BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013160
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1
Length = 614
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 73/315 (23%)
Query: 8 KKRKRPIVRLAVL--LLSHSVLVSVICCTAGVFGLLLLPVLA--KNTYISENALMPGSAS 63
+K R IV + ++ +++ ++S++C G + +LP+ + TYISENALMP A
Sbjct: 5 EKLHRRIVDMGLVPRIIALLPVISMLCALFGFISIAILPMDGQYRRTYISENALMPSQAY 64
Query: 64 SMLSNQE---VSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLN 120
S E + IKE+ N+ S E + ++ ++ G +
Sbjct: 65 SYFRESEWNILRGYRSQIKEMVNMTS------MERNNLMGSWLQEFGTKT---------- 108
Query: 121 QFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTP-YNAVKGGVRE 179
+ EN YG G++ APRGDG EA+VL P +N+
Sbjct: 109 --------------AIYENEQ---YGETLYGVMHAPRGDGTEAMVLAVPWFNSDDEFNIG 151
Query: 180 TLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTE 239
+LG++ + F +R +K+II + +++ A + +W+ YHT +LD
Sbjct: 152 GAALGVSLARF--FSRWPVWSKNIIVVFSEN---PRAALRSWVEAYHT----SLD----- 197
Query: 240 TCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINI 299
G++ AA+VL + + + + I + NG++PNLDL+NI
Sbjct: 198 -----------------LTGGSIEAAVVLDYSSTEDFFEYVEISYDGLNGELPNLDLVNI 240
Query: 300 VHYLAVHRQGLRVKV 314
+ H +G++V +
Sbjct: 241 AISITEH-EGMKVSL 254
>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1
Length = 581
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 60/316 (18%)
Query: 15 VRLAVLLLSHSVLVSVICCTAGVFGLLLLPV--LAKNTYISENALMPGSASSMLSNQEVS 72
+R+ L H + + G+ + +LP + ++SE+AL+PG
Sbjct: 9 IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPG------------ 56
Query: 73 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPD 132
++N N T S A S+L A V + + L Q F+
Sbjct: 57 -------QVNTYFENRYSKTVSSSLTAANTWSHLDASVGTNTMYDDLEQ-----IFTAMG 104
Query: 133 SGVMQENST-----RSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAY 187
++N + G N + +RAPRGD E+++L P+ G E + +A
Sbjct: 105 LPTQKQNYSINIPGSEFNGSNFITTLRAPRGDATESLLLCVPWKDHIGQYNEA-GVALAI 163
Query: 188 SVFSLLTRVTWLAKDIIWLVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
S+ + +KDII ++ D YG + + ++ D TP
Sbjct: 164 SLLKYFQGWSLWSKDIILVIFDDPVYGPSSFLTSYF-DQTTP------------------ 204
Query: 247 NFESKISYGIR--RSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVH--Y 302
ISY RSG++ A L L + N D L + +A+NGQ+PNLDL N + +
Sbjct: 205 ----YISYTPLKIRSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTISRIF 260
Query: 303 LAVHRQGLRVKVEQFH 318
+ LR++ FH
Sbjct: 261 MQHFNYPLRLQGYDFH 276
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus
musculus GN=Gpaa1 PE=1 SV=3
Length = 621
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 52/296 (17%)
Query: 10 RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
R+R + R+ + L + + V+ AG+ F L P L + TY+SENA+ S+M+
Sbjct: 9 RRRALARIVLRL---NTPLCVLSYVAGIAWFLALAFPPLTQRTYMSENAM----GSTMVE 61
Query: 68 NQEV--SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPL 125
Q V A ++ P GA + + + M ++G +V F +L P
Sbjct: 62 EQFVGGDRARSFARDFAAHRKKP-GALPVAW--LERSMRSVGLEVYTQSFSRKL----PF 114
Query: 126 HFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGI 185
PD + + + G N GI+RAPR E++VL P + ++G+
Sbjct: 115 -----PD----ETHERYMVSGTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGL 162
Query: 186 AYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGN 245
++ + + AKDII+LV D + AWL YH +
Sbjct: 163 LLALAAHFRGQIYWAKDIIFLVTDH---DLLGTEAWLEAYH---------------DINV 204
Query: 246 NNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVH 301
+S G R+G + AA+ L ++ ++ +L + E NGQ+PNLDL+N+
Sbjct: 205 TGIQSSPLQG--RAGAIQAAVALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQ 256
>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo
sapiens GN=GPAA1 PE=1 SV=3
Length = 621
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 50/295 (16%)
Query: 10 RKRPIVRLAVLLLSHSVLVSVICCTAGV--FGLLLLPVLAKNTYISENALMPGSASSMLS 67
R+R + RL + L + + V+ AG+ F L+ P L + TY+SENA+ S+M+
Sbjct: 9 RRRALARLVLRL---NAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAM----GSTMVE 61
Query: 68 NQEVS-EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLH 126
Q + + H GA + + + M ++G +V F +L P
Sbjct: 62 EQFAGGDRARAFARDFAAHRKKSGALPVAW--LERTMRSVGLEVYTQSFSRKL----PF- 114
Query: 127 FFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIA 186
PD + + + G N GI+RAPR E++VL P + + ++G+
Sbjct: 115 ----PD----ETHERYMVSGTNVYGILRAPRAASTESLVLTVPCGSDS---TNSQAVGLL 163
Query: 187 YSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNN 246
++ + + AKDI++LV + + AWL YH V
Sbjct: 164 LALAAHFRGQIYWAKDIVFLVTEH---DLLGTEAWLEAYH---------------DVNVT 205
Query: 247 NFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVH 301
+S G R+G + AA+ L ++ ++ +L + E NGQ+PNLDL+N+
Sbjct: 206 GMQSSPLQG--RAGAIQAAVALELS--SDVVTSLDVAVEGLNGQLPNLDLLNLFQ 256
>sp|Q9X6Y1|RPOB_AQUPY DNA-directed RNA polymerase subunit beta OS=Aquifex pyrophilus
GN=rpoB PE=3 SV=1
Length = 1469
Score = 37.7 bits (86), Expect = 0.20, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 254 YGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVK 313
YG ++GT +L + N E + Y E + +DLINI+ YL R G RVK
Sbjct: 463 YGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHG-RVK 521
Query: 314 VEQFHWLLNSKWVKSLGEVFESLGKM 339
+ L N + V+S+GE+ E+ ++
Sbjct: 522 KDDIAHLGNRR-VRSVGELLENQARL 546
>sp|Q9CGG8|LDH3_LACLA L-lactate dehydrogenase 3 OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=ldhX PE=3 SV=1
Length = 323
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 217 PVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESK--ISYGIRRS 259
P+ WL+ Y P F D ++ E VG + F K SYGI S
Sbjct: 199 PLTTWLKKYPNPEFPTFDEIDQEIREVGLDIFMQKGNTSYGIAAS 243
>sp|O67762|RPOB_AQUAE DNA-directed RNA polymerase subunit beta OS=Aquifex aeolicus
(strain VF5) GN=rpoB PE=3 SV=1
Length = 1468
Score = 34.3 bits (77), Expect = 1.8, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 254 YGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVK 313
YG ++GT +L + E + Y E + +DL+NI+ YL R G RVK
Sbjct: 463 YGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHG-RVK 521
Query: 314 VEQFHWLLNSKWVKSLGEVFESLGKM 339
+ L N + V+S+GE+ E+ ++
Sbjct: 522 KDDIAHLGNRR-VRSVGELLENQARL 546
>sp|Q0AVV1|CH60_SYNWW 60 kDa chaperonin OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=groL PE=3 SV=1
Length = 546
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
Query: 293 NLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGIS 352
N D I Y+ + + + +E + L++ K + S+GEV L K+V+T P +
Sbjct: 193 NFDRGYISPYMITNTEKMEAVLEDPYILISDKKISSIGEVLPVLEKVVQTGKPMLLI--- 249
Query: 353 AADYVEGAATLASSLYHQV------------VFSLVVKLIVLHLALSLTHTHTVSGEVGL 400
A+ VEG A LA+ + +++ F K ++ +A+ LT+ S E+G+
Sbjct: 250 -AEEVEGEA-LATLVVNKLRGTFNCVAVKAPAFGERRKAMLEDIAI-LTNGQVASEELGV 306
Query: 401 CWQCVTLFHFG 411
+ V+L G
Sbjct: 307 KMENVSLDMLG 317
>sp|Q75EW4|DHYS_ASHGO Deoxyhypusine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=DYS1 PE=3 SV=1
Length = 382
Score = 32.3 bits (72), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 161 KEAIVLVTPYNAVKGGVRETLSLGIAYSVFS-LLTRVTWLAKDIIWLVADSQYGEYAPVA 219
K I L N + G+RETL + +++ S ++T + +DII +A + GE+
Sbjct: 99 KSTIFLGYTSNLISSGLRETLRYLVQHNMVSAIVTTAGGVEEDIIKCLAPTYLGEFTLKG 158
Query: 220 AWLRDYHTPAFSNLDSLNTETC 241
A LRD NL N C
Sbjct: 159 AALRDKGMNRIGNLLVPNNNYC 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,633,008
Number of Sequences: 539616
Number of extensions: 6674179
Number of successful extensions: 16357
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 16346
Number of HSP's gapped (non-prelim): 20
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)