|+++|| |+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccch----HHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHHH
Q 013156 161 LLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVR 236 (448)
Q Consensus 161 ~~~~~~~~----~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r 236 (448)
..+++++. .+++.+ +|+||+|.||+++|..+++.|+.+++|+|+++..
T Consensus 81 ~~v~~~~~~~~~~~f~~~-~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~--------------------------- 132 (435)
T cd01490 81 NRVGPETEHIFNDEFWEK-LDGVANALDNVDARMYVDRRCVYYRKPLLESGTL--------------------------- 132 (435)
T ss_pred cccChhhhhhhhHHHhcC-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc---------------------------
Confidence 88876544 355654 9999999999999999999999999999999865
Q ss_pred HHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHHHHHcCC
Q 013156 237 HRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315 (448)
Q Consensus 237 ~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~~ 315 (448)
|..|++.++.+..++|+.|.+.+. ++ ..|-|.++..|. ........|.+....+++.+
T Consensus 133 -------G~~G~v~v~iP~~te~y~~~~~p~---~~-------~~P~Ctl~~~P~----~~eHcI~wA~~~F~~lF~~~ 190 (435)
T cd01490 133 -------GTKGNTQVVIPHLTESYSSSRDPP---EK-------SIPLCTLKNFPN----AIEHTIQWARDEFEGLFKQP 190 (435)
T ss_pred -------cceeEEEEEeCCCCCCccCCCCCC---CC-------CCCCccccCCCC----CchHHHHHHHHHHHHHhccc
Confidence 445677778877788888863221 11 245566666665 45566678888888888875
No 38
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.96 E-value=5.8e-30 Score=266.17 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=136.0
Q ss_pred HHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHH
Q 013156 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~ 144 (448)
+|||||+++||.+||++|++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++|+++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCceEEEEeccCCc--cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 145 KHFSSIFPECHIDAKVLLYDA--SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~~~--~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
++|+++||+++++.+.+..+. ++..+++.+ +|+||+|.++......|+++|+++++|+|.+.+.|.
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~-fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~ 148 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQ-FTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGL 148 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccC
Confidence 999999999999998876543 234566765 999999999999999999999999999999988876
No 39
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=2.2e-28 Score=241.59 Aligned_cols=121 Identities=26% Similarity=0.340 Sum_probs=112.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCc--cCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD--VGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d--iG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+|+||||||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999887543
Q ss_pred -----------------CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 164 -----------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 -----------------~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+.+++.+++.+ +|+||||+||+++|..++.+|..+++|+|+++
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~-~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKD-HDVIFLLTDSRESRWLPTLLSAAKNKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 33456677875 99999999999999999999999999999853
No 40
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.96 E-value=8.4e-29 Score=221.45 Aligned_cols=127 Identities=39% Similarity=0.633 Sum_probs=119.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+||||||+||+++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA 213 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~ 213 (448)
.+..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|..+
T Consensus 81 ~~~~~~~~~-~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 81 DNLDDFLDG-VDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 666667765 99999999999999999999999999999999876443
No 41
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=243.62 Aligned_cols=153 Identities=21% Similarity=0.345 Sum_probs=141.1
Q ss_pred cccchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCc
Q 013156 55 LDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD 134 (448)
Q Consensus 55 ~~~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d 134 (448)
..+.++|. ..|+|||++||.++|++|+++||+|+|.+|+|++++++|+.+|||+++++|+-.|++.+++-|||+..++
T Consensus 4 ~else~E~--alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~ 81 (331)
T KOG2014|consen 4 EELSEQEI--ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASS 81 (331)
T ss_pred hhhhHHHH--HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhh
Confidence 35677777 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 135 VGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 135 iG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
+|+.|+++..++++.+||.++|....+.+...+ ++++. +||+||-.-.+.+.+..+|..|++++++|+.+...|.
T Consensus 82 vg~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~-qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~ 156 (331)
T KOG2014|consen 82 VGQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFT-QFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGL 156 (331)
T ss_pred hchHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhh-ceeEEEEeccchhhhhhHHHHHHhcCceEEeccccce
Confidence 999999999999999999999998877766544 56666 4999999888999999999999999999999776664
No 42
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=7e-29 Score=280.19 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=135.3
Q ss_pred HHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHH
Q 013156 64 AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL 143 (448)
Q Consensus 64 ~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~ 143 (448)
+++|+||+++||.++|++|++++|+|+||||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|++++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~ 83 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAV 83 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcC--CcEEEEcCCCC
Q 013156 144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLCATGAGA 211 (448)
Q Consensus 144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~--ip~I~~~g~g~ 211 (448)
+++|+++||+|+|+++...++. +++.+ +|+||+|.++.+.+..||++|++++ +|+|+++..|.
T Consensus 84 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~-fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~ 148 (1008)
T TIGR01408 84 VKKLAELNPYVHVSSSSVPFNE----EFLDK-FQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGL 148 (1008)
T ss_pred HHHHHHHCCCceEEEecccCCH----HHHcC-CCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecce
Confidence 9999999999999999876653 46665 9999999999999999999999999 99999886664
No 43
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.95 E-value=2.3e-27 Score=229.89 Aligned_cols=196 Identities=24% Similarity=0.284 Sum_probs=146.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCC-----c-----eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGV-----G-----RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGV-----g-----~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in 151 (448)
-+.++|+||||||+||+++++|+|+|+ | +|+|+|+|.|++||||||. |..+|||++|++++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 378999999999999999999999973 4 9999999999999999994 6789999999999999999998
Q ss_pred CCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH--c-CCcEEEEcCCCCccCCCceeecccccccC
Q 013156 152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--R-GLKVLCATGAGARADPTRIRVADLRESTN 228 (448)
Q Consensus 152 P~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~--~-~ip~I~~~g~g~~~dp~~i~i~di~~~~~ 228 (448)
.++|+++...++.+ +++. ++|+||||+||+++|..|++.|.+ . ++|+++++ .+.+|+++.++++.++.
T Consensus 88 -~~~i~a~~~~~~~~---~~~~-~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~G---n~~~~gqv~~g~i~~~~- 158 (244)
T TIGR03736 88 -GTDWTAHPERVERS---STLH-RPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLG---NRADDGQVILGQVPSRA- 158 (244)
T ss_pred -CceEEEEEeeeCch---hhhc-CCCEEEECCCCHHHHHHHHHHHHHhcccccceeccc---CCCCCCcEEEEeccccc-
Confidence 89999999888773 2344 499999999999999999999988 2 47777654 58899999999996542
Q ss_pred CchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHH
Q 013156 229 DPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308 (448)
Q Consensus 229 dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl 308 (448)
.+...+++|.-+-++.+.-.+.++.++..|+ |...-++-+..-.+..++|+.+.
T Consensus 159 -----------------k~~~~~~lP~vte~y~~~~d~~~~~~~~~Ps---------Csla~al~~Q~l~iN~~~a~~~~ 212 (244)
T TIGR03736 159 -----------------KGENRLRLPHVGELFPELIDPSVDPDDDRPS---------CSLAEALAKQSLFINQAIAVFAM 212 (244)
T ss_pred -----------------ccCCceecCCchhhCcccccCccCCCCCCCC---------chHHHHhcCchhHHHHHHHHHHH
Confidence 1333455544333444331221111222232 23334555556666666776666
Q ss_pred HHHHc
Q 013156 309 TQLAE 313 (448)
Q Consensus 309 ~~l~g 313 (448)
.+|-.
T Consensus 213 ~~L~~ 217 (244)
T TIGR03736 213 NLLWK 217 (244)
T ss_pred HHHHH
Confidence 66543
No 44
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=3.8e-27 Score=225.62 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=109.6
Q ss_pred hhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCCh
Q 013156 59 KDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP 138 (448)
Q Consensus 59 ~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~ 138 (448)
++|. +||+||+++||.++|++|++++|+|||+||+|+++++||+++|||+|+|+|+|.|+.+||+||++++. |+|++
T Consensus 3 ~~E~--~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~ 79 (287)
T PTZ00245 3 DAEA--VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGT 79 (287)
T ss_pred HHHH--HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCc
Confidence 3444 89999999999999999999999999999999999999999999999999999999999999999987 78999
Q ss_pred HHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHH
Q 013156 139 KALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDT 188 (448)
Q Consensus 139 Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~ 188 (448)
|+++++++++++||.++|+++...++.++ +|++||-|.-+.+.
T Consensus 80 KAeaAa~~L~eLNP~V~V~~i~~rld~~n-------~fqvvV~~~~~le~ 122 (287)
T PTZ00245 80 RGARALGALQRLNPHVSVYDAVTKLDGSS-------GTRVTMAAVITEED 122 (287)
T ss_pred HHHHHHHHHHHHCCCcEEEEcccccCCcC-------CceEEEEEcccHHH
Confidence 99999999999999999999988887654 48888877665443
No 45
>PRK06153 hypothetical protein; Provisional
Probab=99.94 E-value=5.8e-27 Score=238.13 Aligned_cols=128 Identities=21% Similarity=0.294 Sum_probs=118.0
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccc-cccCCccCC--hHHHHHHHHhhhhCCC
Q 013156 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA-VATRADVGT--PKALCLKKHFSSIFPE 153 (448)
Q Consensus 77 e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~-l~~~~diG~--~Kv~~~~~~l~~inP~ 153 (448)
+.|++|++++|+||||||+||+++.+|+|+||++|+|||+|.|++||||||. +++.+|+|+ +||+++++++.++||
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~- 247 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR- 247 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence 5699999999999999999999999999999999999999999999999998 568899999 999999999999998
Q ss_pred ceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
+|.++...+++++.. .+.+ +|+||+|+|+.++|..|+++|.+++||+|+++.
T Consensus 248 -~I~~~~~~I~~~n~~-~L~~-~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 248 -GIVPHPEYIDEDNVD-ELDG-FTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred -eEEEEeecCCHHHHH-HhcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 567778888887765 4554 999999999999999999999999999999653
No 46
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-26 Score=222.89 Aligned_cols=152 Identities=21% Similarity=0.358 Sum_probs=130.1
Q ss_pred CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCc
Q 013156 75 GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 75 G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v 154 (448)
++|..+-|.+.+|+|+|+||+||++.++|+.+|++.+.+||.|+++.+||||||+|+++|||+||++++++.+.+..|.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH---cC-------CcEEEEcCCCCccCCCceeecccc
Q 013156 155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR---RG-------LKVLCATGAGARADPTRIRVADLR 224 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~---~~-------ip~I~~~g~g~~~dp~~i~i~di~ 224 (448)
.|..+..+++... .++.. +||+||.+.|++..|.+||....+ .| ||+|++|..|.|+.. |+.+.-+.
T Consensus 111 ~v~~h~~kIqd~~-~~FYk-~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~a-rvI~Pg~T 187 (422)
T KOG2015|consen 111 VVVPHRQKIQDKP-ISFYK-RFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHA-RVIYPGIT 187 (422)
T ss_pred EEeeeecchhcCC-HHHHh-hhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCccccccee-EEEecCcc
Confidence 9999988876544 34555 499999999999999999976554 23 799999887777653 34444444
Q ss_pred cccCC
Q 013156 225 ESTND 229 (448)
Q Consensus 225 ~~~~d 229 (448)
.+.+|
T Consensus 188 aCieC 192 (422)
T KOG2015|consen 188 ACIEC 192 (422)
T ss_pred HHHHh
Confidence 44444
No 47
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=215.98 Aligned_cols=219 Identities=23% Similarity=0.351 Sum_probs=174.7
Q ss_pred cchhHHHHHHhhhhHhc--cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCC
Q 013156 57 LLKDEVVAEQLTRNIQF--FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~--~G-~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~ 133 (448)
+..+=...+-|+|-+.+ +| .+..+|++...|.|||.|||||-+|.+|.|+|+|++.|+|.|.|++.|+||-| |+++
T Consensus 52 lSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~ 130 (422)
T KOG2336|consen 52 LSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPD 130 (422)
T ss_pred hhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcc
Confidence 33333344678887765 34 36789999999999999999999999999999999999999999999999986 6899
Q ss_pred ccCChHHHHHHHHhhhhCCCceEEEEeccCC-ccchHHHhc---------C-CCCEEEEccCChHHHHHHHHHHHHcCCc
Q 013156 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYD-ASSEEEILS---------G-HPDFVLDCIDNIDTKVALLAACVRRGLK 202 (448)
Q Consensus 134 diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~-~~~~~~ll~---------~-~~D~Vida~Dn~~~r~~l~~~c~~~~ip 202 (448)
..|.+|++++.+.|..+||++.++.++..++ -+|.+.+.. + ..|+|+.|.||+++|..+|.+|.+.+..
T Consensus 131 QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 131 QAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred cccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999988775 366666542 2 4899999999999999999999999998
Q ss_pred EEEEcCCCCccCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCCCC-CCCCCCCCCCCCccc
Q 013156 203 VLCATGAGARADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFT-GPSGEDENPSDYQMV 281 (448)
Q Consensus 203 ~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~-~~~~~~~~~~~~~~~ 281 (448)
|+.++-. ...+.|+|..+.++|+.|+.|.|-- -..+.++...
T Consensus 211 WmESGVS--------------------------------EnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTL----- 253 (422)
T KOG2336|consen 211 WMESGVS--------------------------------ENAVSGHIQLIVPGETACFACAPPLVVASGIDERTL----- 253 (422)
T ss_pred HHHccCc--------------------------------cccccceeEEecCCccceecccCceeeecCcchhhh-----
Confidence 8887643 1456788999999999999998531 1111110000
Q ss_pred CCCcccccCcccchHHHHHHHHHHHHHHHHHcC
Q 013156 282 PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 282 ~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
..- --...+|.++-+++.+++.+.+||+|+..
T Consensus 254 KRe-GVCAASLPTTMgvvAG~LVqN~LK~LLNF 285 (422)
T KOG2336|consen 254 KRE-GVCAASLPTTMGVVAGFLVQNSLKFLLNF 285 (422)
T ss_pred hhc-ceeeecCcchHHHHHHHHHHHHHHHHhhc
Confidence 000 01235677888999999999999999875
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=231.92 Aligned_cols=149 Identities=24% Similarity=0.376 Sum_probs=139.6
Q ss_pred HHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCC-----ceEEEEeCCccccccccccccccCCccCChH
Q 013156 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPK 139 (448)
Q Consensus 65 e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~diG~~K 139 (448)
.||+-|++.||..-|+||.+.++.+||+|.+||+.++|++..|| |+|++.|+|.+|.|||||||||+..|||++|
T Consensus 411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~K 490 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPK 490 (1013)
T ss_pred CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchH
Confidence 59999999999999999999999999999999999999999999 4799999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCceEEEEeccCCccc----hHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 140 ALCLKKHFSSIFPECHIDAKVLLYDASS----EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~----~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
++++++....+||+++|+++..++.++. .++++. +.|+|.+|.||.++|.++.+-|.-+.+|++.+|..|+|++
T Consensus 491 Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~-~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn 568 (1013)
T KOG2012|consen 491 SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFE-NLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN 568 (1013)
T ss_pred HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHh-hhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc
Confidence 9999999999999999999999987754 245555 5999999999999999999999999999999999887754
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-21 Score=210.28 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=139.1
Q ss_pred cchhHHHHHHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccC
Q 013156 57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG 136 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG 136 (448)
-.+.++-+..|+||+..+|.++++++..++|+|.|+||+|-+||+||+.+||+++||.|...+.+++|..|++.+++|||
T Consensus 10 ~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Dig 89 (1013)
T KOG2012|consen 10 SASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIG 89 (1013)
T ss_pred cchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcC
Confidence 33556666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
++++++..++|+++|+.|.|.+++..++ .+++.+ |++||-+-.+......|+++||+++|.+|.+..-|-
T Consensus 90 knRA~as~~~LaeLN~yV~V~v~t~~~~----~e~L~~-FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGL 159 (1013)
T KOG2012|consen 90 KNRAEASVEKLAELNNYVPVVVLTGPLT----EEFLSD-FQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGL 159 (1013)
T ss_pred CchHHHHHHHHHHhhcceeeEEecCccc----HHHHhC-CcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchh
Confidence 9999999999999999999999887665 467775 999999999999999999999999999999887664
No 50
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.1e-19 Score=182.05 Aligned_cols=146 Identities=17% Similarity=0.208 Sum_probs=129.3
Q ss_pred HHhhhhHhccCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHH
Q 013156 65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144 (448)
Q Consensus 65 e~~~Rq~~~~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~ 144 (448)
.+|+||+++||++||..|..++|+++|||.+||+++++|+..|||.|+++|...|+.+++.-+|+...+++|++||++..
T Consensus 8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~ 87 (523)
T KOG2016|consen 8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATL 87 (523)
T ss_pred hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCceEEEEeccC--CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 145 KHFSSIFPECHIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 145 ~~l~~inP~v~v~~~~~~~--~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
+.++++||.+.-....+.- ...+...++. +|++||-+--+-++...+.++|+.+++|++.+-..|-
T Consensus 88 e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~-qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl 155 (523)
T KOG2016|consen 88 EFLQELNPSVSGSFVEESPDFLIDNDPSFFS-QFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGL 155 (523)
T ss_pred HHHHHhChhhhcCccccChhhhhhcCchhhh-eeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecc
Confidence 9999999998766554431 1223334555 4999998888888899999999999999999765553
No 51
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.75 E-value=1.6e-17 Score=176.56 Aligned_cols=214 Identities=17% Similarity=0.198 Sum_probs=152.8
Q ss_pred cchhHHHHHHhhhhHhcc------CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccc
Q 013156 57 LLKDEVVAEQLTRNIQFF------GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVA 130 (448)
Q Consensus 57 ~~~~e~~~e~~~Rq~~~~------G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~ 130 (448)
+.+..+ |||+.||.|+ |.+..++.++++|+|+|.||+|++++.+|+++|+++|+.+|+|.+ ++|+||
T Consensus 98 L~~a~l--ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR---- 170 (637)
T TIGR03693 98 LESALL--DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR---- 170 (637)
T ss_pred CCHHHH--HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence 444444 9999999986 457778889999999999999999999999999999999999999 999999
Q ss_pred cCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCCh--HHHHHHHHHHHHcC---CcEEE
Q 013156 131 TRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG---LKVLC 205 (448)
Q Consensus 131 ~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~--~~r~~l~~~c~~~~---ip~I~ 205 (448)
||+. ++.+++ .||.++|+.++. -..+...+.+.+ +|+||..+|+. ..-.++|+.|.+.| +|++.
T Consensus 171 ----IgEl-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~-~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 ----IHEL-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEP-ADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred ----HHHH-HHHHHH----hCCCCceEeccC-CcchhHHHhhcC-CcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776 666665 999999998875 223455667775 99999999954 45678999999999 55555
Q ss_pred EcCCCCccCCCceeecccccccCCchhHHHHHHhhhhcCccCCceEEecCCCccccCCC--CCCCCCCCCCCCCCcccCC
Q 013156 206 ATGAGARADPTRIRVADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLP--FTGPSGEDENPSDYQMVPG 283 (448)
Q Consensus 206 ~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~--~~~~~~~~~~~~~~~~~~~ 283 (448)
++. .++.| |++-+..++|..|+- +....-.... +
T Consensus 240 ~G~----------------------------------~~liG--PlftPgkTGCWeCa~~RL~e~~L~~~~-------~- 275 (637)
T TIGR03693 240 LKQ----------------------------------VGLAG--PVFQQHGDECFEAAWHRLHESALHEEN-------S- 275 (637)
T ss_pred ccc----------------------------------ceeec--ceECCCCCcHHHHHHHHHHHHhcCCCC-------c-
Confidence 443 23445 666667778888841 1110000000 1
Q ss_pred CcccccCcccchHHHHHHHHHHHHHHHHHcC-C-CCCCccccccHHHHHHHHHHH
Q 013156 284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAER-Q-VQTEPIVNMDVDHYRLLHQRL 336 (448)
Q Consensus 284 ~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~-~-~~~~~~~~~~~~~y~~~~~~l 336 (448)
..++..+..++++.+++.|++|++++. + .....+...|....+..-+.+
T Consensus 276 ----s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~~WH~v 326 (637)
T TIGR03693 276 ----LAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEGGWHAF 326 (637)
T ss_pred ----ccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccccccccccC
Confidence 122223358899999999999999974 2 223344454555444433333
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.56 E-value=2.5e-14 Score=147.69 Aligned_cols=133 Identities=24% Similarity=0.297 Sum_probs=114.9
Q ss_pred cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCcc---CChHHHHHHHHhhhh
Q 013156 74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSSI 150 (448)
Q Consensus 74 ~G~e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~di---G~~Kv~~~~~~l~~i 150 (448)
...-..+++.+.++++.|+|.+||.||.+|...||.|||++|...|+.||=.||.+|+-+|. |++|+++++++|++|
T Consensus 330 vPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~I 409 (669)
T KOG2337|consen 330 VPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEI 409 (669)
T ss_pred cCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHh
Confidence 34456789999999999999999999999999999999999999999999999999999986 499999999999999
Q ss_pred CCCceEEEEeccC-------Ccc----------chHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 151 FPECHIDAKVLLY-------DAS----------SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 151 nP~v~v~~~~~~~-------~~~----------~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+|.++-..+...+ .++ .+++++.. .|+|+-.+|+-++|.+-.-+|...++-+|+++
T Consensus 410 fP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~-HDviFLLtDsRESRWLPtll~a~~~KivINaA 482 (669)
T KOG2337|consen 410 FPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKD-HDVIFLLTDSRESRWLPTLLAAAKNKIVINAA 482 (669)
T ss_pred CccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhh-cceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence 9999877665433 121 23345564 99999999999999988888888899899865
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.80 E-value=4.5e-08 Score=88.41 Aligned_cols=142 Identities=25% Similarity=0.345 Sum_probs=112.9
Q ss_pred CCcEEEEcCChHHHHHHHHHH---HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 84 GSYVVVIGLGGVGSHAAAMLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.-.|.++|||-+|--++..|. |-|..+|.++|...|++.++-...+ -+.+|.+|++.++ ++..-.+.-+|++++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 456999999999999999998 7799999999999999999754332 3589999999875 667777888999999
Q ss_pred ccCCccchHHHhcCCCCEEEEcc---CChHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCI---DNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~---Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~ 233 (448)
+.++.+|+..+. + |+|+-|+ |...+-..|.++|++.|+.-|+.+|.-+.+ -..+++.|+.+... |...
T Consensus 95 E~it~dNlhll~-g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGig-eEev~v~~~eeA~g-P~~~ 165 (217)
T COG4015 95 ENITKDNLHLLK-G--DVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIG-EEEVKVCDAEEAKG-PAKF 165 (217)
T ss_pred ccccccchhhhc-C--CEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecc-hhheEEeehhhcCc-cHHH
Confidence 999999976553 3 8888777 567778899999999999999988764322 24566667766544 4433
No 54
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.10 E-value=4.7e-05 Score=69.58 Aligned_cols=126 Identities=15% Similarity=0.216 Sum_probs=83.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++.+|+|||.|.+|...++.|...|. ++++|+.+..+. + .++ +. +....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~~--l-----------------------~~l-~~--i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICKE--M-----------------------KEL-PY--ITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCHH--H-----------------------Hhc-cC--cEEEe
Confidence 5789999999999999999999999996 699987663211 1 011 11 22223
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCC---CccCCCceeeccccc-----ccCCchh
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAG---ARADPTRIRVADLRE-----STNDPLS 232 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g---~~~dp~~i~i~di~~-----~~~dpl~ 232 (448)
..+.+.. +. .+|+||.|+|+.+....+...|+++ .++ +..... ...-|..++-+|+.- ....-++
T Consensus 61 ~~~~~~d----l~-~a~lViaaT~d~e~N~~i~~~a~~~-~~v-n~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la 133 (157)
T PRK06719 61 KTFSNDD----IK-DAHLIYAATNQHAVNMMVKQAAHDF-QWV-NVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFT 133 (157)
T ss_pred cccChhc----CC-CceEEEECCCCHHHHHHHHHHHHHC-CcE-EECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHH
Confidence 3344332 34 3999999999999999999999875 444 333222 233366666665533 2344567
Q ss_pred HHHHHHhhhh
Q 013156 233 RAVRHRLRKD 242 (448)
Q Consensus 233 ~~~r~~l~~~ 242 (448)
+.+|+++...
T Consensus 134 ~~lr~~ie~~ 143 (157)
T PRK06719 134 KRLKQELTSI 143 (157)
T ss_pred HHHHHHHHHH
Confidence 7788887763
No 55
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.09 E-value=4.1e-05 Score=72.76 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=63.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.+|...++.|...| .++++|+.+. .. .+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~-------------------~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE-------------------NLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH-------------------HHHHHHhCCCEEEEe
Confidence 478999999999999999999999999 6899987541 11 111111111232223
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEE
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
..+.. ..+.+ +|+||.||++.+....+.+.| +.++++-.
T Consensus 61 ~~~~~----~~l~~-adlViaaT~d~elN~~i~~~a-~~~~lvn~ 99 (202)
T PRK06718 61 KEFEP----SDIVD-AFLVIAATNDPRVNEQVKEDL-PENALFNV 99 (202)
T ss_pred cCCCh----hhcCC-ceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence 33332 22343 999999999999999999999 45675433
No 56
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=98.08 E-value=3.8e-05 Score=73.21 Aligned_cols=94 Identities=26% Similarity=0.362 Sum_probs=69.4
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|++++|+|||.|.+|..-+..|...|. ++++|+++.- +. +. .+.+. -+|+.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~------------------~~---l~-~l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE------------------SE---LT-LLAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------HH---HH-HHHHc---CCEEEEeC
Confidence 788999999999999999999999995 7999987631 00 01 11111 13444444
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+.. ..+.+ +|+||-|+++.+....+...|++.++|+-.+
T Consensus 61 ~~~~----~dl~~-~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 61 CFDA----DILEG-AFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred CCCH----HHhCC-cEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 4442 33454 9999999999999999999999999998443
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.04 E-value=2e-05 Score=78.82 Aligned_cols=77 Identities=31% Similarity=0.431 Sum_probs=60.4
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+...+|.+.+...
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~-- 183 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG-- 183 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec--
Confidence 567899999999999999999999999999998765 26889999998887776554332
Q ss_pred cCCccchHHHhcCCCCEEEEccC
Q 013156 162 LYDASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~D 184 (448)
++..+.+. ++|+||+||.
T Consensus 184 ----~~~~~~~~-~aDiVInaTp 201 (284)
T PRK12549 184 ----SDLAAALA-AADGLVHATP 201 (284)
T ss_pred ----cchHhhhC-CCCEEEECCc
Confidence 12233344 3999999974
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.95 E-value=5.5e-05 Score=78.42 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=68.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|+|+|||+||+.+|.+|++.|.++|++.|... + |...+.... -+ ++++..-...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~---~----------------~~~~i~~~~---~~--~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK---E----------------KCARIAELI---GG--KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH---H----------------HHHHHHhhc---cc--cceeEEeccc
Confidence 5799999999999999999999999999977542 1 111111111 11 4555444433
Q ss_pred -ccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 165 -ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 165 -~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+.+.+++.+ +|+||+|...+-.. .+.+.|.+.|+++++.+
T Consensus 58 d~~al~~li~~-~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 58 DVDALVALIKD-FDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred ChHHHHHHHhc-CCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 3345677776 89999999876655 77889999999999865
No 59
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.93 E-value=4.9e-05 Score=67.50 Aligned_cols=80 Identities=30% Similarity=0.414 Sum_probs=58.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|++++|+|+|+||.|..++.+|...|+++|+| .||.. .|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i----------~nRt~---------~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITI----------VNRTP---------ERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEE----------EESSH---------HHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEE----------EECCH---------HHHHHHHHHc----Ccccccee
Confidence 3689999999999999999999999999999999 45653 4777777766 44444443
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChH
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
.- +...+.+.. +|+||.|+....
T Consensus 65 ~~----~~~~~~~~~-~DivI~aT~~~~ 87 (135)
T PF01488_consen 65 PL----EDLEEALQE-ADIVINATPSGM 87 (135)
T ss_dssp EG----GGHCHHHHT-ESEEEE-SSTTS
T ss_pred eH----HHHHHHHhh-CCeEEEecCCCC
Confidence 32 223345554 999999998653
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.72 E-value=8.3e-05 Score=62.95 Aligned_cols=88 Identities=25% Similarity=0.393 Sum_probs=63.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++.+|+|||.|.+|..-+..|..+| .+++++..+. +... ..+++ ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~----------------------------~~i~~--~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE----------------------------GLIQL--IR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH----------------------------TSCEE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh----------------------------hHHHH--Hh
Confidence 478999999999999999999999999 7899998886 1000 11222 22
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
..+. +.+.+ +|+|+.|+++......+.+.|+++++|+-.+
T Consensus 52 ~~~~-----~~l~~-~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 REFE-----EDLDG-ADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS-G-----GGCTT-ESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hhHH-----HHHhh-heEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 2231 22454 9999999999999999999999999988764
No 61
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=97.71 E-value=1.3e-05 Score=65.49 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHHHHHcC
Q 013156 256 EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 256 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
+.||++|+ +++.+ .. .+ .+...||+||+++++|+++|+|+||+|+|.
T Consensus 2 ~~pC~rCl-~p~~~--~~-------~~--~C~~~GVlg~~~giigslqA~eaik~l~g~ 48 (84)
T PF05237_consen 2 KTPCYRCL-FPEPP--ES-------AP--TCAEAGVLGPVVGIIGSLQANEAIKLLLGI 48 (84)
T ss_dssp T---HHHH-HTTSS-----------TT--SSSTS-B-HHHHHHHHHHHHHHHHHHHCT-
T ss_pred CCceehhc-CCCCC--cc-------CC--CccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 57899988 44321 11 11 245669999999999999999999999986
No 62
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.70 E-value=0.0005 Score=66.36 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.+++.+|+|||.|.++..=+..|..+| .+|++|-++.-.. ... +. .++. |+.+.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~e------------------l~~----l~-~~~~--i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSKE------------------FLD----LK-KYGN--LKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCHH------------------HHH----HH-hCCC--EEEEe
Confidence 567899999999999999999999999 5699987763110 000 10 1222 44444
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..+.++ .+.+ +++||.|||+.+.-..+.+.|++.++++..+.
T Consensus 76 r~~~~~----dl~g-~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 76 GNYDKE----FIKD-KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred CCCChH----HhCC-CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 445432 3454 99999999999999999999999999887654
No 63
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.40 E-value=0.00067 Score=64.97 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=67.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.+|..=++.|..+| .+++++-.+. + +....+. +.++ ++-+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~-----------------~el~~~~----~~~~---i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E-----------------PELKALI----EEGK---IKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c-----------------HHHHHHH----HhcC---cchhh
Confidence 478899999999999999999999999 5588866654 1 1111111 1111 22222
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..+.. +.+.+ +++||-||||.+....+.+.|.++++|+-.+.
T Consensus 63 ~~~~~----~~~~~-~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 63 REFDA----EDLDD-AFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cccCh----hhhcC-ceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 22332 23333 99999999999999999999999999876543
No 64
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.36 E-value=0.00071 Score=67.67 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=55.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.|..++..|+..|+.+|+|+|.+ . .|++.+++++....+...+...
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~---------~ka~~La~~~~~~~~~~~~~~~-- 183 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------T---------SRAQALADVINNAVGREAVVGV-- 183 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------H---------HHHHHHHHHHhhccCcceEEec--
Confidence 557899999999999999999999999999997543 1 3788888777654443222221
Q ss_pred cCCccchHHHhcCCCCEEEEccC
Q 013156 162 LYDASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~D 184 (448)
+..+..+.+. ++|+||+|+.
T Consensus 184 --~~~~~~~~~~-~~divINaTp 203 (283)
T PRK14027 184 --DARGIEDVIA-AADGVVNATP 203 (283)
T ss_pred --CHhHHHHHHh-hcCEEEEcCC
Confidence 1111222334 4899999875
No 65
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.36 E-value=0.00054 Score=71.00 Aligned_cols=95 Identities=26% Similarity=0.397 Sum_probs=64.2
Q ss_pred EEEEcCChHHHHHHHHHHHhCCc-eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC-
Q 013156 87 VVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD- 164 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~- 164 (448)
|+|+|+|.+|+.++..|++.+-- ++++.|.+. .|++.+.+.+ ...++......++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999855 899977663 2333333222 2234544444433
Q ss_pred ccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+.+.+++.+ +|+||+|...+ ....+.+.|.+.|+++++.
T Consensus 58 ~~~l~~~~~~-~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRG-CDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTT-SSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhc-CCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 3446677776 99999999887 6778899999999999994
No 66
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.31 E-value=0.00014 Score=68.75 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=51.9
Q ss_pred cCHHHHHHhhCCcEEEEcCChHHHH-HHHHHHHhCCceE------EEE---eCCcccccccccccc
Q 013156 74 FGVESQQKVSGSYVVVIGLGGVGSH-AAAMLLRSGVGRL------LLV---DFDQVSVSSLNRHAV 129 (448)
Q Consensus 74 ~G~e~q~~L~~~~VlVVG~GGvGs~-va~~LarsGVg~i------~Li---D~D~V~~sNLnRq~l 129 (448)
=+.+.+++|++++|.|+|.|+.|+. ++..|+.+||+.+ ++| |++..+++|+|||++
T Consensus 95 ~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 95 DPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred CHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 3467889999999999999999999 9999999999998 999 999999999999986
No 67
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.17 E-value=0.005 Score=53.86 Aligned_cols=94 Identities=28% Similarity=0.366 Sum_probs=61.5
Q ss_pred cEEEEcC-ChHHHHHHHHHHH-hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC-CCceEEEEecc
Q 013156 86 YVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in-P~v~v~~~~~~ 162 (448)
||+|+|+ |-.|+.+++.+.. .|+.=.-.+|... + . +-..|+|. +..+. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~-----~-~~g~d~g~---------~~~~~~~~~~v------ 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---S-----A-KVGKDVGE---------LAGIGPLGVPV------ 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---S-----T-TTTSBCHH---------HCTSST-SSBE------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---c-----c-cccchhhh---------hhCcCCccccc------
Confidence 7999999 9999999999998 6666556666553 0 0 11234441 11111 11222
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.++.++++.. +|+|||.+ +++.-....++|.++++|+|.+.
T Consensus 58 --~~~l~~~~~~-~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 58 --TDDLEELLEE-ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp --BS-HHHHTTH--SEEEEES--HHHHHHHHHHHHHHT-EEEEE-
T ss_pred --chhHHHhccc-CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC
Confidence 1345677765 99999999 88888899999999999999965
No 68
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.01 E-value=0.0035 Score=62.79 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=55.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+.+.+.+..+.+.+....
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d- 186 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD- 186 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence 56789999999999999999999999999999664310 0135566666666555544443222
Q ss_pred cCCc-cchHHHhcCCCCEEEEccC
Q 013156 162 LYDA-SSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~-~~~~~ll~~~~D~Vida~D 184 (448)
++. +...+.+.. +|+||+||-
T Consensus 187 -~~~~~~~~~~~~~-~DilINaTp 208 (289)
T PRK12548 187 -LNDTEKLKAEIAS-SDILVNATL 208 (289)
T ss_pred -hhhhhHHHhhhcc-CCEEEEeCC
Confidence 221 222334443 788888764
No 69
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.00 E-value=0.0048 Score=64.62 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=61.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||+|-.|.-+|++|...|+.+|++ +||+. .|++-+++++. .++.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~---------erA~~La~~~~-----~~~~--- 227 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTL---------ERAEELAKKLG-----AEAV--- 227 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCH---------HHHHHHHHHhC-----Ceee---
Confidence 389999999999999999999999999999999 78986 37887777776 2222
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDT 188 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~ 188 (448)
.-+...+.+.. +|+||.||..+..
T Consensus 228 ---~l~el~~~l~~-~DvVissTsa~~~ 251 (414)
T COG0373 228 ---ALEELLEALAE-ADVVISSTSAPHP 251 (414)
T ss_pred ---cHHHHHHhhhh-CCEEEEecCCCcc
Confidence 22334556664 9999999987653
No 70
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.97 E-value=0.0023 Score=63.86 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=53.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.|..++..|+..|+.+|+|++ |. ..|++.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~n----------Rt---------~~ka~~La~~~~~~~~---~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVIN----------RN---------PDKLSRLVDLGVQVGV---ITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEe----------CC---------HHHHHHHHHHhhhcCc---ceecc-
Confidence 5678999999999999999999999999999964 43 2477777766543211 11111
Q ss_pred cCCccchHHHhcCCCCEEEEccCC
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn 185 (448)
..+.....+. ++|+||+||.-
T Consensus 180 --~~~~~~~~~~-~~DiVInaTp~ 200 (282)
T TIGR01809 180 --GDSGGLAIEK-AAEVLVSTVPA 200 (282)
T ss_pred --chhhhhhccc-CCCEEEECCCC
Confidence 0011223334 49999999864
No 71
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.91 E-value=0.0092 Score=63.63 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|||.|.++..=++.|..+|. ++++|-++.- +. +.++...-+|+.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~------------------~~-------~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI------------------PQ-------FTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------HH-------HHHHHhCCCEEEEe
Confidence 5789999999999999999999999995 6999755421 01 11111112344444
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC--CCccCCCceeeccc-----ccccCCchhH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA--GARADPTRIRVADL-----RESTNDPLSR 233 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~--g~~~dp~~i~i~di-----~~~~~dpl~~ 233 (448)
..+.. +.+.+ +++||.||||.+....|.+.|++.++++-.+.-- +...-|..++-+++ +.....-+++
T Consensus 63 ~~~~~----~dl~~-~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~ 137 (457)
T PRK10637 63 GPFDE----SLLDT-CWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLAR 137 (457)
T ss_pred CCCCh----HHhCC-CEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHH
Confidence 44543 34454 9999999999999999999999999986554321 11222443333332 2233445677
Q ss_pred HHHHHhhhhc
Q 013156 234 AVRHRLRKDY 243 (448)
Q Consensus 234 ~~r~~l~~~~ 243 (448)
.+|+++....
T Consensus 138 ~lr~~ie~~~ 147 (457)
T PRK10637 138 LLREKLESLL 147 (457)
T ss_pred HHHHHHHHhc
Confidence 8888887744
No 72
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0036 Score=62.63 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=55.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++++|+|+|+||.+..|+..|+..|+.+|+| .||.. .|++.+++.+.+..+.+.......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V----------~NRt~---------~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITV----------VNRTR---------ERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEE----------EeCCH---------HHHHHHHHHhhhcccccccccccc-
Confidence 4689999999999999999999999999999 56653 588888888888776322221111
Q ss_pred CCccchHHHhcCCCCEEEEccCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn 185 (448)
.+. .. ++|+||+||.-
T Consensus 185 --~~~----~~-~~dliINaTp~ 200 (283)
T COG0169 185 --LEG----LE-EADLLINATPV 200 (283)
T ss_pred --ccc----cc-ccCEEEECCCC
Confidence 011 11 38999998754
No 73
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.73 E-value=0.0035 Score=65.97 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=55.7
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.+.+++|+|+|+||.|..++++|+..|+.+|++ .||.. .|++.+++.+.. .++..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V----------~nRt~---------~ra~~La~~~~~----~~~~~-- 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIML----------ANRTI---------EKAQKITSAFRN----ASAHY-- 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE----------ECCCH---------HHHHHHHHHhcC----CeEec--
Confidence 467899999999999999999999999999999 56642 366666655431 11111
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
+ +...+.+.. +|+||.||..+.
T Consensus 233 --~--~~l~~~l~~-aDiVI~aT~a~~ 254 (414)
T PRK13940 233 --L--SELPQLIKK-ADIIIAAVNVLE 254 (414)
T ss_pred --H--HHHHHHhcc-CCEEEECcCCCC
Confidence 1 233455664 999999998754
No 74
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.0088 Score=63.13 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=62.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.-+ ..+...+++...+ ++ .+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~~--~~--~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGELG--IE--LVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhcC--CE--EEeC
Confidence 678999999999999999999999996 69998876410 1111123333222 22 2222
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
... ++... .+|+||.++..... ..+...|+++|+|++.-.
T Consensus 60 ~~~----~~~~~-~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~~~ 99 (450)
T PRK14106 60 EYP----EEFLE-GVDLVVVSPGVPLD-SPPVVQAHKKGIEVIGEV 99 (450)
T ss_pred Ccc----hhHhh-cCCEEEECCCCCCC-CHHHHHHHHCCCcEEeHH
Confidence 111 23344 49999998875433 336677777888877643
No 75
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.69 E-value=0.011 Score=62.21 Aligned_cols=37 Identities=35% Similarity=0.663 Sum_probs=33.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+++|+|+|+|.+|..++.+|...|+.+++++|.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3778999999999999999999999999999997654
No 76
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.66 E-value=0.007 Score=60.72 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=54.4
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+++++|+|+|+||.+..++..|+..|+.+|+|++ |.. -...|++.+++++....+ +.+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~n----------Rt~------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN----------RRD------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCc------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 5678999999999999999999999999999955 321 023577778777754332 2222211
Q ss_pred cCCc-cchHHHhcCCCCEEEEccC
Q 013156 162 LYDA-SSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 162 ~~~~-~~~~~ll~~~~D~Vida~D 184 (448)
+.. +...+.+. ++|+||+||-
T Consensus 184 -~~~~~~l~~~~~-~aDivINaTp 205 (288)
T PRK12749 184 -LADQQAFAEALA-SADILTNGTK 205 (288)
T ss_pred -hhhhhhhhhhcc-cCCEEEECCC
Confidence 111 11122233 4899999874
No 77
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.61 E-value=0.017 Score=58.38 Aligned_cols=84 Identities=24% Similarity=0.272 Sum_probs=57.6
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+.+.+|+|+|+|.+|..++++|...|+.+++++|.+. .|++.+++.+.. .+. .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~--~- 228 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAV--P- 228 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEE--e-
Confidence 6899999999999999999999999999999976542 344444444321 111 1
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHH
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC 196 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c 196 (448)
.++..+.+.. +|+||.|+.+...+..+....
T Consensus 229 ---~~~~~~~l~~-aDvVi~at~~~~~~~~~~~~~ 259 (311)
T cd05213 229 ---LDELLELLNE-ADVVISATGAPHYAKIVERAM 259 (311)
T ss_pred ---HHHHHHHHhc-CCEEEECCCCCchHHHHHHHH
Confidence 1223444554 999999999887744444443
No 78
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.61 E-value=0.0046 Score=59.81 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=35.4
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCc
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~ 118 (448)
.+++.+|+|+|+||.|..++..|+..|+. +|.|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999998873
No 79
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.61 E-value=0.0062 Score=60.56 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=52.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.+++++|+|+|+||+|..++..|...|+.++++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3678899999999999999999999999999996543 1355666665543321 111 0
Q ss_pred ccCCccchHHHhcCCCCEEEEccCC
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn 185 (448)
. ...+.+. ++|+||+|+..
T Consensus 177 --~---~~~~~~~-~~DivInaTp~ 195 (278)
T PRK00258 177 --L---ELQEELA-DFDLIINATSA 195 (278)
T ss_pred --c---cchhccc-cCCEEEECCcC
Confidence 0 1123334 49999998754
No 80
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.60 E-value=0.012 Score=55.71 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=32.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|+|+|.+|+.+++.|...|. ++.++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 67788765
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.022 Score=55.05 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=63.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc-C
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-Y 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~-~ 163 (448)
.+++|+|||-+|..+|+.|+..|-. +.+||.|.= .+.+.+.. .....++... .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence 4799999999999999999999955 777777731 01111111 1223333332 2
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH-cCCcEEEEcC
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCATG 208 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~-~~ip~I~~~g 208 (448)
+++.+.+.-..++|.+|-++++-.....+...+.+ +|+|-+.+-.
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 23333333223599999999998877777766655 8999888653
No 82
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.16 E-value=0.0093 Score=54.42 Aligned_cols=113 Identities=21% Similarity=0.246 Sum_probs=64.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.+||+|-.|+.+|.+|+++|.. +.+.|.+. +.+.+.. +.|-..++..++.+.+. ++-+.... +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~---~~~~~~~-----~~g~~~~~s~~e~~~~~--dvvi~~v~---~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSP---EKAEALA-----EAGAEVADSPAEAAEQA--DVVILCVP---D 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSH---HHHHHHH-----HTTEEEESSHHHHHHHB--SEEEE-SS---S
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccch---hhhhhhH-----HhhhhhhhhhhhHhhcc--cceEeecc---c
Confidence 4799999999999999999999975 88877553 1111111 11222222222333222 22232222 1
Q ss_pred ccchHH------Hhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 165 ASSEEE------ILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~------ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
.+...+ ++. .+-++||||+. +++....+.+.+..+|+.+|++.-.|+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 111222 221 13578888876 577788999999999999999887664
No 83
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.10 E-value=0.035 Score=53.78 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=71.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|++++|+|.|.|.||..+++.|...|..-+.+.|.+ ..++.++-+-..+....++.-..+...-..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~---------g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~--- 94 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD---------GTIYNPDGLDVPALLAYKKEHGSVLGFPGA--- 94 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---------CeEECCCCCCHHHHHHHHHhcCCcccCCCc---
Confidence 56799999999999999999999999998877787764 234444433322322222322221111000
Q ss_pred eccCCccchHHHhcCCCCEEEEccCCh-HHHHHHHHHHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHHHHH
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVRHR 238 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~-~~r~~l~~~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r~~ 238 (448)
..++. ++++..++|++|.|.-.- -+. +-+.+.+.++|..+. +.|+.....+.
T Consensus 95 -~~~~~---~~i~~~~~Dvlip~a~~~~i~~----~~~~~l~a~~I~egA-------------------N~~~t~~a~~~ 147 (227)
T cd01076 95 -ERITN---EELLELDCDILIPAALENQITA----DNADRIKAKIIVEAA-------------------NGPTTPEADEI 147 (227)
T ss_pred -eecCC---ccceeecccEEEecCccCccCH----HHHhhceeeEEEeCC-------------------CCCCCHHHHHH
Confidence 11222 234444699999988421 111 223344567776554 45666566667
Q ss_pred hhh
Q 013156 239 LRK 241 (448)
Q Consensus 239 l~~ 241 (448)
|++
T Consensus 148 L~~ 150 (227)
T cd01076 148 LHE 150 (227)
T ss_pred HHH
Confidence 776
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.10 E-value=0.015 Score=53.79 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.1
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~ 116 (448)
.|.+++|+|||+|. +|..++++|.+.|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 58999999999998 59989999999998 6888763
No 85
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.99 E-value=0.036 Score=58.49 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=32.9
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|+|+|++|..++.+|...|+.+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999997654
No 86
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.97 E-value=0.089 Score=51.81 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=72.1
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCc----------eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhh
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG----------RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS 149 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg----------~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~ 149 (448)
++|++.+|+++|+|+.|..+++.|...|+. +|.++|.+=+=..+- .+.-..|...+ +.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~~-~~--- 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHLA-RF--- 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHHH-HH---
Confidence 478899999999999999999999999997 999999775322111 12222222211 11
Q ss_pred hCCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.- ...++.+.+.. ++|++|.++. +.-++..|-.++.....|+|.+..
T Consensus 89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 12210 11345555551 3999998775 344567778888888899999874
No 87
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.92 E-value=0.042 Score=51.34 Aligned_cols=84 Identities=27% Similarity=0.348 Sum_probs=54.6
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.+++++|+|+|. |++|..++..|+..| .++++++.+ ..|++.+.+.+.+.. ..++...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999998 488886543 235555555554322 2333322
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChH
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
. ..+.++..+.+.+ +|+||.|+....
T Consensus 84 ~-~~~~~~~~~~~~~-~diVi~at~~g~ 109 (194)
T cd01078 84 E-TSDDAARAAAIKG-ADVVFAAGAAGV 109 (194)
T ss_pred e-CCCHHHHHHHHhc-CCEEEECCCCCc
Confidence 1 1233334455654 899998876533
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.80 E-value=0.02 Score=50.98 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=32.4
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|++|..++..|...|..+++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 567899999999999999999999987789998865
No 89
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.77 E-value=0.049 Score=49.41 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=60.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|.|+|+|..|+.+|..|+..| .+++|.+.|.=....++.+-. -....|.+++... -.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~~-i~~t- 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPEN-IKAT- 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEETT-EEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCcc-cccc-
Confidence 6899999999999999999999 778887776522222221110 0011233222210 0112
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHH--HcCCcEEEEc
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT 207 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~--~~~ip~I~~~ 207 (448)
.+.++.+.+ .|+||-|+.+...+..+.++.. +.+.++|+..
T Consensus 61 ~dl~~a~~~-ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 61 TDLEEALED-ADIIIIAVPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp SSHHHHHTT--SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred cCHHHHhCc-ccEEEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 244566665 9999999999888877666554 5677777743
No 90
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.77 E-value=0.074 Score=53.06 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=74.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHh----CC------ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhh
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS 149 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~ 149 (448)
++|++.+|+++|+|+.|..+++.|+.+ |+ ++|.++|.+=+=..+ | .|+-..|...++.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~~---- 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFARK---- 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHhh----
Confidence 478899999999999999999999988 99 799999977532211 1 1233334343332
Q ss_pred hCCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++ ....++.+.+.. ++|++|.++. ..-++..|-.++.....|+|....
T Consensus 89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 232 011345566651 3999999885 455677888888888999999875
No 91
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.69 E-value=0.08 Score=52.18 Aligned_cols=107 Identities=22% Similarity=0.279 Sum_probs=69.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHh----CC------ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI 150 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i 150 (448)
+|++.||+++|+|..|.-++..|+.+ |+ ++|.++|.+=+=..+ ..|+- +.-+...+..
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~----~~~~~~a~~~ 89 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLN----PHKKPFARKT 89 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHS----HHHHHHHBSS
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCC----hhhhhhhccC
Confidence 58999999999999999999999999 99 899999977431111 11221 2223344444
Q ss_pred CCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 151 FPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 151 nP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
+|.... .++.+.+.+ ++|++|.++. ..-++..+-.++..+..|+|....
T Consensus 90 ~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 90 NPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp STTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred cccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 543221 244555544 4799999874 334567788888889999999875
No 92
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.69 E-value=0.028 Score=56.64 Aligned_cols=33 Identities=42% Similarity=0.691 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCc-eEEEEeCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
++|.|||+|++|+.+|..|+..|+. +|.|+|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3799999999999999999999985 89998875
No 93
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.19 Score=54.48 Aligned_cols=110 Identities=21% Similarity=0.313 Sum_probs=76.4
Q ss_pred HHHHHhhCCcEEEEcCC-hHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCce
Q 013156 77 ESQQKVSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECH 155 (448)
Q Consensus 77 e~q~~L~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~ 155 (448)
.-++-+.+++|+|-|+| ++||++++.+++.+.++|.++|.|. .|-..+...+++..|..+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCcc
Confidence 44567899999999875 6899999999999999999977764 455556667777777777
Q ss_pred EEEEeccC-CccchHHHhcC-CCCEEEEccC---------ChHH--------HHHHHHHHHHcCCcEEE
Q 013156 156 IDAKVLLY-DASSEEEILSG-HPDFVLDCID---------NIDT--------KVALLAACVRRGLKVLC 205 (448)
Q Consensus 156 v~~~~~~~-~~~~~~~ll~~-~~D~Vida~D---------n~~~--------r~~l~~~c~~~~ip~I~ 205 (448)
+..+-..+ +.+.....+.+ ++|+|+-|.. |+.. -.-+.+.|.++++.-+-
T Consensus 304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V 372 (588)
T COG1086 304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFV 372 (588)
T ss_pred eEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEE
Confidence 76665544 33334444442 4888886654 3322 12466788888877443
No 94
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.63 E-value=0.048 Score=44.70 Aligned_cols=90 Identities=26% Similarity=0.328 Sum_probs=55.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC--ceEEEE-eCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV--GRLLLV-DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV--g~i~Li-D~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|.+|+.++..|+++|+ .++.++ +.+ ..|++.++++ .+ +.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~~~~~~~----~~-~~~~----- 51 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKAAELAKE----YG-VQAT----- 51 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHHHHHHHH----CT-TEEE-----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHHHHHHHh----hc-cccc-----
Confidence 68999999999999999999994 344432 222 1233333332 22 1111
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHH-HHHcCCcEEEEc
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAA-CVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~-c~~~~ip~I~~~ 207 (448)
..+..+.+.. .|+||-|+........+.+. ....+.-+|+.+
T Consensus 52 --~~~~~~~~~~-advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 52 --ADDNEEAAQE-ADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp --SEEHHHHHHH-TSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred --cCChHHhhcc-CCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 1123455553 99999999998888777766 455677777754
No 95
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.61 E-value=0.031 Score=55.69 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=62.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+++|+|+|+||.+..++..|...|+.+|+|++.+.=....|...+-. +.. ..+.....++-|.+-+...
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~---~~~--------~~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGY---EWR--------PDLGGIEADILVNVTPIGM 190 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCC---cch--------hhcccccCCEEEECCcccc
Confidence 35899999999999999999999999999987664222222221100 000 0010011122222221111
Q ss_pred Cc--c----ch-HHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 164 DA--S----SE-EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~--~----~~-~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.. + .. .+.+.. ..+|+|.+-++. .-.+.+.|++.|.+++++.
T Consensus 191 ~~~~~~~~~pi~~~~l~~-~~~v~D~vY~P~-~T~ll~~A~~~G~~~i~Gl 239 (272)
T PRK12550 191 AGGPEADKLAFPEAEIDA-ASVVFDVVALPA-ETPLIRYARARGKTVITGA 239 (272)
T ss_pred CCCCccccCCCCHHHcCC-CCEEEEeecCCc-cCHHHHHHHHCcCeEeCCH
Confidence 10 0 01 122332 457777777653 3457788888888888754
No 96
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.49 E-value=0.22 Score=45.33 Aligned_cols=98 Identities=31% Similarity=0.407 Sum_probs=63.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc-CC
Q 013156 87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-YD 164 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~-~~ 164 (448)
|+|+|+ |.+|..+++.|.+.| -+++. +.|.. .|.+. .+.+++. ... .+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~----------~~R~~---------~~~~~--------~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTA----------LVRSP---------SKAED--------SPGVEII--QGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEE----------EESSG---------GGHHH--------CTTEEEE--ESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEE----------EecCc---------hhccc--------ccccccc--eeeehh
Confidence 789998 999999999999999 55666 33332 12222 5555543 333 34
Q ss_pred ccchHHHhcCCCCEEEEccCC----hHHHHHHHHHHHHcCCcE-EEEcCCCCccCC
Q 013156 165 ASSEEEILSGHPDFVLDCIDN----IDTKVALLAACVRRGLKV-LCATGAGARADP 215 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~Dn----~~~r~~l~~~c~~~~ip~-I~~~g~g~~~dp 215 (448)
.+...+.+.+ +|.||+|... ...-..+.+.|.+.+++- |..++.+...++
T Consensus 51 ~~~~~~al~~-~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~ 105 (183)
T PF13460_consen 51 PDSVKAALKG-ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDP 105 (183)
T ss_dssp HHHHHHHHTT-SSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTTTC
T ss_pred hhhhhhhhhh-cchhhhhhhhhcccccccccccccccccccccceeeeccccCCCC
Confidence 4556667775 9999999863 333457778888888863 333444443343
No 97
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.43 E-value=0.046 Score=63.58 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=60.6
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
-+.++|+|+|+|.+|+.++.+|++.+--. .+..|.-+...+ +..-.|.-..+++.+++. .|.++....+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~--~~~~~~~~~~~~----lV~VaD~~~~~a~~la~~----~~~~~~v~lD- 635 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTIS--YYGDDSEEPTDV----HVIVASLYLKDAKETVEG----IENAEAVQLD- 635 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCcc--cccccccccccc----EEEEECCCHHHHHHHHHh----cCCCceEEee-
Confidence 35779999999999999999999864221 000000000000 011123333344433333 2333221111
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.-+.+....++.+ +|+||.|+.. .....+...|.++|+.++...
T Consensus 636 v~D~e~L~~~v~~-~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 636 VSDSESLLKYVSQ-VDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred cCCHHHHHHhhcC-CCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 1122334444454 8999988877 345677777777777777654
No 98
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.42 E-value=0.02 Score=53.34 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=57.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccc---cccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|..|+.+|..++++|. +++|+|.+.-........+ +-...+-|....+.....+..+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~------~--- 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF------T--- 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE------E---
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc------c---
Confidence 68999999999999999999995 4999998765443322221 111112233333344444443331 1
Q ss_pred CCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHH
Q 013156 163 YDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR 198 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~ 198 (448)
.+.+++. + +|+||.|+. +.+.|..+.+...+
T Consensus 71 ---~dl~~~~-~-adlViEai~E~l~~K~~~~~~l~~ 102 (180)
T PF02737_consen 71 ---TDLEEAV-D-ADLVIEAIPEDLELKQELFAELDE 102 (180)
T ss_dssp ---SSGGGGC-T-ESEEEE-S-SSHHHHHHHHHHHHC
T ss_pred ---cCHHHHh-h-hheehhhccccHHHHHHHHHHHHH
Confidence 1233444 3 999999984 77788766655444
No 99
>PRK09242 tropinone reductase; Provisional
Probab=95.41 E-value=0.34 Score=46.57 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=55.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.+++++++|+|+ ||+|..+++.|+..|. ++.+++.+. .+.+.+.+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA-------------------DALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEEE
Confidence 367889999986 7999999999999997 577766431 2344455666666666677666
Q ss_pred eccCCc-cchHHHh------cCCCCEEEEccC
Q 013156 160 VLLYDA-SSEEEIL------SGHPDFVLDCID 184 (448)
Q Consensus 160 ~~~~~~-~~~~~ll------~~~~D~Vida~D 184 (448)
...+.. +....++ .++.|+||.+..
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 555433 2222222 135888888774
No 100
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.41 E-value=0.061 Score=53.86 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+..+|+|+|+|++|..++..+...|+..+.++|.+. .| .+.+.. ..-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~------~r-------------l~~a~~-~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP------RR-------------RDGATG-YEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH------HH-------------HHhhhh-ccccChh---------
Confidence 567899999999999999988889998888776432 11 111110 0011211
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+ ....+|+||||+.+..+.....+..+..|.-++.+
T Consensus 195 --~~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 195 --KD-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred --hc-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 00 11249999999999877666677777777755543
No 101
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.38 E-value=0.058 Score=51.91 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=64.2
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|++++|+|.|+|.||+++|+.|...|...+.+.|.+- .+|.+ |-.-.+. .++..+...-..+. ..
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g---------~i~~~---Gld~~~l-~~~~~~~~~~~~~~-~~ 85 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG---------YIYDP---GITTEEL-INYAVALGGSARVK-VQ 85 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------cEECC---CCCHHHH-HHHHHhhCCccccC-cc
Confidence 57899999999999999999999999999999998764 34433 4432222 22222221100110 00
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHH-HHHHHcCCcEEEEcCCC
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL-AACVRRGLKVLCATGAG 210 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~-~~c~~~~ip~I~~~g~g 210 (448)
+.++. ++++.-++|++|-|.-.- .++ +-+.+.+.++|..+..+
T Consensus 86 ~~~~~---~~l~~~~~DVlipaA~~~----~i~~~~a~~l~a~~V~e~AN~ 129 (217)
T cd05211 86 DYFPG---EAILGLDVDIFAPCALGN----VIDLENAKKLKAKVVAEGANN 129 (217)
T ss_pred cccCc---ccceeccccEEeeccccC----ccChhhHhhcCccEEEeCCCC
Confidence 11121 234444589888877432 112 34455667777765543
No 102
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.31 E-value=0.051 Score=54.48 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~ 183 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS 183 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5778999999999999999999999997 89987764
No 103
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.31 E-value=0.03 Score=45.57 Aligned_cols=38 Identities=37% Similarity=0.585 Sum_probs=34.4
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..+..++++|+|+|++|..++.+|...|..++.++|.|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34788999999999999999999999988899998883
No 104
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.23 E-value=0.17 Score=49.74 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=58.0
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHh-CCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|+|+|| |.+|..++..+... ++.-..++|.+.- ..... ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~~------------------------~~~~i~----- 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVGQ------------------------GALGVA----- 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccc------------------------CCCCcc-----
Confidence 37999999 99999999988764 5555555665521 11000 001111
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
...+.++++. .+|+|||++ +++.-..+...|.++|+|++.+
T Consensus 50 -~~~dl~~ll~-~~DvVid~t-~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 50 -ITDDLEAVLA-DADVLIDFT-TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -ccCCHHHhcc-CCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 1134556665 499999999 5555588889999999999975
No 105
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.18 E-value=0.058 Score=57.01 Aligned_cols=37 Identities=35% Similarity=0.576 Sum_probs=33.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+.+++|+|+|+|.+|..++..|...|+ +++++|.|.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3689999999999999999999999998 699988764
No 106
>PLN00203 glutamyl-tRNA reductase
Probab=95.18 E-value=0.066 Score=58.03 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=53.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
|.+++|+|||+|..|..++++|...|+.++++++.+ . .|++.+++.+ +.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~---------era~~La~~~----~g~~i~~~-- 318 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------E---------ERVAALREEF----PDVEIIYK-- 318 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------H---------HHHHHHHHHh----CCCceEee--
Confidence 668999999999999999999999999999995433 1 2444444443 22222221
Q ss_pred cCCccchHHHhcCCCCEEEEccCChH
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
..++..+.+.+ +|+||.||....
T Consensus 319 --~~~dl~~al~~-aDVVIsAT~s~~ 341 (519)
T PLN00203 319 --PLDEMLACAAE-ADVVFTSTSSET 341 (519)
T ss_pred --cHhhHHHHHhc-CCEEEEccCCCC
Confidence 11233455554 999999987654
No 107
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.17 E-value=0.16 Score=51.93 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=57.0
Q ss_pred cEEEEcCChHHHHHHHHHHHh------CC--ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 86 YVVVIGLGGVGSHAAAMLLRS------GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~Lars------GV--g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
+|.|+|+|.||+.+++.|..- |. .-+.+.|.. ..++....+...+....++. ..+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~---------g~l~~~~Gldl~~l~~~~~~-g~l~------ 65 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK---------LSYYNERGLDIGKIISYKEK-GRLE------ 65 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC---------CcccCCcCCChHHHHHHHhc-Cccc------
Confidence 799999999999999999862 33 333343432 22333333332222111111 1111
Q ss_pred EEeccCCccchHHHhcCCCCEEEEccCChHH---HHHHHHHHHHcCCcEEEEc
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDT---KVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~---r~~l~~~c~~~~ip~I~~~ 207 (448)
.+. .+..+.++++..++|+||+|+.+..+ -..+...+.++|+.+|.+.
T Consensus 66 ~~~--~~~~~~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 66 EID--YEKIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred cCC--CCcCCHHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 110 11113345554469999999964221 3445577788999999864
No 108
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.16 E-value=0.083 Score=53.03 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=69.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh-CCCceEEEEecc-C
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~ 163 (448)
+|.|||+|-.|+.++.+|+..|. ++.++|.+.-....+. +.|..-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 5888887642221111 11222222222333322 345544444332 1
Q ss_pred CccchHHHhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
..+....+.. .+-++|||++. ++..-..+.+.+.+.++.++++.-.|+
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 1111222221 12478999865 455666788999999999999766664
No 109
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.12 E-value=0.13 Score=50.76 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=31.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..+++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357789999999999999999999996 89998765
No 110
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.12 E-value=0.13 Score=51.76 Aligned_cols=41 Identities=37% Similarity=0.527 Sum_probs=31.8
Q ss_pred EEEE-cCChHHHHHHHHHHHhCCceEEEEeCCcccccccccc
Q 013156 87 VVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 87 VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq 127 (448)
|+|- |+|++||++++.|++.+..+|.++|.|--.+.++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHH
Confidence 5677 4578999999999999999999999886665555554
No 111
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.09 E-value=0.051 Score=54.34 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=56.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccc---cccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR---HAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnR---q~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|..|+.+|.+|+++|. .++++|.+.=....... +.+-....-|.-..+.....+.++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~--------- 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF--------- 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---------
Confidence 489999999999999999999997 59999976433322100 00100112233222222223322221
Q ss_pred cCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHH
Q 013156 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVR 198 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~ 198 (448)
+ .+. +.+.+ +|+||.|+ ++.+.|..+...+.+
T Consensus 76 --~-~~~-~~~~~-~d~ViEav~E~~~~K~~l~~~l~~ 108 (286)
T PRK07819 76 --T-TDL-GDFAD-RQLVIEAVVEDEAVKTEIFAELDK 108 (286)
T ss_pred --e-CCH-HHhCC-CCEEEEecccCHHHHHHHHHHHHH
Confidence 1 122 22454 99999998 467777766544433
No 112
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.05 E-value=0.17 Score=52.02 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=58.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHh--------CC--ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRS--------GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars--------GV--g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v 154 (448)
-+|.|+|+|.+|+.+++.|... |+ .-..+.|.+. .++....+...++...++. +.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~---------~~~~~~Gi~~~~~~~~~~~----~~-- 67 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSG---------SAIDPDGLDLELALKVKEE----TG-- 67 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCC---------cccCcCCCCHHHHHHHHhc----cC--
Confidence 4799999999999999999765 43 2333445321 1222222212222211111 11
Q ss_pred eEEEEeccCCccchHHHhc-CCCCEEEEccCCh----HHHHHHHHHHHHcCCcEEEE
Q 013156 155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNI----DTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~-~~~D~Vida~Dn~----~~r~~l~~~c~~~~ip~I~~ 206 (448)
.+..+.......+..+++. .++|+||+|+.+. +........|.++|+++|.+
T Consensus 68 ~~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta 124 (341)
T PRK06270 68 KLADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS 124 (341)
T ss_pred CcccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence 0111111111123445553 3589999999763 33456667888899999985
No 113
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.99 E-value=0.076 Score=53.32 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=66.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhh-hCCCceEEEEeccCC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS-IFPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~-inP~v~v~~~~~~~~ 164 (448)
+|.|||+|-.|+.++.+|++.|. ++.++|.+.-....+... |...+....+.... -.+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 577777664322222211 11111111111111 124444444333222
Q ss_pred ccchHHHhc--CCCCEEEEccCCh-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 165 ASSEEEILS--GHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~ll~--~~~D~Vida~Dn~-~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
.+-.+++.. .+-++||||+... .....+.+.+.+.+++++++...|+
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg 122 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGG 122 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCC
Confidence 222223321 1247899987653 5556667778888999999776664
No 114
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.95 E-value=0.19 Score=51.56 Aligned_cols=109 Identities=20% Similarity=0.232 Sum_probs=60.2
Q ss_pred CcEEEEcCChHHHHHHHHHHH--------hCCc--eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLR--------SGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC 154 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lar--------sGVg--~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v 154 (448)
-+|.|+|+|.||+.+++.|.. .|+. =..+.|.+. .++.+..+...+. .+...+-..-.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~l---~~~~~~~~~~~ 70 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLREA---KEVKENFGKLS 70 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHHH---HHhhhccCchh
Confidence 579999999999999999876 5633 233335321 1222222222222 22222211111
Q ss_pred eEEEEeccCCccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 155 ~v~~~~~~~~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+..... ....+.++++. .++|+||||+.. +.-..+...|.+.++++|.+.
T Consensus 71 ~~~~~~~-~~~~~~~ell~~~~~DVvVd~t~~-~~a~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 71 NWGNDYE-VYNFSPEEIVEEIDADIVVDVTND-KNAHEWHLEALKEGKSVVTSN 122 (336)
T ss_pred hcccccc-ccCCCHHHHHhcCCCCEEEECCCc-HHHHHHHHHHHhhCCcEEECC
Confidence 1100000 00113456663 459999999964 455666777888999999754
No 115
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.92 E-value=0.15 Score=51.37 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|.|+|+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~-------------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG-------------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC--------------------------------------------
Confidence 4579999999999999999999995 6888886630
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHH---HcCCcEEEEc
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~---~~~ip~I~~~ 207 (448)
.+..+.+.+ .|+||-|+.+...+..+..... ..+..+|+..
T Consensus 39 --~~~~~~~~~-advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 39 --LSLAAVLAD-ADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred --CCHHHHHhc-CCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 122344554 8999999988666655555432 2345566643
No 116
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.12 Score=51.46 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=33.5
Q ss_pred cCHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 74 FGVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 74 ~G~e~q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+......++++.|+|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~ 49 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN 49 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3444455678889999986 8999999999999997 57776543
No 117
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.88 E-value=0.31 Score=51.26 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=63.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+...+|+|+|+|.+|..+++.|...|. .+++||.|.= +++.+++ ..+.+.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~~~~~----~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAEELAE----ELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHHHHHH----HCCCCeE--EEC
Confidence 567999999999999999999999887 4899887631 1111111 1122222 222
Q ss_pred cC-CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 162 LY-DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 162 ~~-~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.. +.+...+.-..++|.||.++++......+...|++.+.+.+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 22 2222222222359999999988777777777888887765544
No 118
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.089 Score=56.13 Aligned_cols=35 Identities=46% Similarity=0.507 Sum_probs=31.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|++|-++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999999999999999999997 49998854
No 119
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.069 Score=53.52 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=31.4
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHhCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 ~L~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD 115 (448)
.+++++|+|+|+|+ +|.+++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 47889999999999 99999999999998 899975
No 120
>PRK04148 hypothetical protein; Provisional
Probab=94.74 E-value=0.32 Score=43.38 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=68.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++.+|++|||| -|..+|..|+..|. .++-+|-+.- .++.+++. .+++....
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~a~~~--------~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEKAKKL--------GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHHHHHh--------CCeEEECc
Confidence 34789999999 99999999999995 6777776532 33333332 12333333
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
+...+ .++-.+ +|+|-.+--..+....|.+.+++.+.+++--.-.
T Consensus 67 lf~p~-~~~y~~-a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 LFNPN-LEIYKN-AKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CCCCC-HHHHhc-CCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 32222 234444 9999999999999999999999999999886543
No 121
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.73 E-value=0.069 Score=47.45 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=52.8
Q ss_pred EEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccc-cCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVA-TRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~-~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
|+|+|+|++|+..|..|.++|.. +++++... ..+.++++-+. +..+ |. ..+..... ...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~~~~~~-~~----------------~~~~~~~~-~~~ 60 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLTITGPD-GD----------------ETVQPPIV-ISA 60 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEEEEETT-EE----------------EEEEEEEE-ESS
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEEEEecc-cc----------------eecccccc-cCc
Confidence 78999999999999999998865 88876655 33334433221 1101 11 11111111 111
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHH
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR 198 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~ 198 (448)
. ... ...+|+||.|+-+.+....+..+...
T Consensus 61 ~--~~~-~~~~D~viv~vKa~~~~~~l~~l~~~ 90 (151)
T PF02558_consen 61 P--SAD-AGPYDLVIVAVKAYQLEQALQSLKPY 90 (151)
T ss_dssp H--GHH-HSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred c--hhc-cCCCcEEEEEecccchHHHHHHHhhc
Confidence 1 112 23599999999999988877775543
No 122
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.71 E-value=0.17 Score=51.56 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=63.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+-..++|+|+|+|+.|...+..|. ..|+.++.++|.+ ..|++.+++++....+ +++..+
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~ 183 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVV 183 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEe
Confidence 345688999999999998888775 4589999996544 2466666777664332 333332
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
++.++.+.+ .|+||.||.+... .+. .+.+.|.-++..
T Consensus 184 ------~~~~~~~~~-aDiVi~aT~s~~p--~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 184 ------NSADEAIEE-ADIIVTVTNAKTP--VFS-EKLKKGVHINAV 220 (325)
T ss_pred ------CCHHHHHhc-CCEEEEccCCCCc--chH-HhcCCCcEEEec
Confidence 234455654 9999999987743 333 455666655443
No 123
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.23 Score=52.64 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=28.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|+|||+|+.|..+|..|.+.|. ++++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999997 688877553
No 124
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.63 E-value=0.42 Score=48.40 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=59.2
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
++|+|.|+ |-+|+++++.|...|=-+++.+|.+.- ++. .+.+.-.++.+...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~~~-----------------------~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---RLG-----------------------DLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---HHH-----------------------HhccCCCeEEEeCCC
Confidence 36999997 999999999999864236777664321 000 111111233333333
Q ss_pred C--ccchHHHhcCCCCEEEEccC-----------------ChHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013156 164 D--ASSEEEILSGHPDFVLDCID-----------------NIDTKVALLAACVRRGLKVLCATGAGAR 212 (448)
Q Consensus 164 ~--~~~~~~ll~~~~D~Vida~D-----------------n~~~r~~l~~~c~~~~ip~I~~~g~g~~ 212 (448)
. .+...+++.+ +|+||.|.. |...-..+.+.|++.+..+|..++.+..
T Consensus 56 ~~~~~~~~~~~~~-~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vy 122 (347)
T PRK11908 56 TINKEWIEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVY 122 (347)
T ss_pred CCCHHHHHHHHcC-CCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceee
Confidence 2 2233344554 888887532 1122245678888888899987765443
No 125
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.60 E-value=0.24 Score=52.31 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=32.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+.+|+|+|+|.+|..++..+...|+ ++.++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 578899999999999999999999999 688888764
No 126
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.58 E-value=0.38 Score=41.51 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=55.6
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCC-ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIG-LGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||.||| .|-+|++++..|...-- .-+.++... ...|++=.+... ......++.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~---------------~~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS---------------RSAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST---------------TTTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec---------------cccCCeeehhcc----ccccccceeEee--c
Confidence 699999 89999999999998432 222222222 124443222111 111112222211 1
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
.. +.+. +.|+||.|+++-.++....++ .+.|+++|+.++.
T Consensus 60 ---~~-~~~~-~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 60 ---DP-EELS-DVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGD 99 (121)
T ss_dssp ---SG-HHHT-TESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSST
T ss_pred ---ch-hHhh-cCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHH
Confidence 12 2234 499999999997776665555 8899999997653
No 127
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.55 E-value=0.069 Score=54.75 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=31.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEE
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~L 113 (448)
.|.+++|+|||+|-.|..++++|...|+.+|++
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v 203 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITF 203 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEE
Confidence 488999999999999999999999999999999
No 128
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.55 E-value=0.24 Score=50.15 Aligned_cols=103 Identities=31% Similarity=0.433 Sum_probs=70.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHh--hhhCCCceEEEEe
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHF--SSIFPECHIDAKV 160 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l--~~inP~v~v~~~~ 160 (448)
..+.|.|.|+|+||..+++---.+|.++|.=||-. ..|-+.+++.= .=+||. +..-
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN-------------------~~Kf~~ak~fGaTe~iNp~-d~~~-- 249 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN-------------------PDKFEKAKEFGATEFINPK-DLKK-- 249 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC-------------------HHHHHHHHhcCcceecChh-hccc--
Confidence 46889999999999999999999999999887732 22333222210 113443 1110
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHc-CCcEEEEcCC
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGA 209 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~-~ip~I~~~g~ 209 (448)
.+ .+-+.++..+.+|+-++|+.|.++...-.+.|++- |+.++-+...
T Consensus 250 -~i-~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 250 -PI-QEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred -cH-HHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 00 11233444556999999999999999999999986 8887775544
No 129
>PRK13529 malate dehydrogenase; Provisional
Probab=94.54 E-value=0.21 Score=54.25 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=86.3
Q ss_pred HHHHhhhhHhccCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHH----hCC------ceEEEE
Q 013156 63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLV 114 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~e~q------------------~~L~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~Li 114 (448)
+.++|...+..|..+-| ++|++.+|+++|+|+.|.-+|+.|+. .|+ .+|.++
T Consensus 256 iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~v 335 (563)
T PRK13529 256 ILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMV 335 (563)
T ss_pred HHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence 45677767777765533 47889999999999999999999997 599 599999
Q ss_pred eCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHH
Q 013156 115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA 191 (448)
Q Consensus 115 D~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~ 191 (448)
|.+=+=.++ ..|+...|...++. .++..... ..-...++.+.+.. ++|++|.++. +.-++..
T Consensus 336 D~~GLl~~~--------r~~l~~~k~~fa~~----~~~~~~~~---~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~ev 400 (563)
T PRK13529 336 DRQGLLTDD--------MPDLLDFQKPYARK----REELADWD---TEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEI 400 (563)
T ss_pred cCCCeEeCC--------CCcchHHHHHHhhh----cccccccc---cccCCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 987532211 12344445544443 12210010 00111245555554 5799999886 4556778
Q ss_pred HHHHHHHcCCcEEEEcC
Q 013156 192 LLAACVRRGLKVLCATG 208 (448)
Q Consensus 192 l~~~c~~~~ip~I~~~g 208 (448)
|-.++.....|+|.+.+
T Consensus 401 v~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 401 VKEMAAHCERPIIFPLS 417 (563)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 88888888899999875
No 130
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.53 E-value=0.15 Score=51.20 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=67.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh-CCCceEEEEecc-C
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~ 163 (448)
+|.|||+|-+|+.++.+|++.|. +++++|.+.-...-+ .+.|...+....+.+++. ++++-+.+.+.. .
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVA--------GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHH--------HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 578888653111111 112322222222222221 133434333322 1
Q ss_pred CccchHHHhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
..+-...+.. .+-.+|||++. ++..-..+.+.+.++++.++++.-.|+
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 1111223322 12368999854 466667778888889999999776665
No 131
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.52 E-value=0.1 Score=54.22 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=32.2
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 678899999999999999999999998 69998875
No 132
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.44 E-value=0.19 Score=51.29 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=59.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
++|.|||+|-.|+.+|..++.+|.. ++++|.+.=....+ ..+.....+.+.+..+.. ......+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~~--~~~~~~i~ 72 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL------------RANVANAWPALERQGLAP--GASPARLR 72 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCCh--hhHHhhce
Confidence 5799999999999999999999965 88988765222211 111111112221111100 00000111
Q ss_pred -ccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHHcCCc--EEEEcC
Q 013156 165 -ASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLK--VLCATG 208 (448)
Q Consensus 165 -~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~~~ip--~I~~~g 208 (448)
..+.++.+.+ +|+|+.|+- +.+.|..+.+-..+.-.| +|.+..
T Consensus 73 ~~~~l~~av~~-aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 73 FVATIEACVAD-ADFIQESAPEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred ecCCHHHHhcC-CCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 1134455665 999999985 677787666444333221 555443
No 133
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.42 E-value=0.25 Score=53.95 Aligned_cols=106 Identities=19% Similarity=0.237 Sum_probs=74.4
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHH-----hCC------ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhh
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLR-----SGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS 148 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~Lar-----sGV------g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~ 148 (448)
++|++.+|+++|+|..|.-+|+.|+. .|+ .+|.++|.+=+-..+ | .+++-..|...++.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 47899999999999999999999998 477 699999987432211 1 01144445554443
Q ss_pred hhCCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 149 SIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 149 ~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.+. ..++.+.+.+ ++|++|.++. +.-+...|-.+|..+..|+|.+.+
T Consensus 387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS 436 (581)
T PLN03129 387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS 436 (581)
T ss_pred --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 111 1345555553 5899999885 556677888888888999999875
No 134
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.36 E-value=0.47 Score=46.87 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=33.3
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..|++++|+|.|.|.||+++|+.|...|..-+.+.|.+
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46789999999999999999999999998777687744
No 135
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.35 E-value=0.24 Score=50.54 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 78 SQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 78 ~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
....|++++|.|||+|.+|..+|.+|..+|+. +.+.|... +.. +.... ...++
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~~--------------------~s~---~~A~~--~G~~v- 62 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRPG--------------------KSF---EVAKA--DGFEV- 62 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECcc--------------------hhh---HHHHH--cCCEE-
Confidence 46789999999999999999999999999984 66654210 000 00000 11111
Q ss_pred EEeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHH---HcCCcEEEEcCCC
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCATGAG 210 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~---~~~ip~I~~~g~g 210 (448)
.+..+++.. .|+|+.++.+..++..+++-.. +.+.-++.+.|+.
T Consensus 63 --------~sl~Eaak~-ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 63 --------MSVSEAVRT-AQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFN 109 (335)
T ss_pred --------CCHHHHHhc-CCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 135566765 9999999988777666553222 2455577777764
No 136
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.34 E-value=0.35 Score=49.45 Aligned_cols=102 Identities=29% Similarity=0.493 Sum_probs=69.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHH-HHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL-CLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~-~~~~~l~~inP~v~v~~~~~ 161 (448)
....|.|+||||+|-.+..-+..+|.++|.-||-..-.+ .+.+++-++. .=-+|-. =+.+.+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~fGAT~--~vn~~~~~~vv~~i-------------- 247 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKKFGATH--FVNPKEVDDVVEAI-------------- 247 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHhcCCce--eecchhhhhHHHHH--------------
Confidence 478899999999999999999999999999998654221 2333332221 0000000 111222
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++-.+..|++|||+.|.++...-.+.|++-|.-++-+..
T Consensus 248 -------~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 248 -------VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred -------HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 2333324999999999999988889999998887776543
No 137
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.31 E-value=0.18 Score=50.75 Aligned_cols=72 Identities=25% Similarity=0.280 Sum_probs=48.8
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCC---ceEEEEecc
Q 013156 87 VVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE---CHIDAKVLL 162 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~---v~v~~~~~~ 162 (448)
|.|||+|+||+.+|..|+..|+ .+|.|+|.+. .|++..+..|.+..+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~-------------------~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE-------------------EKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 5699988642 3445555556655543 22221
Q ss_pred CCccchHHHhcCCCCEEEEccCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn 185 (448)
. .+ .+-+.+ +|+||.|...
T Consensus 58 -~-~~-~~~l~~-aDiVIitag~ 76 (300)
T cd00300 58 -G-GD-YADAAD-ADIVVITAGA 76 (300)
T ss_pred -C-CC-HHHhCC-CCEEEEcCCC
Confidence 1 11 234454 9999988874
No 138
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.31 E-value=0.52 Score=39.78 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=57.5
Q ss_pred EEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC-c
Q 013156 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD-A 165 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~-~ 165 (448)
|+|+|+|.+|-.+++.|...+ -++.++|.|.=. + +.+.+.. +..+....+ .
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-------------------~----~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-------------------V----EELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-------------------H----HHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-------------------H----HHHHhcc----cccccccchhh
Confidence 789999999999999999944 679999988421 1 1111111 122323322 2
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHH-cC-CcEEE
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RG-LKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~-~~-ip~I~ 205 (448)
+...+.-..+++.||.++++......+...+++ .+ ++++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 222222223599999999998888888888887 33 34443
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.31 E-value=0.21 Score=50.57 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=55.6
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHH-hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 79 QQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 79 q~~L~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
..+...++|+|+|+|+.|...+..+.. .++.+|++++.+ ..|++.+++.+.+... ++.
T Consensus 120 La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~ 178 (314)
T PRK06141 120 LARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAE 178 (314)
T ss_pred hCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceE
Confidence 334457899999999999999987765 678899985432 3577777777765421 232
Q ss_pred EEeccCCccchHHHhcCCCCEEEEccCCh
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~Dn~ 186 (448)
.. ++..+.+.+ +|+|+.|+.+.
T Consensus 179 ~~------~~~~~av~~-aDIVi~aT~s~ 200 (314)
T PRK06141 179 VV------TDLEAAVRQ-ADIISCATLST 200 (314)
T ss_pred Ee------CCHHHHHhc-CCEEEEeeCCC
Confidence 21 234455554 99999999875
No 140
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.31 E-value=0.45 Score=51.78 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=83.8
Q ss_pred HHHHhhhhHhccCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHH----HhCC------ceEEEE
Q 013156 63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLL----RSGV------GRLLLV 114 (448)
Q Consensus 63 ~~e~~~Rq~~~~G~e~q------------------~~L~~~~VlVVG~GGvGs~va~~La----rsGV------g~i~Li 114 (448)
+.++|...+..|..+-| ++|++.+|++.|+|+.|.-+|..|+ +.|+ .+|.++
T Consensus 258 iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~v 337 (559)
T PTZ00317 258 LLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLV 337 (559)
T ss_pred HHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence 44666666776765543 4789999999999999999999988 4799 899999
Q ss_pred eCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcC-CCCEEEEccC--ChHHHHH
Q 013156 115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA 191 (448)
Q Consensus 115 D~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~Vida~D--n~~~r~~ 191 (448)
|.+=+-..+ | .+++-..|...++. -++. ......++.+.+.+ ++|++|.++. ..-++..
T Consensus 338 D~~GLl~~~--r-----~~~l~~~k~~fa~~----~~~~-------~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~ev 399 (559)
T PTZ00317 338 DSKGLVTTT--R-----GDKLAKHKVPFART----DISA-------EDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEV 399 (559)
T ss_pred cCCCeEeCC--C-----CccccHHHHHHhcc----cccc-------ccccCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 977432211 1 01133344443332 1100 00011245555543 5799999885 4556778
Q ss_pred HHHHHHHcCCcEEEEcC
Q 013156 192 LLAACVRRGLKVLCATG 208 (448)
Q Consensus 192 l~~~c~~~~ip~I~~~g 208 (448)
|-.++.....|+|.+.+
T Consensus 400 v~~Ma~~~~rPIIFaLS 416 (559)
T PTZ00317 400 VKTMASNVERPIIFPLS 416 (559)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 88888888899999875
No 141
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.28 E-value=0.19 Score=49.90 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=55.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|+|+|+|.+|+.++..|+++|. +++++|.+.=....++++-+ .. +-| +... .....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~-~~-~~~------------------~~~~-~~~~~- 58 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL-RL-EDG------------------EITV-PVLAA- 58 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC-cc-cCC------------------ceee-cccCC-
Confidence 69999999999999999999994 69998874311112222110 00 000 0100 00011
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcC--CcEEE
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~--ip~I~ 205 (448)
.+..+. . ++|+||.|+.+......+..+....+ ..+|.
T Consensus 59 ~~~~~~-~-~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 59 DDPAEL-G-PQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred CChhHc-C-CCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 112222 3 59999999998887776666654433 34544
No 142
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.11 E-value=0.3 Score=48.93 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=56.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|.|||+|.+|+.++..|++.|. +++++|.+.-....++.+... ....+.. ...+. +.. .
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~----------~~~~~--~~~-----~- 62 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADREN-PRYLPGI----------KLPDN--LRA-----T- 62 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcc-cccCCCC----------cCCCC--eEE-----e-
Confidence 69999999999999999999996 488888754322222221100 0000000 01111 111 1
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHH--HcCCcEEEEc
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT 207 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~--~~~ip~I~~~ 207 (448)
.+..+.+.+ +|+||-|+-+...+..+..+.. ..+..+|+..
T Consensus 63 ~~~~~~~~~-~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 63 TDLAEALAD-ADLILVAVPSQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred CCHHHHHhC-CCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 123344554 9999999998766655554433 2344566554
No 143
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.10 E-value=0.22 Score=53.39 Aligned_cols=122 Identities=13% Similarity=0.113 Sum_probs=70.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh-CCCceEEEEec-cC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVL-LY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i-nP~v~v~~~~~-~~ 163 (448)
.|.|||+|..|+.+|.+|++.|. ++.+.|.+.-....+..... ..-+..-+...++....+ .|.+-+..... ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~---~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA---KGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc---CCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999997 58888876543333322100 000001111223333332 35544443322 11
Q ss_pred CccchHHHhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 164 ~~~~~~~ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
..+-+..+.. .+=|+|||++. ++..-....+.+.+.++.++.+.-.|+
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 1122223321 12589999986 445545556778899999999887776
No 144
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.09 E-value=0.099 Score=51.85 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|||+|-+|+.++..|+++|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 789988663
No 145
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.38 Score=46.43 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=43.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
++++.++|.|+ ||+|.++++.|++.|.. +.+++.+. .|.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 66789999988 68999999999999974 77766542 23444455566666655665554
Q ss_pred ccC
Q 013156 161 LLY 163 (448)
Q Consensus 161 ~~~ 163 (448)
..+
T Consensus 66 ~D~ 68 (265)
T PRK07062 66 CDV 68 (265)
T ss_pred ecC
Confidence 433
No 146
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.08 E-value=0.48 Score=49.85 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC-
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD- 164 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~- 164 (448)
+|+|+|+|.+|..+++.|...|. .+.++|.|.- +++.+++. .. +..+....+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~~~~~~-----~~--~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLRRLQDR-----LD--VRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHHHHHhh-----cC--EEEEEeCCCC
Confidence 79999999999999999999996 5788877531 11111110 11 222222222
Q ss_pred ccchHHH-hcCCCCEEEEccCChHHHHHHHHHHHHc-CCcEEE
Q 013156 165 ASSEEEI-LSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLC 205 (448)
Q Consensus 165 ~~~~~~l-l~~~~D~Vida~Dn~~~r~~l~~~c~~~-~ip~I~ 205 (448)
.....+. +. ++|.||.|+++...-..+...|++. +.+.+.
T Consensus 55 ~~~l~~~~~~-~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 55 PDVLREAGAE-DADLLIAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred HHHHHHcCCC-cCCEEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 2222333 33 4999999998888777777788775 544443
No 147
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.08 E-value=0.072 Score=54.15 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=33.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++.+|.|||+|.+|+.++..|+..|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999975
No 148
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.07 E-value=0.21 Score=51.38 Aligned_cols=104 Identities=20% Similarity=0.158 Sum_probs=66.1
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
....+|+|+|+|.+|--++..+...|..++.++|.+.- |.+.+++..-. ..+.....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~-------------------Rl~~A~~~~g~----~~~~~~~~ 223 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE-------------------RLELAKEAGGA----DVVVNPSE 223 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHHHHHhCCC----eEeecCcc
Confidence 33448999999999999999999999999999877632 22223222111 00100000
Q ss_pred cCCccchHHHhcC-CCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 162 ~~~~~~~~~ll~~-~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
........++..+ .+|+||+|+.+..+.....++++..|.-++-+..
T Consensus 224 ~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 0000011122222 4999999999998888999999988886666543
No 149
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.07 E-value=0.2 Score=49.82 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 699998663
No 150
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.06 E-value=0.19 Score=53.86 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCCh--HHHHHHHHhhhh-CCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP--KALCLKKHFSSI-FPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~--Kv~~~~~~l~~i-nP~v~v~~~~~ 161 (448)
++|.|||+|-.|+.+|.+|++.|. +++++|.+.=....+..... .-|.. -+..+++.+..+ .|.+-+.....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999997 59998876433222221100 00110 122233444433 35443433221
Q ss_pred -cCCccchHHH---hcCCCCEEEEccCC-hHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 162 -LYDASSEEEI---LSGHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 162 -~~~~~~~~~l---l~~~~D~Vida~Dn-~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
....+-++.+ +. +=|+|||++.. +..-....+.+.++|+.+++++-.|+
T Consensus 77 ~~~v~~vi~~l~~~L~-~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLE-KGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCC-CCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1111122222 33 35899999875 45555667888899999999887776
No 151
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.9 Score=43.24 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+++|+|.| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+.+.+|..+++.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788886 68999999999999995 677766542 1233344455555666666665555
Q ss_pred CCcc-chHHHhc------CCCCEEEEcc
Q 013156 163 YDAS-SEEEILS------GHPDFVLDCI 183 (448)
Q Consensus 163 ~~~~-~~~~ll~------~~~D~Vida~ 183 (448)
++.. ....++. +..|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4432 2222211 2478777765
No 152
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.03 E-value=0.4 Score=51.00 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=33.4
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|.|.|-||+++|+.|...|..-+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4889999999999999999999999998877777844
No 153
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.01 E-value=0.44 Score=45.91 Aligned_cols=93 Identities=11% Similarity=0.128 Sum_probs=54.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
++.+|.|||+|.+|+.++..|++.|. .++.+++. + ...|.+.+++. .+ ++ ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------~--------~~~~~~~~~~~----~~-~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------S--------NVEKLDQLQAR----YN-VS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------C--------CHHHHHHHHHH----cC-cE--Ee
Confidence 45789999999999999999999873 22333221 1 01233322222 11 22 11
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH-cCCcEEEEc
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT 207 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~-~~ip~I~~~ 207 (448)
.+..+.+.+ .|+||.|+-+...+..+.++... .+..+|+.+
T Consensus 58 ------~~~~~~~~~-~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~ 99 (245)
T PRK07634 58 ------TDWKQHVTS-VDTIVLAMPPSAHEELLAELSPLLSNQLVVTVA 99 (245)
T ss_pred ------CChHHHHhc-CCEEEEecCHHHHHHHHHHHHhhccCCEEEEEC
Confidence 123345554 99999999987766666555422 345566654
No 154
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.01 E-value=0.12 Score=52.05 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=32.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3578999999999999999999999997 89998776
No 155
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.00 E-value=0.28 Score=48.69 Aligned_cols=115 Identities=21% Similarity=0.185 Sum_probs=66.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEE---EEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLL---LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~---LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
.||.|||||.+|..++..|..-+...+. +.|.+.-. .+. + .+..++-.--+.+....|++-|++-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~----~~~-~-----~~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL----PPA-L-----AGRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH----HHH-h-----hccCcccCCHHHHhhcCCCEEEECCCH
Confidence 5899999999999999998654432232 22332100 000 0 011121111233445567776665443
Q ss_pred cCCccchHHHhcCCCCEEEEccC---ChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 162 LYDASSEEEILSGHPDFVLDCID---NIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~D---n~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
..-.+....++....|+|+-.+. +.+....|.+.|++.+..++-.+|+
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 33344455666645888886654 5567778888888887666654444
No 156
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.00 E-value=0.28 Score=51.48 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=34.0
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccc
Q 013156 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 79 q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
+...++.+|+|+|.|.+|..+++.|...|. .+.+||.|.++
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~ 275 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE 275 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh
Confidence 334457899999999999999999998886 68899988553
No 157
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.00 E-value=0.66 Score=44.48 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=30.5
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 367899999986 9999999999999997 57776654
No 158
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.98 E-value=0.21 Score=47.32 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=30.1
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.| .|++|.++++.|++.|. ++.+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 69999999999999997 57776655
No 159
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.97 E-value=0.093 Score=46.92 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=50.4
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCc-eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
||.|||+ |.||+.+|..|+..|+. +|.|+|.+. .|++..+.-+....+..........-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~~ 62 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITSG 62 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhcccccccccc
Confidence 7999999 99999999999999985 599987652 25555555565554444332222111
Q ss_pred CccchHHHhcCCCCEEEEccCC
Q 013156 164 DASSEEEILSGHPDFVLDCIDN 185 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn 185 (448)
+ .+-+.+ .|+||-+...
T Consensus 63 ~----~~~~~~-aDivvitag~ 79 (141)
T PF00056_consen 63 D----YEALKD-ADIVVITAGV 79 (141)
T ss_dssp S----GGGGTT-ESEEEETTST
T ss_pred c----cccccc-ccEEEEeccc
Confidence 1 223343 9999977654
No 160
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.96 E-value=0.75 Score=50.46 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=62.2
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh-------C
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-------F 151 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i-------n 151 (448)
+.-.++.|+|.|+ |++|..+++.|++.|. ++++++.+. .|.+.+.+.+.++ .
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~ 135 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQ 135 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhcccccccc
Confidence 3345667888886 9999999999999996 466654432 1222222222211 1
Q ss_pred CCceEEEEeccCCc-cchHHHhcCCCCEEEEccCCh---------------HHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013156 152 PECHIDAKVLLYDA-SSEEEILSGHPDFVLDCIDNI---------------DTKVALLAACVRRGL-KVLCATGAGA 211 (448)
Q Consensus 152 P~v~v~~~~~~~~~-~~~~~ll~~~~D~Vida~Dn~---------------~~r~~l~~~c~~~~i-p~I~~~g~g~ 211 (448)
+.-+++.+...++. +.....+.+ +|+||.|.... ..-..+.++|...++ .+|..++.|+
T Consensus 136 ~~~~v~iV~gDLtD~esI~~aLgg-iDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga 211 (576)
T PLN03209 136 PVEKLEIVECDLEKPDQIGPALGN-ASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGT 211 (576)
T ss_pred ccCceEEEEecCCCHHHHHHHhcC-CCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchh
Confidence 11224444334433 334455654 99999886421 112345677777664 4666555443
No 161
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.89 Score=44.26 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+++.++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67788999987 6999999999999996 58887754
No 162
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.89 E-value=0.067 Score=53.25 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=29.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
++|.|||+|-+|+.+|.+|+++|. +++++|.+.=
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence 479999999999999999999996 5889987753
No 163
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.89 E-value=0.38 Score=53.20 Aligned_cols=94 Identities=10% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.- +++.++ +. ..+ ++....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~~----~~--g~~--v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVNLMR----KY--GYK--VYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHHH----hC--CCe--EEEeeC
Confidence 57999999999999999999999984 899998842 222221 11 112 222222
Q ss_pred Ccc-chHHHhcCCCCEEEEccCChHHHHHHHHHHHHcC--CcEEE
Q 013156 164 DAS-SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLC 205 (448)
Q Consensus 164 ~~~-~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~--ip~I~ 205 (448)
+.. ...+.--.++|.||.|+||.+....+...+++++ +++|.
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 222 1222212359999999999998888888888763 44554
No 164
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.85 E-value=0.41 Score=46.08 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=42.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+++++.|+|.|+ ||+|.++++.|+..|.. +.++|.+ ..+.+.+.+.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 467889999986 79999999999999974 7776532 23444555566554444555555
Q ss_pred eccC
Q 013156 160 VLLY 163 (448)
Q Consensus 160 ~~~~ 163 (448)
...+
T Consensus 64 ~~Dl 67 (260)
T PRK07063 64 PADV 67 (260)
T ss_pred EccC
Confidence 4444
No 165
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.4 Score=46.25 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.5
Q ss_pred HhhCCcEEEEcC-C-hHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGL-G-GVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~-G-GvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 345688999997 5 8999999999999975 766553
No 166
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.80 E-value=0.13 Score=40.92 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=39.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in 151 (448)
||+|||.|-+|+++|..|++.|. +++|++...--. ......=.+.+.+++++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 688877553211 2233333566677777764
No 167
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.80 E-value=0.65 Score=47.01 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=58.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..+.+|+|.|+|++|..+++.+...|..++.++|.+. .|.+.++ ++.-..-+..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-------------------~~~~~a~----~lGa~~vi~~--- 221 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-------------------RSLSLAR----EMGADKLVNP--- 221 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-------------------HHHHHHH----HcCCcEEecC---
Confidence 3578999999999999999999999998888876542 1222111 1111111111
Q ss_pred cCCccchHHHh--cCCCCEEEEccCChHHHHHHHHHHHHcCCcEEE
Q 013156 162 LYDASSEEEIL--SGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 162 ~~~~~~~~~ll--~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
..++..++. .+.+|+||||+....+-....+.++..|.-++.
T Consensus 222 --~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 222 --QNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --CcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 111111221 124899999999876655666666666653333
No 168
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.72 E-value=0.16 Score=55.37 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=32.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+||+|..++..|+..|+ ++.+++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 667899999999999999999999999 89998764
No 169
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.70 E-value=0.33 Score=53.86 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+.+|+|+|+|-+|..+++.|...|+. ++++|.|.- +++.+++ . ..++ +....
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~~~----~--g~~v--~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD-------------------HIETLRK----F--GMKV--FYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHHHh----c--CCeE--EEEeC
Confidence 57999999999999999999999984 899998852 2222221 1 2222 22222
Q ss_pred Cccc-hHHHhcCCCCEEEEccCChHHHHHHHHHHHHcC
Q 013156 164 DASS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRG 200 (448)
Q Consensus 164 ~~~~-~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ 200 (448)
+... ..+.--.++|.||.|+||.+....+...++++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 2221 111111259999999999999888888888763
No 170
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.66 E-value=0.33 Score=49.04 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHH-hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
.+...++|+|+|+|+.|...++.+.. .|+.++.+.|.+ ..|++.+++++.+.++ .+.
T Consensus 121 a~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~- 178 (304)
T PRK07340 121 APAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE- 178 (304)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE-
Confidence 34457899999999999999999975 578888885443 3577777777765432 222
Q ss_pred EeccCCccchHHHhcCCCCEEEEccCChH
Q 013156 159 KVLLYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
.++.++.+.+ +|+||.||.+..
T Consensus 179 ------~~~~~~av~~-aDiVitaT~s~~ 200 (304)
T PRK07340 179 ------PLDGEAIPEA-VDLVVTATTSRT 200 (304)
T ss_pred ------ECCHHHHhhc-CCEEEEccCCCC
Confidence 1334556664 999999998755
No 171
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.35 Score=51.46 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.-+.+++|+|+|.|+.|-.+|+.|...|. .+++.|.+.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 44567899999999999999999999997 588888553
No 172
>PLN02240 UDP-glucose 4-epimerase
Probab=93.64 E-value=0.81 Score=46.12 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=28.4
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
|++++|+|.|+ |++|+++++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999986 9999999999999995 677776
No 173
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.62 E-value=0.099 Score=53.26 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=32.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++..||.|||+|.+|+.+|..|+..|...+.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4668999999999999999999999986699998653
No 174
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.60 E-value=1 Score=45.52 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhC-CceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSG-VGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsG-Vg~i~LiD~D 117 (448)
+++++|+|.|+ |++|+++++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 45788999986 899999999999987 4578887754
No 175
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.57 E-value=0.4 Score=51.52 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=31.5
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+||+|..++..|+..|+ ++.++|.+
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~ 364 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT 364 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567899999999999999999999998 88887754
No 176
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.57 E-value=0.53 Score=50.80 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=72.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCCh---HHHHHHHHhhhh-CCCceEEEEe
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP---KALCLKKHFSSI-FPECHIDAKV 160 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~---Kv~~~~~~l~~i-nP~v~v~~~~ 160 (448)
.+|.+||+|-.|+.+|.+|++.|. ++++.|.+.=....+... ...-|.. -+..+++....+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 588877642211111110 0000211 122233333332 3555444433
Q ss_pred ccCC-ccchHHHhc--CCCCEEEEccCC-hHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 161 LLYD-ASSEEEILS--GHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 161 ~~~~-~~~~~~ll~--~~~D~Vida~Dn-~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
..-. .+-.+.++. .+=|+||||+.. ++.-..+.+.+.++|+.++.+.-.|+
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 2110 111122222 135899999886 56677778999999999999887765
No 177
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.56 E-value=0.18 Score=49.88 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=24.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhC--CceEEEEeCC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D 117 (448)
+|.|||||.+|..++..|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 7999999999999999998764 3334444544
No 178
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.55 E-value=0.27 Score=51.49 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=77.1
Q ss_pred HHhhhhHhccCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccccccc
Q 013156 65 EQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL 124 (448)
Q Consensus 65 e~~~Rq~~~~G~e~q------------------~~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL 124 (448)
.||.-+|..|..+-| ++|++.+|++.|+|..|..++..|...|+. +|.++|.-=+-..
T Consensus 162 lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~-- 239 (432)
T COG0281 162 LRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYD-- 239 (432)
T ss_pred HhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccC--
Confidence 455556777765543 479999999999999999999999999998 9999997633211
Q ss_pred cccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCChHH-HHHHHHHHHHcCCcE
Q 013156 125 NRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDT-KVALLAACVRRGLKV 203 (448)
Q Consensus 125 nRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~-r~~l~~~c~~~~ip~ 203 (448)
.|.-+ +.++.|.+.+.+...... . .+.+.+ +|+.|.|+..-.. ...+-+++.. |+
T Consensus 240 ~r~~~----~~~~~k~~~a~~~~~~~~---~-------------~~~~~~-adv~iG~S~~G~~t~e~V~~Ma~~---Pi 295 (432)
T COG0281 240 GREDL----TMNQKKYAKAIEDTGERT---L-------------DLALAG-ADVLIGVSGVGAFTEEMVKEMAKH---PI 295 (432)
T ss_pred CCccc----ccchHHHHHHHhhhcccc---c-------------cccccC-CCEEEEcCCCCCcCHHHHHHhccC---CE
Confidence 11110 246666665543322211 1 113344 9999999986333 3444455443 99
Q ss_pred EEEcC
Q 013156 204 LCATG 208 (448)
Q Consensus 204 I~~~g 208 (448)
|..+.
T Consensus 296 Ifala 300 (432)
T COG0281 296 IFALA 300 (432)
T ss_pred EeecC
Confidence 99875
No 179
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.55 E-value=0.39 Score=49.21 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=30.7
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEe
Q 013156 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 79 q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD 115 (448)
...|++++|.|||+|..|..+|.+|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 456889999999999999999999999998 455543
No 180
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.52 E-value=0.31 Score=49.46 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..+++++|.|||+|.+|..+|+.|...|+ ++..+|... .. . +. +...
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~~-----~-----------------~~--~~~~ 178 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------KS-----W-----------------PG--VQSF 178 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------CC-----C-----------------CC--ceee
Confidence 35889999999999999999999999997 466666421 00 0 00 1111
Q ss_pred eccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHH
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLA 194 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~ 194 (448)
......++++.. .|+|+.|.. +.+++..+++
T Consensus 179 ---~~~~~l~e~l~~-aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 179 ---AGREELSAFLSQ-TRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred ---cccccHHHHHhc-CCEEEECCCCCHHHHHHhHH
Confidence 123456777875 999998886 5667777764
No 181
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.51 E-value=0.41 Score=48.65 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=56.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+.+|+|+|+|++|..++..+...|+ ++..+|.... ...|.+.++ ++.-. .+......
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~----------------~~~~~~~~~----~~Ga~-~v~~~~~~ 229 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDP----------------PDPKADIVE----ELGAT-YVNSSKTP 229 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCC----------------CHHHHHHHH----HcCCE-EecCCccc
Confidence 57899999999999999999999998 5777765321 112222221 11111 11110010
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEE
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
+.. ... .+.+|+||||+.....-....+..+..|.-++.
T Consensus 230 ~~~---~~~-~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 230 VAE---VKL-VGEFDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred hhh---hhh-cCCCCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 100 011 234999999999766555555666666654433
No 182
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.49 E-value=0.42 Score=48.69 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=55.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..++++|+|+|+.|-..+..|. ..++.+++|++.+ ..|++.+++++.+..+ +++...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~-- 185 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAA-- 185 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence 3568999999999999999997 4788999995332 2477777777765433 333322
Q ss_pred cCCccchHHHhcCCCCEEEEccCChH
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
++.++.+.+ +|+|+.||.+..
T Consensus 186 ----~~~~~av~~-aDiVvtaT~s~~ 206 (326)
T TIGR02992 186 ----TDPRAAMSG-ADIIVTTTPSET 206 (326)
T ss_pred ----CCHHHHhcc-CCEEEEecCCCC
Confidence 334556664 999999997743
No 183
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.46 E-value=1 Score=42.38 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=29.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 34678999986 89999999999999986 7887665
No 184
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.39 E-value=1.1 Score=45.83 Aligned_cols=161 Identities=24% Similarity=0.282 Sum_probs=93.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-.-.. + ....
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~-----------------~-----------------~~~~ 183 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE-----------------R-----------------AGVD 183 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh-----------------h-----------------hccc
Confidence 68899999999999999999999999976 44544311000 0 0000
Q ss_pred ccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHH---cCCcEEEEcCCCCccCCCceeecccccccCCchhHHHH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVR 236 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~---~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r 236 (448)
.....++.++++.. .|+|+..+- +.+|+-.|++.--. .|.-+|+++ -|.-. ..+.|.+++.
T Consensus 184 ~~~~~~~Ld~lL~~-sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a-RG~vV-------------de~aL~~AL~ 248 (324)
T COG0111 184 GVVGVDSLDELLAE-ADILTLHLPLTPETRGLINAEELAKMKPGAILINAA-RGGVV-------------DEDALLAALD 248 (324)
T ss_pred cceecccHHHHHhh-CCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC-Cccee-------------cHHHHHHHHH
Confidence 11223456788875 999888775 56677777744332 344466643 33222 2344554443
Q ss_pred HHhhhhcCccCCce-EEecCCCcccc--CCCCCCCCCCCCCCCCCcccCCCcccccCccc----chHHHHHHHHHHHHHH
Q 013156 237 HRLRKDYGIEGGIP-VVFSLEKPKAK--LLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG----SIPAIFGMVMASHVVT 309 (448)
Q Consensus 237 ~~l~~~~g~~g~i~-~v~s~e~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg----~~~~i~G~~~A~~vl~ 309 (448)
.|-..|.- =||+.|++... ++.+ |+ +-..|=+| ....-++-+.+..+.+
T Consensus 249 ------~G~i~gA~lDVf~~EPl~~~~pL~~~----------------pn--V~~TPHia~~T~ea~~~~~~~~~~~i~~ 304 (324)
T COG0111 249 ------SGKIAGAALDVFEEEPLPADSPLWDL----------------PN--VILTPHIGGSTDEAQERVAEIVAENIVR 304 (324)
T ss_pred ------cCCcceEEecCCCCCCCCCCChhhcC----------------CC--eEECCcccccCHHHHHHHHHHHHHHHHH
Confidence 23222222 26777754321 2211 11 22233343 2356778888899999
Q ss_pred HHHcCC
Q 013156 310 QLAERQ 315 (448)
Q Consensus 310 ~l~g~~ 315 (448)
++.|.+
T Consensus 305 ~l~g~~ 310 (324)
T COG0111 305 YLAGGP 310 (324)
T ss_pred HHcCCC
Confidence 998875
No 185
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.37 E-value=0.41 Score=48.41 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=56.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|.|+|+|.+|+.++..|+++| .++++++.+.=....++.+-- ....+.. ....+.+++ +.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~-~~~~~~~----------~~~~~~i~~-------~~ 62 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRK-NLKYLPT----------CHLPDNISV-------KS 62 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCC-CcccCCC----------CcCCCCeEE-------eC
Confidence 5999999999999999999999 457888765422222222100 0000000 001111211 11
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHH-H--cCCcEEE
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACV-R--RGLKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~-~--~~ip~I~ 205 (448)
+..+.+.+.+|+||-|+-+...+..+.++.. . .+.+++.
T Consensus 63 -~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 63 -AIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred -CHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 2223333348999999999888877776643 2 3445555
No 186
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.36 E-value=0.33 Score=41.51 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=46.0
Q ss_pred cCChHHHHHHHHHHHhC----CceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCcc
Q 013156 91 GLGGVGSHAAAMLLRSG----VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166 (448)
Q Consensus 91 G~GGvGs~va~~LarsG----Vg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~ 166 (448)
|+|.+|+.+++.|.+.. +.-..+.|.+. +.... ..... +...+ ..
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~----------~~~~~------------~~~~~-~~~~~--------~~ 49 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM----------LISKD------------WAASF-PDEAF--------TT 49 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE----------EEETT------------HHHHH-THSCE--------ES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc----------hhhhh------------hhhhc-ccccc--------cC
Confidence 89999999999999774 44444544440 11110 11111 11111 12
Q ss_pred chHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 167 SEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 167 ~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+.++++. ..+|+||||+.+-... .....+.++|+.+|.+.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~L~~G~~VVt~n 90 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVA-EYYEKALERGKHVVTAN 90 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHH-HHHHHHHHTTCEEEES-
T ss_pred CHHHHhcCcCCCEEEECCCchHHH-HHHHHHHHCCCeEEEEC
Confidence 3445555 2499999996664444 45567778999999864
No 187
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.35 E-value=0.28 Score=47.63 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=58.0
Q ss_pred hhCCcEEEE-cCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 82 VSGSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+++++++++ ||||+|-..++.|...|+..+.+.|.- +| -.+...|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 467788877 799999999999999999988885532 12 22346899999999998887
Q ss_pred ccCCc-cchHHHh------cCCCCEEEEcc
Q 013156 161 LLYDA-SSEEEIL------SGHPDFVLDCI 183 (448)
Q Consensus 161 ~~~~~-~~~~~ll------~~~~D~Vida~ 183 (448)
-.++. ......+ .+..|++|+..
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 76654 2222222 13578888654
No 188
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.35 E-value=0.2 Score=52.76 Aligned_cols=36 Identities=31% Similarity=0.477 Sum_probs=32.6
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|+|.+|..++..|...|. ++.++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 679999999999999999999999998 588888765
No 189
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.6 Score=44.87 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=31.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++++++|+|.|+ ||+|+++++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 477899999986 8999999999999997 488888764
No 190
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.24 E-value=0.11 Score=52.69 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=30.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCc-eEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~ 116 (448)
+..||.|||+|.||+.+|..|+..|+- +|.|+|-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 356999999999999999999999985 7999875
No 191
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.21 E-value=0.37 Score=47.12 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC--ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|.|||+|.+|+.++..|.++|. .++.++|.+. .+.+.+++.+ .+++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~~-----g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEEY-----GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHhc-----CCee------
Confidence 479999999999999999999984 3455654321 1222222211 1111
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
. .+..+.+. ++|+||-|+-....+..+..+....+..+|+..
T Consensus 53 -~-~~~~~~~~-~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~ 94 (267)
T PRK11880 53 -A-TDNQEAAQ-EADVVVLAVKPQVMEEVLSELKGQLDKLVVSIA 94 (267)
T ss_pred -c-CChHHHHh-cCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEec
Confidence 1 12234444 499999999777666666554433345566654
No 192
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.15 E-value=0.9 Score=46.11 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=29.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ |++|+++++.|++.|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999996 8899999999999995 47776654
No 193
>PRK12862 malic enzyme; Reviewed
Probab=93.12 E-value=0.36 Score=54.76 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=69.5
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|++.||++.|+|..|..+++.|+..|+. +|.++|..=+=..+- .++....|...+++. |+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r-------~~~l~~~~~~~a~~~----~~----- 252 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR-------TELMDPWKARYAQKT----DA----- 252 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC-------CccccHHHHHHhhhc----cc-----
Confidence 478999999999999999999999999995 899999664322111 011334455544431 22
Q ss_pred EEeccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.+.+.+ +|++|.++. +.=++..+-.+| ..|+|.+..
T Consensus 253 --------~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~---~~piifals 292 (763)
T PRK12862 253 --------RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMA---PRPLIFALA 292 (763)
T ss_pred --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhc---cCCEEEeCC
Confidence 256677776 899998776 223455666666 679998875
No 194
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.44 Score=50.24 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=30.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|.|++|..+|..|++.|. ++.+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 58887754
No 195
>PLN02427 UDP-apiose/xylose synthase
Probab=92.96 E-value=0.75 Score=47.40 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=29.8
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++..+|+|.|+ |-+|+++++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 4567788999985 999999999999985336777764
No 196
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.86 E-value=0.44 Score=55.19 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=34.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSS 123 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sN 123 (448)
-.+++|+|||.|..|-.+|..|++.|.. ++++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence 4688999999999999999999999965 9999986554433
No 197
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.83 E-value=0.61 Score=49.31 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=31.0
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|.|+.|..+|..|+..|. ++++.|.+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 457899999999999999999999996 588887543
No 198
>PRK12827 short chain dehydrogenase; Provisional
Probab=92.81 E-value=1.8 Score=40.88 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=27.8
Q ss_pred hhCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEe
Q 013156 82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD 115 (448)
+++++++|.| .|++|.++++.|+..|.. +.+++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 5678899998 589999999999999974 67766
No 199
>PLN02214 cinnamoyl-CoA reductase
Probab=92.77 E-value=1.6 Score=44.42 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=61.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+++++|+|.|+ |.+|++++..|+..|. +++.++.+. ++. +... ...+....+ +++.+.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~~-~~~~~~~~~--~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNTH-LRELEGGKE--RLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHHH-HHHhhCCCC--cEEEEe
Confidence 56788999998 9999999999999996 465544321 000 0000 111111112 233333
Q ss_pred ccC-CccchHHHhcCCCCEEEEccCC------------hHHHHHHHHHHHHcCC-cEEEEcCC
Q 013156 161 LLY-DASSEEEILSGHPDFVLDCIDN------------IDTKVALLAACVRRGL-KVLCATGA 209 (448)
Q Consensus 161 ~~~-~~~~~~~ll~~~~D~Vida~Dn------------~~~r~~l~~~c~~~~i-p~I~~~g~ 209 (448)
..+ +.+...+.+.+ +|+||.+... ...-..+.++|++.++ .+|..++.
T Consensus 67 ~Dl~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 67 ADLQDYEALKAAIDG-CDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred cCcCChHHHHHHHhc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 333 33345556665 8999987632 2223467788988886 47665543
No 200
>PLN02494 adenosylhomocysteinase
Probab=92.75 E-value=0.26 Score=52.74 Aligned_cols=36 Identities=31% Similarity=0.640 Sum_probs=32.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+++|+|+|+|.+|..+|..+...|+ ++.++|.|.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 678999999999999999999999998 688888664
No 201
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.74 E-value=0.65 Score=51.77 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++|+|||+|..|-.+|..|++.|.. ++++|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 578999999999999999999999975 9999865
No 202
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.72 E-value=0.49 Score=49.16 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=61.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCC------ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhh--hhCCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS--SIFPEC 154 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV------g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~--~inP~v 154 (448)
...+|.|+|+|.-|+.+|..|++.|. .+++|+..|..- -++.-++.+.+.=. ..-|.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~~~~~in~~~~N~~ylp~~ 75 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEKLSDIINTKHENVKYLPGI 75 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchHHHHHHHhcCCCcccCCCC
Confidence 35689999999999999999999884 467776544310 01111222221100 111333
Q ss_pred eEEEEeccC--CccchHHHhcCCCCEEEEccCChHHHHHHHHHHH----HcCCcEEEEc
Q 013156 155 HIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV----RRGLKVLCAT 207 (448)
Q Consensus 155 ~v~~~~~~~--~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~----~~~ip~I~~~ 207 (448)
++ +..+ +. +..+.+.+ .|+||-|+.+...+..+.++.. ..+.++|+..
T Consensus 76 ~L---p~ni~~ts-dl~eav~~-aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 76 KL---PDNIVAVS-DLKEAVED-ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred cC---CCceEEec-CHHHHHhc-CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence 22 1111 22 33455664 9999999999888877776643 2344666643
No 203
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.70 E-value=0.23 Score=49.35 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=25.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHh--CCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRS--GVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~Lars--GVg~i~LiD~D 117 (448)
+..+|.|||||.+|..++..|... |+.-..+.|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 346899999999999999999874 43322344543
No 204
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.68 E-value=1 Score=47.00 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=59.6
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
..+|+|+|+ |.+|+++++.|...|. ++++++.+.-.... +.. .+.+....+.+++ +...
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~-------------~~~----~~~~~~~~~~v~~--v~~D 119 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRG-------------KNG----KEDTKKELPGAEV--VFGD 119 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccc-------------cch----hhHHhhhcCCceE--EEee
Confidence 457999987 9999999999999996 46665543210000 000 0111112334443 2233
Q ss_pred C-CccchHHHhcC---CCCEEEEccCC------------hHHHHHHHHHHHHcCCc-EEEEcCC
Q 013156 163 Y-DASSEEEILSG---HPDFVLDCIDN------------IDTKVALLAACVRRGLK-VLCATGA 209 (448)
Q Consensus 163 ~-~~~~~~~ll~~---~~D~Vida~Dn------------~~~r~~l~~~c~~~~ip-~I~~~g~ 209 (448)
+ +.+.....+.+ ++|+||.|... ...-..+.+.|++.++. +|..++.
T Consensus 120 l~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~ 183 (390)
T PLN02657 120 VTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI 183 (390)
T ss_pred CCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 3 33445555553 48999988642 11223567888888876 6554443
No 205
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=92.65 E-value=0.46 Score=47.32 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=25.5
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ |-+|+++++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 6999987 999999999999888 57777653
No 206
>PRK08291 ectoine utilization protein EutC; Validated
Probab=92.61 E-value=0.7 Score=47.13 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.++|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++++++..+ +++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~g-~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAELG-IPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccC-ceEEEe---
Confidence 4689999999999999999985 578999996432 2366777776654332 333322
Q ss_pred CCccchHHHhcCCCCEEEEccCChH
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
++.++.+.+ +|+||.|+....
T Consensus 189 ---~d~~~al~~-aDiVi~aT~s~~ 209 (330)
T PRK08291 189 ---RDVHEAVAG-ADIIVTTTPSEE 209 (330)
T ss_pred ---CCHHHHHcc-CCEEEEeeCCCC
Confidence 234556664 999999997643
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.60 E-value=0.96 Score=46.48 Aligned_cols=93 Identities=26% Similarity=0.292 Sum_probs=61.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|+|+|+||+|...+++....| -+++.+ |++..|.+.+++.-.. .-| +..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~-------------------~~~~~K~e~a~~lGAd----~~i---~~~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAI-------------------TRSEEKLELAKKLGAD----HVI---NSS- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEE-------------------eCChHHHHHHHHhCCc----EEE---EcC-
Confidence 789999999999999999999999 556654 4455676666544222 112 222
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
+++....+-. .+|+||++.. ..+-....+.++..|.-++-+
T Consensus 219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 3333333333 3999999999 666666667777777755543
No 208
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.56 E-value=0.56 Score=47.10 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=28.2
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.++++.++|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R 46 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR 46 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788888875 7899999999999995 5777554
No 209
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.49 Score=45.99 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=32.6
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 78 ~q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.++++++|+|.|+ ||+|+.+++.|+..|.. +.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 345688999999987 89999999999999965 7777654
No 210
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.47 E-value=0.22 Score=46.17 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=53.8
Q ss_pred HHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEE
Q 013156 79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 79 q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
...|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-... .....
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~-----------------------~~~~~-------- 78 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE-----------------------GADEF-------- 78 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH-----------------------HHHHT--------
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh-----------------------hcccc--------
Confidence 357899999999999999999999999998 6777776532211 00000
Q ss_pred EeccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHH
Q 013156 159 KVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR 198 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~ 198 (448)
.+...+.++++.. .|+|+.+.. +.+++..+++..-+
T Consensus 79 ---~~~~~~l~ell~~-aDiv~~~~plt~~T~~li~~~~l~ 115 (178)
T PF02826_consen 79 ---GVEYVSLDELLAQ-ADIVSLHLPLTPETRGLINAEFLA 115 (178)
T ss_dssp ---TEEESSHHHHHHH--SEEEE-SSSSTTTTTSBSHHHHH
T ss_pred ---cceeeehhhhcch-hhhhhhhhccccccceeeeeeeee
Confidence 0122345677775 899988876 55666666654443
No 211
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.45 E-value=1.7 Score=44.21 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++.++|+|.|+ |=+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 566789999985 9999999999999985 67777754
No 212
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.45 E-value=0.85 Score=43.23 Aligned_cols=35 Identities=29% Similarity=0.565 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999998 9999999999999996 57777744
No 213
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.45 E-value=0.54 Score=44.92 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=54.1
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCC--CceEEEEecc
Q 013156 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP--ECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP--~v~v~~~~~~ 162 (448)
+|.||| +|.+|+.++..|++.| .++.++|.+. .|++.+.+....... .+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~-- 59 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTG-- 59 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEE--
Confidence 699997 8999999999999999 5677765432 222222222211111 01111110
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH-cCCcEEEE
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCA 206 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~-~~ip~I~~ 206 (448)
.+..+.+. ++|+||-|+-.......+.++... .+..+|+.
T Consensus 60 ---~~~~ea~~-~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 60 ---ADNAEAAK-RADVVILAVPWDHVLKTLESLRDELSGKLVISP 100 (219)
T ss_pred ---eChHHHHh-cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEe
Confidence 01233444 389999999887776666555432 34445554
No 214
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.45 E-value=0.84 Score=46.27 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=28.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 58888864
No 215
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.44 E-value=0.36 Score=48.88 Aligned_cols=97 Identities=21% Similarity=0.332 Sum_probs=63.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccc--------cccccccccccCCccCChHHHHHHHHhhhhCCCceE
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS--------VSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI 156 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~--------~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v 156 (448)
++|.|||+|-.|+-+|..++.+|. .+++.|-..=. ..+|.|+. .-|+-+-+.....+.++.|...+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~ 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence 689999999999999999999664 48898877322 12233322 22555555556666666654332
Q ss_pred EEEeccCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHHcCC
Q 013156 157 DAKVLLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRRGL 201 (448)
Q Consensus 157 ~~~~~~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~~~i 201 (448)
. -+.+ +|+||.++ .|.+.|..+.+..-..-.
T Consensus 78 ~-------------~l~~-~DlVIEAv~E~levK~~vf~~l~~~~~ 109 (307)
T COG1250 78 A-------------ALKD-ADLVIEAVVEDLELKKQVFAELEALAK 109 (307)
T ss_pred h-------------Hhcc-CCEEEEeccccHHHHHHHHHHHHhhcC
Confidence 2 2343 99999887 578888776655544443
No 216
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=92.44 E-value=0.53 Score=48.24 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=51.2
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..+.+++|.|+|+|++|+.+|+.|...| ..|.- . +|+. ..+ +...+...+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-~---------~r~~-------~~~--~~~~~~~~~---------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-H---------SRTQ-------LPP--EEAYEYYAE---------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-e---------cccC-------Cch--hhHHHhccc----------
Confidence 5789999999999999999999999866 33333 1 1211 111 111111111
Q ss_pred eccCCccchHHHhcCCCCEEE-EccCChHHHHHHHHHH
Q 013156 160 VLLYDASSEEEILSGHPDFVL-DCIDNIDTKVALLAAC 196 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vi-da~Dn~~~r~~l~~~c 196 (448)
....++++.. .|+|+ .|-.+.+++..+|+..
T Consensus 208 -----~~d~~~~~~~-sD~ivv~~pLt~~T~~liNk~~ 239 (336)
T KOG0069|consen 208 -----FVDIEELLAN-SDVIVVNCPLTKETRHLINKKF 239 (336)
T ss_pred -----ccCHHHHHhh-CCEEEEecCCCHHHHHHhhHHH
Confidence 2345666664 88665 5667889999998443
No 217
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.43 E-value=1.2 Score=44.64 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=30.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 47899999999999999999999998877776643
No 218
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.41 E-value=0.75 Score=46.85 Aligned_cols=35 Identities=43% Similarity=0.657 Sum_probs=29.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~ 210 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDID 210 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 36899999999999999998888998878777653
No 219
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.35 E-value=1 Score=47.96 Aligned_cols=106 Identities=27% Similarity=0.254 Sum_probs=61.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+-++++|+|.|+ |-+|++++..|...|. +++.+|.+... | +.. ....+ .++.+ +.+
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~-----~------------~~~-~~~~~--~~~~~--~~i 172 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG-----R------------KEN-VMHHF--SNPNF--ELI 172 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc-----c------------hhh-hhhhc--cCCce--EEE
Confidence 345688999985 9999999999999996 46666643211 0 000 00011 12222 222
Q ss_pred eccCCccchHHHhcCCCCEEEEccCC---------h--------HHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDN---------I--------DTKVALLAACVRRGLKVLCATGAGARAD 214 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn---------~--------~~r~~l~~~c~~~~ip~I~~~g~g~~~d 214 (448)
...+ .+..+.+ +|+||.+... . ..-..|.++|++.++++|..++.....+
T Consensus 173 ~~D~----~~~~l~~-~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~ 239 (442)
T PLN02206 173 RHDV----VEPILLE-VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 239 (442)
T ss_pred ECCc----cChhhcC-CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCC
Confidence 2221 1223343 8999877631 1 1124577899999999998776644333
No 220
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=92.35 E-value=0.15 Score=50.01 Aligned_cols=35 Identities=37% Similarity=0.592 Sum_probs=30.5
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD 115 (448)
.++.++|+|-|.|.||+++|+.|...|..-+.+-|
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD 63 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSD 63 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence 58899999999999999999999999966555544
No 221
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.35 E-value=1 Score=44.44 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|+|.|+-|-|..++..|...|..-+..+ ..+-|... +.. .+.. ..+...++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~-----------------~t~~~~~~-------~~~-~g~~--~v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTV-----------------TTSEGKHL-------YPI-HQAL--TVHTGALD 53 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEE-----------------ccCCcccc-------ccc-cCCc--eEEECCCC
Confidence 379999997889999999999985433221 11222211 111 1111 22334566
Q ss_pred ccchHHHhc-CCCCEEEEccCChHHHH--HHHHHHHHcCCcEEEEc
Q 013156 165 ASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCAT 207 (448)
Q Consensus 165 ~~~~~~ll~-~~~D~Vida~Dn~~~r~--~l~~~c~~~~ip~I~~~ 207 (448)
.+...+++. .++|+||||+..++... .+.+.|.+.++|++--.
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 665555654 35999999999998754 67799999999999853
No 222
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.33 E-value=0.42 Score=47.99 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC-ceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
..+|+|||+|.+|+.++..|.+.|. .++.++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3579999999999999999999997 478887764
No 223
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.31 E-value=1 Score=45.49 Aligned_cols=122 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred cEEEE-cCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccC------CccCChHHHHHHHHhhhhCCCceEEE
Q 013156 86 YVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR------ADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 86 ~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~------~diG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
+|||. |+|=+||+++..|..+|.. +.++|+ ++|=+|..+... .|+.- .+.+.+.+.+.+|+.-|+.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViHF 74 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVHF 74 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEEC
Confidence 57777 7999999999999999965 677674 334444433221 22222 2344455555555544443
Q ss_pred EeccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceeec
Q 013156 159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA 221 (448)
Q Consensus 159 ~~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip-~I~~~g~g~~~dp~~i~i~ 221 (448)
-....-.|+...-+.- || .|.-.-..|.+.|+++++. +|.++.+...++|+.+-|.
T Consensus 75 Aa~~~VgESv~~Pl~Y-y~------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~ 131 (329)
T COG1087 75 AASISVGESVQNPLKY-YD------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPIS 131 (329)
T ss_pred ccccccchhhhCHHHH-Hh------hchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccC
Confidence 2222222222221211 11 2444455788889988865 7778888888999885443
No 224
>PLN02740 Alcohol dehydrogenase-like
Probab=92.29 E-value=1.1 Score=46.32 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=30.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 36789999999999999999999998888887654
No 225
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.78 Score=44.01 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=28.6
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++.++|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67889999998 8999999999999997 4666543
No 226
>PRK07680 late competence protein ComER; Validated
Probab=92.24 E-value=1.7 Score=42.90 Aligned_cols=90 Identities=23% Similarity=0.403 Sum_probs=53.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|.+|+.++..|.++|. ..+.++|.+. .+++.+. +..+.+++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~~~----~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYHIK----ERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHHHH----HHcCCeEEE-----
Confidence 58999999999999999999985 4566654432 1222222 222222221
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH--cCCcEEEEc
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~--~~ip~I~~~ 207 (448)
.+..+.+. ++|+||-|+-.......+.++... .+..+|+.+
T Consensus 54 ---~~~~~~~~-~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ 96 (273)
T PRK07680 54 ---KTIEEVIS-QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSIT 96 (273)
T ss_pred ---CCHHHHHH-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 12234444 499999999766655555544322 244455544
No 227
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.16 E-value=0.19 Score=50.97 Aligned_cols=31 Identities=39% Similarity=0.610 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-ceEEEEeC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
||.|||+|.||+.+|..|+..|+ ++|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999999997 67999874
No 228
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.10 E-value=0.79 Score=45.56 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999996 688887664
No 229
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.10 E-value=2.3 Score=40.39 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=63.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
|+|+|+ |.+|+.++..|...|.. ++. +.|.. + ....+.++. +.+++. .....+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~----------l~R~~----------~-~~~~~~l~~--~g~~vv-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRA----------LVRDP----------S-SDRAQQLQA--LGAEVV-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEE----------EESSS----------H-HHHHHHHHH--TTTEEE-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEE----------EEecc----------c-hhhhhhhhc--ccceEe-ecccCCH
Confidence 789997 99999999999997744 665 22221 1 111223333 244443 2223355
Q ss_pred cchHHHhcCCCCEEEEccCC-----hHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 166 SSEEEILSGHPDFVLDCIDN-----IDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn-----~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
+.+.+.+.+ .|.|+.++.. .+....+.++|.+.|++.+--+..+.
T Consensus 56 ~~l~~al~g-~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 56 ESLVAALKG-VDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHTT-CSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred HHHHHHHcC-CceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 667777887 9999999983 23345788999999999877555544
No 230
>PRK12861 malic enzyme; Reviewed
Probab=92.09 E-value=0.58 Score=52.95 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=78.8
Q ss_pred HHHHhhh--hHhccCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccc
Q 013156 63 VAEQLTR--NIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVS 120 (448)
Q Consensus 63 ~~e~~~R--q~~~~G~e~q------------------~~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~ 120 (448)
+.++|.. ++..|..+-| ++|++.||++.|+|..|..+++.|...|+. +|.++|..=+=
T Consensus 148 il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli 227 (764)
T PRK12861 148 VERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVV 227 (764)
T ss_pred HHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCee
Confidence 4466654 4667765433 478899999999999999999999999996 89999966532
Q ss_pred cccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCccchHHHhcCCCCEEEEccCC-hHHHHHHHHHHHHc
Q 013156 121 VSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN-IDTKVALLAACVRR 199 (448)
Q Consensus 121 ~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~Vida~Dn-~~~r~~l~~~c~~~ 199 (448)
..+ |. ......|...++. .|+ .++.+.+.+ +|++|.++.. .=++..+-.++.
T Consensus 228 ~~~--r~-----~~l~~~k~~~a~~----~~~-------------~~L~eai~~-advliG~S~~g~ft~e~v~~Ma~-- 280 (764)
T PRK12861 228 YRG--RT-----TLMDPDKERFAQE----TDA-------------RTLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAA-- 280 (764)
T ss_pred eCC--Cc-----ccCCHHHHHHHhh----cCC-------------CCHHHHHhc-CCEEEEcCCCCCCCHHHHHHhcc--
Confidence 211 10 1133345554433 122 256677776 8999988752 234556666654
Q ss_pred CCcEEEEcC
Q 013156 200 GLKVLCATG 208 (448)
Q Consensus 200 ~ip~I~~~g 208 (448)
.|+|.+..
T Consensus 281 -~PIIFaLs 288 (764)
T PRK12861 281 -RPLILALA 288 (764)
T ss_pred -CCEEEECC
Confidence 79999875
No 231
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.06 E-value=0.98 Score=52.63 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=57.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC-CCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in-P~v~v~~~~~ 161 (448)
.+++|+|||+|..|-.+|..|++.|. +++|+|... .+.-...|.-.+.-.+| +++.+++..+. -.+++..-..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~~ 378 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNFV 378 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeEE
Confidence 58999999999999999999999997 599998642 22222222222222344 33333333332 1344433221
Q ss_pred cCCc-cchHHHhcCCCCEEEEccCCh
Q 013156 162 LYDA-SSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 162 ~~~~-~~~~~ll~~~~D~Vida~Dn~ 186 (448)
+.. -..+++....||.||-|+...
T Consensus 379 -vG~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 379 -VGKTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred -eccEEeHHHhccccCCEEEEeCCCC
Confidence 111 134455543599999999863
No 232
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=92.04 E-value=0.6 Score=52.78 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|.+.||++.|+|..|..+++.|...|+. +|.++|..=+=..+ | ..+....|.+.+++ -|+
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~--r-----~~~~~~~k~~~a~~----~~~----- 244 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKG--R-----TEGMDEWKAAYAVD----TDA----- 244 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCC--C-----cccccHHHHHHhcc----CCC-----
Confidence 478999999999999999999999999995 89999866431111 0 01233444443332 111
Q ss_pred EEeccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.++.+.+.+ +|++|.++. +.=++..+-.++. .|+|.+..
T Consensus 245 --------~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~---~piifals 284 (752)
T PRK07232 245 --------RTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMAD---NPIIFALA 284 (752)
T ss_pred --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhcc---CCEEEecC
Confidence 356777776 899998776 2334556666663 79998874
No 233
>PRK06194 hypothetical protein; Provisional
Probab=92.04 E-value=0.67 Score=45.30 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=29.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ ||+|+++++.|++.|. ++.++|.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~ 39 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ 39 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356778999975 8999999999999997 58887754
No 234
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.01 E-value=0.98 Score=47.83 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=52.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--------C--CceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRS--------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE 153 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars--------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~ 153 (448)
.-+|.|+|+|.+|+.+++.|... | +.-..++|.|.- +.. .... +.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~------~~~-----~~~~--------------~~ 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE------KDR-----GVDL--------------PG 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh------hcc-----CCCC--------------cc
Confidence 35899999999999999888543 3 223334455421 110 0000 00
Q ss_pred ceEEEEeccCCccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 154 CHIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
.. +. .+.++++. .+.|+|++|+........+...|.++|+.++++
T Consensus 58 ~~-------~~-~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta 103 (426)
T PRK06349 58 IL-------LT-TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA 103 (426)
T ss_pred cc-------ee-CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc
Confidence 00 01 23445553 247888888876666666667777788877764
No 235
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.98 E-value=0.44 Score=48.28 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEE
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLV 114 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~Li 114 (448)
.+|+|+|+|++||..+..|+++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 37999999999999999999999 766663
No 236
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.96 E-value=1.7 Score=43.55 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=58.8
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC-
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
+|+|.|+ |-+|++++..|...|. +++.++.+. .+.. .+.. +.+ +.+...+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~~v--~~v~~Dl~ 53 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--WGA--ELVYGDLS 53 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--cCC--EEEECCCC
Confidence 6999996 9999999999999996 477654331 0111 1111 123 3333333
Q ss_pred CccchHHHhcCCCCEEEEccCCh------------HHHHHHHHHHHHcCC-cEEEEcCCC
Q 013156 164 DASSEEEILSGHPDFVLDCIDNI------------DTKVALLAACVRRGL-KVLCATGAG 210 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~------------~~r~~l~~~c~~~~i-p~I~~~g~g 210 (448)
+.+.....+.+ +|+||.+.... .....+.++|++.++ .+|..++.|
T Consensus 54 d~~~l~~al~g-~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~ 112 (317)
T CHL00194 54 LPETLPPSFKG-VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN 112 (317)
T ss_pred CHHHHHHHHCC-CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 33445566776 89999875421 222457789998886 466665544
No 237
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.93 E-value=1 Score=43.26 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=26.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|+|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARN 34 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57899988 9999999999999996 67776643
No 238
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.90 E-value=0.89 Score=45.02 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=55.7
Q ss_pred cEEEEc-CChHHHHHHHHHHH-hCCceEEEEe-CCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 86 YVVVIG-LGGVGSHAAAMLLR-SGVGRLLLVD-FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~Lar-sGVg~i~LiD-~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|+| +|..|..++..+.. .++.-.-++| .+.-. .. .+.|. +....+ ..+...
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~---~~-------~~~~~---------~~~~~~-~gv~~~--- 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL---QG-------TDAGE---------LAGIGK-VGVPVT--- 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cC-------CCHHH---------hcCcCc-CCceee---
Confidence 799999 59999999999986 4666666666 22110 00 01111 111111 011111
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.+.+++ ...+|+||||+ +++.-..+...|.++|+|++.+..
T Consensus 60 ---~d~~~l-~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 60 ---DDLEAV-ETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred ---CCHHHh-cCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence 123333 23488888888 566677778888888888887553
No 239
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.89 E-value=1.1 Score=44.40 Aligned_cols=36 Identities=39% Similarity=0.645 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999986 8999999999999997 57777654
No 240
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.84 E-value=1.7 Score=43.17 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=55.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+|.|||+|.+|+.++..|.+.|. .++.++|.+.- .|.+.+ ....+.+++
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~~l----~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFNQL----YDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHHHH----HHHcCCeEE------
Confidence 69999999999999999999983 46666655320 111111 112222221
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHH--HcCCcEEEEc
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT 207 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~--~~~ip~I~~~ 207 (448)
. .+..+.+. ++|+||-|+-....+..+.++.. ..+..+|+..
T Consensus 55 -~-~~~~e~~~-~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~ 98 (277)
T PRK06928 55 -A-DNEAEIFT-KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIA 98 (277)
T ss_pred -e-CCHHHHHh-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence 1 12234454 49999999987776666655532 2455666643
No 241
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.74 E-value=1.1 Score=44.98 Aligned_cols=111 Identities=17% Similarity=0.119 Sum_probs=66.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+|.+||+|-.|+.++.+|++.|. +++++|.+. +. ..+. +.|...+....+-.. ..++-+.+....
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~~--- 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPDT--- 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCCh---
Confidence 59999999999999999999996 677887653 11 1111 223333322222221 223333333211
Q ss_pred cchHHHh-------c--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 166 SSEEEIL-------S--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 166 ~~~~~ll-------~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
....+.+ . .+-.+||||+. ++.+...+.+.+.++++.++++--.|+
T Consensus 67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg 122 (292)
T PRK15059 67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGG 122 (292)
T ss_pred HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 1111211 1 11358888875 566778899999999999999765553
No 242
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.70 E-value=1.1 Score=43.63 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=30.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+++++.|+..|. ++.+++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~ 40 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN 40 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 367889999997 8999999999999997 57776643
No 243
>PLN02477 glutamate dehydrogenase
Probab=91.70 E-value=1.1 Score=47.32 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=32.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|.|+|.||+.+|+.|...|..-+.+.|.+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4788999999999999999999999998766687754
No 244
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.69 E-value=1.2 Score=47.36 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=32.5
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4789999999999999999999999998877775544
No 245
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.68 E-value=0.74 Score=40.89 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.2
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.|+|.| .+|+|..+++.|++.|-.++.+++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3578886 78999999999999998899886655
No 246
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.63 E-value=2.4 Score=45.02 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=30.7
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++++|+|.|+ |.+|+++++.|+..|. +++++|..
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 3556678999985 9999999999999995 58888843
No 247
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.58 E-value=2.1 Score=47.82 Aligned_cols=105 Identities=18% Similarity=0.301 Sum_probs=60.7
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEE
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~ 158 (448)
..-++++|+|.|+ |-+|+++++.|...|=-+++.+|...- +..+ +.. ++ +++.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~---~~~~--------------------~~~-~~--~~~~ 364 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD---AISR--------------------FLG-HP--RFHF 364 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch---hhhh--------------------hcC-CC--ceEE
Confidence 3456778999985 999999999999864235777665321 1000 000 11 2232
Q ss_pred EeccCCc-cc-hHHHhcCCCCEEEEccC-----------------ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 159 KVLLYDA-SS-EEEILSGHPDFVLDCID-----------------NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 159 ~~~~~~~-~~-~~~ll~~~~D~Vida~D-----------------n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
+...+.. .. ....+.+ +|+||.+.. |...-..+.++|++++.++|..++...
T Consensus 365 ~~gDl~d~~~~l~~~l~~-~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~v 435 (660)
T PRK08125 365 VEGDISIHSEWIEYHIKK-CDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEV 435 (660)
T ss_pred EeccccCcHHHHHHHhcC-CCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhh
Confidence 3333332 11 2334444 788886542 222334577889999988888766543
No 248
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.56 E-value=0.39 Score=40.65 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=57.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhC--CceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+|.|||+|..|..-+..+.+.+ +.-..++|.+ ..+++.+++. +. +. .+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~~----~~-~~--~~~--- 52 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAEK----YG-IP--VYT--- 52 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHHH----TT-SE--EES---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHHH----hc-cc--chh---
Confidence 6999999999999999999883 3222344444 2233333222 11 11 221
Q ss_pred CccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+.++++. .++|+|+.|+.+ .....+...|.++|++++.--
T Consensus 53 ---~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 53 ---DLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp ---SHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEES
T ss_pred ---HHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEEc
Confidence 2455654 349999999888 557788888888999888743
No 249
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=91.56 E-value=0.68 Score=45.87 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=26.4
Q ss_pred EEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+|.| +|-+|+++++.|+..|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 67786 59999999999999998778887754
No 250
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.56 E-value=0.51 Score=48.14 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=63.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|+|.|+-|+.+|..|++.| ..++++..|.-....++..-- -.+.-|.+.+ .....-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~-----------------N~~yLp~i~l--p~~l~a 61 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRE-----------------NPKYLPGILL--PPNLKA 61 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCc-----------------CccccCCccC--Cccccc
Confidence 58999999999999999999999 667776655333322222100 0011122211 111111
Q ss_pred ccchHHHhcCCCCEEEEccCChHHHHHHHHH--HHHcCCcEEEEc
Q 013156 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAA--CVRRGLKVLCAT 207 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~--c~~~~ip~I~~~ 207 (448)
..+..+.+.+ +|+||-++.+...+..+.++ ....+.+++++.
T Consensus 62 t~Dl~~a~~~-ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 62 TTDLAEALDG-ADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred ccCHHHHHhc-CCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence 2345566665 99999999998888776664 335666677754
No 251
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.50 E-value=1 Score=49.28 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=30.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.+|+|+|+|.+|..+++.|...|. .+.+||.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 5799999999999999999999996 489999884
No 252
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.50 E-value=1.1 Score=48.48 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=56.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHH--hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh--CCCceEEE
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLR--SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDA 158 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~Lar--sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i--nP~v~v~~ 158 (448)
..++|+|||.|..|.++|..|++ .|+ +++|+|... .+-.+.|..... |--..|. +.+.+.++ ++.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p-~pgGlvr~gvaP--~~~~~k~--v~~~~~~~~~~~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP-TPFGLVRSGVAP--DHPETKN--VTNQFSRVATDDRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC-CCcceEeeccCC--CcchhHH--HHHHHHHHHHHCCeEEEc
Confidence 35689999999999999999997 564 699999776 355566653321 1112222 22222221 13344322
Q ss_pred EeccCCc-cchHHHhcCCCCEEEEccCCh
Q 013156 159 KVLLYDA-SSEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 159 ~~~~~~~-~~~~~ll~~~~D~Vida~Dn~ 186 (448)
+..+.. -..+++.. .||.||-|+...
T Consensus 99 -nv~vg~dvtl~~L~~-~yDaVIlAtGa~ 125 (491)
T PLN02852 99 -NVTLGRDVSLSELRD-LYHVVVLAYGAE 125 (491)
T ss_pred -CEEECccccHHHHhh-hCCEEEEecCCC
Confidence 111222 23445554 499999988753
No 253
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.50 E-value=0.42 Score=42.20 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=50.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
..-+|.|||+|-||..++..|.++|.. |.-+ +. +....++++.+.-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~----- 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAIL----- 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCccccccccccccccccc-----
Confidence 456799999999999999999999964 3321 11 1122334444444443332
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH----cCCcEEEEcCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR----RGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~----~~ip~I~~~g~ 209 (448)
+..+.+. ..|+||-|+-+-.......+++.. .+.-+++++|+
T Consensus 61 ----~~~~~~~-~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa 106 (127)
T PF10727_consen 61 ----DLEEILR-DADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA 106 (127)
T ss_dssp -----TTGGGC-C-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred ----ccccccc-cCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence 1234444 499999998765555555555543 56668887765
No 254
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.49 E-value=1.3 Score=43.37 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=51.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+|.|||+|-+|+.++..|.+.|.. .+.+.| | ...|++.+.++ .+.+++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r---------~~~~~~~l~~~----~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------R---------NAQIAARLAER----FPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------C---------CHHHHHHHHHH----cCCceEe------
Confidence 699999999999999999998842 223322 1 11233333322 2222221
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+..+.+.. .|+||-|+-+......+.......+.-+|+..
T Consensus 53 --~~~~~~~~~-aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 53 --KDNQAVVDR-SDVVFLAVRPQIAEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred --CCHHHHHHh-CCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence 123344544 89999999965554444443223455566643
No 255
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.49 E-value=0.9 Score=46.01 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=28.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|+|+|..|+.++..|++.|. +++++|.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 479999999999999999999995 488877753
No 256
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.48 E-value=1 Score=43.10 Aligned_cols=36 Identities=22% Similarity=0.541 Sum_probs=29.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999986 7999999999999997 57775543
No 257
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=91.47 E-value=1.6 Score=41.94 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=27.1
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.|+|.|. |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 457888877 6999999999999996 57887754
No 258
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.44 E-value=2.6 Score=44.92 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=34.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4788999999999999999999999998888788877
No 259
>PRK09186 flagellin modification protein A; Provisional
Probab=91.44 E-value=1.1 Score=42.85 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.4
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
+++++|+|.|+ ||+|.++++.|++.|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 46788999987 79999999999999964 66654
No 260
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.43 E-value=0.25 Score=49.84 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..+|+|+|+|++|+..+-+|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999995 68888875
No 261
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.43 E-value=0.88 Score=45.27 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|||+|.+|+.++.+|++.|. ++.++|.+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 479999999999999999999996 477777653
No 262
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.42 E-value=1.2 Score=42.35 Aligned_cols=34 Identities=29% Similarity=0.636 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|++++++|.|+ |++|+.+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 56889999987 8999999999999995 5777654
No 263
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.33 E-value=0.42 Score=51.74 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
-++|.|||+|..|+.+|.+|+++|.. ++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 45799999999999999999999964 88888664
No 264
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.30 E-value=1.3 Score=42.63 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=29.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++++|+|.|+ |++|+.+++.|+..|. ++.++|.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 467899999985 9999999999999997 5777654
No 265
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=91.28 E-value=0.33 Score=50.30 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-CCceEEEEeCCcccccccccc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq 127 (448)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-.....|+
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 45799999999999999999985 877899999987654433333
No 266
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.25 E-value=0.65 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHh
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRS 106 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars 106 (448)
.||.|||||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 3799999999999999999876
No 267
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.23 E-value=1.2 Score=42.31 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=28.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
.+++++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 356789999986 89999999999999974 55544
No 268
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.16 E-value=2.7 Score=41.73 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=27.4
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.| +|.+|+++++.|...|. ++++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899998 59999999999999996 46665554
No 269
>PRK12320 hypothetical protein; Provisional
Probab=91.15 E-value=1.6 Score=49.13 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=56.3
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
+|+|.| +|-+|++++..|...|. +++.+|...-.. .++.++ .+...++
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~~~~~----------------------------~~~~ve--~v~~Dl~ 50 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQHPHDA----------------------------LDPRVD--YVCASLR 50 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCChhhc----------------------------ccCCce--EEEccCC
Confidence 699998 69999999999999995 677777421000 012222 2222222
Q ss_pred ccchHHHhcCCCCEEEEccC---------ChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 165 ASSEEEILSGHPDFVLDCID---------NIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~D---------n~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
.....+.+.+ +|+||.+.. |...-..+.+.|++.++.+|..++.
T Consensus 51 d~~l~~al~~-~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 51 NPVLQELAGE-ADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CHHHHHHhcC-CCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 2223334443 777777653 2222345778899999988887654
No 270
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.13 E-value=1.2 Score=44.31 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=29.0
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~ 73 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARR 73 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 56788999986 9999999999999996 57776543
No 271
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.10 E-value=0.97 Score=43.30 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.0
Q ss_pred HHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 79 q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...+++++|+|.|+ |++|+.+++.|+..|.. +.+++.+
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~ 44 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVS 44 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence 44578999999987 89999999999999985 8887743
No 272
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.09 E-value=0.32 Score=49.58 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=36.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL 124 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNL 124 (448)
...+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 899999888855433
No 273
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.09 E-value=0.83 Score=43.32 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+ |++|.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 67889999987 89999999999999976 8887655
No 274
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.04 E-value=0.29 Score=49.67 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCc-eEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
..||.|||+|.||+.+|..|+..|.. +|.|+|-+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35899999999999999999999974 69998753
No 275
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.02 E-value=1.3 Score=47.67 Aligned_cols=35 Identities=37% Similarity=0.558 Sum_probs=30.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|+|+|+.|..+|..|.+.|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 457889999999999999999999997 58888854
No 276
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.00 E-value=0.32 Score=49.19 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-ceEEEEeCC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
+|.|||+|.+|+.+|..|++.|+ .++.|+|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999964
No 277
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=90.98 E-value=0.45 Score=43.10 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=58.6
Q ss_pred cEEEEcCChHHHHHHHHHHH-hCCceEEEEeCCccccccccccccccCCccCChHHHHHHH-HhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK-HFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~-~l~~inP~v~v~~~~~~~ 163 (448)
+|.|+|+|.+|..++..+.. .++.-+.+.|. .++..+...+-| ++--|+.+.++-.+ .-..+| ...+....+.
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~-Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~- 76 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKY-DSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER- 76 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcc-cCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC-
Confidence 79999999999999998874 45554445452 444444433221 23345554321100 000111 1112221111
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEE
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~ 206 (448)
++.+.. .-.-..|+||||+.-+.++.....+...--+.+|-+
T Consensus 77 ~p~~~~-w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViis 118 (149)
T smart00846 77 DPANLP-WKELGVDIVVECTGKFTTREKASAHLKAGAKKVIIS 118 (149)
T ss_pred ChHHCc-ccccCCeEEEeccccccchHHHHHHHHcCCCEEEeC
Confidence 111111 111138999999999888877665555433444443
No 278
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.96 E-value=0.27 Score=49.89 Aligned_cols=33 Identities=48% Similarity=0.765 Sum_probs=30.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCc-eEEEEeCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D 117 (448)
.||.|||+|.||+.+|..|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999865
No 279
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.93 E-value=1.4 Score=45.18 Aligned_cols=34 Identities=38% Similarity=0.643 Sum_probs=29.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3678999999999999999888899988887764
No 280
>PRK14982 acyl-ACP reductase; Provisional
Probab=90.93 E-value=0.3 Score=50.22 Aligned_cols=37 Identities=38% Similarity=0.536 Sum_probs=32.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHH-hCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D 117 (448)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++.+++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 588999999999 8999999999985 589999997654
No 281
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.91 E-value=1.3 Score=42.23 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=29.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ |++|+.+++.|++.|. ++.+++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~ 42 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRR 42 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 66789999986 9999999999999997 47765443
No 282
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=90.90 E-value=1.5 Score=44.35 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=32.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCccccccc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL 124 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL 124 (448)
+|.|||+||-|+.++..|.+.|+. .+..+|.|.-.++.+
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~ 42 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS 42 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence 689999999999999999999986 456678887555544
No 283
>PRK09414 glutamate dehydrogenase; Provisional
Probab=90.90 E-value=0.56 Score=49.97 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=31.6
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.|++++|+|.|.|.||+++|+.|...|..=+.+.|.
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 478999999999999999999999999776666573
No 284
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.89 E-value=1.6 Score=48.56 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=31.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+++|+|||.|..|-.+|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 58999999999999999999999998 599988654
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.89 E-value=1.2 Score=45.42 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=65.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
..++|+|.|+|.+|-.....+-..|..++.++|-.. +|.+.+++ +- .++......
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~-------------------~Rle~Ak~-~G-----a~~~~~~~~ 223 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA-------------------NRLELAKK-FG-----ATVTDPSSH 223 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH-------------------HHHHHHHH-hC-----CeEEeeccc
Confidence 478999999999999999888899999999987653 33333333 21 111111110
Q ss_pred C-CccchHH----Hhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 163 Y-DASSEEE----ILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 163 ~-~~~~~~~----ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
. ..+...+ .+. ..+|++|||+.--.+-..-...++..|.-++-.+|
T Consensus 224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred cccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccC
Confidence 0 1111111 222 35999999999888877778888888884444443
No 286
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.88 E-value=1.7 Score=41.55 Aligned_cols=36 Identities=31% Similarity=0.581 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+.+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 356788999988 9999999999999997 47776553
No 287
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=90.87 E-value=1.1 Score=46.11 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=58.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-------ceEEEEeCCccccccccccccccCCcc-CChHHHHHHHHhh--hhCCCce
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV-------GRLLLVDFDQVSVSSLNRHAVATRADV-GTPKALCLKKHFS--SIFPECH 155 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV-------g~i~LiD~D~V~~sNLnRq~l~~~~di-G~~Kv~~~~~~l~--~inP~v~ 155 (448)
+|.|+|+|..|+.+|..|+..|. .+++|+..+. ++ +..=++.+.+.-. ..-|.++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~n~~ylpgi~ 65 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGRNLTEIINTTHENVKYLPGIK 65 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCHHHHHHHHhcCCCccccCCCc
Confidence 58999999999999999999882 4677765421 11 1111111111100 0012211
Q ss_pred EEEEeccCC-ccchHHHhcCCCCEEEEccCChHHHHHHHHHHH--HcCCcEEEEc
Q 013156 156 IDAKVLLYD-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT 207 (448)
Q Consensus 156 v~~~~~~~~-~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~--~~~ip~I~~~ 207 (448)
+ +..+. ..+..+.+.+ .|+||-|+-+...+..+.++.. +.+.++|+..
T Consensus 66 L---p~~i~at~dl~eal~~-ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 66 L---PANLVAVPDLVEAAKG-ADILVFVIPHQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred C---CCCeEEECCHHHHHhc-CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 1 11111 1234556665 8999999999888776665542 3466777753
No 288
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.86 E-value=1.6 Score=47.81 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=31.6
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
-.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 357899999999999999999999998 599998543
No 289
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.86 E-value=2 Score=45.03 Aligned_cols=41 Identities=44% Similarity=0.523 Sum_probs=34.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq 127 (448)
+|.|||+|-+|..+|..|+..|. +++++|.|.-....|+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 69999999999999999999997 589999877655566654
No 290
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.81 E-value=0.34 Score=48.62 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.||.|||+|.+|+.+|..|+..|.+++.|+|-+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 589999999999999999999986699999873
No 291
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=90.70 E-value=1.2 Score=43.40 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.2
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899985 9999999999999985 5777654
No 292
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=90.68 E-value=3.1 Score=39.60 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCcEEEEcCChHHHHHHHHHH--HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 84 GSYVVVIGLGGVGSHAAAMLL--RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~La--rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
..+|+|||+|.+|..++..+. ..|+.-+.++|.|. +...+. ++ ...+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~---~~~~~~-------i~----------------g~~v----- 132 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP---EKIGTK-------IG----------------GIPV----- 132 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh---hhcCCE-------eC----------------CeEE-----
Confidence 468999999999999998743 45666667777752 111111 00 0111
Q ss_pred cCCccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
...++..+++. .++|.|+.|+.+... ..+.+.|.+.|+..|...
T Consensus 133 -~~~~~l~~li~~~~iD~ViIa~P~~~~-~~i~~~l~~~Gi~~il~~ 177 (213)
T PRK05472 133 -YHIDELEEVVKENDIEIGILTVPAEAA-QEVADRLVEAGIKGILNF 177 (213)
T ss_pred -cCHHHHHHHHHHCCCCEEEEeCCchhH-HHHHHHHHHcCCCEEeec
Confidence 01123344443 248999999877554 466788889998777754
No 293
>PLN02602 lactate dehydrogenase
Probab=90.65 E-value=0.34 Score=50.06 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC-ceEEEEeC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
.||.|||+|.||+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999998 57999876
No 294
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.65 E-value=1.5 Score=44.82 Aligned_cols=102 Identities=18% Similarity=0.160 Sum_probs=57.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|+|+|..|+.++..|++.| ++.++..+.-....++..-. .....+. . ..+.+. +.. +
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~--------~-~~l~~~--i~~-----t 68 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGN--------D-VVLSDT--LRA-----T 68 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCC--------C-cccCCC--eEE-----E
Confidence 57999999999999999999998 46665544322222222110 0011110 0 001111 111 1
Q ss_pred ccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH--cCCcEEEEc
Q 013156 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT 207 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~--~~ip~I~~~ 207 (448)
. +..+.+.+ .|+||-|+-+...+..+.++... .+.++|+..
T Consensus 69 ~-d~~~a~~~-aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~ 111 (341)
T PRK12439 69 T-DFAEAANC-ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV 111 (341)
T ss_pred C-CHHHHHhc-CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 1 22334454 89999999988888777666543 344566643
No 295
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.64 E-value=0.4 Score=54.16 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=57.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccc---ccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+-+|..++++|. .++|+|.+.=.+..--.. .+-..-.-|+-..+...+.+.++.+ ..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~- 385 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP------TL- 385 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE------eC-
Confidence 579999999999999999999996 599999774332210000 0000011122222222233322221 11
Q ss_pred cCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHHc
Q 013156 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR 199 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~~ 199 (448)
+.+. +. ++|+||.|+ .+.+.|..+..-..+.
T Consensus 386 -----~~~~-~~-~aDlViEav~E~l~~K~~vf~~l~~~ 417 (715)
T PRK11730 386 -----DYAG-FE-RVDVVVEAVVENPKVKAAVLAEVEQK 417 (715)
T ss_pred -----CHHH-hc-CCCEEEecccCcHHHHHHHHHHHHhh
Confidence 1222 34 499999997 5788888776555543
No 296
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=90.62 E-value=1.3 Score=46.77 Aligned_cols=96 Identities=22% Similarity=0.274 Sum_probs=64.0
Q ss_pred cEEEEcCChHHH-HHHHHHHH----hCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 86 YVVVIGLGGVGS-HAAAMLLR----SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs-~va~~Lar----sGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
||.|||+|++-+ .+...|+. .++++|.|+|-|. ...|+.- ...+++.+.+.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEeC
Confidence 799999999866 45556665 4679999999885 4334331 134556666777777777643
Q ss_pred ccCCccchHHHhcCCCCEEEEccC--ChHHHHHHHHHHHHcCCc
Q 013156 161 LLYDASSEEEILSGHPDFVLDCID--NIDTKVALLAACVRRGLK 202 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~D--n~~~r~~l~~~c~~~~ip 202 (448)
+..+.+.+ .|+||.++- ..+.+..-.++..++|+-
T Consensus 68 ------d~~~al~g-adfVi~~~~vg~~~~r~~de~i~~~~Gi~ 104 (419)
T cd05296 68 ------DRREALEG-ADFVFTQIRVGGLEARALDERIPLKHGVI 104 (419)
T ss_pred ------CHHHHhCC-CCEEEEEEeeCCcchhhhhhhhHHHcCCc
Confidence 24556666 899998875 334555555667777663
No 297
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.59 E-value=1.7 Score=46.55 Aligned_cols=34 Identities=38% Similarity=0.604 Sum_probs=30.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|||.|..|-.+|..|++.|.. ++++|.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 568999999999999999999999985 8888765
No 298
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.57 E-value=1.8 Score=41.71 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67889999998 7999999999999998 78887654
No 299
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.57 E-value=1.3 Score=46.11 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=28.7
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|.||| +|.+|+.++..|.+.|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6799998 99999999999999994 58888864
No 300
>PRK09291 short chain dehydrogenase; Provisional
Probab=90.53 E-value=4.8 Score=38.31 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
+++|+|.|+ ||+|..+++.|+..|.. +.+.+.+. .+.+.+.+......+.+ ......
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~-------------------~~~~~~~~~~~~~~~~~--~~~~~D 59 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIA-------------------PQVTALRAEAARRGLAL--RVEKLD 59 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCH-------------------HHHHHHHHHHHhcCCcc--eEEEee
Confidence 457899987 89999999999999964 44443321 12233334444444433 333333
Q ss_pred CC-ccchHHHhcCCCCEEEEccC
Q 013156 163 YD-ASSEEEILSGHPDFVLDCID 184 (448)
Q Consensus 163 ~~-~~~~~~ll~~~~D~Vida~D 184 (448)
++ .+.....+..++|+||.|..
T Consensus 60 ~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 60 LTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred CCCHHHHHHHhcCCCCEEEECCC
Confidence 33 23333444435899998754
No 301
>PRK11579 putative oxidoreductase; Provisional
Probab=90.47 E-value=6 Score=40.32 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=75.7
Q ss_pred CcEEEEcCChHHHH-HHHHHHHh-CCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 85 SYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
-+|.|||+|.+|.. .+..+... ++.-..+.|.|. .|+ + +..+.+++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~-------------------~~~---~----~~~~~~~~------ 52 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA-------------------TKV---K----ADWPTVTV------ 52 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH-------------------HHH---H----hhCCCCce------
Confidence 48999999999974 56666554 444444555441 111 1 11222211
Q ss_pred CCccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCc----------cCCCceeecccccccCCch
Q 013156 163 YDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR----------ADPTRIRVADLRESTNDPL 231 (448)
Q Consensus 163 ~~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~----------~dp~~i~i~di~~~~~dpl 231 (448)
..+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+.. .....+.+.-....-++|.
T Consensus 53 --~~~~~ell~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~ 129 (346)
T PRK11579 53 --VSEPQHLFNDPNIDLIVIPTPN-DTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSD 129 (346)
T ss_pred --eCCHHHHhcCCCCCEEEEcCCc-HHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHH
Confidence 124566664 358999999988 45777778888899998874322210 0112333333444557888
Q ss_pred hHHHHHHhhhhcCccCCc
Q 013156 232 SRAVRHRLRKDYGIEGGI 249 (448)
Q Consensus 232 ~~~~r~~l~~~~g~~g~i 249 (448)
.+.+|+.++. |..|.+
T Consensus 130 ~~~~k~~i~~--g~iG~i 145 (346)
T PRK11579 130 FLTLKALLAE--GVLGEV 145 (346)
T ss_pred HHHHHHHHhc--CCCCCe
Confidence 8888888764 555544
No 302
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.33 E-value=2.8 Score=44.55 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=28.0
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..+|+|.|. |-+|+++++.|...|. +++.+|.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3468999985 8999999999999986 57777754
No 303
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.31 E-value=4.9 Score=40.04 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=26.4
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.|+ |++|++++..|+..|.. +.+++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcC
Confidence 568999985 99999999999999964 6555444
No 304
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.21 E-value=1.1 Score=46.03 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=57.1
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEE-EEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
+|.|+|+ |.+|.++++.|..--.-++. +++.+. ..|+. +.+.+|+++... ...+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 7999999 99999999999965333344 444431 12221 111223221100 0112
Q ss_pred CccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 164 ~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
...+..++.. ++|+||.|+.+-..+....+ +.+.|+.+|+-++.
T Consensus 58 ~~~~~~~~~~-~~DvVf~alP~~~s~~~~~~-~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 58 EPIDEEEIAE-DADVVFLALPHGVSAELAPE-LLAAGVKVIDLSAD 101 (346)
T ss_pred ecCCHHHhhc-CCCEEEECCCchHHHHHHHH-HHhCCCEEEeCChh
Confidence 2212234444 49999999998766655554 45688999997654
No 305
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=90.14 E-value=1.6 Score=44.87 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=53.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCceEEE-EeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLL-VDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~L-iD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+|+|+|+ |.+|.+++..|....--++.. .|.. ..|+ .+.+..|++... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence 58999998 889999999999764334433 3311 1111 011111211100 0001
Q ss_pred CCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 163 ~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
++.... .... ++|+|+.|+.+... ..+...|.+.|+++|+-++.
T Consensus 58 ~~~~~~-~~~~-~vD~Vf~alP~~~~-~~~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 58 LEPLDP-EILA-GADVVFLALPHGVS-MDLAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred eecCCH-HHhc-CCCEEEECCCcHHH-HHHHHHHHhCCCEEEECCcc
Confidence 111111 1233 49999999988544 45555566789999997654
No 306
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.09 E-value=0.33 Score=54.75 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=57.0
Q ss_pred CcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCccccccccccc------cccCCccCChHHHHHHHHhhhhCCCceEE
Q 013156 85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHA------VATRADVGTPKALCLKKHFSSIFPECHID 157 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~------l~~~~diG~~Kv~~~~~~l~~inP~v~v~ 157 (448)
++|.|||+|-.|+.+|..++ ++|+ .++++|.+. +.+.+.. +-....-|+-..+...+.+.. |.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------i~ 379 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMAL------IS 379 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc------EE
Confidence 67999999999999999999 8896 489999764 2222210 000001121111111122221 22
Q ss_pred EEeccCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHHcCC
Q 013156 158 AKVLLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRRGL 201 (448)
Q Consensus 158 ~~~~~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~~~i 201 (448)
... +. +-+.+ +|+||.|+ .+.+.|..+.+...+.-.
T Consensus 380 ~~~------~~-~~~~~-aDlViEav~E~~~~K~~v~~~le~~~~ 416 (708)
T PRK11154 380 GTT------DY-RGFKH-ADVVIEAVFEDLALKQQMVAEVEQNCA 416 (708)
T ss_pred EeC------Ch-HHhcc-CCEEeecccccHHHHHHHHHHHHhhCC
Confidence 111 12 22344 99999997 578888877766655433
No 307
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.09 E-value=0.66 Score=49.90 Aligned_cols=33 Identities=36% Similarity=0.426 Sum_probs=29.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++|+|+|+|..|-.++..|...|. ++++.|.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~ 43 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD 43 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence 57899999999999999999999996 6777774
No 308
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=90.09 E-value=0.48 Score=47.06 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=31.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV 121 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~ 121 (448)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 799999996643
No 309
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.06 E-value=0.56 Score=50.79 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|.+|+++|.. ++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCH
Confidence 5799999999999999999999974 88888664
No 310
>PLN02827 Alcohol dehydrogenase-like
Probab=90.01 E-value=1.9 Score=44.44 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=29.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~ 226 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI 226 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4789999999999999999888899887877664
No 311
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.99 E-value=2.1 Score=44.12 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.3
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4588999987 9999999999999985 5777774
No 312
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.99 E-value=0.42 Score=48.70 Aligned_cols=35 Identities=43% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998764
No 313
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.97 E-value=2.1 Score=42.33 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=54.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
..+|.+||+|..|+.++..|...|+ .++.++| |+. ..|.+.+++. . .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~~----~-g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQK----Y-GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHHh----c-CceEe---
Confidence 3579999999999999999999983 2333322 210 1122222221 1 12221
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH--cCCcEEEE
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCA 206 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~--~~ip~I~~ 206 (448)
.+..+... +.|+||-|+-+......+..+... .+..+|+.
T Consensus 57 -----~~~~e~~~-~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 -----HNKKELLT-DANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred -----CCHHHHHh-cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 12234444 489999999988877777665432 34556664
No 314
>PLN02780 ketoreductase/ oxidoreductase
Probab=89.95 E-value=1.6 Score=44.20 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
++.++|.|+ ||+|.++|+.|++.|. ++.+++.+. .|.+.+++.+++.++..++..+...
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 567899987 7999999999999997 588876432 2444555566655555555544433
Q ss_pred C
Q 013156 163 Y 163 (448)
Q Consensus 163 ~ 163 (448)
+
T Consensus 113 l 113 (320)
T PLN02780 113 F 113 (320)
T ss_pred C
Confidence 3
No 315
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=89.92 E-value=1.3 Score=44.99 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=27.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEE
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~L 113 (448)
|++++|.|||+|..|..++.+|..+|+. +.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999973 444
No 316
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=89.90 E-value=1.9 Score=42.55 Aligned_cols=30 Identities=33% Similarity=0.554 Sum_probs=24.9
Q ss_pred EEEEc-CChHHHHHHHHHHHhCCceEEEEeC
Q 013156 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|+|.| +|.+|++++..|...|...+.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 56776 6999999999999999766777764
No 317
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.90 E-value=3.5 Score=40.32 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=24.9
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEeC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
+|+|.|. |.+|+++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5889986 9999999999999873 45776653
No 318
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.88 E-value=2.1 Score=35.52 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhhhCCCceEEEE--eccCCccc--hHHHhcCCCCEEEEccCC--hHHHHHHHHHHHHcCCcEEEEcCCC
Q 013156 138 PKALCLKKHFSSIFPECHIDAK--VLLYDASS--EEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAG 210 (448)
Q Consensus 138 ~Kv~~~~~~l~~inP~v~v~~~--~~~~~~~~--~~~ll~~~~D~Vida~Dn--~~~r~~l~~~c~~~~ip~I~~~g~g 210 (448)
......++.+.+.+ .+...+ ........ +...+.. .|+||..+|. ......+-+.|.++++|++.+-+.|
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~-aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKK-ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCC-CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 45566677777755 444444 33333333 5555654 8999999994 5667788899999999999987554
No 319
>PRK06128 oxidoreductase; Provisional
Probab=89.85 E-value=2.2 Score=42.37 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 79 q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
+.+|++++|+|.|+ ||+|..+++.|++.|.. +.+.+
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 44688899999986 89999999999999974 55543
No 320
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.77 E-value=1.3 Score=44.98 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.|+ ||+|.++++.|++.|.. +.+++.+
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~ 40 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAARD 40 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence 467889999998 89999999999999974 7776543
No 321
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=89.73 E-value=1.6 Score=42.91 Aligned_cols=32 Identities=38% Similarity=0.520 Sum_probs=28.1
Q ss_pred EEEEcC-ChHHHHHHHHHHHhC--C-ceEEEEeCCc
Q 013156 87 VVVIGL-GGVGSHAAAMLLRSG--V-GRLLLVDFDQ 118 (448)
Q Consensus 87 VlVVG~-GGvGs~va~~LarsG--V-g~i~LiD~D~ 118 (448)
|.|||+ |.+|+.++..|+..| . .+|.|+|-+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999998 4 6899998664
No 322
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.70 E-value=1.8 Score=45.52 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=30.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+.++|+|+|.|+.|..+|..|.+.|. +++.+|.+.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~ 36 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL 36 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 35689999999999999999999997 588888653
No 323
>PLN02253 xanthoxin dehydrogenase
Probab=89.68 E-value=2 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=28.8
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 466788999975 7999999999999996 5777664
No 324
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.65 E-value=0.59 Score=52.79 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=59.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccc---ccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+-+|..++.+|+ .++|+|.+.=.+...-.+ .+-..-+-|+...+...+.+.++.+. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~------~- 385 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT------L- 385 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe------C-
Confidence 369999999999999999999997 599999875433221100 01111112322222233333332221 1
Q ss_pred cCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHHcCC
Q 013156 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRRGL 201 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~~~i 201 (448)
+. +-+. ++|+||.|+ .+.+.|..+.+-....-.
T Consensus 386 -----~~-~~~~-~aDlViEav~E~l~~K~~vf~~l~~~~~ 419 (714)
T TIGR02437 386 -----SY-AGFD-NVDIVVEAVVENPKVKAAVLAEVEQHVR 419 (714)
T ss_pred -----CH-HHhc-CCCEEEEcCcccHHHHHHHHHHHHhhCC
Confidence 11 2234 499999997 578888877665555433
No 325
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.64 E-value=2.2 Score=43.87 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 169 EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 169 ~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
.+++.+ +|+||+|+.....+ .....|.++|+++|+.++.
T Consensus 73 ~el~~~-vDVVIdaT~~~~~~-e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEK-ADIVVDATPGGVGA-KNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hHhhcc-CCEEEECCCchhhH-HHHHHHHHCCCEEEEcCCC
Confidence 445554 99999999876554 4556778889999998874
No 326
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.62 E-value=2.2 Score=41.81 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=26.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.++|.|+||+|.++++.|+ .| .++.++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCC
Confidence 467888999999999999996 78 467776654
No 327
>PLN02688 pyrroline-5-carboxylate reductase
Probab=89.57 E-value=3.5 Score=40.20 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=21.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGV 108 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGV 108 (448)
+|.+||+|.+|+.++..|.++|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999985
No 328
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=89.55 E-value=2.1 Score=42.07 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=66.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC-
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY- 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~- 163 (448)
++|+|+|--+=|-.++..|...|. +.+ ... .+.|. +.+....+.+ ..+...+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~--------------sv~--t~~g~-------~~~~~~~~~~--~v~~G~lg 53 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV--------------SVA--TSYGG-------ELLKPELPGL--EVRVGRLG 53 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE--------------EEE--hhhhH-------hhhccccCCc--eEEECCCC
Confidence 479999999999999999999997 332 011 12221 1111222333 3455667
Q ss_pred CccchHHHhc-CCCCEEEEccCChHHHH--HHHHHHHHcCCcEEEEc
Q 013156 164 DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~Vida~Dn~~~r~--~l~~~c~~~~ip~I~~~ 207 (448)
+.+...+++. .++++|||++..++... .+.+.|.+.|+|++--.
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 7777777764 36999999999998765 67799999999999743
No 329
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.54 E-value=2.7 Score=41.55 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ |.+|+++++.|++.|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6899985 9999999999999995 68887764
No 330
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.52 E-value=2.3 Score=40.61 Aligned_cols=36 Identities=22% Similarity=0.489 Sum_probs=30.0
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.| .||+|.++++.|++.|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36778899997 57999999999999996 68887654
No 331
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.50 E-value=2.5 Score=44.88 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-...+|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 356799999999999999999999997 59999975
No 332
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.48 E-value=4.1 Score=39.23 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.0
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEE
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L 113 (448)
+..+.++|+|+|+ |++|+.+++.|+..|.. ++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 4456789999996 99999999999998854 544
No 333
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=89.45 E-value=2.4 Score=41.65 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=53.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
.+.+|.|||+|-+|+.++..|.++|+ .++.+.|.+.-. .+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~- 47 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY- 47 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE-
Confidence 34689999999999999999999984 236665543200 00 011
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHH-cCCcEEEEc
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT 207 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~-~~ip~I~~~ 207 (448)
.. +..+.+. ++|+||-|+.....+..+.++... ....+|+..
T Consensus 48 ----~~-~~~~~~~-~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~ 90 (260)
T PTZ00431 48 ----LQ-SNEELAK-TCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISIC 90 (260)
T ss_pred ----eC-ChHHHHH-hCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEe
Confidence 11 1223344 489999999888887777765532 234455533
No 334
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.40 E-value=2 Score=41.05 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=26.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~ 33 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRR 33 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 6889985 8999999999999996 57777654
No 335
>PLN00016 RNA-binding protein; Provisional
Probab=89.39 E-value=2.4 Score=43.71 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=65.7
Q ss_pred HHHHhhCCcEEEE----cC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCC
Q 013156 78 SQQKVSGSYVVVI----GL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP 152 (448)
Q Consensus 78 ~q~~L~~~~VlVV----G~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP 152 (448)
.-.....++|+|+ |+ |-+|+++++.|+..|. ++++++.+.-....+.-. ..... ..+. .+
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~-----------~~~~~-~~l~--~~ 110 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKE-----------PFSRF-SELS--SA 110 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccC-----------chhhh-hHhh--hc
Confidence 3345566789999 75 8899999999999995 677777553211101000 00000 0111 11
Q ss_pred CceEEEEeccCCccchHHHhc-CCCCEEEEccC-ChHHHHHHHHHHHHcCC-cEEEEcCCCCcc
Q 013156 153 ECHIDAKVLLYDASSEEEILS-GHPDFVLDCID-NIDTKVALLAACVRRGL-KVLCATGAGARA 213 (448)
Q Consensus 153 ~v~v~~~~~~~~~~~~~~ll~-~~~D~Vida~D-n~~~r~~l~~~c~~~~i-p~I~~~g~g~~~ 213 (448)
.+++ +...++ +....+. ..+|+||++.. +...-..+.++|.+.++ .+|..++.+...
T Consensus 111 ~v~~--v~~D~~--d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 111 GVKT--VWGDPA--DVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred CceE--EEecHH--HHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 2222 222221 1333332 24999999864 34445567889998887 577766655443
No 336
>PLN02503 fatty acyl-CoA reductase 2
Probab=89.38 E-value=4.3 Score=45.06 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=77.0
Q ss_pred CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHhC--CceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhC
Q 013156 75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF 151 (448)
Q Consensus 75 G~e~q~~L~~~~VlVVG~-GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~in 151 (448)
|..-++-+++++|+|-|+ |-+|+.+++.|++.+ |++|.++....=..+-..|.. ..+ +-..+-+++++.+
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~ 182 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETH 182 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhc
Confidence 334567789999999988 889999999999874 788888543221111111110 000 0001123444555
Q ss_pred CC-------ceEEEEeccCCcc-------chHHHhcCCCCEEEEccCChH--------------HHHHHHHHHHHcC--C
Q 013156 152 PE-------CHIDAKVLLYDAS-------SEEEILSGHPDFVLDCIDNID--------------TKVALLAACVRRG--L 201 (448)
Q Consensus 152 P~-------v~v~~~~~~~~~~-------~~~~ll~~~~D~Vida~Dn~~--------------~r~~l~~~c~~~~--i 201 (448)
|. -++.++...++.. ....+.. ++|+||.|..+.. .-..+.++|.+.+ .
T Consensus 183 g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~-~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk 261 (605)
T PLN02503 183 GKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAK-EVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLK 261 (605)
T ss_pred CccccccccccEEEEEeeCCCcccCCCHHHHHHHHh-cCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 42 3677776666543 2233344 4999998876422 1235678887753 4
Q ss_pred cEEEEcCCCCccCC
Q 013156 202 KVLCATGAGARADP 215 (448)
Q Consensus 202 p~I~~~g~g~~~dp 215 (448)
.+++.+++...++.
T Consensus 262 ~fV~vSTayVyG~~ 275 (605)
T PLN02503 262 LFLQVSTAYVNGQR 275 (605)
T ss_pred eEEEccCceeecCC
Confidence 57776665444444
No 337
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.37 E-value=0.5 Score=49.06 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=30.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999886
No 338
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.37 E-value=2.4 Score=39.95 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+..|+|.|+ |++|+.+++.|+..|.. +.+++.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCC
Confidence 45678999986 89999999999999974 7775543
No 339
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.36 E-value=0.67 Score=44.99 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=34.1
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 78 ~q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.|.++++++++|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 588999999999987 7999999999999996 577777553
No 340
>PRK09135 pteridine reductase; Provisional
Probab=89.31 E-value=2.2 Score=40.30 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.6
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++++|+|.|+ |++|+.+++.|++.|.. +.++|.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence 4578999986 89999999999999974 555543
No 341
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=89.28 E-value=3.7 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++|+|.|+ |.+|+++++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999986 789999999999999776666664
No 342
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=89.22 E-value=4.2 Score=41.02 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=26.0
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++|+|.|+ |.+|+++++.|+..|. ++.++|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47889886 8899999999999996 57766643
No 343
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=89.21 E-value=1.6 Score=45.07 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=36.1
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceE--EEEeCCcccccc
Q 013156 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRL--LLVDFDQVSVSS 123 (448)
Q Consensus 77 e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i--~LiD~D~V~~sN 123 (448)
+.++-..+.+|.|||+||-|+.++..|.+.|+... ..+|.|.-.+..
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~ 58 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKT 58 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhc
Confidence 34445556789999999999999999999998644 557888744443
No 344
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.20 E-value=2.4 Score=40.94 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=29.7
Q ss_pred hhCCcEEEEcCC-hHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++.|+|.|.+ |+|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567889999875 799999999999997 78887654
No 345
>PTZ00188 adrenodoxin reductase; Provisional
Probab=89.17 E-value=2.6 Score=45.53 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=59.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhh--CCCceEEEE
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~i--nP~v~v~~~ 159 (448)
+.++|+|||.|..|.++|..|+ +.|+ +++|+|....-- =|.|...... . ++.+.+.+.+..+ ++.+++..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaPd-h---~~~k~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAPD-H---IHVKNTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCCC-C---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence 4678999999999999999776 5665 499988776543 3444443322 2 3444444444332 35555442
Q ss_pred eccCCcc-chHHHhcCCCCEEEEccCCh
Q 013156 160 VLLYDAS-SEEEILSGHPDFVLDCIDNI 186 (448)
Q Consensus 160 ~~~~~~~-~~~~ll~~~~D~Vida~Dn~ 186 (448)
+..+..+ ..+++.. .||.||-|+...
T Consensus 111 nv~VG~Dvt~eeL~~-~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRN-HYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHh-cCCEEEEEcCCC
Confidence 2223332 3556655 599999998764
No 346
>PLN00106 malate dehydrogenase
Probab=89.17 E-value=0.59 Score=47.74 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=31.8
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEeCCc
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~ 118 (448)
...||+|+|+ |.||+.++..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4579999999 9999999999998887 5799999865
No 347
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=89.13 E-value=1.7 Score=43.73 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=73.6
Q ss_pred hCCcEEEEcCChHHHH-HHHHHHHhCC--ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 83 SGSYVVVIGLGGVGSH-AAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~-va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
+..+|.|||||+.+.. .+..+...+- .-+-++|. ...|++.+++...-. .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~-------------------~~~~a~~~a~~~~~~------~-- 54 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR-------------------DPERAEAFAEEFGIA------K-- 54 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC-------------------CHHHHHHHHHHcCCC------c--
Confidence 3568999999988754 6667776662 33333333 334444444333211 1
Q ss_pred eccCCccchHHHhcC-CCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceeecccccccC
Q 013156 160 VLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTN 228 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~-~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~d----------p~~i~i~di~~~~~ 228 (448)
...+.++++.. +.|+|+.|+.+ .....+...|.+.|++++.---.+.... -..+.+.-....-+
T Consensus 55 ----~~~~~~~ll~~~~iD~V~Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf 129 (342)
T COG0673 55 ----AYTDLEELLADPDIDAVYIATPN-ALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRF 129 (342)
T ss_pred ----ccCCHHHHhcCCCCCEEEEcCCC-hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhc
Confidence 12345666664 37999999887 4555666777888888887332221000 01233333344457
Q ss_pred CchhHHHHHHhhh
Q 013156 229 DPLSRAVRHRLRK 241 (448)
Q Consensus 229 dpl~~~~r~~l~~ 241 (448)
+|....+|..+..
T Consensus 130 ~p~~~~~k~li~~ 142 (342)
T COG0673 130 DPAVQALKELIDS 142 (342)
T ss_pred CHHHHHHHHHHhc
Confidence 7888888887765
No 348
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.12 E-value=3 Score=40.28 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.1
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++.|+|.|+ ||+|.++++.|+..|.. +++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence 457888875 89999999999999965 88877664
No 349
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=89.10 E-value=4.2 Score=39.15 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=45.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChH-HHHHHHHhhhhCCCceEEE
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK-ALCLKKHFSSIFPECHIDA 158 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~K-v~~~~~~l~~inP~v~v~~ 158 (448)
.|+++.|+|.|+ ||+|..+++.|+..|. ++.++|.+.-....- ++.+...|+..+. ++.+.+.+.+..+.+.+-.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 467889999985 8999999999999996 477777554322211 1222334665543 2333444444444344433
Q ss_pred E
Q 013156 159 K 159 (448)
Q Consensus 159 ~ 159 (448)
+
T Consensus 83 ~ 83 (266)
T PRK06171 83 N 83 (266)
T ss_pred E
Confidence 3
No 350
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.10 E-value=3.3 Score=42.45 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=29.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~ 219 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDIN 219 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999999998888898778776543
No 351
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.97 E-value=5.3 Score=39.91 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=24.6
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCceEEEEe
Q 013156 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD 115 (448)
+|+|.| .|.+|+++++.|+..|. +++++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 689999 59999999999999985 466665
No 352
>PRK13018 cell division protein FtsZ; Provisional
Probab=88.96 E-value=2.2 Score=44.53 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=34.1
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCcccc
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSV 121 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~ 121 (448)
...+.+|.|||+||-|+.++.+|.+.|+. .+..++.|.-.+
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L 67 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHL 67 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHH
Confidence 35578999999999999999999999976 567778887433
No 353
>PRK06196 oxidoreductase; Provisional
Probab=88.94 E-value=2 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=29.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999988 8999999999999997 47776543
No 354
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.93 E-value=2.1 Score=42.84 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=63.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.|||+|-+|+.++.+|++.|. +++++|.+.=....+.. .|...+....+.+.. -++-+.+.+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~--------~g~~~~~s~~~~~~~--aDvVi~~vp~~-- 68 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD--------KGATPAASPAQAAAG--AEFVITMLPNG-- 68 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------cCCcccCCHHHHHhc--CCEEEEecCCH--
Confidence 379999999999999999999995 68888876433222211 122222222222211 12222222211
Q ss_pred ccchHH-------Hhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 165 ASSEEE-------ILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~-------ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
..... ++. .+-.+|||++. ++.+...+.+.+.+.++.++++--.|+
T Consensus 69 -~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 69 -DLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT 124 (296)
T ss_pred -HHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence 11111 111 11346677665 455667778888888888888766554
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=88.85 E-value=3.3 Score=42.39 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=30.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~ 220 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN 220 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36889999999999999999999998778877654
No 356
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.80 E-value=3.2 Score=44.38 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 45799999999999999999999997 59999865
No 357
>PRK08264 short chain dehydrogenase; Validated
Probab=88.79 E-value=0.6 Score=44.17 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=32.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+++++|+|.|+ |++|+++++.|++.|..++.+++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 56789999985 99999999999999987899888654
No 358
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.75 E-value=0.61 Score=46.47 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=30.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
++|.|||+|-+|+.+|..|+.+|. +++++|.+.=.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHH
Confidence 579999999999999999999997 69999876533
No 359
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=88.75 E-value=0.59 Score=47.68 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=29.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
.|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998654
No 360
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.73 E-value=2.7 Score=40.22 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 67889999976 8999999999999997 68887765
No 361
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.69 E-value=2.5 Score=42.19 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=29.3
Q ss_pred HHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|+++.++|.|+ ||+|.++++.|++.|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3567889999986 7899999999999997 4666554
No 362
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=88.66 E-value=1.2 Score=43.16 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=22.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhC---CceEEEEeCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSG---VGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsG---Vg~i~LiD~D~ 118 (448)
+|.|||||++|..+++.+ +.| +.-+.+.|.|.
T Consensus 2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRDE 36 (255)
T ss_pred eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCCH
Confidence 689999999999998765 545 44455545543
No 363
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=88.65 E-value=0.59 Score=47.52 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=29.7
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEeCCc
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~ 118 (448)
||.|||+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999887 5799999764
No 364
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.61 E-value=0.53 Score=47.24 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=28.6
Q ss_pred EEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|.|||+|.+|+.+|..|+..|.+++.|+|-|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999987
No 365
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.61 E-value=2.3 Score=40.10 Aligned_cols=32 Identities=28% Similarity=0.641 Sum_probs=26.8
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEE
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLV 114 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~Li 114 (448)
|.+++++|+|+ |++|..+++.|+..|.. +.++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 66789999986 89999999999999976 4443
No 366
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.51 E-value=0.42 Score=54.11 Aligned_cols=102 Identities=14% Similarity=0.239 Sum_probs=58.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccc---cccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++|.|||+|-.|+-+|..++.+|+ .++|+|.+.=.+.....+. +-..-.-|+-..+...+.+.++.+. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~------~- 407 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT------L- 407 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe------C-
Confidence 479999999999999999999997 4889997753322211110 0000011222122222222222221 1
Q ss_pred cCCccchHHHhcCCCCEEEEcc-CChHHHHHHHHHHHHcCC
Q 013156 162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRRGL 201 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~-Dn~~~r~~l~~~c~~~~i 201 (448)
+.. -+. ++|+||.|+ .+.+.|..+.+...+.-.
T Consensus 408 -----~~~-~~~-~aDlViEAv~E~l~~K~~vf~~l~~~~~ 441 (737)
T TIGR02441 408 -----DYS-GFK-NADMVIEAVFEDLSLKHKVIKEVEAVVP 441 (737)
T ss_pred -----CHH-Hhc-cCCeehhhccccHHHHHHHHHHHHhhCC
Confidence 112 234 499999987 578888877666555433
No 367
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.50 E-value=0.81 Score=44.31 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=30.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++++|.|+ ||+|..+++.|++.|. ++.++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889999987 9999999999999997 68887654
No 368
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.47 E-value=0.62 Score=47.10 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+|.|||+|-+|+.+|..|+..|.+++.++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999997
No 369
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.46 E-value=1.6 Score=43.27 Aligned_cols=80 Identities=11% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC---ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+.+|.+||+|-+|+.++..|..+|. .+|.++|.+ ..|.+.+.+.+ . +++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~~~----g-~~~--~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASDKY----G-ITI--T- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHHhc----C-cEE--e-
Confidence 4579999999999999999999985 245554332 12223222211 1 221 1
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHH
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC 196 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c 196 (448)
.+..+.+. ++|+||-|+-.......+.++.
T Consensus 55 -----~~~~e~~~-~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 -----TNNNEVAN-SADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -----CCcHHHHh-hCCEEEEEeChHHHHHHHHHHH
Confidence 11224444 4899999999766666665554
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.41 E-value=0.67 Score=46.13 Aligned_cols=34 Identities=32% Similarity=0.356 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
-++|.|||+|..|+.+|..|+++|. +++++|.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 3689999999999999999999996 688988653
No 371
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.39 E-value=1.2 Score=47.60 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=34.3
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccc
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
.+.+++|+|+|+|..|-.+++.|.+.| -.+++.|.+...
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 345899999999999999999999999 669999977665
No 372
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.32 E-value=0.63 Score=47.62 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=31.5
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 5767665
No 373
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.32 E-value=2.7 Score=42.36 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=57.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEecc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL 162 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~ 162 (448)
.+.+|+|.|+|++|..++..+...|+..+..+|... .|.+.+ +++....-+....
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~-------------------~~~~~~----~~~Ga~~~i~~~~-- 214 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-------------------EKLALA----KSLGAMQTFNSRE-- 214 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-------------------HHHHHH----HHcCCceEecCcc--
Confidence 467999999999999999999999988777765421 111211 1111110111100
Q ss_pred CCccchHHHhc-CCCC-EEEEccCChHHHHHHHHHHHHcCCcEEE
Q 013156 163 YDASSEEEILS-GHPD-FVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 163 ~~~~~~~~ll~-~~~D-~Vida~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
.+.+...++.. ..+| +||||+.+..+-....+..+..|.-++.
T Consensus 215 ~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 215 MSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 01111222222 2477 9999999876666666777777764433
No 374
>PRK13984 putative oxidoreductase; Provisional
Probab=88.26 E-value=2.7 Score=46.30 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||+|..|-.+|..|.+.|+ +++|+|.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57789999999999999999999997 588988654
No 375
>PLN02650 dihydroflavonol-4-reductase
Probab=88.23 E-value=7 Score=39.55 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++|+|.|+ |.+|+++++.|+..|. ++++++.+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 568999986 9999999999999996 46665544
No 376
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.22 E-value=0.66 Score=46.75 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=29.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..+|+|||+|++|+.+|..|+++| -.++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 357999999999999999999999 4688887764
No 377
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.13 E-value=0.72 Score=47.21 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=58.0
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|++++|.|||+|.+|..+|+.|...|. ++..+|...- +.. . ..+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~-------~~~---- 187 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---D-------FLT---- 187 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---h-------hhh----
Confidence 36899999999999999999999999996 5778775420 000 0 000
Q ss_pred eccCCccchHHHhcCCCCEEEEccCCh-HHHHHHHHHHHH---cCCcEEEE
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNI-DTKVALLAACVR---RGLKVLCA 206 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~-~~r~~l~~~c~~---~~ip~I~~ 206 (448)
+ ..+.++++.. .|+|+.|+... +++..+++-... .+.-+|+.
T Consensus 188 ---~-~~~l~ell~~-aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 188 ---Y-KDSVKEAIKD-ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred ---c-cCCHHHHHhc-CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 1 1235667765 99999998754 466666644333 34445554
No 378
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=88.12 E-value=1.1 Score=43.03 Aligned_cols=37 Identities=24% Similarity=0.570 Sum_probs=30.7
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++.+++|+|.|+ ||+|.++++.|++.|. ++.++|.+.
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 366789999986 9999999999999996 477777554
No 379
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.09 E-value=0.72 Score=46.29 Aligned_cols=33 Identities=33% Similarity=0.649 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 479999999999999999999996 688888653
No 380
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.07 E-value=0.71 Score=45.80 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..|+|||+|-.|+.+|..|++.|+. ++|+|.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 3699999999999999999999987 889887654
No 381
>PRK09072 short chain dehydrogenase; Provisional
Probab=88.01 E-value=3 Score=40.18 Aligned_cols=35 Identities=37% Similarity=0.611 Sum_probs=29.4
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 46788999985 9999999999999996 58887754
No 382
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.01 E-value=1.9 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=28.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+|.|||+|-+|+.++..|.+.|. .+.++|.|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 369999999999999999999997 567777653
No 383
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.90 E-value=0.67 Score=47.09 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.4
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEeCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
+|.|||+ |.||+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999998887 689999976
No 384
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.90 E-value=9.6 Score=38.62 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=26.4
Q ss_pred hCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+++|+|.| +|.+|+++++.|+..|. ++.+++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 456899998 58899999999999996 4555544
No 385
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.88 E-value=0.64 Score=47.43 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=30.4
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEeC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~ 116 (448)
++-.||+|+|+ |.||+.++..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45569999999 9999999999997776 47999987
No 386
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.79 E-value=0.62 Score=49.88 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 77 e~q~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+....+..++|+|+|+||.|..++..|.+.|. .+++.|.+
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 44556778899999999999999999999998 89999964
No 387
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=87.77 E-value=5.1 Score=39.38 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
..+|+|+|--+=|-.++..|...|+.-+.= +. .+.|.+ .++ .+..+...+
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~S---------------va--t~~g~~-----------~~~--~~~v~~G~l 51 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLS---------------LA--GRTGGP-----------ADL--PGPVRVGGF 51 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEE---------------Ec--cCCCCc-----------ccC--CceEEECCC
Confidence 357999999999999999999888643221 11 123331 112 234455667
Q ss_pred -CccchHHHhc-CCCCEEEEccCChHHHH--HHHHHHHHcCCcEEEEc
Q 013156 164 -DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 -~~~~~~~ll~-~~~D~Vida~Dn~~~r~--~l~~~c~~~~ip~I~~~ 207 (448)
+.+...+++. .++++|||++..++... .+.+.|.+.++|++--.
T Consensus 52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 7777777764 36999999999998754 67799999999999854
No 388
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=87.72 E-value=6.4 Score=39.24 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.3
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-ceEEEEe
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVD 115 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD 115 (448)
+|+|.|+ |++|+++++.|+..|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5889987 9999999999999984 3566643
No 389
>PRK05855 short chain dehydrogenase; Validated
Probab=87.66 E-value=2.5 Score=45.39 Aligned_cols=39 Identities=33% Similarity=0.562 Sum_probs=32.4
Q ss_pred HHHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 78 ~q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.+
T Consensus 309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~ 348 (582)
T PRK05855 309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDID 348 (582)
T ss_pred ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 345678899999986 99999999999999986 7776643
No 390
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=87.58 E-value=0.81 Score=47.89 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCce------EEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D 117 (448)
-.||.|||+ |.||+.+|..|+..|+-. |.|+|.|
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD 84 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE 84 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC
Confidence 358999999 999999999999999853 6666554
No 391
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=87.54 E-value=0.67 Score=52.22 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+-+|..++ ++|+ .++|+|.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence 47999999999999999998 5896 489999774
No 392
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.53 E-value=2.8 Score=41.65 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=59.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
++.++++|-|+ +|+|-++|+.|++-|.. +.|+ .|. +.|-+.+++.|...+ .++++.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLv----------aR~---------~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILV----------ARR---------EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEE----------eCc---------HHHHHHHHHHHHHhh-CceEEEEE
Confidence 46788999998 79999999999999965 6663 232 357788888888887 68888888
Q ss_pred ccCCccc-hHHHh----c--CCCCEEEEccC
Q 013156 161 LLYDASS-EEEIL----S--GHPDFVLDCID 184 (448)
Q Consensus 161 ~~~~~~~-~~~ll----~--~~~D~Vida~D 184 (448)
..++..+ ...+. . ...|++|++..
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 7776543 23222 1 25888887754
No 393
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.49 E-value=0.63 Score=47.10 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=31.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 57999999999999999999998887787 57776653
No 394
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=87.47 E-value=5.1 Score=41.15 Aligned_cols=34 Identities=41% Similarity=0.635 Sum_probs=30.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 224 (373)
T cd08299 191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN 224 (373)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 6789999999999999999999999888888764
No 395
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.44 E-value=2.6 Score=44.63 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=28.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..|+|+|+||.|-.+|..|...|. +++..|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 5679999999999999999999997 58887744
No 396
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.41 E-value=3.8 Score=45.81 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=31.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 46799999999999999999999997 599998653
No 397
>PRK06057 short chain dehydrogenase; Provisional
Probab=87.40 E-value=1.3 Score=42.49 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=31.2
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++++++|+|+|+ ||+|..+++.|+..|. ++.++|.+.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~ 41 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP 41 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 477899999998 9999999999999995 577776543
No 398
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=87.40 E-value=0.76 Score=48.75 Aligned_cols=32 Identities=41% Similarity=0.408 Sum_probs=28.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..+|+|||.|-+|+++|..|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 35899999999999999999999975 899984
No 399
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.40 E-value=4.5 Score=39.69 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=30.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 36789999999999999999888899988888754
No 400
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.37 E-value=3.5 Score=46.76 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.3
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
-..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999997 59999864
No 401
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.35 E-value=4 Score=41.48 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=29.9
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.|+|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~ 41 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARG 41 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 466788999987 8999999999999996 57776643
No 402
>PRK08226 short chain dehydrogenase; Provisional
Probab=87.34 E-value=2.1 Score=41.08 Aligned_cols=36 Identities=33% Similarity=0.687 Sum_probs=29.9
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.+++++|.| .||+|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCC
Confidence 56788999997 578999999999999975 7777643
No 403
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=87.30 E-value=1 Score=45.82 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=30.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS 120 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~ 120 (448)
.|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 59999988764
No 404
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.30 E-value=3.5 Score=42.96 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=28.6
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+...+|+|||+ |-+|..++..|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45679999999 999999999999754346777776
No 405
>PLN02928 oxidoreductase family protein
Probab=87.14 E-value=0.76 Score=47.34 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=56.3
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|... .+.. ....| .|...+...
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~~--------------~~~~~~~~~ 210 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGLL--------------IPNGDVDDL 210 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhhc--------------ccccccccc
Confidence 36899999999999999999999999997 677766420 0000 00000 000000000
Q ss_pred -eccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHH
Q 013156 160 -VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAAC 196 (448)
Q Consensus 160 -~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c 196 (448)
.......+.++++.. .|+|+.+.- +.+++..+++..
T Consensus 211 ~~~~~~~~~L~ell~~-aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 211 VDEKGGHEDIYEFAGE-ADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred ccccCcccCHHHHHhh-CCEEEECCCCChHhhcccCHHH
Confidence 001123456788875 999999885 567777776443
No 406
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.14 E-value=4.1 Score=43.01 Aligned_cols=42 Identities=33% Similarity=0.482 Sum_probs=34.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcccccccccc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH 127 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq 127 (448)
.+|.|||+|-+|..+|..|+..| -+++.+|.|.-....+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~g 45 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINRG 45 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHCC
Confidence 67999999999999999999999 4588999776554445544
No 407
>PRK08589 short chain dehydrogenase; Validated
Probab=87.13 E-value=2.7 Score=40.99 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=28.6
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++++++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467889999987 8999999999999996 466654
No 408
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.11 E-value=4.6 Score=33.38 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred hCCcEEEEcCChHHHHHHHHH-HHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAML-LRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~L-arsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++.+|+|+|+|++|...+..+ ...|.+-..++|.|. ..+|+. +. . +..+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~-----------i~-g--ipV~~- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKE-----------IG-G--IPVYG- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSE-----------ET-T--EEEES-
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcE-----------EC-C--EEeec-
Confidence 467899999999999887543 466888778877663 122221 00 1 22221
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
+-+.+.+.. + .|+.|-|+....++....+++ +.+++-|...
T Consensus 53 --~~~~l~~~~-~-i~iaii~VP~~~a~~~~~~~~-~~gIk~i~nf 93 (96)
T PF02629_consen 53 --SMDELEEFI-E-IDIAIITVPAEAAQEVADELV-EAGIKGIVNF 93 (96)
T ss_dssp --SHHHHHHHC-T-TSEEEEES-HHHHHHHHHHHH-HTT-SEEEEE
T ss_pred --cHHHhhhhh-C-CCEEEEEcCHHHHHHHHHHHH-HcCCCEEEEe
Confidence 222333334 3 888888886655555555544 4788776643
No 409
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=87.07 E-value=2.3 Score=42.23 Aligned_cols=99 Identities=21% Similarity=0.325 Sum_probs=51.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
||+|+|+ |-+|+.+...|...|..-+.+ +.. .-|+ ...+.+.+.+.+..|++-|.+-. ++
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~--------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa--~~ 62 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRS--------------DLDL--TDPEAVAKLLEAFKPDVVINCAA--YT 62 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT--------------CS-T--TSHHHHHHHHHHH--SEEEE-------
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch--------------hcCC--CCHHHHHHHHHHhCCCeEeccce--ee
Confidence 7999995 999999999999887543333 322 1122 23455566666666655444321 11
Q ss_pred ccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcC
Q 013156 165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG 208 (448)
Q Consensus 165 ~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g 208 (448)
.-...+. +++. ...-|...-..|.++|.++++++|+-+.
T Consensus 63 ~~~~ce~---~p~~--a~~iN~~~~~~la~~~~~~~~~li~~ST 101 (286)
T PF04321_consen 63 NVDACEK---NPEE--AYAINVDATKNLAEACKERGARLIHIST 101 (286)
T ss_dssp -HHHHHH---SHHH--HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred cHHhhhh---Chhh--hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence 0000000 0000 0001223335788999999999988654
No 410
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=87.03 E-value=0.77 Score=47.92 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=30.8
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.|++++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 58999999999999999999999999975 666663
No 411
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.02 E-value=0.79 Score=47.08 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=30.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
...|+|||+|-+|+.+|..|++.|+ +++|+|.+..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCC
Confidence 3579999999999999999999997 5999998753
No 412
>PRK06046 alanine dehydrogenase; Validated
Probab=87.02 E-value=3.5 Score=41.98 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=52.6
Q ss_pred hCCcEEEEcCChHHHHHHHHHH-HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
...+|.|||+|+.|...+.+|. ..++.++.++|.+. .+++.+++++.+..+ +++....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence 4578999999999999999998 45788888866553 345555555554333 3343322
Q ss_pred cCCccchHHHhcCCCCEEEEccCChH
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNID 187 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~ 187 (448)
+.++.+. .|+|+.||-+..
T Consensus 187 -----~~~~~l~--aDiVv~aTps~~ 205 (326)
T PRK06046 187 -----DIEEACD--CDILVTTTPSRK 205 (326)
T ss_pred -----CHHHHhh--CCEEEEecCCCC
Confidence 3455553 899999998744
No 413
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=87.01 E-value=2.7 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=28.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~ 39 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRN 39 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 35678899975 8999999999999994 67776643
No 414
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.97 E-value=0.8 Score=51.10 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999874
No 415
>PRK08643 acetoin reductase; Validated
Probab=86.93 E-value=4.2 Score=38.85 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=25.7
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeC
Q 013156 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
++.++|.| .||+|..+++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45677776 57999999999999996 5777663
No 416
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.92 E-value=0.79 Score=46.77 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.4
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCce------EEEEeCCc
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D~ 118 (448)
+|.|+|+ |.+|+.++..|+..|+-. |.|+|-+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 7999999 999999999999988755 99998753
No 417
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=86.91 E-value=0.78 Score=46.86 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCC-c-----eEEEEeC
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGV-G-----RLLLVDF 116 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGV-g-----~i~LiD~ 116 (448)
.||.|||+ |.||+.+|..|+..|+ + +|.|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999999 9999999999999987 4 5888764
No 418
>PRK06182 short chain dehydrogenase; Validated
Probab=86.91 E-value=2.8 Score=40.71 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=27.6
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++.|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~ 36 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARR 36 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4678999986 8999999999999996 46665544
No 419
>PRK06198 short chain dehydrogenase; Provisional
Probab=86.91 E-value=1.5 Score=42.09 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=32.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|+.+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467889999986 8999999999999998778887764
No 420
>PRK06185 hypothetical protein; Provisional
Probab=86.84 E-value=0.87 Score=47.08 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+..|+|||.|-+|..+|..|++.|+ +++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45789999999999999999999997 599999764
No 421
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.82 E-value=1.3 Score=42.03 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 466789999987 9999999999999997 57776554
No 422
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.78 E-value=3.6 Score=39.09 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=28.1
Q ss_pred hhCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+++++|+|.| .|++|+++++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678899998 59999999999999986 5666544
No 423
>PRK08324 short chain dehydrogenase; Validated
Probab=86.73 E-value=6.9 Score=43.89 Aligned_cols=34 Identities=35% Similarity=0.646 Sum_probs=29.0
Q ss_pred hCCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++.|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~ 455 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD 455 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 457899999 59999999999999997 68887754
No 424
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=86.72 E-value=3.7 Score=38.90 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=28.5
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|++++++|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 46789999985 8899999999999986 46665543
No 425
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.72 E-value=4.4 Score=38.76 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++.++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357888877 6799999999999998 68887655
No 426
>PRK08278 short chain dehydrogenase; Provisional
Probab=86.68 E-value=4.7 Score=39.33 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++++|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 56788999986 8999999999999997 57777655
No 427
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=86.65 E-value=3.9 Score=42.80 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=61.7
Q ss_pred hCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
+..+|.|+|+ |.+|.++++.|..--.-+|+++-.+ ...|+. +...+|++.-... .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~~--------i~~~~~~l~~~~~-~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQS--------FGSVFPHLITQDL-P 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCCC--------chhhCccccCccc-c
Confidence 4469999999 7899999999998866667774332 122321 1122222211000 0
Q ss_pred cCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013156 162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP 215 (448)
Q Consensus 162 ~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~g~~~dp 215 (448)
.+..-...+ +. +.|+||-|+.+-.++..+..+ +.+.++|+-++.. +.+|
T Consensus 93 ~~~~~~~~~-~~-~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~f-Rl~~ 141 (381)
T PLN02968 93 NLVAVKDAD-FS-DVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSADF-RLRD 141 (381)
T ss_pred ceecCCHHH-hc-CCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCchh-ccCC
Confidence 011111122 34 499999999997777776664 4688999977654 4443
No 428
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.62 E-value=0.88 Score=47.56 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.5
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
..|++++|.|||+|.+|+.+++.|...|+. +..+|+
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 368999999999999999999999999984 666664
No 429
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=86.61 E-value=0.82 Score=46.70 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=28.6
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCc------eEEEEeCC
Q 013156 86 YVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D 117 (448)
||.|+|+ |.||+.++..|+..|+- .|.|+|-.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~ 39 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP 39 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence 6999999 99999999999998885 59999863
No 430
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.57 E-value=0.96 Score=46.86 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999996 699999984
No 431
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=86.57 E-value=3.7 Score=41.61 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=56.9
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhC-CceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEec
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL 161 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~ 161 (448)
++-+|.|||+|.+|...+..|.++. +.=..++|.|.= ...... +++ .. +..
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e-----------------s~gla~-A~~---~G--i~~----- 54 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE-----------------SDGLAR-ARR---LG--VAT----- 54 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh-----------------hHHHHH-HHH---cC--CCc-----
Confidence 3568999999999999888877753 222223343310 000011 111 11 111
Q ss_pred cCCccchHHHhc----CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 162 LYDASSEEEILS----GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 162 ~~~~~~~~~ll~----~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
..++.++++. .+.|+|++|+.+. ........+.+.|+.+|+-..+
T Consensus 55 --~~~~ie~LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sPA 103 (302)
T PRK08300 55 --SAEGIDGLLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTPA 103 (302)
T ss_pred --ccCCHHHHHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCcc
Confidence 1123445543 3599999999874 5666678888999999986543
No 432
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.57 E-value=3.4 Score=48.35 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=31.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.+++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 57899999999999999999999997 699998653
No 433
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.49 E-value=3.7 Score=38.94 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=24.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceE
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRL 111 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i 111 (448)
+.+++|+|.|+ ||+|.+++..|+..|..-+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 45678999976 7999999999999996533
No 434
>PRK05717 oxidoreductase; Validated
Probab=86.49 E-value=1.6 Score=41.82 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|. |++|+++++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 356788999986 8999999999999995 68887654
No 435
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=86.48 E-value=0.85 Score=47.02 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
...|+|||+|-+|..+|..|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 46799999999999999999999986 99999865
No 436
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.38 E-value=5.3 Score=40.73 Aligned_cols=35 Identities=37% Similarity=0.550 Sum_probs=30.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~ 221 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN 221 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 47899999999999999999889998888777654
No 437
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=86.37 E-value=7.7 Score=39.04 Aligned_cols=114 Identities=25% Similarity=0.282 Sum_probs=66.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~ 164 (448)
.+|.+||+|-.|..+|.+|.++|. .+++.|.+.=....+-+ .-|-.=+...++... .-++-|.... +
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~--~aDvVitmv~---~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA-------AAGATVAASPAEAAA--EADVVITMLP---D 67 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHH--hCCEEEEecC---C
Confidence 479999999999999999999994 47776665322111111 111111111111111 1123333322 2
Q ss_pred ccchHHHhcC---------CCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 165 ASSEEEILSG---------HPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 165 ~~~~~~ll~~---------~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
.....+.+.+ +=.++|||+. ++.+...+.+...++|..++++--.|+
T Consensus 68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg 124 (286)
T COG2084 68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence 2222333221 2457888776 577788999999999999999766654
No 438
>PRK08309 short chain dehydrogenase; Provisional
Probab=86.34 E-value=6.3 Score=36.57 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=62.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+++|+|..|.|..++..|+..|. ++.+++.+. .+++.++..+.. + -++..+...+..
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~~-------------------~~~~~l~~~l~~--~-~~i~~~~~Dv~d 58 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARRE-------------------VKLENVKRESTT--P-ESITPLPLDYHD 58 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-EEEEEECCH-------------------HHHHHHHHHhhc--C-CcEEEEEccCCC
Confidence 58999998999999999999996 466544321 122222222221 1 134444333332
Q ss_pred -cchHHHh------cCCCCEEEEccCChHHHHHHHHHHHHcCCc-----EEEEcCCC
Q 013156 166 -SSEEEIL------SGHPDFVLDCIDNIDTKVALLAACVRRGLK-----VLCATGAG 210 (448)
Q Consensus 166 -~~~~~ll------~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip-----~I~~~g~g 210 (448)
+....++ .+..|++|.++... ....+..+|.+.+++ +++-.|..
T Consensus 59 ~~sv~~~i~~~l~~~g~id~lv~~vh~~-~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 59 DDALKLAIKSTIEKNGPFDLAVAWIHSS-AKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEecccc-chhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 2333322 13588999887764 567888999999988 88876654
No 439
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.29 E-value=2.9 Score=40.03 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=30.3
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+++++++|.|+ ||+|..+++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 56889999986 7999999999999997 577877653
No 440
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.29 E-value=2.1 Score=41.65 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.4
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++.++|.|+ ||+|..+++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367888999986 8999999999999998 58777654
No 441
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=86.28 E-value=1 Score=42.78 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
|++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999998 7999999999999997 5777653
No 442
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.25 E-value=0.98 Score=45.45 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+|.|||+|-+|+.+|.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 69999999999999999999997 699998774
No 443
>PRK06184 hypothetical protein; Provisional
Probab=86.24 E-value=0.88 Score=48.85 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 56899999999999999999999995 9999854
No 444
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=86.24 E-value=1.9 Score=42.85 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=62.4
Q ss_pred EEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCC-ccc
Q 013156 89 VIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD-ASS 167 (448)
Q Consensus 89 VVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~-~~~ 167 (448)
|||+|-.|+.++.+|++.|. +++++|.+.=....+.. .|...+....+.++ +.++-+.+...... .+-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 58999999999999999996 68888876422222211 12222222222222 12333333332110 100
Q ss_pred h---HHHhc--CCCCEEEEccC-ChHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013156 168 E---EEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA 211 (448)
Q Consensus 168 ~---~~ll~--~~~D~Vida~D-n~~~r~~l~~~c~~~~ip~I~~~g~g~ 211 (448)
. ..+.. .+-.+|||++. ++.+...+.+.+.++|+.++++--.|+
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg 119 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGG 119 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCC
Confidence 0 11211 12357888774 345567788888889999998755443
No 445
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.24 E-value=8.1 Score=39.41 Aligned_cols=35 Identities=40% Similarity=0.550 Sum_probs=30.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~ 218 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN 218 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 47899999999999999998889998888887764
No 446
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.19 E-value=1 Score=48.24 Aligned_cols=37 Identities=35% Similarity=0.575 Sum_probs=33.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
.|.+++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5789999999999999999999999998 588877664
No 447
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.19 E-value=1.1 Score=44.79 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
++|.|||+|-.|+.+|..|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999995 688888654
No 448
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.18 E-value=4.7 Score=42.77 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.4
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 46799999999999999999999996 69998865
No 449
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=86.12 E-value=0.9 Score=47.39 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+|||+|..|+.+|..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999975 8888854
No 450
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=86.11 E-value=11 Score=38.66 Aligned_cols=124 Identities=24% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCcEEEE-cCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCC-CceEEEEec
Q 013156 84 GSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP-ECHIDAKVL 161 (448)
Q Consensus 84 ~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP-~v~v~~~~~ 161 (448)
..+|+|. |+|=+||+++..|.+.|-+ +.++| ||+|..+ ..-.+++++.+ .-.|..+..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~ 61 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG 61 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence 4578888 6789999999999999977 44444 6776642 12233333333 223444444
Q ss_pred cCC-ccchHHHhcC-CCCEEEEccC-----------------ChHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceeec
Q 013156 162 LYD-ASSEEEILSG-HPDFVLDCID-----------------NIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA 221 (448)
Q Consensus 162 ~~~-~~~~~~ll~~-~~D~Vida~D-----------------n~~~r~~l~~~c~~~~ip-~I~~~g~g~~~dp~~i~i~ 221 (448)
.+. .+.++.++.. ++|-|+--.. |+..-.-+.+.|.+++.+ +++++++...+.|+++-|+
T Consensus 62 Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~t 141 (343)
T KOG1371|consen 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPIT 141 (343)
T ss_pred ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeecc
Confidence 333 2334444431 3665552111 222334677888888877 6677788888999997776
Q ss_pred cccccc
Q 013156 222 DLREST 227 (448)
Q Consensus 222 di~~~~ 227 (448)
.-..+.
T Consensus 142 e~~~t~ 147 (343)
T KOG1371|consen 142 EEDPTD 147 (343)
T ss_pred CcCCCC
Confidence 665555
No 451
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.09 E-value=2.6 Score=44.76 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=27.1
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|+||| +|++|+.++..|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 689997 89999999999999996 58887754
No 452
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.05 E-value=4.5 Score=38.78 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=26.8
Q ss_pred HhhCCcEEEEc-CChHHHHHHHHHHHhCCceEEE
Q 013156 81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 81 ~L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~L 113 (448)
.|++++|+|.| .||+|..+++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 36678899997 5799999999999999764433
No 453
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.04 E-value=1.1 Score=41.29 Aligned_cols=39 Identities=36% Similarity=0.549 Sum_probs=29.6
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
-.|..++|+|+|.|-+|.-+|..|...| -++++.|-|.+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 3577899999999999999999999999 55899888863
No 454
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=86.04 E-value=9.8 Score=36.82 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=24.9
Q ss_pred EEEEc-CChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
|+|.| +|-+|+++++.|+..|. +++.++.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~ 32 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP 32 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence 56776 58899999999999995 587777654
No 455
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.00 E-value=2.4 Score=44.60 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=30.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+.+++|+|+|.|+.|-.++..|.+.|. +++..|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 457889999999999999999999996 68888865
No 456
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=85.98 E-value=0.88 Score=47.12 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
...|+|||+|-+|+.+|..|++.|+ +++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 3579999999999999999999997 589999775
No 457
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=85.84 E-value=4.2 Score=40.83 Aligned_cols=92 Identities=22% Similarity=0.254 Sum_probs=54.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHh-CCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY 163 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~ 163 (448)
-+|.|||+|.+|...+..+.+. ++.-..++|.|.=+ .... .+++ . .+...
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es-----------------~~la-~A~~---~--Gi~~~------ 52 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPES-----------------DGLA-RARE---L--GVKTS------ 52 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCccc-----------------HHHH-HHHH---C--CCCEE------
Confidence 4799999999999888777764 33333344433200 0001 1111 1 11111
Q ss_pred CccchHHHhc-CCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 164 ~~~~~~~ll~-~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
.+..+.++. .+.|+|++|+.+. ....+...+.+.|+.+|+-.
T Consensus 53 -~~~~e~ll~~~dIDaV~iaTp~~-~H~e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 53 -AEGVDGLLANPDIDIVFDATSAK-AHARHARLLAELGKIVIDLT 95 (285)
T ss_pred -ECCHHHHhcCCCCCEEEECCCcH-HHHHHHHHHHHcCCEEEECC
Confidence 112334443 2499999999886 55666778889999999854
No 458
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=85.80 E-value=5.6 Score=40.90 Aligned_cols=163 Identities=25% Similarity=0.335 Sum_probs=85.7
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
.|..+.+.|+|.|-+||++|..+-..| .++.. .|.+.+....+.+ .++.
T Consensus 143 el~GKTLgvlG~GrIGseVA~r~k~~g-m~vI~--~dpi~~~~~~~a~------------------------gvq~---- 191 (406)
T KOG0068|consen 143 ELRGKTLGVLGLGRIGSEVAVRAKAMG-MHVIG--YDPITPMALAEAF------------------------GVQL---- 191 (406)
T ss_pred EEeccEEEEeecccchHHHHHHHHhcC-ceEEe--ecCCCchHHHHhc------------------------ccee----
Confidence 478999999999999999998876666 44444 3443332222211 1111
Q ss_pred ccCCccchHHHhcCCCCEEEE-ccCChHHHHHHHH---HHHHcCCcEEEEcCCCCccCCCceeecccccccCCchhHHHH
Q 013156 161 LLYDASSEEEILSGHPDFVLD-CIDNIDTKVALLA---ACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVR 236 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vid-a~Dn~~~r~~l~~---~c~~~~ip~I~~~g~g~~~dp~~i~i~di~~~~~dpl~~~~r 236 (448)
-..++++.. .|+|-- |--.++++..+|+ +.-+.|..+|+.+ -|+-.| .+.|.+++.
T Consensus 192 -----vsl~Eil~~-ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~a-RGGvVD-------------e~ALv~Al~ 251 (406)
T KOG0068|consen 192 -----VSLEEILPK-ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVA-RGGVVD-------------EPALVRALD 251 (406)
T ss_pred -----eeHHHHHhh-cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEec-CCceec-------------hHHHHHHHh
Confidence 113344443 666543 2234555555542 2236788999965 333222 233444432
Q ss_pred HHhhhhcCccCCce-EEecCCCccccCCCCCCCCCCCCCCCCCcccCCCcccccCcccchHHHHHHHHHHHHHHHHHcC
Q 013156 237 HRLRKDYGIEGGIP-VVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER 314 (448)
Q Consensus 237 ~~l~~~~g~~g~i~-~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vl~~l~g~ 314 (448)
.|..+|.. -||+.|+|..... +++-..|+ +-..|=+|.-+.=.-.-+|.|+.+.+.++
T Consensus 252 ------sG~vaGaAlDVy~~Epp~~~~~------------~~Lv~hpn--Vi~TpHlgasT~EAq~~iaievaea~~~~ 310 (406)
T KOG0068|consen 252 ------SGQVAGAALDVYPEEPPKNGWD------------SELVSHPN--VIVTPHLGASTEEAQSRIAIEVAEAVSDY 310 (406)
T ss_pred ------cCcccceeeecccCCCCccchh------------HHHhcCCc--eeecCccccchHHHHHHHHHHHHHHHHHH
Confidence 45555543 3788887753100 00111122 22346677444444444777777776664
No 459
>PRK09330 cell division protein FtsZ; Validated
Probab=85.75 E-value=4.5 Score=42.37 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=62.8
Q ss_pred hhCCcEEEEcCChHHHHHHHHHHHhCCc--eEEEEeCCcc--ccccccccccccCCc---cCC-hHHHHHHHHhhhhCCC
Q 013156 82 VSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQV--SVSSLNRHAVATRAD---VGT-PKALCLKKHFSSIFPE 153 (448)
Q Consensus 82 L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V--~~sNLnRq~l~~~~d---iG~-~Kv~~~~~~l~~inP~ 153 (448)
-...+|-|||+||-|+.++.+|.+.|+. .+..++.|.- ..++..+-++....- .|. ..-+.-++...+
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee---- 86 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEE---- 86 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHH----
Confidence 3467899999999999999999999876 4566677763 333333333322210 010 011111111110
Q ss_pred ceEEEEeccCCccchHHHhcCCCCEEEEccC------ChHHHHHHHHHHHHcCCcEEEEc
Q 013156 154 CHIDAKVLLYDASSEEEILSGHPDFVLDCID------NIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 154 v~v~~~~~~~~~~~~~~ll~~~~D~Vida~D------n~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..+.+.+.+.+ +|.|+-+.. +-.+. .+.+++++++++.+...
T Consensus 87 ----------~~e~I~~~l~~-~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVv 134 (384)
T PRK09330 87 ----------SREEIREALEG-ADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVV 134 (384)
T ss_pred ----------HHHHHHHHHcC-CCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEE
Confidence 01122344554 887775443 33444 78899999998877754
No 460
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.74 E-value=0.95 Score=46.19 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCC-c-----eEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGV-G-----RLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGV-g-----~i~LiD~D 117 (448)
-.||.|||+ |.||+.+|..|+..|+ + +|.|+|-.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~ 42 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELP 42 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecC
Confidence 358999999 9999999999998887 4 69998763
No 461
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.71 E-value=5.4 Score=37.73 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.++++|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~ 39 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARS 39 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467889886 9999999999999997 68886654
No 462
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=85.70 E-value=5.1 Score=47.12 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=55.3
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChH--HHHHHHHhhhhCCCceEEEEe
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK--ALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~K--v~~~~~~l~~inP~v~v~~~~ 160 (448)
++++|+|||.|..|-.+|..|++.|. +++|+|.... +.-+.-+.-...-.+| ++...+.+.+.+ +++..-.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~----~GG~l~~gip~~rl~~e~~~~~~~~l~~~G--v~~~~~~ 501 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHV----VGGVLQYGIPSFRLPRDIIDREVQRLVDIG--VKIETNK 501 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC----CcceeeccCCccCCCHHHHHHHHHHHHHCC--CEEEeCC
Confidence 46799999999999999999999997 6999986532 2111111111111122 333444555543 4443321
Q ss_pred ccCCcc-chHHHh-cCCCCEEEEccCCh
Q 013156 161 LLYDAS-SEEEIL-SGHPDFVLDCIDNI 186 (448)
Q Consensus 161 ~~~~~~-~~~~ll-~~~~D~Vida~Dn~ 186 (448)
.+..+ ..+++. ...||.||-|+...
T Consensus 502 -~vg~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 502 -VIGKTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred -ccCCccCHHHHhhccCCCEEEEecCCC
Confidence 12222 233443 23499999998763
No 463
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=85.58 E-value=2.8 Score=48.13 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=59.0
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCC--ceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+.-+|.|+|+|.||+.+++.|.+..- .+- =+|.-++...|-.. .++....+.. +.+.+.+...-
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~-~~~l~v~~i~~s~~-~~~~~~g~~~---~~~~~~~~~~~--------- 529 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKK-NIDLRVCGIANSRK-MLLDEHGIDL---DNWREELAEAG--------- 529 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhc-CCcEEEEEEEcCCc-cccCCCCCCH---HHHHHHHhhcc---------
Confidence 67889999999999999999975431 000 01111222222222 2222222221 11222222211
Q ss_pred ccCCccchHHHhcC---CCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 161 LLYDASSEEEILSG---HPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 161 ~~~~~~~~~~ll~~---~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
..++.+...+++.+ ..|+||||+.+......+ ..+.++|+.+|.+-
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~-~~al~~g~~VVtaN 578 (819)
T PRK09436 530 EPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQY-ADFLAAGFHVVTPN 578 (819)
T ss_pred CCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHH-HHHHHcCCEEEcCC
Confidence 11122222333332 369999999987665555 47788999999864
No 464
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.44 E-value=1.3 Score=42.36 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=29.8
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++|+|.|+ ||+|+++++.|+..|. ++.+++.+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRS 48 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999996 9999999999999997 47776643
No 465
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.38 E-value=1.7 Score=41.35 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=30.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+++++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999987 9999999999999995 57777654
No 466
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=85.34 E-value=7.5 Score=39.81 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh-CCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D 117 (448)
.-||.|||+|.+|..++..|... ++.=+.++|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 46899999999999999999865 66555566776
No 467
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=85.33 E-value=1.2 Score=45.61 Aligned_cols=34 Identities=38% Similarity=0.412 Sum_probs=30.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..|+|||.|-.|..+|..|++.|+ +++|+|.+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 479999999999999999999997 6999997754
No 468
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=85.26 E-value=1.2 Score=46.17 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=29.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHh--CCceEEEEeCCc
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRS--GVGRLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~Lars--GVg~i~LiD~D~ 118 (448)
..|+|||+|-+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 5799999999999999999998 74 799999864
No 469
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=85.06 E-value=3.7 Score=38.27 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhCCCceEEEEeccCCccchH----HHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEc
Q 013156 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEE----EILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207 (448)
Q Consensus 140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~----~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~ 207 (448)
++.+++++++.+|.++|..++..++++..+ ++-..++|+|+.+...++-...+.+.....+.+++.+.
T Consensus 61 ~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gv 132 (177)
T TIGR00696 61 LQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGV 132 (177)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEe
Confidence 478889999999999998876566554323 33344699999999999998888888777777776653
No 470
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=84.94 E-value=5.4 Score=38.50 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.3
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEe
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD 115 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD 115 (448)
++++++++|.|+ ||+|..+++.|+..|.. +.++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 467788999977 79999999999999975 66654
No 471
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=84.91 E-value=2.4 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=29.1
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++.++|.|+ ||+|..+++.|++.|. ++.++|.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999987 7899999999999996 47776643
No 472
>PRK08013 oxidoreductase; Provisional
Probab=84.89 E-value=1.2 Score=46.31 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
+..|+|||+|-+|..+|..|++.|+. ++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence 46899999999999999999999975 89999765
No 473
>PRK07825 short chain dehydrogenase; Provisional
Probab=84.88 E-value=2 Score=41.59 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.1
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
++++.|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence 45678999987 89999999999999975 7776654
No 474
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=84.86 E-value=1.3 Score=47.18 Aligned_cols=32 Identities=41% Similarity=0.491 Sum_probs=28.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
.+|+|||+|-+|+++|..|++.|+ +++|++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 379999999999999999999997 58888843
No 475
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.85 E-value=5.6 Score=38.14 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=29.5
Q ss_pred HhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+|++++|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 477899999987 79999999999999975 5665543
No 476
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.85 E-value=1.1 Score=46.27 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
..+|+|||+|-.|..+|..|++.|+. ++|+|....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLR-IALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCE-EEEEecCCc
Confidence 35699999999999999999999985 999997653
No 477
>PLN02256 arogenate dehydrogenase
Probab=84.85 E-value=1.4 Score=44.67 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.0
Q ss_pred HhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+-+..+|.|||+|.+|+.++..|...|. ++..+|.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~ 68 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRS 68 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECc
Confidence 3366789999999999999999999885 67777754
No 478
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=84.81 E-value=10 Score=37.16 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=24.8
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCC-ceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D 117 (448)
.+.+|+.+|||+ |..+...+...|. ++++-+|..
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s 111 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT 111 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC
Confidence 578999999998 8766655555565 468877754
No 479
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=84.79 E-value=3.9 Score=42.29 Aligned_cols=50 Identities=28% Similarity=0.388 Sum_probs=35.3
Q ss_pred EEEEcCChHHHHHHHHH--HHhCCceEEEEeCCccccccccccccccCCccCC
Q 013156 87 VVVIGLGGVGSHAAAML--LRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT 137 (448)
Q Consensus 87 VlVVG~GGvGs~va~~L--arsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~ 137 (448)
|+|||+|..|+.+|..| ++.|. ++.|||...--.-.-++.-.+...+++.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~ 53 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP 53 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc
Confidence 89999999999999999 67774 7999998754422333333344445554
No 480
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.78 E-value=5.5 Score=39.95 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=33.2
Q ss_pred CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEE
Q 013156 75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL 113 (448)
Q Consensus 75 G~e~q~~L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L 113 (448)
+....++++++-|+|-|| .|+|.++|..|++.|.+-+.+
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lv 42 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLV 42 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEe
Confidence 345678999999999999 599999999999999875544
No 481
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.71 E-value=4.5 Score=41.42 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.2
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|.. +.++|.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~ 215 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISS 215 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 467999999999999999998889975 555553
No 482
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=84.69 E-value=1.1 Score=46.61 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...|+|||+|-+|..+|..|++.|+. ++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999986 8999974
No 483
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=84.66 E-value=6.4 Score=42.10 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=35.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
+-++.++|.|=|+|++|++.++.|.+.|-.-|.|.|.+-+
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~ 286 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGV 286 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCcee
Confidence 5678999999999999999999999999988888887754
No 484
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=84.55 E-value=7.5 Score=35.54 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=56.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccCCc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA 165 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~ 165 (448)
+++|+|+|+.|-.++..|-+.|..-+-++|.+. .+.++.+....-+|. .
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~----~~~~~~i~g~pvlg~---------------------------~ 49 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNP----ALQGTSVDGLPVLGG---------------------------D 49 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCc----cccCcccCCccEECC---------------------------H
Confidence 589999999999999999999988888888773 122222221111121 0
Q ss_pred cchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEE
Q 013156 166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC 205 (448)
Q Consensus 166 ~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~ 205 (448)
+....+.. +.+.++-++.+...+..+.+.+.+.++++..
T Consensus 50 ~~l~~~~~-~~~~~iiai~~~~~~~~i~~~l~~~g~~~~~ 88 (201)
T TIGR03570 50 EDLLRYPP-DEVDLVVAIGDNKLRRRLFEKLKAKGYRFAT 88 (201)
T ss_pred HHHhhhcc-cccEEEEEcCCHHHHHHHHHHHHhCCCcceE
Confidence 01111112 2466676776777788888888887776554
No 485
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=84.45 E-value=1.4 Score=42.70 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=29.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeCCcc
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V 119 (448)
.|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999998 5999997753
No 486
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.38 E-value=1 Score=45.23 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=31.7
Q ss_pred HhhCCcEEEEcCCh-HHHHHHHHHHHhCCceEEEEeCC
Q 013156 81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 81 ~L~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D 117 (448)
.|++++|+|||.|. +|.+++.+|...|. ++++++..
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~ 191 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR 191 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 48899999999999 99999999999994 68887754
No 487
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=84.38 E-value=6.7 Score=46.06 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=31.1
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCc
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~ 118 (448)
..++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 35789999999999999999999997 599998753
No 488
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.33 E-value=1.2 Score=44.13 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
+|+|+|+|++|+.++..|+++|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 5888765
No 489
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=84.32 E-value=4.3 Score=41.77 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhh---hhCCCceEEEE
Q 013156 84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS---SIFPECHIDAK 159 (448)
Q Consensus 84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~---~inP~v~v~~~ 159 (448)
..+|+|+| .|-+|.++++.|.....-+|+.+.... ++.|++-.... .... -.++...+..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~--------------~~~G~~~~~~~-~~~~~~~~~~~~~~~~v- 66 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE--------------RSAGKTYGEAV-RWQLDGPIPEEVADMEV- 66 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh--------------hhcCCcccccc-cccccccccccccceEE-
Confidence 36899998 799999999999977666777763221 12232211110 0000 0000011111
Q ss_pred eccCCccchHHHhcCCCCEEEEccCChHHHHHHHHHHHHcCCcEEEEcCC
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA 209 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~~~c~~~~ip~I~~~g~ 209 (448)
...+.+. +. ++|+|++|+.+-...... +.+.+.|+.+|+-++.
T Consensus 67 ----~~~~~~~-~~-~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls~~ 109 (349)
T PRK08664 67 ----VSTDPEA-VD-DVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNASA 109 (349)
T ss_pred ----EeCCHHH-hc-CCCEEEEeCChhHHHHHH-HHHHHCCCEEEECCch
Confidence 1112222 34 499999999886554444 5667789999987653
No 490
>PRK12831 putative oxidoreductase; Provisional
Probab=84.30 E-value=6.3 Score=42.11 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.5
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 57899999999999999999999997 58998853
No 491
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.24 E-value=1.3 Score=45.22 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.7
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCc------eEEEEeCCc
Q 013156 85 SYVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFDQ 118 (448)
Q Consensus 85 ~~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D~ 118 (448)
.+|+|+|+ |.+|+.++..|+..|+- ++.|+|...
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPP 43 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCC
Confidence 47999999 99999999999998874 799998753
No 492
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.22 E-value=1.3 Score=45.04 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=53.8
Q ss_pred HHhhCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEE
Q 013156 80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK 159 (448)
Q Consensus 80 ~~L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~ 159 (448)
..|.+++|.|||+|.+|..+|+.|...|.. +..+|... + . + + .
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~-------~-----~-~-~-----------------~----- 186 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG-------R-----P-A-R-----------------P----- 186 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC-------C-----c-c-c-----------------c-----
Confidence 369999999999999999999999888874 55554320 0 0 0 0 0
Q ss_pred eccCCccchHHHhcCCCCEEEEccC-ChHHHHHHHHHHHH
Q 013156 160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR 198 (448)
Q Consensus 160 ~~~~~~~~~~~ll~~~~D~Vida~D-n~~~r~~l~~~c~~ 198 (448)
.....++++.. .|+|+.+.- +.+++..+++..-.
T Consensus 187 ----~~~~l~ell~~-sDiv~l~lPlt~~T~~li~~~~~~ 221 (317)
T PRK06487 187 ----DRLPLDELLPQ-VDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred ----cccCHHHHHHh-CCEEEECCCCChHHhcCcCHHHHh
Confidence 01136677775 999998876 67788888765544
No 493
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=84.18 E-value=1.3 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
...|+|||.|-+|..+|..|++.|+ +++|+|..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCC
Confidence 3579999999999999999999997 59999965
No 494
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.12 E-value=3.2 Score=43.22 Aligned_cols=34 Identities=35% Similarity=0.424 Sum_probs=28.7
Q ss_pred hCCcEEEEcCChHHHHHHHHHHHhCCceEEEEeC
Q 013156 83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF 116 (448)
Q Consensus 83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~ 116 (448)
.+.+|+|.|+|++|..++..+...|+..+..+|.
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~ 218 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL 218 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4789999999999999999888999887765443
No 495
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.05 E-value=1.6 Score=41.22 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=30.2
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
+++++++|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 66789999998 8999999999999997 58887753
No 496
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=84.02 E-value=11 Score=37.06 Aligned_cols=61 Identities=33% Similarity=0.381 Sum_probs=42.3
Q ss_pred cEEEEcCChHHHHHHHHH-----HHhCCceEEEEeCCccccccccccccccC--CccCChHHHHHHHHhhh
Q 013156 86 YVVVIGLGGVGSHAAAML-----LRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCLKKHFSS 149 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~~L-----arsGVg~i~LiD~D~V~~sNLnRq~l~~~--~diG~~Kv~~~~~~l~~ 149 (448)
+|.|.|=||+|-.....| ..-|-.++..||.|. -.||.++.-... ..+|. |-+.++++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp--d~nL~~~LGve~~~~~lg~-~~e~~~k~~~a 69 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP--DSNLPEALGVEEPMKYLGG-KRELLKKRTGA 69 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC--CCChHHhcCCCCCCccccc-HHHHHHHHhcc
Confidence 689999999996654444 444547899999998 889999975533 34565 34555555444
No 497
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.90 E-value=2.9 Score=40.05 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=29.9
Q ss_pred hhCCcEEEEcCC---hHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D 117 (448)
|+++.|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 567889999995 799999999999996 68887654
No 498
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=83.89 E-value=5.4 Score=44.78 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=28.7
Q ss_pred hhCCcEEEEcC-ChHHHHHHHHHHHhCCceEEEEeCC
Q 013156 82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD 117 (448)
Q Consensus 82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D 117 (448)
|.++.|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~ 447 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLN 447 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 34678888876 8999999999999997 68887653
No 499
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=83.86 E-value=4.6 Score=37.74 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=56.9
Q ss_pred EEEEc-CChHHHHHHHHHHHhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEeccC-C
Q 013156 87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-D 164 (448)
Q Consensus 87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~ 164 (448)
|+|+| .|-+|+++++.|.+.|..-+.+...+.-. .. ..... +++.+...+ +
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~-------------------~~-~~~~~-------~~~~~~~dl~~ 53 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSE-------------------SF-EEKKL-------NVEFVIGDLTD 53 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGG-------------------HH-HHHHT-------TEEEEESETTS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccc-------------------cc-ccccc-------eEEEEEeeccc
Confidence 68887 68899999999999998744222111100 00 00000 233333332 3
Q ss_pred ccchHHHhcC-CCCEEEEccCCh-----------------HHHHHHHHHHHHcCC-cEEEEcCCCCccC
Q 013156 165 ASSEEEILSG-HPDFVLDCIDNI-----------------DTKVALLAACVRRGL-KVLCATGAGARAD 214 (448)
Q Consensus 165 ~~~~~~ll~~-~~D~Vida~Dn~-----------------~~r~~l~~~c~~~~i-p~I~~~g~g~~~d 214 (448)
.+...+++.. ++|.||.+.... ..-..+.+.|++.++ .+|..++.+...+
T Consensus 54 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~ 122 (236)
T PF01370_consen 54 KEQLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGD 122 (236)
T ss_dssp HHHHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTS
T ss_pred cccccccccccCceEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3444455543 258888776542 122367889998888 7877666544333
No 500
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=83.85 E-value=2.7 Score=44.45 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=50.9
Q ss_pred cEEEEcCChHHHHHHH--HHH---HhCCceEEEEeCCccccccccccccccCCccCChHHHHHHHHhhhhCCCceEEEEe
Q 013156 86 YVVVIGLGGVGSHAAA--MLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV 160 (448)
Q Consensus 86 ~VlVVG~GGvGs~va~--~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~diG~~Kv~~~~~~l~~inP~v~v~~~~ 160 (448)
+|.|||+|++|+..+. .++ .....++.|+|.|.=. +... ...+.+.+....+..+|....
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~---l~~~------------~~~~~~~~~~~~~~~~I~~tt 66 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEER---LETV------------EILAKKIVEELGAPLKIEATT 66 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHH---HHHH------------HHHHHHHHHhcCCCeEEEEeC
Confidence 6999999999998666 454 2222589999866411 1110 011122333334444554322
Q ss_pred ccCCccchHHHhcCCCCEEEEccCChHHHHHHH--HHHHHcCC
Q 013156 161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL--AACVRRGL 201 (448)
Q Consensus 161 ~~~~~~~~~~ll~~~~D~Vida~Dn~~~r~~l~--~~c~~~~i 201 (448)
+..+.+.+ .|+||.++-....+.... +...++++
T Consensus 67 ------D~~eal~~-AD~Vi~ai~~~~~~~~~~de~i~~K~g~ 102 (423)
T cd05297 67 ------DRREALDG-ADFVINTIQVGGHEYTETDFEIPEKYGY 102 (423)
T ss_pred ------CHHHHhcC-CCEEEEeeEecCccchhhhhhhHHHcCe
Confidence 23445565 999999987533322222 35555555
Done!