Query 013159
Match_columns 448
No_of_seqs 206 out of 1926
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bhg_A Adenylosuccinate lyase; 100.0 1E-79 3.5E-84 646.7 30.0 366 74-442 2-375 (459)
2 2qga_B Adenylosuccinate lyase; 100.0 2.7E-78 9.3E-83 636.8 28.0 361 79-442 3-372 (465)
3 2ptr_A Adenylosuccinate lyase; 100.0 6E-75 2.1E-79 610.9 31.5 361 76-442 1-372 (462)
4 4eei_A Adenylosuccinate lyase; 100.0 4.1E-70 1.4E-74 570.5 29.4 325 88-442 2-339 (438)
5 2j91_A Adenylosuccinate lyase; 100.0 7.3E-70 2.5E-74 577.3 28.5 339 82-442 34-389 (503)
6 1yis_A Adenylosuccinate lyase; 100.0 1.5E-69 5.1E-74 572.1 29.5 340 82-442 6-363 (478)
7 1dof_A Adenylosuccinate lyase; 100.0 9.2E-69 3.1E-73 555.2 27.3 326 82-442 1-339 (403)
8 3c8t_A Fumarate lyase; structu 100.0 4.4E-68 1.5E-72 557.3 31.3 332 84-442 5-351 (451)
9 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 7.6E-68 2.6E-72 555.9 29.6 336 84-442 5-357 (454)
10 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 5.1E-67 1.7E-71 549.0 29.9 339 83-442 2-353 (450)
11 1c3c_A Protein (adenylosuccina 100.0 8.7E-67 3E-71 544.3 29.9 323 89-442 2-338 (429)
12 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 1.7E-66 5.8E-71 530.9 29.5 332 85-444 8-352 (359)
13 2pfm_A Adenylosuccinate lyase; 100.0 5E-66 1.7E-70 540.7 29.7 325 88-442 11-350 (444)
14 1k7w_A Delta 2 crystallin; eye 100.0 1.6E-63 5.6E-68 524.7 25.7 325 85-442 9-360 (468)
15 1tj7_A Argininosuccinate lyase 100.0 2.6E-62 8.8E-67 514.3 31.0 325 85-442 2-354 (457)
16 2e9f_A Argininosuccinate lyase 100.0 3.7E-62 1.3E-66 513.7 27.6 326 84-442 3-357 (462)
17 1jsw_A L-aspartase, L-aspartat 100.0 1.8E-58 6.2E-63 487.4 28.2 326 85-442 17-399 (478)
18 1fur_A Fumarase C, FUMC; hydro 100.0 3.5E-57 1.2E-61 476.3 24.5 329 94-442 25-396 (467)
19 1vdk_A Fumarase C, fumarate hy 100.0 3.8E-57 1.3E-61 476.0 24.8 317 104-442 42-396 (466)
20 1yfm_A Fumarase, YFUM; lyase, 100.0 1.7E-56 5.7E-61 472.8 22.7 317 104-442 67-421 (488)
21 3r6q_A Aspartase; aspartate am 100.0 7.2E-56 2.5E-60 466.0 25.1 330 86-442 18-396 (468)
22 3ocf_A Fumarate lyase:delta cr 100.0 3E-55 1E-59 461.8 24.8 336 81-442 30-416 (478)
23 4adm_A Fumarase C, fumarate hy 100.0 6.7E-55 2.3E-59 460.9 23.6 346 81-442 39-418 (495)
24 3gtd_A Fumarase C, fumarate hy 100.0 7.6E-54 2.6E-58 450.7 25.1 350 79-442 30-417 (482)
25 3e04_A Fumarase, fumarate hydr 100.0 2.6E-52 9E-57 439.5 23.8 350 79-442 35-423 (490)
26 4hgv_A Fumarase C, fumarate hy 100.0 3.9E-52 1.3E-56 440.2 24.3 351 79-442 41-428 (495)
27 2wlv_A GAG polyprotein, HIV-2 31.0 46 0.0016 29.3 4.1 51 192-256 42-92 (144)
28 1l6n_A GAG polyprotein; matrix 23.8 63 0.0022 31.6 4.1 74 169-256 153-226 (289)
No 1
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=1e-79 Score=646.66 Aligned_cols=366 Identities=49% Similarity=0.806 Sum_probs=322.8
Q ss_pred ccccccccccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCC-CC--CCCCcHHHHHHHHHHHccCC
Q 013159 74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFN 150 (448)
Q Consensus 74 ~~~~~~~~~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~-gi--Ip~~~a~a~~~i~~~~~~~~ 150 (448)
.+|+++.||++|||+|||.+++++|+.+|||++++++|+++|+||++||+ +. |+ ||+.++++.+.|.+.+++|.
T Consensus 2 ~~~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala---~~~gi~~ip~i~~~~~~~i~~~~~~~~ 78 (459)
T 3bhg_A 2 NAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLA---ANDTIPEVPALDNKARKFLSDLISNFN 78 (459)
T ss_dssp ----CCGGGCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHH---TCTTCTTSCCCCHHHHHHHHHHHHTCC
T ss_pred CCCCcccccccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45788999999999999998888999999999999999999999999999 77 66 66667788888888777887
Q ss_pred cccHHhHHHHHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC 230 (448)
Q Consensus 151 ~~d~~~l~~~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~ 230 (448)
..|+++++++++.++|||+++|++|++++|+.++++++++|||+|||||||++|+++|++|+++...+.+.|.+++++|.
T Consensus 79 ~~d~~~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~ 158 (459)
T 3bhg_A 79 ESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSIT 158 (459)
T ss_dssp HHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888999999999999999999999999864444468999999999999999999999999998239999999999999
Q ss_pred HHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccccCCCCChhhhHHHHHH
Q 013159 231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310 (448)
Q Consensus 231 ~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~ 310 (448)
++|++|++++|+||||+|||+||||||+|++|++.|.|+++||.++..+++++|||||+|++...||++||+.+++++++
T Consensus 159 ~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~~ 238 (459)
T 3bhg_A 159 LLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVT 238 (459)
T ss_dssp HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999878999999999999999
Q ss_pred HcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhh
Q 013159 311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390 (448)
Q Consensus 311 ~LGL~~~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~ 390 (448)
.|||..+++++|+.+||++++++++++.++++|+|||+|||+|++.|++++.++++++|||||||||||+.+|+++|+++
T Consensus 239 ~LGl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~ 318 (459)
T 3bhg_A 239 SLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLG 318 (459)
T ss_dssp HTTCEECSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHHH
T ss_pred HhCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHHH
Confidence 99999999988999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred hhhHHHhhhhhhccccccccccccchH--HHHHhHHH---HHHHHhhcccccccccc
Q 013159 391 KANEDLSFLSMKLPISRWQVRSNLTLL--LIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 391 la~~v~g~la~~L~~s~~qRDl~~~~~--~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+++.....+...++.+.||||+++++. .++..+.+ .+..+..+...++|++|
T Consensus 319 l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e 375 (459)
T 3bhg_A 319 LSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKS 375 (459)
T ss_dssp HHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 877777777777777899999999975 35666665 33445666777888765
No 2
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=2.7e-78 Score=636.78 Aligned_cols=361 Identities=40% Similarity=0.620 Sum_probs=318.0
Q ss_pred cccccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCC-CCCCCCcHHHHHHHHHHHccCCcccHHhH
Q 013159 79 SSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TEVPSFSEEAKSYLQGLIDGFNMDDALEV 157 (448)
Q Consensus 79 ~~~~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~-giIp~~~a~a~~~i~~~~~~~~~~d~~~l 157 (448)
+.|+++|||+|||.+++++|+.+|||++++++|++||+||++||+ +. |+||+++++++..+.+.+++|...|++++
T Consensus 3 ~~~~~~s~~~gRy~~~~~~~~~~~sd~~~~~~~i~ve~A~~~ala---~~~gii~~~~~~~i~~l~~~~~~~~~~d~~~i 79 (465)
T 2qga_B 3 EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLN---EEELFFEKVTDHSVEVLNQIATNITDSDIARV 79 (465)
T ss_dssp CGGGCSSTTTTTTHHHHGGGGGTSSHHHHHHHHHHHHHHHHHHHH---HHTSSSCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccccccCcccccccCCcHHHHHHhCHHHHHHHHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHHHhhccccHHHH
Confidence 568999999999998777899999999999999999999999999 67 99999999999887767778877688889
Q ss_pred HHHHhhhCCcHhHHHHHHHHHhccC--cchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 158 KNIERVTNHDVKAVEYFLKQKCQSQ--PEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (448)
Q Consensus 158 ~~~e~~t~hDv~a~e~~L~~~~g~~--~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~ 235 (448)
+++++.++|||+++|++|++++|.. +++.++++|||+|||||||++|+++|++|+++...+.+.|.+++++|.++|++
T Consensus 80 ~~~e~~~~hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~ 159 (465)
T 2qga_B 80 KAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVE 159 (465)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999842 22335799999999999999999999999999823999999999999999999
Q ss_pred cccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccccCCCCChhhhHHHHHHH-cCC
Q 013159 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-LGL 314 (448)
Q Consensus 236 ~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~-LGL 314 (448)
|+++||+||||+|||+||||||+|++|+++|.|+++||.++..+++++|||||+|++...||+.||+.+.+++++. |||
T Consensus 160 ~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~p~~d~~~~~~~~~~~~LGl 239 (465)
T 2qga_B 160 YSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNL 239 (465)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSCCEECCCCTTSSCHHHHHHCTTCCHHHHHHHHHHHHHCC
T ss_pred ccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCccccccccCcccHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999987888899999999998789999999999999876 999
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhH
Q 013159 315 SFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 315 ~~~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
+.+++++|+.+||++++++++++.++++|+|||+|||+|++.|++++.++++++|||||||||||+.+|+++|++++++.
T Consensus 240 ~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~ 319 (465)
T 2qga_B 240 TYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANA 319 (465)
T ss_dssp EECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEC-------CCSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeeeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99888789999999999999999999999999999999999888888899999999999999999999999999997777
Q ss_pred HHhhhhhhccccccccccccchH--HHHHhHHH---HHHHHhhcccccccccc
Q 013159 395 DLSFLSMKLPISRWQVRSNLTLL--LIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 395 v~g~la~~L~~s~~qRDl~~~~~--~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
....+...++.++||||+++++. .++..+.+ ....+..+...++|++|
T Consensus 320 ~~~~~~~~l~~~~~erdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~ 372 (465)
T 2qga_B 320 FFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRR 372 (465)
T ss_dssp HHHHHHHHTTCCSTTBCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHH
T ss_pred HHHHHHHhhcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 77766666666899999999943 45676665 33344456677777765
No 3
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=6e-75 Score=610.90 Aligned_cols=361 Identities=56% Similarity=0.890 Sum_probs=317.8
Q ss_pred ccccccccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCC-CC--CCCCcHHHHHHHHHHHccCCcc
Q 013159 76 FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFNMD 152 (448)
Q Consensus 76 ~~~~~~~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~-gi--Ip~~~a~a~~~i~~~~~~~~~~ 152 (448)
|++++||++|||+|||.++++++..+|||++++++|+.||+||+++++ +. |+ ||+.++++.+.|.+.+++|...
T Consensus 1 ~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~i~~~~~ve~A~a~ala---~~g~i~~ip~i~~~~a~~I~~~~~~i~~g 77 (462)
T 2ptr_A 1 MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLA---AHAAIKEVPAFAADAIGYLDAIVASFSEE 77 (462)
T ss_dssp CCCCTTTCSSTTTTTTGGGSGGGGGTTSHHHHHHHHHHHHHHHHHHHH---HCTTCTTSCCCCHHHHHHHHHHHHTCCHH
T ss_pred CCcccccccCcccccccCchHHHHHHCCcHHHHHHHHHHHHHHHHHHH---HcCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 357889999999999999888999999999999999999999999999 67 44 4545577777787777777655
Q ss_pred cHHhHHHHHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEI 232 (448)
Q Consensus 153 d~~~l~~~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~l 232 (448)
|++.+++++..++|||+++|+.|++++|..+++.+.++|||+|||||||++|+++|++|+++..++.+.|.+|+++|.++
T Consensus 78 ~~~~~~~~~~~~~~dv~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~ 157 (462)
T 2ptr_A 78 DAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDL 157 (462)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhccccCCCHHHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999985322335789999999999999999999999999823999999999999999
Q ss_pred HHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccccCCCCChhhhHHHHHHHc
Q 013159 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312 (448)
Q Consensus 233 A~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~L 312 (448)
|++|++++|+||||+|||+|||||+||++|++.|.|+++||.++.+.|+++|||||++++...||++||+.+.+++++.|
T Consensus 158 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~~~~~~~~~~~~~~v~~~~~~~L 237 (462)
T 2ptr_A 158 AVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSL 237 (462)
T ss_dssp HHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCTTSSCHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhcchhhcccccCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888889999999887776789899999999999999
Q ss_pred CCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhh
Q 013159 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (448)
Q Consensus 313 GL~~~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (448)
||..|++++|+.+||++++++++++.++++|+|||+||++|++.+++.+.++++++|||||||||||+.+|+++++++
T Consensus 238 Gl~~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~~~~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~-- 315 (462)
T 2ptr_A 238 GIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLG-- 315 (462)
T ss_dssp TCEECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECCCTTCCSCSSCTTCCCCHHHHHHHHHHH--
T ss_pred CCCCCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhccCCCCCCcCCCCCCCCCcHHHHHHHHHHH--
Confidence 999899877899999999999999999999999999999999866666678999999999999999999999999766
Q ss_pred hHHHhhh---hhhccccccccccccchH--HHHHhHHH---HHHHHhhcccccccccc
Q 013159 393 NEDLSFL---SMKLPISRWQVRSNLTLL--LIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 393 ~~v~g~l---a~~L~~s~~qRDl~~~~~--~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
++.|.. ...++.++||||+++++. .++..+.. ....+..+...++|++|
T Consensus 316 -~v~g~~~~~~~~~~~~~~erd~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 372 (462)
T 2ptr_A 316 -LSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRD 372 (462)
T ss_dssp -HHHHHHHHHHHHTTCCSTTCCTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHH
T ss_pred -HHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 666644 444566789999999887 56676666 34445567777888765
No 4
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=4.1e-70 Score=570.52 Aligned_cols=325 Identities=24% Similarity=0.298 Sum_probs=274.0
Q ss_pred CccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHhhhCCc
Q 013159 88 DGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167 (448)
Q Consensus 88 dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~~t~hD 167 (448)
-.||++ ++|+.+|||+++++.|++||+||+++++ + |+||+++++++ .+.+ +| |+++++++++.++||
T Consensus 2 ~~ry~~--~~m~~~fs~~~~~~~~l~ve~Ala~a~~---~-GlIp~~~~~~i---~~~~-~~---d~~~i~~~e~~~~hd 68 (438)
T 4eei_A 2 IKRYDV--AEISKIWADENKYAKMLEVELAILEALE---D-RMVPKGTAAEI---RARA-QI---RPERVDEIEKVTKHD 68 (438)
T ss_dssp CGGGCC--HHHHHHHSHHHHHHHHHHHHHHHHHHGG---G-TTSCTTHHHHH---HHHC-CC---CHHHHHHHHHHHSCH
T ss_pred CcccCc--HHHHHHcChHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHH---HhhC-CC---CHHHHHHHHHhcCCC
Confidence 358985 7999999999999999999999999999 8 99998777775 3333 34 799999999999999
Q ss_pred HhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013159 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 168 v~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
|+++|++|++++|+ ++++|||+|+|||||++|+++|++|+++. .+.+.|.+++++|.++|++|++++|+||||+
T Consensus 69 V~a~~~~l~e~~g~-----~~~~~iH~G~SsnDv~~Ta~~L~lr~~~~-~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHl 142 (438)
T 4eei_A 69 IIAFCTSIAEQFTA-----ETGKFFHFGVTSSDIIDSALSLQIRDSMS-YVIKDLEALCDSLLTKAEETKEIITMGRSHG 142 (438)
T ss_dssp HHHHHHHHHTTSCT-----TTTTTTTCSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHcCH-----HhhcccCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCcccccccC
Confidence 99999999999986 24999999999999999999999999998 5999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCCCcccc
Q 013159 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE 324 (448)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~~qi~ 324 (448)
|||+||||||||++|++.|.|+++||.++. ..+++||||||+... + +.+++.+++.|||+.++.++|+.
T Consensus 143 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGT~~~~-------~-~~~~~~~a~~LG~~~~~~~~~v~ 214 (438)
T 4eei_A 143 MFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCIL-------T-TEDEKKAADILGLPVEEVSTQVI 214 (438)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTSCCSSS-------C-HHHHHHHHHHHTCCBCSSCSSSC
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCccHhhCcccc-------c-HHHHHHHHHHcCCCCCCcccccc
Confidence 999999999999999999999999999986 678888999996432 1 45789999999998777778999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhh--hccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhhh
Q 013159 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYI--SLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK 402 (448)
Q Consensus 325 ~rD~~ael~~~la~i~~~L~kia~Di~l~~--s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~~ 402 (448)
+||++++++++++.++++|+|||+||++|+ ++|++.++++++++|||||||||||+.+|++++ +|++++|++...
T Consensus 215 ~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~~~f~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~g~~~~~ 291 (438)
T 4eei_A 215 PRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVYEGFSKGQKGSSTMPHKKNPISTENLTG---MARMLRSHVSIA 291 (438)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEECCC------------CCCCHHHHHHHH---HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccccccCCCCCCCCCCCCCcHHHHHHHH---HHHHHHHHHHHH
Confidence 999999999999999999999999999998 488887766789999999999999999999997 566999987544
Q ss_pred c-c-ccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 403 L-P-ISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 403 L-~-~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+ + .++||||++++. ..+++.+.. ...++..+...++|++|
T Consensus 292 ~~~~~~~~erdl~~~~~er~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 339 (438)
T 4eei_A 292 LENCVLWHERDISHSSAERFYLPDNFGIMVYALRRMKNTIDNLVVQRD 339 (438)
T ss_dssp HHTTCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HhccchhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 4 2 367899999983 455565555 55566777778888765
No 5
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=7.3e-70 Score=577.32 Aligned_cols=339 Identities=19% Similarity=0.217 Sum_probs=285.0
Q ss_pred ccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCC-CCCCcHHHHHHHHHHHccCCcccHHhHHHH
Q 013159 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE-VPSFSEEAKSYLQGLIDGFNMDDALEVKNI 160 (448)
Q Consensus 82 ~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~gi-Ip~~~a~a~~~i~~~~~~~~~~d~~~l~~~ 160 (448)
.++||+++||++ ++|+.+|||+++++.|+++|+||+++++ ++|+ ||+ ++.+.|.+.+++| |.+.++++
T Consensus 34 ~~~spl~~ry~~--~~m~~~fS~~~~~~~~~~~e~Ala~a~~---~~Gl~i~~---e~~~~I~~~l~~i---~~~~~~~~ 102 (503)
T 2j91_A 34 SYRSPLASRYAS--PEMCFVFSDRYKFRTWRQLWLWLAEAEQ---TLGLPITD---EQIREMKSNLENI---DFKMAAEE 102 (503)
T ss_dssp SCCCHHHHTTSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTCSCCH---HHHHHHHTTSSCC---CHHHHHHH
T ss_pred cccCCcccccCC--HHHHHHhChhHHHHHHHHHHHHHHHHHH---HcCCCCCH---HHHHHHHHHHhhc---CHHHHhhh
Confidence 488999999997 5999999999999999999999999999 8999 885 5655566655565 56778888
Q ss_pred HhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccce
Q 013159 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANIS 240 (448)
Q Consensus 161 e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~ 240 (448)
++.++|||++++++|++++|+ +++|||+||||||+++|+..|++|+++. .+.+.|.+|+++|.++|++|++++
T Consensus 103 e~~~~hDV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~dta~~L~lr~al~-~l~~~L~~L~~~L~~~A~~~~~~~ 175 (503)
T 2j91_A 103 EKRLRHDVMAHVHTFGHCCPK------AAGIIHLGATSCYVGDNTDLIILRNALD-LLLPKLARVISRLADFAKERASLP 175 (503)
T ss_dssp HHHHSCHHHHHHHHHHHHCTT------TGGGTTTTCCTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hhhcCCcHHHHHHHHHHHhcc------ccccccCCCCHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcE
Confidence 999999999999999999975 7999999999999999999999999999 599999999999999999999999
Q ss_pred eeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCCh---hhhHHHHHHHcCC
Q 013159 241 MLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLGL 314 (448)
Q Consensus 241 m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~---~~v~~~la~~LGL 314 (448)
|+||||+|||+||||||+|++|+++|.|+++||.++. ..+.+||++||+++++..|| .|| +.+.+.+++.|||
T Consensus 176 m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~~lg~gG~~GT~a~~~~~f~-~D~~~~~~v~~~~a~~LGl 254 (503)
T 2j91_A 176 TLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFE-GDDHKVEQLDKMVTEKAGF 254 (503)
T ss_dssp EEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCCTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTTC
T ss_pred eeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhhccccC-CchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999885 23445899999888876687 788 6777899999999
Q ss_pred CC-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhh
Q 013159 315 SF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKAN 393 (448)
Q Consensus 315 ~~-~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~ 393 (448)
+. ++.++|+.+||++++++++++.++++|+|||+|||+|+++|++.+++..+++|||||||||||+.+|++++ +|+
T Consensus 255 ~~~~~~s~~~~~rd~~~e~~~~la~la~~L~kia~Dirll~s~~ei~ep~~~~q~GSSiMP~K~NPv~~E~i~~---~a~ 331 (503)
T 2j91_A 255 KRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCS---LAR 331 (503)
T ss_dssp SCBCSCCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSEECCC-----------CCCCCHHHHHHHH---HHH
T ss_pred CCCCCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeccccCCCCCCCCCccccCcHHHHHHHH---HHH
Confidence 95 44556899999999999999999999999999999999999999876688999999999999999999887 666
Q ss_pred HHHhhhhhhcc---ccccccccccchHH------HHHhHHHHHHHHhhcccccccccc
Q 013159 394 EDLSFLSMKLP---ISRWQVRSNLTLLL------IFFNFDLWLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 394 ~v~g~la~~L~---~s~~qRDl~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~ 442 (448)
+++|+++..+. ..++|||+..+... .+...+....++..+...++|++|
T Consensus 332 ~v~g~~~~~~~~~~~~~~erd~~~s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~e 389 (503)
T 2j91_A 332 HLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPK 389 (503)
T ss_dssp HHHHTTHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred HHHHHHHHHHHHHccCcccccccchHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 99998864442 45789999986432 233333366677777778888765
No 6
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.5e-69 Score=572.07 Aligned_cols=340 Identities=20% Similarity=0.170 Sum_probs=281.7
Q ss_pred ccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCC--CCCCcHHHHHHHHHHHccCCcccHHhHHH
Q 013159 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTE--VPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 82 ~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~gi--Ip~~~a~a~~~i~~~~~~~~~~d~~~l~~ 159 (448)
..+||+++||.++ ++|+.+|||+++++.|+++|+||+++++ ++|+ ||+ ++.+.|.+.+++| |.+.+++
T Consensus 6 ~~~spl~~ry~~~-~~m~~~fs~~~~~~~~~~~e~Ala~a~~---~~Gl~~i~~---~~~~~I~~~l~~i---~~~~~~~ 75 (478)
T 1yis_A 6 KFESVLSTRYCKN-SPLVSILSETNKATLWRQLWIWLAEAEK---ELGLKQVTQ---DAIDEMKSNRDVF---DWPFIRS 75 (478)
T ss_dssp SCCCHHHHTTTTT-CTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTCTTSCH---HHHHHHHHTTTCC---CHHHHHH
T ss_pred cCCCCcccccCCh-HHHHHHcCchHHHHHHHHHHHHHHHHHH---HcCCCCCCH---HHHHHHHHHHHhC---CHHHHhh
Confidence 4789999999975 4499999999999999999999999999 8998 885 5555566666666 5677888
Q ss_pred HHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 013159 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANI 239 (448)
Q Consensus 160 ~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt 239 (448)
+++.++|||.+++++|++++|+ +++|||+||||||+++|+..|++|+++. .+.+.|.+|+++|.++|++|+++
T Consensus 76 ~e~~~~~DV~a~v~~l~e~~g~------~~~~iH~G~TS~Di~~ta~~L~lr~~l~-~l~~~L~~L~~~L~~~A~~~~~~ 148 (478)
T 1yis_A 76 EERKLKHDVMAHNHAFGKLCPT------AAGIIHLGATSCFVQDNADLIAYRDSID-HILKRFATVIDRLAAFSLKNKEV 148 (478)
T ss_dssp HHHHSSCHHHHHHHHHHHHCTT------TGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCcHHHHHHHHHHhhhh------chhheeCCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 8899999999999999999975 7999999999999999999999999999 59999999999999999999999
Q ss_pred eeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCCh---hhhHHHHHHHcC
Q 013159 240 SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNW---PQITEDFVKSLG 313 (448)
Q Consensus 240 ~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~---~~v~~~la~~LG 313 (448)
+|+||||+|||+||||||+|++|+++|.|+++||.++. ..+.+||++||+++++..|| .|| +.+.+.+++.||
T Consensus 149 ~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~~lg~gg~~GT~a~~~~~f~-~d~~~~~~v~~~~a~~LG 227 (478)
T 1yis_A 149 VTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFA-GDESKVEALDELVTKKAN 227 (478)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSCTTTSSCHHHHHHTT-TCHHHHHHHHHHHHHHTT
T ss_pred eeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccchhhhcccC-cchhhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999885 23445899999888776687 788 677799999999
Q ss_pred CCC-CCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhh
Q 013159 314 LSF-NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKA 392 (448)
Q Consensus 314 L~~-~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la 392 (448)
|+. ++.++|+.+||++++++++++.++++|+|||+|||+|+++|++.+++.++++||||||||+||+.+|++++ +|
T Consensus 228 ~~~~~~~s~~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll~s~~el~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a 304 (478)
T 1yis_A 228 FSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFEKDQIGSSAMPYKKNPMKSERCCA---LS 304 (478)
T ss_dssp CSCBCSSCSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEECC-------------CCCCHHHHHHHH---HH
T ss_pred cCCCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccccCCCCccccCCcccCCHHHHHHHH---HH
Confidence 995 34445899999999999999999999999999999999999999866678999999999999999999987 56
Q ss_pred hHHHhhhhhhcc---ccccccccccchHH---HHHhHHH---HHHHHhhcccccccccc
Q 013159 393 NEDLSFLSMKLP---ISRWQVRSNLTLLL---IFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 393 ~~v~g~la~~L~---~s~~qRDl~~~~~~---~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
++++|+++..+. ..++|||+..+... +.+.++. ...++..+...++|++|
T Consensus 305 ~~v~g~~~~~~~~~~~~~~er~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 363 (478)
T 1yis_A 305 RKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTD 363 (478)
T ss_dssp HHHHTSHHHHHHHHHTCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHhHHHHHHHhccCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHH
Confidence 699998864442 35789999886432 2333333 56666777777777765
No 7
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=9.2e-69 Score=555.23 Aligned_cols=326 Identities=23% Similarity=0.254 Sum_probs=267.0
Q ss_pred ccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHH
Q 013159 82 TALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIE 161 (448)
Q Consensus 82 ~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e 161 (448)
|++||+++||.+ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|. +. +| |.+.+.+++
T Consensus 1 m~~sp~~~ry~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~---~a--~~---d~~~~~~~~ 67 (403)
T 1dof_A 1 MHVSPFDWRYGS--EEIRRLFTNEAIINAYLEVERALVCALE---ELGVAERGCCEKVN---KA--SV---SADEVYRLE 67 (403)
T ss_dssp -CCCGGGTTSSC--HHHHTTSSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHHH---HC--CC---CTTTC----
T ss_pred CCCCCcccccCc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHH---HC--CC---CHHHHHHHh
Confidence 678999999996 7999999999999999999999999999 89999987777753 32 44 566777788
Q ss_pred hhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013159 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 162 ~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
.+++|||+++|+.|.+++| +++||+||||||+++|+++|++|+++. .+.+.|.+|+++|.++|++|++++|
T Consensus 68 ~~~~~dVia~~~~l~e~~G--------g~~vH~g~SsnD~~~Ta~~l~~r~~l~-~l~~~l~~L~~~L~~~A~~~~~~~~ 138 (403)
T 1dof_A 68 RETGHDILSLVLLLEQKSG--------CRYVHYGATSNDIIDTAWALLIRRALA-AVKEKARAVGDQLASMARKYKTLEM 138 (403)
T ss_dssp ----CHHHHHHHHHHHHHC--------CSCTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hccCCcHHHHHHHHHHHcC--------CCcccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCee
Confidence 8899999999999999985 579999999999999999999999999 4999999999999999999999999
Q ss_pred eccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCC
Q 013159 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (448)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~ 318 (448)
+||||+|||+||||||||++|++.|.|+ +||.++. ..+++||||||..+.+. | + +.+++.+++.|||+.++
T Consensus 139 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~~~~lGgAvGt~~~~~~-~---~-~~~~~~~a~~lGl~~~~ 212 (403)
T 1dof_A 139 VGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFIRAKIGGAVGTMASWGE-L---G-LEVRRRVAERLGLPHHV 212 (403)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHCCBCCCCTTSSCGGGGG-G---H-HHHHHHHHHHTTCCBCS
T ss_pred eccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhcccCccHHHhhCccccc-c---c-HHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999 9999996 57788999999654422 2 2 56889999999999988
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHH
Q 013159 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 319 ~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~ 396 (448)
.+++..+||++++++++++.++++|+|||+||++|++ +|++++ | + +||||||||+||+.+|++++++ +++.
T Consensus 213 ~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ei~l--p-~-~GSSiMP~K~NP~~~E~i~~~a---~~v~ 285 (403)
T 1dof_A 213 ITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEVVE--G-G-GGSSAMPHKANPTASERIVSLA---RYVR 285 (403)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEES--C-C----------CCCHHHHHHHHHH---HHHH
T ss_pred CcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCeEeC--C-C-CccCCCCCCCCchHHHHHHHHH---HHHH
Confidence 7655449999999999999999999999999999986 666665 4 6 9999999999999999999854 4888
Q ss_pred hhhhhhcc--ccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 397 SFLSMKLP--ISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 397 g~la~~L~--~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
|+....+. .++||||++++. ..+++.++. ...++..+...++|++|
T Consensus 286 g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 339 (403)
T 1dof_A 286 ALTHVAFENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE 339 (403)
T ss_dssp HHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHHHcCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 87654331 488999999974 455666666 56677788888888765
No 8
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=4.4e-68 Score=557.26 Aligned_cols=332 Identities=16% Similarity=0.182 Sum_probs=276.7
Q ss_pred CCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHc--cCCcccHHhHHHHH
Q 013159 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID--GFNMDDALEVKNIE 161 (448)
Q Consensus 84 ~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~--~~~~~d~~~l~~~e 161 (448)
.+||+|||.+ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++| .+.++ +| |.+.+.+++
T Consensus 5 ~~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~~~~---~~~~~~~~~ 73 (451)
T 3c8t_A 5 SPLYGRSFAD--DKMRELFSAQSFISRCVETEVALARAQA---RLGIIPEDAAAGI---TAAARTFAP---EMERLRDDT 73 (451)
T ss_dssp -CCSSCCCSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHCCC---CHHHHHHHH
T ss_pred CCccccccCc--HHHHHHcCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHhhhcCC---CHHHHHHHh
Confidence 4699999997 6999999999999999999999999999 8999997655554 44443 44 677888888
Q ss_pred hhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccee
Q 013159 162 RVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM 241 (448)
Q Consensus 162 ~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m 241 (448)
.+++|||+++|+.|.+++|. .+++||+|||||||++|+++|++|+++. .+.+.|.+|+++|.++|++|++++|
T Consensus 74 ~~~~~dVia~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~L~lr~~l~-~l~~~l~~L~~~L~~~A~~~~~~~~ 146 (451)
T 3c8t_A 74 EIVGYPILPLVEQLSAHAGE------AGKYLHWGATTQDIMDTATVLQIRDGLA-LISRRIESVRKALAALARNHRDTPM 146 (451)
T ss_dssp HHHSSSHHHHHHHHHHHHGG------GGGGSSSSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hcCCCcHHHHHHHHHHHccc------ccccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCcee
Confidence 88999999999999999985 6899999999999999999999999999 4999999999999999999999999
Q ss_pred eccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCC
Q 013159 242 LSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNP 318 (448)
Q Consensus 242 ~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~ 318 (448)
+||||+|||+||||||||++|++.|.|+++||.++. ..+++||||||..+.+ +++ +.+++.+++.|||+.++
T Consensus 147 ~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~----~~~-~~~~~~~a~~LGl~~~~ 221 (451)
T 3c8t_A 147 AGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVLVVEFSGASGTLASLG----TRG-LDVQRELARELNLGVPS 221 (451)
T ss_dssp EEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCCTTSSCGGGT----TCH-HHHHHHHHHHHTCBCCS
T ss_pred ecccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhcCcccc----ccc-HHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999996 5788899999965543 223 57889999999999988
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHH
Q 013159 319 YVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDL 396 (448)
Q Consensus 319 ~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~ 396 (448)
.++++ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +|++++
T Consensus 222 ~~~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~v~ 297 (451)
T 3c8t_A 222 ITWHS-ARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILA---GARIVR 297 (451)
T ss_dssp SCCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECC---------------CCHHHHHHHH---HHHHHH
T ss_pred CCCcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccCCCCCCCCCCCcCCHHHHHHHH---HHHHHH
Confidence 76554 8999999999999999999999999999986 67677654458899999999999999999998 556999
Q ss_pred hhhhhhc--cccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 397 SFLSMKL--PISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 397 g~la~~L--~~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
|+.+..+ ..++||||++++. ..+++.++. .+.++..+...++|++|
T Consensus 298 g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 351 (451)
T 3c8t_A 298 NHATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPD 351 (451)
T ss_dssp HHHHHHHHHTCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHH
T ss_pred HHHHHHHhcCchhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 9886655 3588999999973 455677766 56677788888888875
No 9
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=7.6e-68 Score=555.89 Aligned_cols=336 Identities=19% Similarity=0.211 Sum_probs=277.0
Q ss_pred CCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHc----cCCcccHHhHHH
Q 013159 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLID----GFNMDDALEVKN 159 (448)
Q Consensus 84 ~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~----~~~~~d~~~l~~ 159 (448)
.+||+|||.+ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++| .+.++ +| |.+.+..
T Consensus 5 ~~~~~~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~~~~---~~~~~~~ 73 (454)
T 1q5n_A 5 SQLYASLFYQ--RDVTEIFSDRALVSYMVEAEVALAQAQA---QVGVIPQSAATVI---QRAAKTAIDKI---DFDALAT 73 (454)
T ss_dssp -CTTHHHHSC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHTTHHHHC---CHHHHHH
T ss_pred CCccccccCc--HHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHhhhcC---CHHHHHH
Confidence 3589999996 7999999999999999999999999999 8999997666665 44443 55 5677777
Q ss_pred HHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 013159 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANI 239 (448)
Q Consensus 160 ~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt 239 (448)
++.+++|||+++|+.|.+++|.. +.+.++|||+|||||||++|+++|++|+++. .+.+.|..|+++|.++|++|+++
T Consensus 74 ~~~~~~~dVia~~~~l~e~~g~~--~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~-~l~~~l~~L~~~L~~~A~~~~~~ 150 (454)
T 1q5n_A 74 ATGLAGNIAIPFVKQLTAIVKDA--DEDAARYVHWGATSQDILDTACILQCRDALA-IVQNQVQQCYETALSQAQTYRHQ 150 (454)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHTT--CTTGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhhccCCcHHHHHHHHHHHhccc--cCCccccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc
Confidence 88889999999999999999521 0137899999999999999999999999999 49999999999999999999999
Q ss_pred eeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCC
Q 013159 240 SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316 (448)
Q Consensus 240 ~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~ 316 (448)
+|+||||+|||+||||||||++|++.|.|+++||.++. ..+++||||||..+.+ +++ +.+++.+++.|||+.
T Consensus 151 ~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGT~~~~~----~~~-~~~~~~~a~~LG~~~ 225 (454)
T 1q5n_A 151 VMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQ----DQG-SIVVEAYAKQLKLGQ 225 (454)
T ss_dssp EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGT----TCH-HHHHHHHHHHHTCBC
T ss_pred eeeccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHhhcCcccc----ccc-HHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999996 6788899999965543 222 578899999999999
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhH
Q 013159 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 317 ~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
++.++++ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|++++ +|++
T Consensus 226 ~~~~~~~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~---~a~~ 301 (454)
T 1q5n_A 226 TACTWHG-ERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLA---AANR 301 (454)
T ss_dssp CSSCCSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCC-------------CCCHHHHHHHH---HHHH
T ss_pred CCCCCcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCCCccCCCCCCCHHHHHHHH---HHHH
Confidence 8876544 8999999999999999999999999999986 66676644458899999999999999999998 5569
Q ss_pred HHhhhhhhc--cccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 395 DLSFLSMKL--PISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 395 v~g~la~~L--~~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
++|+.+..+ ..++||||++++. ..+++.++. .+.++..+...++|++|
T Consensus 302 v~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 357 (454)
T 1q5n_A 302 VPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAE 357 (454)
T ss_dssp HHHHHHHHHHTTCCCTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHHHHHhccchhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence 999886655 3588999999973 455566666 56677778888888765
No 10
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=5.1e-67 Score=549.05 Aligned_cols=339 Identities=19% Similarity=0.191 Sum_probs=277.3
Q ss_pred cCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHh
Q 013159 83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER 162 (448)
Q Consensus 83 ~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~ 162 (448)
..+|++ ||.+ +++|+.+|||++++++|++||+||+++++ ++|+||++.+++ |.+.++. ...|.+.+.+++.
T Consensus 2 ~~~~~~-ry~~-~~~~~~i~s~~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~---I~~a~~~-~~f~~~~~~~~~~ 72 (450)
T 1re5_A 2 SNQLFD-AYFT-APAMREIFSDRGRLQGMLDFEAALARAEA---SAGLVPHSAVAA---IEAACQA-ERYDTGALANAIA 72 (450)
T ss_dssp -CCTTH-HHHS-CHHHHHHTSHHHHHHHHHHHHHHHHHHHH---TTTSSCHHHHHH---HHHHCCG-GGSCHHHHHHHHH
T ss_pred CCcchh-hccC-CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHH---HHHHHhc-CCCCHHHHHHHHh
Confidence 346777 9997 78999999999999999999999999999 899999644444 5554432 1136788888888
Q ss_pred hhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceee
Q 013159 163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML 242 (448)
Q Consensus 163 ~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~ 242 (448)
+++|||+++++.|++++|.. ++..++|||+||||||+++|+++|++|+++. .+.+.|.+|+++|.++|++|++++|+
T Consensus 73 ~~~~dV~a~~~~l~e~~g~~--~~~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~-~l~~~l~~L~~~L~~~A~~~~~~~~~ 149 (450)
T 1re5_A 73 TAGNSAIPLVKALGKVIATG--VPEAERYVHLGATSQDAMDTGLVLQLRDALD-LIEADLGKLADTLSQQALKHADTPLV 149 (450)
T ss_dssp HHSSSHHHHHHHHHHHHHHH--CGGGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ccCccHHHHHHHHHHHhCCC--CCcccccccCCCChhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCCeee
Confidence 89999999999999999820 0013899999999999999999999999999 49999999999999999999999999
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCC
Q 013159 243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPY 319 (448)
Q Consensus 243 gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~ 319 (448)
||||+|||+||||||||++|++.|.|+++||.++. ..+++||||||..+.. |+ ++.+.+.+++.|||+.++.
T Consensus 150 GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGAvGt~~~~~---~~--~~~~~~~la~~LG~~~~~~ 224 (450)
T 1re5_A 150 GRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFGGASGSLAALG---SK--AMPVAEALAEQLKLTLPEQ 224 (450)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSBCCCCCTTSSCGGGG---GG--HHHHHHHHHHHHTCBCCSS
T ss_pred ccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhcCCcccC---cc--hHHHHHHHHHHhCcCCCCc
Confidence 99999999999999999999999999999999996 5778889999965542 32 4578899999999999887
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHh
Q 013159 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397 (448)
Q Consensus 320 ~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g 397 (448)
+ ++.+||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|+++++++ ++.|
T Consensus 225 ~-~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~---~v~g 300 (450)
T 1re5_A 225 P-WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAAT---RVPG 300 (450)
T ss_dssp C-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEECCCCC----------CCCCHHHHHHHHHHH---HHHH
T ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeecccccCCCccccCCCCcCCHHHHHHHHHHH---HHHH
Confidence 5 6889999999999999999999999999999986 67677655458999999999999999999998554 8888
Q ss_pred hhhhhc--cccccccccccc---hHHHHHhHHH---HHHHHhhcccccccccc
Q 013159 398 FLSMKL--PISRWQVRSNLT---LLLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 398 ~la~~L--~~s~~qRDl~~~---~~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+....+ ...+||||++++ ...+++.+.. ...+...+...++|++|
T Consensus 301 ~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 353 (450)
T 1re5_A 301 LLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAA 353 (450)
T ss_dssp HHHHHHHTCCCCTTBCSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHHHHHhChhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 764433 136899999985 3556666555 56677778888888765
No 11
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=8.7e-67 Score=544.33 Aligned_cols=323 Identities=23% Similarity=0.270 Sum_probs=277.6
Q ss_pred ccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHhhhCCcH
Q 013159 89 GRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDV 168 (448)
Q Consensus 89 gry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~~t~hDv 168 (448)
+||.+ ++|+.+|||++++++|++||+||+++++ ++|+||++.+++|. +.+ +| |.+.+.+++.+++|||
T Consensus 2 ~ry~~--~~~~~~~sd~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~---~a~-~~---d~~~i~~~~~~~~~dV 69 (429)
T 1c3c_A 2 ERYSL--SPMKDLWTEEAKYRRWLEVELAVTRAYE---ELGMIPKGVTERIR---NNA-KI---DVELFKKIEEKTNHDV 69 (429)
T ss_dssp GGGCC--TTHHHHTSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHHH---HHC-CC---CHHHHHHHHHHHCCHH
T ss_pred CCccc--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHH---HhC-CC---CHHHHHHHHhccCCCh
Confidence 48986 7999999999999999999999999999 89999987777763 333 44 6788888888899999
Q ss_pred hHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013159 169 KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 169 ~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
+++|++|.+++|+ .++|||+|+||||+++|+++|++|+++. .+.+.|.+|+++|.++|++|++++|+||||+|
T Consensus 70 ia~~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ 142 (429)
T 1c3c_A 70 VAFVEGIGSMIGE------DSRFFHYGLTSSDVLDTANSLALVEAGK-ILLESLKEFCDVLWEVANRYKHTPTIGRTHGV 142 (429)
T ss_dssp HHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCEEEEEETTE
T ss_pred HHHHHHHHHHcCc------ccccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeeecCcCCC
Confidence 9999999999985 5899999999999999999999999999 49999999999999999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCCC-cccc
Q 013159 249 PASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-TQIE 324 (448)
Q Consensus 249 ~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~-~qi~ 324 (448)
||+||||||||++|++.|.|+++||.++. ..+++||||||.... | +.+++.+++.|||+.++.+ +++
T Consensus 143 ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~~~- 213 (429)
T 1c3c_A 143 HAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANV----P----PEVEEKALSYLGLKPEPVSTQVV- 213 (429)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCSSS----C----HHHHHHHHHHTTCEECSSCSSSC-
T ss_pred cCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhcCCccC----C----HHHHHHHHHHcCCCCCCCCcCcc-
Confidence 99999999999999999999999999996 577888999995432 2 3588999999999988776 554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhhh
Q 013159 325 THDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK 402 (448)
Q Consensus 325 ~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~~ 402 (448)
+||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|+++++++ ++.|+....
T Consensus 214 ~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~---~v~g~~~~~ 290 (429)
T 1c3c_A 214 PRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSR---MMRAYVDPS 290 (429)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCC-----CCCTTCCCCHHHHHHHHHHH---HHHHTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccccCCCcCCCCCCCCCcHHHHHHHHHHH---HHHHHHHHH
Confidence 9999999999999999999999999999986 77777755558999999999999999999998554 888876433
Q ss_pred c--cccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 403 L--PISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 403 L--~~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+ ..++||||++++. ..+++.+.. ...++..+...++|++|
T Consensus 291 ~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e 338 (429)
T 1c3c_A 291 LENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEE 338 (429)
T ss_dssp HHTTCCSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HhcCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHCcCeeCHH
Confidence 3 1488999999974 455666666 56677778888888765
No 12
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=1.7e-66 Score=530.92 Aligned_cols=332 Identities=18% Similarity=0.158 Sum_probs=271.5
Q ss_pred CCCCcc-CCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHhh
Q 013159 85 SPLDGR-YWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERV 163 (448)
Q Consensus 85 sp~dgr-y~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~~ 163 (448)
+|+-+| |. .++|+.+|||++++++|++||+||+++++ ++|+||++ +.+.|.+.++++. .|.+.+.+.+..
T Consensus 8 ~~l~~~~~~--~~~m~~~fs~~~~i~~~~~ve~A~a~a~~---~~G~i~~~---~a~~I~~~~~~i~-~~~~~~~~~~~~ 78 (359)
T 2fel_A 8 HPFLSGLFG--DSEIIELFSAKADIDAMIRFETALAQAEA---EASIFADD---EAEAIVSGLSEFA-ADMSALRHGVAK 78 (359)
T ss_dssp CTTTHHHHC--CHHHHGGGSHHHHHHHHHHHHHHHHHHHH---HTTSSCHH---HHHHHHHHHHTCC-CCHHHHHHHHHH
T ss_pred ccccccccC--CHHHHHHcCcHHHHHHHHHHHHHHHHHHH---HCCCCCHH---HHHHHHHHHHhcc-ccHHHHHhhccc
Confidence 455555 55 36899999999999999999999999999 89999964 4444555556554 367778788888
Q ss_pred hCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeec
Q 013159 164 TNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS 243 (448)
Q Consensus 164 t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~g 243 (448)
.+|++.+++..|.+++|. +.++|||+|+|||||+||+++|++|+++. .+.+.|.+++++|.++|++|++++|+|
T Consensus 79 ~~~~~~~~~~~l~~~~g~-----~~~~~vH~G~SsnDv~~Ta~~l~lr~~l~-~l~~~L~~l~~~L~~~A~~~~~~~~~G 152 (359)
T 2fel_A 79 DGVVVPELIRQMRAAVAG-----QAADKVHFGATSQDVIDTSLMLRLKMAAE-IIATRLGHLIDTLGDLASRDGHKPLTG 152 (359)
T ss_dssp HSSSHHHHHHHHHTTSCG-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcHHHHHHHHHHHcCc-----cccchhcCCCCHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcEeec
Confidence 999999999999998874 47999999999999999999999999999 599999999999999999999999999
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCCC
Q 013159 244 RTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV 320 (448)
Q Consensus 244 RTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~ 320 (448)
|||+|||+||||||+|++|+++|.|+++||.++. ..+++||||||+++++ .+|+.+++.+++.|||+.++
T Consensus 153 rTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgavGT~~~~~-----~~~~~~~~~~a~~LG~~~~~-- 225 (359)
T 2fel_A 153 YTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLG-----DNAGAVRADLAKRLGLADRP-- 225 (359)
T ss_dssp EETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSBCCCCCTTSSCTTTG-----GGHHHHHHHHHHHHTCBCCC--
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHhccCccCc-----chHHHHHHHHHHHhCcCCCc--
Confidence 9999999999999999999999999999999996 6788899999977553 25678999999999999887
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-ceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhh
Q 013159 321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLA-YFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399 (448)
Q Consensus 321 ~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g-~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~l 399 (448)
+++.+||++++++++++.++++|+|||+||++|++.+ ++.+ .+++|||||||||||+.+|++++ +|+.+.|++
T Consensus 226 ~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s~e~Ei~~---~~~~GSS~MP~K~NP~~~E~i~~---~a~~v~~~~ 299 (359)
T 2fel_A 226 QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEIRL---SGGGGSSAMPHKQNPVNAETLVT---LARFNAVQI 299 (359)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE---C------------CCHHHHHHHH---HHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecC---CCCCCCccCCcccCCHHHHHHHH---HHHHHHHHH
Confidence 3677899999999999999999999999999998765 5544 45699999999999999999988 555888877
Q ss_pred hhhcc--ccccccccccchH---HHHHhHHH---HHHHHhhcccccccccccc
Q 013159 400 SMKLP--ISRWQVRSNLTLL---LIFFNFDL---WLCLLRQVPWYLKFKSDLE 444 (448)
Q Consensus 400 a~~L~--~s~~qRDl~~~~~---~~~~~~~~---~~~ll~~~~~~~~~~~~~~ 444 (448)
...+. ..++|||++.|.. .+++++.. .+.++..+...++|+.|--
T Consensus 300 ~~~~~~~~~~~er~~~~~~~e~~~lp~~~~~~~~~L~~~~~v~~~l~v~~~~m 352 (359)
T 2fel_A 300 SALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADE 352 (359)
T ss_dssp HHHHHTTCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECC--
T ss_pred HHHHHHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHh
Confidence 65542 3567999997763 35555555 6778888888888887743
No 13
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=5e-66 Score=540.69 Aligned_cols=325 Identities=22% Similarity=0.294 Sum_probs=281.6
Q ss_pred CccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHhhhCCc
Q 013159 88 DGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167 (448)
Q Consensus 88 dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~~t~hD 167 (448)
-+||.. ++|+.+|||++++++|++||+||+++++ ++|+||++.+++ |.+.+ +| |.+.+.+++.+++||
T Consensus 11 ~~~~~~--~~~~~i~sd~~~i~~~~~v~~A~a~a~~---~~G~i~~~~a~~---I~~a~-~~---d~~~i~~~~~~~~~d 78 (444)
T 2pfm_A 11 ISRYTR--PEMGAIWTEENKFKAWLEVEILACEAWA---ELGDIPKEDVKK---IREHA-SF---DIDRIYEIEKETRHD 78 (444)
T ss_dssp CCTTCC--HHHHHHTSHHHHHHHHHHHHHHHHHHHH---HHTSSCHHHHHH---HHHHC-CC---CHHHHHHHHHHHCCH
T ss_pred HHhcch--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHH---HHHhC-CC---CHHHHHHHhccCCCC
Confidence 459985 8999999999999999999999999999 899999755555 44444 44 678888888999999
Q ss_pred HhHHHHHHHHHhc-cCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeecccc
Q 013159 168 VKAVEYFLKQKCQ-SQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246 (448)
Q Consensus 168 v~a~e~~L~~~~g-~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH 246 (448)
|+++|++|.+++| . +.++|||+|||||||++|+++|++|+++. .+.+.|.+|+++|.++|++|++++|+||||
T Consensus 79 Via~~~~l~e~~g~g-----~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~-~l~~~l~~L~~~L~~~A~~~~~~~~~GrTH 152 (444)
T 2pfm_A 79 VVAFTRAVSETPALG-----EERKWVHYGLTSTDVVDTALSYILKQANE-IILKDLENFVSILANKAKEHKYTIMMGRTH 152 (444)
T ss_dssp HHHHHHHHHTCTTCC-----GGGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred HHHHHHHHHHHcCCC-----cccccccCCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeeecccC
Confidence 9999999999995 3 37899999999999999999999999999 499999999999999999999999999999
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCCC-cc
Q 013159 247 GQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-TQ 322 (448)
Q Consensus 247 ~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~-~q 322 (448)
+|||+||||||||++|++.|.|+++||.++. ..+++||||||.... | +.+++.+++.|||+.++.+ ++
T Consensus 153 lQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgAvGt~~~~----~----~~~~~~~a~~LGl~~~~~~d~~ 224 (444)
T 2pfm_A 153 GVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVGTYANI----D----PFVEKYVCENLGLEAAPISTQT 224 (444)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCCTTSSCTTS----C----HHHHHHHHHHTTCEECSSCSSS
T ss_pred CccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhhccCCcC----C----HHHHHHHHHHhCCCCCCCCcCc
Confidence 9999999999999999999999999999996 577888999995432 3 3588999999999988776 55
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhh
Q 013159 323 IETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLS 400 (448)
Q Consensus 323 i~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la 400 (448)
+ +||++++++++++.++++|+|||+||++|++ +|++.++..++++||||||||+||+.+|+++++++ ++.|+..
T Consensus 225 ~-~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p~~~~q~GSSiMP~K~NP~~~E~i~~~a~---~v~g~~~ 300 (444)
T 2pfm_A 225 L-QRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKGSSAMPHKRNPIGSENMTGLAR---VIRGYMM 300 (444)
T ss_dssp C-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECCCCTTCCSCSSCTTCCCCHHHHHHHHHHH---HHHHHHH
T ss_pred c-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcCccCCcccCCHHHHHHHHHHH---HHHHHHH
Confidence 4 8999999999999999999999999999986 77777755558999999999999999999998554 8888764
Q ss_pred hhc--cccccccccccch---HHHHHhHHH---HHHHHhhcccccccccc
Q 013159 401 MKL--PISRWQVRSNLTL---LLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 401 ~~L--~~s~~qRDl~~~~---~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
..+ ..++||||++++. ..+++.++. ...++..+...++|++|
T Consensus 301 ~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e 350 (444)
T 2pfm_A 301 TAYENVPLWHERDISHSSAERVILPDATIALNYMLNRFGNIVKNLTVYPE 350 (444)
T ss_dssp HHHHTSCCCTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECHH
T ss_pred HHHHhCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 333 1488999999974 456566666 56677788888888765
No 14
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=1.6e-63 Score=524.75 Aligned_cols=325 Identities=18% Similarity=0.190 Sum_probs=267.8
Q ss_pred CCCCccCCCCccchHHhcc-----cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHH
Q 013159 85 SPLDGRYWSKVKDLAPYMS-----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 85 sp~dgry~~~~~el~~ifS-----e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~ 159 (448)
.+|++||.+.+..+...|+ |..++++|+.||+||+++++ ++|+||++.+++| .+.++++. +++.+
T Consensus 9 ~~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~~ 78 (468)
T 1k7w_A 9 KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALE---KAGILTKTELEKI---LSGLEKIS----EEWSK 78 (468)
T ss_dssp ----------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHHH
T ss_pred cccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhhhc
Confidence 4799999998888999999 99999999999999999999 8999997555554 44444431 22222
Q ss_pred HH---hhhCCcH-hHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 160 IE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKD 235 (448)
Q Consensus 160 ~e---~~t~hDv-~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~ 235 (448)
.+ ..++||+ +++|+++.+++|+ .++|||+|+|||||++|+++|++|+++. .+.+.|.+|+++|.++|++
T Consensus 79 ~~f~~~~~~~dv~m~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~-~l~~~L~~L~~~L~~~A~~ 151 (468)
T 1k7w_A 79 GVFVVKQSDEDIHTANERRLKELIGD------IAGKLHTGRSRNDQVVTDLKLFMKNSLS-IISTHLLQLIKTLVERAAI 151 (468)
T ss_dssp TCCCCCTTCCSHHHHHHHHHHHHHCG------GGGGGGTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCccCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 22 3579999 7999999999985 6899999999999999999999999999 4999999999999999999
Q ss_pred cccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhccccc--ccccccccccCCCCChhhhHHHHHH
Q 013159 236 NANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFVK 310 (448)
Q Consensus 236 ~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGA--vGT~~a~~~~~p~~d~~~v~~~la~ 310 (448)
|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +||. +| + .++.+++
T Consensus 152 ~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~----~~~~la~ 220 (468)
T 1k7w_A 152 EIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNP------LD-I----DREMLRS 220 (468)
T ss_dssp TTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEECTTCTTTTCCT------TC-C----CHHHHHH
T ss_pred ccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCC------CC-C----ChHHHHH
Confidence 999999999999999999999999999999999999999986 45666666 4772 22 2 2677999
Q ss_pred HcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhh
Q 013159 311 SLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSE 386 (448)
Q Consensus 311 ~LGL~~~~~~~--qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~ 386 (448)
.|||+.++.++ |+.+||++++++++++.++++|+|||+||++|++ +|++++ ++...+||||||||+||+.+|+++
T Consensus 221 ~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i~ 299 (468)
T 1k7w_A 221 ELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTL-SDAFSTGASLMPQKKNPDSLELIR 299 (468)
T ss_dssp HHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEEETTEEEEEECHHHHHHH
T ss_pred HcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHHH
Confidence 99999655443 7889999999999999999999999999999987 888876 444457999999999999999999
Q ss_pred hhhhhhhHHHhhhhhh------ccccccccccccchHHHHHhHHH---HHHHHhhcccccccccc
Q 013159 387 GNLGKANEDLSFLSMK------LPISRWQVRSNLTLLLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 387 g~~~la~~v~g~la~~------L~~s~~qRDl~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
++++ ++.|+.... +| ..|+||+++++..+++.++. .+.++..+...++|++|
T Consensus 300 ~~a~---~v~g~~~~~~~~~~~~p-~~~~rDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e 360 (468)
T 1k7w_A 300 SKAG---RVFGRLASILMVLKGLP-STYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKE 360 (468)
T ss_dssp HHHH---HHHHHHHHHHHHHTTCC-SSCCGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred HHHH---HHHHHHHHHHHHHhCCc-hHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHhCCCEECHH
Confidence 8554 888876433 45 68999999999999999988 56677777888888765
No 15
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=2.6e-62 Score=514.27 Aligned_cols=325 Identities=19% Similarity=0.194 Sum_probs=275.8
Q ss_pred CCCCccCCCCccchHHhccc-----chhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHH
Q 013159 85 SPLDGRYWSKVKDLAPYMSE-----YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKN 159 (448)
Q Consensus 85 sp~dgry~~~~~el~~ifSe-----~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~ 159 (448)
..|+|||..++.+....|++ ..++++++.+++||+++++ ++|+||++.+++| .+.++++. +++.+
T Consensus 2 ~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~~ 71 (457)
T 1tj7_A 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALV---TVGVLTAEEQAQL---EEALNVLL----EDVRA 71 (457)
T ss_dssp -CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHHH
T ss_pred cccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhHhc
Confidence 36999999988999999985 8899999999999999999 8999997555554 44444441 23344
Q ss_pred HHh----hhCCcHh-HHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 160 IER----VTNHDVK-AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (448)
Q Consensus 160 ~e~----~t~hDv~-a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~ 234 (448)
.+. .++||+. ++|+++.+++|+ .++|||+|+||||+++|+++|++|+++. .+.+.|.+|+++|.++|+
T Consensus 72 ~~~~~~~~~~~dv~~~v~~~l~e~~g~------~g~~vH~g~SsnD~~~Ta~~l~lr~~l~-~l~~~l~~l~~~L~~~A~ 144 (457)
T 1tj7_A 72 RPQQILESDAEDIHSWVEGKLIDKVGQ------LGKKLHTGRSRNDQVATDLKLWCKDTVS-ELLTANRQLQSALVETAQ 144 (457)
T ss_dssp CGGGGGGSCCSSHHHHHHHHHHHHHGG------GGGGTTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCcCcCCCCCCcHHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444 3499994 899999999985 6899999999999999999999999999 499999999999999999
Q ss_pred HcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhccccc--ccccccccccCCCCChhhhHHHHH
Q 013159 235 DNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITEDFV 309 (448)
Q Consensus 235 ~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGA--vGT~~a~~~~~p~~d~~~v~~~la 309 (448)
+|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +||. +.+| ++.++
T Consensus 145 ~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~-------~~~~----~~~la 213 (457)
T 1tj7_A 145 NNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTA-------YEID----REQLA 213 (457)
T ss_dssp TTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCS-------SCCC----HHHHH
T ss_pred HccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccCCCC-------CCCC----HHHHH
Confidence 9999999999999999999999999999999999999999986 45666666 4772 2233 57799
Q ss_pred HHcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHh
Q 013159 310 KSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385 (448)
Q Consensus 310 ~~LGL~~~~~~~--qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~ 385 (448)
+.|||+.++.++ |+.+||++++++++++.++++|+|||+||++|++ +|++++ ++...+||||||||+||+.+|++
T Consensus 214 ~~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E~i 292 (457)
T 1tj7_A 214 GWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVEL-SDRVTSGSSLMPQKKNPDALELI 292 (457)
T ss_dssp HHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCBCCTTCTTCCBCHHHHHH
T ss_pred HHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceec-cCCCCCCCCCCCCCCCcHHHHHH
Confidence 999999765543 7889999999999999999999999999999987 888876 44445899999999999999999
Q ss_pred hhhhhhhhHHHhhhhhh------ccccccccccccchHHHHHhHHH---HHHHHhhcccccccccc
Q 013159 386 EGNLGKANEDLSFLSMK------LPISRWQVRSNLTLLLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 386 ~g~~~la~~v~g~la~~------L~~s~~qRDl~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+++++ ++.|+.... +| ..|+||+++.+..+++.++. .+.++..+...++|++|
T Consensus 293 ~~~a~---~v~g~~~~~~~~~~~~p-~~~~RDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~~ 354 (457)
T 1tj7_A 293 RGKCG---RVQGALTGMMMTLKGLP-LAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRP 354 (457)
T ss_dssp HHTHH---HHHHHHHHHHHHHTTCC-SSCCGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTCEECHH
T ss_pred HHHHH---HHHHHHHHHHHHHhcCc-HHhhcchhhHHhHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 98555 888876433 45 68999999999999999988 56677778888888876
No 16
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-62 Score=513.71 Aligned_cols=326 Identities=19% Similarity=0.150 Sum_probs=267.6
Q ss_pred CCCCCccCCCCccchHHhccc-----chhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHH
Q 013159 84 LSPLDGRYWSKVKDLAPYMSE-----YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVK 158 (448)
Q Consensus 84 ~sp~dgry~~~~~el~~ifSe-----~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~ 158 (448)
-..|++||...+......|+. ..++++++.+|+||+++++ ++|+||++.+++| .+.++++. +.+.
T Consensus 3 ~~~~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~---~~Gii~~~~a~~I---~~a~~~i~----~~~~ 72 (462)
T 2e9f_A 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLH---AVGLLSAEELEAI---LKGLDRIE----EEIE 72 (462)
T ss_dssp -----------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHH---HTTSSCHHHHHHH---HHHHHHHH----HHHH
T ss_pred ccccCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHH---HHHHHHHH----hhHh
Confidence 357999999888889999986 7899999999999999999 8999997555554 44444432 2222
Q ss_pred HHH---hhhCCcH-hHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 159 NIE---RVTNHDV-KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAK 234 (448)
Q Consensus 159 ~~e---~~t~hDv-~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~ 234 (448)
+.+ ..++||+ +++|+++.+++|+ .++|||+|+||||+++|+++|++|+++. .+.+.|.+|+++|.++|+
T Consensus 73 ~~~f~~~~~~~dv~~~~~~~l~e~~g~------~g~~vH~g~SsnDv~~Ta~~l~lr~~l~-~l~~~l~~L~~~L~~~A~ 145 (462)
T 2e9f_A 73 AGTFPWREELEDVHMNLEARLTELVGP------PGGKLHTARSRNDQVATDLRLYLRGAID-ELLALLLALRRVLVREAE 145 (462)
T ss_dssp HTCSCCCGGGCSHHHHHHHHHHHHHCT------THHHHTTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCchHHHHHHHHHHHccc------cccceecCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 222 3579999 9999999999985 6899999999999999999999999999 599999999999999999
Q ss_pred Hcccc--eeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhccccc--ccccccccccCCCCChhhhHHH
Q 013159 235 DNANI--SMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGA--VGNYNAHLSAYPDVNWPQITED 307 (448)
Q Consensus 235 ~~~dt--~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gGA--vGT~~a~~~~~p~~d~~~v~~~ 307 (448)
+|+++ +|+||||+|||+||||||||++|++.|.|+++||.++. ..+++||+ +||. +| + .++.
T Consensus 146 ~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGgaA~aGt~------~~-~----~~~~ 214 (462)
T 2e9f_A 146 KHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGAAALAGTG------FP-I----DRHF 214 (462)
T ss_dssp HTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCEECTTCCSSSCCS------SC-C----CHHH
T ss_pred HccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccCC------CC-C----CHHH
Confidence 99999 99999999999999999999999999999999999986 45667766 4772 22 2 2677
Q ss_pred HHHHcCCCCCCCCc--cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHH
Q 013159 308 FVKSLGLSFNPYVT--QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFE 383 (448)
Q Consensus 308 la~~LGL~~~~~~~--qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E 383 (448)
+++.|||+.++.++ |+.+||++++++++++.++++|+|||+||++|++ +|++++ ++...+||||||||+||+.+|
T Consensus 215 ~a~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~e~g~iel-~e~~~~GSSiMP~K~NP~~~E 293 (462)
T 2e9f_A 215 TARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEV-PDAFATGSSIMPQKKNPDILE 293 (462)
T ss_dssp HHHHTTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCEEC-CGGGCEECSSSSSCEECHHHH
T ss_pred HHHHhCCCCCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEe-cCCCCCCCCCCCCCcCCHHHH
Confidence 99999999765543 7889999999999999999999999999999987 888876 444457999999999999999
Q ss_pred HhhhhhhhhhHHHhhhhhh------ccccccccccccchHHHHHhHHH---HHHHHhhcccccccccc
Q 013159 384 NSEGNLGKANEDLSFLSMK------LPISRWQVRSNLTLLLIFFNFDL---WLCLLRQVPWYLKFKSD 442 (448)
Q Consensus 384 ~~~g~~~la~~v~g~la~~------L~~s~~qRDl~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~ 442 (448)
+++++++ ++.|+.... +| +.|+||+++++..+++.++. .+.++..+...++|++|
T Consensus 294 ~i~~~a~---~v~g~~~~~~~~~~~~p-~~~~rDl~~~~~~l~~s~~~~~~~l~~~~~~l~gl~vn~e 357 (462)
T 2e9f_A 294 LIRAKAG---RVLGAFVGLSAVVKGLP-LAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRE 357 (462)
T ss_dssp HHHHTHH---HHHHHHHHHHHHHTTCC-SSBCGGGGGGHHHHHHHHHHHHHHHHHHHHHGGGCEECHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHhCCc-hHhhhchhhhHhHHHHHHHHHHHHHHHHHHHhCcCEECHH
Confidence 9998555 888876433 45 78999999999999999987 66677778888888876
No 17
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=1.8e-58 Score=487.43 Aligned_cols=326 Identities=17% Similarity=0.136 Sum_probs=254.5
Q ss_pred CCCCccCCCCccchHHhcc--------cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHh
Q 013159 85 SPLDGRYWSKVKDLAPYMS--------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALE 156 (448)
Q Consensus 85 sp~dgry~~~~~el~~ifS--------e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~ 156 (448)
-|.|.+|+..+......|+ +++++++|++||+||+++++ ++|+||++.+++|. +.++ +
T Consensus 17 vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~---~~Gii~~~~a~~I~---~a~~--------~ 82 (478)
T 1jsw_A 17 VPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANK---ELQTIPKSVANAII---AACD--------E 82 (478)
T ss_dssp EESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHH---HHHH--------H
T ss_pred CCCccccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHH---HHHH--------H
Confidence 3667777666777777776 68899999999999999999 89999976655543 3222 2
Q ss_pred HH-HHHhhhCCcH------------hHHH----HHHHHHhccCcchhhccC--------ccccCCChhhHHHHHHHHHHH
Q 013159 157 VK-NIERVTNHDV------------KAVE----YFLKQKCQSQPEIAKVLE--------FFHFACTSEDINNLAHALMLK 211 (448)
Q Consensus 157 l~-~~e~~t~hDv------------~a~e----~~L~~~~g~~~~l~~~~~--------~vH~G~TsnDi~dTa~~L~lr 211 (448)
|. +++..+++++ +.++ +.+.+++|. +.++ |||+|||||||++|+++|++|
T Consensus 83 i~~~~~~~~~f~v~~~~~g~~~~~~mnv~~vIa~~~~e~~g~-----~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr 157 (478)
T 1jsw_A 83 VLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGH-----QKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVY 157 (478)
T ss_dssp HSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTS-----CCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHH
T ss_pred HHhcchhccCCccchhhccCcccccccHHHHHHHHHHHHcCc-----cccccccccccccccCCCChhhHHHHHHHHHHH
Confidence 22 2233333333 3344 466788874 1333 455999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-ccc
Q 013159 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVG 287 (448)
Q Consensus 212 ~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvG 287 (448)
+++. .+.+.|.+|+++|.++|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||
T Consensus 158 ~~l~-~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~~~~lGg~AvG 236 (478)
T 1jsw_A 158 SSLI-KLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIG 236 (478)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSS
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 9997 5999999999999999999999999999999999999999999999999999999999986 5667777 889
Q ss_pred cc-ccccccCCCCChhhhHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccc
Q 013159 288 NY-NAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYI-----SLAY 358 (448)
Q Consensus 288 T~-~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~~---qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~-----s~g~ 358 (448)
|. +.+ |+++ +.+.+++++.|||+.++..+ ++.+||++++++++++.++++|+|||+||++|+ ++|+
T Consensus 237 T~~~~~----~~~~-~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~pr~e~ge 311 (478)
T 1jsw_A 237 TGLNTP----KEYS-PLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNE 311 (478)
T ss_dssp SCSSCT----TTHH-HHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCC
T ss_pred CCccCC----cchH-HHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCcee
Confidence 94 332 3222 46788899999999754433 689999999999999999999999999999998 4788
Q ss_pred eeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhhhc---cccccccccccchHH----HHHhHHH---HHH
Q 013159 359 FKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL---PISRWQVRSNLTLLL----IFFNFDL---WLC 428 (448)
Q Consensus 359 ~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~~L---~~s~~qRDl~~~~~~----~~~~~~~---~~~ 428 (448)
+.+ +.+++||||||||+||+.+|++++++ +++.|+....+ ..+.+|++ .+.|. +++.+.. .+.
T Consensus 312 i~l--p~~~~GSSiMP~K~NP~~~E~i~~~a---~~v~g~~~~~~~~~~~~~~e~~--~~~p~~~~~l~~s~~~l~~~l~ 384 (478)
T 1jsw_A 312 INL--PELQAGSSIMPAKVNPVVPEVVNQVC---FKVIGNDTTVTMAAEAGQLQLN--VMEPVIGQAMFESVHILTNACY 384 (478)
T ss_dssp EEC--CCCSCCCSSCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHTCBTTBC--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEC--CCCCCCCCCCCcccCCHHHHHHHHHH---HHHHhHHHHHHHHHhccchhhc--ccchHHHHHHHHHHHHHHHHHH
Confidence 886 34899999999999999999999855 49998775443 23455665 45564 3444444 344
Q ss_pred HHh-hcccccccccc
Q 013159 429 LLR-QVPWYLKFKSD 442 (448)
Q Consensus 429 ll~-~~~~~~~~~~~ 442 (448)
.+. .+...++|++|
T Consensus 385 ~~~~~~l~gl~vn~e 399 (478)
T 1jsw_A 385 NLLEKCINGITANKE 399 (478)
T ss_dssp HHHHHTGGGCEECHH
T ss_pred HHHHHHHccCeecHH
Confidence 454 47778888765
No 18
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=3.5e-57 Score=476.30 Aligned_cols=329 Identities=19% Similarity=0.134 Sum_probs=250.0
Q ss_pred CccchHHhcc------cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHccCCcccHHhHHHHHhh-hC
Q 013159 94 KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMDDALEVKNIERV-TN 165 (448)
Q Consensus 94 ~~~el~~ifS------e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~~~~~~d~~~l~~~e~~-t~ 165 (448)
.+......|. +.+++++|++||+||+++++ ++|+||++.+++|.+.+. +.+... +.....+.... .+
T Consensus 25 ~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~--~~~f~~~~~q~g~~ 99 (467)
T 1fur_A 25 QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNE---DLGLLSEEKASAIRQAADEVLAGQH--DDEFPLAIWQTGSG 99 (467)
T ss_dssp HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTTT--GGGCCCBSSSCTTC
T ss_pred hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhccc--cccccchhhhcccc
Confidence 3445555565 78899999999999999999 899999876666643222 211110 11111111111 22
Q ss_pred CcH-hHHHHHH----HHHhccCcchhhccCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 166 HDV-KAVEYFL----KQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEI 232 (448)
Q Consensus 166 hDv-~a~e~~L----~~~~g~~~~l~~~~~~--vH------~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~l 232 (448)
.|+ +.++..| .+++|. +.++| +| +||||||+++|+++|++|+++...+.+.|.+|+++|.++
T Consensus 100 ~~~~mn~~~via~~a~e~~G~-----~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~ 174 (467)
T 1fur_A 100 TQSNMNMNEVLANRASELLGG-----VRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEK 174 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-----CSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCc-----ccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4444444 788873 24555 55 999999999999999999999833999999999999999
Q ss_pred HHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-cccccccCCCCChhhhHHH
Q 013159 233 AKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITED 307 (448)
Q Consensus 233 A~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~~~~p~~d~~~v~~~ 307 (448)
|++|++++|+||||+|||+||||||||++|++.|.|+++||.++. ..+++|| |||| ++.+ |++ -+.+.+.
T Consensus 175 A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l~~~~lGgtAvGT~~~~~----~~~-~~~v~~~ 249 (467)
T 1fur_A 175 SRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTH----PEY-ARRVADE 249 (467)
T ss_dssp HHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTH-HHHHHHH
T ss_pred HHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhcCCccCC----hhH-HHHHHHH
Confidence 999999999999999999999999999999999999999999985 4555665 8999 4432 221 1467888
Q ss_pred HHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccceeeecCCCCcccCCCCCCcCc
Q 013159 308 FVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNP 379 (448)
Q Consensus 308 la~~LGL~~~~~~~---qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~~~~~~~~~~~GSS~MPhKrNP 379 (448)
+++.|||+..++.+ ++.+||++++++++++.++++|+|||+||++|+| +|++++ +.+++||||||||+||
T Consensus 250 la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~l--p~~~~GSSiMP~K~NP 327 (467)
T 1fur_A 250 LAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISI--PENEPGSSIMPGKVNP 327 (467)
T ss_dssp HHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSEEC--CCCSCCCTTCTTCCCC
T ss_pred HHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeEEC--CCCCCCCCCCCcccCC
Confidence 99999999866543 5789999999999999999999999999999985 677665 5678999999999999
Q ss_pred hHHHHhhhhhhhhhHHHhhhhhhcc-ccccccccccchHH----HHHhHHH---HHHHH-hhcccccccccc
Q 013159 380 IDFENSEGNLGKANEDLSFLSMKLP-ISRWQVRSNLTLLL----IFFNFDL---WLCLL-RQVPWYLKFKSD 442 (448)
Q Consensus 380 v~~E~~~g~~~la~~v~g~la~~L~-~s~~qRDl~~~~~~----~~~~~~~---~~~ll-~~~~~~~~~~~~ 442 (448)
+.+|++++ +|++++|+....+. ...++.|++.+.+. +++.++. .+..+ ..+...++|++|
T Consensus 328 ~~~E~i~~---~a~~v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 396 (467)
T 1fur_A 328 TQCEALTM---LCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRE 396 (467)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHH
Confidence 99999998 45599998865553 34466777777774 4455444 33344 447777788765
No 19
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=3.8e-57 Score=475.97 Aligned_cols=317 Identities=21% Similarity=0.197 Sum_probs=243.4
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHccCCcc--cHHhHHHHHhhh-----CCcHhHHHHHH
Q 013159 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMD--DALEVKNIERVT-----NHDVKAVEYFL 175 (448)
Q Consensus 104 e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~~~~~~--d~~~l~~~e~~t-----~hDv~a~e~~L 175 (448)
+.+++++|++||+||+++++ ++|+||++.+++|..-+. +.+..... +.+. .+....+ .|+|++.. .
T Consensus 42 ~~~~i~~~~~v~~A~a~a~~---~~Gii~~~~a~~I~~a~~~i~~~~~~~~f~~~~-~q~~~~~~~~mn~~~via~~--a 115 (466)
T 1vdk_A 42 PLEIIRAYGMLKKAAARANL---ELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVV-FQTGSGTQTNMNVNEVIANR--A 115 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTTTGGGCCCBS-SSCTTCHHHHHHHHHHHHHH--H
T ss_pred cHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCchh-hhccccccccccHHHHHHHH--H
Confidence 57789999999999999999 899999866666643221 21111000 1111 0111111 24555544 2
Q ss_pred HHHhccCcchhhcc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013159 176 KQKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 176 ~~~~g~~~~l~~~~-~~vH------~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.+++|. +.+ ++|| +|+||||+++|+++|++|+++. . +.+.|.+|+++|.++|++|++++|+||||+
T Consensus 116 ~e~~g~-----~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~-l~~~l~~L~~~L~~~A~~~~~~~~~GrTHl 189 (466)
T 1vdk_A 116 SEILGK-----PLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQR-LYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 189 (466)
T ss_dssp HHHTTC-----CTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhCc-----cccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 778874 244 5666 9999999999999999999997 6 999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-cccccccCCCCChhhhHHHHHHHcCCCCCCCC--
Q 013159 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-- 320 (448)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~-- 320 (448)
|+|+||||||||++|++.|.|+++||.++. ..+++|| |||| ++.+ |++ -+.+.+++++.|||+.++..
T Consensus 190 Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~----~~~-~~~v~~~la~~LG~~~~~~~n~ 264 (466)
T 1vdk_A 190 MDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAH----PRF-GELVAKYLAEETGLPFRVAENR 264 (466)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSC----TTH-HHHHHHHHHHHHSSCCEECSCT
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCccCC----chH-HHHHHHHHHHHcCCCCCCCcch
Confidence 999999999999999999999999999985 4556666 8999 4332 221 14678899999999974433
Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhH
Q 013159 321 -TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 321 -~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
+++.+||++++++++++.++++|+|||+||++|+| +|++++ +.+++|||||||||||+.+|++++ +|++
T Consensus 265 ~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei~l--p~~~~GSSiMP~K~NP~~~E~i~~---~a~~ 339 (466)
T 1vdk_A 265 FAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITI--PANEPGSSIMPGKVNPTQVEALTM---VVVR 339 (466)
T ss_dssp THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEEC--CCCSCCSSCCTTCCCCHHHHHHHH---HHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEC--CCCCCcCCCCCCCCCcHHHHHHHH---HHHH
Confidence 36789999999999999999999999999999984 777765 557899999999999999999998 5559
Q ss_pred HHhhhhhhcc-ccccccccccchHHHH----HhHHH---HHHHH-hhcccccccccc
Q 013159 395 DLSFLSMKLP-ISRWQVRSNLTLLLIF----FNFDL---WLCLL-RQVPWYLKFKSD 442 (448)
Q Consensus 395 v~g~la~~L~-~s~~qRDl~~~~~~~~----~~~~~---~~~ll-~~~~~~~~~~~~ 442 (448)
+.|+....+. ...++.+++.+++.++ +.++. .+.++ ..+...++|++|
T Consensus 340 v~g~~~~~~~~~~~g~~e~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 396 (466)
T 1vdk_A 340 VYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLE 396 (466)
T ss_dssp HHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred HHhHHHHHHHHHHccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHH
Confidence 9998765543 4456777888888544 44433 33444 347777777765
No 20
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=1.7e-56 Score=472.82 Aligned_cols=317 Identities=20% Similarity=0.147 Sum_probs=237.3
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHcc-CCc-ccHHhHHHHHhhh-----CCcHhHHHHHH
Q 013159 104 EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDG-FNM-DDALEVKNIERVT-----NHDVKAVEYFL 175 (448)
Q Consensus 104 e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~~-~~~-~d~~~l~~~e~~t-----~hDv~a~e~~L 175 (448)
+..++++|++||+||+++++ ++|+||++.+++|...+. +.+. +.. .+.+. .+....+ .|+|++.. .
T Consensus 67 ~~~~i~a~~~v~~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~~~f~~~~-~q~g~~t~~nmn~~evia~~--a 140 (488)
T 1yfm_A 67 PLPLVHAFGVLKKSAAIVNE---SLGGLDPKISKAIQQAADEVASGKLDDHFPLVV-FQTGSGTQSNMNANEVISNR--A 140 (488)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBS-SSCTTCHHHHHHHHHHHHHH--H
T ss_pred CHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHhcccccCCCcch-hhccccccccccHHHHHHHH--H
Confidence 46789999999999999999 899999877776643221 2111 100 00100 0011111 23444433 2
Q ss_pred HHHhccCcchhhcc-Cccc------cCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccceeeccccC
Q 013159 176 KQKCQSQPEIAKVL-EFFH------FACTSEDINNLAHALMLKEAIN-KVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247 (448)
Q Consensus 176 ~~~~g~~~~l~~~~-~~vH------~G~TsnDi~dTa~~L~lr~al~-~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~ 247 (448)
.+++|. +.+ ++|| +|+||||+++|+++|++|+++. . +.+.|.+|+++|.++|++|++++|+||||+
T Consensus 141 ~e~lG~-----~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~~-l~~~L~~L~~~L~~~A~e~~~~v~~GrTHl 214 (488)
T 1yfm_A 141 IEILGG-----KIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNE-LIPELTNLKNALEAKSKEFDHIVKIGRTHL 214 (488)
T ss_dssp HHC--------------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred HHHhCc-----cccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcEeeceecC
Confidence 567763 133 5555 9999999999999999999997 6 999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-cccccccCCCCChhhhHHHHHHHcCCCCCCCC--
Q 013159 248 QPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV-- 320 (448)
Q Consensus 248 Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~-- 320 (448)
|||+||||||||++|++.|.|+++||.++. ..+++|| |||| ++.+ |++. +.+.+++++.|||+..+..
T Consensus 215 Q~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~----~~~~-~~v~~~la~~lGl~~~~~~n~ 289 (488)
T 1yfm_A 215 QDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTK----PGFD-VKIAEQISKETGLKFQTAPNR 289 (488)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTHH-HHHHHHHHHHHSSCCEECSCH
T ss_pred ccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCccCC----hhHH-HHHHHHHHHHhCCCCccCccH
Confidence 999999999999999999999999999985 3455555 8999 5433 2221 4678899999999975443
Q ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhH
Q 013159 321 -TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANE 394 (448)
Q Consensus 321 -~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~ 394 (448)
+++.+||++++++++++.++++|+|||+||++|+| +|++.+ |.+++||||||||+||+.+|.+++ +|++
T Consensus 290 ~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei~l--p~~~~GSSiMP~K~NPv~~E~i~~---~a~~ 364 (488)
T 1yfm_A 290 FEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELML--PENEPGSSIMPGKVNPTQNEALTQ---VCVQ 364 (488)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEEC--CCCSCCCTTSTTCCCCHHHHHHHH---HHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeEEC--CCCCCcCCCcccccCcHHHHHHHH---HHHH
Confidence 36789999999999999999999999999999984 666664 567899999999999999999988 5559
Q ss_pred HHhhhhhhc-cccccccccccchHHHHHhHHH-------HHHHH-hhcccccccccc
Q 013159 395 DLSFLSMKL-PISRWQVRSNLTLLLIFFNFDL-------WLCLL-RQVPWYLKFKSD 442 (448)
Q Consensus 395 v~g~la~~L-~~s~~qRDl~~~~~~~~~~~~~-------~~~ll-~~~~~~~~~~~~ 442 (448)
++|+....+ ..+.++.+++.+++.+++++.. .+..+ ..+...++|++|
T Consensus 365 v~G~~~~i~~a~~~g~~eln~~~p~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~e 421 (488)
T 1yfm_A 365 VMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEP 421 (488)
T ss_dssp HHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred HHhHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 999875554 3455788888999865554444 22333 336666677654
No 21
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=7.2e-56 Score=466.03 Aligned_cols=330 Identities=19% Similarity=0.159 Sum_probs=250.8
Q ss_pred CCCccCCCCccchHHh--c--c----cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHc-----cCCc
Q 013159 86 PLDGRYWSKVKDLAPY--M--S----EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LID-----GFNM 151 (448)
Q Consensus 86 p~dgry~~~~~el~~i--f--S----e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~-----~~~~ 151 (448)
|-|..|+ ...+|.+ | | +.+++++|+.||.|++++++ ++|+||++.+++|..-+. +.+ .|..
T Consensus 18 p~~~~yg--~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~~i~~~~~~~~f~~ 92 (468)
T 3r6q_A 18 PKDAYYG--VQTIRATENFPITGYRIHPELIKSLGIVKKSAALANM---EVGLLDKEVGQYIVKAADEVIEGKWNDQFIV 92 (468)
T ss_dssp CTTCCCC--HHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTTTTGGGCCS
T ss_pred CcccccC--HHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCccccCCCc
Confidence 4444444 4567776 8 4 67899999999999999999 899999877777653222 221 1211
Q ss_pred ccHHhHHHHHhhhCCcH-hHHH----HHHHHHhccCcchhhccCc--cc------cCCChhhHHHHHHHHHHHHHHHHHH
Q 013159 152 DDALEVKNIERVTNHDV-KAVE----YFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLKEAINKVM 218 (448)
Q Consensus 152 ~d~~~l~~~e~~t~hDv-~a~e----~~L~~~~g~~~~l~~~~~~--vH------~G~TsnDi~dTa~~L~lr~al~~~l 218 (448)
+.+ ....+.++ +.++ ..+.+++|. +.++| || +|+||||+++|+++|++|+++.. +
T Consensus 93 ---~~~---~~g~gt~~nmnvnevia~~~~e~~G~-----~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~-l 160 (468)
T 3r6q_A 93 ---DPI---QGGAGTSINMNANEVIANRALELMGE-----EKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQ-L 160 (468)
T ss_dssp ---CSS---CSSTTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---cHH---hccccccccccHHHHHHHHHHHHhcc-----ccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHH-H
Confidence 110 01112333 3333 456677775 23443 55 79999999999999999999995 9
Q ss_pred HHHHHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-ccccc
Q 013159 219 FPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHL 293 (448)
Q Consensus 219 ~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~ 293 (448)
.+.|.+|+++|.++|++|++++|+||||+|+|+||||||||++|++.|.|+++||.++. ..+++|| |||| ++++
T Consensus 161 ~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~- 239 (468)
T 3r6q_A 161 IETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNAD- 239 (468)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTCC-
T ss_pred HHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeecCCCCCCC-
Confidence 99999999999999999999999999999999999999999999999999999999985 4566665 8999 4433
Q ss_pred ccCCCCChhhhHHHHHHHcCCCCCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccceeeecCC
Q 013159 294 SAYPDVNWPQITEDFVKSLGLSFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKA 365 (448)
Q Consensus 294 ~~~p~~d~~~v~~~la~~LGL~~~~~~---~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~~~~~~~~ 365 (448)
|++ .+.+.+++++.|||+.++.. +++.+||++++++++++.++++|+|||+||++|+| +|++.+ |+
T Consensus 240 ---~~~-~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~pr~g~gei~l--p~ 313 (468)
T 3r6q_A 240 ---PEY-ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVL--PA 313 (468)
T ss_dssp ---HHH-HHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSCCCEEC--CC
T ss_pred ---hHH-HHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEEC--CC
Confidence 111 13467788999999975432 36789999999999999999999999999999985 677765 56
Q ss_pred CCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhhhc-cccccccccccchHHHHHhHHH-------HHHHHh-hcccc
Q 013159 366 GEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL-PISRWQVRSNLTLLLIFFNFDL-------WLCLLR-QVPWY 436 (448)
Q Consensus 366 ~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~~L-~~s~~qRDl~~~~~~~~~~~~~-------~~~ll~-~~~~~ 436 (448)
+++|||||||||||+.+|.+++ +|++++|+....+ ....++.+++.+.|.+++++.. .+..+. .+...
T Consensus 314 ~~~GSSiMP~K~NP~~~E~i~~---~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~i~g 390 (468)
T 3r6q_A 314 RQPGSSIMPGKVNPVMPEVMNQ---VAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKG 390 (468)
T ss_dssp CSCCCTTSTTCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCCCCCCCCCCCcHHHHHHHH---HHHHHHhHHHHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999998 4559999875443 3345677777788866655444 233444 56666
Q ss_pred cccccc
Q 013159 437 LKFKSD 442 (448)
Q Consensus 437 ~~~~~~ 442 (448)
++|++|
T Consensus 391 l~vn~e 396 (468)
T 3r6q_A 391 IKANEE 396 (468)
T ss_dssp CEECHH
T ss_pred CEECHH
Confidence 777765
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=3e-55 Score=461.77 Aligned_cols=336 Identities=19% Similarity=0.175 Sum_probs=246.3
Q ss_pred cccCCCCCccCCCCccchHHh--c--cc------chhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHc--
Q 013159 81 LTALSPLDGRYWSKVKDLAPY--M--SE------YGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LID-- 147 (448)
Q Consensus 81 ~~~~sp~dgry~~~~~el~~i--f--Se------~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~-- 147 (448)
|..+..-...|++ ...+|.+ | |. ..++++++.||.|++++++ ++|+||++.+++|.+.+. +.+
T Consensus 30 ~g~~~vp~~~~yG-~qt~Ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~---~~G~l~~~~a~aI~~a~~ei~~g~ 105 (478)
T 3ocf_A 30 LGERDIPMDAYFG-IQTLRAVENFSLSDVALNHIPALVRALAMVKKAAATANY---KLRQLPEPKYAAIVAACDDIIDGL 105 (478)
T ss_dssp TEEEEECTTCSSC-HHHHHHHHHCCCSSCBGGGSHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCCcccccC-HHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHHcCc
Confidence 4444333334443 4567776 7 43 5899999999999999999 899999877777653222 221
Q ss_pred ---cCCcccHHhHHHHHhhhCCcH-hHH----HHHHHHHhccCcchhhccCc--cc------cCCChhhHHHHHHHHHHH
Q 013159 148 ---GFNMDDALEVKNIERVTNHDV-KAV----EYFLKQKCQSQPEIAKVLEF--FH------FACTSEDINNLAHALMLK 211 (448)
Q Consensus 148 ---~~~~~d~~~l~~~e~~t~hDv-~a~----e~~L~~~~g~~~~l~~~~~~--vH------~G~TsnDi~dTa~~L~lr 211 (448)
.|.. | .+ -...+.++ +.+ ...+.+.+|. +.++| || +|+||||+++|+++|++|
T Consensus 106 ~~~~f~~-~--~~---q~g~gt~~nmnvnevia~~a~e~~G~-----~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~ 174 (478)
T 3ocf_A 106 LMEQFVV-D--VF---QGGAGTSSNMNANEVIANRALEHLGR-----PRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALL 174 (478)
T ss_dssp TGGGCCC-B--TT---CSSTTHHHHHHHHHHHHHHHHHHTTC-----CTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHH
T ss_pred cccCCCc-c--hh---hccCCccccchHHHHHHHHHHHHhch-----hcCCCCccCCCCCCCCCCChhhHHHHHHHHHHH
Confidence 1211 1 00 00112233 333 3455677774 35666 77 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-ccc
Q 013159 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVG 287 (448)
Q Consensus 212 ~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvG 287 (448)
+++.. |.+.|..|+++|.++|++|++++|+||||+|+|+|||||+||++|++.|.|+++||.++. ..+++|| |||
T Consensus 175 ~~l~~-L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvG 253 (478)
T 3ocf_A 175 LSQNQ-VQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIG 253 (478)
T ss_dssp HTHHH-HHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGGEECTTC----
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCeeeC
Confidence 99985 999999999999999999999999999999999999999999999999999999999986 4455665 899
Q ss_pred c-cccccccCCCCChhhhHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccc
Q 013159 288 N-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAY 358 (448)
Q Consensus 288 T-~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~~---qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~ 358 (448)
| ++++ |++. +.+.+++++.|||+..+..+ ++++||++++++++++.++++|+|||+||++|+| +|+
T Consensus 254 Tg~~~~----~~~~-~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gE 328 (478)
T 3ocf_A 254 TRINAS----HAYA-EQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGPRSGLGE 328 (478)
T ss_dssp -----------CHH-HHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCC
T ss_pred CCcCCC----hhHH-HHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeE
Confidence 9 5543 3222 45778999999999755443 5788999999999999999999999999999985 566
Q ss_pred eeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhhh-ccccccccccccchHHHHHhHHHHHHH-------H
Q 013159 359 FKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMK-LPISRWQVRSNLTLLLIFFNFDLWLCL-------L 430 (448)
Q Consensus 359 ~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~~-L~~s~~qRDl~~~~~~~~~~~~~~~~l-------l 430 (448)
+.+ |++++||||||||+||+.+|.+++ +|++++|+.... +....++.+++.++|.+.+++.....+ +
T Consensus 329 i~l--p~~q~GSSiMP~K~NPv~~E~i~~---~a~~V~G~~~~i~~a~~~g~leln~~~p~i~~~l~~s~~ll~~~~~~~ 403 (478)
T 3ocf_A 329 IRL--PAVQPGSSIMPGKVNPVIPESVNQ---VCYQVIGNDLTVTMAAESGQLQLNAFEPLIVYNILSSMRLLGRAMTNL 403 (478)
T ss_dssp EEC--CCCSCCBTTBTTCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEC--CCCCCcCCCCCcccCcHHHHHHHH---HHHHHHhHHHHHHHHHhcCcchhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 654 578999999999999999999998 455999986543 334456777888888655555442222 2
Q ss_pred -hhcccccccccc
Q 013159 431 -RQVPWYLKFKSD 442 (448)
Q Consensus 431 -~~~~~~~~~~~~ 442 (448)
..+...++|++|
T Consensus 404 ~~~~v~gl~vn~e 416 (478)
T 3ocf_A 404 AERCVDGIEANVE 416 (478)
T ss_dssp HHHTGGGCEECHH
T ss_pred HHHhhCCCEECHH
Confidence 234556666654
No 23
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=6.7e-55 Score=460.86 Aligned_cols=346 Identities=18% Similarity=0.118 Sum_probs=246.7
Q ss_pred cccCCCCCccCCC-CccchHHhcc------cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHccCCcc
Q 013159 81 LTALSPLDGRYWS-KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDGFNMD 152 (448)
Q Consensus 81 ~~~~sp~dgry~~-~~~el~~ifS------e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~~~~~~ 152 (448)
|..+-.-+..|++ .+....+-|. +..+++.++.||.|++++++ ++|+||++.+++|.+-+. +.+....+
T Consensus 39 ~g~~~vp~~~~~G~~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~---~~Gil~~~~a~aI~~a~~ei~~~~~~~ 115 (495)
T 4adm_A 39 MGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNS---DLGLLAPEKADAIIAAAAEIADGQHDD 115 (495)
T ss_dssp TEEEEEETTCSCCHHHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHH---HTTSSCHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCccCChhhhcCchhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHhCcccC
Confidence 4444444455665 2333344442 45799999999999999999 899999877777653222 22111100
Q ss_pred cHHhHHHHHhhhCCcH-hHHHHHHHHHh--ccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159 153 DALEVKNIERVTNHDV-KAVEYFLKQKC--QSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKAL 229 (448)
Q Consensus 153 d~~~l~~~e~~t~hDv-~a~e~~L~~~~--g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL 229 (448)
.+ .+.......+.|+ ++++..|.++. |. +--..+++||+|+||||+++|+++|++|+++...+.+.|.+|+++|
T Consensus 116 ~f-~~~~~q~g~gt~~nmnvnevia~ra~lGG--~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L 192 (495)
T 4adm_A 116 QF-PIDVFQTGSGTSSNMNTNEVIASIAAKGG--VTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDAL 192 (495)
T ss_dssp GC-CCBSSSCTTCHHHHHHHHHHHHHHHHHTT--CCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CC-CcchhhccccccccccHHHHHHHHHHhCC--CccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111234466 78888887743 41 1012356677799999999999999999998524999999999999
Q ss_pred HHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-cccccccCCCCChhhh
Q 013159 230 CEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSAYPDVNWPQI 304 (448)
Q Consensus 230 ~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~~~~p~~d~~~v 304 (448)
.++|++|++++|+||||+|+|+|||||+||++|++.|.|+++||.++. ..+++|| |||| ++++ |++. +.+
T Consensus 193 ~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l~~~~LGgtAvGT~~~~~----~~~~-~~v 267 (495)
T 4adm_A 193 AAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAP----DDFG-VRV 267 (495)
T ss_dssp HHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSC----TTHH-HHH
T ss_pred HHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeecCCccCC----hhHH-HHH
Confidence 999999999999999999999999999999999999999999999985 4556665 8999 4443 3322 456
Q ss_pred HHHHHHHcCC-CCCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccceeeecCCCCcccCCCCC
Q 013159 305 TEDFVKSLGL-SFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS-----LAYFKQVTKAGEIGSSTMPH 375 (448)
Q Consensus 305 ~~~la~~LGL-~~~~~~---~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s-----~g~~~~~~~~~~~GSS~MPh 375 (448)
.+++++.||| +..+.. +++.+||++++++++++.++++|+|||+||++|+| +|++.+ |++++|||||||
T Consensus 268 ~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~e~gei~l--p~~q~GSSiMP~ 345 (495)
T 4adm_A 268 VAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQL--PDLQPGSSIMPG 345 (495)
T ss_dssp HHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSTTSCCCEEC--CCC---------
T ss_pred HHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEC--CCCCCCCCCCCC
Confidence 7889999999 554332 37889999999999999999999999999999986 777765 568999999999
Q ss_pred CcCchHHHHhhhhhhhhhHHHhhhhhhc-cccccccccccchHHHHHhHHH-------HHHHH-hhcccccccccc
Q 013159 376 KVNPIDFENSEGNLGKANEDLSFLSMKL-PISRWQVRSNLTLLLIFFNFDL-------WLCLL-RQVPWYLKFKSD 442 (448)
Q Consensus 376 KrNPv~~E~~~g~~~la~~v~g~la~~L-~~s~~qRDl~~~~~~~~~~~~~-------~~~ll-~~~~~~~~~~~~ 442 (448)
||||+.+|.+++ +|++++|+....+ ....++.+++.++|.+.+++.. .+..+ ..+...++|++|
T Consensus 346 K~NPv~~E~i~~---~a~~v~G~~~~i~~a~~~g~~eln~~~p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~e 418 (495)
T 4adm_A 346 KVNPVLPEAVTQ---VAAQVIGNDAAIAWGGANGAFELNVYIPMMARNILESFKLLTNVSRLFAQRCIAGLTANVE 418 (495)
T ss_dssp CCCCHHHHHHHH---HHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHH
T ss_pred CCCcHHHHHHHH---HHHHHHhHHHHHHHHHHcChHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence 999999999998 4559999875443 3345678888888875554433 22233 456666777665
No 24
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=7.6e-54 Score=450.74 Aligned_cols=350 Identities=17% Similarity=0.135 Sum_probs=261.3
Q ss_pred cccccCCCCCccCCCCccchHHhc--------ccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHH-Hc--
Q 013159 79 SSLTALSPLDGRYWSKVKDLAPYM--------SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGL-ID-- 147 (448)
Q Consensus 79 ~~~~~~sp~dgry~~~~~el~~if--------Se~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~-~~-- 147 (448)
..|..+..-+.+|++ ...+|.++ .+..+++++..|+.|++++.+ ++|+||++.+++|.+.+.. ++
T Consensus 30 d~~g~~~vp~~~~~g-~qt~Ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~~G~l~~~~a~aI~~a~~ev~~g~ 105 (482)
T 3gtd_A 30 DSFGEIQIEEKFYWG-AQTQRSLNNFKISKQKMPKILIRALAILKKCAAQVNY---EFGDLEYKIATSIDKAIDRILAGE 105 (482)
T ss_dssp ETTEEEEEETTCCCC-HHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCccCCcccccC-HHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcCC
Confidence 335555555566774 45566666 577999999999999999999 8999998777776533221 11
Q ss_pred ---cCCcccHHhHHHHHhhhCCcH-hHHHHHHHHHhccC-cc--hhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 013159 148 ---GFNMDDALEVKNIERVTNHDV-KAVEYFLKQKCQSQ-PE--IAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFP 220 (448)
Q Consensus 148 ---~~~~~d~~~l~~~e~~t~hDv-~a~e~~L~~~~g~~-~~--l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~ 220 (448)
.|.. |.-+-... -.+|-.+ ..+++.+.+++|.. .+ ....+++||+||||||+++|+++|++++.+...|.+
T Consensus 106 ~~~~fp~-~~~q~gsG-t~~Nmn~NevIa~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~ 183 (482)
T 3gtd_A 106 FEDNFPL-VVWQTGSG-TQTNMNMNEVIASIANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIP 183 (482)
T ss_dssp TTTSCCC-BSSSCTTC-HHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cccCCCe-ehhccCCC-ccccchHHHHHHHHHHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 1211 10000000 0122234 55788899999841 11 012356788899999999999999999888435999
Q ss_pred HHHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhcccc-cccc-ccccccc
Q 013159 221 VMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG-AVGN-YNAHLSA 295 (448)
Q Consensus 221 ~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~gG-AvGT-~~a~~~~ 295 (448)
.|.+|+++|.++|++|++++|+||||+|+|+|||||+||++|++.|.|+++||+++. ...++|| |||| ++++
T Consensus 184 ~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~--- 260 (482)
T 3gtd_A 184 ALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK--- 260 (482)
T ss_dssp HHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTTSC---
T ss_pred HHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC---
Confidence 999999999999999999999999999999999999999999999999999999986 3344454 6899 5543
Q ss_pred CCCCChhhhHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh---ccceeeecCCCCcc
Q 013159 296 YPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIG 369 (448)
Q Consensus 296 ~p~~d~~~v~~~la~~LGL~~~~~~~---qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s---~g~~~~~~~~~~~G 369 (448)
|+++ +.+.+++++.|||+.++..+ ++.+||++++++++++.++++|+|||+||++|+| .|+.++..|++++|
T Consensus 261 -~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~G 338 (482)
T 3gtd_A 261 -IGFD-IKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPG 338 (482)
T ss_dssp -TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCC
T ss_pred -chhH-HHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCC
Confidence 3332 45778999999999855443 7889999999999999999999999999999985 34434345678999
Q ss_pred cCCCCCCcCchHHHHhhhhhhhhhHHHhhhhh-hccccccccccccchHHHHHhHHHHHHHHh--------hcccccccc
Q 013159 370 SSTMPHKVNPIDFENSEGNLGKANEDLSFLSM-KLPISRWQVRSNLTLLLIFFNFDLWLCLLR--------QVPWYLKFK 440 (448)
Q Consensus 370 SS~MPhKrNPv~~E~~~g~~~la~~v~g~la~-~L~~s~~qRDl~~~~~~~~~~~~~~~~ll~--------~~~~~~~~~ 440 (448)
|||||||+||+.+|.++++ |.+++|+... .+..+.++.+++.++|.+.+++.....++. .+..-++|+
T Consensus 339 SSiMP~K~NPv~~E~i~~~---a~~v~G~~~~i~~a~~~g~~eln~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn 415 (482)
T 3gtd_A 339 SSIMPGKVNPTQVEALTMV---CTQVMGNHVTVTIAGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPN 415 (482)
T ss_dssp CSSSTTCCCCHHHHHHHHH---HHHHHHHHHHHHHHHTCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEC
T ss_pred CCCCCCCCCcHHHHHHHHH---HHHHHHHHHHHHHHHhcccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEEC
Confidence 9999999999999999984 5599998643 344466778888888887666666444333 344555555
Q ss_pred cc
Q 013159 441 SD 442 (448)
Q Consensus 441 ~~ 442 (448)
+|
T Consensus 416 ~e 417 (482)
T 3gtd_A 416 IA 417 (482)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 25
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.6e-52 Score=439.51 Aligned_cols=350 Identities=18% Similarity=0.122 Sum_probs=251.9
Q ss_pred cccccCCCCCccCCC-CccchHHhc--c------cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHcc
Q 013159 79 SSLTALSPLDGRYWS-KVKDLAPYM--S------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LIDG 148 (448)
Q Consensus 79 ~~~~~~sp~dgry~~-~~~el~~if--S------e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~~ 148 (448)
..|..+-.-+.+|++ -|..-...| + ...+++++..|..|.+++.. ++| +|+..+++|.+.+. +++.
T Consensus 35 D~~G~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~~~i~a~~~vkkAaA~an~---~~G-l~~~~a~aI~~a~~ev~~g 110 (490)
T 3e04_A 35 DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQ---DYG-LDPKIANAIMKAADEVAEG 110 (490)
T ss_dssp ETTEEEEEETTCCCCHHHHHHHHHCCCSCGGGBCCHHHHHHHHHHHHHHHHHGG---GGT-CCHHHHHHHHHHHHHHHTT
T ss_pred ccCcCccCcchhhhhHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHHHHHhh---hcC-CCHHHHHHHHHHHHHHHcC
Confidence 345555555567775 222223334 2 24789999999999999999 899 99766666543222 2211
Q ss_pred CCcccHHh-H--HHH--HhhhCCcH-hHHHHHHHHHhccC-cc--hhhccCccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 013159 149 FNMDDALE-V--KNI--ERVTNHDV-KAVEYFLKQKCQSQ-PE--IAKVLEFFHFACTSEDINNLAHALMLKEAINKVMF 219 (448)
Q Consensus 149 ~~~~d~~~-l--~~~--e~~t~hDv-~a~e~~L~~~~g~~-~~--l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~ 219 (448)
-. +... + ... -..+|-.+ ..+++.+.+++|.. ++ .-..+++||+||||||+++|+++|++++.+...|.
T Consensus 111 ~~--~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~ 188 (490)
T 3e04_A 111 KL--NDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLL 188 (490)
T ss_dssp SC--GGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred Cc--ccCCceeeecCCCCCcccccHHHHHHHHHHHHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 0 000 00122335 57899999999841 11 01234567889999999999999999988743499
Q ss_pred HHHHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---hhhccc-ccccc-cccccc
Q 013159 220 PVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFA-GAVGN-YNAHLS 294 (448)
Q Consensus 220 ~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~lg~~g-GAvGT-~~a~~~ 294 (448)
+.|.+|+++|.++|++|++++|+||||+|+|+|||||+||++|++.|.|+++||.++. ...++| ||||| ++++
T Consensus 189 ~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~~~~lGgtAvGTg~~~~-- 266 (490)
T 3e04_A 189 PGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTR-- 266 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTTSEECTTCTTTSSCTTSC--
T ss_pred HHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCC--
Confidence 9999999999999999999999999999999999999999999999999999999985 233444 57899 5543
Q ss_pred cCCCCChhhhHHHHHHHcCCCCCCCCc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh---ccceeeecCCCCc
Q 013159 295 AYPDVNWPQITEDFVKSLGLSFNPYVT---QIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEI 368 (448)
Q Consensus 295 ~~p~~d~~~v~~~la~~LGL~~~~~~~---qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s---~g~~~~~~~~~~~ 368 (448)
|+++ +.+.+++++.|||+.++..+ ++.+||++++++++++.++++|+|||+||++|+| .|+.++..|++++
T Consensus 267 --~~~~-~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~ 343 (490)
T 3e04_A 267 --IGFA-EKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPENEP 343 (490)
T ss_dssp --TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSC
T ss_pred --hhHH-HHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEECCCCCC
Confidence 3332 45788999999999855443 7889999999999999999999999999999986 3443444567899
Q ss_pred ccCCCCCCcCchHHHHhhhhhhhhhHHHhhhhh-hccccccccccccchHHHHHhHHHHHHHHh--------hccccccc
Q 013159 369 GSSTMPHKVNPIDFENSEGNLGKANEDLSFLSM-KLPISRWQVRSNLTLLLIFFNFDLWLCLLR--------QVPWYLKF 439 (448)
Q Consensus 369 GSS~MPhKrNPv~~E~~~g~~~la~~v~g~la~-~L~~s~~qRDl~~~~~~~~~~~~~~~~ll~--------~~~~~~~~ 439 (448)
||||||||+||+.+|.++++ |.+++|+... .+..+.++.+++.++|.+.+++.....++. .+...+++
T Consensus 344 GSSiMP~K~NPv~~E~i~~~---a~~v~G~~~ai~~a~~~g~~eln~~~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~v 420 (490)
T 3e04_A 344 GSSIMPGKVNPTQCEAMTMV---AAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQA 420 (490)
T ss_dssp C-----CCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEE
T ss_pred CCCCCCCCCCcHHHHHHHHH---HHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 99999999999999999984 5599997643 344456788999999987777766444433 34455555
Q ss_pred ccc
Q 013159 440 KSD 442 (448)
Q Consensus 440 ~~~ 442 (448)
++|
T Consensus 421 n~e 423 (490)
T 3e04_A 421 NTE 423 (490)
T ss_dssp CHH
T ss_pred CHH
Confidence 554
No 26
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.9e-52 Score=440.18 Aligned_cols=351 Identities=18% Similarity=0.177 Sum_probs=244.7
Q ss_pred cccccCCCCCccCCC-CccchHHhcc------cchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH-HHc---
Q 013159 79 SSLTALSPLDGRYWS-KVKDLAPYMS------EYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQG-LID--- 147 (448)
Q Consensus 79 ~~~~~~sp~dgry~~-~~~el~~ifS------e~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~-~~~--- 147 (448)
..|..+..-+.+|++ -|..-.+-|. ...+++++..|+.|.|++.+ ++|+||++.+++|.+.+. +++
T Consensus 41 d~~g~~~vp~~~~~g~qt~ra~~nf~i~~~~~~~~~i~a~~~vk~AaA~an~---~lG~l~~~~a~aI~~A~~ei~~g~~ 117 (495)
T 4hgv_A 41 DTFGPIEVASDRYWGAQAQRSLGNFKIGWEKQPLAIVRALGIVKQAAARANM---ALGRLDPAIGDAIVKAAQEVIDGKL 117 (495)
T ss_dssp ETTEEEEEETTCCCCHHHHHHHHHCCCCSCBCCHHHHHHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHTTSS
T ss_pred cCCCCccCCCccchHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHcCch
Confidence 345555555667765 1222222331 24589999999999999999 899999877777754333 221
Q ss_pred --cCCcccHHhHHHHHhhhCCcH-hHHHHHHHHHhccCc---chhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013159 148 --GFNMDDALEVKNIERVTNHDV-KAVEYFLKQKCQSQP---EIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPV 221 (448)
Q Consensus 148 --~~~~~d~~~l~~~e~~t~hDv-~a~e~~L~~~~g~~~---~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~ 221 (448)
+|.. |.-+-.... .+|..+ ..+.....+.+|... .....++|||+|+||||+++||++|++++.+.+.|.+.
T Consensus 118 ~~~F~~-d~~q~gsgt-~~nmn~nevian~a~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~ 195 (495)
T 4hgv_A 118 DEHFPL-VVWQTGSGT-QSNMNANEVVSNRAIELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPA 195 (495)
T ss_dssp GGGCCC-BSSSCTTCH-HHHHHHHHHHHHHHHHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhccch-hhhhhcccc-ccCcchhHHHHHHHHHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 111111111 122223 333344455665311 01235789999999999999999999998774359999
Q ss_pred HHHHHHHHHHHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH---h-hhcccccccc-cccccccC
Q 013159 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---I-MGKFAGAVGN-YNAHLSAY 296 (448)
Q Consensus 222 L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~---~-lg~~gGAvGT-~~a~~~~~ 296 (448)
|.+|+++|.++|++|++++|+||||+|||+|||||+||++|+++|.|+++||+++. . +...|+|+|| .+++
T Consensus 196 L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~~~~~lGgtAvGtg~~~~---- 271 (495)
T 4hgv_A 196 LKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGLCELAQGGTAVGTGLNAP---- 271 (495)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHTEECTTCTTTSSCTTSC----
T ss_pred HHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhhhcccCc----
Confidence 99999999999999999999999999999999999999999999999999999875 2 2223568898 4433
Q ss_pred CCCChhhhHHHHHHHcCCCCCCCC---ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh---ccceeeecCCCCccc
Q 013159 297 PDVNWPQITEDFVKSLGLSFNPYV---TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGS 370 (448)
Q Consensus 297 p~~d~~~v~~~la~~LGL~~~~~~---~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s---~g~~~~~~~~~~~GS 370 (448)
|+++ ..+.+++++.+||.+.+.. .++++||++++++++++.++++|+|||+|||+|+| .|+.++..+++++||
T Consensus 272 ~~~~-~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~~g~~Ei~~p~~q~GS 350 (495)
T 4hgv_A 272 VGFA-EKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPENEPGS 350 (495)
T ss_dssp TTHH-HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCC
T ss_pred hhHH-HHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEEecCcCCccc
Confidence 3322 3467889999998875433 36889999999999999999999999999999986 678887788999999
Q ss_pred CCCCCCcCchHHHHhhhhhhhhhHHHhhhhhh-cc--ccccccccccch--HHHHHhHHH----HHHHHhhccccccccc
Q 013159 371 STMPHKVNPIDFENSEGNLGKANEDLSFLSMK-LP--ISRWQVRSNLTL--LLIFFNFDL----WLCLLRQVPWYLKFKS 441 (448)
Q Consensus 371 S~MPhKrNPv~~E~~~g~~~la~~v~g~la~~-L~--~s~~qRDl~~~~--~~~~~~~~~----~~~ll~~~~~~~~~~~ 441 (448)
||||||+||+.+|+++++++ +++|..... +. ..++|||...+. ..+++.+.. ...+...+...+++++
T Consensus 351 SiMP~K~NPv~~E~i~~~a~---~v~G~~~~i~~a~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~ 427 (495)
T 4hgv_A 351 SIMPGKVNPTQCEALTQVCV---QVFGNHAALTFAGSQGHFELNVYNPLMAYNFLQSVQLLADAAISFTDNCVVGIEARE 427 (495)
T ss_dssp -----CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECH
T ss_pred ccCccccChHHHHHHHHHHH---HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCEECH
Confidence 99999999999999998554 899875432 22 344566554332 223333332 2223345666677766
Q ss_pred c
Q 013159 442 D 442 (448)
Q Consensus 442 ~ 442 (448)
|
T Consensus 428 e 428 (495)
T 4hgv_A 428 D 428 (495)
T ss_dssp H
T ss_pred H
Confidence 5
No 27
>2wlv_A GAG polyprotein, HIV-2 capsid,; virus protein, RNA-binding, capsid protein, viral nucleoprotein, AIDS; 1.25A {Human immunodeficiency virus type 2} PDB: 2x82_A
Probab=30.98 E-value=46 Score=29.27 Aligned_cols=51 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCCCCcccchh
Q 013159 192 FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256 (448)
Q Consensus 192 vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q~A~PtTfG 256 (448)
+--|+|.+|++. +|-.--. -...++-|.+++-+.|.++ .|+|- +|-|+..|
T Consensus 42 LSegaTP~Dln~---mLn~vgg----hqaamQ~lkd~INEeaaew------dr~HP-~~gP~ppg 92 (144)
T 2wlv_A 42 LSEGCTPYDINQ---MLNCVGD----HQAAMQIIREIINEEAAEW------DVQHP-IPGPLPAG 92 (144)
T ss_dssp HTTTCCHHHHHH---HHHTTTT----CHHHHHHHHHHHHHHHHHH------HHTCC-CCCCCCTT
T ss_pred HhcccCcHHHHH---HHHhccc----cHHHHHHHHHHHHHHHHHh------cccCC-CCCCCCCC
Confidence 344899999973 2322222 2245556778888888887 67898 88898777
No 28
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=23.76 E-value=63 Score=31.56 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeccccCC
Q 013159 169 KAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQ 248 (448)
Q Consensus 169 ~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~gRTH~Q 248 (448)
.+.++.+.++.- .||.-.-=..+--|+|.+|++. +|-..-. -...+.-|.+++-+.|.++ .|+|-+
T Consensus 153 naWVkviEEkaf-spEvIpmFsALSeg~Tp~Dln~---mLn~vgg----hqaamQ~lkd~inEeAaeW------dr~HP~ 218 (289)
T 1l6n_A 153 NAWVKVVEEKAF-SPEVIPMFSALSEGATPQDLNT---MLNTVGG----HQAAMQMLKETINEEAAEW------DRLHPV 218 (289)
T ss_dssp HHHHHHHHHHSS-STTTHHHHHHHTTTCCHHHHHH---HHHHCCS----CHHHHHHHHHHHHHHHHHH------HHHSCC
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHhcccChHHHHH---HHHhccc----hHHHHHHHHHHHHHHHHHh------hccCCC
Confidence 355566666543 2443333345667999999984 2322222 2235555778888888887 689999
Q ss_pred CCcccchh
Q 013159 249 PASPTTLG 256 (448)
Q Consensus 249 ~A~PtTfG 256 (448)
+|-|+..|
T Consensus 219 ~agp~ppg 226 (289)
T 1l6n_A 219 HAGPIAPG 226 (289)
T ss_dssp CCCSCCSS
T ss_pred CCCCCCCC
Confidence 99998766
Done!