RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013159
(448 letters)
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 451 bits (1161), Expect = e-157
Identities = 202/333 (60%), Positives = 255/333 (76%)
Query: 77 ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
ELSSLTA+SP+DGRY KV L SEYGL+ FRV VE++WL KL+ + EVP+F+
Sbjct: 2 ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 61
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
+A YL ++ F+ +DA +K IER TNHDVKAVEYFLK+K PE+ V EF HFAC
Sbjct: 62 DAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 121
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
TSEDINNL+HALMLK A ++V+ P +LI L ++A +I +LSRT GQPA+P+T+G
Sbjct: 122 TSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIG 181
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
KE++ A R+ R+ ++++QVEI+GK GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 182 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 241
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
NPY TQIE HDY+A+LF RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 242 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 301
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
VNPIDFENSEGNLG +N L L+ KLP+SRWQ
Sbjct: 302 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ 334
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 446 bits (1148), Expect = e-155
Identities = 144/333 (43%), Positives = 202/333 (60%), Gaps = 5/333 (1%)
Query: 80 SLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAK 139
L +SP+DGRY +L+ + SE+ LI R++VE++WLL L++ ++ +
Sbjct: 4 HLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEEL--FFEKVTDHSV 61
Query: 140 SYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQ--SQPEIAKVLEFFHFACT 197
L + D VK IE TNHDVKAVEYF+K+K + + ++ K+ E+ H+ CT
Sbjct: 62 EVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCT 121
Query: 198 SEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGK 257
SEDINN+A+A LK +N V+ P ++K++ L ++A + +++ +LSRTHGQPAS TT GK
Sbjct: 122 SEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGK 181
Query: 258 EISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKS-LGLSF 316
E++ F R+ I +V++ KF GAVGN+NAH A D +W F+K L++
Sbjct: 182 EMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTY 241
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
+ Y TQI+ HDY+ +L R N LID D+W YIS K K E+GSSTMPHK
Sbjct: 242 SIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKVKEKEVGSSTMPHK 301
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
VNPIDFEN+EGNL AN S KLP SR Q
Sbjct: 302 VNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQ 334
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 444 bits (1142), Expect = e-154
Identities = 177/337 (52%), Positives = 244/337 (72%)
Query: 73 SREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVP 132
S L++L A+SP+DGRY +K + L+PY SE+ L Y+R++VEIKW L+ + EVP
Sbjct: 1 SNAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLAANDTIPEVP 60
Query: 133 SFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFF 192
+ +A+ +L LI FN +A ++K E+ TNHDVKAVEY+L+ K Q ++ + F
Sbjct: 61 ALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFI 120
Query: 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
HFACTSEDINNLA+ALM+K+AI +V+ P + +++ ++ + K +A+++MLSRTHGQPA+P
Sbjct: 121 HFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATP 180
Query: 253 TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312
TT+GKE+ F RL R +Q++++V I KF GAVGNYNAH++AYP+V+W + +FV SL
Sbjct: 181 TTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSL 240
Query: 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSST 372
GLSFN Y TQIE HD +A++ VR NNIL+D+ +D+W YISL YFKQ T A E+GSST
Sbjct: 241 GLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSST 300
Query: 373 MPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
MPHKVNPIDFEN+EGNLG +N + KL SR Q
Sbjct: 301 MPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQ 337
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 139 bits (352), Expect = 8e-37
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 32/244 (13%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
D + IE+ T HDV A F + P + + ++ H+ TS D+ + A + +LK+
Sbjct: 64 DIDRIYEIEKETRHDVVA---FTRA-VSETPALGEERKWVHYGLTSTDVVDTALSYILKQ 119
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A N+++ ++ + L AK++ M+ RTHG A PTT G ++ ++ + R +
Sbjct: 120 A-NEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVER 178
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
Q +GK +GAVG Y A++ P + + ++LGL P TQ D
Sbjct: 179 FKQAANTVRVGKLSGAVGTY-ANID-------PFVEKYVCENLGLEAAPISTQTLQRDRH 230
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI---------GSSTMPHKVNPI 380
A + ++ Q ++ E+ GSS MPHK NPI
Sbjct: 231 AHYMSTLALIATSIEKMAVEI-------RGLQKSETREVEEAFAKGQKGSSAMPHKRNPI 283
Query: 381 DFEN 384
EN
Sbjct: 284 GSEN 287
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 137 bits (346), Expect = 3e-36
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 33/244 (13%)
Query: 149 FNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHAL 208
+ D+ +ER T HD+ ++ L+QK + H+ TS DI + A AL
Sbjct: 58 VSADEVYR---LERETGHDILSLVLLLEQKSGC--------RYVHYGATSNDIIDTAWAL 106
Query: 209 MLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGR 268
+++ A + + L +A+ + M+ RTHGQ A P TLG + + + L
Sbjct: 107 LIRRA-LAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYI 165
Query: 269 ERQEISQVE--IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFV-KSLGLSFNPYVTQIET 325
++++ E I K GAVG + +V V + LGL + TQ+
Sbjct: 166 ACRQLALAEEFIRAKIGGAVGTMASWGELGLEV------RRRVAERLGLPHHVITTQVAP 219
Query: 326 HDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGE-----IGSSTMPHKVNPI 380
+ A L A + ++ + GE GSS MPHK NP
Sbjct: 220 RESFAVLASALALMAAVFERLAVEIREL-------SRPEIGEVVEGGGGSSAMPHKANPT 272
Query: 381 DFEN 384
E
Sbjct: 273 ASER 276
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 137 bits (347), Expect = 3e-36
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 33/244 (13%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
V IE+VT HD+ A F + +FFHF TS DI + A +L +++
Sbjct: 54 RPERVDEIEKVTKHDIIA---FCTSIAEQFTAETG--KFFHFGVTSSDIIDSALSLQIRD 108
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
+ + ++ L +L A++ I + R+HG A P + G++ + R ++
Sbjct: 109 S-MSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKD 167
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
+ + + +F+GAVGNY L+ + + LGL TQ+ D +
Sbjct: 168 LKDFQKDGLTVQFSGAVGNY-CILT-------TEDEKKAADILGLPVEEVSTQVIPRDRI 219
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNPI 380
AKL + + ++ L F + G+ GSSTMPHK NPI
Sbjct: 220 AKLISIHGLIASAIERLAVEI---RHLHRSDVFEVYEGFSK----GQKGSSTMPHKKNPI 272
Query: 381 DFEN 384
EN
Sbjct: 273 STEN 276
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 136 bits (345), Expect = 5e-36
Identities = 70/244 (28%), Positives = 105/244 (43%), Gaps = 34/244 (13%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
D K IE TNHDV A F++ E ++ FFH+ TS D+ + A++L L E
Sbjct: 54 DVELFKKIEEKTNHDVVA---FVEGIGSMIGEDSR---FFHYGLTSSDVLDTANSLALVE 107
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A K++ + + L E+A + + RTHG A PT+ G ++ + + R Q
Sbjct: 108 A-GKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQR 166
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
+ + GK +GAVGNY A++ P++ E + LGL P TQ+ D
Sbjct: 167 LERAIEEVSYGKISGAVGNY-ANVP-------PEVEEKALSYLGLKPEPVSTQVVPRDRH 218
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNPI 380
A + ++ L F + G+ GSS MPHK NPI
Sbjct: 219 AFYLSTLAIVAAGIERIAVEI---RHLQRTEVLEVEEPF----RKGQRGSSAMPHKKNPI 271
Query: 381 DFEN 384
E
Sbjct: 272 TCER 275
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 133 bits (336), Expect = 1e-34
Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 28/244 (11%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
D + + + L + E A + H+ TS+DI + A L ++
Sbjct: 67 DFDALATATGLAGNIAIPFVKQLTAIVKDADEDAA--RYVHWGATSQDILDTACILQCRD 124
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
A+ ++ + + + A+ + M+ RT Q A P TLG +++ +A R+
Sbjct: 125 AL-AIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDR 183
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
I+ ++ ++ + GAVG+ A L + E + K L L T D +
Sbjct: 184 INAIKARVLVAQLGGAVGSL-ASLQDQG----SIVVEAYAKQLKLG-QTACTWHGERDRI 237
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNPI 380
++ + RD + G GSSTMPHK NP+
Sbjct: 238 VEIASVLGIITGNVGKMARDW---SLMMQTEIAEVFEPT----AKGRGGSSTMPHKRNPV 290
Query: 381 DFEN 384
+
Sbjct: 291 AAAS 294
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 129 bits (327), Expect = 2e-33
Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 32/244 (13%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKE 212
+ +++ + + + ++Q E K + H+ T++DI + A L +++
Sbjct: 65 EMERLRDDTEIVGYPILP---LVEQLSAHAGEAGK---YLHWGATTQDIMDTATVLQIRD 118
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
+ ++ ++ + KAL +A+++ + M RTH Q A P T G + +V+ R
Sbjct: 119 GL-ALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAAR 177
Query: 273 ISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
+ ++ ++ +F+GA G A L + + + L L P +T D +
Sbjct: 178 LEEISPRVLVVEFSGASGTL-ASLGTRG----LDVQRELARELNLG-VPSITWHSARDAV 231
Query: 330 AKLFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNPI 380
A+ + L D+ + F SSTMP K NP+
Sbjct: 232 AETVQFLALVSGSLGKLAMDI---SIMMTTELGEVAEPF----VRHRGASSTMPQKQNPV 284
Query: 381 DFEN 384
E
Sbjct: 285 SCEL 288
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 125 bits (317), Expect = 8e-32
Identities = 64/326 (19%), Positives = 112/326 (34%), Gaps = 61/326 (18%)
Query: 85 SPLDGRYWSKVKDLAPYMSEYGLIY-----FRVLVEIKWL--------LKLSKIPEVTEV 131
S L RY + I + ++ W+ L L ++ +
Sbjct: 9 SVLSTRYCKN-----SPLVS---ILSETNKATLWRQL-WIWLAEAEKELGLKQVTQ---- 55
Query: 132 PSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEF 191
+A ++ D F+ ER HDV A + + C P A
Sbjct: 56 -----DAIDEMKSNRDVFDWPFIRS---EERKLKHDVMAHNHAFGKLC---PTAAG---I 101
Query: 192 FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPAS 251
H TS + + A + +++ + +I L + N + + RTH Q AS
Sbjct: 102 IHLGATSCFVQDNADLIAYRDS-IDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTAS 160
Query: 252 PTTLGKEISVFAIRLGRERQEISQV--EI-MGKFAGAVGNYNA--HLSAYPDVNWPQITE 306
T+GK ++A L Q +S+ ++ GA G ++ L A + + E
Sbjct: 161 LVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDE 220
Query: 307 DFVKSLGLSF-NPYVTQIETHDYMAKLFYAFVRF----NNILIDFDRDVWGYISLAYFKQ 361
K S Q + ++L ++ + D R L F +
Sbjct: 221 LVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDI-R------VLQAFGE 273
Query: 362 VT---KAGEIGSSTMPHKVNPIDFEN 384
+ + +IGSS MP+K NP+ E
Sbjct: 274 LLEPFEKDQIGSSAMPYKKNPMKSER 299
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 125 bits (316), Expect = 8e-32
Identities = 60/277 (21%), Positives = 101/277 (36%), Gaps = 36/277 (12%)
Query: 153 DALEVKNIERVTNHDVKAVEYFLKQKC-QSQPEIAKVLEFFHFACTSEDINNLAHALMLK 211
D + N + + L + PE + + H TS+D + L L+
Sbjct: 63 DTGALANAIATAGNSAIPLVKALGKVIATGVPEAER---YVHLGATSQDAMDTGLVLQLR 119
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQ 271
+A++ + + KL L + A +A+ ++ RT Q A+P TLG +++ L R RQ
Sbjct: 120 DALDLIE-ADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQ 178
Query: 272 EISQVE---IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDY 328
+ ++ ++ +F GA G+ A L + + E + L L+ P D
Sbjct: 179 RLQELRPRLLVLQFGGASGSL-AALGSKA----MPVAEALAEQLKLT-LPEQPWHTQRDR 232
Query: 329 MAKLFYAFVRFNNILIDFDRDVWGYISLA---------YFKQVTKAGEIGSSTMPHKVNP 379
+ + L F RD+ L G+ GSSTMPHK NP
Sbjct: 233 LVEFASVLGLVAGSLGKFGRDI---SLLMQTEAGEVFEPS----APGKGGSSTMPHKRNP 285
Query: 380 IDFENSEG--NLGKANEDLSFLSMKL----PISRWQV 410
+ G F +M + W
Sbjct: 286 VGAAVLIGAATRVPGLLSTLFAAMPQEHERSLGLWHA 322
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 123 bits (311), Expect = 7e-31
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 30/263 (11%)
Query: 135 SEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHF 194
++E ++ ++ + A E E+ HDV A + P+ A H
Sbjct: 80 TDEQIREMKSNLENIDFKMAAE---EEKRLRHDVMA---HVHTFGHCCPKAAG---IIHL 130
Query: 195 ACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTT 254
TS + + ++L+ A ++ P + ++I L + AK+ A++ L TH QPA TT
Sbjct: 131 GATSCYVGDNTDLIILRNA-LDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTT 189
Query: 255 LGKEISVFAIRLGRERQEISQV--EI-MGKFAGAVGNYNAHLSAYPDVNW--PQITEDFV 309
+GK ++ L + Q + +V ++ G G + L + + Q+ +
Sbjct: 190 VGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVT 249
Query: 310 KSLGLSF-NPYVTQIETHDYMAKLFYAFVRF----NNILIDFDRDVWGYISLAYFKQVT- 363
+ G Q T ++ + I D R LA K++
Sbjct: 250 EKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDI-R------LLANLKEMEE 302
Query: 364 --KAGEIGSSTMPHKVNPIDFEN 384
+ +IGSS MP+K NP+ E
Sbjct: 303 PFEKQQIGSSAMPYKRNPMRSER 325
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 120 bits (302), Expect = 1e-30
Identities = 55/292 (18%), Positives = 96/292 (32%), Gaps = 55/292 (18%)
Query: 126 PEVTEVPSFSEEAK--SYLQ------------GLID-----------GFNMDDALEVKNI 160
E+ E+ FS +A + ++ + D +++
Sbjct: 18 SEIIEL--FSAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHG 75
Query: 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFP 220
V ++Q + A + HF TS+D+ + + L LK A ++
Sbjct: 76 VAKDGVVVPE---LIRQMRAAVAGQAA--DKVHFGATSQDVIDTSLMLRLKMAAE-IIAT 129
Query: 221 VMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE--- 277
+ LI L ++A + + + T Q A T+ + + L R +
Sbjct: 130 RLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNG 189
Query: 278 IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFV 337
+F GA G L + D K LGL+ D +A+
Sbjct: 190 FALQFGGAAGTL-EKLGDNA----GAVRADLAKRLGLA--DRPQWHNQRDGIAEFANLLS 242
Query: 338 RFNNILIDFDRDVWGYISLA-----YFKQVTKAGEIGSSTMPHKVNPIDFEN 384
L F +D+ +A +G GSS MPHK NP++ E
Sbjct: 243 LVTGTLGKFGQDI---ALMAEIGSEIR----LSGGGGSSAMPHKQNPVNAET 287
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 50.7 bits (122), Expect = 5e-07
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
+++V+ P + KL AL +K+ A I + RTH Q A P TLG+E S + ++
Sbjct: 181 IEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMT 240
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
R + + I AG AVG N
Sbjct: 241 RIKAAMPRIYELAAGGTAVGTGLNTR 266
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GE+ GSS MP KVNP
Sbjct: 334 GELILPENEPGSSIMPGKVNP 354
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 50.7 bits (122), Expect = 6e-07
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
A + + P ++ L+ L + +KD I + RTH Q A+P TL +E S + I E
Sbjct: 175 LATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALE 234
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
R E + ++ G AVG N+
Sbjct: 235 RIEDALKKVYLLAQGGTAVGTGINSK 260
Score = 29.9 bits (68), Expect = 1.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GE+ GSS MP KVNP
Sbjct: 328 GELHLPENEPGSSIMPGKVNP 348
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 50.7 bits (122), Expect = 6e-07
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
I + P + L AL +K+ +I + RTH Q A+P TLG+E S + + G +
Sbjct: 179 LQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQ 238
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
R S + G AVG N
Sbjct: 239 RVAHSLKTLSFLAQGGTAVGTGLNTK 264
Score = 29.9 bits (68), Expect = 1.8
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
E+ GSS MP KVNP
Sbjct: 332 HELMLPENEPGSSIMPGKVNP 352
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 50.6 bits (122), Expect = 6e-07
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
A+ K + P + L + L E ++ A+I + RT+ Q A+P TLG+EIS + + +
Sbjct: 154 LALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLK 213
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
E S + G AVG N H
Sbjct: 214 HIEYSLPHVAELALGGTAVGTGLNTH 239
Score = 29.8 bits (68), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GEI GSS MP KVNP
Sbjct: 307 GEISIPENEPGSSIMPGKVNP 327
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 50.2 bits (121), Expect = 8e-07
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
A+++ ++P ++ LI+ A+ I + RTH A P TLG+EI +A ++
Sbjct: 154 LALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLA 213
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
+ + + G AVG NAH
Sbjct: 214 AVKEMEKGLYNLAIGGTAVGTGLNAH 239
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GEI GSS MP KVNP
Sbjct: 307 GEITIPANEPGSSIMPGKVNP 327
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 49.9 bits (120), Expect = 9e-07
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA--IRLGRE 269
EA + P + +L AL A D + RTH A P TLG+E S +A I G E
Sbjct: 175 EAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIE 234
Query: 270 RQEISQVEIMGKFAG--AVGN-YNAH 292
R + G AVG NA
Sbjct: 235 RVRACLPRLGELAIGGTAVGTGLNAP 260
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
EI GSS MP KVNP
Sbjct: 329 AEIQLPDLQPGSSIMPGKVNP 349
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 47.5 bits (114), Expect = 5e-06
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 213 AINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQE 272
++ + + + + A + A + + RTH Q A P LG+E +A + R+ +
Sbjct: 155 SLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIER 214
Query: 273 ISQV-----EI-MGKFAGAVGN-YNAH 292
I+ +I MG A AVG NA
Sbjct: 215 IANTRNNLYDINMG--ATAVGTGLNAD 239
Score = 30.5 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
EI GSS MP KVNP
Sbjct: 307 SEIVLPARQPGSSIMPGKVNP 327
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 47.1 bits (113), Expect = 8e-06
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQ 271
++ K++ +++L + A + +I + RT Q A P TLG+E F+I L E +
Sbjct: 158 SSLIKLV-DAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVK 216
Query: 272 EISQV-----EI-MGKFAGAVGN-YNAH 292
I + E+ +G A A+G N
Sbjct: 217 NIQRTAELLLEVNLG--ATAIGTGLNTP 242
Score = 30.6 bits (70), Expect = 1.1
Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
EI GSS MP KVNP
Sbjct: 310 NEINLPELQAGSSIMPAKVNP 330
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 46.4 bits (111), Expect = 1e-05
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 212 EAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQ 271
+ N+V + +LI A ++ A + + RT Q A P TLG+E FA L +
Sbjct: 175 LSQNQVQ-TALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTA 233
Query: 272 EISQV-----EI-MGKFAGAVGN-YNAH 292
+ +V E+ +G A+G NA
Sbjct: 234 RLEEVAALFREVNLG--GTAIGTRINAS 259
Score = 30.6 bits (70), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 7/21 (33%)
Query: 366 GEI-------GSSTMPHKVNP 379
GEI GSS MP KVNP
Sbjct: 327 GEIRLPAVQPGSSIMPGKVNP 347
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 68/508 (13%), Positives = 138/508 (27%), Gaps = 154/508 (30%)
Query: 22 STFRRRYQVPVNPTSLNHHQR-RFSNASFQLSNSYSI-RETTYKKVVNMSKVDSREFEL- 78
S + + P T + QR R N + Q+ Y++ R Y K+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 79 ---------SSLTALSPLDGR---------YWSKVKDLAPYMSEYGLIYFRVLVEIKWLL 120
+ + L + +W +K+ S ++E+ L
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN---CNSP------ETVLEMLQKL 205
Query: 121 KLSKIPEVTEVPSFS-------EEAKSYLQGLIDGFNMDDALEV-KNIERVTNHDVKAVE 172
P T S ++ L+ L+ ++ L V N++ + KA
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAWN 260
Query: 173 YFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCE- 231
F C K+L T+ L A +D L
Sbjct: 261 AF-NLSC-------KIL------LTTRFKQV---TDFLSAATTTH--ISLDHHSMTLTPD 301
Query: 232 -----IAKD-NANISMLSR--THGQPASPTTLGKEISVFAIRLGRERQ-EISQV-EIMGK 281
+ K + L R P + + + I + ++ I+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 282 FAGAV------GNYNAHLSAYP-DVN---------WPQITEDFV---------KSLGLSF 316
+ ++ LS +P + W + + V SL +
Sbjct: 362 SLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEK 419
Query: 317 NPYVTQIETHD-YM-------------AKL--FYAFVR---FNNILIDFDRDVWGYISLA 357
P + I Y+ + Y + ++++ + + Y +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG 478
Query: 358 Y-FKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKL--PISRWQVRSNL 414
+ K + + + F L D FL K+ + W ++
Sbjct: 479 HHLKNIEHPERM--TLFRMV-----F------L-----DFRFLEQKIRHDSTAWNASGSI 520
Query: 415 TLLLIFFNFDLWLCLLRQVPWYLKFKSD 442
L L+Q+ +Y + D
Sbjct: 521 ------------LNTLQQLKFYKPYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 58/371 (15%), Positives = 103/371 (27%), Gaps = 128/371 (34%)
Query: 100 PYMSEYGLIYFRVLV-EIKWL----LK---LSKIPEVTEVPSFSEEAKS-------YLQG 144
P +G + +LV + L+ +PE TE + +E + +L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-- 65
Query: 145 LIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC-TSEDINN 203
G+ V V + L L F DI+
Sbjct: 66 ---GYVSS---------LVEPSKVGQFDQVLN----------LCLTEFENCYLEGNDIHA 103
Query: 204 LAHALMLKEAINKVMFPVMDKLIKA---LCEIAK---DNANISMLSRTHGQPASPTTLGK 257
LA L N +LIK +AK D + S L R A
Sbjct: 104 LAAKL---LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR-----AVGE---G 152
Query: 258 EISVFAIRLG------------RERQEISQ------VEIMGK----FAGAVGNYNAHLSA 295
+ AI G R+ + ++ + + +
Sbjct: 153 NAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 296 YPDV-NW---PQIT--EDFVKSLGLSFNP---------YVTQIETHDY----MAKLFY-A 335
++ W P T +D++ S+ +S P YV + + + A
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 336 FVRFNNILI-----------DFDRDVWGYISLAYFKQVTKAGEIG--------SSTMPHK 376
++ F V I++ +F IG ++++P
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--------IGVRCYEAYPNTSLPPS 322
Query: 377 VNPIDFENSEG 387
+ EN+EG
Sbjct: 323 ILEDSLENNEG 333
Score = 33.5 bits (76), Expect = 0.19
Identities = 82/509 (16%), Positives = 151/509 (29%), Gaps = 192/509 (37%)
Query: 7 SRVLSNN---TL---LRFSPESTFRRRYQVPVN----------PTSLNHHQRRFSNAS-- 48
+ L N L L ++T + ++ N P + F
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 49 -------F--Q-LSNSY--SIRE--TTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSK 94
F Q ++ Y +R+ TY +V + LS L + + +++
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 95 VKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV---TEVP-SFSEEAKSYLQGLID--- 147
++ ++WL S P+ +P S L G+I
Sbjct: 212 GLNI-----------------LEWLENPSNTPDKDYLLSIPISCP------LIGVIQLAH 248
Query: 148 --------GFNMDDALEVKNIERVTNHD---VKAV--------EYFLKQKCQSQPEIAKV 188
GF + ++ T H V AV E F + K
Sbjct: 249 YVVTAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETDSWESFFVS-------VRKA 299
Query: 189 LEF-FHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHG 247
+ F EA +P L ++ E + +N G
Sbjct: 300 ITVLFFIGVRC------------YEA-----YPNTS-LPPSILEDSLEN--------NEG 333
Query: 248 QPASPTTLGKEISVFAIR-LGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDV-----NW 301
P SP + +I L +E QV+ + N+HL A V N
Sbjct: 334 VP-SP--------MLSISNLTQE-----QVQ---DYVNKT---NSHLPAGKQVEISLVNG 373
Query: 302 PQITEDFV-----KSL-GLSFN-------PYVTQIET-HDYMAKLFYAFVRFNNI----- 342
+ + V +SL GL+ + Q F RF +
Sbjct: 374 AK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS--NRFLPVASPFH 428
Query: 343 ---LID----FDRDVWGYISLAYFKQVTKAGEIGSSTMP--HKVNPIDFENSEGNLGKAN 393
L+ ++D+ ++++ A +I +P + D G++ +
Sbjct: 429 SHLLVPASDLINKDLVK-NNVSF-----NAKDIQ---IPVYDTFDGSDLRVLSGSI---S 476
Query: 394 EDLSFLSMKLPISRWQ--VRSNLTLLLIF 420
E + ++LP+ +W+ + T +L F
Sbjct: 477 ERIVDCIIRLPV-KWETTTQFKATHILDF 504
Score = 31.6 bits (71), Expect = 0.76
Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 51/137 (37%)
Query: 274 SQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF------NPYVTQIETH- 326
SQ + MG Y +A DV W + F + G S NP + H
Sbjct: 1626 SQEQGMGMDL-----YKTSKAA-QDV-WNRADNHFKDTYGFSILDIVINNP--VNLTIHF 1676
Query: 327 ----------DYMAKLF----YAFVRFNNILIDFDRDVWGYI------------------ 354
+Y A +F ++ I + + Y
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 355 ---SLAYFKQVTKAGEI 368
A F+ + G I
Sbjct: 1737 TLMEKAAFEDLKSKGLI 1753
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 36.0 bits (84), Expect = 0.020
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
L +K +++ + ++ LIK L E A ++ + TH Q A P
Sbjct: 125 LFMKNSLSIISTHLLQ-LIKTLVERAAIEIDVILPGYTHLQKAQPIRWS 172
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 35.2 bits (82), Expect = 0.039
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
L K+ +++++ +L AL E A++N + M TH Q A P T
Sbjct: 119 LWCKDTVSELL-TANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFA 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.050
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 28/57 (49%)
Query: 269 ERQEISQVEIMGKFAGAVGNYNAHLSAY-PDVNWPQITEDFVKSLGLSFNPYVTQIE 324
E+Q + +++ A L Y D + P L+ +E
Sbjct: 18 EKQALKKLQ-------------ASLKLYADD-SAP----------ALAIK---ATME 47
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 31.4 bits (72), Expect = 0.70
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 208 LMLKEAINKVMFPVMDKLIKALCEIAKDNANIS--MLSRTHGQPASPTTLG 256
L L+ AI++++ ++ L + L A+ + + + TH Q A P L
Sbjct: 120 LYLRGAIDELL-ALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLA 169
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 29.3 bits (66), Expect = 2.0
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 318 PYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKA 365
P +T+ E ++ K+ R D D G+IS ++ +
Sbjct: 2 PEITESERAYHLRKMKTRMQRV-----DVTGD--GFISREDYELIAVR 42
>4ei0_A Uncharacterized hypothetical protein; PF14725 family protein,
DUF4466, structural genomics, joint for structural
genomics, JCSG; 2.00A {Parabacteroides merdae}
Length = 312
Score = 29.4 bits (65), Expect = 2.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 241 MLSRTHGQPASPTTLGKEIS-VFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPD 298
+ R+ P +P +G EI +A+ + E ++S +++ AGA G Y S Y +
Sbjct: 20 CIKRS--LPVAPNIVGNEIEFAYAMAIPNELGKLSSAQVVSSIAGATGTYFDPNSYYTN 76
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 28.7 bits (64), Expect = 5.1
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 132 PSFSEEAKSYLQGLID-------GFNMDDALEVKN 159
SFS E +S L+GL+ G A EVK
Sbjct: 415 DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 28.6 bits (64), Expect = 5.5
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 132 PSFSEEAKSYLQGLID-------GFNMDDALEVKN 159
FS +A+S L+ G A EVK
Sbjct: 410 ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 27.9 bits (62), Expect = 8.7
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 307 DFVKSLGLSFNPYVTQIE---THDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYF 359
D+++ LG VT I+ Y R + WGY +YF
Sbjct: 303 DYLQKLG------VTHIQLLPVLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYF 352
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 27.8 bits (62), Expect = 9.5
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 132 PSFSEEAKSYLQGLID-------GFNMDDALEVKN 159
FS +K + + L+ GF ++
Sbjct: 414 DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,765,917
Number of extensions: 403502
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 63
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)