RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013159
(448 letters)
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 140 bits (352), Expect = 1e-37
Identities = 62/319 (19%), Positives = 112/319 (35%), Gaps = 26/319 (8%)
Query: 90 RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGF 149
RY + + +E + VE+ ++ + + +
Sbjct: 3 RY--SLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPK-----GVTERIRNNAKI-- 53
Query: 150 NMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALM 209
D K IE TNHDV A + I + FFH+ TS D+ + A++L
Sbjct: 54 ---DVELFKKIEEKTNHDVVAFVEGIGSM------IGEDSRFFHYGLTSSDVLDTANSLA 104
Query: 210 LKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRE 269
L EA ++ + + L E+A + + RTHG A PT+ G ++ + + R
Sbjct: 105 LVEAGKILLESLKEF-CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRN 163
Query: 270 RQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
Q + + + G + + P+V ++ +K P TQ+ D
Sbjct: 164 VQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLK-----PEPVSTQVVPRDRH 218
Query: 330 AKLFYAFVRFNNILIDFDRDV--WGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEG 387
A + ++ + ++ + G+ GSS MPHK NPI E G
Sbjct: 219 AFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG 278
Query: 388 NLGKANEDLSFLSMKLPIS 406
+ + +
Sbjct: 279 LSRMMRAYVDPSLENIALW 297
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 138 bits (348), Expect = 3e-37
Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%)
Query: 103 SEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER 162
+E + VEI +++ ++ + E+ + + D + IE+
Sbjct: 7 TEENRFKAWLEVEILACEAWAELGDIPK-----EDVQKIRENA-----SFDIERINEIEQ 56
Query: 163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVM 222
T HDV A + + + + ++ H+ TS D+ + A + ++K+ N ++ +
Sbjct: 57 ETRHDVVAFTRAVSET------LGEERKWVHYGLTSTDVVDTALSYLIKQ-ANSILLQDL 109
Query: 223 DKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIM--- 279
+ ++ L AK++ M+ RTHG A PTT G +++++ + R + Q
Sbjct: 110 ENFVEILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWYEEMKRNLERFKQAASGVEF 169
Query: 280 GKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRF 339
GK +GAVG Y P + + LGL P TQ D A A
Sbjct: 170 GKMSGAVGTYANI--------NPFVESYVCEKLGLQPAPISTQTLQRDRHAHYMAAISLI 221
Query: 340 NNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLS 397
+ F ++ G ++ G+ GSS MPHK NPI EN G +
Sbjct: 222 ATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHML 281
Query: 398 FLSMKLPISRWQVRSNLTLLLIFFNFDLWLCL 429
+P + + + D + L
Sbjct: 282 TAYENVP-LWHERDISHSSAERIILPDATIAL 312
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 125 bits (315), Expect = 1e-32
Identities = 64/326 (19%), Positives = 119/326 (36%), Gaps = 28/326 (8%)
Query: 84 LSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQ 143
+SP D RY S+ ++ + +I + VE + L ++ + +
Sbjct: 2 VSPFDWRYGSE--EIRRLFTNEAIINAYLEVERALVCALEELGVAER-----GCCEKVNK 54
Query: 144 GLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINN 203
+ A EV +ER T HD+ ++ L+QK + H+ TS DI +
Sbjct: 55 ASVS------ADEVYRLERETGHDILSLVLLLEQKSGC--------RYVHYGATSNDIID 100
Query: 204 LAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA 263
A AL+ + + L +A+ + M+ RTHGQ A P TLG + + +
Sbjct: 101 TAWALL-IRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYY 159
Query: 264 IRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323
L ++++ E + +G ++++ ++ + LGL + TQ+
Sbjct: 160 YELYIACRQLALAEEFIR--AKIGGAVGTMASWGELGLEVRRR-VAERLGLPHHVITTQV 216
Query: 324 ETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFE 383
+ A L A + ++ G GSS MPHK NP E
Sbjct: 217 APRESFAVLASALALMAAVFERLAVEIRELSR--PEIGEVVEGGGGSSAMPHKANPTASE 274
Query: 384 NSEGNLGKANEDLSFLSMKLPISRWQ 409
+ ++ + +
Sbjct: 275 RIVSLARYVRAL-THVAFENVALWHE 299
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 105 bits (262), Expect = 3e-25
Identities = 55/293 (18%), Positives = 100/293 (34%), Gaps = 9/293 (3%)
Query: 145 LIDGFNMD-DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINN 203
L D F + + ++V + + + + + +S D
Sbjct: 85 LDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFP 144
Query: 204 LAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA 263
+ I + P + L AL +K+ +I + RTH Q A+P TLG+E S +
Sbjct: 145 TVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYV 204
Query: 264 IRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323
++ Q ++ F G +I E K GL F +
Sbjct: 205 QQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRF 264
Query: 324 E---THDYMAKLFYAFVRFNNILIDFDRDVWGYIS---LAYFKQVTKAGEIGSSTMPHKV 377
E HD + + A L +D+ S Y + + E GSS MP KV
Sbjct: 265 EALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKV 324
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLL 430
NP E + + + ++ +++ N+ ++ N + L+
Sbjct: 325 NPTQNEALTQVCVQVMGNNAAITFAGSQGQFE--LNVFKPVMIANLLNSIRLI 375
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 101 bits (251), Expect = 6e-24
Identities = 63/324 (19%), Positives = 107/324 (33%), Gaps = 17/324 (5%)
Query: 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI 146
D + + + S+ G + + E + V +
Sbjct: 4 FDAYFTAP--AMREIFSDRGRLQGMLDFEAALARAEASAGLVPH-----SAVAAIEAAC- 55
Query: 147 DGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAH 206
D I N + V+ K PE + + H TS+D +
Sbjct: 56 QAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAER---YVHLGATSQDAMDTGL 112
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
L L++A++ + + KL L + A +A+ ++ RT Q A+P TLG +++ L
Sbjct: 113 VLQLRDALDLIEAD-LGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGAL 171
Query: 267 GRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326
R RQ + ++ G + + L L P+ TQ
Sbjct: 172 TRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQ---R 228
Query: 327 DYMAKLFYAFVRFNNILIDFDRDV--WGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFEN 384
D + + L F RD+ + + G+ GSSTMPHK NP+
Sbjct: 229 DRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAV 288
Query: 385 SEGNLGKANEDLSFLSMKLPISRW 408
G + LS L +P
Sbjct: 289 LIGAATRVPGLLSTLFAAMPQEHE 312
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 91.7 bits (226), Expect = 1e-20
Identities = 55/317 (17%), Positives = 109/317 (34%), Gaps = 15/317 (4%)
Query: 87 LDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI 146
++ + D+ S+ L+ + V E+ +++ + + A +
Sbjct: 3 YASLFYQR--DVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQ-----SAATVIQRAAK 55
Query: 147 DGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAH 206
+ D + + + L + E A + H+ TS+DI + A
Sbjct: 56 TAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAA--RYVHWGATSQDILDTAC 113
Query: 207 ALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRL 266
L ++A+ V + + + A+ + M+ RT Q A P TLG +++ +A
Sbjct: 114 ILQCRDALAIVQ-NQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAF 172
Query: 267 GRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326
R+ I+ ++ A A + E + K L T
Sbjct: 173 KRDLDRINAIKARVLV--AQLGGAVGSLASLQDQGSIVVEAYAKQLK-LGQTACTWHGER 229
Query: 327 DYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFEN 384
D + ++ + RD + +A + T G GSSTMPHK NP+ +
Sbjct: 230 DRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAAS 289
Query: 385 SEGNLGKANEDLSFLSM 401
+ +S +
Sbjct: 290 VLAAANRVPALMSSIYQ 306
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 89.9 bits (222), Expect = 5e-20
Identities = 53/272 (19%), Positives = 92/272 (33%), Gaps = 7/272 (2%)
Query: 145 LIDGFNMDDALEVKNIERVTNHD-VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINN 203
D F + + N + V A + A + + +S D
Sbjct: 83 WDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFP 142
Query: 204 LAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFA 263
A + + A+++ ++P ++ LI+ A+ I + RTH A P TLG+EI +A
Sbjct: 143 TAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWA 202
Query: 264 IRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQI 323
+L + ++E G + + + GL F +
Sbjct: 203 AQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRF 262
Query: 324 E---THDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYF---KQVTKAGEIGSSTMPHKV 377
HD + + A L+ DV S Y + A E GSS MP KV
Sbjct: 263 AALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKV 322
Query: 378 NPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
NP E + + + ++ +Q
Sbjct: 323 NPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQ 354
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 70.3 bits (171), Expect = 1e-13
Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 9/273 (3%)
Query: 145 LIDGFNMD--DALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDIN 202
+D F +D ++ TN + + L + + + + + ++ D
Sbjct: 89 CMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAY 148
Query: 203 NLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVF 262
+ + ++ K++ +++L + A + +I + RT Q A P TLG+E F
Sbjct: 149 PTGFRIAVYSSLIKLV-DAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAF 207
Query: 263 AIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF---NPY 319
+I L E + I + + P P + + G
Sbjct: 208 SILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDL 267
Query: 320 VTQIETHDYMAKLFYAFVRFNNILIDFDRDV---WGYISLAYFKQVTKAGEIGSSTMPHK 376
+ + A R + D+ + + GSS MP K
Sbjct: 268 IEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAK 327
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
VNP+ E K + + ++M + Q
Sbjct: 328 VNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQ 360
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 62.1 bits (150), Expect = 5e-11
Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 17/296 (5%)
Query: 142 LQGLIDGFNMDD---ALEVKNIERVTNHDVKAVE----YFLKQKCQSQPEIAKVLEFFHF 194
++ G + D+ A+ +N ++ V L + + +
Sbjct: 74 ADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNK 133
Query: 195 ACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTT 254
+ +S D+ A + A+ K + P + L + L E ++ A+I + RTH Q A+P T
Sbjct: 134 SQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLT 193
Query: 255 LGKEISVFAIRLGRERQEISQ----VEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK 310
LG+EIS + L + I V + AVG Y ++
Sbjct: 194 LGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCA 253
Query: 311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYF---KQVTKAGE 367
+ N + + T D + + A L+ DV S + E
Sbjct: 254 PFVTAPNKF-EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE 312
Query: 368 IGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNF 423
GSS MP KVNP E + + ++ + + N+ ++ NF
Sbjct: 313 PGSSIMPGKVNPTQCEALTMLCCQVMGNDV--AINMGGASGNFELNVFRPMVIHNF 366
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 56.4 bits (135), Expect = 3e-09
Identities = 56/319 (17%), Positives = 85/319 (26%), Gaps = 39/319 (12%)
Query: 135 SEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVK-AVEYFLKQKCQSQPEIAKVLEFFH 193
+EE + L + D + I D+ VE L K + H
Sbjct: 50 AEEQAQLEEAL-NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQL------GKKLH 102
Query: 194 FACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPT 253
+ D L + + +L AL E A++N + M TH Q A P
Sbjct: 103 TGRSRNDQVATDLKLW-CKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPV 161
Query: 254 TLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLG 313
T + L R+ + + A + E LG
Sbjct: 162 TFAHWCLAYVEMLARDESRLQDALKR------LDVSPLGCGALAGTAYEIDREQLAGWLG 215
Query: 314 LSFNPYVTQIETHDYM--AKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVT--KAGEIG 369
+ + D +L A L F D + + V G
Sbjct: 216 FASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAED-LIFFNTGEAGFVELSDRVTSG 274
Query: 370 SSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNL-TLLLIFFNFDLWLC 428
SS MP K NP E G G +V+ L +++ L
Sbjct: 275 SSLMPQKKNPDALELIRGKCG------------------RVQGALTGMMMTLKGLPLAYN 316
Query: 429 LLRQVPWYLKFKSDLECLH 447
Q F + L
Sbjct: 317 KDMQEDKEGLFDALDTWLD 335
Score = 26.4 bits (57), Expect = 8.2
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 199 EDIN-NLAHALMLKEA--INKVMFPVMDKLIKALCEIAKD 235
+DI ++A + L + +L +AL + +D
Sbjct: 30 QDIVGSVAWSKALVTVGVLTA---EEQAQLEEALNVLLED 66
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 53.0 bits (126), Expect = 4e-08
Identities = 58/336 (17%), Positives = 110/336 (32%), Gaps = 26/336 (7%)
Query: 107 LIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNH 166
L + + + L K +T+ E + L GL ++ + + + ++
Sbjct: 18 LSEVDIQGSMAYAKALEKAGILTK-----TELEKILSGLEKI--SEEWSKGVFVVKQSDE 70
Query: 167 DVK-AVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKL 225
D+ A E LK+ +IA H + D L +K +++ + ++
Sbjct: 71 DIHTANERRLKELI---GDIAG---KLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQL- 123
Query: 226 IKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVF--AIRLGRERQEISQVEIMGKFA 283
IK L E A ++ + H Q A P + + A+ ER + I
Sbjct: 124 IKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRINVLPL 183
Query: 284 GAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNIL 343
G+ L ++ ++ +S N I D++ + L
Sbjct: 184 GSGALAGNPLDIDR-----EMLRSELEFASISLNSM-DAISERDFVVEFLSFATLLMIHL 237
Query: 344 IDFDRDVWGYISLAY-FKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGK--ANEDLSFLS 400
D+ Y + + F ++ A GSS MP K NP E G+ +
Sbjct: 238 SKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMV 297
Query: 401 MKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWY 436
+K S + +F D +L+
Sbjct: 298 LKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGV 333
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 49.5 bits (117), Expect = 4e-07
Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 19/260 (7%)
Query: 136 EEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVK-AVEYFLKQKCQSQPEIAKVLEFFHF 194
E L GL ++ + + D+ A E LK+ + H
Sbjct: 53 AEMDQILHGLDKV--AEEWAQGTFKLNSNDEDIHTANERRLKELIGAT------AGKLHT 104
Query: 195 ACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTT 254
+ D L +++ + + + +LI+ + + A+ ++ TH Q A P
Sbjct: 105 GRSRNDQVVTDLRLWMRQTCSTLSGL-LWELIRTMVDRAEAERDVLFPGYTHLQRAQPIR 163
Query: 255 LGKEISVF--AIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312
I A+ ER + I V + A + + +
Sbjct: 164 WSHWILSHAVALTRDSERLLEVRKRIN------VLPLGSGAIAGNPLGVDRELLRAELNF 217
Query: 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAY-FKQVTKAGEIGSS 371
G + D++A+ + L D+ Y + + F Q++ A GSS
Sbjct: 218 GAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSS 277
Query: 372 TMPHKVNPIDFENSEGNLGK 391
MP K NP E G+
Sbjct: 278 LMPRKKNPDSLELIRSKAGR 297
Score = 27.2 bits (59), Expect = 5.0
Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 199 EDI-NNLAHALMLKEA--INKVMFPVMDKLIKALCEIAKD 235
D+ + A++ L++A + K MD+++ L ++A++
Sbjct: 32 VDVQGSKAYSRGLEKAGLLTKA---EMDQILHGLDKVAEE 68
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 48.7 bits (115), Expect = 8e-07
Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 15/291 (5%)
Query: 149 FNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHAL 208
+ +I N + L + + + + ++ D A +
Sbjct: 88 VDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHI 147
Query: 209 MLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGR 268
+ +N+ + + + + A + A + + RTH Q A P LG+E +A + R
Sbjct: 148 AVLSLLNQ-LIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIAR 206
Query: 269 E--RQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETH 326
+ R ++ + GA + +TE K G ++
Sbjct: 207 DIERIANTRNNLYDINMGATAVGTGLNA--DPEYISIVTEHLAKFSGHPLRSAQHLVDAT 264
Query: 327 DYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI-------GSSTMPHKVNP 379
+I+ + L EI GSS MP KVNP
Sbjct: 265 QNTDCYTEVSSALKVCMINMSKIANDLR-LMASGPRAGLSEIVLPARQPGSSIMPGKVNP 323
Query: 380 IDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLL 430
+ E + + ++ ++ N+ ++FFN + ++
Sbjct: 324 VMPEVMNQVAFQVFGNDLTITSASEAGQF--ELNVMEPVLFFNLIQSISIM 372
>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter
heparinus (Flavobacterium heparinum) [TaxId: 984]}
Length = 310
Score = 27.9 bits (62), Expect = 2.3
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 100 PYMSEYGLIYFRVLVEIKWLLKLSKI----PEVTEVPSFSEEAKSYLQGLIDGFNMDDAL 155
+S YG ++ ++++ ++ + ++ + ++ I G MD +
Sbjct: 204 LQISSYGAVFITGVLKLANYVRDTPYALSTEKLAIFSKYYRDS---YLKAIRGSYMDFNV 260
Query: 156 EVKNIERVTNHDVKAVEYFLKQ 177
E + + R + KA + L
Sbjct: 261 EGRGVSRPDILNKKAEKKRLLV 282
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 27.1 bits (60), Expect = 5.0
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 161 ERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSE-DINNLAHALML 210
E+ TN +A+ + L + + + + C++ + LA
Sbjct: 160 EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGAT 210
>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 369
Score = 26.8 bits (59), Expect = 5.5
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 88 DGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLI- 146
DG + PY YG++ L ++ LL + S+ +S +
Sbjct: 224 DGSFIQHST--TPYTGSYGVVLLTGLSKLFSLLGGTAF-------EVSDPTRSIFFDAVE 274
Query: 147 DGF-------NMDDALEVKNIER--VTNHDVKA--VEYFLKQKCQSQPEIAKVLE 190
F M DA+ ++I R T +D+ A +E L P A
Sbjct: 275 GSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAMDPATAARWR 329
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 196
Score = 26.3 bits (57), Expect = 6.7
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 165 NHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFP---V 221
+ + LK + PE + + +I+ + + + V
Sbjct: 73 YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQV 132
Query: 222 MDKLIKALCEIAK 234
+ L L +I+
Sbjct: 133 LRFLTAFLVQISA 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,652,789
Number of extensions: 76962
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 24
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)