RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013159
(448 letters)
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase.
Length = 458
Score = 675 bits (1744), Expect = 0.0
Identities = 258/337 (76%), Positives = 300/337 (89%)
Query: 73 SREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVP 132
SR+ ELS+LTALSPLDGRYWSKVKDL P SE+GLI +RVLVE+KWLLKLS+IPEVTEVP
Sbjct: 1 SRDLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLSQIPEVTEVP 60
Query: 133 SFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFF 192
FS+EA S+L+G+I GF++DDALEVK IERVTNHDVKAVEYFLKQKC+S PE+AKVLEFF
Sbjct: 61 PFSDEANSFLEGIIAGFSVDDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFF 120
Query: 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
HFACTSEDINNL+HALMLKE +N V+ P MD++IKA+ +A + A + MLSRTHGQPASP
Sbjct: 121 HFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASP 180
Query: 253 TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312
TTLGKE++ FA RL R+R+++S+V+I GKFAGAVGNYNAH+SAYP+V+WP + E+FV SL
Sbjct: 181 TTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSL 240
Query: 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSST 372
GL+FNPYVTQIE HDYMA+LF A RFNNILIDFDRD+W YISL YFKQ+TKAGE+GSST
Sbjct: 241 GLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSST 300
Query: 373 MPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
MPHKVNPIDFENSEGNLG AN +LS LSMKLPISR Q
Sbjct: 301 MPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQ 337
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 638 bits (1648), Expect = 0.0
Identities = 216/333 (64%), Positives = 263/333 (78%)
Query: 77 ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
ELS+LTALSPLDGRY SK L P SE+GLI +RV VE++WL+ L+ P + EVP FS
Sbjct: 2 ELSALTALSPLDGRYASKTAALRPIFSEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSA 61
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
EA ++L+ +++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFAC
Sbjct: 62 EANAFLRAIVENFSEEDAARIKEIERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFAC 121
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
TSEDINNL+HALMLKEA +V+ P + +LI AL E+A + A++ MLSRTHGQPA+PTTLG
Sbjct: 122 TSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLG 181
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
KE++ A RL R+ +++ VEI+GK GAVGNYNAHL+AYP+V+W + +FV+SLGL++
Sbjct: 182 KEMANVAYRLERQLKQLEAVEILGKINGAVGNYNAHLAAYPEVDWHAFSREFVESLGLTW 241
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
NPY TQIE HDY+A+LF A RFN ILID DRDVWGYISL YFKQ TKAGEIGSSTMPHK
Sbjct: 242 NPYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYISLGYFKQKTKAGEIGSSTMPHK 301
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
VNPIDFENSEGNLG AN L L+ KLPISRWQ
Sbjct: 302 VNPIDFENSEGNLGLANALLEHLAAKLPISRWQ 334
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 552 bits (1425), Expect = 0.0
Identities = 191/312 (61%), Positives = 247/312 (79%)
Query: 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEV 157
L PY SEY LI +RV VE++WL+ LS + E+ EVP ++E +L+ +I+ F+ +DAL +
Sbjct: 1 LRPYFSEYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRI 60
Query: 158 KNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217
K IE TNHDVKAVEYFLK+K ++ + K+ EF HFACTSEDINNLA+ALM+KEA N+V
Sbjct: 61 KEIEATTNHDVKAVEYFLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEV 120
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE 277
+ P++ ++I +L ++AK+ A++ MLSRTHGQPA+PTTLGKE++VF RL R+ +++ Q+E
Sbjct: 121 ILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQLKQIE 180
Query: 278 IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFV 337
I+GKF GAVGN+NAHL AYPDV+W + +E FV SLGL++NPY TQIE HDY+A+LF A
Sbjct: 181 ILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHDYIAELFDALA 240
Query: 338 RFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
R N ILID RD+WGYISL YFKQ K GE+GSSTMPHKVNPIDFEN+EGNLG +N L+
Sbjct: 241 RINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLN 300
Query: 398 FLSMKLPISRWQ 409
LS KLPISR Q
Sbjct: 301 HLSAKLPISRLQ 312
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 325 bits (836), Expect = e-108
Identities = 99/314 (31%), Positives = 148/314 (47%), Gaps = 18/314 (5%)
Query: 98 LAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEV 157
+ SE + + VE +++ + + EA ++ D F DA +
Sbjct: 1 MRAIFSEENKLRTWLDVEAALAEAQAELGLIPK------EAAEEIRAAADVFE-IDAERI 53
Query: 158 KNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKV 217
IE+ T HDV A Y L +KC E A E+ HF TS+DIN+ A AL L++A++ +
Sbjct: 54 AEIEKETGHDVIAFVYALAEKC---GEDAG--EYVHFGATSQDINDTALALQLRDALD-I 107
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE 277
+ P +D LI AL ++A ++ + ML RTHGQ A PTT GK+ +V+A L R + + +
Sbjct: 108 ILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEAR 167
Query: 278 IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFV 337
G G H S P P++ E + LGL P TQIE D +A+L A
Sbjct: 168 ERVLVGGISGAVGTHASLGPK--GPEVEERVAEKLGLKVPPITTQIEPRDRIAELLSALA 225
Query: 338 RFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANED 395
L D+ + ++ + G++GSSTMPHK NPID EN EG
Sbjct: 226 LIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRAL 285
Query: 396 LSFLSMKLPISRWQ 409
+ L + +
Sbjct: 286 AAPALENL-VQWHE 298
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 287 bits (736), Expect = 8e-93
Identities = 101/325 (31%), Positives = 149/325 (45%), Gaps = 20/325 (6%)
Query: 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI 146
LDGRY S + SE + + VE +++ + + E +
Sbjct: 1 LDGRYSSPE--MRAIFSEEAKLRAWLKVEAALARAQAELGVIP--AEAAAEIDA-----A 51
Query: 147 DGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAH 206
F D +K IE T HDVKA+ L +K + E+ HF TS+DI + A
Sbjct: 52 AAFAEFDLERIKEIEAETGHDVKALVRALAEKVG-----EEASEYVHFGATSQDIIDTAL 106
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
AL LKEA+ ++ P + +LI+AL E+A ++ + ML RTHGQPA PTT GK+ + + L
Sbjct: 107 ALQLKEAL-DLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAEL 165
Query: 267 GRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326
R + + + E G +G L+A D+ ++ E + LGL P TQ+
Sbjct: 166 LRHLERLEEAEE-RIIVGKIGGAVGTLAALGDLG-AEVEERVAEKLGLKPAPISTQVSPR 223
Query: 327 DYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFK--QVTKAGEIGSSTMPHKVNPIDFEN 384
D +A+ F A L F RD+ + + G++GSS MPHK NPID EN
Sbjct: 224 DRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVGSSAMPHKRNPIDSEN 283
Query: 385 SEGNLGKANEDLSFLSMKLPISRWQ 409
G A +S L L +
Sbjct: 284 VTGLARVARALVSTLLENLV-LWHE 307
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 285 bits (731), Expect = 3e-92
Identities = 111/326 (34%), Positives = 156/326 (47%), Gaps = 23/326 (7%)
Query: 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI 146
LD RY ++ SE + VE+ L L+ E+ EA ++
Sbjct: 1 LDERY--GTPEMRAIWSEENKFKTWLDVEVALLRALA------ELGVIPAEAVKEIRA-K 51
Query: 147 DGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAH 206
F D +K IE VT HDVKAV Y LK+KC EF HF TS DI + A
Sbjct: 52 ANFTDVDLARIKEIEAVTRHDVKAVVYALKEKCG------AEGEFIHFGATSNDIVDTAL 105
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
AL+L++A+ +++ P + +LI L ++A + + ML RTHGQ A PTTLGK+ +++A +
Sbjct: 106 ALLLRDAL-EIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALWADEM 164
Query: 267 GRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV-KSLGLSFNPYVTQIET 325
R+ + + Q + K G G H +AYP V + E+ V + LGL P TQIE
Sbjct: 165 KRQLERLLQAKERIKVGGISGAVGTHAAAYPLV---EEVEERVTEFLGLKPVPISTQIEP 221
Query: 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKA--GEIGSSTMPHKVNPIDFE 383
D A+L A L F D+ +F+ G++GSS MPHK NPIDFE
Sbjct: 222 RDRHAELLDALALLATTLEKFAVDIRLLQRTEHFEVEEPFGKGQVGSSAMPHKRNPIDFE 281
Query: 384 NSEGNLGKANEDLSFLSMKLPISRWQ 409
N G LS +P +
Sbjct: 282 NVCGLARVIRSVLSPALENVP-LWHE 306
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 214 bits (548), Expect = 3e-66
Identities = 81/310 (26%), Positives = 127/310 (40%), Gaps = 29/310 (9%)
Query: 108 IYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167
I + VE L+++ + + E A++ L L D A + E HD
Sbjct: 1 IRADLQVEKAHAKALAELGLLPK-----EAAEAILAAL-DEILEGIAADQVEQEGSGTHD 54
Query: 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIK 227
V AVE L ++ + H +S DI + A L L++A++ ++ P + LI
Sbjct: 55 VMAVEEVLAERA-----GELNGGYVHTGRSSNDIVDTALRLALRDALDILL-PALKALID 108
Query: 228 ALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKF----A 283
AL A+++ + M RTH Q A PTTLG E++ +A L R+ + + +
Sbjct: 109 ALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGG 168
Query: 284 GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS-FNPYVTQ-IETHDYMAKLFYAFVRFNN 341
GAVG +A P E + LG P TQ + D++ +L A
Sbjct: 169 GAVG---TGANA-----PPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAV 220
Query: 342 ILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFL 399
L D+ S + A + GSS MP KVNP+ E G G+ +L+ L
Sbjct: 221 SLSKIANDLRLLSSGEFGEVEL-PDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAAL 279
Query: 400 SMKLPISRWQ 409
L +
Sbjct: 280 LEALKGGPLE 289
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 188 bits (480), Expect = 2e-56
Identities = 75/308 (24%), Positives = 121/308 (39%), Gaps = 21/308 (6%)
Query: 100 PYM---SEYGLIYFRVLVE-IKWLLKLSKIPEVTEVPSFSEEAKSYLQGL---IDGFNMD 152
M ++ FR+ E IK L L K V EEA + ++ L + D
Sbjct: 9 ALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLL-KEEAAAIIKALDEVAEEGKAD 67
Query: 153 DALEVKNIERVTNHDVKA-VEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLK 211
DA +K I+ + V + + + H +S D A L LK
Sbjct: 68 DAFPLKVIQEGSGTAVNMNLNEVIGELLGQLVHPND---KVHTGQSSNDQVPTALRLALK 124
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRER- 270
A+++V+ P + +LI AL E AK+ A++ RTH Q A+P TLG+E+S +A+ L R+
Sbjct: 125 LALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALTRDLE 184
Query: 271 --QEISQVEIMGKFAGAVGNYNAHLSAYP--DVNWPQITEDFVKSLGLSFNPYVTQIETH 326
+++ ++ G + ++ ++ F L +
Sbjct: 185 RLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELG--FFTGLPVPAPNSFEATSDR 242
Query: 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFEN 384
D + + A L F D+ S + + GE GSS MP KVNP E
Sbjct: 243 DAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLEL 302
Query: 385 SEGNLGKA 392
G G+
Sbjct: 303 LRGKAGRV 310
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 128 bits (323), Expect = 6e-33
Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 48/251 (19%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
D VK IE T HDV A + + C E + + HF TS D+ + A AL L+E
Sbjct: 52 DVERVKEIEAETKHDVIAFVTAIAEYCG---EAGR---YIHFGLTSSDVVDTALALQLRE 105
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ ++ + +L++ L + A ++ + M+ RTHG A PTT G + +++ R +
Sbjct: 106 AL-DIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLER 164
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
+ + ++GK +GAVG Y A+L P++ E + LGL P TQ+ D
Sbjct: 165 LKEARERILVGKISGAVGTY-ANLG-------PEVEERVAEKLGLKPEPISTQVIQRDRH 216
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLA----------------YFKQVTKAGEIGSSTM 373
A+ I ++ +A F G+ GSS M
Sbjct: 217 AEYLST---LALIASTLEK-------IATEIRHLQRTEVLEVEEPF----SKGQKGSSAM 262
Query: 374 PHKVNPIDFEN 384
PHK NPI EN
Sbjct: 263 PHKRNPILSEN 273
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 120 bits (304), Expect = 1e-31
Identities = 58/243 (23%), Positives = 84/243 (34%), Gaps = 52/243 (21%)
Query: 171 VEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC 230
VE L + H +S DI A L L++A++ ++ P++ LI AL
Sbjct: 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLL-PLLKALIDALA 74
Query: 231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYN 290
A+ + M RTH Q A P TLG E+ +A LGR+ + + + + + A+
Sbjct: 75 LKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEA-AVAEALDALALAA 133
Query: 291 AHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDV 350
AHLS +I ED L
Sbjct: 134 AHLS--------KIAEDLR---LLLSGE-------------------FGELGEPFL---- 159
Query: 351 WGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQV 410
G+ GSS MP KVNP+ E G G +L + L
Sbjct: 160 --------------PGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKG--GPE 203
Query: 411 RSN 413
R N
Sbjct: 204 RDN 206
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 103 bits (259), Expect = 5e-24
Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 157 VKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINK 216
VK IE +HD+ AV L + C+ E+ HF TS DI + A AL LK+++ +
Sbjct: 67 VKEIEAEIHHDIMAVVKALSEVCEGD-----AGEYVHFGATSNDIIDTATALQLKDSL-E 120
Query: 217 VMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGR--ER-QEI 273
++ + KL L + A+++ N + RTHGQ A PTT G +++A + R ER +++
Sbjct: 121 ILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQL 180
Query: 274 SQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHD----YM 329
+G+ GAVG +A+ + +I + ++ LGL Q+ D +M
Sbjct: 181 KPRVCVGQMTGAVGT----QAAFGEKGI-EIQKRVMEILGLKPVLISNQVIQRDRHAEFM 235
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI---------GSSTMPHKVNPI 380
L + I ++ R++ Q T+ GE+ GSSTMPHK NPI
Sbjct: 236 MFLANIATTLDKIGLEI-RNL----------QRTEIGEVEEEFGKKQVGSSTMPHKRNPI 284
Query: 381 DFEN 384
E
Sbjct: 285 TSEQ 288
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 101 bits (253), Expect = 3e-23
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 32/210 (15%)
Query: 186 AKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRT 245
E+ H+ T++DI + A L L++A++ + +D L+ AL +A + + M+ RT
Sbjct: 87 DAAGEYVHWGATTQDIIDTALVLQLRDALDLLE-RDLDALLDALARLAATHRDTPMVGRT 145
Query: 246 HGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAGAVGNYNAHLSAYPDVNWP 302
H Q A P T G +++V+ L R R+ + ++ ++ +F GA G L++ D
Sbjct: 146 HLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGT----LASLGDQG-L 200
Query: 303 QITEDFVKSLGLSFNPYVTQIETH---DYMAKLFYAFVRFNNILIDFDRDVWGYISLAYF 359
+ E LGL V I H D +A+L L RDV Y
Sbjct: 201 AVQEALAAELGL----GVPAIPWHTARDRIAELASFLALLTGTLGKIARDV-------YL 249
Query: 360 KQVTKAGEI---------GSSTMPHKVNPI 380
T+ GE+ GSSTMPHK NP+
Sbjct: 250 LMQTEIGEVAEPFAKGRGGSSTMPHKRNPV 279
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 82.3 bits (203), Expect = 6e-17
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 32/242 (13%)
Query: 156 EVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAIN 215
V+ IE HDV A+ L ++C + + HF TS DIN+ A AL + + +
Sbjct: 66 RVREIESEIKHDVMALVEALSEQCSAGKN------YVHFGVTSNDINDTATALQIHDFV- 118
Query: 216 KVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQ---E 272
++ + L++ L ++ + + M+ RTHGQ ASP T G + +V+ + R E
Sbjct: 119 SIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTE 178
Query: 273 ISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHD-YMAK 331
+ GK G VG A L D I ++ LG+ TQI D Y+
Sbjct: 179 MGDRAFAGKVLGPVGT-GAALG--KDA--LDIQNRVMEILGIYSEIGSTQIVNRDRYIEY 233
Query: 332 LFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNPIDF 382
L N I + ++ +L YF + ++GSS+MP KVNPI+
Sbjct: 234 LSV----INGISVTLEKIATEIRNLQRPEIDEVSEYFDE---ESQVGSSSMPSKVNPINS 286
Query: 383 EN 384
EN
Sbjct: 287 EN 288
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 80.0 bits (198), Expect = 3e-16
Identities = 67/242 (27%), Positives = 103/242 (42%), Gaps = 38/242 (15%)
Query: 160 IERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMF 219
IE VT HDV A L + P+ F H TS D+ + + L A + ++
Sbjct: 65 IEAVTKHDVIAFLTHLAEF--VGPDA----RFVHQGMTSSDVLDTCLNVQLVRAAD-LLL 117
Query: 220 PVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVF--AIRLGRERQEISQVE 277
+D+++ AL + A ++ + + R+HG A PTT G +++ F RER ++ E
Sbjct: 118 ADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAREE 177
Query: 278 I-MGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAF 336
I +GAVG + A++ P++ E K LGL P TQ+ D A F
Sbjct: 178 IATCAISGAVGTF-ANID-------PRVEEHVAKKLGLKPEPVSTQVIPRDRHAMFFATL 229
Query: 337 ----VRFNNILIDFD-------RDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENS 385
+ I+ + + S G+ GSS MPHK NP+ EN
Sbjct: 230 GVIASSIERLAIEIRHLQRTEVLEAEEFFS---------PGQKGSSAMPHKRNPVLTENL 280
Query: 386 EG 387
G
Sbjct: 281 TG 282
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 76.3 bits (188), Expect = 6e-15
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 34/247 (13%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
D + IE+ T HD+ A FL +S E ++ F H+ TS D + A AL +++
Sbjct: 55 DIARIDEIEKTTKHDLIA---FLTSVSESLGEESR---FVHYGMTSSDCIDTAVALQMRD 108
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
++ K++ + L++A+ + A ++ + M+ R+HG P T G ++++ + R +
Sbjct: 109 SL-KLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGLVLAIWYDEIKRHLKA 167
Query: 273 ISQ---VEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV-KSLGLSFNPYVTQIETHDY 328
+ V +GK +GA+GN+ AH P E+ V + LGL P Q+ D
Sbjct: 168 LEHTMEVISVGKISGAMGNF-AHA--------PLELEELVCEELGLKPAPVSNQVIQRDR 218
Query: 329 MAKLFYAFV-------RFNNILIDFDR-DVWGYISLAYFKQVTKAGEIGSSTMPHKVNPI 380
A+L A + + R +V Y + YF + G+ GSS MPHK NP+
Sbjct: 219 YARLASALALLASSCEKIAVAIRHLQRTEV--YEAEEYFSK----GQKGSSAMPHKRNPV 272
Query: 381 DFENSEG 387
EN G
Sbjct: 273 LSENITG 279
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 68.6 bits (168), Expect = 9e-13
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 17/200 (8%)
Query: 187 KVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246
+ + H TS+D+ + + L L++A++ ++ + +L AL ++A + + M RT
Sbjct: 88 EAARYVHRGATSQDVIDTSLMLQLRDALDLLL-ADLGRLADALADLAARHRDTPMTGRTL 146
Query: 247 GQPASPTTLGKEISVFAIRLGRERQEISQVEIMG---KFAGAVGNYNA-HLSAYPDVNWP 302
Q A PTT G + + + + R R ++ + +F GA G A
Sbjct: 147 LQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTRGGA----- 201
Query: 303 QITEDFVKSLGLSFN--PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFK 360
+ LGL P+ TQ D +A+ A L D+ +S
Sbjct: 202 -VAAALAARLGLPLPALPWHTQ---RDRIAEFGSALALVAGALGKIAGDI-ALLSQTEVG 256
Query: 361 QVTKAGEIGSSTMPHKVNPI 380
+V +AG GSS MPHK NP+
Sbjct: 257 EVFEAGGGGSSAMPHKRNPV 276
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 68.5 bits (168), Expect = 2e-12
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIK 227
VK + Q E A+ + H+ TS+DI + L L++A++ ++ P +D+L
Sbjct: 84 VKQLT---AQVAARDAEAAR---YVHWGATSQDIIDTGLVLQLRDALD-LLEPDLDRLCD 136
Query: 228 ALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE---IMGKFAG 284
AL +A + M+ RT Q A P TLG + + + L R RQ ++ + ++ +F G
Sbjct: 137 ALATLAARHRATPMVGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRALVLQFGG 196
Query: 285 AVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF--NPYVTQIETHDYMAKLFYAFVRFNNI 342
A G L++ + P + + L L+ P+ TQ D +A+ A
Sbjct: 197 AAGT----LASLGEQALP-VAQALAAELQLALPALPWHTQ---RDRIAEFASALGLLAGT 248
Query: 343 LIDFDRDVWGYISLAYFKQVTKAGEI---------GSSTMPHKVNPI 380
L RDV SL Q T+ GE+ GSSTMPHK NP+
Sbjct: 249 LGKIARDV----SL--LMQ-TEVGEVFEPAAAGKGGSSTMPHKRNPV 288
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 67.8 bits (166), Expect = 3e-12
Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 50/247 (20%)
Query: 157 VKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINK 216
+ IE HDV A FL + + + + H TS D+ + AL L +++
Sbjct: 59 ILEIEAEVRHDVIA---FLTNVNEYVGDAGR---YIHLGMTSSDVLDTGLALQLVASLD- 111
Query: 217 VMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG-------KEISVFAIRLGRE 269
++ ++ LI+A+ A+++ N M+ R+HG A P T G E RL R
Sbjct: 112 LLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLVRL 171
Query: 270 RQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI---ETH 326
R++I+ +G+ +GAVG Y A D P++ + LGL + TQ+ + H
Sbjct: 172 REDIA----VGQISGAVGTY-----ANTD---PRVEAITCQKLGLKPDTASTQVISRDRH 219
Query: 327 -DYMAKLFYAFV-----RFNNILIDFDR-DVWGYISL---AYFKQVTKAGEIGSSTMPHK 376
+Y+ L A V RF + + R DV L YF + G+ GSS MPHK
Sbjct: 220 AEYVQTL--ALVGASLERFATEIRNLQRTDV-----LEVEEYFAK----GQKGSSAMPHK 268
Query: 377 VNPIDFE 383
NPI E
Sbjct: 269 RNPIRSE 275
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 67.0 bits (164), Expect = 5e-12
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 33/236 (13%)
Query: 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFP 220
E+ HDV A + C P A ++ H TS + + + +++A++ ++ P
Sbjct: 65 EKKLRHDVMAHVHAFGLLC---PAAAGII---HLGATSCFVTDNTDLIQIRDALD-LILP 117
Query: 221 VMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMG 280
+ +I L E A + ++ L TH QPA TT+GK ++ L + + + ++
Sbjct: 118 KLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDL 177
Query: 281 KFAGA---VGNYNAHLSAYPDVNWPQITEDFVKSLG------LSFN---PYVTQIETHDY 328
+F G G + L + + D V++L F P Q +
Sbjct: 178 RFRGVKGTTGTQASFLDLF------EGDHDKVEALDELVTKKAGFKKVYPVTGQTYSRKV 231
Query: 329 MAKLFYAFVRFNNILIDFDRDVWGYISL-AYFKQVTK---AGEIGSSTMPHKVNPI 380
+ A D I L A K+V + G+IGSS MP+K NP+
Sbjct: 232 DIDVLNALSSLGATAHKIATD----IRLLANLKEVEEPFEKGQIGSSAMPYKRNPM 283
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 58.1 bits (141), Expect = 4e-09
Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 40/182 (21%)
Query: 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQV----- 276
++ LI+A AK+ A+I + RT Q A P TLG+E FA+ L + + I +
Sbjct: 165 LEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLL 224
Query: 277 EI-MGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFY 334
E+ +G A+G NA Y + + + GL P IE
Sbjct: 225 EVNLG--GTAIGTGINAP-KGYI----ELVVKKLAEVTGLPLVPAENLIEATQDTG---- 273
Query: 335 AFVRFNNIL---------IDFDRDVWGYISLAYFKQVTKAGEI-------GSSTMPHKVN 378
AFV + L I D + L EI GSS MP KVN
Sbjct: 274 AFVMVSGALKRLAVKLSKICND------LRLLSSGPRAGLNEINLPAVQAGSSIMPGKVN 327
Query: 379 PI 380
P+
Sbjct: 328 PV 329
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 52.5 bits (127), Expect = 2e-07
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 42/183 (22%)
Query: 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQV----- 276
+ L +A A++ A++ + RT Q A P TLG+E +A L R+R I +
Sbjct: 159 LAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLR 218
Query: 277 EI-MGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE-THDYMAKLF 333
E+ +G A+G NA Y + + E + GL I+ T +
Sbjct: 219 EVNLG--GTAIGTGINAPP-GYIE----LVVEKLSEITGLPLKRAENLIDATQN-TD--- 267
Query: 334 YAFVRFNNIL---------IDFDRDVWGYISLAYFKQVTKAGEI-------GSSTMPHKV 377
AFV + L I D + L GEI GSS MP KV
Sbjct: 268 -AFVEVSGALKRLAVKLSKIAND------LRLLSSGPRAGLGEINLPAVQPGSSIMPGKV 320
Query: 378 NPI 380
NP+
Sbjct: 321 NPV 323
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 50.6 bits (122), Expect = 9e-07
Identities = 55/195 (28%), Positives = 74/195 (37%), Gaps = 50/195 (25%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRER 270
A+ + + P + LI AL A + +I + RTH Q A+P TLG+E S +A + R
Sbjct: 151 ALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIAR 210
Query: 271 -----QEISQVEIMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSL----GLSFNP-- 318
+ ++ + G AVG NAH P E L GL F
Sbjct: 211 IEAALPRLYELALGGT---AVGTGLNAH---------PGFAEKVAAELAELTGLPFVTAP 258
Query: 319 -YVTQIETHDYMAKLFYAF----VRFNNILIDFDRDVW---------GYISLAYFKQVTK 364
+ HD + + A V I D R W G +SL
Sbjct: 259 NKFEALAAHDALVEASGALKTLAVSLMKIANDI-R--WLGSGPRCGLGELSLP------- 308
Query: 365 AGEIGSSTMPHKVNP 379
E GSS MP KVNP
Sbjct: 309 ENEPGSSIMPGKVNP 323
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 50.5 bits (122), Expect = 9e-07
Identities = 57/200 (28%), Positives = 75/200 (37%), Gaps = 60/200 (30%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ + + P +++L AL A++ A+I + RTH Q A P TLG+E S +A +L R+
Sbjct: 150 ALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIAR 209
Query: 273 ISQVEI------MGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSL----GLSFNP--- 318
I +G AVG NA P E L GL F
Sbjct: 210 IEAALERLRELNLG--GTAVGTGLNAP---------PGYAEKVAAELAELTGLPFVTAPN 258
Query: 319 --YVTQIETHDYMAKLFYAFVRFNNIL---------IDFD--------RDVWGYISLAYF 359
T HD A V + L I D R G I+L
Sbjct: 259 LFEATA--AHD-------ALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLP-- 307
Query: 360 KQVTKAGEIGSSTMPHKVNP 379
A + GSS MP KVNP
Sbjct: 308 -----ANQPGSSIMPGKVNP 322
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 49.9 bits (120), Expect = 2e-06
Identities = 60/272 (22%), Positives = 99/272 (36%), Gaps = 67/272 (24%)
Query: 136 EEAKSYLQGLID--------GFNMDDALEVKNIERVTNHDV-KAVEYFLKQKCQSQPEIA 186
EEA L+GL + F +D E DV A+E L ++ ++
Sbjct: 55 EEAAKILEGLEELLEEIRAGKFELDPDDE----------DVHTAIEARLIERI---GDVG 101
Query: 187 KVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTH 246
L H + D L L++ + ++ ++ L KAL ++A+++A M TH
Sbjct: 102 GKL---HTGRSRNDQVATDLRLWLRDKLLEL-LELIRILQKALLDLAEEHAETVMPGYTH 157
Query: 247 GQPASPTTLGKEISVFAIRLGRERQEISQV-EIM-------GKFAGAVGNYNAHLSAYPD 298
Q A P T + +A L R+ + + + + G AG + +P
Sbjct: 158 LQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAG---------TPFP- 207
Query: 299 VNWPQITEDFVKSLGLS---FNPYVTQ------IETHDYMAKLFYAFVRFNNILIDFDRD 349
++ + E LG N +E A + R LI +
Sbjct: 208 IDRERTAEL----LGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSP 263
Query: 350 VWGYISL--AYFKQVTKAGEIGSSTMPHKVNP 379
+G+I L + T GSS MP K NP
Sbjct: 264 EFGFIELPDEF---ST-----GSSIMPQKKNP 287
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 49.0 bits (117), Expect = 3e-06
Identities = 52/196 (26%), Positives = 75/196 (38%), Gaps = 44/196 (22%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
AI + P ++ L K L +K+ A+I + RTH Q A+P TLG+E S + +L +
Sbjct: 152 AIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLER 211
Query: 273 I-------SQVEIMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSL----GLSFNP-- 318
I ++ I G AVG N H P E + + GL F
Sbjct: 212 IAYSLPHLYELAIGGT---AVGTGLNTH---------PGFDEKVAEEIAKETGLPFVTAP 259
Query: 319 -YVTQIETHDYMAKLFYAFVRFNNILIDFDRDV-W---------GYISLAYFKQVTKAGE 367
+ HD + + A L+ D+ W G + + E
Sbjct: 260 NKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFIP-------ENE 312
Query: 368 IGSSTMPHKVNPIDFE 383
GSS MP KVNP E
Sbjct: 313 PGSSIMPGKVNPTQCE 328
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 48.4 bits (116), Expect = 4e-06
Identities = 55/196 (28%), Positives = 79/196 (40%), Gaps = 50/196 (25%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
A+ + P + LIK L A++ A++ + RTH Q A+P TLG+E S +A + E
Sbjct: 153 LAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALE 212
Query: 270 RQE-----ISQVEIMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSL----GLSFNP- 318
R E + ++ I G AVG NAH P+ E + L GL F
Sbjct: 213 RIEASLPHLYELAIGGT---AVGTGLNAH---------PEFGEKVAEELAELTGLPFVTA 260
Query: 319 --YVTQIETHDYMAKLFYAFVRFNNILIDFDR---DV-W---------GYISLAYFKQVT 363
+ HD + + A + + + D+ W G I L
Sbjct: 261 PNKFEALAAHDALVEASGA---LRTLAVSLMKIANDIRWLGSGPRCGLGEIEL------- 310
Query: 364 KAGEIGSSTMPHKVNP 379
E GSS MP KVNP
Sbjct: 311 PENEPGSSIMPGKVNP 326
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 47.7 bits (114), Expect = 6e-06
Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 23/202 (11%)
Query: 190 EFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQP 249
HF TS+D+ + + L LK A ++++ + LI L + +++ T Q
Sbjct: 100 AHVHFGATSQDVIDTSLMLRLK-AASEILAARLGALIARLDALEATFGQNALMGHTRMQA 158
Query: 250 ASPTTLGKEISVFAIRLGRERQEISQVEIMG---KFAGAVGNYNAHLSAYPDVNWPQITE 306
A P T+ ++ + L R R + + +F GA G L +
Sbjct: 159 AIPITVADRLASWRAPLLRHRDRLEALRADVFPLQFGGAAGT----LEKLGG-KAAAVRA 213
Query: 307 DFVKSLGLSFNPYVTQIE-THDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQ---- 361
K LGL P Q D++A + L F +D+ A Q
Sbjct: 214 RLAKRLGLEDAP---QWHSQRDFIADFAHLLSLVTGSLGKFGQDI------ALMAQAGDE 264
Query: 362 VTKAGEIGSSTMPHKVNPIDFE 383
++ +G GSS MPHK NP+ E
Sbjct: 265 ISLSGGGGSSAMPHKQNPVAAE 286
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 47.9 bits (115), Expect = 7e-06
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKAL 229
A+E L ++ ++ L H + D L L++A+ +++ ++D L +AL
Sbjct: 65 AIERRLIERI---GDVGGKL---HTGRSRNDQVATDLRLYLRDALLELLELLLD-LQRAL 117
Query: 230 CEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQ 271
+ A+++A+ M TH Q A P T G + +A L R+ +
Sbjct: 118 LDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLE 159
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 47.2 bits (112), Expect = 1e-05
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 32/206 (15%)
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
+S D A + +A+++ + P + +L L E + +A + RTH A+P T G
Sbjct: 137 SSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFG 196
Query: 257 KEISVFAIRLGRERQEISQV-----------EIMGK-------FAGAVGNYNAHLSAYPD 298
+E+S F +L + I +G FA A+ A LS P
Sbjct: 197 QELSAFVAQLDYAERAIRAALPAVCELAQGGTAVGTGLNAPHGFAEAIAAELAALSGLPF 256
Query: 299 VNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAY 358
V P K L+ + + + + L A ++ N D + G A
Sbjct: 257 VTAPN------KFAALAGHEPLVSL--SGALKTLAVALMKIAN-----DLRLLGSGPRAG 303
Query: 359 FKQVT-KAGEIGSSTMPHKVNPIDFE 383
+V A E GSS MP KVNP E
Sbjct: 304 LAEVRLPANEPGSSIMPGKVNPTQCE 329
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 46.3 bits (111), Expect = 2e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE 277
+++L +A AK+ A+I + RT Q A P TLG+E +A+ L +R+ + +
Sbjct: 166 LEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAA 221
Score = 29.7 bits (68), Expect = 3.7
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
EI GSS MP KVNP
Sbjct: 309 NEINLPAVQAGSSIMPGKVNP 329
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 45.5 bits (109), Expect = 4e-05
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEIS--VFAIRLGRE 269
AI + + P ++ L L A++ A+I + RTH Q A+P TLG+E S + G E
Sbjct: 154 LAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIE 213
Query: 270 R 270
R
Sbjct: 214 R 214
Score = 30.1 bits (69), Expect = 2.5
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GEI GSS MP KVNP
Sbjct: 307 GEISLPENEPGSSIMPGKVNP 327
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 45.1 bits (107), Expect = 5e-05
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 52/199 (26%)
Query: 214 INKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIR----LGRE 269
I+ + P + +L ++L + + +I + RTH Q A P TLG+E S +A + L R
Sbjct: 148 IHSRLIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRV 207
Query: 270 RQEISQVEIMGKFAGAVGN-YNAHLSAYPDVNWPQITEDFVKSLGLSFN-PYVT---QIE 324
+ + ++ + + AVG N E ++ P+VT + E
Sbjct: 208 QCTLPRLYELAQGGTAVGTGLNTK---------KGFDEKIAAAVAEETGLPFVTAPNKFE 258
Query: 325 ---THDYMAKLFYAFVRFNNIL---------IDFD--------RDVWGYISLAYFKQVTK 364
HD AFV + L I D R G ++L
Sbjct: 259 ALAAHD-------AFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLP------- 304
Query: 365 AGEIGSSTMPHKVNPIDFE 383
E GSS MP KVNP E
Sbjct: 305 ENEPGSSIMPGKVNPTQCE 323
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 43.0 bits (102), Expect = 2e-04
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAI-------RLGRERQEIS 274
M L E A + ++ + RT Q A P TLG+E S +A R+ + R+ +
Sbjct: 164 MGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLY 223
Query: 275 QVEIMGKFAGAVGN-YNAH 292
+V +G AVG NA
Sbjct: 224 EVN-LG--GTAVGTGLNAD 239
Score = 28.8 bits (65), Expect = 5.8
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 7/22 (31%)
Query: 366 GEI-------GSSTMPHKVNPI 380
GEI GSS MP KVNP+
Sbjct: 307 GEINLPAVQPGSSIMPGKVNPV 328
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 43.1 bits (102), Expect = 2e-04
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 49/223 (21%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLG 267
L L++ + ++ + L AL E+A+ + M TH Q A P TL + +A L
Sbjct: 117 LYLRDHVLEL-AEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLL 175
Query: 268 RERQEISQVEIM----------GKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFN 317
R+ + + + + G AG + +P I +++ L L F+
Sbjct: 176 RDYERL--QDALKRVNVSPLGSGALAG---------TGFP------IDREYLAEL-LGFD 217
Query: 318 PYVTQ----IETHDYMAKLFYAFV-------RFNNILIDFDRDVWGYISLAYFKQVTKAG 366
+ D++ +L + RF LI + +G++ L
Sbjct: 218 AVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVEL------PDEF 271
Query: 367 EIGSSTMPHKVNPIDFENSEGNLGKANEDLS--FLSMK-LPIS 406
GSS MP K NP E G G+ +L+ +++K LP++
Sbjct: 272 SSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLA 314
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 41.0 bits (96), Expect = 0.001
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 38/181 (20%)
Query: 222 MDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQ-----V 276
+++L + AK+ A+I + RT Q A P TLG+E F+I L E + I + +
Sbjct: 162 INQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLL 221
Query: 277 EI-MGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIE----THDYM-- 329
E+ +G A A+G L+ P+ + P + + + GL P IE Y+
Sbjct: 222 EVNLG--ATAIG---TGLNTPPEYS-PLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMV 275
Query: 330 -AKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAG--EI-------GSSTMPHKVNP 379
L V+ + I D L +AG EI GSS MP KVNP
Sbjct: 276 HGALKRLAVKMSKICND----------LRLLSSGPRAGLNEINLPELQAGSSIMPAKVNP 325
Query: 380 I 380
+
Sbjct: 326 V 326
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 40.5 bits (96), Expect = 0.002
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
L L++ I+++ +++ L KAL ++A+++A+ M TH Q A P T G
Sbjct: 121 LYLRDEIDEIAELLLE-LQKALLDLAEEHADTIMPGYTHLQRAQPVTFG 168
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 37.7 bits (88), Expect = 0.006
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 364 KAGEIGSSTMPHKVNPIDFEN 384
G+ GSS MPHK NPI E
Sbjct: 53 AKGQKGSSAMPHKRNPIGSER 73
>gnl|CDD|143297 cd05889, Ig1_DNAM-1_like, First immunoglobulin (Ig) domain of DNAX
accessory molecule 1 (DNAM-1, also known as CD226) and
similar proteins. Ig1_DNAM-1_like: domain similar to
the first immunoglobulin (Ig) domain of DNAX accessory
molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a
transmembrane protein having two Ig-like domains. It is
an adhesion molecule which plays a part in
tumor-directed cytotoxicity and adhesion in natural
killer (NK) cells and T lymphocytes. It has been shown
to regulate the NK cell killing of several tumor types,
including myeloma cells and ovarian carcinoma cells.
DNAM-1 interacts specifically with poliovirus receptor
(PVR; CD155) and nectin -2 (CD211), other members of the
Ig superfamily. DNAM-1 is expressed in most peripheral T
cells, NK cells, monocytes and a subset of B
lymphocytes.
Length = 96
Score = 31.0 bits (70), Expect = 0.33
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 218 MFPVMDKLIKALCEIAKDNA----NISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEI 273
++P LI+ K N NI++ +G G+ V+ + RE +
Sbjct: 8 VYPKTGVLIQV--SWTKHNGSHKENIAVYHPIYGMHIEDKYRGR---VYFLNSTREDMSL 62
Query: 274 SQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITE 306
S VG Y L YP +W ++ E
Sbjct: 63 S---FNNATEEDVGLYCCSLVTYPQGSWEKVIE 92
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 30.1 bits (68), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 418 LIFFNFDLWLCLLRQVPWYLKFK 440
+IF NF + CL R YLK++
Sbjct: 82 IIFLNFSRFNCLYRAFKRYLKYR 104
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 31.1 bits (70), Expect = 1.5
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 173 YFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEI 232
+FL + SQ + + H + D+ + + L+ + ++M + L +++ ++
Sbjct: 91 FFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHL-LLQESILQL 149
Query: 233 AKDNANISMLSRTHGQPASPTTLG 256
A D+ M + TH QPA PTT G
Sbjct: 150 AADHKETIMPAYTHTQPAQPTTFG 173
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 30.7 bits (69), Expect = 1.9
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 218 MFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQ-- 275
+ M + A+ ++ + RTH Q A P LG+E ++ L R+ + I Q
Sbjct: 166 LLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSR 225
Query: 276 ---VEI-MGKFAGAVGN--------------YNAHLSAYPDVNWPQITEDFVKSLGLSFN 317
E+ MG A AVG + A +S P V ED V +
Sbjct: 226 QHLYEVNMG--ATAVGTGLNADPEYIEAVVKHLAAISELPLVG----AEDLVDA------ 273
Query: 318 PYVTQIETHDYM---AKLFYAFVRFNNILIDFDRDVWG-YISLAYFKQVTKAGEIGSSTM 373
TQ T Y A L + + I D G + LA + + A + GSS M
Sbjct: 274 ---TQ-NTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVGLA--EIMLPARQPGSSIM 327
Query: 374 PHKVNPI 380
P KVNP+
Sbjct: 328 PGKVNPV 334
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 30.5 bits (69), Expect = 2.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
L ++AI+ + + L AL E+A+ N ++ + TH Q A P
Sbjct: 133 LWCRDAIDVIRKRI-KTLQVALVELAEKNVDLVVPGYTHLQRAQP 176
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 30.2 bits (68), Expect = 2.5
Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 38/253 (15%)
Query: 170 AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKAL 229
E +L ++ ++ VL A + DIN L L+EA ++ F + +L +AL
Sbjct: 493 LYEAYLIERLG--EDVGGVL---QTARSRNDINATTTKLHLREATSRA-FDALWRLRRAL 546
Query: 230 CEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQ------VEIMGKFA 283
A N + ++ + QPA P +LG + L RE + V +G A
Sbjct: 547 VFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHIDVCPLGAGA 606
Query: 284 GAVGNYNAHLSAYPDVNWPQITEDFVKS-LGLSFNPY--VTQIETHDYMAKLFYAFVRFN 340
G G + +P I +FV LG + + + D + A +
Sbjct: 607 GG-G------TTFP------IDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAIS 653
Query: 341 NIL--IDFDRDVWGYISLAYFKQVTKAGEI--GSSTMPHKVNPIDFENSEGNLGK---AN 393
+L + D +W + F V+ + GSS +P K NP E +G G A
Sbjct: 654 TVLSRLAQDLQLW---TTREFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGAL 710
Query: 394 EDLSFLSMKLPIS 406
S K P S
Sbjct: 711 ASASAALGKTPFS 723
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family
of related proteins that is plant specific.
Length = 313
Score = 29.1 bits (65), Expect = 4.8
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 1 MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLS-----NSY 55
SS S + SP S+ RRR TS + RR + + S N+
Sbjct: 1 RAASVSSGSTSGD---ASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS 57
Query: 56 SIRETTYKKVVNMSKVDSREFELSSLTALSPLDGR 90
S K S R S +SP G
Sbjct: 58 SSSSFGLSKQRPSSLSRGR----LSSRFVSPSRGS 88
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 28.7 bits (64), Expect = 6.2
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 4 GASSRVLSNNTLLRFSPESTFRRRYQ---VPVNPTSLNHHQRRFSNASFQLSNSYS 56
S+R+ S++ L F P S+ R+ V NP S +A S+SY+
Sbjct: 9 AFSTRLHSSSRRLNFPPPSSLSLRHSNSSVSSNPISSKAISLTRCDAV--SSSSYT 62
>gnl|CDD|220597 pfam10139, Virul_Fac, Putative bacterial virulence factor. Members
of this family of prokaryotic proteins include various
putative virulence factor effector proteins. Their exact
function is, as yet, unknown.
Length = 852
Score = 28.9 bits (65), Expect = 7.3
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRV-LVEIKWLLKLSKIPEVTEV---------- 131
PL +W + +LAP +S I R L + W +IPE+T+
Sbjct: 187 RQQPLAAHFWPEAIELAPRLS----IDDRARLFSLLW----GEIPELTDAYRHLAHALQR 238
Query: 132 PSFSEEAKSYLQGLIDGF 149
+EE + L L+DGF
Sbjct: 239 LGHAEELYAPLSALVDGF 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,714,047
Number of extensions: 2198820
Number of successful extensions: 1910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1860
Number of HSP's successfully gapped: 73
Length of query: 448
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,502,202
Effective search space: 2262766296
Effective search space used: 2262766296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.4 bits)