Query 013161
Match_columns 448
No_of_seqs 172 out of 1391
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5E-130 1E-134 938.0 30.8 431 1-431 1-434 (443)
2 PLN00221 tubulin alpha chain; 100.0 4E-110 8E-115 861.5 33.1 431 1-431 1-441 (450)
3 PTZ00335 tubulin alpha chain; 100.0 5E-109 1E-113 852.7 33.2 429 1-429 1-439 (448)
4 PTZ00010 tubulin beta chain; P 100.0 1E-108 2E-113 851.2 33.1 429 1-429 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 3E-108 6E-113 850.0 33.2 428 1-428 1-428 (447)
6 cd02188 gamma_tubulin Gamma-tu 100.0 1E-105 2E-110 824.2 30.7 420 2-422 1-431 (431)
7 PLN00222 tubulin gamma chain; 100.0 2E-105 5E-110 825.6 32.8 425 1-426 2-442 (454)
8 cd02187 beta_tubulin The tubul 100.0 3E-105 6E-110 822.8 32.9 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 4E-105 1E-109 822.6 31.2 423 2-424 1-433 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 9E-105 2E-109 821.8 32.5 417 1-428 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 3E-101 7E-106 739.8 27.0 425 1-426 2-440 (448)
12 cd02190 epsilon_tubulin The tu 100.0 1.9E-97 4E-102 753.6 29.0 379 2-425 1-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 5.5E-97 1E-101 764.8 32.1 410 4-423 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 2.2E-89 4.7E-94 698.6 29.5 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 4.7E-86 1E-90 633.3 15.5 404 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 9.6E-67 2.1E-71 502.8 15.2 350 42-431 6-356 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 5.2E-64 1.1E-68 503.0 24.2 327 3-371 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 1.2E-49 2.6E-54 411.7 30.8 407 2-424 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 7.2E-51 1.6E-55 384.5 10.1 215 3-223 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 1.5E-36 3.3E-41 281.6 9.9 185 49-244 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.4E-32 5.2E-37 274.5 15.8 219 1-260 1-226 (349)
22 KOG2530 Members of tubulin/Fts 100.0 4.4E-32 9.5E-37 267.5 10.9 239 1-255 1-324 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 8.4E-28 1.8E-32 237.2 14.7 199 4-257 3-206 (303)
24 TIGR00065 ftsZ cell division p 99.9 1.1E-25 2.3E-30 225.7 13.7 200 4-258 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 3.6E-25 7.8E-30 219.4 13.6 202 4-259 3-209 (304)
26 PRK13018 cell division protein 99.9 2.3E-24 5E-29 216.8 14.1 205 4-258 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 4E-23 8.6E-28 178.8 10.0 123 261-383 1-126 (126)
28 PRK09330 cell division protein 99.9 1.1E-22 2.3E-27 204.9 12.7 202 3-258 15-221 (384)
29 PF14881 Tubulin_3: Tubulin do 99.9 5.7E-21 1.2E-25 174.4 12.7 149 82-242 17-180 (180)
30 COG0206 FtsZ Cell division GTP 99.6 1.8E-14 4E-19 142.5 12.3 150 101-259 70-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 99.5 8.3E-15 1.8E-19 124.4 4.2 65 2-72 1-69 (115)
32 smart00865 Tubulin_C Tubulin/F 98.3 2.7E-07 5.9E-12 78.2 2.8 113 246-381 1-118 (120)
33 PF13809 Tubulin_2: Tubulin li 97.6 0.0014 3E-08 66.4 14.2 63 133-195 150-220 (345)
34 PRK14484 phosphotransferase ma 66.3 5.7 0.00012 34.1 2.9 30 113-144 41-70 (124)
35 PLN02847 triacylglycerol lipas 65.5 7.9 0.00017 41.8 4.4 62 103-168 224-287 (633)
36 PF03610 EIIA-man: PTS system 63.9 9.9 0.00021 31.8 4.0 34 111-144 38-71 (116)
37 cd00741 Lipase Lipase. Lipase 62.8 14 0.00029 32.3 4.8 57 104-164 2-58 (153)
38 PF06908 DUF1273: Protein of u 62.5 28 0.0006 31.8 6.8 108 112-237 27-134 (177)
39 PF12953 DUF3842: Domain of un 62.4 8.6 0.00019 33.1 3.2 27 142-168 7-34 (131)
40 cd00519 Lipase_3 Lipase (class 59.1 13 0.00029 34.8 4.4 74 100-178 98-171 (229)
41 TIGR00824 EIIA-man PTS system, 56.1 27 0.00059 29.3 5.3 36 112-147 40-75 (116)
42 cd00006 PTS_IIA_man PTS_IIA, P 56.0 30 0.00065 29.2 5.6 33 112-144 39-71 (122)
43 PF01764 Lipase_3: Lipase (cla 49.3 13 0.00029 31.5 2.4 56 102-161 35-91 (140)
44 PRK13660 hypothetical protein; 43.9 1.2E+02 0.0027 27.8 7.9 109 112-238 27-135 (182)
45 PRK09461 ansA cytoplasmic aspa 41.4 93 0.002 31.4 7.4 95 108-209 63-157 (335)
46 PF03283 PAE: Pectinacetyleste 40.4 49 0.0011 33.8 5.2 50 105-161 132-183 (361)
47 PLN02408 phospholipase A1 40.1 57 0.0012 33.4 5.6 64 111-178 179-244 (365)
48 TIGR02364 dha_pts dihydroxyace 39.9 29 0.00062 29.8 3.0 29 113-142 41-70 (125)
49 PF12210 Hrs_helical: Hepatocy 35.5 49 0.0011 26.9 3.4 55 368-425 28-89 (96)
50 COG0572 Udk Uridine kinase [Nu 35.1 41 0.00088 31.8 3.4 27 135-162 9-35 (218)
51 cd00411 Asparaginase Asparagin 30.9 1.7E+02 0.0037 29.3 7.3 94 108-209 60-155 (323)
52 PF00710 Asparaginase: Asparag 29.2 1.8E+02 0.0039 29.0 7.1 94 108-209 54-148 (313)
53 PTZ00489 glutamate 5-kinase; P 29.1 2.4E+02 0.0052 27.4 7.8 49 155-205 87-135 (264)
54 PF09370 TIM-br_sig_trns: TIM- 29.0 29 0.00063 33.7 1.3 32 115-154 2-33 (268)
55 COG1528 Ftn Ferritin-like prot 28.1 35 0.00076 30.8 1.6 34 374-407 97-132 (167)
56 PF01713 Smr: Smr domain; Int 27.1 2.3E+02 0.0051 21.7 6.1 54 115-171 10-69 (83)
57 PF08259 Periviscerokin: Periv 25.7 33 0.00071 16.5 0.5 8 255-262 3-10 (11)
58 PLN02802 triacylglycerol lipas 25.5 1.3E+02 0.0028 32.2 5.4 64 111-178 309-374 (509)
59 PRK15088 PTS system mannose-sp 25.0 1.3E+02 0.0027 30.3 5.1 36 111-146 40-75 (322)
60 PRK15414 phosphomannomutase Cp 24.4 5E+02 0.011 27.2 9.8 94 112-206 151-248 (456)
61 TIGR02153 gatD_arch glutamyl-t 23.5 3.1E+02 0.0067 28.5 7.8 91 108-205 120-211 (404)
62 PF02353 CMAS: Mycolic acid cy 23.1 1.1E+02 0.0024 29.9 4.2 63 99-168 29-92 (273)
63 COG4053 Uncharacterized protei 22.8 1.4E+02 0.0031 27.5 4.5 58 112-172 67-124 (244)
64 smart00870 Asparaginase Aspara 22.2 3E+02 0.0066 27.5 7.3 96 109-209 58-155 (323)
65 TIGR00519 asnASE_I L-asparagin 22.1 2.3E+02 0.005 28.5 6.5 96 108-210 59-159 (336)
66 COG1109 {ManB} Phosphomannomut 21.0 3.7E+02 0.0081 28.3 8.0 91 112-207 158-251 (464)
67 PF13508 Acetyltransf_7: Acety 20.7 1.2E+02 0.0026 22.8 3.2 33 130-165 29-61 (79)
68 PLN02371 phosphoglucosamine mu 20.2 5E+02 0.011 28.3 9.0 74 129-206 260-337 (583)
69 PRK14318 glmM phosphoglucosami 20.0 3.9E+02 0.0084 28.0 7.9 42 112-155 157-198 (448)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4.6e-130 Score=937.98 Aligned_cols=431 Identities=54% Similarity=1.013 Sum_probs=420.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
||||||||+||||||||.+||+++|+||||.++|.+....+.+.++.++||+|++.++|+||||+||+||++|+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999766666667899999999999999999999999999999999999
Q ss_pred CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp 160 (448)
|+.+|+|+++++||+|+|||||+|+|++|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
||.+.+++|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++.+|+|.++|++||++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCc
Q 013161 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||++|.|+.+|.++|||+|++||+.++|+|++.+....+++.++.++++++|+|+|||++|+|+.|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhccCCcccccccCCCcceeecCCCC---CCCCcceEeecCChhhHHHHHHHHHHHHhhccccccccc
Q 013161 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~ 397 (448)
+.++++++++.+++.|+...|++|+|+++++++|.++| ...+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999998 777899999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHhcccc
Q 013161 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431 (448)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (448)
|+++|||++||.||+++++++.++|+++++...+
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~ 434 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYL 434 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999765543
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.5e-110 Score=861.53 Aligned_cols=431 Identities=42% Similarity=0.830 Sum_probs=407.1
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCcc--ccccccccccccCCCCCCccceeecCCCCCccccccc
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSD--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRT 78 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
||||||||+||||||||.+||+++|+||+++++|....+.. ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987533221 1245778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
||++.+.+++|+|++..+++++++||++|++++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|.
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccC
Q 013161 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||||.++.|++++.++|||+|++||++++++|+++.....+.+++|.+++++++++++++++++|+.|+|||+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999886666678889999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC--------CCCcceEeecCChhhHHHHHHHHHHHHhhcc
Q 013161 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (448)
|++.+.++.+.+.+++.++...|++|+|+++++++|..+|. +.+.++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888999999999999999988764 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhcccc
Q 013161 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431 (448)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (448)
||||||||+++||||+||.||+++|++++++|+++.+...+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999765544
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.7e-109 Score=852.72 Aligned_cols=429 Identities=42% Similarity=0.850 Sum_probs=405.5
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCcc--ccccccccccccCCCCCCccceeecCCCCCccccccc
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSD--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRT 78 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
|||||+||+||||||||.+||+++++||+++++|....+.. ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643221 1245778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
||++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|.
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999767899999999999999999999999999999999999998998899999999999999999999
Q ss_pred cccCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccC
Q 013161 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||||.++.|++++.++|||||++||++++++|+.+.....+.+.+|.++++++++++++++.++|..++|||+++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999886666778899999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC--------CCCcceEeecCChhhHHHHHHHHHHHHhhcc
Q 013161 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~ 390 (448)
|++.+.++.+.+.+++.+....|++|+|+++++++|+.+|. +.+.++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988888999999999999999988764 3467899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 013161 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (448)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (448)
||||||||+++||||+||.||+++|++++++|+++.+..
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999986433
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1e-108 Score=851.23 Aligned_cols=429 Identities=90% Similarity=1.443 Sum_probs=410.4
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+....+...++.++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987644333333577899999999999999999999999999999888
Q ss_pred CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp 160 (448)
++.+|++++++.+++|+|||||+||+..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
++.+++++|+|++..+++++++||++|++++|.+++|++++|||++|+++|.+.+++++++|+++|++||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCc
Q 013161 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||.+|.|+.++.++|||||++||++++++|+.+.....+.++++.+|++++++++++++.++|.+|+|||+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988666678889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013161 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (448)
+.+.++.+.+.+++.++...|++|+|+++++++|+++|...+.++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999888888899999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 013161 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (448)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~ 429 (448)
+||||+||.||+++|++++++|+++.+..
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999987654
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.8e-108 Score=849.97 Aligned_cols=428 Identities=97% Similarity=1.515 Sum_probs=408.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+++++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887654443334577899999999999999999999999999999999
Q ss_pred CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcC
Q 013161 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp 160 (448)
++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|++.|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccc
Q 013161 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++.+++|+++|.+||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCc
Q 013161 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||.++.++.++.++|||+|++||+.++++|+.+.....++++++.+++++++++++++.++++.+|+||++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999987666667889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccC
Q 013161 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (448)
+.+.++.+.+.+++.+..+.|++|+|+++++++|+++|.+.+.++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999998888888899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 013161 401 EGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (448)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (448)
+|||++||.||+++|++++++|+++.+.
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988653
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1e-105 Score=824.18 Aligned_cols=420 Identities=38% Similarity=0.749 Sum_probs=396.9
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCC
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPY 81 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+++++||+++++|....+.+...++.++||+|+.+++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999998876543333356778999999999999999999999999999999998
Q ss_pred CcccCCCceeeccc--CCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhc
Q 013161 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (448)
Q Consensus 82 ~~~~~~~~~~~~~~--~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~dey 159 (448)
+++|++++++.+++ |+||||++||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|+|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999998 99999999976 6999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEecCCCC-CCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 160 PDRMMLTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|++.+++++|+|++.. +++++++||++|++++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998543 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhccccccCCccccccccccccccc-cccccccCHHHHHHhccCCCCcccccCC-CCCcceeeecc
Q 013161 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADP-RHGRYLTASAM 316 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (448)
++||||.+|.|+.++.++|||||++||++++++|+.+.. ...+...+|.++++.+++++++|+.+++ .++||||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999998866 4667889999999999999999999998 89999999999
Q ss_pred cCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC---CCCcceEeecCChhhHHHHHHHHHHHHhhccccc
Q 013161 317 FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 393 (448)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkA 393 (448)
+||++.+.++.+.+.+++.+..+.|++|+|+++++++|+.+|. +.+.++++++|+|+|..+|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988877889999999999999988774 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhhHHHHHHHHHHHHHHH
Q 013161 394 FLHWYTGEGMD---EMEFTEAESNMNDLVSEY 422 (448)
Q Consensus 394 flH~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 422 (448)
|||||+++||| ++||.||+++|++++++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2.4e-105 Score=825.55 Aligned_cols=425 Identities=35% Similarity=0.687 Sum_probs=398.0
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+.+++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 59999999999999999999999999999999887644333334677899999999999999999999999999999988
Q ss_pred CCcccCCCceeeccc--CCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 81 YGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++++|++++++.+++ |+||||++||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 899999999999996 69999999966 799999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCC-CCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCc
Q 013161 159 YPDRMMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
||++.+++++|+|++. .+++++++||++|+|++|.+++|+++++||++|+++|.+.+++++++|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999853 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchhhhhccccccCCccccccccccccccc-cccccccCHHHHHHhccCCCCcccccCCCC-----Ccce
Q 013161 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDAKNMMCAADPRH-----GRYL 311 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (448)
+++||||.+|.|+.++.++|||||++||+.++++|+.+.. ...++..++.++++++++++++|+.++|.. |+||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 344677889999999999999999888877 9999
Q ss_pred eeecccCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC---CCCcceEeecCChhhHHHHHHHHHHHHhh
Q 013161 312 TASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLSMASTFIGNSTSIQEMFRRVSEQFTAM 388 (448)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~N~t~i~~~l~~l~~~~~~m 388 (448)
|+++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|..+|. ..+.++++++|+|+|..+|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888999999999999999998874 46788999999999999999999999999
Q ss_pred cccccccccccCCCCC----hhhHHHHHHHHHHHHHHHHHHH
Q 013161 389 FRRKAFLHWYTGEGMD----EMEFTEAESNMNDLVSEYQQYQ 426 (448)
Q Consensus 389 ~~kkAflH~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~ 426 (448)
|+||||||||+++||+ ++||.||+++|++++++|++++
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~ 442 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACE 442 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999993 8999999999999999999875
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.7e-105 Score=822.78 Aligned_cols=424 Identities=86% Similarity=1.404 Sum_probs=404.3
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCC
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPY 81 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+++++||+++++|.+....+...+..++||+|+.+++|+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999998876433332235678999999999999999999999999999998888
Q ss_pred CcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCC
Q 013161 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~ 161 (448)
+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCccccc
Q 013161 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcC
Q 013161 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (448)
Q Consensus 242 ~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (448)
|||.+|.|+.++.++|||||++||++++++|+.+.....+.++++.+|++++++++++++.++|.+++|||+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999886666678899999999999999999989999999999999999999
Q ss_pred ChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013161 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
.+.++.+.+.+++.+....|++|+|+++++.+|+++|...+.++++++|+|+|..+|+++.++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988888999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013161 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (448)
||||+||.||+++|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999876
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=4.4e-105 Score=822.56 Aligned_cols=423 Identities=42% Similarity=0.838 Sum_probs=400.8
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCcc--ccccccccccccCCCCCCccceeecCCCCCcccccccc
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSD--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTG 79 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~ 79 (448)
||||+||+||||||||.+||+++++||+++++|....+.. ...++.++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987644322 23457789999999999999999999999999999998
Q ss_pred CCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhc
Q 013161 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~dey 159 (448)
+++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCccc
Q 013161 160 PDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (448)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (448)
|++.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999986667889999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCC
Q 013161 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG 319 (448)
Q Consensus 240 ~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (448)
+||||..+.|++++.++|||+|++||++++++|+.+.....+.+.+|.+|++++++++++|+.++++.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999998866667788999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC--------CCCcceEeecCChhhHHHHHHHHHHHHhhccc
Q 013161 320 KMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--------GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391 (448)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~k 391 (448)
++.+.++.+.+.+++.+....|++|+|+++++++|+.+|. +.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999999999999998764 34578999999999999999999999999999
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013161 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 392 kAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
|||||||+++||||+||.||+++|++++++|++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=8.7e-105 Score=821.79 Aligned_cols=417 Identities=34% Similarity=0.679 Sum_probs=392.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcC-CCCCCCCcCCccccccccccccccCC-----CC--CCccceeecCCCCCc
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHG-IDPTGRYIGTSDLQLERVNVYYNEAS-----CG--RFVPRAVLMDLEPGT 72 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~llvD~e~~~ 72 (448)
|||||+||+||||||||.+||+++|+||+ ++++|.+ .++.++||++.+ .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 346789998532 23 499999999999999
Q ss_pred cccccccCCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHH
Q 013161 73 MDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (448)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~ll 152 (448)
|++++.++++++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCC-------------
Q 013161 153 SKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTT------------- 219 (448)
Q Consensus 153 e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~------------- 219 (448)
|.|+|+||++.+++++|+|+ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688899999999999999999999999999999999988777653
Q ss_pred --------------CCccchhHHHHHHhhcCcccccCCCCCccchhhhhccccccCCccccccccccccccccccccccC
Q 013161 220 --------------PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 285 (448)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t 285 (448)
++|+++|++||++|+++|.++||||.+|.|+.++.++|||||++||+.++++|+.+.....+.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 889999999999999999999999999999999999999999999999999999876666678899
Q ss_pred HHHHHHhccCCCCcccccCCCCCcceeeecccCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcce
Q 013161 286 VPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMAS 365 (448)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (448)
|.+|++++++++++|+.++|.+++|||+++++||+..+.++.+.+.+++. ...|++|+|+++++++|+++|...+.++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999888899988888764 4889999999999999999998899999
Q ss_pred EeecCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 013161 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (448)
Q Consensus 366 ~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (448)
++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++++++|+++...
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999998643
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=3.2e-101 Score=739.79 Aligned_cols=425 Identities=37% Similarity=0.728 Sum_probs=397.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
||||||+|+||||||||.+||+++|.||+|.++|.......+..++.++||++..++.|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 58999999999999999999999999999999999766555667899999999999999999999999999999999999
Q ss_pred CCcccCCCceeec--ccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 81 YGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++++|+++|++.. ..|+|||||.||. +|++..|+++|.|+|++|.||+|.||+++||++||||||+||.|+|.|+|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998765 4689999999987 599999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCC-CCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCc
Q 013161 159 YPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
||||.+.+++|||.. ..++++|||||++|+|++|.+.+|+++++||++|.++|.+.+.+.+|+|+++|++||..+++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999984 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchhhhhccccccCCcccccccccccccccccc--ccccCHHHHHHhccCCCCcccccCC---CCCccee
Q 013161 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ--YRALTVPELTQQMWDAKNMMCAADP---RHGRYLT 312 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~--~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (448)
.++||||+++.++..|...|+|+|++||+.+++.|++...... +++.++.+..++++.|+++|++..+ .+..|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 9999999999999999999999999999999999999865433 4788999999999999999988765 2336889
Q ss_pred eecccCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCC---CCCCcceEeecCChhhHHHHHHHHHHHHhhc
Q 013161 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---RGLSMASTFIGNSTSIQEMFRRVSEQFTAMF 389 (448)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~ 389 (448)
...++.|.+.+..+...+.+++.+....|++|.|..+.++..+..| .+++.|+.+++|||+|...|++++.+|+||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999998766554 5678899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---hHHHHHHHHHHHHHHHHHHH
Q 013161 390 RRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQYQ 426 (448)
Q Consensus 390 ~kkAflH~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~~ 426 (448)
+||||+|+|.++||+++ ||.|+++.+++++++|+...
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~ 440 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAE 440 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999998 99999999999999998774
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.9e-97 Score=753.58 Aligned_cols=379 Identities=38% Similarity=0.737 Sum_probs=363.6
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCC
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPY 81 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 699999999999999999999999997 67999999999999999999888
Q ss_pred CcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCC
Q 013161 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~ 161 (448)
+++|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.|+|.|+|+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCccccc
Q 013161 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|+++|++||+.|+++|.++|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999996 4888999999999999999999999999999997 699999999999999999999
Q ss_pred CCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcC
Q 013161 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKM 321 (448)
Q Consensus 242 ~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (448)
|||.+|.|+.++.++|||+|++||++++++|+.+.....+.+.++.++++.+++++++|+.+++..++||++++++||+.
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999886666678899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013161 322 STKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
.+.++.+.+.+++.+ ..|++|+|++++++.|+++|...+.++++++|+|+|..+|+++.++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999998888887665 679999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013161 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (448)
||||+||.||+++|++++++|+++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=5.5e-97 Score=764.80 Aligned_cols=410 Identities=28% Similarity=0.547 Sum_probs=377.2
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCC-
Q 013161 4 ILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYG- 82 (448)
Q Consensus 4 Iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~- 82 (448)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|+++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 12456789999999999999999999999999999987644
Q ss_pred -cccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCC
Q 013161 83 -QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 83 -~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~ 161 (448)
.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCccccc
Q 013161 162 RMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||+.|+++|.+.|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 999999999984 7899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhcc---CCCCcccc--------
Q 013161 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMW---DAKNMMCA-------- 302 (448)
Q Consensus 242 ~-~-------~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (448)
+ | |+.+.++.++.++|||+|++||++++++|+++.....+...+|.+++++++ .+++++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 6 5 346899999999999999999999999999887666788899999999865 56666654
Q ss_pred -----------cCCCCCcceeeecccCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC--CCCcceEeec
Q 013161 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR--GLSMASTFIG 369 (448)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (448)
+++..++||++++++||+....++...+ +....|++|+|+++++++|..++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 3467889999999999997776765432 356889999999999999988774 4688999999
Q ss_pred CChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013161 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (448)
Q Consensus 370 N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (448)
|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=2.2e-89 Score=698.64 Aligned_cols=381 Identities=51% Similarity=0.948 Sum_probs=362.4
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCC
Q 013161 3 EILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYG 82 (448)
Q Consensus 3 EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||.+||+++ |+||+||++++.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999964 9999999999999998888
Q ss_pred cccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCc
Q 013161 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~ 162 (448)
.+|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|+.++|.|+|+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccC
Q 013161 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (448)
.+++++|+|+...+++++++||++|++++|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999996555589999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcCC
Q 013161 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (448)
Q Consensus 243 ~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (448)
||.++.|++++.++|||+|++||++++++|+++.....+...++.+++++++++++++..++++.++||++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999998765556678899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC-CCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccccCC
Q 013161 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR-GLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
+.++.+.+.+++.+.... +|+|++++++.|+++|. ..++++++++|+|+|..+|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 899988888877654443 89999999999999997 888999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013161 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999963
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=4.7e-86 Score=633.33 Aligned_cols=404 Identities=42% Similarity=0.812 Sum_probs=379.9
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccc--cccccccccccCCCCCCccceeecCCCCCccccccc
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDL--QLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRT 78 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
|||||+|++||+|.|||+++|+++|.||++.++|..+.+.+. ..+.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998765543 34467899999999999999999999999 999999
Q ss_pred cCCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++|+.+|||++++.|+++++||+|+|+|+.|+|..+..+++||+.++.|..||||.+|||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+||..+.++++|++..+..+++|||++|+.+...+++|+.+++||.+++.+|++.+.+..|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccC
Q 013161 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||.|.+|.||.++.+||+||| + ++|+.+......++.++.+++...|.+.++|++|+|.+|||+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8888877776778889999999999999999999999999999999999
Q ss_pred CcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCCCcceEeecCChhhHHHHHHHHHHHHhhcccccccccc
Q 013161 319 GKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y 398 (448)
|++.|+++..+++.+|.++...|++-.-.+-. ..+..+++|+|+|+|+|++.+.++..+|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg~-------lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPGGD-------LAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccCcc-------hhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 99999999999999999999999872211111 12345789999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHH
Q 013161 399 TGEGMDEMEFTEAESNMNDLV 419 (448)
Q Consensus 399 ~~~Gmee~eF~ea~~~l~~l~ 419 (448)
+++||||+||.||+++|..+.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998764
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=9.6e-67 Score=502.77 Aligned_cols=350 Identities=87% Similarity=1.365 Sum_probs=330.9
Q ss_pred ccccccccccccCCCCCCccceeecCCCCCccccccccCCCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHH
Q 013161 42 LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVR 121 (448)
Q Consensus 42 ~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir 121 (448)
.+..+.+++|.+...++|+||+|+||++|++++.+++++++.+|+|++ +++| .|+|..|.+..|.
T Consensus 6 ~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds------ 70 (369)
T KOG1375|consen 6 LQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS------ 70 (369)
T ss_pred ceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc------
Confidence 356788999999999999999999999999999999999999999998 4444 7889899888776
Q ss_pred HHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEE
Q 013161 122 KEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMV 201 (448)
Q Consensus 122 ~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~ 201 (448)
.||.+|||+++||++||||||.|++++..++++||.+.+.+++|.|++. ++++++|||+.|++..|.+++|.+++
T Consensus 71 ----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~c 145 (369)
T KOG1375|consen 71 ----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFC 145 (369)
T ss_pred ----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccc
Confidence 8999999999999999999999999999999999999999999999966 89999999999999999999999999
Q ss_pred ecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccCCCCCccchhhhhccccccCCccccccccccccccccccc
Q 013161 202 LDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQY 281 (448)
Q Consensus 202 ~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~ 281 (448)
+||++|+.+|.+.+++++++ ++|..+||||.+|.|+.++..|++|+|++||+.+.++|++....+++
T Consensus 146 idNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~ 212 (369)
T KOG1375|consen 146 IDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQY 212 (369)
T ss_pred cccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhcccccccccccccccc
Confidence 99999999999999988877 88999999999999999999999999999999999999999988999
Q ss_pred cccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcCChHHHHHHHHhhhccCCcccccccCCCcceeecCCCCCCC
Q 013161 282 RALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGL 361 (448)
Q Consensus 282 ~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~ 361 (448)
+..++++++.++|+.++++..++ ||+++.++|| +.+++..+...++.|+...|++|+|+++|.++|..+|...
T Consensus 213 ~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl 285 (369)
T KOG1375|consen 213 RALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL 285 (369)
T ss_pred ccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc
Confidence 99999999999999999999887 9999999999 6788888899999999999999999999999999999999
Q ss_pred CcceEeecCChhhHHHHHHHHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH-Hhcccc
Q 013161 362 SMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-QDATAD 431 (448)
Q Consensus 362 ~~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~-~~~~~~ 431 (448)
+.+.+.++|+|+|...|+.+.++|..||+||||+|||+++||+|+||.||..++.+++.+|+++ .+...+
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~ 356 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE 356 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 444433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=5.2e-64 Score=503.01 Aligned_cols=327 Identities=47% Similarity=0.868 Sum_probs=303.1
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCC
Q 013161 3 EILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYG 82 (448)
Q Consensus 3 EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||++||+++ |+||+|+++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999842 9999999999999988877
Q ss_pred cccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCc
Q 013161 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~ 162 (448)
.+|++.+.+.+++|+||||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|||+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccC
Q 013161 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (448)
.+++++|+|+...+ +++++||+++++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999985433 68999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCccchhhhhccccccCCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcCC
Q 013161 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMS 322 (448)
Q Consensus 243 ~~~~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (448)
||.+|.|++++.++|+|+|++||++++++|+...........+..++++++++++++++.+++..++++++.+++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998654445567788999999999999998888888999999999999998
Q ss_pred hHHHHHHHHhhhccCCcccccccCCCcceeecCCCCC-CCCcceEeecCC
Q 013161 323 TKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR-GLSMASTFIGNS 371 (448)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~N~ 371 (448)
..++.+.+..++.+..+. +|+|++++++.|+.++. ..+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 889988888887765544 89999999999998876 677889999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.2e-49 Score=411.68 Aligned_cols=407 Identities=20% Similarity=0.253 Sum_probs=287.0
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCC----CCCCccceeecCCCCCcccccc
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEAS----CGRFVPRAVLMDLEPGTMDSVR 77 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~i~~~~ 77 (448)
|||||||+||++|+||+||||.|...+++.+++. ....+++++||++. ..+|+||+|++|++++.-...+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999866665554432 23467899999964 6699999999999996432211
Q ss_pred ----------------ccCCCcccCCCceeec-----ccCCCCCCccCccc---chhhhHHHHHHHHHHHhhhcCCCCce
Q 013161 78 ----------------TGPYGQIFRPDNFVFG-----QSGAGNNWAKGHYT---EGAELIDAVLDVVRKEAENCDCLQGF 133 (448)
Q Consensus 78 ----------------~~~~~~~~~~~~~~~~-----~~~~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lqgf 133 (448)
.+-.+-.|||+++..- ..+.+++|+.|+-. .+.+..|+++|+||+++|+||+||||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 1112335899988654 24555666655432 45678899999999999999999999
Q ss_pred eEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCC----CCccchhhHHHHHHHHHhhcCCeeEEecCh-hhh
Q 013161 134 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDNE-ALY 208 (448)
Q Consensus 134 ~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~-~l~ 208 (448)
++++|++||| ||+|+.++|.|+|||||+.++++++.|.+.. .+.++++||++|++.+|.+++|+++|+.-. ..|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999996432 256899999999999999999999999843 445
Q ss_pred hhhcc-----cccCCCCCccchhHHHHHHhhcCcccccCCCCCccchhhhhccccccCCcccccccc-cccccccccccc
Q 013161 209 DICFR-----TLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYR 282 (448)
Q Consensus 209 ~~~~~-----~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~-~p~~~~~~~~~~ 282 (448)
..... .+.++..+..+..+++|.+|.++|.++|..+.. .+|.+|...|.+..| |+...+. .|+... .
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~-----~ 306 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV-----G 306 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC-----C
Confidence 43322 233334456677899999999999999998755 569999999997665 6665544 344321 2
Q ss_pred ccCHHHHHHhccC--CCCcccccCCCCCcceeeecccCCcCChH-------------------HHHHHHHhh-hccCCcc
Q 013161 283 ALTVPELTQQMWD--AKNMMCAADPRHGRYLTASAMFRGKMSTK-------------------EVDEQMINV-QNKNSSY 340 (448)
Q Consensus 283 ~~t~~~l~~~~~~--~~~~~~~~~~~~~~~ls~~~~~RG~~~~~-------------------~~~~~~~~~-~~~~~~~ 340 (448)
..++.+++.+.-. +-.++....+...++.++++++||..... .+.+.+... +...+..
T Consensus 307 ~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s 386 (493)
T cd06060 307 GQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGS 386 (493)
T ss_pred CCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCc
Confidence 2345555555421 11222221133467999999999974111 111111110 1001111
Q ss_pred cc--cccCCCccee----------ecCC------CC--CC---CC--cceEeecCChhhHHHHHHHHHHHHhhccccccc
Q 013161 341 FV--EWIPNNVKSS----------VCDI------PP--RG---LS--MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395 (448)
Q Consensus 341 f~--~w~p~~~~~~----------~~~~------~~--~~---~~--~s~~~l~N~t~i~~~l~~l~~~~~~m~~kkAfl 395 (448)
+. .-.+.++++. +... +. .. ++ ..++.|.|++++..+|+.++.++.|+-.+| +
T Consensus 387 ~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~ 464 (493)
T cd06060 387 MSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--K 464 (493)
T ss_pred chhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--h
Confidence 10 0001111110 0000 00 00 11 134668999999999999999999999999 9
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013161 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 396 H~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
|.|.+.|+|+|||+|+++.|.+++++|++
T Consensus 465 ~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 465 ASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=7.2e-51 Score=384.47 Aligned_cols=215 Identities=48% Similarity=0.960 Sum_probs=201.0
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCC
Q 013161 3 EILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYG 82 (448)
Q Consensus 3 EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||.+||+++++||+++++. .......+.++||++...++|+||+|+||+|+++++.++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998871 12234567789999999999999999999999999999988877
Q ss_pred cccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCc
Q 013161 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~ 162 (448)
.+|++++++.+++|+|+||+.||+..|++..++++|+||+++|+||.+|+|+++||+|||||||++|.|++.||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCcc
Q 013161 163 MMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFG 223 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~ 223 (448)
.+++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.+++.+++|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999 44 88999999999999999999999999999999999999998878775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=1.5e-36 Score=281.63 Aligned_cols=185 Identities=39% Similarity=0.692 Sum_probs=171.4
Q ss_pred cccccCCCCCCccceeecCCCCCccccccccCCCcccCCCceeecccCCCCCCccCccc-----chhhhHHHHHHHHHHH
Q 013161 49 VYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDAVLDVVRKE 123 (448)
Q Consensus 49 ~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnn~a~G~~~-----~g~~~~~~~~d~ir~~ 123 (448)
++|.++ ++.||+|++|+++++++.+..++.+..|++++.+.++.++||||++||+. .|++..++++|+||++
T Consensus 3 ~~~g~g---~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGVG---GYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEeC---CchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 355543 78899999999999999988777777899988999999999999999998 8999999999999999
Q ss_pred hhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEec
Q 013161 124 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (448)
Q Consensus 124 ~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 203 (448)
+|+| ++|+++||+|||||||+++.+++.++ +||+.. ++++|+|+ ..|.++++||+++++++|.+++|.++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 89999999999999999999999999 999877 99999995 57889999999999999999999999999
Q ss_pred ChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccCCC
Q 013161 204 NEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 244 (448)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 244 (448)
|++|.+++.+.+.+ .++|+.+|++|++.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877766 78999999999999999999999986
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.98 E-value=2.4e-32 Score=274.49 Aligned_cols=219 Identities=22% Similarity=0.276 Sum_probs=189.5
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccC
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGP 80 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|+ |..|.+|+||+.|-+++++. +. ..+.+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~-----------------------~~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DK-----------------------RSGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CC-----------------------CcCCccceeEEEEECCHHHHHhhhc--
Confidence 66 88999999999999999862 00 0123678999999999998887764
Q ss_pred CCcccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCC--CCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
...++.++.+++.+....+.|.+..|++..++.+|.||+++|.||. +|+|++++|+|||||||+++.+++.++++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 3467788888864444445555667899999999999999999997 99999999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ +.+++++++|+. .+..+++||+++++++|.+++|.++++||++|.+++.. + .++|+.+|++|++.|..++.
T Consensus 127 ~~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~ 199 (349)
T cd02202 127 YE-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLR 199 (349)
T ss_pred CC-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHH
Confidence 99 889999999984 34589999999999999999999999999999998632 2 37899999999999999999
Q ss_pred cccC-----CCCCccchhhhhcccccc
Q 013161 239 CLRF-----PGQLNSDLRKLAVNLIPF 260 (448)
Q Consensus 239 ~~r~-----~~~~~~~~~~l~~~L~P~ 260 (448)
+.|| ||.+|.|++++.++|.+.
T Consensus 200 ~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 200 AGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred hhhcccCCCCCeEeccHHHHHHHhccC
Confidence 9999 999999999999999764
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.97 E-value=4.4e-32 Score=267.48 Aligned_cols=239 Identities=23% Similarity=0.344 Sum_probs=174.7
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCcccccccc-ccccccCC----CCCCccceeecCCCCCcccc
Q 013161 1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERV-NVYYNEAS----CGRFVPRAVLMDLEPGTMDS 75 (448)
Q Consensus 1 M~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~F~e~~----~~~~~pR~llvD~e~~~i~~ 75 (448)
||||+|||+|+.+|++|+||||+|..-.++.++...... ...+ ||||+.+. ..+|+||+|+||++...-..
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~----~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG----ELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh----hcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 999999999999999999999999777777665543321 1222 89999863 44999999999998843211
Q ss_pred c----------------ccc--------C-------------------------------------------CCcccCCC
Q 013161 76 V----------------RTG--------P-------------------------------------------YGQIFRPD 88 (448)
Q Consensus 76 ~----------------~~~--------~-------------------------------------------~~~~~~~~ 88 (448)
. +.+ + .+..|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 0 000 0 01123444
Q ss_pred ceee-----cccCCCCCCccCcccchh-hhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCc
Q 013161 89 NFVF-----GQSGAGNNWAKGHYTEGA-ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 89 ~~~~-----~~~~~gnn~a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~ 162 (448)
.+.. ...++-++|..|+-...+ .+.+++.|+||+++|+||.||||+++.++.+|+| |+++.++|.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCC
Confidence 3321 122233455566544332 3678899999999999999999999999999987 99999999999999999
Q ss_pred eeEEEEEecCCC-CCCccc---h---hhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhc
Q 013161 163 MMLTFSVFPSPK-VSDTVV---E---PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235 (448)
Q Consensus 163 ~i~~~~v~P~~~-~~~~~~---~---~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 235 (448)
.+++|+..|.+. .++... . ..|.++++.+|.++|++++|+.--.. +. ......+++|.++.+
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds 304 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDS 304 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhccc
Confidence 999999998543 222222 2 56899999999999999999853221 11 245678899999999
Q ss_pred CcccccCCCCCccchhhhhc
Q 013161 236 VTCCLRFPGQLNSDLRKLAV 255 (448)
Q Consensus 236 ~t~~~r~~~~~~~~~~~l~~ 255 (448)
+|.|.|.-+..+..+.++.+
T Consensus 305 ~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 305 ITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccceecchhHHHHHHHHH
Confidence 99999998876655555544
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=8.4e-28 Score=237.18 Aligned_cols=199 Identities=23% Similarity=0.345 Sum_probs=166.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCCc
Q 013161 4 ILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQ 83 (448)
Q Consensus 4 Iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|.+|+||+.+-+++++. ++ . -.+.+.+|++...++.+..
T Consensus 3 i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a----- 44 (303)
T cd02191 3 IAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEA----- 44 (303)
T ss_pred EEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCC-----
Confidence 78899999999999998762 00 0 1468899998877665542
Q ss_pred ccCCCceeec-----ccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 84 IFRPDNFVFG-----QSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 84 ~~~~~~~~~~-----~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++.++.| -.|+|+||. .|++..++.+|+||+.+|.||. |++++|+|||||||+++.+++.+++.
T Consensus 45 ---~~ki~iG~~~t~g~GaG~~~~-----~G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~ 113 (303)
T cd02191 45 ---ENRVLIGQARTKGLGAGANPE-----LGAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRI 113 (303)
T ss_pred ---CcEEecCCccccCCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHh
Confidence 2234444 357888875 5678999999999999999994 89999999999999999999999999
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ . +++|+|.|...|..+++||+.+++++|.+++|.++++||++|.+++.+ +.+. .+|+.+|++|++.+.++|.
T Consensus 114 ~~--~--~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~ 187 (303)
T cd02191 114 GT--L--TVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFG 187 (303)
T ss_pred CC--C--EEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHH
Confidence 86 3 444444444567789999999999999999999999999999999976 7764 6999999999999999999
Q ss_pred cccCCCCCccchhhhhccc
Q 013161 239 CLRFPGQLNSDLRKLAVNL 257 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L 257 (448)
++|+||.+|.|++++.+.|
T Consensus 188 ~i~~~g~invD~~dv~~~l 206 (303)
T cd02191 188 AIEIEGEINVDFADVKNVM 206 (303)
T ss_pred hhccCCcccCCHHHHHHHh
Confidence 9999999999999998866
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=1.1e-25 Score=225.68 Aligned_cols=200 Identities=20% Similarity=0.334 Sum_probs=162.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCCc
Q 013161 4 ILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQ 83 (448)
Q Consensus 4 Iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|.+|+||+.+-+++++. ++ .-...+.+|++...++.+..
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a----- 61 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKA----- 61 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCC-----
Confidence 78899999999999998762 00 01456888887665544432
Q ss_pred ccCCCceeecc-----cCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 84 IFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 84 ~~~~~~~~~~~-----~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++.+..|+ .|+|++|. .|++..++.+|+||+.+|.||.+ ++++|+|||||||+++.+++.+++
T Consensus 62 ---~~ki~iG~~~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake- 129 (349)
T TIGR00065 62 ---DKKILIGKKLTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE- 129 (349)
T ss_pred ---CeEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-
Confidence 22344443 36777766 57899999999999999999986 999999999999999977666655
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ +.++++.++|+ ..|..+++||+.+++++|.+++|+++++||++|.+++.+ +.+. ..|+.+|.+|++.+.++|.
T Consensus 130 ~~-~l~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~ 204 (349)
T TIGR00065 130 LG-ALTVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISE 204 (349)
T ss_pred cC-CCEEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHH
Confidence 54 44555555565 567789999999999999999999999999999999977 7764 5999999999999999999
Q ss_pred cccCCCCCccchhhhhcccc
Q 013161 239 CLRFPGQLNSDLRKLAVNLI 258 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~ 258 (448)
++|+||.+|.|+.++.+-|-
T Consensus 205 ~ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 205 LITKPGLINIDFADVRAVMS 224 (349)
T ss_pred hhccCCcCcCCHHHHHHHHh
Confidence 99999999999999998663
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=3.6e-25 Score=219.36 Aligned_cols=202 Identities=17% Similarity=0.320 Sum_probs=164.1
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCCc
Q 013161 4 ILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQ 83 (448)
Q Consensus 4 Iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|.+|+||+.+-+++++. ++ . -...+.+|++...++.+..
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~----- 44 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA----- 44 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-----
Confidence 77899999999999998762 10 0 0457888887766655432
Q ss_pred ccCCCceeecc-----cCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q 013161 84 IFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 84 ~~~~~~~~~~~-----~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~de 158 (448)
++.+..|+ .|+|++|+ .|++..++.+|+||+.+|.||.+ ++++|+|||||||+++.+++.++ +
T Consensus 45 ---~~k~~ig~~~t~g~Gag~~~~-----~g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e 112 (304)
T cd02201 45 ---PNKIQLGKELTRGLGAGGDPE-----VGRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-E 112 (304)
T ss_pred ---CcEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-H
Confidence 22333433 46777766 55788899999999999999986 99999999999999999777665 4
Q ss_pred cCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 159 YPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ +.++++.++|+ ..|..+++||+++++++|.+++|.++++||++|.+++.+.+.+.. .|+.+|++|++++.++|.
T Consensus 113 ~g-~~~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~ 188 (304)
T cd02201 113 MG-ALTVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISD 188 (304)
T ss_pred cC-CCEEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 65 35556666665 456679999999999999999999999999999999987777754 899999999999999999
Q ss_pred cccCCCCCccchhhhhccccc
Q 013161 239 CLRFPGQLNSDLRKLAVNLIP 259 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P 259 (448)
++|+||.+|.|+.++.+.|-.
T Consensus 189 ~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 189 LITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HhccCccccCCHHHHHHHhcc
Confidence 999999999999999987754
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.91 E-value=2.3e-24 Score=216.83 Aligned_cols=205 Identities=22% Similarity=0.369 Sum_probs=165.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCCc
Q 013161 4 ILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQ 83 (448)
Q Consensus 4 Iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|.+|+||+.+-+++++. ++ .+ ...|.++++...+..+..
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a----- 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKA----- 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCC-----
Confidence 78899999999999998762 10 00 346888888765554332
Q ss_pred ccCCCceeecccCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCce
Q 013161 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (448)
Q Consensus 84 ~~~~~~~~~~~~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~ 163 (448)
+..+..|+.-...-.+.|.+..|++..++.+|.||+.+|.||. |+|++|||||||||+++.+++.+++. + ..
T Consensus 73 ---~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~-g-~l 144 (378)
T PRK13018 73 ---DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQ-G-AL 144 (378)
T ss_pred ---CcEEecCCccCCCCCCCCChHHHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHc-C-CC
Confidence 2344454432222233344556788899999999999999997 79999999999999999999999874 4 55
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccCC
Q 013161 164 MLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (448)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (448)
++++++.|+. .+...+..|+.+++++|.+++|+++++||++|.++| +.+.+. ..|+.+|++|++++.++|.++|+|
T Consensus 145 tv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 6788899983 455689999999999999999999999999999999 667664 589999999999999999999999
Q ss_pred CCCccchhhhhcccc
Q 013161 244 GQLNSDLRKLAVNLI 258 (448)
Q Consensus 244 ~~~~~~~~~l~~~L~ 258 (448)
|.+|.|++++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999998663
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.89 E-value=4e-23 Score=178.75 Aligned_cols=123 Identities=42% Similarity=0.868 Sum_probs=111.7
Q ss_pred CCccccccccccccccccccccccCHHHHHHhccCCCCcccccCCCCCcceeeecccCCcCChHHHHHHHHhhhccCCcc
Q 013161 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340 (448)
Q Consensus 261 p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (448)
|++||+.++++|+........++.++.+|++++|+++++|+++++.+|+|||+++++||++.+.++.+.+.+++.+....
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999887777889999999999999999999999999999999999999999999999999999998899
Q ss_pred cccccCCCcceeecCCCCCCCCcc---eEeecCChhhHHHHHHHHH
Q 013161 341 FVEWIPNNVKSSVCDIPPRGLSMA---STFIGNSTSIQEMFRRVSE 383 (448)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~N~t~i~~~l~~l~~ 383 (448)
|++|+|+++++++|+++|.....+ +++|+|+|+|.+.|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887777 9999999999999999864
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.88 E-value=1.1e-22 Score=204.94 Aligned_cols=202 Identities=21% Similarity=0.363 Sum_probs=161.8
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccCCCCCCccceeecCCCCCccccccccCCC
Q 013161 3 EILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYG 82 (448)
Q Consensus 3 EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
.|-.|.+|+||+.+-+++++. ++ .+ ...+.++++...+..+..
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-------------------------~~---v~fia~NTD~q~L~~~~a---- 57 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-------------------------QG---VEFIAANTDAQALLKSKA---- 57 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEeCcHHHHhcCCC----
Confidence 377899999999999998762 10 00 246888887665543322
Q ss_pred cccCCCceeecc-----cCCCCCCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHh
Q 013161 83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (448)
Q Consensus 83 ~~~~~~~~~~~~-----~~~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~d 157 (448)
+..+..|+ .|+|++ +..|++..++..|.||+.++.||.+ +|+++||||||||.++. +..+..
T Consensus 58 ----~~ki~lG~~~t~GlGaG~~-----pe~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iak 124 (384)
T PRK09330 58 ----PVKIQLGEKLTRGLGAGAN-----PEVGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAK 124 (384)
T ss_pred ----CeEEEcCCcccccCCCCCC-----HHHHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHH
Confidence 22344443 355555 4478899999999999999999888 99999999999999995 445556
Q ss_pred hcCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCc
Q 013161 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 158 eyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
+|+ +++++|+|.|...|..+++||+.++|+.|.+++|.+|+++|++|.+++.+.+.+. ..|+.+|.+|++.+.+++
T Consensus 125 e~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It 200 (384)
T PRK09330 125 ELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGIT 200 (384)
T ss_pred HcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 665 5556666555567888999999999999999999999999999999997767664 489999999999999999
Q ss_pred ccccCCCCCccchhhhhcccc
Q 013161 238 CCLRFPGQLNSDLRKLAVNLI 258 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~ 258 (448)
..+++||.+|.|+.++.+-|-
T Consensus 201 ~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 201 DLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHHhcCCcccCCHHHHHHHHh
Confidence 999999999999999988664
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.85 E-value=5.7e-21 Score=174.39 Aligned_cols=149 Identities=21% Similarity=0.332 Sum_probs=111.4
Q ss_pred CcccCCCceeecccC-------CCCCCccCcccchh-hhHHHHHHH-HHHHhhhcCCCCceeEEecCCCCccccchHHHH
Q 013161 82 GQIFRPDNFVFGQSG-------AGNNWAKGHYTEGA-ELIDAVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~-------~gnn~a~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~ll 152 (448)
+-+|||+++..-++- .-.+|..|.-.... +..++++|+ ||+++|+||.+||||++.++.+|+| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 446677776554432 22446666543333 334566775 9999999999999999999999988 9999999
Q ss_pred HHHHhhcCCcee-EEEEEecCCCCCC-----ccchhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchh
Q 013161 153 SKIREEYPDRMM-LTFSVFPSPKVSD-----TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN 226 (448)
Q Consensus 153 e~l~deyp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N 226 (448)
|+|+|||||+.+ +.+++.+...... ...+..|.++++.+|.++|++++|+.... +..+..+..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 5555554322111 12456899999999999999999997311 234556899
Q ss_pred HHHHHHhhcCcccccC
Q 013161 227 HLISATMSGVTCCLRF 242 (448)
Q Consensus 227 ~~ia~~i~~~t~~~r~ 242 (448)
+++|.+|.++|+|+|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999984
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.57 E-value=1.8e-14 Score=142.52 Aligned_cols=150 Identities=18% Similarity=0.285 Sum_probs=130.2
Q ss_pred CccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccc
Q 013161 101 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180 (448)
Q Consensus 101 ~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~ 180 (448)
.+.+.+..|++..++..+.|+..++..| -++++.++|||||+|.+|.+++.+++ .....++++++|+. .|...
T Consensus 70 GaGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~ 142 (338)
T COG0206 70 GAGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSP 142 (338)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCch
Confidence 3445688999999999999999999887 45899999999999999999999999 47788899999984 44457
Q ss_pred hhhHHHHHHHHHhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcccccCCCCCccchhhhhccccc
Q 013161 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP 259 (448)
Q Consensus 181 ~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P 259 (448)
+.-|+..++..|.+++|.+|+++|+.|.+... ...+ ...|+..|.++++.+.+++..+.-||.+|.|+.++.+-+-.
T Consensus 143 r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 143 RMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 78899999999999999999999999988765 3333 35688899999999999999999999999999999987665
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.51 E-value=8.3e-15 Score=124.36 Aligned_cols=65 Identities=28% Similarity=0.490 Sum_probs=50.3
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCcCCccccccccccccccC----CCCCCccceeecCCCCCc
Q 013161 2 REILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEA----SCGRFVPRAVLMDLEPGT 72 (448)
Q Consensus 2 ~EIitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pR~llvD~e~~~ 72 (448)
|||||||+|+.+|+||+||||.| |..+..+.. .+....+++|+||++ +..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~----~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPD----EKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCcc----ccCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999976 544432221 111245789999987 345999999999998874
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.33 E-value=2.7e-07 Score=78.23 Aligned_cols=113 Identities=26% Similarity=0.439 Sum_probs=84.2
Q ss_pred CccchhhhhccccccCCccccccccccccccccccccccCHHHHHH--hccCCCCcccccCCCCCcceeeecccCCcCCh
Q 013161 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ--QMWDAKNMMCAADPRHGRYLTASAMFRGKMST 323 (448)
Q Consensus 246 ~~~~~~~l~~~L~P~p~~~fl~~s~~p~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (448)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++.+++..+++.. ++++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 999999998752 33345556666 6788877776665543 677664 6778
Q ss_pred HHHHHHHHhhhccCC-cccccccC-CCcceeecCCCCCCCCcceEeecC-ChhhHHHHHHH
Q 013161 324 KEVDEQMINVQNKNS-SYFVEWIP-NNVKSSVCDIPPRGLSMASTFIGN-STSIQEMFRRV 381 (448)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l 381 (448)
.++.+.+..++.+.. ..|+.|.| ..+++. .+.+.++| +|+|...|+++
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~ 118 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRL 118 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCcccccc
Confidence 889888888876655 77899998 443321 35678999 99999988765
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.58 E-value=0.0014 Score=66.45 Aligned_cols=63 Identities=29% Similarity=0.223 Sum_probs=45.1
Q ss_pred eeEEecCCCCccccchHHHHHHHHhhc-----CCceeEEEEEecCCCCCC---ccchhhHHHHHHHHHhhc
Q 013161 133 FQVCHSLGGGTGSGMGTLLISKIREEY-----PDRMMLTFSVFPSPKVSD---TVVEPYNATLSVHQLVEN 195 (448)
Q Consensus 133 f~i~~s~~GGTGSG~~s~lle~l~dey-----p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e~ 195 (448)
++|+.|++||||||+--.++-.||+.+ ....+..+.++|...... .....-|+.=+|.+|.-.
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~ 220 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYL 220 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHH
Confidence 578899999999999999999999976 445688889999732111 123345776666666433
No 34
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=66.28 E-value=5.7 Score=34.09 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhcCCCCceeEEecCCCCcc
Q 013161 113 IDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 113 ~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTG 144 (448)
.+...++|+..+++++. +|++++.++ |||-
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp 70 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE 70 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH
Confidence 34456789999999999 999999999 7643
No 35
>PLN02847 triacylglycerol lipase
Probab=65.52 E-value=7.9 Score=41.80 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=42.4
Q ss_pred cCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHh--hcCCceeEEEE
Q 013161 103 KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMLTFS 168 (448)
Q Consensus 103 ~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~d--eyp~~~i~~~~ 168 (448)
+|++...+.+.+.+...|++.++++...+-+++-|||||| +++.+.-.|++ .|++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGG----VAALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGG----TAALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHH----HHHHHHHHHhcCCCCCCceEEEec
Confidence 3444444566667777888889999988888889999865 56666666665 45554444444
No 36
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=63.90 E-value=9.9 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCceeEEecCCCCcc
Q 013161 111 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTG 144 (448)
+-.+++.+++++.+++.+.-+|++++.++.|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 4456677888888999888999999999998865
No 37
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=62.82 E-value=14 Score=32.34 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=39.1
Q ss_pred CcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCcee
Q 013161 104 GHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM 164 (448)
Q Consensus 104 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i 164 (448)
|++.....+...+...+++...++..-+-+++-||+||+ ++..+...++...+.+.+
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~ 58 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLV 58 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCce
Confidence 555555667777777777777767777778888999754 677677777665433333
No 38
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=62.53 E-value=28 Score=31.82 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHH
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (448)
+...+.+.|+..+|+ .+. -++.+.+-|.. -.+..++-.||.+||...+ .+++|+...+..-. -..-.-+..
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~--~~~q~~y~~ 97 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWN--EANQERYQS 97 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCC--HHHHHHHHH
Confidence 334455667777774 232 23333333322 2355556678999997554 67889855444221 233445677
Q ss_pred HhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCc
Q 013161 192 LVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 192 l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
|.+.+|-++.+........ ..|..-|+.+...-..+.
T Consensus 98 il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~i 134 (177)
T PF06908_consen 98 ILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLI 134 (177)
T ss_dssp HHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEE
T ss_pred HHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEE
Confidence 7888898888866422110 124455666555544443
No 39
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=62.42 E-value=8.6 Score=33.09 Aligned_cols=27 Identities=30% Similarity=0.790 Sum_probs=21.8
Q ss_pred CccccchHHHHHHHHhhcCC-ceeEEEE
Q 013161 142 GTGSGMGTLLISKIREEYPD-RMMLTFS 168 (448)
Q Consensus 142 GTGSG~~s~lle~l~deyp~-~~i~~~~ 168 (448)
|-|.|+|..+++.||.++|+ ..+++..
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlG 34 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALG 34 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEe
Confidence 45679999999999999998 5666553
No 40
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=59.14 E-value=13 Score=34.83 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=48.7
Q ss_pred CCccCcccchhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCc
Q 013161 100 NWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (448)
Q Consensus 100 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~ 178 (448)
...+|++..-..+.+.+...++...++....+-++.-|||||+ +++.++-.|+..++...+ .+..+-.+..++.
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i-~~~tFg~P~vg~~ 171 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDV-TVYTFGQPRVGNA 171 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCce-EEEEeCCCCCCCH
Confidence 3456766666667777777888888888877778888999754 677777777776533333 3334434444543
No 41
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=56.12 E-value=27 Score=29.34 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccc
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~ 147 (448)
-.+++.+++++.+++.+.=+|++++.++-|||-.=.
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 356677888888888877789999999999976333
No 42
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=55.97 E-value=30 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCcc
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTG 144 (448)
-.+++.+++++.+++.+.-+|++++.++-|||-
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 345667778888888887789999999998864
No 43
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=49.32 E-value=13 Score=31.52 Aligned_cols=56 Identities=23% Similarity=0.372 Sum_probs=38.4
Q ss_pred ccCcccchh-hhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCC
Q 013161 102 AKGHYTEGA-ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 102 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~ 161 (448)
..|++..-. ...+.+.+.|++.+++.....-.+.-||+|| +++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 344444334 5667788888888887766555667789975 4777777777776654
No 44
>PRK13660 hypothetical protein; Provisional
Probab=43.91 E-value=1.2e+02 Score=27.77 Aligned_cols=109 Identities=16% Similarity=0.211 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHH
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (448)
+...+...|++.+|+ .+.=|++ |..=|.- =.+.-++-.||.+||...+ .+++|+...++.-. -..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi~--ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~--e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVII--SGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWN--EANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEE--CCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCC--HHHHHHHHH
Confidence 334455667777773 3432222 2111111 1255567779999997654 45778754443211 122334556
Q ss_pred HhhcCCeeEEecChhhhhhhcccccCCCCCccchhHHHHHHhhcCcc
Q 013161 192 LVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 192 l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|.+.+|-++.+...- ++ ....|..-|+.+...-..+.+
T Consensus 98 i~~~aD~v~~vs~~~-y~--------~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 98 ILKQADFVKSISKRP-YE--------SPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred HHHhCCEEEEecCCC-CC--------ChHHHHHHHHHHHHccCeEEE
Confidence 778899999885431 00 011256667766665554443
No 45
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.42 E-value=93 Score=31.40 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=56.1
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHH
Q 013161 108 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+.++.+.|+... +..+||+|+|+.+ |= -.++.+++.+-...+|-.+++=+..|....+.........++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--Tm-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--TM-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--hH-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566666667776655 5689999999766 32 456666766555556777777788887544443444444444
Q ss_pred HHHHHhhcCCeeEEecChhhhh
Q 013161 188 SVHQLVENADECMVLDNEALYD 209 (448)
Q Consensus 188 sl~~l~e~sd~~i~~~N~~l~~ 209 (448)
.+..-.... .++++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 443322233 455555555554
No 46
>PF03283 PAE: Pectinacetylesterase
Probab=40.40 E-value=49 Score=33.79 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=34.6
Q ss_pred cccchhhhHHHHHHHHHHH-hhhcCCCCceeEEecCCCCccccchHHH-HHHHHhhcCC
Q 013161 105 HYTEGAELIDAVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPD 161 (448)
Q Consensus 105 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~i~~s~~GGTGSG~~s~l-le~l~deyp~ 161 (448)
.+..|....+.+++.|... +.+. +-+++..+.+||. |+.+ ++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a---~~vlltG~SAGG~----g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNA---KQVLLTGCSAGGL----GAILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCccc---ceEEEeccChHHH----HHHHHHHHHHHHhcc
Confidence 4557888888888877666 4444 3447766666654 4444 8899999995
No 47
>PLN02408 phospholipase A1
Probab=40.12 E-value=57 Score=33.35 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCc
Q 013161 111 ELIDAVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (448)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~--lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~ 178 (448)
.+.+++.+.|++.+++... +.-.+.-||+||+ ++...+-.|+..++....+.+..|-.|..|+.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 4667788888888887754 2335566799754 77777888888877665555666666666654
No 48
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=39.91 E-value=29 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhcCC-CCceeEEecCCCC
Q 013161 113 IDAVLDVVRKEAENCDC-LQGFQVCHSLGGG 142 (448)
Q Consensus 113 ~~~~~d~ir~~~E~cD~-lqgf~i~~s~~GG 142 (448)
...+.++|++.+++++. =+|++++.++ ||
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Gg 70 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GS 70 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CC
Confidence 34456788888999866 7999999999 66
No 49
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=35.47 E-value=49 Score=26.94 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=39.4
Q ss_pred ecCChhhHHHHHH-------HHHHHHhhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 013161 368 IGNSTSIQEMFRR-------VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425 (448)
Q Consensus 368 l~N~t~i~~~l~~-------l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (448)
++|.++|...|.+ |++.-.++-.+|+|+-...+ .-....||+..|+.+..+|++=
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~E~lQd---kL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYYEGLQD---KLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888865 56777788888855432221 1346999999999999999753
No 50
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=35.15 E-value=41 Score=31.83 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=22.0
Q ss_pred EEecCCCCccccchHHHHHHHHhhcCCc
Q 013161 135 VCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 135 i~~s~~GGTGSG~~s~lle~l~deyp~~ 162 (448)
++-+++||+|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 4568999999998 45888999998755
No 51
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=30.91 E-value=1.7e+02 Score=29.31 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=55.3
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHH
Q 013161 108 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|++.+++ .+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+..|....+.........++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456666677777776663 79999999765 32 3455555544444 6777777778887544444444444555
Q ss_pred HHHHHhh--cCCeeEEecChhhhh
Q 013161 188 SVHQLVE--NADECMVLDNEALYD 209 (448)
Q Consensus 188 sl~~l~e--~sd~~i~~~N~~l~~ 209 (448)
.+....+ .....+.| |+.+++
T Consensus 133 ~~A~~~~~~~~gV~V~f-~~~i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVF-NDRIFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEE-CCEEec
Confidence 4443322 34456666 444544
No 52
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=29.21 E-value=1.8e+02 Score=28.96 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=46.6
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCc-cchhhHHH
Q 013161 108 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT-VVEPYNAT 186 (448)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~-~~~~yN~~ 186 (448)
...+.+.++.+.|++.+++ .+||+|+|+.+ |= -..+..+..+-+..+|-.+++=+..|....+.. ...-++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3455666666777777744 89999999765 32 234444554444446667777788887443333 33333444
Q ss_pred HHHHHHhhcCCeeEEecChhhhh
Q 013161 187 LSVHQLVENADECMVLDNEALYD 209 (448)
Q Consensus 187 lsl~~l~e~sd~~i~~~N~~l~~ 209 (448)
... .-.+..-.+++| |+.++.
T Consensus 128 ~~A-~~~~~~GV~v~f-~~~i~~ 148 (313)
T PF00710_consen 128 RVA-ASPAGPGVLVVF-NGRIYA 148 (313)
T ss_dssp HHH-HSGGTSSEEEEE-TTEEEE
T ss_pred HHH-hcccCCceEEEe-CCCccc
Confidence 333 332344444555 444544
No 53
>PTZ00489 glutamate 5-kinase; Provisional
Probab=29.11 E-value=2.4e+02 Score=27.44 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHhhcCCceeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCCeeEEecCh
Q 013161 155 IREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (448)
Q Consensus 155 l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~ 205 (448)
..+.+.+..+.+.-+++....-..-.+..|+.-++..|.+. .++|+-|.
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44455455556666666533333344556888888888886 56777544
No 54
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.01 E-value=29 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHH
Q 013161 115 AVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISK 154 (448)
Q Consensus 115 ~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~ 154 (448)
++++++|+.+++-..+ +|+|.|+|++++.+|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788999999976544 4567889998887755
No 55
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=28.06 E-value=35 Score=30.78 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhh--cccccccccccCCCCChhh
Q 013161 374 IQEMFRRVSEQFTAM--FRRKAFLHWYTGEGMDEME 407 (448)
Q Consensus 374 i~~~l~~l~~~~~~m--~~kkAflH~Y~~~Gmee~e 407 (448)
|...+.+|.+-+..- |..-.||+||++|+.||+.
T Consensus 97 vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~ 132 (167)
T COG1528 97 VTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK 132 (167)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 444444444443332 4667899999999987643
No 56
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=27.10 E-value=2.3e+02 Score=21.74 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhc--CCCCceeEEecCC----CCccccchHHHHHHHHhhcCCceeEEEEEec
Q 013161 115 AVLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (448)
Q Consensus 115 ~~~d~ir~~~E~c--D~lqgf~i~~s~~----GGTGSG~~s~lle~l~deyp~~~i~~~~v~P 171 (448)
+....++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 4445566666555 3567889999888 553 7777888887766666666554433
No 57
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=25.71 E-value=33 Score=16.52 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.8
Q ss_pred ccccccCC
Q 013161 255 VNLIPFPR 262 (448)
Q Consensus 255 ~~L~P~p~ 262 (448)
+.|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 58
>PLN02802 triacylglycerol lipase
Probab=25.46 E-value=1.3e+02 Score=32.20 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCc
Q 013161 111 ELIDAVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178 (448)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~--lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~ 178 (448)
...+.+++.|++.+++... ++-++.-||+||+ ++...+-.|+...+....+.+..|-++..|+.
T Consensus 309 S~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGA----LAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN~ 374 (509)
T PLN02802 309 SLSESVVGEVRRLMEKYKGEELSITVTGHSLGAA----LALLVADELATCVPAAPPVAVFSFGGPRVGNR 374 (509)
T ss_pred hHHHHHHHHHHHHHHhCCCCcceEEEeccchHHH----HHHHHHHHHHHhCCCCCceEEEEcCCCCcccH
Confidence 3567788888998887642 4446667899754 77777777877766543344555655566653
No 59
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=25.04 E-value=1.3e+02 Score=30.33 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCceeEEecCCCCcccc
Q 013161 111 ELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146 (448)
Q Consensus 111 ~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG 146 (448)
+-.+++.+++++.+++.+.=+|++++.++-|||-.=
T Consensus 40 ~~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N 75 (322)
T PRK15088 40 ENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFN 75 (322)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 345667777888888887778999999999997633
No 60
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=24.40 E-value=5e+02 Score=27.21 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCC---CccchhhHHHHH
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS---DTVVEPYNATLS 188 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~---~~~~~~yN~~ls 188 (448)
..+...+.|...+. .+.++++-|+.+.+.|+|+++.+.|++.|+..=-...+++.--.|..... -.+..+.|-...
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 44555555555442 23457999999999999999999886655553111122222222321111 112223333323
Q ss_pred HHHH-hhcCCeeEEecChh
Q 013161 189 VHQL-VENADECMVLDNEA 206 (448)
Q Consensus 189 l~~l-~e~sd~~i~~~N~~ 206 (448)
...+ ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 3223 23489999998775
No 61
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=23.47 E-value=3.1e+02 Score=28.52 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=53.4
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCC-CccchhhHHH
Q 013161 108 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVS-DTVVEPYNAT 186 (448)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 186 (448)
...+.+..+.+.|++.++ +..+||+|+|+.+ |= -.++..+..+-+..|+-.+++=+-.|....+ +....-++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345566666777777665 3469999999765 33 4455555554444466667777777864433 3333334444
Q ss_pred HHHHHHhhcCCeeEEecCh
Q 013161 187 LSVHQLVENADECMVLDNE 205 (448)
Q Consensus 187 lsl~~l~e~sd~~i~~~N~ 205 (448)
. +..- ..+-..++|++.
T Consensus 195 ~-~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 R-AATS-PIAEVTVVMHGE 211 (404)
T ss_pred H-HHhC-CCCcEEEEECCc
Confidence 3 3322 455566777654
No 62
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=23.13 E-value=1.1e+02 Score=29.88 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCccCcccchhhhHHHHHH-HHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEE
Q 013161 99 NNWAKGHYTEGAELIDAVLD-VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFS 168 (448)
Q Consensus 99 nn~a~G~~~~g~~~~~~~~d-~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~ 168 (448)
-.|+-|||..+.+-.++.+. ++...+|+++-=.| .=+-.+|.||| |++ -.+...| +..+.++.
T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~----~~~a~~~-g~~v~git 92 (273)
T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLA----IYAAERY-GCHVTGIT 92 (273)
T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHH----HHHHHHH---EEEEEE
T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHH----HHHHHHc-CcEEEEEE
Confidence 34666787777776666664 57888888863334 45557777766 443 3455556 44444443
No 63
>COG4053 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.78 E-value=1.4e+02 Score=27.48 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecC
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 172 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~ 172 (448)
.-..+.|.+|+..|.-|.+.|+ --+..| .|-|++-..++.-.++||+..|++|-.+-.
T Consensus 67 vN~aifevlr~y~eg~~Dl~Gi--Se~pdg-AGEG~SYAeAa~~~seY~Davi~aFDTYgg 124 (244)
T COG4053 67 VNKAIFEVLRKYAEGFDDLRGI--SEDPDG-AGEGLSYAEAASPISEYGDAVIIAFDTYGG 124 (244)
T ss_pred HHHHHHHHHHHHhhcccccccc--cCCCCc-CCCCchHhhhcCchhhcCceEEEEEecccc
Confidence 3344778999999999999775 335554 477777666666679999999988877653
No 64
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.20 E-value=3e+02 Score=27.48 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHHH
Q 013161 109 GAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS 188 (448)
Q Consensus 109 g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 188 (448)
..+.+..+.+.|+..+. -+..+||+|+|+.+ |= -.++..+..+-+..+|-.+++=+..|....+.........++.
T Consensus 58 t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALA-DDGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 34445555555554433 25789999999765 32 3455555554455566677777778864433333333333333
Q ss_pred HHHHhh--cCCeeEEecChhhhh
Q 013161 189 VHQLVE--NADECMVLDNEALYD 209 (448)
Q Consensus 189 l~~l~e--~sd~~i~~~N~~l~~ 209 (448)
+..-.+ ..-..++| |+.++.
T Consensus 134 ~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 134 VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred HHcCcccCCCEEEEEE-CCEeee
Confidence 332222 22344444 665654
No 65
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=22.14 E-value=2.3e+02 Score=28.54 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=56.6
Q ss_pred chhhhHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCCCCccchhhHHHH
Q 013161 108 EGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|+...+ ..+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+-.|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 345666667777777665 389999999766 33 4455556554444 6777777788887544444444444444
Q ss_pred HHHHHhhc-----CCeeEEecChhhhhh
Q 013161 188 SVHQLVEN-----ADECMVLDNEALYDI 210 (448)
Q Consensus 188 sl~~l~e~-----sd~~i~~~N~~l~~~ 210 (448)
.+....+. -..++++-|+.+++-
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEeec
Confidence 44433221 224555566666553
No 66
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=20.97 E-value=3.7e+02 Score=28.27 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCC---CCccchhhHHHHH
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV---SDTVVEPYNATLS 188 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~---~~~~~~~yN~~ls 188 (448)
..+...+.|+..+..-..+.++-|+.+.+.|+|+.+.+.+++.|- ..++..-..|.... ...+..+.+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 455555666666554346777899999998988777777777653 44445544443211 1233444444333
Q ss_pred HHHHhhcCCeeEEecChhh
Q 013161 189 VHQLVENADECMVLDNEAL 207 (448)
Q Consensus 189 l~~l~e~sd~~i~~~N~~l 207 (448)
..-....+|+.+-+|.|+=
T Consensus 233 ~~v~~~~aDlgia~DgDaD 251 (464)
T COG1109 233 KAVKEHGADLGIAFDGDAD 251 (464)
T ss_pred HHHHhcCCCEEEEecCCCc
Confidence 3333336999999998863
No 67
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=20.68 E-value=1.2e+02 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCceeEEecCCCCccccchHHHHHHHHhhcCCceeE
Q 013161 130 LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165 (448)
Q Consensus 130 lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~ 165 (448)
+..+.+.-+.= |-|+|+.|+..+.+.++++.+.
T Consensus 29 i~~~~v~~~~r---g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 29 IGYLAVDPEYR---GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp EEEEEE-GGGT---TSSHHHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECHHHc---CCCHHHHHHHHHHHHcCCCcEE
Confidence 33344444444 4589999999999999887764
No 68
>PLN02371 phosphoglucosamine mutase family protein
Probab=20.15 E-value=5e+02 Score=28.32 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=43.1
Q ss_pred CCCceeEEecCCCCccccchHHHHHHHHhhcCCceeEEEEEecCCCC---CCccchhhHHHHHHHHHh-hcCCeeEEecC
Q 013161 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV---SDTVVEPYNATLSVHQLV-ENADECMVLDN 204 (448)
Q Consensus 129 ~lqgf~i~~s~~GGTGSG~~s~lle~l~deyp~~~i~~~~v~P~~~~---~~~~~~~yN~~lsl~~l~-e~sd~~i~~~N 204 (448)
.++++-|+.+.+.|+|+++.+.+++.|--+ .+...-.-|.... .-....+.|--.....+. ..+|+.|.+|-
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~Dg 335 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDT 335 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 357999999999999989989888877322 1112212222111 111222334333333333 34899999998
Q ss_pred hh
Q 013161 205 EA 206 (448)
Q Consensus 205 ~~ 206 (448)
|+
T Consensus 336 Da 337 (583)
T PLN02371 336 DV 337 (583)
T ss_pred Cc
Confidence 76
No 69
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=20.04 E-value=3.9e+02 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCceeEEecCCCCccccchHHHHHHH
Q 013161 112 LIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 155 (448)
Q Consensus 112 ~~~~~~d~ir~~~E~cD~lqgf~i~~s~~GGTGSG~~s~lle~l 155 (448)
..+...+.|+..+. ...++|-|+.+.+.|+|+++.+.+++.|
T Consensus 157 ~~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~~~~~ll~~l 198 (448)
T PRK14318 157 ATDRYLRHLLGALP--TRLDGLKVVVDCAHGAASGVAPEAYRAA 198 (448)
T ss_pred HHHHHHHHHHHHhc--cccCCCEEEEECCCchHHHHHHHHHHHc
Confidence 44555555555553 2457999999999999999999998887
Done!