Query 013163
Match_columns 448
No_of_seqs 396 out of 2613
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 01:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.4E-95 7E-100 721.3 33.5 339 86-434 1-351 (371)
2 PRK14296 chaperone protein Dna 100.0 3.3E-83 7.2E-88 651.7 36.3 342 88-434 3-362 (372)
3 PRK14288 chaperone protein Dna 100.0 5.2E-83 1.1E-87 650.1 35.3 335 88-434 2-346 (369)
4 PRK14286 chaperone protein Dna 100.0 3.1E-82 6.7E-87 645.0 36.1 341 88-434 3-358 (372)
5 PRK14279 chaperone protein Dna 100.0 5.3E-82 1.1E-86 647.0 35.9 345 87-434 7-379 (392)
6 PRK14285 chaperone protein Dna 100.0 1.1E-80 2.5E-85 632.1 35.6 343 88-435 2-355 (365)
7 PRK14277 chaperone protein Dna 100.0 1.1E-80 2.4E-85 636.9 35.2 344 88-435 4-367 (386)
8 PRK14298 chaperone protein Dna 100.0 1.9E-80 4.1E-85 632.5 34.9 337 88-434 4-352 (377)
9 PRK14287 chaperone protein Dna 100.0 1.7E-80 3.6E-85 632.1 34.2 335 88-435 3-350 (371)
10 PRK14301 chaperone protein Dna 100.0 3.3E-80 7.1E-85 630.4 36.2 339 88-434 3-351 (373)
11 PRK14284 chaperone protein Dna 100.0 2.9E-80 6.2E-85 634.8 34.8 345 89-435 1-368 (391)
12 PRK14278 chaperone protein Dna 100.0 4.6E-80 9.9E-85 630.3 35.3 335 88-434 2-351 (378)
13 PRK14294 chaperone protein Dna 100.0 5.9E-80 1.3E-84 627.8 35.0 340 88-436 3-353 (366)
14 PRK14295 chaperone protein Dna 100.0 9.7E-80 2.1E-84 629.7 36.6 342 87-434 7-373 (389)
15 PRK14280 chaperone protein Dna 100.0 8.9E-80 1.9E-84 628.2 35.0 339 88-434 3-354 (376)
16 PRK14297 chaperone protein Dna 100.0 1.4E-79 3E-84 628.0 36.2 343 88-435 3-360 (380)
17 PRK14281 chaperone protein Dna 100.0 1.7E-79 3.7E-84 629.9 35.6 345 88-433 2-372 (397)
18 PRK10767 chaperone protein Dna 100.0 2.2E-79 4.7E-84 625.4 35.5 338 88-433 3-348 (371)
19 PRK14276 chaperone protein Dna 100.0 2.4E-79 5.1E-84 625.9 35.0 340 88-434 3-357 (380)
20 PRK14282 chaperone protein Dna 100.0 9.4E-79 2E-83 619.6 36.8 341 88-433 3-363 (369)
21 PTZ00037 DnaJ_C chaperone prot 100.0 1E-78 2.2E-83 624.7 32.9 331 85-433 24-366 (421)
22 PRK14300 chaperone protein Dna 100.0 2.3E-78 5E-83 617.0 34.8 342 88-434 2-353 (372)
23 PRK14291 chaperone protein Dna 100.0 5.4E-78 1.2E-82 616.3 33.3 342 88-434 2-371 (382)
24 PRK14283 chaperone protein Dna 100.0 8.3E-77 1.8E-81 607.1 35.5 343 88-434 4-357 (378)
25 TIGR02349 DnaJ_bact chaperone 100.0 1.3E-75 2.8E-80 594.6 35.1 337 90-433 1-353 (354)
26 PRK14289 chaperone protein Dna 100.0 1.2E-75 2.5E-80 600.5 33.6 341 88-433 4-364 (386)
27 PRK14290 chaperone protein Dna 100.0 2.6E-75 5.7E-80 593.5 35.8 341 88-435 2-358 (365)
28 PRK14293 chaperone protein Dna 100.0 2.5E-75 5.5E-80 595.4 33.1 351 88-439 2-360 (374)
29 PRK14292 chaperone protein Dna 100.0 2.8E-73 6E-78 580.5 34.4 332 89-434 2-349 (371)
30 KOG0712 Molecular chaperone (D 100.0 2.9E-69 6.4E-74 529.0 24.1 325 88-431 3-337 (337)
31 PRK14299 chaperone protein Dna 100.0 1E-59 2.2E-64 465.3 28.1 262 87-433 2-286 (291)
32 PRK10266 curved DNA-binding pr 100.0 9.8E-58 2.1E-62 454.5 28.5 277 89-434 4-294 (306)
33 KOG0713 Molecular chaperone (D 100.0 2.4E-44 5.2E-49 348.9 10.3 309 86-421 13-328 (336)
34 KOG0715 Molecular chaperone (D 100.0 4.7E-42 1E-46 337.0 14.8 252 78-359 32-288 (288)
35 TIGR03835 termin_org_DnaJ term 100.0 4.2E-39 9E-44 338.7 28.3 171 202-430 658-831 (871)
36 KOG0714 Molecular chaperone (D 99.9 6.8E-22 1.5E-26 194.5 15.6 289 88-398 2-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 8.7E-22 1.9E-26 158.2 8.5 79 348-426 1-81 (81)
38 KOG0716 Molecular chaperone (D 99.8 3.8E-20 8.3E-25 175.0 6.1 75 87-161 29-103 (279)
39 KOG0721 Molecular chaperone (D 99.8 2.4E-19 5.3E-24 164.3 5.1 100 54-158 69-168 (230)
40 KOG0691 Molecular chaperone (D 99.7 6.8E-19 1.5E-23 172.0 5.2 73 88-160 4-76 (296)
41 KOG0718 Molecular chaperone (D 99.7 1.5E-18 3.3E-23 174.0 5.4 76 86-161 6-84 (546)
42 PTZ00341 Ring-infected erythro 99.7 2.1E-18 4.7E-23 186.6 6.7 74 86-160 570-643 (1136)
43 COG2214 CbpA DnaJ-class molecu 99.7 2.7E-17 5.8E-22 154.7 13.2 69 87-155 4-73 (237)
44 KOG0624 dsRNA-activated protei 99.7 7.2E-18 1.6E-22 164.2 7.1 76 86-162 391-469 (504)
45 PF00226 DnaJ: DnaJ domain; I 99.7 6.2E-18 1.3E-22 129.5 4.7 63 90-152 1-64 (64)
46 KOG0717 Molecular chaperone (D 99.7 1E-17 2.2E-22 168.1 5.5 72 85-156 4-76 (508)
47 COG0484 DnaJ DnaJ-class molecu 99.7 3.8E-17 8.3E-22 163.5 7.8 118 225-350 157-344 (371)
48 KOG0719 Molecular chaperone (D 99.7 2.3E-17 4.9E-22 152.6 4.9 71 86-156 11-83 (264)
49 smart00271 DnaJ DnaJ molecular 99.6 5.7E-16 1.2E-20 116.8 7.0 59 89-147 1-60 (60)
50 cd06257 DnaJ DnaJ domain or J- 99.6 1.5E-15 3.3E-20 112.3 6.9 55 90-144 1-55 (55)
51 PHA03102 Small T antigen; Revi 99.6 2.1E-15 4.6E-20 134.2 5.3 67 89-159 5-73 (153)
52 COG5407 SEC63 Preprotein trans 99.5 2E-15 4.4E-20 150.8 2.7 103 52-158 65-172 (610)
53 PRK05014 hscB co-chaperone Hsc 99.4 1.9E-13 4E-18 125.0 6.3 65 89-153 1-72 (171)
54 PRK14282 chaperone protein Dna 99.4 2.8E-13 6.1E-18 138.7 7.9 119 226-352 168-359 (369)
55 KOG0550 Molecular chaperone (D 99.4 1.3E-13 2.8E-18 137.6 4.5 68 86-153 370-438 (486)
56 KOG0722 Molecular chaperone (D 99.4 8.2E-14 1.8E-18 130.4 2.7 68 87-155 31-98 (329)
57 PRK01356 hscB co-chaperone Hsc 99.4 3.2E-13 7E-18 122.8 5.5 65 89-153 2-71 (166)
58 PRK00294 hscB co-chaperone Hsc 99.4 6.6E-13 1.4E-17 121.3 6.4 67 87-153 2-75 (173)
59 PRK03578 hscB co-chaperone Hsc 99.4 7.3E-13 1.6E-17 121.5 6.6 66 88-153 5-77 (176)
60 PRK14290 chaperone protein Dna 99.4 9E-13 1.9E-17 134.8 7.6 119 226-352 164-352 (365)
61 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 9.3E-13 2E-17 101.5 5.6 61 230-290 1-66 (66)
62 PRK14285 chaperone protein Dna 99.3 1.8E-12 3.9E-17 132.4 7.9 116 227-350 163-347 (365)
63 PRK14294 chaperone protein Dna 99.3 9.1E-13 2E-17 134.8 5.7 118 227-352 161-346 (366)
64 KOG0720 Molecular chaperone (D 99.3 7E-13 1.5E-17 133.7 4.5 66 88-154 234-299 (490)
65 PRK14298 chaperone protein Dna 99.3 1.2E-12 2.6E-17 134.2 6.0 56 297-352 292-347 (377)
66 PRK10767 chaperone protein Dna 99.3 1.2E-12 2.5E-17 134.3 5.7 56 297-352 289-344 (371)
67 PTZ00100 DnaJ chaperone protei 99.3 3.8E-12 8.3E-17 107.7 5.9 54 86-143 62-115 (116)
68 PRK14284 chaperone protein Dna 99.3 5.8E-12 1.2E-16 129.9 7.4 55 296-350 306-360 (391)
69 PRK14300 chaperone protein Dna 99.3 3.9E-12 8.4E-17 130.4 5.9 115 227-349 162-345 (372)
70 PRK14301 chaperone protein Dna 99.3 4E-12 8.8E-17 130.2 5.3 54 297-350 291-344 (373)
71 PRK09430 djlA Dna-J like membr 99.3 7E-12 1.5E-16 122.6 6.6 59 86-144 197-262 (267)
72 PRK14287 chaperone protein Dna 99.2 5.3E-12 1.1E-16 129.3 5.3 118 226-351 154-343 (371)
73 PRK14278 chaperone protein Dna 99.2 1.3E-11 2.8E-16 126.7 7.5 114 227-348 156-342 (378)
74 PRK14286 chaperone protein Dna 99.2 1.5E-11 3.2E-16 126.0 7.4 115 227-349 167-350 (372)
75 PRK14288 chaperone protein Dna 99.2 1.9E-11 4.1E-16 125.1 8.0 116 226-349 155-338 (369)
76 PRK14280 chaperone protein Dna 99.2 1.2E-11 2.6E-16 126.9 6.6 115 226-348 159-345 (376)
77 TIGR02349 DnaJ_bact chaperone 99.2 1.3E-11 2.8E-16 125.9 6.7 53 297-349 294-346 (354)
78 PRK14279 chaperone protein Dna 99.2 1.2E-11 2.5E-16 127.6 5.8 114 226-348 189-370 (392)
79 PRK14293 chaperone protein Dna 99.2 4.2E-11 9.1E-16 122.9 9.4 121 242-430 141-273 (374)
80 PRK14276 chaperone protein Dna 99.2 1.4E-11 3.1E-16 126.6 5.6 52 297-348 297-348 (380)
81 PRK14281 chaperone protein Dna 99.2 1.8E-11 4E-16 126.4 5.1 115 226-348 178-364 (397)
82 PRK14297 chaperone protein Dna 99.2 2.6E-11 5.6E-16 124.7 5.8 52 297-348 299-350 (380)
83 PHA02624 large T antigen; Prov 99.1 3.6E-11 7.7E-16 127.2 5.4 60 88-151 10-71 (647)
84 PRK14295 chaperone protein Dna 99.1 8E-11 1.7E-15 121.3 7.6 113 227-348 183-364 (389)
85 PRK14277 chaperone protein Dna 99.1 5E-11 1.1E-15 122.8 5.5 52 297-348 306-357 (386)
86 PRK14289 chaperone protein Dna 99.1 4.5E-11 9.8E-16 123.2 4.9 50 297-346 305-354 (386)
87 PRK14283 chaperone protein Dna 99.1 7E-11 1.5E-15 121.4 5.9 52 297-348 297-348 (378)
88 PRK14296 chaperone protein Dna 99.1 8E-11 1.7E-15 120.6 6.0 114 227-348 166-353 (372)
89 PRK14292 chaperone protein Dna 99.1 1.2E-10 2.5E-15 119.6 7.0 53 298-350 290-342 (371)
90 PRK14291 chaperone protein Dna 99.1 2.6E-10 5.7E-15 117.3 9.6 45 296-340 302-346 (382)
91 PTZ00037 DnaJ_C chaperone prot 99.1 3.4E-10 7.3E-15 117.4 8.0 115 226-346 165-356 (421)
92 KOG1150 Predicted molecular ch 98.9 1E-09 2.3E-14 99.7 4.9 67 87-153 51-118 (250)
93 PRK14299 chaperone protein Dna 98.9 3.9E-09 8.5E-14 104.8 8.9 74 342-422 125-199 (291)
94 PRK01773 hscB co-chaperone Hsc 98.9 2.3E-09 5E-14 98.0 6.0 65 89-153 2-73 (173)
95 TIGR00714 hscB Fe-S protein as 98.9 2.2E-09 4.9E-14 96.8 5.3 54 101-154 3-61 (157)
96 PLN03165 chaperone protein dna 98.7 2E-08 4.3E-13 84.6 6.3 60 226-294 40-100 (111)
97 PRK10266 curved DNA-binding pr 98.7 3.7E-08 7.9E-13 98.6 9.2 74 344-418 115-202 (306)
98 PF01556 CTDII: DnaJ C termina 98.6 2.5E-08 5.4E-13 80.0 3.5 50 295-344 26-76 (81)
99 COG5269 ZUO1 Ribosome-associat 98.6 2.9E-08 6.2E-13 94.2 3.9 68 88-155 42-114 (379)
100 KOG1789 Endocytosis protein RM 98.3 5.4E-07 1.2E-11 98.6 5.6 56 86-144 1278-1337(2235)
101 KOG0568 Molecular chaperone (D 98.1 2.5E-06 5.4E-11 79.5 4.7 55 89-144 47-102 (342)
102 TIGR02642 phage_xxxx uncharact 98.1 3.3E-06 7.1E-11 77.8 4.1 49 266-315 99-149 (186)
103 KOG0712 Molecular chaperone (D 98.0 1.3E-05 2.8E-10 80.1 7.6 105 229-340 145-324 (337)
104 KOG0723 Molecular chaperone (D 97.6 0.00011 2.3E-09 60.8 4.9 57 85-145 52-108 (112)
105 TIGR03835 termin_org_DnaJ term 97.5 0.00029 6.3E-09 76.6 8.9 70 89-159 2-71 (871)
106 COG1107 Archaea-specific RecJ- 97.5 5.4E-05 1.2E-09 79.3 3.2 64 229-293 4-81 (715)
107 KOG2813 Predicted molecular ch 97.0 0.00067 1.5E-08 66.4 4.0 42 246-301 236-277 (406)
108 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.9 0.001 2.2E-08 51.1 3.5 42 247-293 1-54 (66)
109 KOG3192 Mitochondrial J-type c 96.7 0.0015 3.2E-08 57.8 3.5 66 88-153 7-79 (168)
110 PLN03165 chaperone protein dna 96.6 0.0014 2.9E-08 55.5 2.3 41 229-280 54-100 (111)
111 COG1107 Archaea-specific RecJ- 96.5 0.0025 5.3E-08 67.3 4.0 47 227-280 18-82 (715)
112 COG1076 DjlA DnaJ-domain-conta 96.3 0.0028 6.1E-08 58.3 2.7 54 89-142 113-173 (174)
113 TIGR02642 phage_xxxx uncharact 95.5 0.0087 1.9E-07 55.4 2.5 13 267-279 116-128 (186)
114 COG1076 DjlA DnaJ-domain-conta 95.3 0.008 1.7E-07 55.2 1.5 63 91-153 3-72 (174)
115 KOG0431 Auxilin-like protein a 94.7 0.032 7E-07 58.8 4.2 44 98-141 397-447 (453)
116 KOG2813 Predicted molecular ch 94.4 0.02 4.4E-07 56.3 1.7 59 227-293 198-258 (406)
117 KOG0715 Molecular chaperone (D 91.4 0.089 1.9E-06 52.3 1.4 77 221-305 175-256 (288)
118 PF03656 Pam16: Pam16; InterP 89.5 0.75 1.6E-05 40.0 5.3 57 86-146 55-111 (127)
119 KOG2824 Glutaredoxin-related p 89.3 0.4 8.8E-06 46.7 3.8 51 228-287 230-280 (281)
120 TIGR00630 uvra excinuclease AB 84.8 0.53 1.1E-05 54.1 2.2 26 269-294 739-773 (924)
121 KOG2824 Glutaredoxin-related p 80.9 1.7 3.7E-05 42.5 3.6 38 245-293 230-275 (281)
122 smart00709 Zpr1 Duplicated dom 80.8 9.8 0.00021 34.5 8.3 26 364-393 75-100 (160)
123 TIGR00310 ZPR1_znf ZPR1 zinc f 80.7 14 0.0003 34.6 9.5 26 364-393 74-100 (192)
124 cd03031 GRX_GRX_like Glutaredo 79.9 2.1 4.5E-05 38.2 3.6 24 228-257 100-123 (147)
125 PF11833 DUF3353: Protein of u 79.6 2.7 5.9E-05 39.3 4.5 38 98-143 1-38 (194)
126 PF13446 RPT: A repeated domai 78.6 3.2 6.9E-05 31.1 3.8 27 89-115 5-31 (62)
127 PRK00349 uvrA excinuclease ABC 77.5 1.3 2.8E-05 51.1 1.9 14 281-294 762-775 (943)
128 TIGR00340 zpr1_rel ZPR1-relate 77.0 13 0.00029 33.7 8.0 26 364-393 72-98 (163)
129 KOG0724 Zuotin and related mol 76.4 2.4 5.3E-05 42.9 3.4 54 100-153 3-60 (335)
130 PRK14714 DNA polymerase II lar 75.9 2.7 5.8E-05 49.1 3.9 67 217-298 658-727 (1337)
131 PRK00635 excinuclease ABC subu 75.5 1.5 3.2E-05 53.7 1.7 24 405-431 1721-1745(1809)
132 cd03031 GRX_GRX_like Glutaredo 72.6 4.3 9.3E-05 36.2 3.6 38 244-292 99-145 (147)
133 COG0178 UvrA Excinuclease ATPa 71.6 2.8 6.1E-05 46.9 2.6 32 268-301 732-772 (935)
134 PRK04023 DNA polymerase II lar 71.4 3.4 7.5E-05 47.1 3.3 70 210-296 609-679 (1121)
135 PF14687 DUF4460: Domain of un 69.2 11 0.00024 32.1 5.2 46 99-144 4-53 (112)
136 TIGR00630 uvra excinuclease AB 67.0 2.8 6E-05 48.3 1.4 35 246-280 738-773 (924)
137 PF03367 zf-ZPR1: ZPR1 zinc-fi 63.0 23 0.00051 32.0 6.4 37 348-393 65-102 (161)
138 PRK00349 uvrA excinuclease ABC 61.2 5.6 0.00012 46.0 2.5 35 246-280 740-775 (943)
139 PRK12336 translation initiatio 60.3 40 0.00087 31.7 7.7 65 266-331 119-184 (201)
140 COG5552 Uncharacterized conser 58.5 44 0.00094 26.2 6.1 34 88-121 2-35 (88)
141 COG0178 UvrA Excinuclease ATPa 57.6 8.1 0.00018 43.5 2.8 35 246-280 732-767 (935)
142 cd02639 R3H_RRM R3H domain of 56.2 15 0.00033 27.6 3.3 24 410-433 17-40 (60)
143 PRK03564 formate dehydrogenase 54.3 13 0.00028 37.4 3.4 10 227-236 187-196 (309)
144 COG1198 PriA Primosomal protei 52.3 11 0.00024 42.2 2.9 50 227-289 435-484 (730)
145 PF03833 PolC_DP2: DNA polymer 52.2 4.7 0.0001 45.2 0.0 55 227-297 655-709 (900)
146 PF12991 DUF3875: Domain of un 51.5 17 0.00038 26.6 2.8 25 403-427 26-52 (54)
147 PRK05978 hypothetical protein; 47.3 9 0.00019 34.2 1.0 25 246-273 35-59 (148)
148 PF07191 zinc-ribbons_6: zinc- 46.8 16 0.00036 28.3 2.2 51 229-289 3-59 (70)
149 PF03589 Antiterm: Antitermina 46.0 8.2 0.00018 31.8 0.5 13 266-278 32-44 (95)
150 PF04246 RseC_MucC: Positive r 45.3 34 0.00075 29.7 4.4 21 295-315 41-61 (135)
151 PRK14559 putative protein seri 44.9 14 0.00029 41.1 2.1 49 228-289 2-50 (645)
152 PF09538 FYDLN_acid: Protein o 43.3 16 0.00034 30.9 1.8 28 224-251 6-33 (108)
153 PRK00635 excinuclease ABC subu 42.8 9.3 0.0002 47.0 0.5 29 268-296 1609-1646(1809)
154 PF07709 SRR: Seven Residue Re 42.4 14 0.00031 19.3 0.9 13 131-143 2-14 (14)
155 TIGR00310 ZPR1_znf ZPR1 zinc f 40.4 68 0.0015 29.9 5.7 20 297-316 80-100 (192)
156 cd06007 R3H_DEXH_helicase R3H 39.3 43 0.00093 25.0 3.4 24 410-433 16-39 (59)
157 PF10041 DUF2277: Uncharacteri 39.2 1.6E+02 0.0034 23.3 6.5 57 88-144 2-61 (78)
158 PRK14873 primosome assembly pr 39.0 23 0.00049 39.6 2.7 57 219-289 370-431 (665)
159 smart00709 Zpr1 Duplicated dom 39.0 65 0.0014 29.2 5.2 20 297-316 81-100 (160)
160 cd02641 R3H_Smubp-2_like R3H d 38.8 40 0.00087 25.2 3.2 23 412-434 19-41 (60)
161 COG2260 Predicted Zn-ribbon RN 38.5 19 0.00041 26.8 1.4 13 263-275 14-26 (59)
162 PF07092 DUF1356: Protein of u 38.1 17 0.00038 35.0 1.4 12 404-415 201-212 (238)
163 PRK13130 H/ACA RNA-protein com 37.8 21 0.00045 26.5 1.5 11 264-274 15-25 (56)
164 TIGR01562 FdhE formate dehydro 37.7 33 0.00071 34.4 3.4 17 106-122 100-116 (305)
165 PF12434 Malate_DH: Malate deh 36.0 40 0.00086 21.1 2.2 17 103-119 10-26 (28)
166 cd02640 R3H_NRF R3H domain of 35.9 51 0.0011 24.7 3.4 24 411-434 18-41 (60)
167 PF07092 DUF1356: Protein of u 35.8 18 0.0004 34.8 1.2 12 245-256 39-50 (238)
168 KOG1705 Uncharacterized conser 35.7 8.1 0.00018 31.3 -1.0 56 222-287 15-76 (110)
169 TIGR00595 priA primosomal prot 35.4 26 0.00055 37.8 2.4 51 227-290 213-263 (505)
170 COG1241 MCM2 Predicted ATPase 34.3 6.6E+02 0.014 28.3 13.0 16 418-433 258-273 (682)
171 TIGR02300 FYDLN_acid conserved 33.6 28 0.0006 30.2 1.8 29 224-252 6-34 (129)
172 smart00276 GLECT Galectin. Gal 33.2 58 0.0013 27.9 3.9 42 377-418 3-50 (128)
173 PRK00564 hypA hydrogenase nick 32.8 51 0.0011 28.1 3.3 40 216-255 59-99 (117)
174 PF08774 VRR_NUC: VRR-NUC doma 32.2 96 0.0021 25.2 4.8 27 407-433 62-89 (100)
175 COG3635 Predicted phosphoglyce 31.8 1.8E+02 0.0038 30.2 7.4 69 325-398 90-163 (408)
176 PF13453 zf-TFIIB: Transcripti 31.8 53 0.0012 22.3 2.7 6 247-252 2-7 (41)
177 PF14803 Nudix_N_2: Nudix N-te 31.6 35 0.00075 22.6 1.6 27 247-273 3-29 (34)
178 TIGR03655 anti_R_Lar restricti 31.5 57 0.0012 23.5 3.0 11 246-256 3-13 (53)
179 PRK05580 primosome assembly pr 29.6 36 0.00079 38.1 2.4 51 227-290 381-431 (679)
180 smart00440 ZnF_C2C2 C2C2 Zinc 29.4 76 0.0016 21.6 3.1 28 246-273 2-35 (40)
181 PF09862 DUF2089: Protein of u 29.4 42 0.00091 28.6 2.2 20 269-288 1-20 (113)
182 PRK12380 hydrogenase nickel in 28.9 56 0.0012 27.7 2.9 40 215-255 57-97 (113)
183 KOG2724 Nuclear pore complex c 28.8 57 0.0012 34.0 3.4 84 329-412 370-455 (487)
184 PF13719 zinc_ribbon_5: zinc-r 28.0 43 0.00093 22.4 1.7 6 267-272 26-31 (37)
185 TIGR00100 hypA hydrogenase nic 26.8 69 0.0015 27.2 3.2 38 216-254 58-96 (115)
186 COG2214 CbpA DnaJ-class molecu 26.3 2E+02 0.0043 25.9 6.5 71 348-420 150-221 (237)
187 PF07295 DUF1451: Protein of u 26.0 54 0.0012 29.2 2.4 41 236-280 104-144 (146)
188 PF01096 TFIIS_C: Transcriptio 25.7 93 0.002 21.0 3.0 28 246-273 2-35 (39)
189 PF08273 Prim_Zn_Ribbon: Zinc- 25.3 55 0.0012 22.5 1.8 7 268-274 28-34 (40)
190 PF08792 A2L_zn_ribbon: A2L zi 25.1 71 0.0015 20.9 2.2 10 246-255 5-14 (33)
191 PF14353 CpXC: CpXC protein 24.7 66 0.0014 27.5 2.7 12 266-277 38-49 (128)
192 PRK03681 hypA hydrogenase nick 24.4 79 0.0017 26.8 3.1 20 215-234 57-77 (114)
193 smart00350 MCM minichromosome 24.0 1E+02 0.0023 33.1 4.6 18 416-433 309-326 (509)
194 PF10365 DUF2436: Domain of un 23.8 1.3E+02 0.0027 26.7 4.1 36 371-409 96-139 (161)
195 COG3809 Uncharacterized protei 23.5 39 0.00085 26.7 0.9 7 268-274 23-29 (88)
196 COG5349 Uncharacterized protei 23.2 29 0.00062 29.9 0.1 24 246-272 23-46 (126)
197 KOG0315 G-protein beta subunit 22.6 53 0.0011 32.1 1.8 32 351-382 18-51 (311)
198 PF01155 HypA: Hydrogenase exp 22.3 45 0.00097 28.2 1.1 38 216-254 58-96 (113)
199 PF09723 Zn-ribbon_8: Zinc rib 22.1 55 0.0012 22.5 1.3 8 267-274 27-34 (42)
200 PRK12380 hydrogenase nickel in 21.7 1.1E+02 0.0023 25.9 3.4 24 266-289 70-95 (113)
201 PF15043 CNRIP1: CB1 cannabino 21.3 6.2E+02 0.013 23.0 9.9 20 394-413 89-108 (161)
202 PHA02681 ORF089 virion membran 21.3 74 0.0016 25.4 2.1 42 403-444 36-78 (92)
203 PF14354 Lar_restr_allev: Rest 21.2 1E+02 0.0022 22.5 2.8 11 245-256 4-14 (61)
204 PRK14051 negative regulator Gr 21.1 2.9E+02 0.0063 23.3 5.5 71 328-398 48-119 (123)
205 COG2879 Uncharacterized small 21.0 1.4E+02 0.0031 22.6 3.4 28 109-138 27-54 (65)
206 PF14205 Cys_rich_KTR: Cystein 20.9 1.4E+02 0.003 22.1 3.2 11 282-292 30-40 (55)
207 PF14706 Tnp_DNA_bind: Transpo 20.6 1.4E+02 0.003 22.3 3.3 42 103-146 14-57 (58)
208 PF07739 TipAS: TipAS antibiot 20.2 1.1E+02 0.0024 25.2 3.2 53 95-156 50-104 (118)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-95 Score=721.35 Aligned_cols=339 Identities=45% Similarity=0.800 Sum_probs=311.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN 165 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~ 165 (448)
++.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++|||||+||+||++||+||++++.+.+.+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999998733222
Q ss_pred CCCCCCCCCCCCcccccccccccchhhhcc----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163 166 GGPGHEGGFGNPFQDIFNMENIFNFRDIFR----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG 235 (448)
Q Consensus 166 ~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G 235 (448)
++ ++++|+.+|+ ||| +++|+ .+.+|.|+.+.|+|||+|++.|++++|.+++...|+.|+|
T Consensus 81 g~--g~~~fgg~~~------DIF--~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G 150 (371)
T COG0484 81 GF--GFGGFGGDFG------DIF--EDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG 150 (371)
T ss_pred CC--CcCCCCCCHH------HHH--HHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence 11 2233322232 344 44442 1347889999999999999999999999999999999999
Q ss_pred CCCCCCCccccCcCCCCCCceEEee--cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163 236 EGVPPGVKPEKCRRCKGSGMESIHS--GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 236 sG~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~ 313 (448)
+|+++++.+.+|++|+|+|++.... |.++++++|++|+|+|++++++|.+|+|.+.+.+.++++|+||+|+.+|++|+
T Consensus 151 sGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir 230 (371)
T COG0484 151 SGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIR 230 (371)
T ss_pred CCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEE
Confidence 9999999999999999999987666 99999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKN 393 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g 393 (448)
+.|+|++.+.|+++|||||+|.|++|+.|.|+|+|||++++|++.+|+||+++.||||||.+.|+||||||+|++++|+|
T Consensus 231 ~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~g 310 (371)
T COG0484 231 LSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRG 310 (371)
T ss_pred EecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 394 KGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 394 ~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
+|||...+..+|||||+++|++|++||.+|+++|++|++..
T Consensus 311 kG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 311 KGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 99998777778999999999999999999999999999865
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-83 Score=651.72 Aligned_cols=342 Identities=35% Similarity=0.630 Sum_probs=298.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||+||+.||+||++++.... ++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~--~~ 79 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS--GF 79 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC--Cc
Confidence 479999999999999999999999999999999998 578999999999999999999999999999988765311 00
Q ss_pred CCCCCCCCCCcccc----c-ccccccchhhhccc-------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163 168 PGHEGGFGNPFQDI----F-NMENIFNFRDIFRN-------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG 235 (448)
Q Consensus 168 ~~g~~gf~~~f~~~----f-~~~d~f~f~~~f~~-------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G 235 (448)
+++.++|.+.|+.+ | +++|+| +++|+. ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~f~d~f--~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G 157 (372)
T PRK14296 80 SSNFGDFEDLFSNMGSSGFSSFTNIF--SDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFG 157 (372)
T ss_pred CcCCCccccccccccccccccchhhh--hhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCC
Confidence 00111221112111 0 112444 555642 236789999999999999999999999999999999999
Q ss_pred CCCCCCCccccCcCCCCCCceEE--eecce--eeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCce
Q 013163 236 EGVPPGVKPEKCRRCKGSGMESI--HSGFM--SINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNET 311 (448)
Q Consensus 236 sG~~~~~~~~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~ 311 (448)
+|...+..+.+|+.|+|+|++.. +.|++ +++.+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||+++|++
T Consensus 158 ~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 237 (372)
T PRK14296 158 SGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQ 237 (372)
T ss_pred CccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCE
Confidence 99999888999999999999864 34665 566799999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCccEEEEEEEEeccccccc-CcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEE
Q 013163 312 LKVFRSGGADPDGNQPGDLYVTIKVREDPVFRRE-GANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVV 390 (448)
Q Consensus 312 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~-G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~ 390 (448)
|+|+|+|++.+.++.+|||+|+|+++||+.|+|+ |+|||++++|||.|||+|+++.|+||||++.|+||++++||++++
T Consensus 238 i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~r 317 (372)
T PRK14296 238 IKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELII 317 (372)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEE
Confidence 9999999998767889999999999999999995 899999999999999999999999999999999999999999999
Q ss_pred EcCCCccCC-CCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 391 LKNKGIKTR-NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 391 l~g~G~p~~-~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|+|+|||.. +++.+|||||+|+|+||++||++|+++|++|++..
T Consensus 318 i~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~ 362 (372)
T PRK14296 318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT 362 (372)
T ss_pred EcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999954 44568999999999999999999999999999764
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.2e-83 Score=650.10 Aligned_cols=335 Identities=35% Similarity=0.645 Sum_probs=299.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+||++++... + +
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~--~-~ 78 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA--G-A 78 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC--C-C
Confidence 479999999999999999999999999999999998788899999999999999999999999999998766421 1 1
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~ 238 (448)
+..+|.+.|++ +.++| +++|+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus 79 --~~~~~~~~f~~---~~~~F--~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~ 151 (369)
T PRK14288 79 --SQSDFSDFFED---LGSFF--EDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGA 151 (369)
T ss_pred --Cccccccchhh---HHHHH--HhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCccc
Confidence 11123222221 11233 333321 236789999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163 239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG 318 (448)
Q Consensus 239 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G 318 (448)
..+ ...+|+.|+|+|++..+.|+++++++|+.|+|+|+++..+|+.|.|.+++.+.++++|.||||+++|++|+|.|+|
T Consensus 152 ~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G 230 (369)
T PRK14288 152 KDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG 230 (369)
T ss_pred CCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence 876 6789999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCcc
Q 013163 319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIK 397 (448)
Q Consensus 319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p 397 (448)
++.+. +.+|||+|+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|+||++++||++++|+|+|||
T Consensus 231 ~~~~~-~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p 309 (369)
T PRK14288 231 NEYEK-GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVK 309 (369)
T ss_pred cCCCC-CCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCC
Confidence 99774 78999999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
..+...+|||||+|+|.||++||++|+++|++|++.+
T Consensus 310 ~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 346 (369)
T PRK14288 310 HPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHASF 346 (369)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 7665568999999999999999999999999999763
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-82 Score=645.02 Aligned_cols=341 Identities=40% Similarity=0.732 Sum_probs=304.1
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+||++++.... +++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~~~ 81 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA-GGF 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc-CCC
Confidence 4799999999999999999999999999999999988889999999999999999999999999999988765321 111
Q ss_pred CCCCCCCCCCccccc-ccccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeeeccCCCC
Q 013163 168 PGHEGGFGNPFQDIF-NMENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC 233 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C 233 (448)
+.++|+ +|.++| .++|+| +++|+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|
T Consensus 82 --~~~~~~-~~~~~~~~~~d~f--~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C 156 (372)
T PRK14286 82 --GQGAYT-DFSDIFGDFGDIF--GDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDC 156 (372)
T ss_pred --CCCCcc-cccccccchhhHH--HHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCC
Confidence 111111 121111 112344 444431 2367899999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163 234 GGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 234 ~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~ 313 (448)
+|+|...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|..|+|.+++.+.++++|+||||+++|++|+
T Consensus 157 ~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 236 (372)
T PRK14286 157 NGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLK 236 (372)
T ss_pred cCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEE
Confidence 99999988888999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLK 392 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~ 392 (448)
|+|+|++.+.+..+|||||+|+++||+.|+|+|+||++++.|+|.||++|+++.|+||||+ +.|+||+++++|++++|+
T Consensus 237 ~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~ 316 (372)
T PRK14286 237 VSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLK 316 (372)
T ss_pred ECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEEC
Confidence 9999999887778899999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|+|||..+.+.+|||||+|+|.||++||++|+++|++|++++
T Consensus 317 G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 317 GHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999997665678999999999999999999999999999875
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-82 Score=646.98 Aligned_cols=345 Identities=38% Similarity=0.695 Sum_probs=304.6
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC-
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN- 165 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~- 165 (448)
+.+|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||+||+.||+||+++......+
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 4589999999999999999999999999999999999888999999999999999999999999999997432111000
Q ss_pred C--CCCCCCCC-------CCCcccccc---------cccccchhhhccc---------ccCCCccccccccchhhhhccc
Q 013163 166 G--GPGHEGGF-------GNPFQDIFN---------MENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGC 218 (448)
Q Consensus 166 ~--~~~g~~gf-------~~~f~~~f~---------~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~ 218 (448)
+ ++++.++| +.+|+++|+ ++++| +++|+. ..+|.|+.+.|+|||+|+|+|+
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f--~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~ 164 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLF--GGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGV 164 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhh--hhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence 0 00000111 123444442 12344 555542 2367899999999999999999
Q ss_pred eeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEE
Q 013163 219 TKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSV 298 (448)
Q Consensus 219 ~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l 298 (448)
++++.+++.+.|+.|+|+|...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|..|.|.+++.+.+++
T Consensus 165 ~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~ 244 (392)
T PRK14279 165 TMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTI 244 (392)
T ss_pred EEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeee
Confidence 99999999999999999999998889999999999999888899999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEE
Q 013163 299 KLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLK 378 (448)
Q Consensus 299 ~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~ 378 (448)
+|.||||+++|++|+|+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+||||++.|+
T Consensus 245 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~ 324 (392)
T PRK14279 245 NVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVK 324 (392)
T ss_pred EEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEE
Confidence 99999999999999999999998877888999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 379 VRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 379 i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
||+++++|++++|+|+|||.. .+.+|||||+|+|.||++||++|+++|++|++.+
T Consensus 325 Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~ 379 (392)
T PRK14279 325 VPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE 379 (392)
T ss_pred ECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999964 3568999999999999999999999999999864
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-80 Score=632.07 Aligned_cols=343 Identities=38% Similarity=0.717 Sum_probs=305.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||++|+.||+||++++.... ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~--~~ 79 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG--GF 79 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC--Cc
Confidence 4699999999999999999999999999999999998889999999999999999999999999999988764311 10
Q ss_pred CCCCCCCCCCccccc-ccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIF-NMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG 237 (448)
++..++| ++|++.| .++|+| ++||+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 80 ~~~~~g~-~~~~~~~~~~~d~f--~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G 156 (365)
T PRK14285 80 EGFSGGF-SGFSDIFEDFGDIF--DSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK 156 (365)
T ss_pred cccCCCc-cccccccccHHHHH--HHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc
Confidence 0000122 1122111 112444 555542 23678999999999999999999999999999999999999
Q ss_pred CCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEecc
Q 013163 238 VPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 238 ~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
...+..+.+|+.|+|+|++...+|+++++.+|+.|+|.|+++..+|..|+|.+++.+.++++|.||||+++|++|+|+|+
T Consensus 157 ~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 236 (365)
T PRK14285 157 SEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGK 236 (365)
T ss_pred cCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeec
Confidence 99988899999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCc
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGI 396 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~ 396 (448)
|++.+.+..+|||+|+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|.||+++++|++++|+|+||
T Consensus 237 G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~ 316 (365)
T PRK14285 237 GSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGM 316 (365)
T ss_pred cccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCc
Confidence 999887778999999999999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
|..+...+|||||+|+|.+|+.|+++|+++|++|+++..
T Consensus 317 p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 317 PILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred cCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 976655689999999999999999999999999988764
No 7
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-80 Score=636.91 Aligned_cols=344 Identities=41% Similarity=0.743 Sum_probs=300.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999987753211111
Q ss_pred CCCCCCC-----C---CCcccccccccccchhhhccc--------ccCCCccccccccchhhhhccceeeeeeeeeccCC
Q 013163 168 PGHEGGF-----G---NPFQDIFNMENIFNFRDIFRN--------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCE 231 (448)
Q Consensus 168 ~~g~~gf-----~---~~f~~~f~~~d~f~f~~~f~~--------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~ 231 (448)
+.+.++| . ..|.++|. ++| +.+|+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~d~f~--~~F--~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~ 159 (386)
T PRK14277 84 GFGQGGFGGGGFDFDFGGFGDIFE--DIF--GDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD 159 (386)
T ss_pred CcCCCCccccCccccccchhHHHH--Hhh--cccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence 0000111 0 01111111 122 222321 23678999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163 232 ACGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307 (448)
Q Consensus 232 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~ 307 (448)
.|+|+|...+..+.+|+.|+|+|++... +|++++..+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||++
T Consensus 160 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 239 (386)
T PRK14277 160 VCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGID 239 (386)
T ss_pred CCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence 9999999988889999999999987643 377788899999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCc
Q 013163 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQ 387 (448)
Q Consensus 308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~ 387 (448)
+|++|+|+|+|++.+.+..+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|+
T Consensus 240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~ 319 (386)
T PRK14277 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319 (386)
T ss_pred CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence 99999999999987766788999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
+++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.+.
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~~ 367 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSG 367 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhcc
Confidence 999999999976656789999999999999999999999999997644
No 8
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-80 Score=632.52 Aligned_cols=337 Identities=38% Similarity=0.682 Sum_probs=298.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.....+++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 369999999999999999999999999999999997 4789999999999999999999999999999877643111000
Q ss_pred CCCCCCCCCCcccccccccccchhhhcc--------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFR--------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVP 239 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~--------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~ 239 (448)
+.++++|+ .|+ |+| ++||+ .+.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~-~~~------d~f--~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~ 153 (377)
T PRK14298 83 IFRGADFG-GFG------DIF--EMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAK 153 (377)
T ss_pred ccccCCcC-cch------hhh--HhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCccc
Confidence 00011121 122 233 34443 12468899999999999999999999999999999999999999
Q ss_pred CCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEe
Q 013163 240 PGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315 (448)
Q Consensus 240 ~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~ 315 (448)
.+..+.+|+.|+|+|++.... |+++++.+|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+|+
T Consensus 154 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~ 233 (377)
T PRK14298 154 PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS 233 (377)
T ss_pred CCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence 998899999999999986432 5678899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCC
Q 013163 316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKG 395 (448)
Q Consensus 316 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G 395 (448)
|+|++.+.++.+|||||+|+++||+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+|+|
T Consensus 234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G 313 (377)
T PRK14298 234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKG 313 (377)
T ss_pred cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCC
Confidence 99999877788999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 396 IKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 396 ~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
||..+++.+|||||+|+|++|+.||++|+++|+++++.+
T Consensus 314 ~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~ 352 (377)
T PRK14298 314 MPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFDELS 352 (377)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 997665578999999999999999999999999999764
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-80 Score=632.11 Aligned_cols=335 Identities=41% Similarity=0.738 Sum_probs=298.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.... + +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~-~-~ 79 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF-G-G 79 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc-C-C
Confidence 469999999999999999999999999999999998 478999999999999999999999999999988764311 1 1
Q ss_pred CCCCCCCCCCcccccccccccchhhhcc---------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFR---------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~---------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~ 238 (448)
++.++|+ .|+ |+| ++||+ ...+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 80 -~~~~~f~-~~~------d~f--~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~ 149 (371)
T PRK14287 80 -GGAGDFG-GFS------DIF--DMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGA 149 (371)
T ss_pred -CCCcccc-chH------HHH--HhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCccc
Confidence 1111221 122 222 33333 1236889999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163 239 PPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314 (448)
Q Consensus 239 ~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~ 314 (448)
..+..+.+|+.|+|+|++... +|+++++.+|+.|.|+|+++..+|..|.|.+++.+.++++|.||||+++|++|+|
T Consensus 150 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 229 (371)
T PRK14287 150 KPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRV 229 (371)
T ss_pred CCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEE
Confidence 988888999999999987643 3677888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK 394 (448)
Q Consensus 315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~ 394 (448)
+|+|++.+.++.+|||+|+|+++||+.|+|+|+||++++.|||.||++|+++.|+||||++.|+||+++++|++++|+|+
T Consensus 230 ~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~ 309 (371)
T PRK14287 230 SGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGK 309 (371)
T ss_pred ccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCC
Confidence 99999987767899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
|||..+.+.+|||||+|+|.+|++|+++|+++|++|++.+.
T Consensus 310 G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~ 350 (371)
T PRK14287 310 GVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSG 350 (371)
T ss_pred CccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 99976555689999999999999999999999999997643
No 10
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-80 Score=630.38 Aligned_cols=339 Identities=42% Similarity=0.747 Sum_probs=303.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||++++... + +
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~--~-~ 79 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN--G-G 79 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC--C-C
Confidence 579999999999999999999999999999999999888899999999999999999999999999998776421 1 1
Q ss_pred CCCCCCCCCCcccccccccccchhhhcc----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFR----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG 237 (448)
+++..++.++|+. +.++| +++|+ .+.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 80 ~~g~~~~~~~~~~---f~d~f--~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G 154 (373)
T PRK14301 80 FGGFSSAEDIFSH---FSDIF--GDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG 154 (373)
T ss_pred CCCcccccccccc---hHHHH--HHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence 1111111112211 12333 33333 123678999999999999999999999999999999999999
Q ss_pred CCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEecc
Q 013163 238 VPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 238 ~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
...+..+.+|+.|+|+|++..+.|+++++.+|+.|+|.|+++..+|+.|+|.+++.+.++++|+||||+++|++|+|+|+
T Consensus 155 ~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~ 234 (373)
T PRK14301 155 AAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGE 234 (373)
T ss_pred cCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEecc
Confidence 99888889999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCcc
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIK 397 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p 397 (448)
|++.+.++.+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+|+|||
T Consensus 235 G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p 314 (373)
T PRK14301 235 GEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLP 314 (373)
T ss_pred ccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCC
Confidence 99988778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
..+.+.+|||||+|+|.||+.||++|+++|++|++.+
T Consensus 315 ~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~ 351 (373)
T PRK14301 315 YLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALE 351 (373)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 8666678999999999999999999999999999774
No 11
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-80 Score=634.85 Aligned_cols=345 Identities=38% Similarity=0.660 Sum_probs=303.0
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCC
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGP 168 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~ 168 (448)
.|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||++|+.||+||++++.....+.++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 38999999999999999999999999999999999888999999999999999999999999999998775421110000
Q ss_pred CCCCCCCC---Ccccccc----c-ccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeee
Q 013163 169 GHEGGFGN---PFQDIFN----M-ENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTE 227 (448)
Q Consensus 169 ~g~~gf~~---~f~~~f~----~-~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~ 227 (448)
++.+++++ .|..+|+ . .|+| +++|+. ..+|.|+.+.|+|||+|+|+|+++++.+.+.
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f--~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~ 158 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFF--EGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY 158 (391)
T ss_pred CCcCcccchhhhccccccccccccccch--hhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence 01011100 1111111 1 2343 444431 1357899999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163 228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307 (448)
Q Consensus 228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~ 307 (448)
+.|+.|+|+|..++..+.+|+.|+|+|.+..+.|+++++.+|++|+|+|+++..+|+.|.|.+++.+.++++|+||||++
T Consensus 159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 238 (391)
T PRK14284 159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVD 238 (391)
T ss_pred ccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCC
Confidence 99999999999998889999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCC--CcEEEEeCCCCCC
Q 013163 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT--GDVVLKVRPGTQP 385 (448)
Q Consensus 308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tld--G~~~l~i~~g~~~ 385 (448)
+|++|+|+|+|++.+.++.+|||||+|+++||+.|+|+|+||+++++|||.||++|++++|+||| +.+.|+||+++++
T Consensus 239 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~ 318 (391)
T PRK14284 239 SGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQS 318 (391)
T ss_pred CCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999 5688999999999
Q ss_pred CcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 386 GQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 386 g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
|++++|+|+|||..+.+.+|||||+|+|.+|+.||++|+++|++|++.+.
T Consensus 319 g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~ 368 (391)
T PRK14284 319 GTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQFAATEK 368 (391)
T ss_pred CeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 99999999999976555789999999999999999999999999997643
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.6e-80 Score=630.34 Aligned_cols=335 Identities=36% Similarity=0.660 Sum_probs=295.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||+||++..... + .
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~--~-~ 77 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG--G-G 77 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc--C-C
Confidence 369999999999999999999999999999999998 58899999999999999999999999999997632111 0 0
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG 237 (448)
+ ++|+.+|++ ++|+| ++||+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 78 ~---~g~~~~f~~---~~d~f--~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G 149 (378)
T PRK14278 78 G---GGFGGGFGG---LGDVF--EAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG 149 (378)
T ss_pred C---CCCCcCcCc---hhHHH--HHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc
Confidence 0 111111211 11333 344431 23678999999999999999999999999999999999999
Q ss_pred CCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163 238 VPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 238 ~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~ 313 (448)
...+..+.+|+.|+|+|++... .|+++++++|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+
T Consensus 150 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 229 (378)
T PRK14278 150 TAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIR 229 (378)
T ss_pred CCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEE
Confidence 9998889999999999997643 366778899999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecC-CCcEEEEeCCCCCCCcEEEEc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTL-TGDVVLKVRPGTQPGQKVVLK 392 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tl-dG~~~l~i~~g~~~g~~~~l~ 392 (448)
|+|+|++.+.++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+|| +|.+.|+||+++++|++++|+
T Consensus 230 ~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~ 309 (378)
T PRK14278 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLR 309 (378)
T ss_pred EccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEEC
Confidence 9999999887788899999999999999999999999999999999999999999999 556899999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|+|||..+.+.+|||||+|+|.||++||++|+++|++|+++.
T Consensus 310 g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~ 351 (378)
T PRK14278 310 GRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRELKALR 351 (378)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence 999997655678999999999999999999999999999753
No 13
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-80 Score=627.80 Aligned_cols=340 Identities=42% Similarity=0.740 Sum_probs=304.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~--- 79 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF--- 79 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC---
Confidence 47999999999999999999999999999999999988899999999999999999999999999999987753111
Q ss_pred CCCCCCCCCCcccccccccccchhhhcc-----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFR-----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE 236 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~-----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs 236 (448)
++.++|.+.|++ ++|+| +++|+ ...+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus 80 -~~~~~~~~~~~~---~~d~f--~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~ 153 (366)
T PRK14294 80 -SGFSGFDDIFSS---FGDIF--EDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS 153 (366)
T ss_pred -CCcCccccchhh---hhhhH--HHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence 111122211211 12333 34443 12357899999999999999999999999999999999999
Q ss_pred CCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163 237 GVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR 316 (448)
Q Consensus 237 G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g 316 (448)
|...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|+.|.|.+++.+.++++|.||||+++|++|+|+|
T Consensus 154 G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 233 (366)
T PRK14294 154 GCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRG 233 (366)
T ss_pred cccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEcc
Confidence 99988888999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCc
Q 013163 317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGI 396 (448)
Q Consensus 317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~ 396 (448)
+|++.+.++.+|||+|+|+++||+.|+|+|+||++++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+||
T Consensus 234 ~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~ 313 (366)
T PRK14294 234 EGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGI 313 (366)
T ss_pred CccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCC
Confidence 99998777889999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhcC
Q 013163 397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERG 436 (448)
Q Consensus 397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~~ 436 (448)
|..+.+.+|||||+|+|.+|++|+++|+++|++|++.+++
T Consensus 314 p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~~ 353 (366)
T PRK14294 314 PSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLESE 353 (366)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 9765557899999999999999999999999999987553
No 14
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.7e-80 Score=629.69 Aligned_cols=342 Identities=38% Similarity=0.721 Sum_probs=302.2
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccc----ccccccccc
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQ----VGHEAFVHQ 162 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~----~g~~~~~~~ 162 (448)
+..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+ ||++++...
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 4689999999999999999999999999999999998878899999999999999999999999999 998776521
Q ss_pred ccCCCCCCCCCCCCCcccccc--------------cccccchhhhccc------ccCCCccccccccchhhhhccceeee
Q 013163 163 ETNGGPGHEGGFGNPFQDIFN--------------MENIFNFRDIFRN------RMSGQDVKVAVELSFMEAVQGCTKTV 222 (448)
Q Consensus 163 ~~~~~~~g~~gf~~~f~~~f~--------------~~d~f~f~~~f~~------~~~g~di~~~l~vsl~e~~~G~~k~i 222 (448)
..+ + ++++|.....++|+ +.++| +++|+. ..+|.|+.+.|+|||+|+|+|+++++
T Consensus 87 ~~~-~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f--~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i 161 (389)
T PRK14295 87 PGG-G--GGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVF--GGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPL 161 (389)
T ss_pred CCC-C--CCCCCCcccccccccccccccccccccchhhhh--cccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEE
Confidence 100 0 00111100011111 11233 444431 23678999999999999999999999
Q ss_pred eeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEe
Q 013163 223 TFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDI 302 (448)
Q Consensus 223 ~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~I 302 (448)
.+++.+.|+.|+|+|...+..+.+|+.|+|+|++....|.++++.+|+.|+|+|++++.+|..|.|.+++.+.++++|.|
T Consensus 162 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~I 241 (389)
T PRK14295 162 RLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRI 241 (389)
T ss_pred EeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEe
Confidence 99999999999999999988899999999999998777888999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCC
Q 013163 303 MPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRP 381 (448)
Q Consensus 303 p~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~ 381 (448)
|||+++|++|+|+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+|||| .+.|+||+
T Consensus 242 p~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~ 321 (389)
T PRK14295 242 PAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPP 321 (389)
T ss_pred CCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECC
Confidence 99999999999999999987778899999999999999999999999999999999999999999999999 58899999
Q ss_pred CCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 382 GTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 382 g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
++++|++++|+|+|||.. .+.+|||||+|+|.||++||++|+++|++|++..
T Consensus 322 g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~ 373 (389)
T PRK14295 322 GTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEAFREAT 373 (389)
T ss_pred ccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999964 4468999999999999999999999999999864
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.9e-80 Score=628.22 Aligned_cols=339 Identities=44% Similarity=0.752 Sum_probs=299.2
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 81 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGG 81 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCC
Confidence 369999999999999999999999999999999998 4789999999999999999999999999999887653211100
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~ 238 (448)
. ++.+|+.. |+++|+| ++||+. ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 82 ~-~~~~~~~~----~~~~d~f--~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 154 (376)
T PRK14280 82 F-GGGDFGGG----FGFEDIF--SSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGA 154 (376)
T ss_pred C-CCCCcccc----ccchhhH--HHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCccc
Confidence 0 00111100 1112444 455531 236789999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163 239 PPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314 (448)
Q Consensus 239 ~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~ 314 (448)
..+..+.+|+.|+|+|++... .|+++++.+|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+|
T Consensus 155 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l 234 (376)
T PRK14280 155 KPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRV 234 (376)
T ss_pred CCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEE
Confidence 988888999999999987643 3667888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK 394 (448)
Q Consensus 315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~ 394 (448)
+|+|++.+.++.+|||+|+|+++||+.|+|+|+|||+++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+
T Consensus 235 ~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~ 314 (376)
T PRK14280 235 SGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGK 314 (376)
T ss_pred cccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCC
Confidence 99999988778899999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|||......+|||||+|+|.||++||++|+++|++|++.+
T Consensus 315 G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~ 354 (376)
T PRK14280 315 GVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREFAELS 354 (376)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 9997655578999999999999999999999999999754
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-79 Score=627.98 Aligned_cols=343 Identities=38% Similarity=0.723 Sum_probs=301.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.... +.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~-~~~ 81 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG-GFG 81 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC-CCC
Confidence 3699999999999999999999999999999999998889999999999999999999999999999988765311 100
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc-----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN-----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE 236 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~-----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs 236 (448)
+++.++|. |+++.++.|+| ++||+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus 82 ~~~~~~~~--~~~~~~~~d~f--~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 157 (380)
T PRK14297 82 SGGFGGFD--FSDMGGFGDIF--DSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGT 157 (380)
T ss_pred CCCCCCcC--cccccchhHHH--HHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccc
Confidence 00111111 11100112333 444431 2367899999999999999999999999999999999999
Q ss_pred CCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163 237 GVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL 312 (448)
Q Consensus 237 G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i 312 (448)
|..++....+|+.|+|+|++... +|+++++.+|+.|+|+|+++..+|..|+|.+++.+.++++|.||||+++|++|
T Consensus 158 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I 237 (380)
T PRK14297 158 GAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237 (380)
T ss_pred cccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEE
Confidence 99998889999999999987643 36778899999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK 392 (448)
Q Consensus 313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~ 392 (448)
+|.|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus 238 ~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~ 317 (380)
T PRK14297 238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLK 317 (380)
T ss_pred EEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEc
Confidence 99999998877778999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
|+|||..+++.+|||||+|+|.||++||++|+++|++|++.+.
T Consensus 318 g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~ 360 (380)
T PRK14297 318 GKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASG 360 (380)
T ss_pred CCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9999976656789999999999999999999999999998754
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-79 Score=629.87 Aligned_cols=345 Identities=38% Similarity=0.711 Sum_probs=297.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 46999999999999999999999999999999999887889999999999999999999999999999987653211001
Q ss_pred CCC--CC--CCCCCc---cccccccc------ccchhhhccc---------ccCCCccccccccchhhhhccceeeeeee
Q 013163 168 PGH--EG--GFGNPF---QDIFNMEN------IFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQ 225 (448)
Q Consensus 168 ~~g--~~--gf~~~f---~~~f~~~d------~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~ 225 (448)
+++ ++ .+.+.| ++||+... .|.|..+|+. ..+|.|+.+.|+|||+|+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 000 01 111222 23332110 0111111211 12578999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEE
Q 013163 226 TELPCEACGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~ 301 (448)
+.+.|+.|+|+|...+ .+.+|+.|+|+|++... .|+++++.+|++|+|.|++++.+|+.|+|.+++.+.++++|.
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999887 57899999999987643 366778899999999999999999999999999999999999
Q ss_pred ecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCC
Q 013163 302 IMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRP 381 (448)
Q Consensus 302 Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~ 381 (448)
||||+++|++|+|+|+|++.+.++.+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~ 320 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA 320 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence 99999999999999999998877889999999999999999999999999999999999999999999999998999999
Q ss_pred CCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 382 GTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 382 g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
++++|++++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.
T Consensus 321 g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 321 GTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred ccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999765567899999999999999999999999999975
No 18
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-79 Score=625.40 Aligned_cols=338 Identities=46% Similarity=0.821 Sum_probs=303.1
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999877889999999999999999999999999999887653211101
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc--------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN--------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVP 239 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~--------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~ 239 (448)
.++.++|++.|++ +| +.+|+. ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~f~~------~f--~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 154 (371)
T PRK10767 83 FGGGGGFGDIFGD------IF--GDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAK 154 (371)
T ss_pred CCCccccccchhh------hh--hhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccC
Confidence 0011122222333 33 344431 2468899999999999999999999999999999999999999
Q ss_pred CCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCC
Q 013163 240 PGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGG 319 (448)
Q Consensus 240 ~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~ 319 (448)
.+....+|+.|+|+|++....|+++++.+|+.|+|+|+++..+|+.|.|.+++.+.+.++|.||||+++|++|+|+|+|+
T Consensus 155 ~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 234 (371)
T PRK10767 155 PGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGE 234 (371)
T ss_pred CCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCcc
Confidence 88888999999999999877899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCC
Q 013163 320 ADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTR 399 (448)
Q Consensus 320 ~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~ 399 (448)
+.+.+..+|||+|+|+++||+.|+|+|+||++++.|||.|||+|+++.|+||||.+.|.||+++++|++++|+|+|||..
T Consensus 235 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~ 314 (371)
T PRK10767 235 AGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSV 314 (371)
T ss_pred CCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCC
Confidence 97766789999999999999999999999999999999999999999999999998999999999999999999999976
Q ss_pred CCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 400 ~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
+++.+|||||+|+|.||++|+++|+++|+++++.
T Consensus 315 ~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 315 RSGARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6567899999999999999999999999999974
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-79 Score=625.89 Aligned_cols=340 Identities=40% Similarity=0.697 Sum_probs=299.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.....+ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~-~ 80 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGG-G 80 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCC-C
Confidence 479999999999999999999999999999999998 47899999999999999999999999999999876531111 0
Q ss_pred CCCCCCCC--CCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163 168 PGHEGGFG--NPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE 236 (448)
Q Consensus 168 ~~g~~gf~--~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs 236 (448)
.++.++|+ ..|.+ +.|+| ++||+. ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+
T Consensus 81 ~~~~~~~~~~~~~~~---~~d~f--~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~ 155 (380)
T PRK14276 81 AGGFGGFDGSGGFGG---FEDIF--SSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGS 155 (380)
T ss_pred CCCCCCccccccccc---hhhHH--HHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCc
Confidence 00111111 01111 12344 455541 2367899999999999999999999999999999999999
Q ss_pred CCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163 237 GVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL 312 (448)
Q Consensus 237 G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i 312 (448)
|...+..+.+|+.|+|+|++... .|+++.+.+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||+++|++|
T Consensus 156 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (380)
T PRK14276 156 GAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQI 235 (380)
T ss_pred ccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEE
Confidence 99988888999999999998643 36778889999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK 392 (448)
Q Consensus 313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~ 392 (448)
+|+|+|++.+.+..+|||+|+|+|+||+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+
T Consensus 236 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~ 315 (380)
T PRK14276 236 RLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLR 315 (380)
T ss_pred EEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEEC
Confidence 99999999877678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.+
T Consensus 316 g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~ 357 (380)
T PRK14276 316 GKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKAS 357 (380)
T ss_pred CCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999997655568999999999999999999999999999754
No 20
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.4e-79 Score=619.61 Aligned_cols=341 Identities=38% Similarity=0.704 Sum_probs=300.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG 166 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~ 166 (448)
.+|||+||||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|++||++|+||++|+.||+||.+++.....+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 47999999999999999999999999999999999864 67999999999999999999999999999987654211110
Q ss_pred CCCCCCC-CCCCccc---ccccccccchhhhccc----------ccCCCccccccccchhhhhccceeeeeeeeeccCCC
Q 013163 167 GPGHEGG-FGNPFQD---IFNMENIFNFRDIFRN----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEA 232 (448)
Q Consensus 167 ~~~g~~g-f~~~f~~---~f~~~d~f~f~~~f~~----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~ 232 (448)
+ ++++ |.+.|.+ +|+ +|+| +++|+. ..+|+|+.+.|+|||+|+|+|+++++.+++.+.|+.
T Consensus 83 ~--~~g~~~~~~~~~~~~~~~-~d~f--~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~ 157 (369)
T PRK14282 83 E--SGGGFFEDIFKDFENIFN-RDIF--DIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPH 157 (369)
T ss_pred C--CCCccccccccccccccc-chhh--hHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCC
Confidence 0 1112 2222222 221 2444 555542 236789999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCC
Q 013163 233 CGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN 308 (448)
Q Consensus 233 C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~ 308 (448)
|+|+|...+..+.+|+.|+|+|++... +|+++++.+|+.|+|+|++++.+|..|+|.+++.+.++++|.||||+++
T Consensus 158 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 237 (369)
T PRK14282 158 CGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVED 237 (369)
T ss_pred CCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCC
Confidence 999999988888999999999988643 4778889999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCc
Q 013163 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQ 387 (448)
Q Consensus 309 G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~ 387 (448)
|++|+|+|+|++.+.++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+|+||+ +.|+||+|+++|+
T Consensus 238 G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~ 317 (369)
T PRK14282 238 GTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPET 317 (369)
T ss_pred CCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCC
Confidence 999999999999887788999999999999999999999999999999999999999999999996 7899999999999
Q ss_pred EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
+++|+|+|||..+.+.+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 318 ~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~ 363 (369)
T PRK14282 318 VFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKELAKK 363 (369)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999754456899999999999999999999999999875
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1e-78 Score=624.75 Aligned_cols=331 Identities=31% Similarity=0.610 Sum_probs=287.8
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Q 013163 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQET 164 (448)
Q Consensus 85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~ 164 (448)
.+..+|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||++|+||++|+.||+||++++...
T Consensus 24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~-- 97 (421)
T PTZ00037 24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG-- 97 (421)
T ss_pred cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC--
Confidence 3456899999999999999999999999999999999862 4799999999999999999999999998766421
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCcc
Q 013163 165 NGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKP 244 (448)
Q Consensus 165 ~~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~ 244 (448)
+ ++..+.+.|+.||+.+ . .-....+|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+ .+
T Consensus 98 --~--~~~d~~d~f~~~Fggg-----~-~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~ 166 (421)
T PTZ00037 98 --E--QPADASDLFDLIFGGG-----R-KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AF 166 (421)
T ss_pred --C--CCcchhhhHHHhhccc-----c-ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CC
Confidence 0 1111212233332210 0 0011346889999999999999999999999999999999999998655 57
Q ss_pred ccCcCCCCCCceEE--eecce--eeeEecccCCceeEEEe--eeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163 245 EKCRRCKGSGMESI--HSGFM--SINQTCRQCGGTGHIIT--NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG 318 (448)
Q Consensus 245 ~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G 318 (448)
.+|+.|+|+|+++. +.|++ +++.+|+.|+|+|+++. .+|+.|+|.+++.+.++++|+||||+++|++|+|+|+|
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~G 246 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEA 246 (421)
T ss_pred ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEeccc
Confidence 89999999998653 44654 67789999999999986 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCC
Q 013163 319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKG 395 (448)
Q Consensus 319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G 395 (448)
++.++ +.||||+|+|+++||+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|+|||| ++||++++|+|+|
T Consensus 247 d~~~~-~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geG 325 (421)
T PTZ00037 247 DEKPN-EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEG 325 (421)
T ss_pred CCCCC-CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCC
Confidence 99775 78999999999999999999999999999999999999999999999997 78999998 9999999999999
Q ss_pred ccCCCC-CCCCcEEEEEEEECC--CCCCHHHHHHHHHHHHH
Q 013163 396 IKTRNS-FSFGDQYVHFNVSIP--TNLTQRQRELIEEFAKE 433 (448)
Q Consensus 396 ~p~~~~-~~~GDL~V~~~V~~P--~~ls~~q~~ll~~~~~~ 433 (448)
||..+. +.+|||||+|+|.|| ++||++|+++|++|++.
T Consensus 326 mP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 326 MPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred cccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 997543 578999999999999 99999999999999864
No 22
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-78 Score=617.00 Aligned_cols=342 Identities=40% Similarity=0.791 Sum_probs=300.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+|+.+|+.||+||++++......++
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~ 80 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG 80 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC
Confidence 369999999999999999999999999999999997 5778999999999999999999999999999887653210011
Q ss_pred CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~ 238 (448)
.++.++|+..|+++| .++| +++|+. ..+|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus 81 ~g~~~~~~~~~~~~f--~~~f--~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~ 156 (372)
T PRK14300 81 GGNHGGFHPDINDIF--GDFF--SDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGS 156 (372)
T ss_pred CCCCCccccchhhhH--HHHH--HhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCccc
Confidence 111112211122222 1222 222321 136789999999999999999999999999999999999999
Q ss_pred CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163 239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG 318 (448)
Q Consensus 239 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G 318 (448)
..+..+.+|+.|+|+|++....|+++++.+|+.|+|.|+++..+|+.|+|.+++.+.+.++|.||||+++|++|+++|+|
T Consensus 157 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G 236 (372)
T PRK14300 157 EKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEG 236 (372)
T ss_pred CCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccc
Confidence 98888999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCcc
Q 013163 319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIK 397 (448)
Q Consensus 319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p 397 (448)
++.+.++.+|||+|+|+++||+.|+|+|+||++++.|+|.+|++|+++.|+|||| .+.|+||+|+++|++++|+|+|||
T Consensus 237 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p 316 (372)
T PRK14300 237 EAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMS 316 (372)
T ss_pred cCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCC
Confidence 9987778899999999999999999999999999999999999999999999998 578999999999999999999999
Q ss_pred CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
..+...+|||||+|+|.||++||++|+++|++|+++.
T Consensus 317 ~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~~ 353 (372)
T PRK14300 317 KMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFKKES 353 (372)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 7655578999999999999999999999999999754
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-78 Score=616.28 Aligned_cols=342 Identities=41% Similarity=0.762 Sum_probs=299.1
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
.+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++.......+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 4799999999999999999999999999999999985 789999999999999999999999999999987653211100
Q ss_pred -CCCCC-----CCCCCcccccccccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeeec
Q 013163 168 -PGHEG-----GFGNPFQDIFNMENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTEL 228 (448)
Q Consensus 168 -~~g~~-----gf~~~f~~~f~~~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~ 228 (448)
..+.+ .+++.|.+||+ +|+|+++|+. ..+|.|+.+.|+|||+|+|+|+++++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~---~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~ 157 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFD---IFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYV 157 (382)
T ss_pred cccccccccCCCHHHHHHHHHH---hccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeec
Confidence 00001 11112333321 1222222321 22678999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCC
Q 013163 229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN 308 (448)
Q Consensus 229 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~ 308 (448)
.|+.|+|+|...+....+|+.|+|+|++....|+++++.+|+.|+|+|. ++.+|..|+|.+++.+.++++|+||||+++
T Consensus 158 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 236 (382)
T PRK14291 158 PCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN 236 (382)
T ss_pred cCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence 9999999999998889999999999998877788899999999999995 789999999999999999999999999999
Q ss_pred CceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCc
Q 013163 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQ 387 (448)
Q Consensus 309 G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~ 387 (448)
|++|+|+|+|+..+.++.+|||||+|+++||+.|+|+|+||++++.|||.||++|+++.|+|+||+ +.|+||+|+++|+
T Consensus 237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~ 316 (382)
T PRK14291 237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD 316 (382)
T ss_pred CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence 999999999999887789999999999999999999999999999999999999999999999996 7899999999999
Q ss_pred EEEEcCCCccCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHHHHHh
Q 013163 388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPT--NLT------QRQRELIEEFAKEE 434 (448)
Q Consensus 388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~--~ls------~~q~~ll~~~~~~~ 434 (448)
+++|+|+|||..+...+|||||+|+|.||+ .|| ++|+++|++|++..
T Consensus 317 ~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 317 KIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 999999999976655789999999999998 599 99999999998665
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.3e-77 Score=607.11 Aligned_cols=343 Identities=39% Similarity=0.676 Sum_probs=298.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++......+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 5799999999999999999999999999999999984 789999999999999999999999999999876542110000
Q ss_pred CCCCCCCCCCccccc-ccccccchhhh-ccc-----ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCC
Q 013163 168 PGHEGGFGNPFQDIF-NMENIFNFRDI-FRN-----RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPP 240 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~-f~~-----~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~ 240 (448)
. ...++.+.|..++ +++++| ..+ |++ +.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus 83 ~-~~~~~~~~~~~~~~~~~~~f--~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~ 159 (378)
T PRK14283 83 F-NNINFEDIFQGFGFGIGNIF--DMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEP 159 (378)
T ss_pred c-cccCccccccccccchhhhc--cccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCC
Confidence 0 0011111122221 112333 222 321 34688999999999999999999999999999999999999998
Q ss_pred CCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163 241 GVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR 316 (448)
Q Consensus 241 ~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g 316 (448)
+....+|+.|+|+|++... .|+++.+.+|++|+|.|+.+..+|..|+|.+++.+.+.++|.||||+++|++|+|+|
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g 239 (378)
T PRK14283 160 GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSG 239 (378)
T ss_pred CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEec
Confidence 8889999999999998643 367788899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCc
Q 013163 317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGI 396 (448)
Q Consensus 317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~ 396 (448)
+|++.+.++.+|||+|+|+|++|+.|+|+|+||++++.|||.+|++|+++.|+||||.+.|.||+++++|++++|+|+||
T Consensus 240 ~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~ 319 (378)
T PRK14283 240 EGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGM 319 (378)
T ss_pred cccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCC
Confidence 99998777789999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|....+.+|||||+|+|+||++||++|+++|++|++..
T Consensus 320 p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~ 357 (378)
T PRK14283 320 PSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREFASIS 357 (378)
T ss_pred CCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence 97655578999999999999999999999999998653
No 25
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.3e-75 Score=594.64 Aligned_cols=337 Identities=45% Similarity=0.788 Sum_probs=296.5
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCCC
Q 013163 90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPG 169 (448)
Q Consensus 90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~ 169 (448)
|||++|||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||++|+|+.+|+.||+||++++.....+ .++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~~ 78 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGG-GGG 78 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcC-CCC
Confidence 7999999999999999999999999999999998 57899999999999999999999999999998876532110 000
Q ss_pred CCCCCC-CCcccccccccccchhhhccc-----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163 170 HEGGFG-NPFQDIFNMENIFNFRDIFRN-----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237 (448)
Q Consensus 170 g~~gf~-~~f~~~f~~~d~f~f~~~f~~-----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG 237 (448)
+..++. +.|++ +.++| +.+|+. ..++.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~---~~~~f--~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G 153 (354)
T TIGR02349 79 GFNGFDIGFFGD---FGDIF--GDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTG 153 (354)
T ss_pred CcCCccccCcCc---hhhhH--HHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCC
Confidence 001110 01211 12333 444431 23678999999999999999999999999999999999999
Q ss_pred CCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163 238 VPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 238 ~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~ 313 (448)
...+....+|+.|+|+|.+... +|+++++++|+.|+|+|++++.+|+.|.|.+++.+.+.++|.||||+++|++|+
T Consensus 154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 233 (354)
T TIGR02349 154 AKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLR 233 (354)
T ss_pred CCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEE
Confidence 9988888999999999998744 356788899999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKN 393 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g 393 (448)
|+|+|++.+.+..+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||.+.|.||+++++|++++|+|
T Consensus 234 ~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g 313 (354)
T TIGR02349 234 VSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKG 313 (354)
T ss_pred EecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECC
Confidence 99999987777789999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 394 KGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 394 ~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
+|||..+.+.+|||||+|+|.||++|+++|+++|+++++.
T Consensus 314 ~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 314 KGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999766557899999999999999999999999999864
No 26
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-75 Score=600.53 Aligned_cols=341 Identities=37% Similarity=0.648 Sum_probs=299.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999877642111111
Q ss_pred CCC-CCCCCCCcccccccccccchhhhc---------------ccccCCCccccccccchhhhhccceeeeeeeeeccCC
Q 013163 168 PGH-EGGFGNPFQDIFNMENIFNFRDIF---------------RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCE 231 (448)
Q Consensus 168 ~~g-~~gf~~~f~~~f~~~d~f~f~~~f---------------~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~ 231 (448)
.++ +.++.+.|.+ | +++| +.+| ....+|.|+.+.|.|||+|+|+|+++++.+++.+.|+
T Consensus 84 ~~~~~~~~~~~f~~-f--~~~f--g~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 158 (386)
T PRK14289 84 FSGEGMSMEDIFSM-F--GDIF--GGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCS 158 (386)
T ss_pred CCCCCcChhhhhHH-h--hhhh--cccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccC
Confidence 100 0011122211 1 1111 1111 0123678999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163 232 ACGGEGVPPGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307 (448)
Q Consensus 232 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~ 307 (448)
.|+|+|........+|+.|+|+|.+.... |+++++.+|+.|+|+|+++..+|..|.|.+++.+.++++|.||||++
T Consensus 159 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 159 HCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 99999999888889999999999987543 77888999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCc
Q 013163 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQ 387 (448)
Q Consensus 308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~ 387 (448)
+|++|+|+|+|++.+.+..+|||+|+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.|.||+++++|+
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 318 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGK 318 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCc
Confidence 99999999999998777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
+++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.
T Consensus 319 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 319 VLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred EEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 9999999999765557899999999999999999999999999986
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-75 Score=593.52 Aligned_cols=341 Identities=37% Similarity=0.650 Sum_probs=291.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG 166 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~ 166 (448)
..|||+||||+++||.+|||+|||+||++||||+|++++ +|+++|++|++||++|+||.+|+.||+||+.++...+ ++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~-~~ 80 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGG-SN 80 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCC-CC
Confidence 369999999999999999999999999999999998764 7999999999999999999999999999987764210 00
Q ss_pred CC-CCCCCC---CCCcccccccccccchhhhccc-----c--cCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163 167 GP-GHEGGF---GNPFQDIFNMENIFNFRDIFRN-----R--MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG 235 (448)
Q Consensus 167 ~~-~g~~gf---~~~f~~~f~~~d~f~f~~~f~~-----~--~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G 235 (448)
++ ++..+| .+.|++||+.. |. .+.|+. . .++.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~~--~~-~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 81 FNWDNFTHFSDINDIFNQIFGGN--FG-SDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccccchhHHHHHHhcCc--cc-cccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 00 000011 12233333210 00 000100 1 13779999999999999999999999999999999999
Q ss_pred CCCCCCCccccCcCCCCCCceEEe--ecce--eeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCce
Q 013163 236 EGVPPGVKPEKCRRCKGSGMESIH--SGFM--SINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNET 311 (448)
Q Consensus 236 sG~~~~~~~~~C~~C~G~G~~~~~--~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~ 311 (448)
+|...+ ...+|+.|+|+|++... +|++ +++.+|+.|+|.|++++.+|+.|+|.+++.+.++++|.||||+.+|++
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 236 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLR 236 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcE
Confidence 998876 57899999999987644 4665 346799999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEE
Q 013163 312 LKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVL 391 (448)
Q Consensus 312 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l 391 (448)
|+|+|+|+. .++.+|||+|+|++++|+.|+|+|+||++++.|||.||++|+++.|+|++|.+.|+||+++++|++++|
T Consensus 237 i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri 314 (365)
T PRK14290 237 LRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKI 314 (365)
T ss_pred EEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEE
Confidence 999999985 367899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163 392 KNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435 (448)
Q Consensus 392 ~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~ 435 (448)
+|+|||..+...+|||||+|+|.+|+.|+++|+++|++|++.++
T Consensus 315 ~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 315 KGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 99999976555689999999999999999999999999987654
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-75 Score=595.41 Aligned_cols=351 Identities=38% Similarity=0.666 Sum_probs=299.4
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~ 80 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPD 80 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCC
Confidence 469999999999999999999999999999999997 4779999999999999999999999999999876642100000
Q ss_pred CCCCCCCCCCcccccccccccc---hhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCcc
Q 013163 168 PGHEGGFGNPFQDIFNMENIFN---FRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKP 244 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~---f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~ 244 (448)
.++.++|.+.|++||+...-.+ +........++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+...
T Consensus 81 ~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 160 (374)
T PRK14293 81 MGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160 (374)
T ss_pred cccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence 0000112223333332100000 0000001235779999999999999999999999999999999999999988888
Q ss_pred ccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCC
Q 013163 245 EKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA 320 (448)
Q Consensus 245 ~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~ 320 (448)
.+|+.|+|+|++... +|+++++.+|..|.|.|++++.+|+.|.|.+++.+.+.++|.||||+++|++|+|+|+|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~ 240 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDA 240 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccC
Confidence 999999999987643 3678888999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCC
Q 013163 321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRN 400 (448)
Q Consensus 321 ~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~ 400 (448)
.+.+..+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+|+|||..+
T Consensus 241 ~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 241 GLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCC
Confidence 77667789999999999999999999999999999999999999999999999988999999999999999999999754
Q ss_pred C-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Q 013163 401 S-FSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYD 439 (448)
Q Consensus 401 ~-~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~~~~~ 439 (448)
. ..+|||||+|+|+||++|+++|+++|++|++.+++...
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~~~~~ 360 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKIKGERQG 360 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhccccCC
Confidence 4 36899999999999999999999999999988655544
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-73 Score=580.46 Aligned_cols=332 Identities=36% Similarity=0.676 Sum_probs=290.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCC
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGP 168 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~ 168 (448)
.|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||+++.... +++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~--~~~- 77 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM--PGG- 77 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc--cCC-
Confidence 48999999999999999999999999999999997 57899999999999999999999999999998753210 000
Q ss_pred CCCCCCCCCcccccccccccchhhhcc-----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163 169 GHEGGFGNPFQDIFNMENIFNFRDIFR-----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237 (448)
Q Consensus 169 ~g~~gf~~~f~~~f~~~d~f~f~~~f~-----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG 237 (448)
++.++++ | +..++| +.+|+ ...+|.|+.+.+.|||+|+|+|+++++.+++...|+.|+|+|
T Consensus 78 ~~~~~~~--~----d~~d~f--~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G 149 (371)
T PRK14292 78 DPFGGMG--F----DPMDIF--EQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR 149 (371)
T ss_pred cccCccC--C----ChHHHH--HHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc
Confidence 0001111 1 111222 22322 124678999999999999999999999999999999999999
Q ss_pred CCCCC-ccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163 238 VPPGV-KPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL 312 (448)
Q Consensus 238 ~~~~~-~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i 312 (448)
..... ...+|+.|+|+|++..+ .|+++++.+|..|+|.|+.+..+|+.|.|.+++.+.+.++|.||||+++|++|
T Consensus 150 ~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 229 (371)
T PRK14292 150 TEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRI 229 (371)
T ss_pred cCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEE
Confidence 87664 37899999999987643 37788889999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK 392 (448)
Q Consensus 313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~ 392 (448)
+|+|+|++.+.+. |||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+||||++.|+||+|+++|++++|+
T Consensus 230 ~~~G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~ 307 (371)
T PRK14292 230 RVAGMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLR 307 (371)
T ss_pred EEecCcCCCCCCC--CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEEC
Confidence 9999999976543 99999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|+|||..+...+|||||+|+|.||+.||++|+++|++|++.+
T Consensus 308 g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~ 349 (371)
T PRK14292 308 GQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAYARAV 349 (371)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999997655568999999999999999999999999999754
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-69 Score=529.02 Aligned_cols=325 Identities=35% Similarity=0.659 Sum_probs=288.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG 167 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~ 167 (448)
...||+||||+++||++|||+|||+||++||||||++ |.++|++|++|||||+||++|+.||+||++++...+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~--- 76 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG--- 76 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC---
Confidence 4579999999999999999999999999999999975 8899999999999999999999999999998843211
Q ss_pred CCCCCCCCCCcccccccccccchhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccC
Q 013163 168 PGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKC 247 (448)
Q Consensus 168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C 247 (448)
++|++. |++||+++ .....+..+|.|+.+.++|+|+|+|.|.++++.++++.+|+.|+|+|...+..+ +|
T Consensus 77 ---~~g~~~-f~~~F~~g-----~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C 146 (337)
T KOG0712|consen 77 ---GGGFGG-FSQFFGFG-----GNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KC 146 (337)
T ss_pred ---CCCCcc-HHHhccCC-----CcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CC
Confidence 123322 77777521 111223445999999999999999999999999999999999999999887654 89
Q ss_pred cCCCCCCceE--Eeecc-e--eeeEecccCCceeEEE--eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCC
Q 013163 248 RRCKGSGMES--IHSGF-M--SINQTCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA 320 (448)
Q Consensus 248 ~~C~G~G~~~--~~~g~-~--~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~ 320 (448)
+.|.|+|..+ .++|+ + +++..|..|+|+|.++ ++.|+.|.|.+++.+.+.++|.|++|+.++++|++.|++++
T Consensus 147 ~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geade 226 (337)
T KOG0712|consen 147 TTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADE 226 (337)
T ss_pred CCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeee
Confidence 9999999975 45666 2 6788999999999984 68999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCCcc
Q 013163 321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIK 397 (448)
Q Consensus 321 ~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G~p 397 (448)
.+. ..+||+++.|..++|+.|.|+|+||++...|++.||++|+.+.+.||||+ +.+.++|| ++||++++|+|+|||
T Consensus 227 a~g-~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp 305 (337)
T KOG0712|consen 227 APG-TKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMP 305 (337)
T ss_pred cCC-CcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcc
Confidence 875 55999999999999999999999999999999999999999999999996 68899998 899999999999999
Q ss_pred CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 013163 398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFA 431 (448)
Q Consensus 398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~ 431 (448)
..+.+ +|||||+|.|+||+ +++++...|+.++
T Consensus 306 ~~~~~-~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 306 IFRNP-KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred cccCC-CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 86655 99999999999999 9999999998864
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-59 Score=465.32 Aligned_cols=262 Identities=37% Similarity=0.640 Sum_probs=221.3
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG 166 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~ 166 (448)
+..|||+||||+++||.+|||+|||+||++||||+|+ +++++++|++|++||++|+||++|+.||+||+++......+.
T Consensus 2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~ 80 (291)
T PRK14299 2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP 80 (291)
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence 3579999999999999999999999999999999997 578999999999999999999999999999987543210010
Q ss_pred --CCCCCCCCC----CCcccccccccccchhhhcc-----------------cccCCCccccccccchhhhhccceeeee
Q 013163 167 --GPGHEGGFG----NPFQDIFNMENIFNFRDIFR-----------------NRMSGQDVKVAVELSFMEAVQGCTKTVT 223 (448)
Q Consensus 167 --~~~g~~gf~----~~f~~~f~~~d~f~f~~~f~-----------------~~~~g~di~~~l~vsl~e~~~G~~k~i~ 223 (448)
+.++.++|. ++|+ ++| +++|+ ...+|.|+.+.+.|||+|++.|+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~------d~f--~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~ 152 (291)
T PRK14299 81 PPGPPGGGDFSGFNVGDFS------DFF--QQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVE 152 (291)
T ss_pred CCCCCCCCCccccCcCCHH------HHH--HHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEe
Confidence 000111111 1122 222 22222 1235789999999999999999998775
Q ss_pred eeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEec
Q 013163 224 FQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIM 303 (448)
Q Consensus 224 ~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip 303 (448)
+. .++++|+||
T Consensus 153 l~---------------------------------------------------------------------g~~~~V~Ip 163 (291)
T PRK14299 153 VA---------------------------------------------------------------------GERLSVRIP 163 (291)
T ss_pred eC---------------------------------------------------------------------CEEEEEecC
Confidence 31 256889999
Q ss_pred CCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCC
Q 013163 304 PGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGT 383 (448)
Q Consensus 304 ~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~ 383 (448)
||+++|++|+++|+|++. |||+|+|++++|+.|+|+|+||+++++||+.||++|+++.|+||||.+.|+||+++
T Consensus 164 ~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~ 237 (291)
T PRK14299 164 PGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRT 237 (291)
T ss_pred CCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCc
Confidence 999999999999999853 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163 384 QPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 384 ~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
++|++++|+|+|||.. .+.+|||||+|+|.+|++|+++|+++|++|++.
T Consensus 238 ~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~ 286 (291)
T PRK14299 238 QAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQLAEL 286 (291)
T ss_pred CCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999999999999963 356899999999999999999999999999865
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=9.8e-58 Score=454.48 Aligned_cols=277 Identities=30% Similarity=0.600 Sum_probs=230.2
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccc----cccccc
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA----FVHQET 164 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~----~~~~~~ 164 (448)
.|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||... +...
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~-- 80 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ-- 80 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccc--
Confidence 69999999999999999999999999999999987 4689999999999999999999999999998542 2111
Q ss_pred CCCCCCCCCCC-CCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCC
Q 013163 165 NGGPGHEGGFG-NPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACG 234 (448)
Q Consensus 165 ~~~~~g~~gf~-~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~ 234 (448)
. +.+++..++ .+|. ++| +.+|+. ..+|.|+.+.+.|+|+|+++|+.+++.+++.+ |.
T Consensus 81 ~-~~~~~~~~~~~~~~------~~f--~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~ 147 (306)
T PRK10266 81 F-QHGDGQSFNAEDFD------DIF--SSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN 147 (306)
T ss_pred c-ccCCCCCCCCCCHH------HHH--HHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc
Confidence 0 000000110 1222 222 333331 23578999999999999999999999886532 21
Q ss_pred CCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163 235 GEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314 (448)
Q Consensus 235 GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~ 314 (448)
|.|... ....++++|.||||+++|++|++
T Consensus 148 -----------------g~G~~~----------------------------------~~~~~~~~V~Ip~G~~~G~~i~~ 176 (306)
T PRK10266 148 -----------------AFGMIE----------------------------------QEIPKTLNVKIPAGVGNGQRIRL 176 (306)
T ss_pred -----------------CCCeEE----------------------------------EeeeEEEEEEECCCCcCCcEEEE
Confidence 222110 01236899999999999999999
Q ss_pred eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK 394 (448)
Q Consensus 315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~ 394 (448)
+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++||+.+|++|+++.|+|+||.+.|+||+++++|++++|+|+
T Consensus 177 ~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~ 256 (306)
T PRK10266 177 KGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGK 256 (306)
T ss_pred ecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCC
Confidence 99999987778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163 395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
|||..+ .+|||||+|+|.+|++||++|+++|++|++..
T Consensus 257 G~p~~~--~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~ 294 (306)
T PRK10266 257 GLVSKK--QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ 294 (306)
T ss_pred CCCCCC--CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 999643 58999999999999999999999999999863
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=348.88 Aligned_cols=309 Identities=30% Similarity=0.492 Sum_probs=241.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN 165 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~ 165 (448)
...+|||+||||+++|+..|||+||||||++||||+|++||.|.++|++|+.|||||+||++|+.||+||++++......
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999998864311
Q ss_pred CCCCCCCCCCCCccccccccccc-chhhhc-c-cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCC
Q 013163 166 GGPGHEGGFGNPFQDIFNMENIF-NFRDIF-R-NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGV 242 (448)
Q Consensus 166 ~~~~g~~gf~~~f~~~f~~~d~f-~f~~~f-~-~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~ 242 (448)
+.++.+| .++|+.+|+ ++. .++... . ....|.++...++.++++.|.+........+.+.|.. . ++
T Consensus 93 -~~~g~~~-~~~f~~~f~--dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~------g~ 161 (336)
T KOG0713|consen 93 -GEGGGGG-NDIFSAFFG--DFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-P------GT 161 (336)
T ss_pred -cccCCcc-cchHHHhhc--ccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-C------cc
Confidence 1111122 256666554 111 001111 1 1356788899999999999998876666555554431 1 11
Q ss_pred ccccCcCCCCCCceEEeecceeeeEecccCCceeEEE-eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCC
Q 013163 243 KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII-TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGAD 321 (448)
Q Consensus 243 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~ 321 (448)
....|+. . ..++..|.|....+ ...|..|.+.+...+....++.+..|...|....+..+|.+.
T Consensus 162 ~~~~~~~-----~----------~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (336)
T KOG0713|consen 162 RKCNCRL-----E----------MFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPH 226 (336)
T ss_pred cccCChh-----h----------heeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcc
Confidence 1112211 1 11222333333333 246777777888899999999999999999999999999887
Q ss_pred CCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccC-C
Q 013163 322 PDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKT-R 399 (448)
Q Consensus 322 ~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~-~ 399 (448)
.. +.+||+++.+...+|+.|.|.++++++.+.|++.+++.|+...+.++|+. +.++-..++.|+..++.+++|||. .
T Consensus 227 ~~-~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~ 305 (336)
T KOG0713|consen 227 ID-GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLK 305 (336)
T ss_pred ee-cccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhh
Confidence 65 78999999999999999999999999999999999999999999999996 456667778999999999999995 4
Q ss_pred CCCCCCcEEEEEEEECCCC-CCH
Q 013163 400 NSFSFGDQYVHFNVSIPTN-LTQ 421 (448)
Q Consensus 400 ~~~~~GDL~V~~~V~~P~~-ls~ 421 (448)
.....|++|++|.+.+|.+ +|+
T Consensus 306 ~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 306 NRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred ccchhcceeEEecccCcccccch
Confidence 4457899999999999954 665
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=336.97 Aligned_cols=252 Identities=43% Similarity=0.759 Sum_probs=214.6
Q ss_pred ccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccc
Q 013163 78 RSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHE 157 (448)
Q Consensus 78 ~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~ 157 (448)
+.++.+..+...|||+||||+++|+..|||+||++||++||||.|.+ ++|+++|++|.+|||+|+|+++|+.||.+|..
T Consensus 32 r~~~~s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 32 RKFHASRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred ceeeecccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 44444544555699999999999999999999999999999999986 59999999999999999999999999999976
Q ss_pred cccccccCCCCCCCCCCCCCcccccccccccchhhhccc----ccCCCccccccccchhhhhccceeeeeeeeeccCCCC
Q 013163 158 AFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRN----RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC 233 (448)
Q Consensus 158 ~~~~~~~~~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~~----~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C 233 (448)
+. + +.+| +|++ +| ..+|+. ...+.++.+.+.++|+++..|+.+.+.+.....|.+|
T Consensus 111 ~~-----~----~~~g--~~~~-------~~--~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~ 170 (288)
T KOG0715|consen 111 QH-----G----EFGG--NPFD-------VF--LEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETC 170 (288)
T ss_pred cc-----c----cccC--Cccc-------hH--HHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccc
Confidence 51 1 0111 2321 11 222222 2345678888999999999999999999999999999
Q ss_pred CCCCCCCCCccccCcCCCCCCceE-EeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163 234 GGEGVPPGVKPEKCRRCKGSGMES-IHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL 312 (448)
Q Consensus 234 ~GsG~~~~~~~~~C~~C~G~G~~~-~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i 312 (448)
.|.|..++.....|..|.|.|... ..+.++... +|..|.|.|.+....|..|.|.+.+...+.+.|.+|+|+.++.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l 249 (288)
T KOG0715|consen 171 FGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTL 249 (288)
T ss_pred cCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEE
Confidence 999999999999999999999654 345555555 999999999999988999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHH
Q 013163 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQ 359 (448)
Q Consensus 313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~e 359 (448)
++.+.|.. ||+|+|.|.+++.|+|+|.|+++++.|+++|
T Consensus 250 ~~~~~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 250 RFAGHGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred EEecCCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 99987753 9999999999999999999999999999764
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=4.2e-39 Score=338.68 Aligned_cols=171 Identities=17% Similarity=0.213 Sum_probs=140.9
Q ss_pred ccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee
Q 013163 202 DVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN 281 (448)
Q Consensus 202 di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~ 281 (448)
++...++|+|+++|+|++|++++.|.+.| |.
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~--------------------------------------------- 688 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHTVD----GN--------------------------------------------- 688 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEeecc----CC---------------------------------------------
Confidence 34566778888888888888888776543 11
Q ss_pred eccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHh
Q 013163 282 WCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAI 361 (448)
Q Consensus 282 ~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl 361 (448)
|...+++.++++|+||||+++|++|+|+|+|+..++ + +|||+|+|++++|+.|+|+|+|||+++.|+|.+||
T Consensus 689 ------G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EAL 760 (871)
T TIGR03835 689 ------TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAY 760 (871)
T ss_pred ------CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHh
Confidence 112344568999999999999999999999998654 3 49999999999999999999999999999999999
Q ss_pred cCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEE-CCCC--CCHHHHHHHHHH
Q 013163 362 LGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS-IPTN--LTQRQRELIEEF 430 (448)
Q Consensus 362 lG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~-~P~~--ls~~q~~ll~~~ 430 (448)
+|+++.|+||||++.|+||+++++|++++|+|+|||..+ +.+|||||+|+|. +++. -|--|.+.+-+|
T Consensus 761 LGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~-~~RGDLyV~f~V~~~~k~~~~~n~qv~~f~~l 831 (871)
T TIGR03835 761 NGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK-YDKGSLIVHLYYSSVMKKNDRTNVQVQQFNKL 831 (871)
T ss_pred cCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC-CCCCCEEEEEEEeeccccCCcCChHHHHHHHH
Confidence 999999999999989999999999999999999999543 4689999999994 5543 233444443333
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.8e-22 Score=194.45 Aligned_cols=289 Identities=27% Similarity=0.412 Sum_probs=171.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG 166 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~ 166 (448)
..|||++|+|.++|+.+||++|||++|++||||+|+.. ..|+++|++|++||++|+|+.+|..||+||++++.+.....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 47999999999999999999999999999999998864 25666899999999999999999999999986655411100
Q ss_pred CCCCCC----CCC---CCcccccccccccchh-hhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163 167 GPGHEG----GFG---NPFQDIFNMENIFNFR-DIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238 (448)
Q Consensus 167 ~~~g~~----gf~---~~f~~~f~~~d~f~f~-~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~ 238 (448)
+....+ .+. +.|..+|+..+.+... ..+. ..+........-++..+.....-. ......+..+.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 157 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYR--DKNAAPGEEAFKSEGKAFQSLYGP--KRKQYDSSGSDRSAR 157 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCC--ccccccCccccccccccccccCCC--ccccccccccccccc
Confidence 000000 000 1123333311111000 0000 000000000000000000000000 000000000000000
Q ss_pred --CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163 239 --PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR 316 (448)
Q Consensus 239 --~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g 316 (448)
.+......| .....+..|.-..++.........-. .........+.+++++..|+.+....
T Consensus 158 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (306)
T KOG0714|consen 158 QSPPVEHPLRV----------------SLEDLYKGESKKMKISRQSFTSNGRE-GSSRSRYLSISIKPGWKEGTKITFPE 220 (306)
T ss_pred CCCCccCCcce----------------eHHHhccccceeeecccccccCCccc-ccCccceeEEeccCCcccccceeccc
Confidence 000000000 00111112222222111111100001 23456888999999999999999999
Q ss_pred cCCCCCCCCCCccEEEEEEEEecccccccCcceEEE--EEeCHHHHhcCCeeeeecCCCcE-EEEeC-CCCCCCcEEEEc
Q 013163 317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD--SVLSVTQAILGGTIQVPTLTGDV-VLKVR-PGTQPGQKVVLK 392 (448)
Q Consensus 317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~--~~Isl~eAllG~~~~v~tldG~~-~l~i~-~g~~~g~~~~l~ 392 (448)
+|...+. ..|-++++.+..++|+.|.+.+++|... ..|++.+|++|....++++++.. .+.+. .-..++...+++
T Consensus 221 ~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (306)
T KOG0714|consen 221 EGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIP 299 (306)
T ss_pred cccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeec
Confidence 8887665 6788999999999999999999999999 99999999999999999999863 44444 567889999999
Q ss_pred CCCccC
Q 013163 393 NKGIKT 398 (448)
Q Consensus 393 g~G~p~ 398 (448)
++|||.
T Consensus 300 ~~~~~~ 305 (306)
T KOG0714|consen 300 GEGLPC 305 (306)
T ss_pred CCCCCC
Confidence 999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=8.7e-22 Score=158.24 Aligned_cols=79 Identities=41% Similarity=0.721 Sum_probs=68.9
Q ss_pred ceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCccCCCCC-CCCcEEEEEEEECCCCCCHHHHH
Q 013163 348 NIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSIPTNLTQRQRE 425 (448)
Q Consensus 348 DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p~~~~~-~~GDL~V~~~V~~P~~ls~~q~~ 425 (448)
|||++++||++||++|++++|+|+|| .+.|++|+++++|++++|+|+|||..... .+|||||+|+|.||++||++|++
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 79999999999999999999999999 68999999999999999999999976554 89999999999999999999998
Q ss_pred H
Q 013163 426 L 426 (448)
Q Consensus 426 l 426 (448)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.8e-20 Score=174.99 Aligned_cols=75 Identities=52% Similarity=0.783 Sum_probs=71.0
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH 161 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~ 161 (448)
...|+|+|||++++|+.++||||||+||++||||+++++|++.++|++||+||+||+||.+|..||+||..++.-
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999876643
No 39
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.4e-19 Score=164.29 Aligned_cols=100 Identities=28% Similarity=0.489 Sum_probs=87.5
Q ss_pred ccccccccchhHHHHHHhhhcCCcccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 013163 54 SLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQ 133 (448)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~ 133 (448)
+.++......|....++...+..++ ......|+|+||||+++||++|||+|||+|+++|||||++.-.+.++.|.
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~-----~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~ 143 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSR-----RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFE 143 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh-----HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHH
Confidence 5566778899999999987765544 23567899999999999999999999999999999999985466788999
Q ss_pred HHHHHHhhhcccccccccccccccc
Q 013163 134 EVSKAYEVLKDDEKRSVYDQVGHEA 158 (448)
Q Consensus 134 ~i~~Ay~~L~d~~~R~~yd~~g~~~ 158 (448)
.|++||+.|+|+..|++|.+||+..
T Consensus 144 ~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 144 AIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHHHHHHHhcchhhHHHHHHhCCCC
Confidence 9999999999999999999999754
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-19 Score=172.04 Aligned_cols=73 Identities=51% Similarity=0.834 Sum_probs=69.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV 160 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 160 (448)
..|||++|||+.+|+.+||++|||+.|++||||+||+||+|.++|+.+.+||+||+|+..|+.||++|.....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~ 76 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS 76 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence 5699999999999999999999999999999999999999999999999999999999999999999976543
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.5e-18 Score=174.03 Aligned_cols=76 Identities=42% Similarity=0.735 Sum_probs=69.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD---PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH 161 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~ 161 (448)
..+.|||.+|+|+++||.+|||+|||++++.|||||+.+. ..|++.|+.|.+|||||+||.+|++||.||+.+++.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 4457999999999999999999999999999999998732 349999999999999999999999999999988863
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=2.1e-18 Score=186.61 Aligned_cols=74 Identities=31% Similarity=0.631 Sum_probs=68.7
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV 160 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~ 160 (448)
....+||+||||+++||..|||+|||+||++||||+|+++ .|.++|++|++||+||+||.+|+.||+||..++.
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 3468999999999999999999999999999999999864 7888999999999999999999999999987654
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.7e-17 Score=154.67 Aligned_cols=69 Identities=55% Similarity=0.930 Sum_probs=65.5
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHhhhccccccccccccc
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEKRSVYDQVG 155 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~yd~~g 155 (448)
+..+||+||||+++|+..|||+|||++|++||||+++.++. ++++|+.|++||++|+|+.+|+.||+++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45799999999999999999999999999999999998885 9999999999999999999999999973
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.72 E-value=7.2e-18 Score=164.23 Aligned_cols=76 Identities=47% Similarity=0.770 Sum_probs=68.1
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP---EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQ 162 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~ 162 (448)
...+|||+||||.++|+..||.+|||++|.+||||...+.+ .|+++|..|..|-|||+||++|+.||. |++.+...
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~E 469 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDPE 469 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCChh
Confidence 34689999999999999999999999999999999887533 399999999999999999999999998 77776654
No 45
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.71 E-value=6.2e-18 Score=129.49 Aligned_cols=63 Identities=49% Similarity=0.847 Sum_probs=59.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHhhhcccccccccc
Q 013163 90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEKRSVYD 152 (448)
Q Consensus 90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~yd 152 (448)
|||+||||+++++.++||++|+++++++|||++..+. ++++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999988765 68999999999999999999999997
No 46
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1e-17 Score=168.14 Aligned_cols=72 Identities=46% Similarity=0.729 Sum_probs=66.4
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH 156 (448)
Q Consensus 85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 156 (448)
+.+.+.||+||||.++|++.|||++||+||++||||+||+. .+|.++|+.|+.||+|||||..|+-||..-+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 35668999999999999999999999999999999999865 5799999999999999999999999998654
No 47
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-17 Score=163.54 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=89.1
Q ss_pred eeeccCCCCCCCCCCCC-------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCCCe
Q 013163 225 QTELPCEACGGEGVPPG-------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKGAR 290 (448)
Q Consensus 225 ~~~~~C~~C~GsG~~~~-------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G~g 290 (448)
+...+|++|+|+|.... ...++|+.|+|+|.++ ..+|++|+|.|.+.+ .+-....|..
T Consensus 157 t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i--------~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ 228 (371)
T COG0484 157 TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII--------KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR 228 (371)
T ss_pred CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC--------CCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence 35689999999997532 2367899999999987 789999999997643 1111222221
Q ss_pred EEecce--------------------------------------------------------EEEEEecCCCCCCceeEE
Q 013163 291 VVKGSK--------------------------------------------------------SVKLDIMPGVDNNETLKV 314 (448)
Q Consensus 291 ~v~~~k--------------------------------------------------------~l~V~Ip~G~~~G~~i~~ 314 (448)
.+...+ .++|+||||+++|++++|
T Consensus 229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl 308 (371)
T COG0484 229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL 308 (371)
T ss_pred EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence 111111 478889999999999999
Q ss_pred eccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350 (448)
Q Consensus 315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 350 (448)
+|+|.+...+...|||||+|+|..+..+..+...|+
T Consensus 309 ~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL 344 (371)
T COG0484 309 RGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELL 344 (371)
T ss_pred cCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHH
Confidence 999999887777899999999999988766665543
No 48
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.3e-17 Score=152.60 Aligned_cols=71 Identities=54% Similarity=0.917 Sum_probs=65.7
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNK--DDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH 156 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~ 156 (448)
.+.+|+|+||||.++|+..+|++||++||++||||+++ ++.+|.++|++++.||+||+|+++|+.||+.|.
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 45569999999999999999999999999999999994 456799999999999999999999999999885
No 49
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.63 E-value=5.7e-16 Score=116.82 Aligned_cols=59 Identities=58% Similarity=0.909 Sum_probs=54.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHhhhccccc
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD-DPEAEKKFQEVSKAYEVLKDDEK 147 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~~ 147 (448)
.|||++|||+++++.++||+||+++++++|||++.+ .+.+++.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999986 57789999999999999999853
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=1.5e-15 Score=112.35 Aligned_cols=55 Identities=65% Similarity=1.037 Sum_probs=51.9
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 013163 90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144 (448)
Q Consensus 90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 144 (448)
|||++|||+++++.++||++||+|+++||||++...+.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999997556789999999999999986
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.57 E-value=2.1e-15 Score=134.17 Aligned_cols=67 Identities=24% Similarity=0.426 Sum_probs=61.5
Q ss_pred cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163 89 RDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF 159 (448)
Q Consensus 89 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 159 (448)
+.+|++|||+++| |.+|||+|||++|+++|||++++ +++|++|++||++|+|+.+|..||.+|.+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 5689999999999 99999999999999999999753 4689999999999999999999999997543
No 52
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.54 E-value=2e-15 Score=150.85 Aligned_cols=103 Identities=31% Similarity=0.557 Sum_probs=88.3
Q ss_pred ccccccccccchhHHHHHHhhhcCCcccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----Ch
Q 013163 52 NFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD-----DP 126 (448)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-----~~ 126 (448)
-|+.++...+.+|+..+++..++.... .......|+|||||++.+++..|||++||+|+.||||||-+. ..
T Consensus 65 If~lR~If~ivgWl~i~~L~~~I~~~k----~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rs 140 (610)
T COG5407 65 IFKLRKIFTIVGWLVISYLISNIRTLK----IEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRS 140 (610)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHH
Confidence 567778889999999999988774411 112456899999999999999999999999999999999654 35
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccc
Q 013163 127 EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA 158 (448)
Q Consensus 127 ~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~ 158 (448)
+.|+++++|++||+.|+|+..|++|-.||+..
T Consensus 141 e~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 141 EYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 78999999999999999999999999999754
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=1.9e-13 Score=125.03 Aligned_cols=65 Identities=26% Similarity=0.478 Sum_probs=58.0
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163 89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
.|||++|||++. ++..+|+++||+|+++||||+....++ +.++|..|++||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999995 788999999999999999999765432 56799999999999999999999984
No 54
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=2.8e-13 Score=138.68 Aligned_cols=119 Identities=26% Similarity=0.477 Sum_probs=87.0
Q ss_pred eeccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC-
Q 013163 226 TELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG- 288 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G- 288 (448)
....|+.|+|+|... | ....+|+.|+|+|+++ ...|..|+|.|.+.. .+-..-.|
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 239 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP--------GEYCHECGGSGRIRRRVRTTVKIPAGVEDGT 239 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC--------CCCCCCCCCceeEEEEEEEEEEeCCCCCCCC
Confidence 346899999999642 1 1255899999999865 567999999985432 11101111
Q ss_pred ------------------------------------------------------CeEEe--cceEEEEEecCCCCCCcee
Q 013163 289 ------------------------------------------------------ARVVK--GSKSVKLDIMPGVDNNETL 312 (448)
Q Consensus 289 ------------------------------------------------------~g~v~--~~k~l~V~Ip~G~~~G~~i 312 (448)
...+. ..+.++|.||+|+++|+++
T Consensus 240 ~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~i 319 (369)
T PRK14282 240 VLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVF 319 (369)
T ss_pred EEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEE
Confidence 11111 1236899999999999999
Q ss_pred EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352 (448)
Q Consensus 313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~ 352 (448)
+|+|+|.+.+.++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus 320 ri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~ 359 (369)
T PRK14282 320 RLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE 359 (369)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999999876555689999999999999999999887543
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-13 Score=137.57 Aligned_cols=68 Identities=47% Similarity=0.753 Sum_probs=64.3
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
+..+|||.|||++++|+..|||+|||++|+.||||+|... .++|.+|++|-+||.+|+||.+|..||.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 3468999999999999999999999999999999999877 7899999999999999999999999996
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.2e-14 Score=130.39 Aligned_cols=68 Identities=51% Similarity=0.839 Sum_probs=63.1
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG 155 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g 155 (448)
...|.|++|||+++|+.+||++|||+||+++|||++++ +++.+.|+.|..||++|.|.+.|..||-+-
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 45799999999999999999999999999999999985 777799999999999999999999999643
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=3.2e-13 Score=122.76 Aligned_cols=65 Identities=31% Similarity=0.519 Sum_probs=57.3
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHhhhccccccccccc
Q 013163 89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
.|||++|||++. ++..+|+++||+|+++||||++.+..+ +.+.+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999996 789999999999999999999875332 34568899999999999999999975
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=6.6e-13 Score=121.28 Aligned_cols=67 Identities=24% Similarity=0.434 Sum_probs=59.9
Q ss_pred CccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163 87 SARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 87 ~~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
...|||++|||++. .+..+|+++||+|+++||||++...++ +.++|..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 45799999999997 678999999999999999999876543 56789999999999999999999985
No 59
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=7.3e-13 Score=121.49 Aligned_cols=66 Identities=24% Similarity=0.413 Sum_probs=58.2
Q ss_pred ccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHH-----HHHHHHHHHHhhhccccccccccc
Q 013163 88 ARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPEAE-----KKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 88 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~-----~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
..|||++|||++. ++..+|+++||+|+++||||++...++++ +.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3799999999995 68999999999999999999987665544 446899999999999999999984
No 60
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=9e-13 Score=134.78 Aligned_cols=119 Identities=25% Similarity=0.474 Sum_probs=88.4
Q ss_pred eeccCCCCCCCCCCC-----CC----ccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC-
Q 013163 226 TELPCEACGGEGVPP-----GV----KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG- 288 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-----~~----~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G- 288 (448)
....|+.|+|+|... |. ...+|+.|+|.|+++ ...|+.|+|.|.+.. .+-..-.|
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 235 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP--------EEKCPRCNGTGTVVVNEDISVKIPKGATDNL 235 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc--------cCCCCCCCCceeEEEeeEEEEEECCCCCCCc
Confidence 356899999999642 11 146899999999865 678999999986532 11111111
Q ss_pred ----------------------------------------------------CeEEec-ceEEEEEecCCCCCCceeEEe
Q 013163 289 ----------------------------------------------------ARVVKG-SKSVKLDIMPGVDNNETLKVF 315 (448)
Q Consensus 289 ----------------------------------------------------~g~v~~-~k~l~V~Ip~G~~~G~~i~~~ 315 (448)
...+.. ..+++|.||+|+++|++++|+
T Consensus 236 ~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~ 315 (365)
T PRK14290 236 RLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIK 315 (365)
T ss_pred EEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEEC
Confidence 111111 126889999999999999999
Q ss_pred ccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163 316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352 (448)
Q Consensus 316 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~ 352 (448)
|+|.+.+.+..+|||||+|+|..|+.|++++.+|+.+
T Consensus 316 g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~ 352 (365)
T PRK14290 316 GAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE 352 (365)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9999887666789999999999999999999888655
No 61
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.36 E-value=9.3e-13 Score=101.48 Aligned_cols=61 Identities=48% Similarity=1.107 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEE-eeeccccCCCe
Q 013163 230 CEACGGEGVPPGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHII-TNWCKSCKGAR 290 (448)
Q Consensus 230 C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g 290 (448)
|+.|+|+|..++..+.+|+.|+|+|++.... +.++++.+|+.|+|+|+++ +++|+.|+|.+
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8999999999999999999999999987543 5678999999999999999 99999999974
No 62
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.8e-12 Score=132.42 Aligned_cols=116 Identities=22% Similarity=0.423 Sum_probs=84.8
Q ss_pred eccCCCCCCCCCCC---C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC------
Q 013163 227 ELPCEACGGEGVPP---G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG------ 288 (448)
Q Consensus 227 ~~~C~~C~GsG~~~---~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G------ 288 (448)
...|+.|+|+|... | ....+|+.|+|+|.++ ..+|..|+|.|.+.. .+-..-.|
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~ 234 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII--------SNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMR 234 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc--------CCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEe
Confidence 46799999998642 1 2356899999999875 567999999985532 01000011
Q ss_pred -------------------------------------------------CeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163 289 -------------------------------------------------ARVVK--GSKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 289 -------------------------------------------------~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
...+. ..+.++|.||+|+++|++++|+|+
T Consensus 235 g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~Gk 314 (365)
T PRK14285 235 GKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNE 314 (365)
T ss_pred eccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCC
Confidence 11111 122688999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 350 (448)
|.+.+.+...|||||+|+|+.|+.|.+++..|+
T Consensus 315 G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 347 (365)
T PRK14285 315 GMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL 347 (365)
T ss_pred CccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 998776556799999999999999998887654
No 63
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=9.1e-13 Score=134.79 Aligned_cols=118 Identities=19% Similarity=0.388 Sum_probs=85.1
Q ss_pred eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccc---------
Q 013163 227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKS--------- 285 (448)
Q Consensus 227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~--------- 285 (448)
...|+.|+|+|... .....+|+.|+|+|+.+ ...|..|+|.|.+... +-..
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 232 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI--------VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR 232 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec--------CcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEc
Confidence 46799999998642 11356899999999865 5679999998865320 0000
Q ss_pred ----------------------------------------------cCCCeEEec-ceEEEEEecCCCCCCceeEEeccC
Q 013163 286 ----------------------------------------------CKGARVVKG-SKSVKLDIMPGVDNNETLKVFRSG 318 (448)
Q Consensus 286 ----------------------------------------------C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~~~g~G 318 (448)
+.+...+.. ...++|.||+|+++|++++|+|+|
T Consensus 233 g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G 312 (366)
T PRK14294 233 GEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKG 312 (366)
T ss_pred cCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCC
Confidence 001111110 014688899999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163 319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352 (448)
Q Consensus 319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~ 352 (448)
.+.+.+..+|||||+|+|..|+.|.+++.+|+..
T Consensus 313 ~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 313 IPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 9877656789999999999999999998877544
No 64
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7e-13 Score=133.75 Aligned_cols=66 Identities=36% Similarity=0.586 Sum_probs=63.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccc
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQV 154 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~ 154 (448)
..|+|.+|||++++|+++||+.||++|...|||||. .|.|+|.|+.++.|||+|+|+++|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 689999999999999999999999999999999998 689999999999999999999999999963
No 65
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.2e-12 Score=134.25 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=49.4
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~ 352 (448)
.++|.||+|+++|++++|+|+|.+...+...|||||+|+|..|+.+++++.+|+.+
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~ 347 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE 347 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 46888999999999999999999876656689999999999999999998887544
No 66
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=1.2e-12 Score=134.31 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=49.9
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~ 352 (448)
.++|.||+|+++|++++|+|+|.+.+.+...|||||+|+|..|+.|++++.+|+.+
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~ 344 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEE 344 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 57888999999999999999999876656789999999999999999999887554
No 67
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.29 E-value=3.8e-12 Score=107.71 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=48.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 143 (448)
+...++|+||||+++||.+|||++||+|++++|||++. + .+.|++|++||++|.
T Consensus 62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 44579999999999999999999999999999999853 2 357899999999985
No 68
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=5.8e-12 Score=129.94 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=48.2
Q ss_pred eEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163 296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350 (448)
Q Consensus 296 k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 350 (448)
..++|+||+|+++|++++|+|+|.+.+.+..+|||||+|+|..++.++.++..|+
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 360 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL 360 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 5788999999999999999999998776567899999999999988887776654
No 69
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.27 E-value=3.9e-12 Score=130.37 Aligned_cols=115 Identities=23% Similarity=0.481 Sum_probs=82.4
Q ss_pred eccCCCCCCCCCCC---C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ec-----------
Q 013163 227 ELPCEACGGEGVPP---G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WC----------- 283 (448)
Q Consensus 227 ~~~C~~C~GsG~~~---~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C----------- 283 (448)
...|+.|+|+|... + ....+|+.|+|+|.++ ..+|..|+|.|.+... +-
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~ 233 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII--------KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHT 233 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe--------CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEe
Confidence 46799999998642 1 1345899999999875 5679999998865320 00
Q ss_pred -------------------------------------------cc-cCCCeEEec--ceEEEEEecCCCCCCceeEEecc
Q 013163 284 -------------------------------------------KS-CKGARVVKG--SKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 284 -------------------------------------------~~-C~G~g~v~~--~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
.. +.+...+.. .+.++|+||+|+++|++++|+|+
T Consensus 234 g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~ 313 (372)
T PRK14300 234 GEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSK 313 (372)
T ss_pred ccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCC
Confidence 00 111111211 24789999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI 349 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL 349 (448)
|.+.+.+..+|||||+|+|..|..+.-+...+
T Consensus 314 G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~ 345 (372)
T PRK14300 314 GMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL 345 (372)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99877656789999999999998776655443
No 70
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.26 E-value=4e-12 Score=130.24 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=46.7
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 350 (448)
.++|+||+|+++|++++|+|+|.+.+.+..+|||||+|+|..|+.+..+..+++
T Consensus 291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l 344 (373)
T PRK14301 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELL 344 (373)
T ss_pred cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 478899999999999999999999876667899999999999988777665543
No 71
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.26 E-value=7e-12 Score=122.63 Aligned_cols=59 Identities=39% Similarity=0.546 Sum_probs=52.3
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHhhhcc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD--D-----PEAEKKFQEVSKAYEVLKD 144 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~--~-----~~a~~~f~~i~~Ay~~L~d 144 (448)
+...++|++|||++++|.+|||+|||+|+++||||++.+ . +.|+++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999642 1 3588999999999999985
No 72
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=5.3e-12 Score=129.29 Aligned_cols=118 Identities=24% Similarity=0.439 Sum_probs=84.0
Q ss_pred eeccCCCCCCCCCCCC---------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccc----
Q 013163 226 TELPCEACGGEGVPPG---------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKS---- 285 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~---- 285 (448)
....|+.|+|+|.... ....+|+.|.|+|.++ ...|..|+|.|.+... +-..
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 225 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII--------KQKCATCGGKGKVRKRKKINVKVPAGIDHGQ 225 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc--------cccCCCCCCeeEEeeeEEEEEEECCcCCCCC
Confidence 3467999999996421 1246899999999875 5679999998855321 0000
Q ss_pred ---------------------------------------------------cCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163 286 ---------------------------------------------------CKGARVVKG-SKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 286 ---------------------------------------------------C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~ 313 (448)
|.+...+.. ...++|+||+|+++|++++
T Consensus 226 ~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~r 305 (371)
T PRK14287 226 QLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFR 305 (371)
T ss_pred EEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEE
Confidence 000111110 0147888999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEE
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHV 351 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~ 351 (448)
|+|+|.+...+...|||||+|+|..|+.++++...|+.
T Consensus 306 i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14287 306 LRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMR 343 (371)
T ss_pred EcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence 99999987665668999999999999988887766543
No 73
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=1.3e-11 Score=126.72 Aligned_cols=114 Identities=21% Similarity=0.462 Sum_probs=80.6
Q ss_pred eccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eec-------
Q 013163 227 ELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWC------- 283 (448)
Q Consensus 227 ~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C------- 283 (448)
...|+.|+|+|... + ....+|+.|+|+|.++ ..+|+.|+|.|.+.. .+-
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 227 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI--------PDPCHECAGDGRVRARREITVKIPAGVGDGMR 227 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee--------CCCCCCCCCceeEecceEEEEEECCCCCCCcE
Confidence 45799999999642 1 1245899999999875 567999999985532 000
Q ss_pred ------------------------------------------------cccCCCeEEec--ceEEEEEecCCCCCCceeE
Q 013163 284 ------------------------------------------------KSCKGARVVKG--SKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 284 ------------------------------------------------~~C~G~g~v~~--~k~l~V~Ip~G~~~G~~i~ 313 (448)
..|.+...+.. ...++|.||+|+++|++++
T Consensus 228 i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lr 307 (378)
T PRK14278 228 IRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVIT 307 (378)
T ss_pred EEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEE
Confidence 01111112221 3468899999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|+|+|.+...+...|||||+|+|.-+..+..+...
T Consensus 308 l~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~ 342 (378)
T PRK14278 308 LRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIE 342 (378)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 99999987665678999999999977665544433
No 74
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.5e-11 Score=126.02 Aligned_cols=115 Identities=22% Similarity=0.402 Sum_probs=81.2
Q ss_pred eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe---------------------
Q 013163 227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------------------- 280 (448)
Q Consensus 227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------------------- 280 (448)
...|+.|+|+|... .....+|+.|+|+|+++ ...|..|+|.|.+..
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 238 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI--------SNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS 238 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe--------cccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence 36799999998542 12345899999999865 567999999886532
Q ss_pred ---eeccc--------------------------------------cCCCeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163 281 ---NWCKS--------------------------------------CKGARVVK--GSKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 281 ---~~C~~--------------------------------------C~G~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
.+... +.+...+. ..+.++|+||+|+++|++++|+|+
T Consensus 239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~ 318 (372)
T PRK14286 239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGH 318 (372)
T ss_pred CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCC
Confidence 01110 00111111 133688999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI 349 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL 349 (448)
|.+...+...|||||+|+|.-++.+..+..+|
T Consensus 319 G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 350 (372)
T PRK14286 319 GMPYLGAYGKGDQHVIVKIEIPKKITRRQREL 350 (372)
T ss_pred CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHH
Confidence 99876656689999999999888766665543
No 75
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.9e-11 Score=125.11 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=83.0
Q ss_pred eeccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccccCC-----
Q 013163 226 TELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKSCKG----- 288 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~C~G----- 288 (448)
....|+.|+|+|... .....+|+.|+|+|+++ ...|..|+|.|.+... +-..-.|
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l 226 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII--------KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVL 226 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc--------cccCccCCCcceEEEEEEEEEecCCCCCCCCEEEE
Confidence 346899999999642 12245899999999875 5679999999865421 1001001
Q ss_pred -------------------------------------------------CeEEec--ceEEEEEecCCCCCCceeEEecc
Q 013163 289 -------------------------------------------------ARVVKG--SKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 289 -------------------------------------------------~g~v~~--~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
.-.+.. .+.++|.||+|+++|++++|+|+
T Consensus 227 ~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~ 306 (369)
T PRK14288 227 KNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE 306 (369)
T ss_pred ccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence 001110 22588999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI 349 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL 349 (448)
|.+.+.+...|||||+|+|+.|+.+..+...+
T Consensus 307 G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~ 338 (369)
T PRK14288 307 GVKHPESSYRGSLIVELQVIYPKSLNKEQQEL 338 (369)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 99977645579999999999998877665443
No 76
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.2e-11 Score=126.89 Aligned_cols=115 Identities=25% Similarity=0.502 Sum_probs=79.5
Q ss_pred eeccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee---------------
Q 013163 226 TELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN--------------- 281 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~--------------- 281 (448)
....|+.|+|+|... + ....+|+.|+|+|+++ ..+|+.|+|.|.+.+.
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~ 230 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI--------KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee--------cCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence 346799999998642 1 1345899999999865 5679999999865320
Q ss_pred ---------ecc--------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163 282 ---------WCK--------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 282 ---------~C~--------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~ 313 (448)
+.. -+.+...+.. ...++|.||+|+++|++++
T Consensus 231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~ 310 (376)
T PRK14280 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFR 310 (376)
T ss_pred EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEE
Confidence 000 0001111110 0147888999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|+|+|.+...+...|||||+|+|..++.+..+...
T Consensus 311 i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~ 345 (376)
T PRK14280 311 LKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE 345 (376)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 99999987655678999999999988765544433
No 77
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.22 E-value=1.3e-11 Score=125.94 Aligned_cols=53 Identities=30% Similarity=0.453 Sum_probs=47.1
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANI 349 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL 349 (448)
.++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|..++.+++++.++
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~ 346 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL 346 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 57899999999999999999999877666789999999999999888877654
No 78
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.21 E-value=1.2e-11 Score=127.61 Aligned_cols=114 Identities=26% Similarity=0.434 Sum_probs=80.0
Q ss_pred eeccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ec----------
Q 013163 226 TELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WC---------- 283 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C---------- 283 (448)
....|+.|+|+|... .....+|+.|+|+|+++ ...|..|+|.|.+... +-
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 260 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII--------EDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRL 260 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe--------CCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEE
Confidence 346899999999652 12356899999999876 5679999999866420 00
Q ss_pred -------c--------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeEEecc
Q 013163 284 -------K--------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 284 -------~--------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
. .|.+...+.. ...++|+||+|+++|++++|+|+
T Consensus 261 ~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~ 340 (392)
T PRK14279 261 AGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGR 340 (392)
T ss_pred eCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEECCC
Confidence 0 0000001100 11578899999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|.+... +.+|||||+|+|.-++.+..+...
T Consensus 341 G~p~~~-~~~GDL~I~~~v~~P~~Ls~~q~~ 370 (392)
T PRK14279 341 GVPKRS-GGAGDLLVTVKVAVPPNLDGAAAE 370 (392)
T ss_pred CCCCCC-CCCCCEEEEEEEECCCCCCHHHHH
Confidence 998643 568999999999988765544433
No 79
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=4.2e-11 Score=122.90 Aligned_cols=121 Identities=23% Similarity=0.432 Sum_probs=87.1
Q ss_pred CccccCcCCCCCCceEEeecceeeeEecccCCceeEEE------------eeeccccCCCeEEecceEEEEEecCCCCCC
Q 013163 242 VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII------------TNWCKSCKGARVVKGSKSVKLDIMPGVDNN 309 (448)
Q Consensus 242 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G 309 (448)
.+...|+.|.|+|... -....+|+.|+|+|.+. ..+|..|.|.|.+.... .
T Consensus 141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C------- 203 (374)
T PRK14293 141 PHLETCETCRGSGAKP-----GTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDP-----C------- 203 (374)
T ss_pred eccccCCCCCCcCCCC-----CCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccC-----C-------
Confidence 3466899999999743 11246899999999754 25799999988643211 0
Q ss_pred ceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEE
Q 013163 310 ETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKV 389 (448)
Q Consensus 310 ~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~ 389 (448)
-. |.+...|.. ...+.|.||||+++|+++
T Consensus 204 --~~------------------------------------------------C~G~g~v~~-~~~~~V~IppG~~~G~~i 232 (374)
T PRK14293 204 --DA------------------------------------------------CGGQGVKQV-TKKLKINIPAGVDTGTRL 232 (374)
T ss_pred --CC------------------------------------------------CCCCccccc-ceEEEEEeCCCCCCCCEE
Confidence 00 111111111 124578999999999999
Q ss_pred EEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 013163 390 VLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430 (448)
Q Consensus 390 ~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~ 430 (448)
+|+|+|++.......|||||+|+|..|+.++.++.+|+.++
T Consensus 233 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~ 273 (374)
T PRK14293 233 RVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEI 273 (374)
T ss_pred EEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEe
Confidence 99999998654456899999999999999999998876554
No 80
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=1.4e-11 Score=126.55 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=43.7
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
.++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|.-+..+..+...
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 348 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE 348 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 4788899999999999999999987765678999999999988765554433
No 81
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=1.8e-11 Score=126.38 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=80.2
Q ss_pred eeccCCCCCCCCCCCC---------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ecc-----
Q 013163 226 TELPCEACGGEGVPPG---------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCK----- 284 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~----- 284 (448)
....|+.|+|+|.... ....+|+.|+|+|+++ ...|+.|+|.|.+... +-.
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~ 249 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV--------KDRCPACYGEGIKQGEVTVKVTVPAGVQDGN 249 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee--------CCCCCCCCCCccEecceEEEEecCCCCCCCC
Confidence 3468999999996421 1245899999999875 5679999998865320 000
Q ss_pred --------------------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163 285 --------------------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 285 --------------------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~ 313 (448)
-+.+...+.. ...++|+||+|+++|++++
T Consensus 250 ~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~r 329 (397)
T PRK14281 250 YLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLR 329 (397)
T ss_pred EEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEE
Confidence 0111111111 1147888999999999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|+|+|.+.+.+...|||||+|+|.-+..+..+...
T Consensus 330 i~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~ 364 (397)
T PRK14281 330 IPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKE 364 (397)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 99999987665678999999999977765554433
No 82
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=2.6e-11 Score=124.69 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=43.4
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
.++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-+..+..+...
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~ 350 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKE 350 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHH
Confidence 5788899999999999999999987665678999999999977765544433
No 83
>PHA02624 large T antigen; Provisional
Probab=99.14 E-value=3.6e-11 Score=127.24 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=55.8
Q ss_pred ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccc
Q 013163 88 ARDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVY 151 (448)
Q Consensus 88 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~y 151 (448)
.+++|++|||+++| +.+|||+|||++|++||||++. ++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999974 257899999999999999999998
No 84
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=8e-11 Score=121.29 Aligned_cols=113 Identities=26% Similarity=0.462 Sum_probs=78.6
Q ss_pred eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eecc----------
Q 013163 227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCK---------- 284 (448)
Q Consensus 227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~---------- 284 (448)
...|+.|+|+|... .....+|+.|+|+|.++ ..+|..|.|.|.+.. .+-.
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~ 254 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA--------DDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLR 254 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe--------ccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEc
Confidence 46799999998642 12345899999999865 567999999885532 0000
Q ss_pred ---------------------------------------------ccCCCeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163 285 ---------------------------------------------SCKGARVVK--GSKSVKLDIMPGVDNNETLKVFRS 317 (448)
Q Consensus 285 ---------------------------------------------~C~G~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~ 317 (448)
.+.+...+. ..+.++|+||+|+++|++++|+|+
T Consensus 255 g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~ 334 (389)
T PRK14295 255 GKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGK 334 (389)
T ss_pred ccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCC
Confidence 011111111 123788999999999999999999
Q ss_pred CCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 318 GGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|.+.. ++.+|||||+|+|.-+..+.-+...
T Consensus 335 G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~ 364 (389)
T PRK14295 335 GAVRK-DGTRGDLLVTVEVAVPKDLSGKARE 364 (389)
T ss_pred CcCCC-CCCCCCEEEEEEEECCCCCCHHHHH
Confidence 99864 3568999999999977765544433
No 85
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=5e-11 Score=122.79 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
.++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-++.+..+..+
T Consensus 306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~ 357 (386)
T PRK14277 306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE 357 (386)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 3678899999999999999999987655568999999999977655544433
No 86
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=4.5e-11 Score=123.19 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=42.4
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccC
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREG 346 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G 346 (448)
.++|.||+|+++|++++++|+|.+.+.+..+|||||+|+|+-+..+..+.
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q 354 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEE 354 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHH
Confidence 57889999999999999999999877666789999999999766544443
No 87
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=7e-11 Score=121.43 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.0
Q ss_pred EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163 297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
.++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-++....+...
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ 348 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKE 348 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence 5789999999999999999999987655578999999999976655544433
No 88
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=8e-11 Score=120.62 Aligned_cols=114 Identities=18% Similarity=0.411 Sum_probs=77.7
Q ss_pred eccCCCCCCCCCCCCC---------ccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee----------------
Q 013163 227 ELPCEACGGEGVPPGV---------KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN---------------- 281 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 281 (448)
...|+.|+|+|..... ...+|+.|+|+|+++ ...|+.|+|.|.+...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 237 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII--------KNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQ 237 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee--------cccccCCCCceEEEEEEEEEEEECCCCCCCCE
Confidence 4679999999965311 245899999999876 5779999999855320
Q ss_pred --------ecc---------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163 282 --------WCK---------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK 313 (448)
Q Consensus 282 --------~C~---------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~ 313 (448)
... .|.+...+.. ...++|.||+|+++|++++
T Consensus 238 i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~r 317 (372)
T PRK14296 238 IKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELII 317 (372)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEE
Confidence 000 0000001110 0047788999999999999
Q ss_pred EeccCCCCC-CCCCCccEEEEEEEEecccccccCcc
Q 013163 314 VFRSGGADP-DGNQPGDLYVTIKVREDPVFRREGAN 348 (448)
Q Consensus 314 ~~g~G~~~~-~g~~~GDL~v~i~v~~h~~f~R~G~D 348 (448)
|+|+|.+.. .++..|||||+|+|.-++.+..+...
T Consensus 318 i~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~ 353 (372)
T PRK14296 318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE 353 (372)
T ss_pred EcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 999999743 33457999999999977765544433
No 89
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.2e-10 Score=119.60 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163 298 VKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350 (448)
Q Consensus 298 l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~ 350 (448)
.+|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|+.++.+..+...|+
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 342 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL 342 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 46889999999999999999998876667899999999999988877665543
No 90
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=2.6e-10 Score=117.30 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=40.0
Q ss_pred eEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecc
Q 013163 296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDP 340 (448)
Q Consensus 296 k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~ 340 (448)
+.++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|.-+.
T Consensus 302 ~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 302 KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 368999999999999999999999877656789999999999664
No 91
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.05 E-value=3.4e-10 Score=117.44 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=78.7
Q ss_pred eeccCCCCCCCCCCC-----C----CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccc----
Q 013163 226 TELPCEACGGEGVPP-----G----VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKS---- 285 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~-----~----~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~---- 285 (448)
....|+.|+|+|... + ....+|+.|+|+|.++. ...+|..|+|.|.+.. .+-..
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~ 238 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP------ESKKCKNCSGKGVKKTRKILEVNIDKGVPNQH 238 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc------ccccCCcCCCcceeeeeeEEEEeeCCCCCCCc
Confidence 456899999999631 1 12458999999998752 2468999999996532 11111
Q ss_pred --------------------------------------------------cCCCeEEe--cceEEEEEecCC--CCCCce
Q 013163 286 --------------------------------------------------CKGARVVK--GSKSVKLDIMPG--VDNNET 311 (448)
Q Consensus 286 --------------------------------------------------C~G~g~v~--~~k~l~V~Ip~G--~~~G~~ 311 (448)
|.+...+. ..+.++|+|||| +++|++
T Consensus 239 ~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~ 318 (421)
T PTZ00037 239 KITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDI 318 (421)
T ss_pred EEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcE
Confidence 11111111 122688889999 999999
Q ss_pred eEEeccCCCCCCC-CCCccEEEEEEEEec--ccccccC
Q 013163 312 LKVFRSGGADPDG-NQPGDLYVTIKVRED--PVFRREG 346 (448)
Q Consensus 312 i~~~g~G~~~~~g-~~~GDL~v~i~v~~h--~~f~R~G 346 (448)
++|+|+|.+...+ +..|||||+|+|.-+ ..+..+.
T Consensus 319 ~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~q 356 (421)
T PTZ00037 319 KVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEE 356 (421)
T ss_pred EEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHH
Confidence 9999999986543 467999999999976 5554443
No 92
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-09 Score=99.66 Aligned_cols=67 Identities=36% Similarity=0.545 Sum_probs=60.7
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163 87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
-.-++|++|.|.++.+.++||+.||+|++..|||+|++| +.|...|..|.+||..|-|+..|..-+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 356899999999999999999999999999999999998 6699999999999999999987765543
No 93
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=3.9e-09 Score=104.81 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=65.6
Q ss_pred ccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCC
Q 013163 342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLT 420 (448)
Q Consensus 342 f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls 420 (448)
+.|+|.||++.+.|||.||++|+++.| +++| .+.|+||||+++|++++++|+|++. |||||+|+|+-++.+.
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~ 197 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFR 197 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeE
Confidence 357899999999999999999999998 6787 5789999999999999999999973 9999999999777665
Q ss_pred HH
Q 013163 421 QR 422 (448)
Q Consensus 421 ~~ 422 (448)
.+
T Consensus 198 R~ 199 (291)
T PRK14299 198 LE 199 (291)
T ss_pred EE
Confidence 33
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.89 E-value=2.3e-09 Score=98.03 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=57.2
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163 89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
.|||++||+++. .+..+++++||+|.+++|||+....++ +.+.-..||+||.+|+||-+|+.|-.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999996 899999999999999999999765433 45567889999999999999999964
No 95
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.87 E-value=2.2e-09 Score=96.85 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHhhhcccccccccccc
Q 013163 101 ATASEIKKAYYGLAKKLHPDTNKDDP-----EAEKKFQEVSKAYEVLKDDEKRSVYDQV 154 (448)
Q Consensus 101 a~~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~yd~~ 154 (448)
.+..+|+++||+|+++||||+..... .+.+.|..|++||++|+||.+|+.|+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 47889999999999999999854432 2678999999999999999999999864
No 96
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.74 E-value=2e-08 Score=84.63 Aligned_cols=60 Identities=32% Similarity=0.769 Sum_probs=50.4
Q ss_pred eeccCCCCCCCCCCCCCccccCcCCCCCCceEEee-cceeeeEecccCCceeEEEeeeccccCCCeEEec
Q 013163 226 TELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS-GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKG 294 (448)
Q Consensus 226 ~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 294 (448)
..+.|..|+|+|. .+|+.|+|+|++..+. +.++++.+|+.|+|+|+. .|+.|+|.+.+..
T Consensus 40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCC------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 3578999999997 3899999999987655 346778999999999975 4999999987653
No 97
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.73 E-value=3.7e-08 Score=98.60 Aligned_cols=74 Identities=20% Similarity=0.435 Sum_probs=62.0
Q ss_pred ccCcceEEEEEeCHHHHhcCCeeee----ecCC--C--------cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEE
Q 013163 344 REGANIHVDSVLSVTQAILGGTIQV----PTLT--G--------DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYV 409 (448)
Q Consensus 344 R~G~DL~~~~~Isl~eAllG~~~~v----~tld--G--------~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V 409 (448)
++|.||++.+.|||.||+.|+...| ++++ | .+.|.||+|+++|++++++|+|+|..++..+|||||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v 194 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWL 194 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEE
Confidence 4688999999999999999995443 5554 3 357889999999999999999999765567899999
Q ss_pred EEEEECCCC
Q 013163 410 HFNVSIPTN 418 (448)
Q Consensus 410 ~~~V~~P~~ 418 (448)
+|+|. |..
T Consensus 195 ~i~v~-ph~ 202 (306)
T PRK10266 195 VIHIA-PHP 202 (306)
T ss_pred EEEEc-CCC
Confidence 99999 643
No 98
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.62 E-value=2.5e-08 Score=79.99 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=38.8
Q ss_pred ceEEEEEecCCCCCCceeEEeccCCCCCCCC-CCccEEEEEEEEecccccc
Q 013163 295 SKSVKLDIMPGVDNNETLKVFRSGGADPDGN-QPGDLYVTIKVREDPVFRR 344 (448)
Q Consensus 295 ~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~-~~GDL~v~i~v~~h~~f~R 344 (448)
.+.++|.||+|+++|++++++|+|.+...+. ..|||+|+++|.-+..+..
T Consensus 26 g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 26 GKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp S-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 4678899999999999999999999776555 8999999999997766543
No 99
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.9e-08 Score=94.25 Aligned_cols=68 Identities=34% Similarity=0.455 Sum_probs=58.6
Q ss_pred ccCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163 88 ARDYYDVLGVNK---NATASEIKKAYYGLAKKLHPDTNK--DDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG 155 (448)
Q Consensus 88 ~~d~y~iLgv~~---~a~~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g 155 (448)
..|+|.+|||+. .|++.+|.+|.++...+||||+.. ++....+.|+.|++||++|+|+.+|.+||..-
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 368999999997 689999999999999999999862 22335678999999999999999999999743
No 100
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.4e-07 Score=98.61 Aligned_cols=56 Identities=41% Similarity=0.707 Sum_probs=47.9
Q ss_pred CCccCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 013163 86 MSARDYYDVLGVNKN----ATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~----a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d 144 (448)
+..-+.|+||.|+-+ -..+.||++|++||.+|||||| ||..++|..+++|||.|+.
T Consensus 1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence 445678999999863 2347899999999999999998 5778899999999999983
No 101
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.5e-06 Score=79.52 Aligned_cols=55 Identities=31% Similarity=0.695 Sum_probs=48.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHh-hhcc
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE-VLKD 144 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~-~L~d 144 (448)
+.+|.+|||..+|+.+|++.||.+||+++|||...+ ....++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999764 334568999999998 8864
No 102
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.07 E-value=3.3e-06 Score=77.82 Aligned_cols=49 Identities=27% Similarity=0.498 Sum_probs=43.7
Q ss_pred eEecccCCceeEEEe--eeccccCCCeEEecceEEEEEecCCCCCCceeEEe
Q 013163 266 NQTCRQCGGTGHIIT--NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315 (448)
Q Consensus 266 ~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~ 315 (448)
+.+|+.|+|+|++++ .+|+.|+|.|.++.++.+.+.+ .|+++|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 567888888888887 6899999999999999999999 999999999864
No 103
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.3e-05 Score=80.06 Aligned_cols=105 Identities=29% Similarity=0.541 Sum_probs=75.7
Q ss_pred cCCCCCCCCCCC-------C---CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe--------e---------
Q 013163 229 PCEACGGEGVPP-------G---VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------N--------- 281 (448)
Q Consensus 229 ~C~~C~GsG~~~-------~---~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------~--------- 281 (448)
.|..|.|+|... + .....|..|+|+|..+ .....|+.|.|++.+.. .
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~------~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki 218 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI------SLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKI 218 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCccccc------cccccCcccccchhhhhhheeeccccCCCccccee
Confidence 699999998762 1 1245789999998753 34678888888873321 0
Q ss_pred ------------------------------ec--------------cccCCCeEEe--cceEEEEEecCC--CCCCceeE
Q 013163 282 ------------------------------WC--------------KSCKGARVVK--GSKSVKLDIMPG--VDNNETLK 313 (448)
Q Consensus 282 ------------------------------~C--------------~~C~G~g~v~--~~k~l~V~Ip~G--~~~G~~i~ 313 (448)
++ .-|.....+. +.+.+++.++|| +.+|++++
T Consensus 219 ~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~ 298 (337)
T KOG0712|consen 219 TFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR 298 (337)
T ss_pred eeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence 00 2333333332 456899999999 99999999
Q ss_pred EeccCCCCCCCCCCccEEEEEEEEecc
Q 013163 314 VFRSGGADPDGNQPGDLYVTIKVREDP 340 (448)
Q Consensus 314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~ 340 (448)
+.|+|++..... .|||||.++|+-++
T Consensus 299 v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 299 VEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred ecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 999999987644 99999999999665
No 104
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00011 Score=60.81 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=48.1
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccc
Q 013163 85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145 (448)
Q Consensus 85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 145 (448)
.|..+..-.||||+++++.+.||+|+|++....|||+..+ |=. =.+|++|+++|...
T Consensus 52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYl---AsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYL---ASKINEAKDLLEGT 108 (112)
T ss_pred ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHH---HHHHHHHHHHHhcc
Confidence 3666788899999999999999999999999999999874 432 23699999999754
No 105
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.54 E-value=0.00029 Score=76.63 Aligned_cols=70 Identities=50% Similarity=0.888 Sum_probs=66.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF 159 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~ 159 (448)
+|||+||||+++|+.++||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 589999999999999999999999999999999975 7888999999999999999999999999987654
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.53 E-value=5.4e-05 Score=79.33 Aligned_cols=64 Identities=31% Similarity=0.716 Sum_probs=35.6
Q ss_pred cCCCCCCCCCCCCCccccCcCCCCCCceEEee-------------cceeeeEecccCCceeEEE-eeeccccCCCeEEe
Q 013163 229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHS-------------GFMSINQTCRQCGGTGHII-TNWCKSCKGARVVK 293 (448)
Q Consensus 229 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-------------g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g~v~ 293 (448)
.|+.|+|+|-..- ..+.|+.|+|+|..-... +......+|+.|.|+|++. ...|..|.|.+.+.
T Consensus 4 ~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 4 KCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred cccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 5777777664322 234577777777652110 1223355677777777654 35666666665443
No 107
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00067 Score=66.38 Aligned_cols=42 Identities=26% Similarity=0.756 Sum_probs=29.0
Q ss_pred cCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEE
Q 013163 246 KCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~ 301 (448)
.|..|+|+|. ..|++|.|.|. .+|.+|.|.|.+..-..+.|.
T Consensus 236 ~C~~C~G~G~-----------~~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 236 LCYMCHGRGI-----------KECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred hhhhccCCCc-----------ccCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence 4666666663 46777777775 579999999877766555554
No 108
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.88 E-value=0.001 Score=51.13 Aligned_cols=42 Identities=31% Similarity=0.843 Sum_probs=29.3
Q ss_pred CcCCCCCCceEEeecceeeeEecccCCceeEEEe------------eeccccCCCeEEe
Q 013163 247 CRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT------------NWCKSCKGARVVK 293 (448)
Q Consensus 247 C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~ 293 (448)
|+.|+|+|... -....+|+.|+|+|.+.. ..|..|+|.|.+.
T Consensus 1 C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKP-----GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-S-----TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCC-----CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 88999999731 123569999999998753 6899999998875
No 109
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0015 Score=57.83 Aligned_cols=66 Identities=32% Similarity=0.568 Sum_probs=52.8
Q ss_pred ccCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163 88 ARDYYDVLGVNK--NATASEIKKAYYGLAKKLHPDTNKD----D-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 88 ~~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~----~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
..+||.++|... ...++-++.-|--..++.|||+... + ..|.+.-.++++||..|.||-+|+.|-.
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 468999997554 4566667779999999999998321 1 2477889999999999999999999963
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.57 E-value=0.0014 Score=55.54 Aligned_cols=41 Identities=37% Similarity=0.797 Sum_probs=29.9
Q ss_pred cCCCCCCCCCCC----C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163 229 PCEACGGEGVPP----G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT 280 (448)
Q Consensus 229 ~C~~C~GsG~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 280 (448)
.|+.|+|+|... + ....+|+.|+|+|. ..|..|.|+|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk-----------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS-----------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce-----------eeCCCCCCCEEEee
Confidence 799999988652 1 12457999999985 24999999987754
No 111
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0025 Score=67.26 Aligned_cols=47 Identities=36% Similarity=0.931 Sum_probs=34.5
Q ss_pred eccCCCCCCCCCCCCCc------------------cccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163 227 ELPCEACGGEGVPPGVK------------------PEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT 280 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~~------------------~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 280 (448)
...|+.|+|+|...... -.+|+.|+|+|.+. .-.+|+.|+|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCCceeEEe
Confidence 35699999998652111 23799999999864 3578999999998864
No 112
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.0028 Score=58.25 Aligned_cols=54 Identities=39% Similarity=0.548 Sum_probs=46.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CC-----hHHHHHHHHHHHHHhhh
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNK--DD-----PEAEKKFQEVSKAYEVL 142 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~--~~-----~~a~~~f~~i~~Ay~~L 142 (448)
.+.|.+|++...++..+|+++||++....|||+-. .. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999732 12 24888999999999853
No 113
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.52 E-value=0.0087 Score=55.36 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=6.8
Q ss_pred EecccCCceeEEE
Q 013163 267 QTCRQCGGTGHII 279 (448)
Q Consensus 267 ~~C~~C~G~G~~~ 279 (448)
.+|+.|+|+|++.
T Consensus 116 ~~C~~C~G~G~v~ 128 (186)
T TIGR02642 116 RECDTCAGTGRFR 128 (186)
T ss_pred CCCCCCCCccEEe
Confidence 3455555555543
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.008 Score=55.24 Aligned_cols=63 Identities=29% Similarity=0.388 Sum_probs=48.6
Q ss_pred chhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163 91 YYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 91 ~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
+...+|..+.+ ..+.++..|+.+.+.||||+....++ +.+.+..++.||.+|.||-+|+.|=.
T Consensus 3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34444555443 33668999999999999999765433 45689999999999999999999964
No 115
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.69 E-value=0.032 Score=58.79 Aligned_cols=44 Identities=34% Similarity=0.477 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCh---H----HHHHHHHHHHHHhh
Q 013163 98 NKNATASEIKKAYYGLAKKLHPDTNKDDP---E----AEKKFQEVSKAYEV 141 (448)
Q Consensus 98 ~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~----a~~~f~~i~~Ay~~ 141 (448)
..=.+.++||+||||..+..||||.+..+ + |++.|..+++||..
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 33458899999999999999999977652 2 55666666666653
No 116
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.02 Score=56.31 Aligned_cols=59 Identities=27% Similarity=0.671 Sum_probs=39.7
Q ss_pred eccCCCCCCCCCCC--CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEe
Q 013163 227 ELPCEACGGEGVPP--GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK 293 (448)
Q Consensus 227 ~~~C~~C~GsG~~~--~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 293 (448)
...|+.|+|.|... -..+..|..|-|. . .++ .-....|..|+|+|. .+|.+|+|.|.+.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~--~--~~k-~gt~~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV--P--PPK-IGTHDLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCC--C--CCC-CCccchhhhccCCCc---ccCCcccCCCCcc
Confidence 56899999988532 2346678888771 1 111 122467999999996 4699999887543
No 117
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.089 Score=52.31 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=45.8
Q ss_pred eeeeeeeccCCCCCCCCCC-----CCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecc
Q 013163 221 TVTFQTELPCEACGGEGVP-----PGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGS 295 (448)
Q Consensus 221 ~i~~~~~~~C~~C~GsG~~-----~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 295 (448)
.........|..|.|+|.. ..-...+|..|.|.|.+. ...|..|.|.|.+...+=..-.....+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~--------~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~ 246 (288)
T KOG0715|consen 175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL--------RDNCQACSGAGQVRRAKDIMIVLPAGVRSA 246 (288)
T ss_pred cccccccccchhhhCcccccccccCCcceeecccccccceec--------cchHHHhhcchhhhhheeEEeecCcccccc
Confidence 3344567899999999922 111122799999999876 344999999995543222122222333344
Q ss_pred eEEEEEecCC
Q 013163 296 KSVKLDIMPG 305 (448)
Q Consensus 296 k~l~V~Ip~G 305 (448)
.++++..+..
T Consensus 247 ~~l~~~~~~~ 256 (288)
T KOG0715|consen 247 DTLRFAGHGN 256 (288)
T ss_pred cEEEEecCCc
Confidence 4445444433
No 118
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=89.52 E-value=0.75 Score=40.02 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccc
Q 013163 86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146 (448)
Q Consensus 86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 146 (448)
++......||+|++..+.++|.+.|.+|-...+|++..+ .=.=.+|..|.|.|..+.
T Consensus 55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999998753 112245778888887544
No 119
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=0.4 Score=46.66 Aligned_cols=51 Identities=27% Similarity=0.584 Sum_probs=33.4
Q ss_pred ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccC
Q 013163 228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCK 287 (448)
Q Consensus 228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 287 (448)
..|..|.|.+. .+|..|+|+-+++.+-...-.-.+|..|+=.|-+ +|+.|.
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv---rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV---RCPVCS 280 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeeeccCCCcEEECcccCCCCce---eCCccC
Confidence 56777876653 5788888887776532223334678888877765 366664
No 120
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.84 E-value=0.53 Score=54.07 Aligned_cols=26 Identities=38% Similarity=0.796 Sum_probs=15.9
Q ss_pred cccCCceeEEE---------eeeccccCCCeEEec
Q 013163 269 CRQCGGTGHII---------TNWCKSCKGARVVKG 294 (448)
Q Consensus 269 C~~C~G~G~~~---------~~~C~~C~G~g~v~~ 294 (448)
|+.|.|.|.+. ..+|..|+|.++-.+
T Consensus 739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 66666666554 256777777766544
No 121
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.90 E-value=1.7 Score=42.45 Aligned_cols=38 Identities=24% Similarity=0.684 Sum_probs=32.0
Q ss_pred ccCcCCCCCCceEEeecceeeeEecccCCceeEEEe--------eeccccCCCeEEe
Q 013163 245 EKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------NWCKSCKGARVVK 293 (448)
Q Consensus 245 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~g~v~ 293 (448)
..|..|+|.+++ +|..|+|+-++.. .+|..|+-.|.++
T Consensus 230 ~~C~~CGg~rFl-----------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL-----------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE-----------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 479999998864 6999999998876 6899999888765
No 122
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=80.82 E-value=9.8 Score=34.48 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=20.1
Q ss_pred CeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163 364 GTIQVPTLTGDVVLKVRPGTQPGQKVVLKN 393 (448)
Q Consensus 364 ~~~~v~tldG~~~l~i~~g~~~g~~~~l~g 393 (448)
.++.||-| .+.||||++-|..-.|.|
T Consensus 75 a~i~IPEl----~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 75 ATISIPEL----DLEIPPGPLGGFITTVEG 100 (160)
T ss_pred cEEEeeee----eEEecCCCCCcEEEehHH
Confidence 46777765 488999998888888854
No 123
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=80.68 E-value=14 Score=34.56 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=19.6
Q ss_pred CeeeeecCCCcEEEEeCCC-CCCCcEEEEcC
Q 013163 364 GTIQVPTLTGDVVLKVRPG-TQPGQKVVLKN 393 (448)
Q Consensus 364 ~~~~v~tldG~~~l~i~~g-~~~g~~~~l~g 393 (448)
.++.||-| .+.|||| ++.|..-.|.|
T Consensus 74 ati~IPEl----~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 74 ATIRIPEL----GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred cEEEccce----EEEECCCccCCceEEeeHh
Confidence 46677765 4889999 68898888844
No 124
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.85 E-value=2.1 Score=38.24 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCCCCccccCcCCCCCCceE
Q 013163 228 LPCEACGGEGVPPGVKPEKCRRCKGSGMES 257 (448)
Q Consensus 228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~ 257 (448)
..|..|.|.+. .+|..|+|+=+++
T Consensus 100 ~~C~~Cgg~rf------v~C~~C~Gs~k~~ 123 (147)
T cd03031 100 GVCEGCGGARF------VPCSECNGSCKVF 123 (147)
T ss_pred CCCCCCCCcCe------EECCCCCCcceEE
Confidence 45777766653 4677777776655
No 125
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=79.64 E-value=2.7 Score=39.30 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013163 98 NKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143 (448)
Q Consensus 98 ~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 143 (448)
+++||.+||.+|+.++..+|- +|+. .-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~~---~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDEK---SREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCHH---HHHHHHHHHHHHH
Confidence 579999999999999999992 2333 3456889999543
No 126
>PF13446 RPT: A repeated domain in UCH-protein
Probab=78.59 E-value=3.2 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.5
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHH
Q 013163 89 RDYYDVLGVNKNATASEIKKAYYGLAK 115 (448)
Q Consensus 89 ~d~y~iLgv~~~a~~~eIk~ayr~la~ 115 (448)
.+.|+.|||+++.+++.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998776
No 127
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=77.55 E-value=1.3 Score=51.13 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=7.9
Q ss_pred eeccccCCCeEEec
Q 013163 281 NWCKSCKGARVVKG 294 (448)
Q Consensus 281 ~~C~~C~G~g~v~~ 294 (448)
.+|..|+|.++..+
T Consensus 762 ~~C~~C~G~R~~~e 775 (943)
T PRK00349 762 VPCDVCKGKRYNRE 775 (943)
T ss_pred ccCccccCcccccc
Confidence 45666666655443
No 128
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=77.01 E-value=13 Score=33.72 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=19.0
Q ss_pred CeeeeecCCCcEEEEeCCCC-CCCcEEEEcC
Q 013163 364 GTIQVPTLTGDVVLKVRPGT-QPGQKVVLKN 393 (448)
Q Consensus 364 ~~~~v~tldG~~~l~i~~g~-~~g~~~~l~g 393 (448)
+++.||-|+ +.||||+ +.|..-.|.|
T Consensus 72 a~i~IPEl~----lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 72 ATIRIPELG----IKIEPGPASQGYISNIEG 98 (163)
T ss_pred cEEEcccee----EEecCCCcCCceEEehHh
Confidence 467777664 8899997 6888777743
No 129
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.42 E-value=2.4 Score=42.86 Aligned_cols=54 Identities=33% Similarity=0.485 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHhhhccccccccccc
Q 013163 100 NATASEIKKAYYGLAKKLHPDTNKD----DPEAEKKFQEVSKAYEVLKDDEKRSVYDQ 153 (448)
Q Consensus 100 ~a~~~eIk~ayr~la~~~HPD~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~ 153 (448)
-++..+|..+|+..++..||++-.. .-..++.|+.|.+||++|.+..+|..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 3678899999999999999998631 12356679999999999999766666664
No 130
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=75.93 E-value=2.7 Score=49.06 Aligned_cols=67 Identities=19% Similarity=0.405 Sum_probs=40.3
Q ss_pred cceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCcee---EEEeeeccccCCCeEEe
Q 013163 217 GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTG---HIITNWCKSCKGARVVK 293 (448)
Q Consensus 217 G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G---~~~~~~C~~C~G~g~v~ 293 (448)
+....+.+. ...|+.|..... ...|+.|+..-.. ...|+.|+..= ......|+.|...-+-.
T Consensus 658 ~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~---------vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 658 GGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP---------VYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred CCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC---------ceeCccCCCccCCCccccccCCCCCCccccc
Confidence 333334443 578999976532 2389999876421 24799998741 00134799999875544
Q ss_pred cceEE
Q 013163 294 GSKSV 298 (448)
Q Consensus 294 ~~k~l 298 (448)
..+.+
T Consensus 723 ~~~~i 727 (1337)
T PRK14714 723 QRRTI 727 (1337)
T ss_pred ceEEe
Confidence 44433
No 131
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=75.49 E-value=1.5 Score=53.67 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=15.2
Q ss_pred CcEEEEEEEECCCC-CCHHHHHHHHHHH
Q 013163 405 GDQYVHFNVSIPTN-LTQRQRELIEEFA 431 (448)
Q Consensus 405 GDL~V~~~V~~P~~-ls~~q~~ll~~~~ 431 (448)
..||| ..=|++ |.++..+.|-+++
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l 1745 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQL 1745 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHH
Confidence 36665 566765 8877776665554
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=72.64 E-value=4.3 Score=36.24 Aligned_cols=38 Identities=24% Similarity=0.719 Sum_probs=30.4
Q ss_pred cccCcCCCCCCceEEeecceeeeEecccCCceeEEEe---------eeccccCCCeEE
Q 013163 244 PEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT---------NWCKSCKGARVV 292 (448)
Q Consensus 244 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~---------~~C~~C~G~g~v 292 (448)
...|..|+|.+.+ +|..|+|+-++.. .+|..|+-.|.+
T Consensus 99 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 99 GGVCEGCGGARFV-----------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCcCeE-----------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 3469999999864 6999999987763 489999887765
No 133
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=71.62 E-value=2.8 Score=46.93 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=21.2
Q ss_pred ecccCCceeEEEe---------eeccccCCCeEEecceEEEEE
Q 013163 268 TCRQCGGTGHIIT---------NWCKSCKGARVVKGSKSVKLD 301 (448)
Q Consensus 268 ~C~~C~G~G~~~~---------~~C~~C~G~g~v~~~k~l~V~ 301 (448)
.|..|.|.|.+.. .+|..|+|.++-+ ++++|.
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~--EtLev~ 772 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR--ETLEVK 772 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCccccc--ceEEEE
Confidence 5777777776642 5788888877654 344444
No 134
>PRK04023 DNA polymerase II large subunit; Validated
Probab=71.40 E-value=3.4 Score=47.10 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=43.5
Q ss_pred chhhhhc-cceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCC
Q 013163 210 SFMEAVQ-GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKG 288 (448)
Q Consensus 210 sl~e~~~-G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G 288 (448)
++.+|+. +....+.+. ...|+.|.-.+ ....|+.|+..-.. ...|+.|+-... ...|++|.-
T Consensus 609 ~i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~---------i~fCP~CG~~~~--~y~CPKCG~ 671 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP---------VYRCPRCGIEVE--EDECEKCGR 671 (1121)
T ss_pred cHHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc---------ceeCccccCcCC--CCcCCCCCC
Confidence 4566666 444444443 35799997553 34689999876221 357999955433 356999987
Q ss_pred CeEEecce
Q 013163 289 ARVVKGSK 296 (448)
Q Consensus 289 ~g~v~~~k 296 (448)
.......+
T Consensus 672 El~~~s~~ 679 (1121)
T PRK04023 672 EPTPYSKR 679 (1121)
T ss_pred CCCccceE
Confidence 65443333
No 135
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=69.19 E-value=11 Score=32.05 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHhhhcc
Q 013163 99 KNATASEIKKAYYGLAKKLHPDTNKDDPE----AEKKFQEVSKAYEVLKD 144 (448)
Q Consensus 99 ~~a~~~eIk~ayr~la~~~HPD~~~~~~~----a~~~f~~i~~Ay~~L~d 144 (448)
+..+..+++.|.|.+-++.|||.....|+ -++-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 45677899999999999999997655554 34567777777676653
No 136
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.02 E-value=2.8 Score=48.34 Aligned_cols=35 Identities=26% Similarity=0.675 Sum_probs=28.2
Q ss_pred cCcCCCCCCceEEeecce-eeeEecccCCceeEEEe
Q 013163 246 KCRRCKGSGMESIHSGFM-SINQTCRQCGGTGHIIT 280 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~-~~~~~C~~C~G~G~~~~ 280 (448)
.|+.|+|.|++...++++ ....+|+.|+|+.+...
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 773 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE 773 (924)
T ss_pred CCCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence 599999999988777765 45679999999987643
No 137
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=63.02 E-value=23 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceEEEEEeCHHHHhcCCeeeeecCCCcEEEEe-CCCCCCCcEEEEcC
Q 013163 348 NIHVDSVLSVTQAILGGTIQVPTLTGDVVLKV-RPGTQPGQKVVLKN 393 (448)
Q Consensus 348 DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i-~~g~~~g~~~~l~g 393 (448)
||...+-.| -..++.||-|+ +.| |.+++.|..-.|.|
T Consensus 65 DL~r~VvkS-----~~ati~IPEl~----~ei~P~~~~~g~iTTVEG 102 (161)
T PF03367_consen 65 DLNRQVVKS-----DTATIEIPELG----LEIEPGPSQGGFITTVEG 102 (161)
T ss_dssp HHC-EEEE------TT-EEEEGGGT----EEE--TTTT-SEEEEHHH
T ss_pred HhcceEEec-----CcEEEEEeecc----eEEccCCCCCceEEehHH
Confidence 444444444 34567788775 678 56688887777754
No 138
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=61.21 E-value=5.6 Score=46.01 Aligned_cols=35 Identities=26% Similarity=0.669 Sum_probs=27.2
Q ss_pred cCcCCCCCCceEEeecce-eeeEecccCCceeEEEe
Q 013163 246 KCRRCKGSGMESIHSGFM-SINQTCRQCGGTGHIIT 280 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~-~~~~~C~~C~G~G~~~~ 280 (448)
.|+.|.|.|.+...++++ ....+|+.|+|+.....
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 599999999988777665 34578999999886543
No 139
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=60.30 E-value=40 Score=31.66 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=28.7
Q ss_pred eEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCC-CCCCCCCccEE
Q 013163 266 NQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA-DPDGNQPGDLY 331 (448)
Q Consensus 266 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~-~~~g~~~GDL~ 331 (448)
...|..|+..+.+-..+-..-....-++..+.++|.|..=...|.-+.-. +|.. -..+..|||.+
T Consensus 119 ~l~C~aCGa~~~v~~~~~~~~~~~~~~~~~e~~~v~Ie~l~~~G~GVak~-~g~~vfV~galpGE~V 184 (201)
T PRK12336 119 MLRCDACGAHRPVKKRKASSETQREAIEEGKTYEVEITGTGRKGDGVAKK-GKYTIFVPGAKKGEVV 184 (201)
T ss_pred EEEcccCCCCccccccccccCCCCCCCccCCEEEEEEEEccCCCceEEEE-CCEEEEeCCCCCCCEE
Confidence 34566666666554332222111111233344566665555555555321 1211 12245677764
No 140
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=58.47 E-value=44 Score=26.16 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDT 121 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~ 121 (448)
.++--+++++++-|+..||+.|-++..+|..=-.
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 4566788999999999999999988888874333
No 141
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=57.57 E-value=8.1 Score=43.49 Aligned_cols=35 Identities=26% Similarity=0.673 Sum_probs=28.8
Q ss_pred cCcCCCCCCceEEeecce-eeeEecccCCceeEEEe
Q 013163 246 KCRRCKGSGMESIHSGFM-SINQTCRQCGGTGHIIT 280 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~-~~~~~C~~C~G~G~~~~ 280 (448)
.|..|+|.|.+...|.++ ..-.+|+.|+|+-+-..
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 699999999998877776 46689999999976543
No 142
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.21 E-value=15 Score=27.56 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q 013163 410 HFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 410 ~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
.....||.+||+.||..+..++..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~ 40 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASR 40 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999988754
No 143
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.29 E-value=13 Score=37.40 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.0
Q ss_pred eccCCCCCCC
Q 013163 227 ELPCEACGGE 236 (448)
Q Consensus 227 ~~~C~~C~Gs 236 (448)
...||.|.+.
T Consensus 187 ~~~CPvCGs~ 196 (309)
T PRK03564 187 RQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCc
Confidence 4567777554
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=52.32 E-value=11 Score=42.19 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=34.9
Q ss_pred eccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCC
Q 013163 227 ELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGA 289 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 289 (448)
.+.|..|. ....|+.|...=. +.+. +-+..|..|+-. ..+...|+.|.+.
T Consensus 435 ~l~C~~Cg--------~v~~Cp~Cd~~lt-~H~~---~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG--------YIAECPNCDSPLT-LHKA---TGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCC--------CcccCCCCCcceE-EecC---CCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 47899995 4568999977622 2111 235679999877 4556789999986
No 145
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=52.21 E-value=4.7 Score=45.25 Aligned_cols=55 Identities=20% Similarity=0.492 Sum_probs=0.0
Q ss_pred eccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceE
Q 013163 227 ELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKS 297 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~ 297 (448)
...|+.|.-.. ....|+.|+..-.. .-.|+.|+-. +....|++|.........+.
T Consensus 655 ~r~Cp~Cg~~t-----~~~~Cp~CG~~T~~---------~~~Cp~C~~~--~~~~~C~~C~~~~~~~~~~~ 709 (900)
T PF03833_consen 655 RRRCPKCGKET-----FYNRCPECGSHTEP---------VYVCPDCGIE--VEEDECPKCGRETTSYSKQK 709 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCcccCCcc-----hhhcCcccCCcccc---------ceeccccccc--cCccccccccccCcccceee
Confidence 35788886443 34578888665432 3568888753 23458999987654443333
No 146
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=51.50 E-value=17 Score=26.57 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCcEEEEEEEECCCC--CCHHHHHHH
Q 013163 403 SFGDQYVHFNVSIPTN--LTQRQRELI 427 (448)
Q Consensus 403 ~~GDL~V~~~V~~P~~--ls~~q~~ll 427 (448)
..||+.|-|+|.+|+- ||.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 3599999999999995 666665544
No 147
>PRK05978 hypothetical protein; Provisional
Probab=47.27 E-value=9 Score=34.24 Aligned_cols=25 Identities=32% Similarity=0.872 Sum_probs=12.3
Q ss_pred cCcCCCCCCceEEeecceeeeEecccCC
Q 013163 246 KCRRCKGSGMESIHSGFMSINQTCRQCG 273 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~ 273 (448)
.||+| |.|..+ .++..+...|+.|+
T Consensus 35 rCP~C-G~G~LF--~g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLF--RAFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCccc--ccccccCCCccccC
Confidence 45555 344433 24445555666664
No 148
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=46.76 E-value=16 Score=28.28 Aligned_cols=51 Identities=22% Similarity=0.615 Sum_probs=24.1
Q ss_pred cCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe------eeccccCCC
Q 013163 229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT------NWCKSCKGA 289 (448)
Q Consensus 229 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------~~C~~C~G~ 289 (448)
.||.|+.. .........|..|... +..+..||.|+-.=++.+ -.|..|+|-
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~---------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~gL 59 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKD---------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHGL 59 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--E---------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-E
T ss_pred cCCCCCCc-cEEeCCEEECcccccc---------ceecccCCCcccHHHHHHHhcccceeeccCCce
Confidence 46666544 1111124456666542 455778888887776654 577877763
No 149
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=45.99 E-value=8.2 Score=31.83 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=7.9
Q ss_pred eEecccCCceeEE
Q 013163 266 NQTCRQCGGTGHI 278 (448)
Q Consensus 266 ~~~C~~C~G~G~~ 278 (448)
-..|.+|+|.|..
T Consensus 32 fk~c~rcgg~G~s 44 (95)
T PF03589_consen 32 FKDCERCGGRGYS 44 (95)
T ss_pred hhhhhhhcCCCCC
Confidence 3456667666643
No 150
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.35 E-value=34 Score=29.67 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=13.7
Q ss_pred ceEEEEEecCCCCCCceeEEe
Q 013163 295 SKSVKLDIMPGVDNNETLKVF 315 (448)
Q Consensus 295 ~k~l~V~Ip~G~~~G~~i~~~ 315 (448)
...+++.-+.+.+.||.+.+.
T Consensus 41 ~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 41 PITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred cEEEEecCCCCCCCCCEEEEE
Confidence 355666667777777776654
No 151
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.90 E-value=14 Score=41.06 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCC
Q 013163 228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGA 289 (448)
Q Consensus 228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 289 (448)
..|+.|+..- .....-|+.|+..-. ...|+.|+-.=..-...|..|...
T Consensus 2 ~~Cp~Cg~~n---~~~akFC~~CG~~l~----------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFEN---PNNNRFCQKCGTSLT----------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcC---CCCCccccccCCCCC----------CCcCCCCCCCCCcccccccccCCc
Confidence 4689986442 223456999944421 246999987644445789988865
No 152
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=43.28 E-value=16 Score=30.95 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=15.9
Q ss_pred eeeeccCCCCCCCCCCCCCccccCcCCC
Q 013163 224 FQTELPCEACGGEGVPPGVKPEKCRRCK 251 (448)
Q Consensus 224 ~~~~~~C~~C~GsG~~~~~~~~~C~~C~ 251 (448)
+..+.+|+.|.-.-..-+..+..||.|+
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG 33 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCG 33 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCC
Confidence 3455677777554444444555666663
No 153
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=42.84 E-value=9.3 Score=47.02 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=21.5
Q ss_pred ecccCCceeEEEe---------eeccccCCCeEEecce
Q 013163 268 TCRQCGGTGHIIT---------NWCKSCKGARVVKGSK 296 (448)
Q Consensus 268 ~C~~C~G~G~~~~---------~~C~~C~G~g~v~~~k 296 (448)
.|+.|.|.|.+.. .+|..|+|.++-.+.-
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L 1646 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQ 1646 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHH
Confidence 5888888887642 5888888887766543
No 154
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=42.45 E-value=14 Score=19.28 Aligned_cols=13 Identities=54% Similarity=0.866 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhc
Q 013163 131 KFQEVSKAYEVLK 143 (448)
Q Consensus 131 ~f~~i~~Ay~~L~ 143 (448)
+|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4778888888774
No 155
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=40.40 E-value=68 Score=29.95 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=14.6
Q ss_pred EEEEEecCC-CCCCceeEEec
Q 013163 297 SVKLDIMPG-VDNNETLKVFR 316 (448)
Q Consensus 297 ~l~V~Ip~G-~~~G~~i~~~g 316 (448)
.+.+.|||| +..|..-++.|
T Consensus 80 El~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 80 ELGLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred ceEEEECCCccCCceEEeeHh
Confidence 566778888 67887777754
No 156
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=39.29 E-value=43 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q 013163 410 HFNVSIPTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 410 ~~~V~~P~~ls~~q~~ll~~~~~~ 433 (448)
.-...||.+||+.+|..+-+++..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~ 39 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRK 39 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999765
No 157
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.17 E-value=1.6e+02 Score=23.26 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=36.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHH-HHHHHHHHHHHhhhcc
Q 013163 88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD--PEA-EKKFQEVSKAYEVLKD 144 (448)
Q Consensus 88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a-~~~f~~i~~Ay~~L~d 144 (448)
.++--.+.++.+.||++||..|-.+..+|.-=-..+.. .+| ++.-.+|..|-.-|.|
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555667889999999999999999998754433321 222 2233455555554543
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=39.02 E-value=23 Score=39.56 Aligned_cols=57 Identities=26% Similarity=0.587 Sum_probs=37.2
Q ss_pred eeeeeeeee-----ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCC
Q 013163 219 TKTVTFQTE-----LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGA 289 (448)
Q Consensus 219 ~k~i~~~~~-----~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 289 (448)
..-+-+++. ..|..|. ....|+.|.+.=..... .-.-.|..|+-.- ....|+.|.+.
T Consensus 370 qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~----~~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSA----GGTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecC----CCeeECCCCcCCC--cCccCCCCcCC
Confidence 444555543 6898885 45689999876332211 1245699998753 46799999886
No 159
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=39.00 E-value=65 Score=29.15 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=14.1
Q ss_pred EEEEEecCCCCCCceeEEec
Q 013163 297 SVKLDIMPGVDNNETLKVFR 316 (448)
Q Consensus 297 ~l~V~Ip~G~~~G~~i~~~g 316 (448)
.+.+.||||...|..-+++|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 55667888887777666654
No 160
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=38.82 E-value=40 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHh
Q 013163 412 NVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 412 ~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
.+.||.+||+.||..|-++++..
T Consensus 19 ~l~F~p~ls~~eR~~vH~lA~~~ 41 (60)
T cd02641 19 ELEFPPTLSSHDRLLVHELAEEL 41 (60)
T ss_pred cEECCCCCCHHHHHHHHHHHHHc
Confidence 57899999999999999998763
No 161
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=38.48 E-value=19 Score=26.83 Aligned_cols=13 Identities=31% Similarity=1.037 Sum_probs=7.2
Q ss_pred eeeeEecccCCce
Q 013163 263 MSINQTCRQCGGT 275 (448)
Q Consensus 263 ~~~~~~C~~C~G~ 275 (448)
++++..|+.|+|.
T Consensus 14 YTLke~Cp~CG~~ 26 (59)
T COG2260 14 YTLKEKCPVCGGD 26 (59)
T ss_pred eeecccCCCCCCc
Confidence 4555566666544
No 162
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=38.10 E-value=17 Score=34.96 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=8.4
Q ss_pred CCcEEEEEEEEC
Q 013163 404 FGDQYVHFNVSI 415 (448)
Q Consensus 404 ~GDL~V~~~V~~ 415 (448)
.-+++|++++.+
T Consensus 201 vH~i~l~~Q~Tv 212 (238)
T PF07092_consen 201 VHNIVLHMQGTV 212 (238)
T ss_pred EEEEEEEEEEEE
Confidence 478888886543
No 163
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=37.78 E-value=21 Score=26.48 Aligned_cols=11 Identities=36% Similarity=1.211 Sum_probs=5.5
Q ss_pred eeeEecccCCc
Q 013163 264 SINQTCRQCGG 274 (448)
Q Consensus 264 ~~~~~C~~C~G 274 (448)
++...|+.|++
T Consensus 15 TLk~~CP~CG~ 25 (56)
T PRK13130 15 TLKEICPVCGG 25 (56)
T ss_pred EccccCcCCCC
Confidence 34455555553
No 164
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.73 E-value=33 Score=34.45 Aligned_cols=17 Identities=12% Similarity=-0.119 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhCCCCC
Q 013163 106 IKKAYYGLAKKLHPDTN 122 (448)
Q Consensus 106 Ik~ayr~la~~~HPD~~ 122 (448)
-++.+.+|..++.|..+
T Consensus 100 w~~~l~~LL~~l~~~~~ 116 (305)
T TIGR01562 100 WLPWLDALLAGYPAPAN 116 (305)
T ss_pred HHHHHHHHHHHhccccc
Confidence 36667777777777743
No 165
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=36.00 E-value=40 Score=21.10 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 013163 103 ASEIKKAYYGLAKKLHP 119 (448)
Q Consensus 103 ~~eIk~ayr~la~~~HP 119 (448)
.++.|.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 37889999999999993
No 166
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.86 E-value=51 Score=24.71 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Q 013163 411 FNVSIPTNLTQRQRELIEEFAKEE 434 (448)
Q Consensus 411 ~~V~~P~~ls~~q~~ll~~~~~~~ 434 (448)
-.+.||.+||+.+|.++-+++...
T Consensus 18 ~~l~f~p~lt~~eR~~vH~~a~~~ 41 (60)
T cd02640 18 RDMVFSPEFSKEERALIHQIAQKY 41 (60)
T ss_pred ceEEcCCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999997653
No 167
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.80 E-value=18 Score=34.78 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=7.3
Q ss_pred ccCcCCCCCCce
Q 013163 245 EKCRRCKGSGME 256 (448)
Q Consensus 245 ~~C~~C~G~G~~ 256 (448)
.+||.|+|+|.+
T Consensus 39 vtCPTCqGtGrI 50 (238)
T PF07092_consen 39 VTCPTCQGTGRI 50 (238)
T ss_pred CcCCCCcCCccC
Confidence 356666666654
No 168
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=35.69 E-value=8.1 Score=31.31 Aligned_cols=56 Identities=30% Similarity=0.670 Sum_probs=31.5
Q ss_pred eeeeeeccCCCCCCCCCC------CCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccC
Q 013163 222 VTFQTELPCEACGGEGVP------PGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCK 287 (448)
Q Consensus 222 i~~~~~~~C~~C~GsG~~------~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 287 (448)
-.++....|+.|+|.-.. |-+....|..|+ +.+.+..|--|++.|..-.-.|..|.
T Consensus 15 PGi~~G~LCEkCDgkC~ICDS~VRP~tlVRiC~eC~----------~Gs~q~~ciic~~~gV~d~~yc~ect 76 (110)
T KOG1705|consen 15 PGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECN----------YGSYQGRCVICGGVGVSDAYYCKECT 76 (110)
T ss_pred CCchhhhhHHhcCCcccccccccccceeeeeehhcC----------CccccCceEEecCCcccchHHHHHHH
Confidence 334445678888776533 222233455553 12345677777777766555666665
No 169
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.43 E-value=26 Score=37.77 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=30.8
Q ss_pred eccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCe
Q 013163 227 ELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGAR 290 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 290 (448)
...|..|. ....|+.|.+.=..... .-.-.|..|+-+- .+...|+.|.+..
T Consensus 213 ~~~C~~Cg--------~~~~C~~C~~~l~~h~~----~~~l~Ch~Cg~~~-~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCG--------YILCCPNCDVSLTYHKK----EGKLRCHYCGYQE-PIPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCc--------CccCCCCCCCceEEecC----CCeEEcCCCcCcC-CCCCCCCCCCCCe
Confidence 36788885 34689999764222111 1245688886433 2346788888754
No 170
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=34.26 E-value=6.6e+02 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHHH
Q 013163 418 NLTQRQRELIEEFAKE 433 (448)
Q Consensus 418 ~ls~~q~~ll~~~~~~ 433 (448)
.+|++..+.++++++.
T Consensus 258 ~~t~ed~e~i~elak~ 273 (682)
T COG1241 258 EITEEDEEEIKELAKR 273 (682)
T ss_pred cCCHHHHHHHHHHhcC
Confidence 5888888888888764
No 171
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.61 E-value=28 Score=30.23 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=17.2
Q ss_pred eeeeccCCCCCCCCCCCCCccccCcCCCC
Q 013163 224 FQTELPCEACGGEGVPPGVKPEKCRRCKG 252 (448)
Q Consensus 224 ~~~~~~C~~C~GsG~~~~~~~~~C~~C~G 252 (448)
+..+.+|+.|.-.-..-+..+..|+.|+-
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCC
Confidence 34556788876554444445666777643
No 172
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=33.16 E-value=58 Score=27.88 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=30.1
Q ss_pred EEeCCCCCCCcEEEEcCCCccCCCC------CCCCcEEEEEEEECCCC
Q 013163 377 LKVRPGTQPGQKVVLKNKGIKTRNS------FSFGDQYVHFNVSIPTN 418 (448)
Q Consensus 377 l~i~~g~~~g~~~~l~g~G~p~~~~------~~~GDL~V~~~V~~P~~ 418 (448)
..+|.+.++|+.+.|.|.=.+..+. ...+|+.+||++.|+++
T Consensus 3 ~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~~~di~lH~n~rf~~~ 50 (128)
T smart00276 3 LPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTGGDDIALHFNPRFNEN 50 (128)
T ss_pred ccCCCCCCCCCEEEEEEEECCCCCEEEEEeecCCCCEEEEEeccCCCC
Confidence 4578889999999998754332111 12379999999999863
No 173
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.79 E-value=51 Score=28.14 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=18.6
Q ss_pred ccceeeeee-eeeccCCCCCCCCCCCCCccccCcCCCCCCc
Q 013163 216 QGCTKTVTF-QTELPCEACGGEGVPPGVKPEKCRRCKGSGM 255 (448)
Q Consensus 216 ~G~~k~i~~-~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~ 255 (448)
.|+...+.. .....|..|+-.-.........||.|++...
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNV 99 (117)
T ss_pred CCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCCce
Confidence 344444442 3456777776333222222223666655543
No 174
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=32.18 E-value=96 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.2
Q ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHHH
Q 013163 407 QYVHFNVSIPT-NLTQRQRELIEEFAKE 433 (448)
Q Consensus 407 L~V~~~V~~P~-~ls~~q~~ll~~~~~~ 433 (448)
.+.-++|+.|. .||++|++-|+.|...
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 67788999995 6999999999988765
No 175
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=31.83 E-value=1.8e+02 Score=30.24 Aligned_cols=69 Identities=19% Similarity=0.384 Sum_probs=45.5
Q ss_pred CCCccEEEEEEEEe-cc----cccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccC
Q 013163 325 NQPGDLYVTIKVRE-DP----VFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKT 398 (448)
Q Consensus 325 ~~~GDL~v~i~v~~-h~----~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~ 398 (448)
..+||+.|+-+... .. ..-|+...+-..-.=.|.++|-+-.+++. +.+.+.+++..--.++++|.|...
T Consensus 90 l~~gDvAfR~NfaTvd~~~~vivDRRAGRi~~ee~~~l~~~l~~~~~e~~-----v~~~f~~g~~hR~vlV~rg~~~~d 163 (408)
T COG3635 90 LKPGDVAFRANFATVDEDGGVVVDRRAGRISTEEAEELADALNEEEVEIG-----VKVRFKAGVEHRAVLVLRGPGLSD 163 (408)
T ss_pred ccCCCEEEEeeeeEecCCCcEEEeccCCCCChhhHHHHHHHHhhhhcccc-----eEEEEEeccceEEEEEEecCCCcc
Confidence 45899999998765 32 22344444443444456666654444433 677888888888899999999873
No 176
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.82 E-value=53 Score=22.29 Aligned_cols=6 Identities=50% Similarity=1.365 Sum_probs=3.2
Q ss_pred CcCCCC
Q 013163 247 CRRCKG 252 (448)
Q Consensus 247 C~~C~G 252 (448)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 555544
No 177
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=31.56 E-value=35 Score=22.58 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=9.7
Q ss_pred CcCCCCCCceEEeecceeeeEecccCC
Q 013163 247 CRRCKGSGMESIHSGFMSINQTCRQCG 273 (448)
Q Consensus 247 C~~C~G~G~~~~~~g~~~~~~~C~~C~ 273 (448)
|+.|++.=...+..|--.....|+.|+
T Consensus 3 C~~CG~~l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 3 CPQCGGPLERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp -TTT--B-EEE--TT-SS-EEEETTTT
T ss_pred cccccChhhhhcCCCCCccceECCCCC
Confidence 556655522222233334456677664
No 178
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=31.52 E-value=57 Score=23.52 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=6.9
Q ss_pred cCcCCCCCCce
Q 013163 246 KCRRCKGSGME 256 (448)
Q Consensus 246 ~C~~C~G~G~~ 256 (448)
+||-|+|....
T Consensus 3 PCPfCGg~~~~ 13 (53)
T TIGR03655 3 PCPFCGGADVY 13 (53)
T ss_pred CCCCCCCccee
Confidence 56667666653
No 179
>PRK05580 primosome assembly protein PriA; Validated
Probab=29.59 E-value=36 Score=38.05 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=31.0
Q ss_pred eccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCe
Q 013163 227 ELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGAR 290 (448)
Q Consensus 227 ~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g 290 (448)
.+.|..|. ....|+.|.+. ..+... .-.-.|..|+-+- .+...|+.|.+..
T Consensus 381 ~~~C~~Cg--------~~~~C~~C~~~-l~~h~~---~~~l~Ch~Cg~~~-~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCG--------WVAECPHCDAS-LTLHRF---QRRLRCHHCGYQE-PIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCc--------CccCCCCCCCc-eeEECC---CCeEECCCCcCCC-CCCCCCCCCcCCe
Confidence 46888885 34579999873 222111 1235688887543 2346788887763
No 180
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=29.45 E-value=76 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.589 Sum_probs=16.1
Q ss_pred cCcCCCCCCceEEee------cceeeeEecccCC
Q 013163 246 KCRRCKGSGMESIHS------GFMSINQTCRQCG 273 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~------g~~~~~~~C~~C~ 273 (448)
.|+.|+....+..+. -+++.--.|..|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 577777666665321 2345555666665
No 181
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=29.43 E-value=42 Score=28.60 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=14.5
Q ss_pred cccCCceeEEEeeeccccCC
Q 013163 269 CRQCGGTGHIITNWCKSCKG 288 (448)
Q Consensus 269 C~~C~G~G~~~~~~C~~C~G 288 (448)
||.|++.=.+.+-.|..|+.
T Consensus 1 CPvCg~~l~vt~l~C~~C~t 20 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCGT 20 (113)
T ss_pred CCCCCCceEEEEEEcCCCCC
Confidence 67777776777777887775
No 182
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=28.86 E-value=56 Score=27.70 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=18.7
Q ss_pred hccceeeeee-eeeccCCCCCCCCCCCCCccccCcCCCCCCc
Q 013163 215 VQGCTKTVTF-QTELPCEACGGEGVPPGVKPEKCRRCKGSGM 255 (448)
Q Consensus 215 ~~G~~k~i~~-~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~ 255 (448)
+.|+...+.. .....|..|+....... ....||.|++...
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~~ 97 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQVVEIHQ-HDAQCPHCHGERL 97 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCC-cCccCcCCCCCCc
Confidence 3455544443 34567777764433221 1223555555443
No 183
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.83 E-value=57 Score=33.98 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=56.1
Q ss_pred cEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEE--EEcCCCccCCCCCCCCc
Q 013163 329 DLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKV--VLKNKGIKTRNSFSFGD 406 (448)
Q Consensus 329 DL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~--~l~g~G~p~~~~~~~GD 406 (448)
-+|++..+++++-|.-.+--+++...=.+.+-=.|.-..=++-++...|-||..++-|.++ .|-.+|||....+..++
T Consensus 370 pkve~~ev~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~~~k~qlLvradtnlGnilLN~Ll~kgMkctr~gknnv 449 (487)
T KOG2724|consen 370 PKVETVEVQEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPNDRGKFQLLVRADTNLGNILLNSLLNKGMKCTRVGKNNV 449 (487)
T ss_pred CeeEeecccCccchhccccceEEEecccccccccceeecccccccceeeeehhccchhHHHHHHhhcCCCcceeccCCce
Confidence 3566777777666665555555555555555434433333444467788999999989876 47889999766667788
Q ss_pred EEEEEE
Q 013163 407 QYVHFN 412 (448)
Q Consensus 407 L~V~~~ 412 (448)
|||++-
T Consensus 450 lIvcvp 455 (487)
T KOG2724|consen 450 LIVCVP 455 (487)
T ss_pred EEEEeC
Confidence 888765
No 184
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.05 E-value=43 Score=22.36 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=2.7
Q ss_pred EecccC
Q 013163 267 QTCRQC 272 (448)
Q Consensus 267 ~~C~~C 272 (448)
..|++|
T Consensus 26 vrC~~C 31 (37)
T PF13719_consen 26 VRCPKC 31 (37)
T ss_pred EECCCC
Confidence 344444
No 185
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.76 E-value=69 Score=27.19 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=17.3
Q ss_pred ccceeeeee-eeeccCCCCCCCCCCCCCccccCcCCCCCC
Q 013163 216 QGCTKTVTF-QTELPCEACGGEGVPPGVKPEKCRRCKGSG 254 (448)
Q Consensus 216 ~G~~k~i~~-~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G 254 (448)
.|+...+.. .....|..|+-.-... .....||.|++..
T Consensus 58 ega~L~I~~~p~~~~C~~Cg~~~~~~-~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 58 EGAKLNIEDEPVECECEDCSEEVSPE-IDLYRCPKCHGIM 96 (115)
T ss_pred CCCEEEEEeeCcEEEcccCCCEEecC-CcCccCcCCcCCC
Confidence 344444443 2346677776332221 1123455555544
No 186
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=26.30 E-value=2e+02 Score=25.88 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=59.0
Q ss_pred ceEEEEEeCHHHHhcCCeeeeecCCCcEE-EEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCC
Q 013163 348 NIHVDSVLSVTQAILGGTIQVPTLTGDVV-LKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLT 420 (448)
Q Consensus 348 DL~~~~~Isl~eAllG~~~~v~tldG~~~-l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls 420 (448)
++.....++..++..+....+.-...... ..++.+...+..+++++++.... ...++.+.++.+.......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 221 (237)
T COG2214 150 DLAANLADNFEEALAGVKKAVARLLGKALKSTIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFA 221 (237)
T ss_pred ceeeeeeccHHHHhcCcceeeeccccccccccCCcccccCceeeecccCCcCC--CCcccceeeeeccCCCCcc
Confidence 67788899999999999888887776543 68999999999999999998765 5689999999987765443
No 187
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=26.02 E-value=54 Score=29.24 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163 236 EGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT 280 (448)
Q Consensus 236 sG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 280 (448)
+|...|.....|..| |..+...-+ ..-.+|++|++..+...
T Consensus 104 sGE~~g~G~l~C~~C---g~~~~~~~~-~~l~~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 104 SGEVVGPGTLVCENC---GHEVELTHP-ERLPPCPKCGHTEFTRQ 144 (146)
T ss_pred cCcEecCceEecccC---CCEEEecCC-CcCCCCCCCCCCeeeeC
No 188
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=25.70 E-value=93 Score=21.00 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=15.1
Q ss_pred cCcCCCCCCceEEee------cceeeeEecccCC
Q 013163 246 KCRRCKGSGMESIHS------GFMSINQTCRQCG 273 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~------g~~~~~~~C~~C~ 273 (448)
.|+.|+.......+. .+++.--.|..|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 577777777665421 2455556677775
No 189
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=25.26 E-value=55 Score=22.50 Aligned_cols=7 Identities=86% Similarity=2.043 Sum_probs=3.8
Q ss_pred ecccCCc
Q 013163 268 TCRQCGG 274 (448)
Q Consensus 268 ~C~~C~G 274 (448)
.|.+|++
T Consensus 28 ~C~~C~~ 34 (40)
T PF08273_consen 28 ICRQCGG 34 (40)
T ss_dssp EETTTTB
T ss_pred ECCCCCC
Confidence 4666643
No 190
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=25.14 E-value=71 Score=20.92 Aligned_cols=10 Identities=50% Similarity=1.471 Sum_probs=4.7
Q ss_pred cCcCCCCCCc
Q 013163 246 KCRRCKGSGM 255 (448)
Q Consensus 246 ~C~~C~G~G~ 255 (448)
.|+.|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4444544443
No 191
>PF14353 CpXC: CpXC protein
Probab=24.67 E-value=66 Score=27.54 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=7.9
Q ss_pred eEecccCCceeE
Q 013163 266 NQTCRQCGGTGH 277 (448)
Q Consensus 266 ~~~C~~C~G~G~ 277 (448)
..+|+.|+....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 567777766654
No 192
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.42 E-value=79 Score=26.81 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=10.7
Q ss_pred hccceeeeeee-eeccCCCCC
Q 013163 215 VQGCTKTVTFQ-TELPCEACG 234 (448)
Q Consensus 215 ~~G~~k~i~~~-~~~~C~~C~ 234 (448)
..|+...+... ....|..|+
T Consensus 57 ~egA~L~i~~~p~~~~C~~Cg 77 (114)
T PRK03681 57 AEGCKLHLEEQEAECWCETCQ 77 (114)
T ss_pred cCCCEEEEEeeCcEEEcccCC
Confidence 34555554433 345677775
No 193
>smart00350 MCM minichromosome maintenance proteins.
Probab=23.98 E-value=1e+02 Score=33.12 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 013163 416 PTNLTQRQRELIEEFAKE 433 (448)
Q Consensus 416 P~~ls~~q~~ll~~~~~~ 433 (448)
-..+++++...|.++++.
T Consensus 309 i~~l~~~~q~~L~e~me~ 326 (509)
T smart00350 309 FDKMDDSDRTAIHEAMEQ 326 (509)
T ss_pred hhhCCHHHHHHHHHHHhc
Confidence 345777776666666543
No 194
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=23.76 E-value=1.3e+02 Score=26.70 Aligned_cols=36 Identities=33% Similarity=0.625 Sum_probs=25.3
Q ss_pred CCCcEEEEeCCCC--------CCCcEEEEcCCCccCCCCCCCCcEEE
Q 013163 371 LTGDVVLKVRPGT--------QPGQKVVLKNKGIKTRNSFSFGDQYV 409 (448)
Q Consensus 371 ldG~~~l~i~~g~--------~~g~~~~l~g~G~p~~~~~~~GDL~V 409 (448)
+||...+.||.|+ |++.++-|.|.|=+. ..|+|-|+
T Consensus 96 ~dG~~~i~IPaG~YDy~I~~P~~~~kiwIaGd~g~~---~tr~dDy~ 139 (161)
T PF10365_consen 96 VDGEASIDIPAGTYDYCIAAPQPGGKIWIAGDGGDG---PTRGDDYV 139 (161)
T ss_pred ecCceEEEecCceeEEEEecCCCCCeEEEecCCCCC---CccccceE
Confidence 3577777888873 688999999998542 24566554
No 195
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.54 E-value=39 Score=26.74 Aligned_cols=7 Identities=43% Similarity=1.298 Sum_probs=3.2
Q ss_pred ecccCCc
Q 013163 268 TCRQCGG 274 (448)
Q Consensus 268 ~C~~C~G 274 (448)
.|++|.|
T Consensus 23 ~CPrCrG 29 (88)
T COG3809 23 YCPRCRG 29 (88)
T ss_pred eCCcccc
Confidence 3444444
No 196
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.18 E-value=29 Score=29.87 Aligned_cols=24 Identities=38% Similarity=1.060 Sum_probs=11.2
Q ss_pred cCcCCCCCCceEEeecceeeeEecccC
Q 013163 246 KCRRCKGSGMESIHSGFMSINQTCRQC 272 (448)
Q Consensus 246 ~C~~C~G~G~~~~~~g~~~~~~~C~~C 272 (448)
.|++| |.|+.+ .|+......|..|
T Consensus 23 rCP~C-GeGrLF--~gFLK~~p~C~aC 46 (126)
T COG5349 23 RCPRC-GEGRLF--RGFLKVVPACEAC 46 (126)
T ss_pred CCCCC-CCchhh--hhhcccCchhhhc
Confidence 45666 444432 3344444445555
No 197
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=22.56 E-value=53 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=26.5
Q ss_pred EEEEeCHHHHhcC-CeeeeecCCCcE-EEEeCCC
Q 013163 351 VDSVLSVTQAILG-GTIQVPTLTGDV-VLKVRPG 382 (448)
Q Consensus 351 ~~~~Isl~eAllG-~~~~v~tldG~~-~l~i~~g 382 (448)
++..|-++||+.| +..+|++.|+++ .|.|.|.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd 51 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD 51 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCC
Confidence 4678999999999 579999999987 5777664
No 198
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.30 E-value=45 Score=28.23 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=15.1
Q ss_pred ccceeeeee-eeeccCCCCCCCCCCCCCccccCcCCCCCC
Q 013163 216 QGCTKTVTF-QTELPCEACGGEGVPPGVKPEKCRRCKGSG 254 (448)
Q Consensus 216 ~G~~k~i~~-~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G 254 (448)
.|+...+.. .....|..|+-....... ...||.|++..
T Consensus 58 e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~-~~~CP~Cgs~~ 96 (113)
T PF01155_consen 58 EGAELEIEEVPARARCRDCGHEFEPDEF-DFSCPRCGSPD 96 (113)
T ss_dssp TT-EEEEEEE--EEEETTTS-EEECHHC-CHH-SSSSSS-
T ss_pred cCCEEEEEecCCcEECCCCCCEEecCCC-CCCCcCCcCCC
Confidence 344444443 334667777654432211 13455555554
No 199
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.12 E-value=55 Score=22.48 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=3.8
Q ss_pred EecccCCc
Q 013163 267 QTCRQCGG 274 (448)
Q Consensus 267 ~~C~~C~G 274 (448)
..|+.|++
T Consensus 27 ~~CP~Cg~ 34 (42)
T PF09723_consen 27 VPCPECGS 34 (42)
T ss_pred CcCCCCCC
Confidence 34555544
No 200
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.66 E-value=1.1e+02 Score=25.94 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=12.0
Q ss_pred eEecccCCceeEEE--eeeccccCCC
Q 013163 266 NQTCRQCGGTGHII--TNWCKSCKGA 289 (448)
Q Consensus 266 ~~~C~~C~G~G~~~--~~~C~~C~G~ 289 (448)
...|..|+..-... ...|+.|.+.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCC
Confidence 34566665443332 1346666654
No 201
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=21.33 E-value=6.2e+02 Score=22.96 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=12.4
Q ss_pred CCccCCCCCCCCcEEEEEEE
Q 013163 394 KGIKTRNSFSFGDQYVHFNV 413 (448)
Q Consensus 394 ~G~p~~~~~~~GDL~V~~~V 413 (448)
+|+|...++.|=++-|.+++
T Consensus 89 ~G~~~TKsG~Rq~i~i~~~f 108 (161)
T PF15043_consen 89 EGVPPTKSGERQPIQISMQF 108 (161)
T ss_pred CCCCcccCCccccEEEEEEe
Confidence 56665555666676666665
No 202
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=21.32 E-value=74 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=28.5
Q ss_pred CCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh-cCCCChhhhc
Q 013163 403 SFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE-RGEYDKRAAA 444 (448)
Q Consensus 403 ~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~-~~~~~~~~~~ 444 (448)
.++|+.+.=.-.|-.+||++|...|..|.-.. +++..+..||
T Consensus 36 r~~D~L~~~ds~F~D~lTpDQVrAlHRlvTsSpe~d~~~a~aa 78 (92)
T PHA02681 36 RNKDLLPPGASSFEDKMTDDQVRAFHALVTSSPEDDPAPAPAA 78 (92)
T ss_pred cccccCCCCCchhhccCCHHHHHHHHHHHhCCCCCCCCcCccc
Confidence 45676665555677889999999999987543 4444444444
No 203
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.24 E-value=1e+02 Score=22.54 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=5.8
Q ss_pred ccCcCCCCCCce
Q 013163 245 EKCRRCKGSGME 256 (448)
Q Consensus 245 ~~C~~C~G~G~~ 256 (448)
.+||-| |...+
T Consensus 4 kPCPFC-G~~~~ 14 (61)
T PF14354_consen 4 KPCPFC-GSADV 14 (61)
T ss_pred cCCCCC-CCcce
Confidence 356666 44444
No 204
>PRK14051 negative regulator GrlR; Provisional
Probab=21.08 E-value=2.9e+02 Score=23.32 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=37.4
Q ss_pred ccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeec-CCCcEEEEeCCCCCCCcEEEEcCCCccC
Q 013163 328 GDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPT-LTGDVVLKVRPGTQPGQKVVLKNKGIKT 398 (448)
Q Consensus 328 GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~t-ldG~~~l~i~~g~~~g~~~~l~g~G~p~ 398 (448)
-||+++++-..|+.-..-+-+--+.+.|+-+-.-.|+.+.+.. ..|...+.|..-.+-=..++|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~akFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYAKFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEeeeeeeeeEEccCCCcc
Confidence 4677777666555443333333344555522222334344432 3444445554444444578999999984
No 205
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.99 E-value=1.4e+02 Score=22.61 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Q 013163 109 AYYGLAKKLHPDTNKDDPEAEKKFQEVSKA 138 (448)
Q Consensus 109 ayr~la~~~HPD~~~~~~~a~~~f~~i~~A 138 (448)
.|-.-.++.|||+.+ -.-+|-|++-.+|
T Consensus 27 nYVehmr~~hPd~p~--mT~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPP--MTYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCc--ccHHHHHHHHHHh
Confidence 467778889999976 2455667666554
No 206
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=20.85 E-value=1.4e+02 Score=22.05 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=5.7
Q ss_pred eccccCCCeEE
Q 013163 282 WCKSCKGARVV 292 (448)
Q Consensus 282 ~C~~C~G~g~v 292 (448)
.|++|+-.-.+
T Consensus 30 yCpKCK~EtlI 40 (55)
T PF14205_consen 30 YCPKCKQETLI 40 (55)
T ss_pred cCCCCCceEEE
Confidence 55666554433
No 207
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=20.65 E-value=1.4e+02 Score=22.29 Aligned_cols=42 Identities=19% Similarity=0.400 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHH--hCCCCCCCChHHHHHHHHHHHHHhhhcccc
Q 013163 103 ASEIKKAYYGLAKK--LHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146 (448)
Q Consensus 103 ~~eIk~ayr~la~~--~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 146 (448)
+.-+.+.+.+++.. -||...- |.+-+.+.++..||..|.+|.
T Consensus 14 D~Rl~~Rl~~l~~~la~~p~~Si--p~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 14 DKRLTRRLVKLAESLAEKPGASI--PQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp SHHHHHHHHHHHHHHHHTTTS-H--HHHTT-HHHHHHHHHHHT-TT
T ss_pred cchHHHHHHHHHHHHHHCCCCcc--chhccCHHHHHHHHHhhcCCC
Confidence 34467777888664 4787753 778788999999999998874
No 208
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=20.22 E-value=1.1e+02 Score=25.21 Aligned_cols=53 Identities=21% Similarity=0.499 Sum_probs=33.9
Q ss_pred cCCCCCCCH-HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccc-cccc
Q 013163 95 LGVNKNATA-SEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYD-QVGH 156 (448)
Q Consensus 95 Lgv~~~a~~-~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd-~~g~ 156 (448)
-|++++... .+|-+.++.+...+++. ++ +.+..+.+.| +.||.-++.|| .+++
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~~----~~---~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTGG----DP---ELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS-------H---HHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 366776544 66778888888888772 22 3677788888 67788888888 5554
Done!