BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013163
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 93.2 bits (230), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 84 ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
+S S+ DYY +LGV +NA+ EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYEVL
Sbjct: 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
Query: 144 DDEKRSVYDQVG 155
D+ KR YD G
Sbjct: 62 DEVKRKQYDAYG 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 92.0 bits (227), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
+ +DYY++LGV+K A EI+KAY LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
KR+ YDQ GH AF
Sbjct: 61 KRAAYDQYGHAAF 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 91.3 bits (225), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
+ +DYY++LGV+K A EI+KAY LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
KR+ YDQ GH AF
Sbjct: 61 KRAAYDQYGHAAF 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
+ +DYY++LGV+K A EI+KAY LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
KR+ YDQ GH AF
Sbjct: 61 KRAAYDQYGHAAF 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 80.9 bits (198), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 91 YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
YYD+LGV K+A+ +IKKA++ LA K HPD NK P+AE KF+E+++AYE L D +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKE 67
Query: 151 YDQVGHEAF 159
YD +GH AF
Sbjct: 68 YDTLGHSAF 76
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 195 RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSG 254
R G+D+K + S E +G T + ++ C+ C C C G G
Sbjct: 6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCNGQG 64
Query: 255 MESIHSGFMSINQ----TCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDN 308
++ + + Q C C GTG II + CKSC G +V K +++ + PG+ +
Sbjct: 65 IKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKD 124
Query: 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQV 368
+ + VF+ PGD+ + R F+R+G ++ ++ + + AI GG +
Sbjct: 125 GQRI-VFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFAL 183
Query: 369 PTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN 418
++GD + + + PG PG + V++ KG+ +G+ + F + P N
Sbjct: 184 EHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPEN 236
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 78.2 bits (191), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 82 GTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYE 140
G++ M+ +YY+VLGV +A+ +IKKAY LA + HPD N D+ EAEKKF+ VS+AYE
Sbjct: 4 GSSGMA--NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
Query: 141 VLKDDEKRSVYDQVGHEAF 159
VL D +KRS+YD+ G +++
Sbjct: 62 VLSDSKKRSLYDRAGCDSW 80
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 78.2 bits (191), Expect = 9e-15, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
S S Y VLG++KNAT+ +IKK+Y LA K HPD N D+PEA KF+E++ A+ +L D
Sbjct: 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72
Query: 145 DEKRSVYDQVG 155
KR++YD+ G
Sbjct: 73 ATKRNIYDKYG 83
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVL 355
K++ + I GV + + +++ G +G GDL++ I + P+F G N+ + L
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 356 SVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSI 415
+ +A LG + VPTL ++L V PG+Q GQ++ +K KG+ ++ GD + + +
Sbjct: 241 APWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKT--HTGDLFAVIKIVM 298
Query: 416 PTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
PT ++ REL ++ A E +D R G +
Sbjct: 299 PTKPDEKARELWQQLAAAE-ASFDPRKTWGKA 329
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 23/152 (15%)
Query: 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
+M +DYY +LGV IK AY LA+K HPD +K++ +AE KF+++++A+EVLKD
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKD 82
Query: 145 DEKRSVYDQV---------GHEAFVHQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIFR 195
+++R+ YDQ+ G + H+++ DIF+ ++F + R
Sbjct: 83 EQRRAEYDQLWQHRNDPGFGRQRQTHEQS--------YSQQDFDDIFS--SMFGQQAHQR 132
Query: 196 NRMS---GQDVKVAVELSFMEAVQGCTKTVTF 224
R G D+++ V + E + T+T+++
Sbjct: 133 RRQHAARGHDLEIEVAVFLEETLAEQTRTISY 164
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 85 SMSARDY--YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVL 142
S+SA D+ Y VLGV++ A+ ++IKKAY LA++ HPD NK DP AE +F ++SKAYE+L
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEIL 69
Query: 143 KDDEKRSVYDQVG 155
++EKR+ YD G
Sbjct: 70 SNEEKRTNYDHYG 82
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 75.5 bits (184), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 91 YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
YYDVLGV +A+ +E+KKAY +A K HPD N P+ ++F+++S+AYEVL D++KR +
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 151 YDQVGHE 157
YDQ G E
Sbjct: 67 YDQGGEE 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 75.1 bits (183), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 91 YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEKRS 149
YY++L V ++A+A +IKKAY A + HPD N D+ E AEKKF+EV++AYEVL D KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 150 VYDQVGHEAF 159
+YD+ G E
Sbjct: 64 IYDRYGREGL 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 73.6 bits (179), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 91 YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
YYDVLGV NAT E+KKAY LA K HPD N P +KF+++S+AYEVL D +KR +
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKN---PNEGEKFKQISQAYEVLSDAKKREL 64
Query: 151 YDQVGHE 157
YD+ G +
Sbjct: 65 YDKGGEQ 71
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 83 TASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEV 141
+ S DYY+VL V + A++ IKKAY LA K HPD N ++ EAE++F++V++AYEV
Sbjct: 3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEV 62
Query: 142 LKDDEKRSVYDQVG 155
L D +KR +YD+ G
Sbjct: 63 LSDAKKRDIYDRYG 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
+DYY LG+ + A+ EIK+AY A + HPD NK +P AE+KF+E+++AY+VL D K
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 148 RSVYDQVGHEAF 159
R ++D+ G E
Sbjct: 61 REIFDRYGEEGL 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 51/71 (71%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
+++Y +LGV+K A++ EI++A+ LA KLHPD N ++P A F ++++AYEVLKD++ R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 149 SVYDQVGHEAF 159
YD+ G +
Sbjct: 81 KKYDKYGEKGL 91
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 51/71 (71%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
+++Y +LGV+K A++ EI++A+ LA KLHPD N ++P A F ++++AYEVLKD++ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 149 SVYDQVGHEAF 159
YD+ G +
Sbjct: 62 KKYDKYGEKGL 72
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
+DYY ++GV IK AY LA+K HPD +K+ P+AE +F+EV++A+EVL D+++R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRR 63
Query: 149 SVYDQV 154
+ YDQ+
Sbjct: 64 AEYDQM 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 84 ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
+S S+ DYY++LGV++ A+ ++KKAY LA K HPD N P A + F+ + AY VL
Sbjct: 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLS 60
Query: 144 DDEKRSVYDQVG 155
+ EKR YDQ G
Sbjct: 61 NPEKRKQYDQFG 72
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 92 YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVY 151
YD+LGV+ +A E+KK Y A K HPD D E KF+E+S+A+E+L D +KR +Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQKREIY 67
Query: 152 DQVGHEA 158
DQ G EA
Sbjct: 68 DQYGLEA 74
>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|B Chain B, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|C Chain C, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|D Chain D, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|E Chain E, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|F Chain F, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|G Chain G, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|H Chain H, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|I Chain I, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|J Chain J, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|K Chain K, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
pdb|3I38|L Chain L, Structure Of A Putative Chaperone Protein Dnaj From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 109
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 340 PVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTR 399
P+F G N+ + L+ +A LG + VPTL ++L V PG+Q GQ++ +K KG+ ++
Sbjct: 5 PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64
Query: 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
GD + + PT ++ REL ++ A E +D R G +
Sbjct: 65 T--HTGDLFAVIKIVXPTKPDEKARELWQQLAAAE-ASFDPRKTWGKA 109
>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
Subfamily A Menber 3
Length = 104
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%)
Query: 200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMESIH 259
G +EL+F +A +G K T CE C C C GSGME+I+
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60
Query: 260 SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK 293
+G + TCR+CGG G II + C C+GA K
Sbjct: 61 TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAK 94
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 92 YDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDDEK 147
YDVL VN+ ++ KAY LA+K HPD K+ E AE++F+ ++ AYE LKDDE
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 148 RSVYD 152
++ YD
Sbjct: 78 KTNYD 82
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
G S S YD+LGV AT ++IK AYY HPD N EA ++F +S+AY
Sbjct: 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68
Query: 141 VLKDDEKRSVYDQ 153
VL R YD+
Sbjct: 69 VLGSATLRRKYDR 81
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 298 VKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSV 357
V+++I PG + L G + G PGDL + I+ + P F R+ ++ + +
Sbjct: 44 VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 358 TQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSI 415
+A+ G T V TL ++ + ++ P + ++ N+G +N GD + F++
Sbjct: 104 VRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICF 163
Query: 416 PTNLTQRQRELIEE 429
P +LT Q++LI+E
Sbjct: 164 PKSLTPEQKKLIKE 177
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
F G N P D+ +K + +F+R+G+++ + +S+ +A+ G T+ VPTL G
Sbjct: 63 FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 122
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
VV K +RPG + PG+ + L + GD + F V P + Q R +
Sbjct: 123 TIPVVFKDVIRPGMRRKVPGEGLPL------PKTPEKRGDLIIEFEVIFPERIPQTSRTV 176
Query: 427 IEE 429
+E+
Sbjct: 177 LEQ 179
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
F G N P D+ +K + +F+R+G+++ + +S+ +A+ G T+ VPTL G
Sbjct: 70 FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 129
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
VV K +RPG + PG+ + L + GD + F V P + Q R +
Sbjct: 130 TIPVVFKDVIRPGMRRKVPGEGLPL------PKTPEKRGDLIIEFEVIFPERIPQTSRTV 183
Query: 427 IEE 429
+E+
Sbjct: 184 LEQ 186
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
F G N P D+ +K + +F+R+G+++ + +S+ +A+ G T+ VPTL G
Sbjct: 61 FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 120
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
VV K +RPG + PG+ + L K GD + F V P + Q R +
Sbjct: 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKR------GDLIIEFEVIFPERIPQTSRTV 174
Query: 427 IEE 429
+E+
Sbjct: 175 LEQ 177
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
S DYY +LG ++ ++ +I + A + HPD + ++P+A + FQ++ KA E+L +
Sbjct: 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN 75
Query: 145 DEKRSVYDQ 153
+E R+ YD
Sbjct: 76 EESRARYDH 84
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD---DPEAEKKFQEVSKAYEVLKDD 145
RDYY +LGV +NA EI KAY LA + HPD ++ +AEKKF +++ A EVL D
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 146 EKRSVYD 152
E R +D
Sbjct: 442 EMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD---DPEAEKKFQEVSKAYEVLKDD 145
RDYY +LGV +NA EI KAY LA + HPD ++ +AEKKF +++ A EVL D
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 146 EKRSVYD 152
E R +D
Sbjct: 442 EXRKKFD 448
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 80 IHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQ 133
+ M +D+Y +LG + +A S++K+ Y L HPD D E +KF
Sbjct: 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 134 EVSKAYEVLKDDEKRSVYD 152
E+ +A+++L ++E + YD
Sbjct: 61 EIDQAWKILGNEETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQEVSKAYEVL 142
+D+Y +LG + +A S++K+ Y L HPD D E +KF E+ +A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 143 KDDEKRSVYD 152
++E + YD
Sbjct: 76 GNEETKKKYD 85
>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The
Escherichia Coli Chaperone Protein Dnaj
Length = 79
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 219 TKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMESIHSGFMSINQTCRQCGGTGHI 278
TK + T C+ C C C GSG + GF ++ QTC C G G +
Sbjct: 3 TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62
Query: 279 ITNWCKSCKG 288
I + C C G
Sbjct: 63 IKDPCNKCHG 72
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 287 KGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREG 346
KG + + + PG + G +P + L I+ + P F+R+G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 347 ANIHVDSVLSVTQAILGGTIQVPTLTGDVVL--KVRPGTQPGQKVVLKNKGIKT-RNSFS 403
++ LS +++LG + + T+ G + +V+P QP Q +G+ T +N
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP-VQPSQTSTYPGQGMPTPKNPSQ 145
Query: 404 FGDQYVHFNVSIPTNLTQRQRELIEE 429
G+ V + V P +L Q+ I+E
Sbjct: 146 RGNLIVKYKVDYPISLNDAQKRAIDE 171
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKT 398
F+R+G ++ ++ + + AI GG + ++GD + + + PG PG + V++ KG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 399 RNSFSFGDQYVHFNVSIPTN 418
+G+ + F + P N
Sbjct: 62 PKYGGYGNLIIKFTIKFPEN 81
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 287 KGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREG 346
KG + + + PG + G +P + L I+ + P F+R+G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 347 ANIHVDSVLSVTQAILGGTIQVPTLTGDVVL--KVRPGTQPGQKVVLKNKGIKT-RNSFS 403
++ LS +++LG + + T+ G + +V+P QP Q +G+ T +N
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP-VQPSQTSTYPGQGMPTPKNPSQ 145
Query: 404 FGDQYVHFNVSIPTNLTQRQRELIE 428
G+ V + V P +L Q+ I+
Sbjct: 146 RGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVL 142
+++D +D+LGV A+ E+ KAY LA LHPD P +E F+ V A L
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTAL 79
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 88 ARDYYDVLG--VNKNATASEIKKAYYGLAKKLHPD-----TNKDDPEAEKKFQEVSKAYE 140
A +Y+++ G + S + + L K+ HPD + +D A ++ +++ AY+
Sbjct: 3 AXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQ 62
Query: 141 VLKDDEKRSVY 151
LKD +R+ Y
Sbjct: 63 TLKDPLRRAEY 73
>pdb|3KSK|A Chain A, Crystal Structure Of Single Chain Pvuii
pdb|3KSK|B Chain B, Crystal Structure Of Single Chain Pvuii
Length = 324
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT 372
K++ SGG+ PD N+ +L+ I+ +D + G N + Q G +QV +T
Sbjct: 154 KIYGSGGSHPDLNKLLELWPHIQEYQDLALKH-GIN-------DIFQDNGGKLLQVLLIT 205
Query: 373 GDVVLKVRPGTQ----PGQKVVLKNKGIKTRNSFS 403
G VL R G GQ+ LK+ I FS
Sbjct: 206 GLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFS 240
>pdb|2BJ1|A Chain A, Nikr In Open Conformation And Nickel Bound To
High-Affinity Sites
pdb|2BJ1|B Chain B, Nikr In Open Conformation And Nickel Bound To
High-Affinity Sites
pdb|2BJ3|A Chain A, Nikr-Apo
pdb|2BJ3|B Chain B, Nikr-Apo
pdb|2BJ3|C Chain C, Nikr-Apo
pdb|2BJ3|D Chain D, Nikr-Apo
pdb|2BJ7|A Chain A, Nikr In Closed Conformation And Nickel Bound To High-
Affinity Sites
pdb|2BJ7|B Chain B, Nikr In Closed Conformation And Nickel Bound To High-
Affinity Sites
pdb|2BJ8|A Chain A, Nikr In Closed Conformation And Nickel Bound To High And
Low-Affinity Sites
pdb|2BJ8|B Chain B, Nikr In Closed Conformation And Nickel Bound To High And
Low-Affinity Sites
pdb|2BJ9|A Chain A, Nikr With Bound Nickel And Phosphate
pdb|2BJ9|B Chain B, Nikr With Bound Nickel And Phosphate
Length = 138
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 407 QYVHFNVSIPTNLTQRQRELIEEFAKEERGE 437
+ + F++SIP+ L ++ ++IEE E R E
Sbjct: 2 ELIRFSISIPSKLLEKFDQIIEEIGYENRSE 32
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 93 DVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
D+LG+ ++A + ++KAY K+ HPD D E+K ++++ Y+ ++D K
Sbjct: 12 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVK 64
>pdb|2NY6|A Chain A, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
Length = 317
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 277 HIITNWCKSCKGARVVKGSKSVK--------LDIMPGVDNNETLKVFRSGGADPDGNQPG 328
II WCK CK S ++ L G ++N ++FR GG D N
Sbjct: 247 QIINMWCKVCKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRS 306
Query: 329 DLY 331
+LY
Sbjct: 307 ELY 309
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 84 ASMSARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQE-----VS 136
A RDY+ + N++ ++++ Y L + +HPD + EK F E V+
Sbjct: 38 APDPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVN 97
Query: 137 KAYEVLKDDEKRSVY 151
AY+ L R +Y
Sbjct: 98 DAYKTLLAPLSRGLY 112
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 93 DVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
D+LG+ ++A + ++KAY K+ HPD D E+K ++++ Y+ ++D
Sbjct: 15 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,174,635
Number of Sequences: 62578
Number of extensions: 475150
Number of successful extensions: 1098
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1028
Number of HSP's gapped (non-prelim): 54
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)