Query 013162
Match_columns 448
No_of_seqs 89 out of 113
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 05:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013162.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013162hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 41.7 7.2 0.00053 38.0 3.3 27 124-150 579-610 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 38.8 9.5 0.0007 36.5 3.6 36 120-157 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 34.1 14 0.001 26.9 3.1 37 403-439 9-45 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 29.7 31 0.0023 24.6 4.3 34 404-437 13-46 (54)
5 d1ffvb2 d.133.1.1 (B:147-803) 28.0 24 0.0017 34.0 4.5 38 119-157 615-652 (657)
6 d2ia7a1 d.373.1.1 (A:23-133) U 23.0 24 0.0018 26.8 2.8 38 122-159 8-57 (111)
7 d1n62b2 d.133.1.1 (B:147-809) 22.9 32 0.0023 33.0 4.3 44 115-159 611-660 (663)
8 d1fnoa3 d.58.19.1 (A:208-320) 22.6 17 0.0012 29.2 1.9 40 391-447 73-113 (113)
9 d1x6va3 c.37.1.4 (A:34-228) Ad 22.3 22 0.0016 26.9 2.4 36 307-342 23-63 (195)
10 d1ly1a_ c.37.1.1 (A:) Polynucl 21.1 54 0.0039 23.8 4.4 38 309-346 8-46 (152)
11 d1b6aa1 a.4.5.25 (A:375-448) M 20.7 26 0.0019 25.5 2.5 27 401-427 23-49 (74)
12 d1bnda_ g.17.1.3 (A:) Brain-de 20.6 32 0.0023 27.6 3.1 29 162-190 3-35 (109)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=41.71 E-value=7.2 Score=37.96 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=21.7
Q ss_pred HHHHHHhHhHHhhhcc----cccc-CCCchhH
Q 013162 124 AISNAITNLSATVFGE----LWRL-EPLAPQK 150 (448)
Q Consensus 124 AiSNAITNL~AtVFGe----lwrL-EPL~~ek 150 (448)
||.|||-|....-|.. .+.+ =|+.|||
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPer 610 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEK 610 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHH
Confidence 9999999999988873 4444 3999997
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=38.82 E-value=9.5 Score=36.51 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhHhHHhhhc-cccccCCCchhHHhhhhhh
Q 013162 120 CTALAISNAITNLSATVFG-ELWRLEPLAPQKKAMWRRE 157 (448)
Q Consensus 120 ~tALAiSNAITNL~AtVFG-elwrLEPL~~ekK~mWrRE 157 (448)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4667999999997653 22 34444 9999986554443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.10 E-value=14 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhcccchhhhhhh
Q 013162 403 AETLLHSLRLRFPGLPQTALDMNKIQYNKVLARSFCI 439 (448)
Q Consensus 403 AEtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aILE 439 (448)
+|..+..||.-||++-...+..-=+..|-+|+.+|=.
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~ 45 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINS 45 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4566899999999999999999999999999988743
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.68 E-value=31 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhcccchhhhh
Q 013162 404 ETLLHSLRLRFPGLPQTALDMNKIQYNKVLARSF 437 (448)
Q Consensus 404 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI 437 (448)
+..+..||.-||++....+..-=...|-+|+.+|
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4578999999999999999888888888888876
No 5
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=28.00 E-value=24 Score=33.98 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhh
Q 013162 119 VCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRRE 157 (448)
Q Consensus 119 V~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrRE 157 (448)
+++|=||.|||-|-... .|--.+==|+.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 45778899999987433 365444449999986665554
No 6
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=23.03 E-value=24 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHHHhHhHHhhhcc----------cccc--CCCchhHHhhhhhhcc
Q 013162 122 ALAISNAITNLSATVFGE----------LWRL--EPLAPQKKAMWRREMQ 159 (448)
Q Consensus 122 ALAiSNAITNL~AtVFGe----------lwrL--EPL~~ekK~mWrREmd 159 (448)
.=||-++|-||--|-+|| +|.| ||+.+..+...++++.
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I~ 57 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEVK 57 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHHH
Confidence 347889999999999999 8888 9999999999999884
No 7
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=22.95 E-value=32 Score=33.03 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCcch------hHHHHHHHHHhHhHHhhhccccccCCCchhHHhhhhhhcc
Q 013162 115 GGKGV------CTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMQ 159 (448)
Q Consensus 115 ggKGV------~tALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmd 159 (448)
|.||| ++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 611 GakGvGE~~~~~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 611 GAKGVGESPHVGGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp SBCCCTTHHHHHHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred CceecccccccchHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 55665 478899999998764 578767777999999866667764
No 8
>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}
Probab=22.59 E-value=17 Score=29.20 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=26.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhcccch-hhhhhhhccccccc
Q 013162 391 ADSEKNHSLAHRAETLLHSLRLRFPGLPQTALDMNKIQYNKVL-ARSFCILHITDSYY 447 (448)
Q Consensus 391 ~d~dK~e~laeRAEtlL~~LKqRfPgLpQT~LD~sKIQyNkDV-G~aILE~~~~~~~~ 447 (448)
-|.| ++.|++|.+.|....+ +.|+.. |.+.++|.|+|+||
T Consensus 73 RDfd-~~~f~~rk~~l~~~~~----------------~~n~~~~~~~~v~~~i~dqYy 113 (113)
T d1fnoa3 73 RDFD-RKQFEARKRKMMEIAK----------------KVGKGLHPDCYIELVIEDSYY 113 (113)
T ss_dssp EESS-HHHHHHHHHHHHHHHH----------------HHTTTCCTTCCEEEEEEEEEC
T ss_pred eeCC-HHHHHHHHHHHHHHHH----------------HHHHhhCCCcEEEEEEecccC
Confidence 3444 4567888877655432 245553 56789999999998
No 9
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.33 E-value=22 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHhhcccCCccchhHHHHHHh-----hcCCCChHHHhhhcC
Q 013162 307 YLETLPKNGKACLGDIIYRYI-----TADQFSPECLLDCLD 342 (448)
Q Consensus 307 y~esLPKnGrasLGD~iYr~i-----T~d~Fspe~lL~~ld 342 (448)
||--+|-+||++||..|-+.+ ..+.+..+++.....
T Consensus 23 ~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~ 63 (195)
T d1x6va3 23 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN 63 (195)
T ss_dssp EEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccc
Confidence 455689999999999998876 455666776665433
No 10
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=21.13 E-value=54 Score=23.81 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=28.3
Q ss_pred hhcccCCccchhHHHHHHh-hcCCCChHHHhhhcCCCch
Q 013162 309 ETLPKNGKACLGDIIYRYI-TADQFSPECLLDCLDLSSE 346 (448)
Q Consensus 309 esLPKnGrasLGD~iYr~i-T~d~Fspe~lL~~ldLssE 346 (448)
--+|-+||++|...|.+.. ..-.++++.+...+.....
T Consensus 8 ~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~ 46 (152)
T d1ly1a_ 8 IGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEE 46 (152)
T ss_dssp ECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCC
T ss_pred ECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccc
Confidence 3578999999999887655 5778889888766544433
No 11
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=26 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCCCCCcchhhhhhh
Q 013162 401 HRAETLLHSLRLRFPGLPQTALDMNKI 427 (448)
Q Consensus 401 eRAEtlL~~LKqRfPgLpQT~LD~sKI 427 (448)
..|+.+|..|+.+|+.||.+-=-..++
T Consensus 23 ~~ar~lL~~I~~~f~tLPFs~R~L~~~ 49 (74)
T d1b6aa1 23 PRTKHLLNVINENFGTLAFCRRWLDRL 49 (74)
T ss_dssp HHHHHHHHHHHHHTTTSCEEHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHhhc
Confidence 357889999999999999986555554
No 12
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=32 Score=27.55 Aligned_cols=29 Identities=38% Similarity=0.384 Sum_probs=26.0
Q ss_pred eeccceeEEee----ecceecCCCceEEeeccc
Q 013162 162 LCVSDSIVELV----PSIQQFPGGGTYEVMATR 190 (448)
Q Consensus 162 LSVsD~IVElv----Ps~Q~~~dG~~~EvM~tr 190 (448)
+||||.+-+.| |+.-+.-.|..+|||..-
T Consensus 3 ~svCdsvs~Wvt~~nk~ta~D~~G~~Vtvl~~v 35 (109)
T d1bnda_ 3 LSVCDSISEWVTAADKKTAVDMSGGTVTVLEKV 35 (109)
T ss_dssp EESSCEEEEEEEHHHHCEEEBTTSCEEEECSEE
T ss_pred cccccceEEEEEccCcceeEeCCCCEEEEEEEE
Confidence 79999999999 888888899999999754
Done!