BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013161
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/430 (83%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/430 (83%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/430 (82%), Positives = 395/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/430 (82%), Positives = 394/430 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT + +FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQDATA 430
EYQQYQDATA
Sbjct: 421 EYQQYQDATA 430
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/427 (82%), Positives = 392/427 (91%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ ++V
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+L+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
RKE+E+CDCLQGFQ+ H ISKIREEYPDR+M TFSV PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVEN DE +DNEALYDICFRTLKLTTP++GDLNHL+SATMSGVT CL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
RFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
A DPRHGRYLT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
Sbjct: 361 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 421 EYQQYQD 427
EYQQYQD
Sbjct: 421 EYQQYQD 427
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/429 (70%), Positives = 363/429 (84%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFV 60
MREI+H+ GQCGNQIG+ FWE +C EHG+D G Y G D+Q ER+NVY+NEAS G++V
Sbjct: 1 MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWV 60
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PR++ +DLEPGT+D+VR G +FRPDN++FGQS AGN WAKGHYTEGAEL+D+V+DV+
Sbjct: 61 PRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVI 120
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
R+EAE CD LQGFQ+ H ISKIREE+PDRMM TFSV PSPK SDT V
Sbjct: 121 RREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRV 180
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYNATLSVHQLVE++DE +DNEALYDIC RTLKL PS+GDLN+L+S+ MSGVT L
Sbjct: 181 EPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSL 240
Query: 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM 300
R+PGQLNSDLRKLAVNL+PFPRLHFFMVG+APLT+ GSQ +R+LTVPELTQQM+DAKNMM
Sbjct: 241 RYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMM 300
Query: 301 CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRG 360
AADPR+GRYLT +A FRGK+S KEV+++M VQ+KNS YFVEWIPNNV+++VC + P+G
Sbjct: 301 AAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQG 360
Query: 361 LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
L MA+TFI NSTSIQE+F+RV +QF+AMF+RKAFLHWYT EGMDE+EF+EAESNMNDLVS
Sbjct: 361 LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVS 420
Query: 421 EYQQYQDAT 429
EYQQYQ+AT
Sbjct: 421 EYQQYQEAT 429
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/437 (39%), Positives = 257/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LIS +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/437 (39%), Positives = 257/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LIS +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 172/437 (39%), Positives = 257/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LIS +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 357 bits (915), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 256/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 EPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 171/437 (39%), Positives = 256/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K S FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 257/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD VRK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN L+S +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T++ E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 256/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR+HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 355 bits (911), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 255/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 EPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 354 bits (908), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 255/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 EPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 354 bits (908), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 255/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 EPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 354 bits (908), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/437 (38%), Positives = 255/437 (58%), Gaps = 16/437 (3%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYIGTSDLQLERVNVYYNEAS 55
MRE + + GQ G QIG+ WE+ C EHGI P G + IG D + N +++E
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGD---DSFNTFFSETG 57
Query: 56 CGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDA 115
G+ VPRAV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E+ID
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 116 VLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKV 175
VLD +RK A+ C LQGF V H + ++ +Y + L FS++P+P+V
Sbjct: 118 VLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 176 SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235
S VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN LI +S
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 236 VTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
+T LRF G LN DL + NL+P+PR HF + +AP+ S + L+V E+T ++
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCD 355
N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P K +
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 357
Query: 356 IPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
PP + A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E E
Sbjct: 358 EPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 417
Query: 408 FTEAESNMNDLVSEYQQ 424
F+EA +M L +Y++
Sbjct: 418 FSEAREDMAALEKDYEE 434
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 255/433 (58%), Gaps = 11/433 (2%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRY---IGTSDLQLERVNVYYNEASCG 57
MRE++ + GQ G QIG+ WE+ EHGI P G + E + +++E G
Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPKGGEEGFSTFFHETGYG 60
Query: 58 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
+FVPRA+ +DLEP +D VR GPY +F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 61 KFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVL 120
Query: 118 DVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSD 177
D +RK A+ CD LQGF H + ++ EY + L F+V+P+P+VS
Sbjct: 121 DRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVST 180
Query: 178 TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237
+VVEPYN L+ H +E+AD ++DNEA+YD+C R L + PSF +LN+LI+ +S VT
Sbjct: 181 SVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVT 240
Query: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAK 297
LRF G LN DL + NL+P+PR+HF +V ++P+ S+ + + +V E+T ++
Sbjct: 241 ASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPG 300
Query: 298 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIP 357
N M DPR G+Y+ ++RG + T++V + V+NK + V+W P K +C P
Sbjct: 301 NQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEP 360
Query: 358 PRG--------LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFT 409
P + A + N+TSI E ++R+ +F M+ ++AF+HWY GEGM+E EFT
Sbjct: 361 PTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFT 420
Query: 410 EAESNMNDLVSEY 422
EA ++ L +Y
Sbjct: 421 EAREDLAALERDY 433
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 308 bits (790), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/432 (35%), Positives = 239/432 (55%), Gaps = 9/432 (2%)
Query: 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYI-GTSDLQLERVNVYYNEASCGRF 59
+REIL + GQCGNQI FW + EHG+ G G++ + V++++ G++
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 60 VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 119
VPRAVL+DLEPG + + G Q+F + V GA NNWA+G+ EG ++ID +++V
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 120 VRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTV 179
+ E LQGF + H + ++R+ YP + + TFSV PSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 180 VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239
VEPYNA L++ ++++NAD ++LDNEAL+ I L +P++ DLN++I+ +S VT
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTAS 239
Query: 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM 299
LRFPG+LN+DL + NL+PFP HF FAP+ G + P+L ++ + N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 300 MCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP--NNVKSSVCDIP 357
A D + G YL ASA+FRG + K+VDE M + + S + ++P +K +
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETA 357
Query: 358 PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417
P G + + + N T I +F R+ QF MF A+ HWY G+ +A N
Sbjct: 358 PEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKAR---NQ 414
Query: 418 LVSEYQQYQDAT 429
+ + Q Y+DA+
Sbjct: 415 IATLAQSYRDAS 426
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 247/439 (56%), Gaps = 22/439 (5%)
Query: 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVP 61
REI+ +Q GQCGNQIG +FW+ +C EHGI P + +R +V++ +A ++P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDV 119
RAVL+DLEP + S+ PY +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDT 178
+ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
VV+PYN+ L++ +L +NAD +VLDN AL I L + PSF +N L+S MS T
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAK 297
LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 298 NMMCAADPRHGR-------YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350
N+M + GR Y+ + +G++ +V + + ++ + + F+ W P +++
Sbjct: 302 NVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQ 357
Query: 351 SSVCDIP---PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
++ P ++ + N TSI +F R Q+ + +R+AFL + E M +
Sbjct: 358 VALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDN 417
Query: 408 FTEAESN---MNDLVSEYQ 423
F E +++ + L+ EY
Sbjct: 418 FDEMDTSREIVQQLIDEYH 436
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 279 bits (713), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 247/439 (56%), Gaps = 22/439 (5%)
Query: 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVP 61
REI+ +Q GQCGNQIG +FW+ +C EHGI P + +R +V++ +A ++P
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 62 RAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDAVLDV 119
RAVL+DLEP + S+ PY +++ P+N + GAGNNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 120 VRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSP-KVSDT 178
+ +EA+ D L+GF +CH + ++ + YP +++ T+SVFP+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238
VV+PYN+ L++ +L +NAD +VLDN AL I L + PSF +N L+S MS T
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAK 297
LR+PG +N+DL L +LIP PRLHF M G+ PLT+ S R TV ++ +++ K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 298 NMMCAADPRHGR-------YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVK 350
N+M + GR Y+ + +G++ +V + + ++ + + F+ W P +++
Sbjct: 302 NVMVST----GRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQ 357
Query: 351 SSVCDIP---PRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 407
++ P ++ + N TSI +F R Q+ + +R+AFL + E M +
Sbjct: 358 VALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDN 417
Query: 408 FTEAESN---MNDLVSEYQ 423
F E +++ + L+ EY
Sbjct: 418 FDEMDTSREIVQQLIDEYH 436
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 229/432 (53%), Gaps = 13/432 (3%)
Query: 7 VQGGQCGNQIGSKFWEVVCDEHGIDP-TGRYIGTSDLQLERVN-----VYYNEASCGRFV 60
V GQ GNQI + FW+ VC EHGIDP TG+ T+ R N E+S G +V
Sbjct: 9 VSIGQAGNQIAASFWKTVCLEHGIDPLTGQ---TAPGVAPRGNWSSFFSKLGESSSGSYV 65
Query: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
PRA+++DLEP +D+V+ G +F P N + GAG N+A G+ G E++ V+ +
Sbjct: 66 PRAIMVDLEPSVIDNVK-ATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRL 124
Query: 121 RKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
E + CD + G V H I ++E+Y + +L+ +V PSP+VS V
Sbjct: 125 DYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVT 184
Query: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240
EPYN +++ L +AD C++ DNEAL+D+ R + +P+ DLN LI+ ++G+T +
Sbjct: 185 EPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASM 244
Query: 241 RFPGQLNSD--LRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKN 298
RF G L + LR+L NL+P P LHF M FAPLT ++ L + E+ + ++D +
Sbjct: 245 RFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGS 304
Query: 299 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP 358
+ A P GR+L+ + ++RG M K + + + + WIP K + P
Sbjct: 305 VFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLP-LTYWIPTAFKIGYVEQPG 363
Query: 359 RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 418
+ + N+T I + R+ F +++RKAF +WY EGM E + ++ +L
Sbjct: 364 ISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQEL 423
Query: 419 VSEYQQYQDATA 430
V YQ +++ A
Sbjct: 424 VQSYQVAEESGA 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,547,269
Number of Sequences: 62578
Number of extensions: 490928
Number of successful extensions: 1053
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 28
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)