Query 013164
Match_columns 448
No_of_seqs 153 out of 247
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:03:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 2E-102 4E-107 791.7 35.1 396 1-408 37-442 (447)
2 PF04111 APG6: Autophagy prote 100.0 8.2E-98 2E-102 748.7 25.0 304 100-411 1-313 (314)
3 PF10186 Atg14: UV radiation r 99.4 5.6E-11 1.2E-15 116.5 26.1 245 98-345 10-273 (302)
4 KOG2751 Beclin-like protein [S 99.0 1.2E-09 2.6E-14 113.4 11.4 277 77-418 77-398 (447)
5 KOG2896 UV radiation resistanc 98.6 7.9E-06 1.7E-10 84.1 22.3 150 182-346 136-310 (377)
6 PF04111 APG6: Autophagy prote 97.4 0.062 1.4E-06 55.1 22.9 213 121-350 42-311 (314)
7 COG1579 Zn-ribbon protein, pos 97.0 0.03 6.4E-07 55.5 15.8 126 108-233 10-138 (239)
8 KOG0250 DNA repair protein RAD 96.8 0.065 1.4E-06 62.2 18.8 131 105-235 327-466 (1074)
9 TIGR02169 SMC_prok_A chromosom 96.1 0.19 4.2E-06 58.1 17.0 69 162-230 433-501 (1164)
10 PF04156 IncA: IncA protein; 95.8 0.58 1.3E-05 43.8 16.1 98 108-211 88-185 (191)
11 COG1196 Smc Chromosome segrega 95.8 0.33 7.2E-06 57.6 17.4 97 171-275 440-540 (1163)
12 PF11932 DUF3450: Protein of u 95.7 0.96 2.1E-05 44.5 18.0 27 232-260 166-192 (251)
13 PRK03918 chromosome segregatio 95.7 0.53 1.1E-05 53.6 18.0 23 195-217 304-326 (880)
14 TIGR02169 SMC_prok_A chromosom 95.6 0.62 1.3E-05 54.1 18.6 13 326-338 534-546 (1164)
15 COG1579 Zn-ribbon protein, pos 95.6 0.81 1.8E-05 45.5 16.7 101 148-260 95-203 (239)
16 PHA02562 46 endonuclease subun 95.4 0.34 7.3E-06 52.3 14.7 35 98-133 283-317 (562)
17 KOG0979 Structural maintenance 95.4 0.9 1.9E-05 52.9 18.3 30 102-132 197-226 (1072)
18 PF04849 HAP1_N: HAP1 N-termin 95.4 1.1 2.4E-05 46.1 17.3 158 77-235 116-306 (306)
19 PRK11637 AmiB activator; Provi 95.3 0.41 8.9E-06 50.6 14.4 74 111-190 43-116 (428)
20 PF08317 Spc7: Spc7 kinetochor 95.1 2.2 4.8E-05 43.8 18.6 28 76-103 79-106 (325)
21 TIGR02168 SMC_prok_B chromosom 95.0 1.3 2.8E-05 51.2 18.5 11 327-337 533-543 (1179)
22 TIGR02168 SMC_prok_B chromosom 94.9 1.8 3.9E-05 50.1 19.3 21 327-347 1025-1045(1179)
23 PRK11637 AmiB activator; Provi 94.8 2.1 4.6E-05 45.3 18.2 64 154-217 175-238 (428)
24 KOG0250 DNA repair protein RAD 94.8 1.2 2.6E-05 52.3 17.1 118 166-310 390-508 (1074)
25 KOG0996 Structural maintenance 94.8 1 2.2E-05 53.1 16.5 96 157-268 536-633 (1293)
26 COG4942 Membrane-bound metallo 94.4 1.2 2.5E-05 47.7 14.8 85 99-193 26-110 (420)
27 PRK09039 hypothetical protein; 94.4 2.3 5E-05 44.2 16.8 22 384-405 282-303 (343)
28 PF10168 Nup88: Nuclear pore c 94.2 1.8 3.9E-05 49.3 16.9 169 97-288 529-708 (717)
29 smart00787 Spc7 Spc7 kinetocho 94.1 4.4 9.6E-05 41.7 18.0 157 77-233 75-260 (312)
30 TIGR02894 DNA_bind_RsfA transc 94.0 1 2.2E-05 42.3 11.9 18 108-125 54-71 (161)
31 PF07888 CALCOCO1: Calcium bin 94.0 2.9 6.3E-05 46.2 17.2 23 113-135 141-163 (546)
32 PF00261 Tropomyosin: Tropomyo 93.9 3 6.4E-05 40.9 15.7 80 154-233 125-204 (237)
33 PRK03918 chromosome segregatio 93.9 2.3 5E-05 48.5 17.1 8 93-100 133-140 (880)
34 PF04156 IncA: IncA protein; 93.8 5.5 0.00012 37.2 16.9 66 112-183 85-150 (191)
35 KOG0994 Extracellular matrix g 93.8 2.3 4.9E-05 50.4 16.5 80 163-245 1225-1307(1758)
36 PF13851 GAS: Growth-arrest sp 93.8 6.7 0.00015 37.9 17.6 27 109-135 28-54 (201)
37 PRK02224 chromosome segregatio 93.7 2.5 5.5E-05 48.4 17.2 7 302-308 754-760 (880)
38 KOG4360 Uncharacterized coiled 93.7 3 6.6E-05 45.6 16.3 98 149-246 219-316 (596)
39 PHA02562 46 endonuclease subun 93.6 1.6 3.4E-05 47.2 14.5 24 113-136 186-209 (562)
40 COG1196 Smc Chromosome segrega 93.6 3.4 7.4E-05 49.4 18.4 30 102-132 188-217 (1163)
41 PRK02224 chromosome segregatio 93.5 1.9 4.1E-05 49.4 15.7 28 207-234 594-621 (880)
42 PF07888 CALCOCO1: Calcium bin 93.3 5.2 0.00011 44.3 17.8 26 208-233 286-311 (546)
43 PF00261 Tropomyosin: Tropomyo 93.3 8.5 0.00018 37.7 17.8 83 149-231 127-209 (237)
44 PRK10884 SH3 domain-containing 93.1 2.5 5.3E-05 41.2 13.5 81 108-197 93-173 (206)
45 COG2433 Uncharacterized conser 93.1 4.1 9E-05 45.4 16.5 89 148-236 421-512 (652)
46 TIGR01843 type_I_hlyD type I s 93.1 3.7 8E-05 42.2 15.7 47 212-259 246-292 (423)
47 PRK04863 mukB cell division pr 93.1 3.7 8E-05 50.4 17.7 9 440-448 769-777 (1486)
48 KOG0995 Centromere-associated 92.9 6.7 0.00015 43.4 17.7 12 109-120 222-233 (581)
49 COG4026 Uncharacterized protei 92.9 0.66 1.4E-05 45.9 9.1 73 146-218 139-211 (290)
50 PF10473 CENP-F_leu_zip: Leuci 92.8 7.8 0.00017 35.7 16.1 46 148-193 58-103 (140)
51 PF10146 zf-C4H2: Zinc finger- 92.8 4.1 9E-05 40.3 14.8 12 333-344 194-205 (230)
52 TIGR01843 type_I_hlyD type I s 92.8 9.6 0.00021 39.2 18.2 23 111-133 84-106 (423)
53 PF10211 Ax_dynein_light: Axon 92.7 7 0.00015 37.4 15.8 67 158-230 122-188 (189)
54 COG4372 Uncharacterized protei 92.6 6.3 0.00014 42.0 16.3 30 160-189 148-177 (499)
55 PF05266 DUF724: Protein of un 92.5 9.4 0.0002 36.7 16.4 55 168-222 129-183 (190)
56 PRK04778 septation ring format 92.5 3.4 7.3E-05 45.6 15.2 55 77-134 254-312 (569)
57 PF08317 Spc7: Spc7 kinetochor 92.5 9.3 0.0002 39.3 17.5 29 107-135 148-176 (325)
58 KOG0243 Kinesin-like protein [ 92.2 6.5 0.00014 46.4 17.3 133 90-222 420-556 (1041)
59 PF15619 Lebercilin: Ciliary p 92.1 7.9 0.00017 37.3 15.4 14 113-126 24-37 (194)
60 TIGR01000 bacteriocin_acc bact 92.1 5.9 0.00013 42.3 16.1 25 112-136 176-200 (457)
61 KOG0995 Centromere-associated 91.9 13 0.00029 41.2 18.5 32 107-138 258-289 (581)
62 KOG0977 Nuclear envelope prote 91.9 9 0.00019 42.5 17.3 17 74-90 65-81 (546)
63 PF15035 Rootletin: Ciliary ro 91.8 11 0.00023 36.1 15.8 82 107-188 15-113 (182)
64 PF12718 Tropomyosin_1: Tropom 91.8 10 0.00022 34.8 15.7 28 204-231 114-141 (143)
65 PRK10884 SH3 domain-containing 91.7 4.3 9.3E-05 39.5 13.2 76 150-235 94-169 (206)
66 PF09789 DUF2353: Uncharacteri 91.7 5.3 0.00012 41.4 14.6 125 106-230 84-228 (319)
67 KOG0999 Microtubule-associated 91.7 7.1 0.00015 43.3 15.9 30 147-176 154-183 (772)
68 PF12325 TMF_TATA_bd: TATA ele 91.7 5.5 0.00012 35.7 12.9 32 107-138 15-46 (120)
69 PF08614 ATG16: Autophagy prot 91.6 1.4 2.9E-05 42.0 9.6 24 110-133 76-99 (194)
70 COG4985 ABC-type phosphate tra 91.4 5.9 0.00013 39.6 13.8 103 145-274 160-270 (289)
71 PRK04863 mukB cell division pr 91.4 4.8 0.0001 49.5 16.0 37 198-234 442-478 (1486)
72 PF09755 DUF2046: Uncharacteri 91.4 11 0.00025 38.9 16.4 57 161-217 140-197 (310)
73 PF06120 Phage_HK97_TLTM: Tail 91.2 8.1 0.00017 39.8 15.2 73 112-185 38-110 (301)
74 PF10146 zf-C4H2: Zinc finger- 91.2 13 0.00028 36.9 16.1 51 164-214 40-90 (230)
75 PF15285 BH3: Beclin-1 BH3 dom 91.2 0.084 1.8E-06 34.8 0.6 18 77-94 8-25 (25)
76 TIGR03185 DNA_S_dndD DNA sulfu 91.2 7.1 0.00015 43.7 16.1 67 113-187 181-247 (650)
77 KOG1962 B-cell receptor-associ 90.9 5.6 0.00012 39.1 13.1 23 161-183 156-178 (216)
78 PF06156 DUF972: Protein of un 90.9 0.98 2.1E-05 39.7 7.2 15 236-251 81-95 (107)
79 PF00038 Filament: Intermediat 90.8 19 0.00042 36.1 19.3 75 154-231 214-288 (312)
80 PF10168 Nup88: Nuclear pore c 90.8 22 0.00048 40.8 19.6 14 81-94 538-551 (717)
81 PF10481 CENP-F_N: Cenp-F N-te 90.8 14 0.00031 37.7 16.0 113 110-239 20-136 (307)
82 PF09726 Macoilin: Transmembra 90.7 5.4 0.00012 45.4 14.7 26 164-189 546-571 (697)
83 TIGR00606 rad50 rad50. This fa 90.6 5.6 0.00012 48.2 15.6 6 252-257 1159-1164(1311)
84 KOG0996 Structural maintenance 90.6 12 0.00026 44.7 17.4 20 326-345 1134-1153(1293)
85 KOG0964 Structural maintenance 90.6 5.8 0.00012 46.5 14.6 174 145-337 414-618 (1200)
86 PRK04778 septation ring format 90.5 9 0.0002 42.3 15.9 71 150-220 356-426 (569)
87 PF09755 DUF2046: Uncharacteri 90.4 22 0.00048 36.9 17.4 58 109-166 136-202 (310)
88 PF12325 TMF_TATA_bd: TATA ele 90.4 13 0.00028 33.4 15.5 43 147-189 21-63 (120)
89 TIGR00606 rad50 rad50. This fa 90.1 16 0.00035 44.4 18.7 38 145-182 825-862 (1311)
90 KOG0161 Myosin class II heavy 90.0 12 0.00026 47.2 17.6 15 328-342 1238-1252(1930)
91 PF10212 TTKRSYEDQ: Predicted 90.0 9.6 0.00021 41.9 15.2 78 154-234 439-516 (518)
92 PF00038 Filament: Intermediat 90.0 22 0.00049 35.6 17.7 38 196-233 101-138 (312)
93 PF10498 IFT57: Intra-flagella 89.8 12 0.00027 39.3 15.5 77 98-190 217-293 (359)
94 PF07106 TBPIP: Tat binding pr 89.8 4.1 8.8E-05 37.8 10.8 70 102-171 66-138 (169)
95 KOG4673 Transcription factor T 89.6 20 0.00042 40.9 17.3 51 86-138 389-439 (961)
96 KOG0161 Myosin class II heavy 89.6 19 0.0004 45.5 18.8 25 166-190 953-977 (1930)
97 PF09789 DUF2353: Uncharacteri 89.5 25 0.00053 36.7 17.0 167 112-288 13-223 (319)
98 PRK09039 hypothetical protein; 89.5 19 0.00041 37.5 16.5 21 109-129 82-102 (343)
99 COG2433 Uncharacterized conser 89.5 6.9 0.00015 43.7 13.7 78 148-225 428-508 (652)
100 TIGR02977 phageshock_pspA phag 89.5 18 0.0004 35.0 15.4 45 83-129 3-52 (219)
101 PRK01156 chromosome segregatio 89.5 13 0.00028 42.9 16.8 34 200-233 411-444 (895)
102 PF08614 ATG16: Autophagy prot 89.4 9.6 0.00021 36.2 13.2 10 207-216 167-176 (194)
103 PRK01156 chromosome segregatio 89.4 14 0.00031 42.6 17.0 19 102-120 167-185 (895)
104 PF09726 Macoilin: Transmembra 89.3 21 0.00045 40.8 17.8 31 107-137 417-447 (697)
105 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.0 17 0.00036 32.6 16.9 34 198-231 98-131 (132)
106 COG4372 Uncharacterized protei 88.8 27 0.00058 37.5 16.8 14 397-410 453-466 (499)
107 KOG1853 LIS1-interacting prote 88.6 21 0.00045 36.3 15.1 81 155-238 51-134 (333)
108 PF05384 DegS: Sensor protein 88.6 22 0.00047 33.5 16.1 65 147-211 46-118 (159)
109 KOG2264 Exostosin EXT1L [Signa 88.4 4.2 9.2E-05 45.1 11.1 84 161-258 91-182 (907)
110 KOG2391 Vacuolar sorting prote 88.4 36 0.00078 35.8 19.0 55 121-181 224-278 (365)
111 KOG2072 Translation initiation 88.1 18 0.00039 42.0 16.0 146 84-233 521-698 (988)
112 TIGR02680 conserved hypothetic 88.1 20 0.00044 43.8 17.7 34 378-411 608-641 (1353)
113 TIGR03007 pepcterm_ChnLen poly 88.1 29 0.00062 37.2 17.2 35 199-233 349-383 (498)
114 COG5185 HEC1 Protein involved 88.0 27 0.00058 38.3 16.5 26 74-104 153-178 (622)
115 PF09730 BicD: Microtubule-ass 87.9 30 0.00064 39.8 17.7 71 112-182 38-116 (717)
116 KOG0288 WD40 repeat protein Ti 87.6 18 0.00039 38.9 14.8 107 112-218 10-117 (459)
117 PF12718 Tropomyosin_1: Tropom 87.6 22 0.00049 32.5 16.8 7 114-120 6-12 (143)
118 KOG0999 Microtubule-associated 87.6 21 0.00045 39.8 15.6 63 151-213 109-185 (772)
119 PF04012 PspA_IM30: PspA/IM30 87.4 28 0.0006 33.4 18.3 52 177-228 98-149 (221)
120 KOG0804 Cytoplasmic Zn-finger 87.2 28 0.00061 37.8 16.1 18 212-229 428-445 (493)
121 PF00769 ERM: Ezrin/radixin/mo 87.2 16 0.00035 36.3 13.6 38 155-192 60-97 (246)
122 TIGR03752 conj_TIGR03752 integ 87.0 8.7 0.00019 41.8 12.4 72 160-231 70-142 (472)
123 KOG0933 Structural maintenance 86.9 22 0.00049 42.0 16.1 42 195-236 896-937 (1174)
124 KOG1962 B-cell receptor-associ 86.7 11 0.00023 37.2 11.8 58 149-206 151-208 (216)
125 PRK09841 cryptic autophosphory 86.5 37 0.0008 38.7 17.8 34 104-137 263-296 (726)
126 KOG0982 Centrosomal protein Nu 86.5 24 0.00053 38.1 15.0 29 207-235 362-390 (502)
127 PF15070 GOLGA2L5: Putative go 86.5 27 0.00059 39.4 16.3 19 391-409 488-506 (617)
128 TIGR03185 DNA_S_dndD DNA sulfu 86.4 48 0.001 37.2 18.4 43 148-190 427-469 (650)
129 KOG0980 Actin-binding protein 86.3 54 0.0012 38.5 18.5 81 154-234 436-516 (980)
130 KOG0933 Structural maintenance 86.2 29 0.00064 41.1 16.5 31 361-395 1053-1083(1174)
131 PRK00409 recombination and DNA 85.9 15 0.00033 42.4 14.4 22 72-93 386-407 (782)
132 TIGR01010 BexC_CtrB_KpsE polys 85.8 46 0.001 34.3 19.3 164 107-281 169-345 (362)
133 PF06160 EzrA: Septation ring 85.6 29 0.00064 38.4 16.0 181 102-287 276-487 (560)
134 PRK11519 tyrosine kinase; Prov 85.3 42 0.00092 38.2 17.5 33 200-232 365-397 (719)
135 COG4942 Membrane-bound metallo 85.3 18 0.00038 39.0 13.5 11 249-259 152-162 (420)
136 PF05700 BCAS2: Breast carcino 85.2 6.5 0.00014 38.3 9.6 45 147-191 173-217 (221)
137 COG5185 HEC1 Protein involved 85.2 65 0.0014 35.5 17.7 51 154-204 335-388 (622)
138 PF05266 DUF724: Protein of un 85.1 37 0.00081 32.7 15.6 112 116-227 63-181 (190)
139 PF05701 WEMBL: Weak chloropla 85.0 52 0.0011 36.2 17.5 15 268-282 421-435 (522)
140 TIGR01069 mutS2 MutS2 family p 85.0 13 0.00028 42.8 13.3 45 151-195 517-561 (771)
141 TIGR02680 conserved hypothetic 84.9 31 0.00067 42.3 17.0 10 82-91 180-189 (1353)
142 KOG0977 Nuclear envelope prote 84.6 39 0.00086 37.6 16.1 20 113-132 111-130 (546)
143 KOG4438 Centromere-associated 84.4 45 0.00097 36.1 15.8 74 196-288 214-288 (446)
144 PF11932 DUF3450: Protein of u 84.3 35 0.00076 33.6 14.5 8 361-368 240-247 (251)
145 PF10186 Atg14: UV radiation r 84.2 44 0.00096 32.7 18.2 39 152-190 59-97 (302)
146 TIGR02894 DNA_bind_RsfA transc 84.1 19 0.00041 34.1 11.6 31 159-189 100-130 (161)
147 KOG0980 Actin-binding protein 83.9 47 0.001 38.9 16.6 10 252-261 563-572 (980)
148 KOG1899 LAR transmembrane tyro 83.9 21 0.00044 40.4 13.5 12 298-309 330-341 (861)
149 PRK00409 recombination and DNA 83.6 23 0.00049 41.0 14.5 38 152-189 523-560 (782)
150 PF00769 ERM: Ezrin/radixin/mo 83.6 50 0.0011 32.9 16.9 76 154-229 45-120 (246)
151 PF10267 Tmemb_cc2: Predicted 83.5 27 0.00058 37.4 13.9 31 107-137 211-241 (395)
152 PF14662 CCDC155: Coiled-coil 83.5 46 0.00099 32.4 15.1 44 146-189 71-114 (193)
153 PF11414 Suppressor_APC: Adeno 83.5 17 0.00037 30.7 10.1 57 147-203 5-63 (84)
154 PF05667 DUF812: Protein of un 83.3 61 0.0013 36.5 17.2 94 175-280 424-517 (594)
155 PF12329 TMF_DNA_bd: TATA elem 83.3 20 0.00044 29.3 10.3 26 161-186 17-42 (74)
156 PF06005 DUF904: Protein of un 83.1 24 0.00053 28.9 11.7 41 152-192 7-47 (72)
157 KOG0612 Rho-associated, coiled 82.8 35 0.00075 41.2 15.5 15 118-132 511-525 (1317)
158 KOG3647 Predicted coiled-coil 82.5 55 0.0012 33.6 14.8 31 75-105 53-83 (338)
159 PRK10698 phage shock protein P 82.5 52 0.0011 32.3 18.2 51 177-227 99-149 (222)
160 TIGR03752 conj_TIGR03752 integ 82.5 15 0.00032 40.1 11.7 74 159-232 62-136 (472)
161 KOG0804 Cytoplasmic Zn-finger 82.5 47 0.001 36.2 15.1 32 189-220 419-450 (493)
162 PRK09841 cryptic autophosphory 82.3 50 0.0011 37.7 16.5 35 199-233 364-398 (726)
163 PF09730 BicD: Microtubule-ass 82.2 56 0.0012 37.6 16.6 113 111-224 30-147 (717)
164 KOG4674 Uncharacterized conser 82.1 66 0.0014 40.6 17.9 121 109-232 130-251 (1822)
165 PF04849 HAP1_N: HAP1 N-termin 82.0 63 0.0014 33.5 15.5 84 145-228 163-264 (306)
166 PF11180 DUF2968: Protein of u 81.8 50 0.0011 32.1 13.7 95 126-234 89-183 (192)
167 TIGR01069 mutS2 MutS2 family p 81.7 32 0.00069 39.8 14.7 19 74-92 383-401 (771)
168 KOG1029 Endocytic adaptor prot 81.7 38 0.00083 39.3 14.7 9 250-258 631-639 (1118)
169 TIGR02231 conserved hypothetic 81.6 26 0.00057 38.1 13.4 34 200-233 140-173 (525)
170 KOG4673 Transcription factor T 81.4 57 0.0012 37.4 15.8 22 263-284 656-683 (961)
171 TIGR02338 gimC_beta prefoldin, 81.4 25 0.00055 30.5 10.8 35 152-186 70-104 (110)
172 TIGR01000 bacteriocin_acc bact 81.3 81 0.0018 33.7 17.8 27 207-233 238-264 (457)
173 KOG4360 Uncharacterized coiled 81.3 52 0.0011 36.5 15.1 98 121-218 194-302 (596)
174 TIGR03319 YmdA_YtgF conserved 81.2 44 0.00095 36.9 15.0 18 241-259 208-225 (514)
175 KOG0971 Microtubule-associated 81.1 1.3E+02 0.0028 35.8 21.0 20 269-288 439-458 (1243)
176 KOG0964 Structural maintenance 80.8 43 0.00093 39.7 15.0 29 196-224 326-354 (1200)
177 TIGR02231 conserved hypothetic 80.8 19 0.00041 39.2 12.0 43 147-189 129-171 (525)
178 PRK11281 hypothetical protein; 80.7 46 0.00099 40.2 15.8 26 111-136 83-108 (1113)
179 PRK10361 DNA recombination pro 80.6 96 0.0021 34.1 17.6 30 154-183 90-119 (475)
180 PF06005 DUF904: Protein of un 80.6 30 0.00066 28.3 11.5 34 157-190 19-52 (72)
181 cd00632 Prefoldin_beta Prefold 80.5 30 0.00066 29.6 10.9 37 152-188 66-102 (105)
182 PRK13169 DNA replication intia 80.4 6.8 0.00015 34.7 6.9 15 236-251 78-92 (110)
183 PF14662 CCDC155: Coiled-coil 80.3 60 0.0013 31.6 18.1 42 148-189 87-128 (193)
184 PF05278 PEARLI-4: Arabidopsis 80.1 28 0.00061 35.4 12.0 151 76-233 94-263 (269)
185 PRK12704 phosphodiesterase; Pr 80.1 50 0.0011 36.5 15.0 12 241-252 214-225 (520)
186 cd07674 F-BAR_FCHO1 The F-BAR 80.1 67 0.0014 32.0 16.8 18 252-269 244-261 (261)
187 PF14197 Cep57_CLD_2: Centroso 79.8 24 0.00051 28.7 9.3 31 107-137 4-34 (69)
188 KOG0239 Kinesin (KAR3 subfamil 79.5 71 0.0015 36.5 16.2 61 154-214 232-292 (670)
189 PF07111 HCR: Alpha helical co 79.5 1.2E+02 0.0025 35.0 17.5 85 148-232 175-276 (739)
190 TIGR00570 cdk7 CDK-activating 79.5 43 0.00094 34.8 13.3 11 126-136 94-104 (309)
191 PF10473 CENP-F_leu_zip: Leuci 79.4 52 0.0011 30.4 17.5 33 150-182 53-85 (140)
192 PF05701 WEMBL: Weak chloropla 79.3 95 0.0021 34.2 16.8 29 203-231 412-440 (522)
193 PF03961 DUF342: Protein of un 79.1 17 0.00037 38.9 10.9 78 104-181 330-407 (451)
194 PF07106 TBPIP: Tat binding pr 79.0 12 0.00026 34.6 8.6 29 154-182 77-105 (169)
195 PRK00106 hypothetical protein; 78.8 76 0.0016 35.4 15.8 18 241-259 229-246 (535)
196 KOG0243 Kinesin-like protein [ 78.6 1.3E+02 0.0027 36.2 18.1 20 107-126 403-422 (1041)
197 PRK08032 fliD flagellar cappin 78.3 8.9 0.00019 41.4 8.4 50 168-220 411-460 (462)
198 PF13851 GAS: Growth-arrest sp 78.1 68 0.0015 31.0 17.3 76 150-225 49-134 (201)
199 PF12128 DUF3584: Protein of u 77.9 1E+02 0.0023 37.3 17.9 27 371-397 1026-1053(1201)
200 KOG1937 Uncharacterized conser 77.9 1.1E+02 0.0025 33.4 17.3 69 162-230 344-428 (521)
201 KOG4403 Cell surface glycoprot 77.9 63 0.0014 35.2 14.2 66 206-282 348-414 (575)
202 PF10234 Cluap1: Clusterin-ass 77.8 86 0.0019 32.0 14.7 34 150-183 184-217 (267)
203 PF14197 Cep57_CLD_2: Centroso 77.8 36 0.00079 27.6 10.4 35 198-232 33-67 (69)
204 PF01920 Prefoldin_2: Prefoldi 77.7 14 0.00031 30.8 8.0 75 112-186 16-99 (106)
205 PF15066 CAGE1: Cancer-associa 77.7 1.2E+02 0.0025 33.5 16.2 39 189-227 487-525 (527)
206 cd07593 BAR_MUG137_fungi The B 77.7 46 0.001 32.7 12.5 42 159-203 145-186 (215)
207 PF05667 DUF812: Protein of un 77.6 63 0.0014 36.4 15.0 26 110-135 330-355 (594)
208 KOG1899 LAR transmembrane tyro 77.4 25 0.00054 39.7 11.5 25 166-190 170-194 (861)
209 COG1382 GimC Prefoldin, chaper 77.4 47 0.001 30.0 11.3 25 111-135 16-40 (119)
210 COG4026 Uncharacterized protei 77.3 68 0.0015 32.2 13.3 10 84-93 75-84 (290)
211 PF12128 DUF3584: Protein of u 77.3 95 0.0021 37.6 17.3 11 371-381 581-591 (1201)
212 TIGR03007 pepcterm_ChnLen poly 77.2 81 0.0018 33.8 15.3 28 108-135 161-188 (498)
213 PF02403 Seryl_tRNA_N: Seryl-t 77.1 36 0.00079 29.0 10.4 38 147-184 27-64 (108)
214 COG1730 GIM5 Predicted prefold 76.8 54 0.0012 30.4 12.0 84 107-190 19-135 (145)
215 KOG0982 Centrosomal protein Nu 76.6 94 0.002 33.8 15.0 26 161-186 323-348 (502)
216 TIGR01005 eps_transp_fam exopo 76.6 1.4E+02 0.0031 33.9 20.6 19 108-126 288-306 (754)
217 TIGR01005 eps_transp_fam exopo 76.5 67 0.0015 36.5 15.1 21 109-129 202-222 (754)
218 PRK03947 prefoldin subunit alp 76.3 42 0.0009 30.0 11.0 44 147-190 92-135 (140)
219 PF08826 DMPK_coil: DMPK coile 76.3 17 0.00038 29.0 7.4 42 148-189 17-58 (61)
220 PF08647 BRE1: BRE1 E3 ubiquit 76.1 48 0.0011 28.2 11.5 64 115-184 3-66 (96)
221 PRK06798 fliD flagellar cappin 76.1 11 0.00024 40.6 8.3 52 164-218 380-431 (440)
222 PF03961 DUF342: Protein of un 75.7 16 0.00034 39.2 9.4 74 157-231 335-408 (451)
223 PF06160 EzrA: Septation ring 75.6 1.3E+02 0.0028 33.4 16.7 151 77-234 166-335 (560)
224 TIGR00634 recN DNA repair prot 75.5 1.1E+02 0.0025 33.7 16.2 92 149-245 308-402 (563)
225 KOG4643 Uncharacterized coiled 75.1 1.4E+02 0.0031 35.7 17.0 13 113-125 413-425 (1195)
226 PF03962 Mnd1: Mnd1 family; I 74.8 37 0.0008 32.5 10.7 26 86-111 16-41 (188)
227 KOG4460 Nuclear pore complex, 74.7 1.5E+02 0.0033 33.3 17.7 17 98-114 553-569 (741)
228 PF03962 Mnd1: Mnd1 family; I 74.6 53 0.0011 31.5 11.7 67 109-182 63-129 (188)
229 COG0419 SbcC ATPase involved i 74.5 1.7E+02 0.0038 34.2 18.1 29 104-132 167-195 (908)
230 PF10234 Cluap1: Clusterin-ass 74.4 66 0.0014 32.7 12.9 27 154-180 174-200 (267)
231 PRK09343 prefoldin subunit bet 74.2 52 0.0011 29.2 10.9 32 154-185 76-107 (121)
232 PF09787 Golgin_A5: Golgin sub 73.7 1.5E+02 0.0031 32.6 16.6 10 266-275 386-395 (511)
233 PF10174 Cast: RIM-binding pro 73.7 1.9E+02 0.004 33.9 17.8 8 161-168 341-348 (775)
234 PRK10929 putative mechanosensi 73.4 1.8E+02 0.0039 35.3 18.0 17 264-280 260-276 (1109)
235 KOG4643 Uncharacterized coiled 73.4 2.1E+02 0.0046 34.4 18.5 15 154-168 434-448 (1195)
236 COG4477 EzrA Negative regulato 73.4 1E+02 0.0022 34.4 14.7 105 174-287 379-490 (570)
237 KOG4809 Rab6 GTPase-interactin 73.1 1.2E+02 0.0026 34.1 15.0 31 394-424 601-631 (654)
238 KOG4572 Predicted DNA-binding 72.0 1.3E+02 0.0029 35.3 15.5 55 190-244 994-1048(1424)
239 COG3879 Uncharacterized protei 71.7 47 0.001 33.5 10.9 50 210-261 137-186 (247)
240 smart00787 Spc7 Spc7 kinetocho 71.2 1.3E+02 0.0029 31.1 17.8 36 197-232 217-252 (312)
241 TIGR02449 conserved hypothetic 71.1 38 0.00083 27.4 8.3 33 154-186 5-37 (65)
242 KOG1029 Endocytic adaptor prot 71.1 1.3E+02 0.0029 35.1 15.3 8 37-44 128-135 (1118)
243 COG1345 FliD Flagellar capping 71.0 15 0.00032 40.2 7.9 54 169-232 428-481 (483)
244 PF05278 PEARLI-4: Arabidopsis 70.9 1.3E+02 0.0028 30.8 19.1 6 126-131 126-131 (269)
245 PF12777 MT: Microtubule-bindi 70.9 16 0.00035 37.8 7.9 16 274-290 311-326 (344)
246 KOG4302 Microtubule-associated 70.9 1.3E+02 0.0027 34.5 15.2 78 154-231 101-193 (660)
247 KOG0993 Rab5 GTPase effector R 70.8 59 0.0013 35.2 11.9 47 144-190 136-182 (542)
248 PF15070 GOLGA2L5: Putative go 70.8 1.3E+02 0.0027 34.2 15.2 15 334-348 421-435 (617)
249 PF11180 DUF2968: Protein of u 70.8 1.1E+02 0.0023 29.9 14.7 57 155-211 125-181 (192)
250 PF10481 CENP-F_N: Cenp-F N-te 70.7 76 0.0016 32.6 12.1 21 212-232 95-115 (307)
251 PF05911 DUF869: Plant protein 70.7 1.8E+02 0.0038 34.0 16.5 37 198-234 148-184 (769)
252 KOG0976 Rho/Rac1-interacting s 70.7 1.7E+02 0.0036 34.6 15.9 50 81-131 228-282 (1265)
253 KOG0972 Huntingtin interacting 70.7 1.1E+02 0.0025 31.8 13.4 44 146-189 256-299 (384)
254 PF15254 CCDC14: Coiled-coil d 70.3 2E+02 0.0043 33.6 16.5 79 153-234 466-544 (861)
255 PRK06800 fliH flagellar assemb 69.8 67 0.0015 31.3 11.0 13 280-292 137-149 (228)
256 KOG2077 JNK/SAPK-associated pr 69.6 73 0.0016 35.9 12.6 108 105-214 293-422 (832)
257 PF15294 Leu_zip: Leucine zipp 69.5 1.2E+02 0.0027 31.0 13.5 81 147-227 130-230 (278)
258 KOG2391 Vacuolar sorting prote 69.4 45 0.00097 35.1 10.5 18 166-183 249-266 (365)
259 PF09738 DUF2051: Double stran 69.4 1.2E+02 0.0026 31.4 13.6 22 327-348 222-243 (302)
260 KOG4460 Nuclear pore complex, 69.3 1.5E+02 0.0033 33.4 14.8 133 89-230 550-687 (741)
261 PF05529 Bap31: B-cell recepto 69.3 30 0.00066 32.6 8.8 35 156-190 154-188 (192)
262 PF15619 Lebercilin: Ciliary p 69.1 1.1E+02 0.0025 29.5 17.9 27 196-222 155-181 (194)
263 KOG0994 Extracellular matrix g 68.8 2.8E+02 0.0061 34.1 17.5 16 77-92 1520-1535(1758)
264 PF09728 Taxilin: Myosin-like 68.8 1.5E+02 0.0032 30.6 15.8 23 322-344 260-282 (309)
265 PF10805 DUF2730: Protein of u 68.8 37 0.00081 29.5 8.5 32 200-231 67-98 (106)
266 KOG0612 Rho-associated, coiled 68.6 2E+02 0.0043 35.2 16.5 8 9-16 345-352 (1317)
267 KOG3800 Predicted E3 ubiquitin 68.5 28 0.0006 35.9 8.6 15 96-110 22-36 (300)
268 PF13514 AAA_27: AAA domain 68.4 1.3E+02 0.0029 36.0 15.6 24 262-285 1018-1041(1111)
269 PRK15422 septal ring assembly 68.2 73 0.0016 26.9 11.0 18 164-181 26-43 (79)
270 PF05911 DUF869: Plant protein 68.1 86 0.0019 36.5 13.4 17 269-285 734-750 (769)
271 PF15290 Syntaphilin: Golgi-lo 68.1 1.5E+02 0.0033 30.6 13.9 75 154-237 106-182 (305)
272 PF05557 MAD: Mitotic checkpoi 68.0 8 0.00017 43.9 5.3 125 107-231 398-536 (722)
273 cd00890 Prefoldin Prefoldin is 68.0 67 0.0015 27.7 10.1 35 152-186 90-124 (129)
274 PF10037 MRP-S27: Mitochondria 67.9 1.7E+02 0.0036 31.8 14.9 31 175-205 370-400 (429)
275 KOG4674 Uncharacterized conser 67.7 1.6E+02 0.0036 37.3 16.2 23 112-134 63-85 (1822)
276 KOG1103 Predicted coiled-coil 67.6 1E+02 0.0023 32.8 12.7 35 158-192 240-274 (561)
277 cd00584 Prefoldin_alpha Prefol 67.6 81 0.0018 27.6 10.6 28 108-135 13-40 (129)
278 PF06248 Zw10: Centromere/kine 67.5 1.3E+02 0.0027 33.5 14.4 35 101-135 7-46 (593)
279 PRK10869 recombination and rep 67.5 2.1E+02 0.0045 31.8 17.6 78 164-246 318-398 (553)
280 PRK11578 macrolide transporter 67.5 1.1E+02 0.0023 31.6 13.1 44 210-254 156-199 (370)
281 KOG0971 Microtubule-associated 67.4 2.8E+02 0.006 33.3 17.9 17 390-406 837-853 (1243)
282 PF05276 SH3BP5: SH3 domain-bi 67.4 1.4E+02 0.0031 29.9 14.2 38 195-232 181-218 (239)
283 PF10779 XhlA: Haemolysin XhlA 67.3 57 0.0012 26.2 8.8 53 146-198 3-55 (71)
284 PRK13182 racA polar chromosome 67.3 52 0.0011 31.3 9.8 69 161-238 83-151 (175)
285 KOG2129 Uncharacterized conser 67.3 48 0.001 35.9 10.3 65 110-174 210-278 (552)
286 PF10174 Cast: RIM-binding pro 67.2 2.5E+02 0.0055 32.8 17.5 36 196-231 470-505 (775)
287 TIGR03319 YmdA_YtgF conserved 67.2 1E+02 0.0022 34.0 13.4 37 161-197 92-128 (514)
288 PF05010 TACC: Transforming ac 67.0 1.3E+02 0.0029 29.4 17.6 29 153-181 73-101 (207)
289 PF08172 CASP_C: CASP C termin 67.0 31 0.00067 34.6 8.6 38 199-236 87-124 (248)
290 cd07666 BAR_SNX7 The Bin/Amphi 66.9 1.5E+02 0.0031 29.8 17.7 113 102-230 118-231 (243)
291 PF04012 PspA_IM30: PspA/IM30 66.6 1.2E+02 0.0027 28.9 14.6 46 182-227 96-141 (221)
292 PRK06664 fliD flagellar hook-a 66.6 19 0.00041 40.9 7.8 52 165-219 602-653 (661)
293 PRK07737 fliD flagellar cappin 66.5 24 0.00052 38.6 8.4 48 167-217 445-492 (501)
294 PF07200 Mod_r: Modifier of ru 66.4 1E+02 0.0022 27.8 14.2 67 116-189 8-74 (150)
295 PLN02678 seryl-tRNA synthetase 66.3 56 0.0012 35.5 11.0 91 147-246 31-121 (448)
296 KOG0240 Kinesin (SMY1 subfamil 66.2 2.3E+02 0.005 32.0 18.6 64 155-218 413-483 (607)
297 PF02841 GBP_C: Guanylate-bind 66.0 1.3E+02 0.0028 30.4 13.1 31 103-133 150-184 (297)
298 PRK13729 conjugal transfer pil 65.4 21 0.00046 39.0 7.5 14 296-309 211-224 (475)
299 KOG0979 Structural maintenance 65.0 2.2E+02 0.0047 34.2 15.8 23 114-136 201-223 (1072)
300 COG3206 GumC Uncharacterized p 65.0 1.7E+02 0.0037 31.3 14.3 20 109-128 286-305 (458)
301 COG4717 Uncharacterized conser 64.9 2.3E+02 0.005 33.6 15.7 97 157-253 775-879 (984)
302 KOG3119 Basic region leucine z 64.8 25 0.00054 35.5 7.6 54 148-201 207-260 (269)
303 COG1340 Uncharacterized archae 64.7 1.8E+02 0.0039 30.1 16.5 78 149-226 165-242 (294)
304 PRK03947 prefoldin subunit alp 64.7 1E+02 0.0023 27.4 13.0 23 114-136 5-27 (140)
305 PF09763 Sec3_C: Exocyst compl 64.6 1.1E+02 0.0024 34.6 13.5 111 106-236 3-113 (701)
306 KOG4593 Mitotic checkpoint pro 64.5 2.5E+02 0.0054 32.4 15.7 25 113-137 424-448 (716)
307 PF14817 HAUS5: HAUS augmin-li 63.9 1.7E+02 0.0036 33.4 14.5 47 159-205 82-128 (632)
308 KOG0163 Myosin class VI heavy 63.8 2.2E+02 0.0049 33.4 15.1 11 125-135 903-913 (1259)
309 PF12761 End3: Actin cytoskele 63.8 1.3E+02 0.0028 29.3 11.9 22 207-228 162-183 (195)
310 PF05529 Bap31: B-cell recepto 63.6 53 0.0012 30.9 9.2 22 203-224 166-187 (192)
311 PF07061 Swi5: Swi5; InterPro 63.4 28 0.0006 29.3 6.4 10 195-204 43-52 (83)
312 PF02388 FemAB: FemAB family; 63.2 23 0.00051 37.5 7.4 51 206-256 274-329 (406)
313 TIGR02977 phageshock_pspA phag 63.1 1.5E+02 0.0033 28.7 14.6 51 177-227 99-149 (219)
314 PF11365 DUF3166: Protein of u 62.9 58 0.0013 28.4 8.4 89 144-235 3-92 (96)
315 COG3074 Uncharacterized protei 62.8 89 0.0019 25.9 10.7 6 194-199 62-67 (79)
316 TIGR00634 recN DNA repair prot 62.7 2.1E+02 0.0045 31.7 14.8 11 333-343 480-490 (563)
317 KOG1853 LIS1-interacting prote 62.7 1.9E+02 0.0041 29.7 17.2 20 164-183 99-118 (333)
318 PF15397 DUF4618: Domain of un 62.4 1.8E+02 0.004 29.5 17.7 43 147-189 65-107 (258)
319 COG3074 Uncharacterized protei 62.4 90 0.002 25.9 10.5 11 209-219 64-74 (79)
320 KOG0018 Structural maintenance 61.8 3.6E+02 0.0078 32.7 17.0 9 387-395 592-600 (1141)
321 KOG4005 Transcription factor X 61.7 89 0.0019 31.6 10.4 22 326-347 210-231 (292)
322 COG4477 EzrA Negative regulato 61.7 2.7E+02 0.0059 31.2 16.6 56 77-132 253-309 (570)
323 PF15188 CCDC-167: Coiled-coil 61.5 30 0.00066 29.4 6.3 24 212-235 43-66 (85)
324 TIGR02473 flagell_FliJ flagell 61.2 1.1E+02 0.0024 26.6 15.2 89 111-202 30-121 (141)
325 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.1 1.2E+02 0.0027 27.0 16.5 69 152-223 62-130 (132)
326 PF13514 AAA_27: AAA domain 61.1 3.6E+02 0.0078 32.4 18.0 27 110-136 745-771 (1111)
327 PRK08724 fliD flagellar cappin 61.0 41 0.0009 38.4 9.1 50 166-218 620-669 (673)
328 PF05130 FlgN: FlgN protein; 60.9 1.1E+02 0.0023 26.2 10.3 60 119-180 9-68 (143)
329 PF10211 Ax_dynein_light: Axon 60.9 1.6E+02 0.0034 28.2 14.6 55 152-206 123-178 (189)
330 PF07058 Myosin_HC-like: Myosi 60.8 81 0.0018 32.9 10.3 21 110-130 2-22 (351)
331 PF02996 Prefoldin: Prefoldin 60.8 49 0.0011 28.4 7.8 80 110-189 5-117 (120)
332 KOG4677 Golgi integral membran 60.7 1.4E+02 0.003 32.8 12.4 104 148-261 308-423 (554)
333 PF14257 DUF4349: Domain of un 60.5 56 0.0012 32.2 9.1 48 84-132 107-156 (262)
334 cd07611 BAR_Amphiphysin_I_II T 60.5 1.8E+02 0.0039 28.7 14.3 108 104-211 75-206 (211)
335 PF12999 PRKCSH-like: Glucosid 60.4 33 0.00071 32.9 7.1 15 94-108 96-110 (176)
336 PF02403 Seryl_tRNA_N: Seryl-t 60.3 87 0.0019 26.6 9.2 20 113-132 34-53 (108)
337 PF09304 Cortex-I_coil: Cortex 60.1 1.3E+02 0.0027 26.8 15.3 20 156-175 51-70 (107)
338 TIGR03017 EpsF chain length de 59.7 2.3E+02 0.005 29.8 15.2 31 107-137 170-200 (444)
339 KOG1760 Molecular chaperone Pr 59.7 1.3E+02 0.0027 27.6 10.2 75 111-185 33-117 (131)
340 PF11684 DUF3280: Protein of u 59.4 7.4 0.00016 35.8 2.5 28 371-398 110-137 (140)
341 KOG0962 DNA repair protein RAD 59.4 4E+02 0.0086 33.0 17.0 27 145-171 822-848 (1294)
342 KOG4571 Activating transcripti 59.3 37 0.00079 35.0 7.6 38 155-192 247-284 (294)
343 PRK05431 seryl-tRNA synthetase 59.3 86 0.0019 33.6 10.8 35 149-183 28-62 (425)
344 TIGR03017 EpsF chain length de 59.2 2.4E+02 0.0051 29.7 21.5 22 207-228 344-365 (444)
345 KOG3091 Nuclear pore complex, 59.2 1.6E+02 0.0035 32.6 12.7 17 29-45 180-196 (508)
346 PRK06800 fliH flagellar assemb 59.0 1.3E+02 0.0029 29.4 10.8 6 300-305 189-194 (228)
347 PRK00888 ftsB cell division pr 58.8 32 0.0007 30.0 6.3 31 153-183 31-61 (105)
348 TIGR00414 serS seryl-tRNA synt 58.8 93 0.002 33.3 11.0 35 148-182 29-63 (418)
349 PF14257 DUF4349: Domain of un 58.7 1.9E+02 0.0041 28.5 12.7 61 209-278 166-226 (262)
350 KOG4005 Transcription factor X 58.6 2E+02 0.0043 29.2 12.3 16 116-131 60-75 (292)
351 PF10224 DUF2205: Predicted co 58.5 82 0.0018 26.5 8.3 42 158-200 18-59 (80)
352 TIGR03794 NHPM_micro_HlyD NHPM 58.4 2.4E+02 0.0053 29.6 18.0 48 212-260 227-274 (421)
353 PRK10869 recombination and rep 58.4 2.6E+02 0.0057 31.0 14.7 11 365-375 502-512 (553)
354 PRK13729 conjugal transfer pil 58.4 26 0.00057 38.3 6.8 11 212-222 111-121 (475)
355 PF09731 Mitofilin: Mitochondr 58.0 2.9E+02 0.0063 30.4 17.2 11 81-91 225-235 (582)
356 KOG0946 ER-Golgi vesicle-tethe 57.7 84 0.0018 36.7 10.7 71 161-231 648-718 (970)
357 PF15290 Syntaphilin: Golgi-lo 57.6 2.1E+02 0.0046 29.6 12.5 36 155-190 67-102 (305)
358 PF14712 Snapin_Pallidin: Snap 57.5 1.1E+02 0.0024 25.3 12.3 77 155-232 13-91 (92)
359 KOG4001 Axonemal dynein light 57.3 1.5E+02 0.0034 29.3 11.1 33 154-186 183-215 (259)
360 KOG1003 Actin filament-coating 57.1 2E+02 0.0044 28.2 16.6 68 166-233 105-172 (205)
361 KOG4302 Microtubule-associated 56.8 1.2E+02 0.0026 34.7 11.8 58 156-213 61-132 (660)
362 KOG0288 WD40 repeat protein Ti 56.2 2.8E+02 0.006 30.2 13.6 15 275-289 206-220 (459)
363 KOG3091 Nuclear pore complex, 55.8 1.4E+02 0.003 33.1 11.5 24 107-134 337-360 (508)
364 KOG4196 bZIP transcription fac 55.6 47 0.001 30.5 6.8 23 155-177 80-102 (135)
365 PF01496 V_ATPase_I: V-type AT 55.6 8.4 0.00018 43.9 2.7 24 220-243 154-177 (759)
366 TIGR01730 RND_mfp RND family e 55.4 77 0.0017 31.1 9.2 18 215-232 112-129 (322)
367 PF09798 LCD1: DNA damage chec 55.3 67 0.0014 36.7 9.5 59 161-225 2-60 (654)
368 COG3883 Uncharacterized protei 55.2 2.5E+02 0.0054 28.7 18.1 27 110-136 33-59 (265)
369 PRK10929 putative mechanosensi 54.9 4.8E+02 0.01 31.9 17.5 43 200-242 281-323 (1109)
370 PF06632 XRCC4: DNA double-str 54.8 2.1E+02 0.0046 30.1 12.5 63 156-218 144-207 (342)
371 COG4985 ABC-type phosphate tra 54.7 1E+02 0.0022 31.2 9.5 26 161-186 219-244 (289)
372 PF14817 HAUS5: HAUS augmin-li 54.6 3.8E+02 0.0082 30.7 15.5 22 385-406 576-597 (632)
373 PF02050 FliJ: Flagellar FliJ 54.6 1.2E+02 0.0026 24.9 14.6 85 110-198 14-101 (123)
374 PF07889 DUF1664: Protein of u 54.5 1.7E+02 0.0037 26.6 11.8 58 175-232 66-123 (126)
375 PF07716 bZIP_2: Basic region 54.4 48 0.001 25.1 5.9 32 154-185 23-54 (54)
376 KOG0249 LAR-interacting protei 54.4 3E+02 0.0065 32.1 14.1 38 153-190 220-257 (916)
377 PF07303 Occludin_ELL: Occludi 54.3 80 0.0017 27.4 7.9 46 158-204 24-69 (101)
378 PF09403 FadA: Adhesion protei 54.1 1.2E+02 0.0026 27.5 9.3 27 168-194 57-83 (126)
379 KOG3850 Predicted membrane pro 54.1 2.6E+02 0.0056 30.3 12.9 20 270-289 393-412 (455)
380 COG4717 Uncharacterized conser 54.1 4.2E+02 0.0091 31.6 15.4 64 243-309 804-880 (984)
381 KOG3564 GTPase-activating prot 53.7 1E+02 0.0022 34.2 10.1 30 386-415 521-552 (604)
382 PF05377 FlaC_arch: Flagella a 53.7 61 0.0013 25.5 6.3 36 153-188 4-39 (55)
383 PRK10698 phage shock protein P 53.5 2.3E+02 0.0049 27.8 14.6 11 83-93 3-13 (222)
384 PF13166 AAA_13: AAA domain 53.5 3.7E+02 0.008 30.2 18.2 25 258-287 494-518 (712)
385 PRK05771 V-type ATP synthase s 53.2 88 0.0019 35.1 10.1 31 152-182 96-126 (646)
386 KOG0962 DNA repair protein RAD 53.2 4.1E+02 0.0088 32.9 15.7 22 229-250 948-969 (1294)
387 PRK10636 putative ABC transpor 53.1 83 0.0018 35.3 9.9 25 166-190 559-583 (638)
388 PF12777 MT: Microtubule-bindi 52.7 2.3E+02 0.005 29.3 12.5 19 385-403 293-311 (344)
389 TIGR01010 BexC_CtrB_KpsE polys 52.7 2.8E+02 0.0061 28.6 13.1 121 105-225 174-305 (362)
390 PF10498 IFT57: Intra-flagella 51.6 3.2E+02 0.0069 28.9 13.7 77 150-229 242-318 (359)
391 PRK10636 putative ABC transpor 51.6 97 0.0021 34.8 10.1 26 161-186 561-586 (638)
392 PF08286 Spc24: Spc24 subunit 51.5 4.6 0.0001 35.6 -0.2 41 153-193 3-43 (118)
393 TIGR03545 conserved hypothetic 51.4 2.3E+02 0.005 31.7 12.8 14 123-136 192-205 (555)
394 TIGR02971 heterocyst_DevB ABC 51.4 2.7E+02 0.0058 28.0 14.7 40 211-259 185-224 (327)
395 PF12761 End3: Actin cytoskele 51.2 1.2E+02 0.0026 29.6 9.3 33 200-232 162-194 (195)
396 PLN02320 seryl-tRNA synthetase 51.0 1.2E+02 0.0026 33.6 10.4 33 149-181 93-125 (502)
397 PF15372 DUF4600: Domain of un 50.9 2E+02 0.0043 26.4 12.4 38 159-199 54-91 (129)
398 KOG2264 Exostosin EXT1L [Signa 50.7 1.5E+02 0.0032 33.6 10.9 41 150-190 94-134 (907)
399 PF04977 DivIC: Septum formati 50.7 51 0.0011 26.0 5.8 29 154-182 22-50 (80)
400 KOG3758 Uncharacterized conser 50.6 4.4E+02 0.0095 30.2 14.9 89 85-183 16-105 (655)
401 PF09744 Jnk-SapK_ap_N: JNK_SA 50.3 2.2E+02 0.0048 26.7 14.4 54 153-206 86-139 (158)
402 KOG0978 E3 ubiquitin ligase in 50.0 4.7E+02 0.01 30.3 18.1 53 182-234 564-616 (698)
403 KOG0946 ER-Golgi vesicle-tethe 49.7 2.7E+02 0.006 32.8 13.1 54 155-208 663-716 (970)
404 PF09403 FadA: Adhesion protei 49.7 2E+02 0.0044 26.1 11.9 24 160-183 56-79 (126)
405 PLN02372 violaxanthin de-epoxi 49.7 2.3E+02 0.0049 30.9 11.8 81 144-225 367-452 (455)
406 KOG0796 Spliceosome subunit [R 49.3 3.3E+02 0.0072 28.6 12.6 32 104-135 56-89 (319)
407 PF13863 DUF4200: Domain of un 49.2 1.8E+02 0.0038 25.2 13.8 13 205-217 88-100 (126)
408 KOG0249 LAR-interacting protei 49.2 3.3E+02 0.0071 31.8 13.4 32 160-191 220-251 (916)
409 PF06785 UPF0242: Uncharacteri 49.2 3.6E+02 0.0077 28.7 15.6 14 78-91 46-59 (401)
410 PF05615 THOC7: Tho complex su 49.1 2E+02 0.0042 25.7 11.0 69 110-184 41-109 (139)
411 PF09731 Mitofilin: Mitochondr 49.0 4E+02 0.0087 29.3 19.4 16 107-122 250-265 (582)
412 PF00170 bZIP_1: bZIP transcri 48.8 1E+02 0.0022 24.0 7.1 29 161-189 31-59 (64)
413 PF03980 Nnf1: Nnf1 ; InterPr 48.7 1.7E+02 0.0038 25.0 10.4 77 108-184 14-108 (109)
414 smart00338 BRLZ basic region l 48.7 74 0.0016 24.8 6.3 29 161-189 31-59 (65)
415 PRK05689 fliJ flagellar biosyn 48.4 2E+02 0.0044 25.7 15.5 90 113-205 35-127 (147)
416 PF06120 Phage_HK97_TLTM: Tail 48.4 3.4E+02 0.0073 28.2 12.8 28 106-133 86-113 (301)
417 COG1340 Uncharacterized archae 48.2 3.4E+02 0.0073 28.2 19.7 18 157-174 132-149 (294)
418 PRK11281 hypothetical protein; 47.6 1.5E+02 0.0032 36.1 11.2 16 267-282 283-298 (1113)
419 PF14992 TMCO5: TMCO5 family 47.5 3.3E+02 0.0071 28.1 12.2 63 163-225 116-180 (280)
420 PF07352 Phage_Mu_Gam: Bacteri 46.9 1.4E+02 0.003 27.2 8.7 14 245-259 72-85 (149)
421 KOG0018 Structural maintenance 46.6 5.1E+02 0.011 31.5 14.9 34 100-134 725-763 (1141)
422 PF02388 FemAB: FemAB family; 46.5 1.3E+02 0.0029 31.8 9.7 15 120-134 213-227 (406)
423 PF15188 CCDC-167: Coiled-coil 46.4 1.1E+02 0.0025 26.0 7.4 23 114-136 4-26 (85)
424 PRK11578 macrolide transporter 46.1 3E+02 0.0065 28.3 12.1 27 206-232 159-185 (370)
425 PF07851 TMPIT: TMPIT-like pro 46.0 2.8E+02 0.006 29.2 11.7 26 111-136 7-32 (330)
426 PF14723 SSFA2_C: Sperm-specif 45.8 2.9E+02 0.0062 26.7 16.1 20 116-135 106-125 (179)
427 PF01486 K-box: K-box region; 45.6 1.9E+02 0.004 24.5 11.0 34 110-143 14-47 (100)
428 PF14362 DUF4407: Domain of un 45.6 2.9E+02 0.0062 27.8 11.6 6 272-277 261-266 (301)
429 PF01519 DUF16: Protein of unk 45.3 2.2E+02 0.0047 25.2 9.3 28 160-187 50-77 (102)
430 KOG4603 TBP-1 interacting prot 45.3 2.1E+02 0.0045 27.8 9.6 65 156-232 79-143 (201)
431 PF04977 DivIC: Septum formati 45.0 53 0.0012 25.9 5.1 31 159-189 20-50 (80)
432 KOG4438 Centromere-associated 44.8 4.5E+02 0.0097 28.8 13.1 30 150-179 174-203 (446)
433 KOG4796 RNA polymerase II elon 44.6 50 0.0011 36.8 6.2 46 161-206 520-566 (604)
434 PF03245 Phage_lysis: Bacterio 44.6 1.8E+02 0.0039 26.0 8.9 40 170-209 14-53 (125)
435 KOG3564 GTPase-activating prot 44.4 3.6E+02 0.0079 30.1 12.4 31 104-134 17-47 (604)
436 PF09340 NuA4: Histone acetylt 44.4 52 0.0011 27.4 5.0 33 163-198 2-34 (80)
437 PRK09343 prefoldin subunit bet 44.3 2.3E+02 0.005 25.1 10.8 15 215-229 95-109 (121)
438 PF05622 HOOK: HOOK protein; 44.2 7.5 0.00016 44.1 0.0 26 207-232 393-418 (713)
439 PF14932 HAUS-augmin3: HAUS au 43.6 3.4E+02 0.0075 27.0 13.3 97 110-208 70-193 (256)
440 PF05008 V-SNARE: Vesicle tran 43.6 1.6E+02 0.0035 23.5 7.8 28 163-190 25-52 (79)
441 KOG0978 E3 ubiquitin ligase in 43.4 5.8E+02 0.013 29.6 17.6 73 164-236 553-625 (698)
442 KOG0963 Transcription factor/C 43.1 5.6E+02 0.012 29.3 16.7 124 111-234 192-332 (629)
443 PF07407 Seadorna_VP6: Seadorn 43.0 1.4E+02 0.0031 31.5 8.9 14 327-340 242-255 (420)
444 PF07195 FliD_C: Flagellar hoo 42.9 85 0.0018 30.7 7.1 45 162-209 192-236 (239)
445 PF04899 MbeD_MobD: MbeD/MobD 42.9 1.9E+02 0.0041 23.7 8.7 36 198-233 28-63 (70)
446 KOG2129 Uncharacterized conser 42.6 5E+02 0.011 28.5 16.8 81 165-245 255-344 (552)
447 KOG2991 Splicing regulator [RN 42.5 4E+02 0.0087 27.4 17.3 23 207-229 179-201 (330)
448 PF10458 Val_tRNA-synt_C: Valy 42.4 1.5E+02 0.0033 23.4 7.2 24 113-136 2-25 (66)
449 PLN02678 seryl-tRNA synthetase 42.4 1.9E+02 0.0042 31.5 10.3 25 332-368 301-325 (448)
450 PF05557 MAD: Mitotic checkpoi 42.4 8.3 0.00018 43.7 0.0 22 113-134 310-331 (722)
451 KOG4807 F-actin binding protei 41.9 2.8E+02 0.0061 30.1 11.0 82 148-229 362-452 (593)
452 PF02994 Transposase_22: L1 tr 41.6 81 0.0018 33.3 7.2 121 112-236 59-193 (370)
453 KOG4593 Mitotic checkpoint pro 41.6 6.2E+02 0.013 29.4 17.8 23 104-126 115-137 (716)
454 PRK03598 putative efflux pump 41.5 3.3E+02 0.0072 27.5 11.4 88 142-233 74-166 (331)
455 KOG1103 Predicted coiled-coil 41.4 4.8E+02 0.01 28.0 17.0 28 77-104 57-85 (561)
456 COG0172 SerS Seryl-tRNA synthe 41.3 3.7E+02 0.0079 29.4 12.0 92 148-247 28-119 (429)
457 PF11068 YlqD: YlqD protein; 41.1 2.8E+02 0.0061 25.3 11.1 26 161-186 25-50 (131)
458 KOG4657 Uncharacterized conser 41.0 3.9E+02 0.0085 26.9 14.3 13 174-186 90-102 (246)
459 PRK05431 seryl-tRNA synthetase 41.0 2.1E+02 0.0046 30.7 10.2 28 330-369 292-319 (425)
460 PF03148 Tektin: Tektin family 40.8 4.6E+02 0.01 27.7 17.8 29 206-234 325-353 (384)
461 PRK10361 DNA recombination pro 40.7 5.4E+02 0.012 28.4 14.0 57 154-210 65-125 (475)
462 COG1842 PspA Phage shock prote 40.7 3.7E+02 0.0081 26.6 17.2 130 81-227 1-149 (225)
463 COG1566 EmrA Multidrug resista 40.7 2.9E+02 0.0063 29.2 11.0 42 143-184 85-126 (352)
464 PF13747 DUF4164: Domain of un 40.4 2.3E+02 0.005 24.0 11.6 26 161-186 37-62 (89)
465 PF04518 Effector_1: Effector 40.3 2.2E+02 0.0048 30.5 10.0 91 148-245 199-294 (379)
466 KOG4787 Uncharacterized conser 40.2 3.1E+02 0.0066 31.4 11.3 71 111-182 462-541 (852)
467 PF04420 CHD5: CHD5-like prote 40.2 50 0.0011 30.7 4.8 8 239-246 113-120 (161)
468 PF12126 DUF3583: Protein of u 40.0 4.6E+02 0.01 27.4 12.8 36 154-189 51-87 (324)
469 PRK10722 hypothetical protein; 39.8 1.1E+02 0.0024 30.8 7.4 33 162-194 175-207 (247)
470 PF04799 Fzo_mitofusin: fzo-li 39.7 2.9E+02 0.0062 26.5 9.8 19 174-192 124-142 (171)
471 TIGR03545 conserved hypothetic 39.6 5.6E+02 0.012 28.8 13.5 25 371-395 497-521 (555)
472 PF14282 FlxA: FlxA-like prote 39.6 2.5E+02 0.0055 24.3 9.7 17 107-123 18-34 (106)
473 PF07851 TMPIT: TMPIT-like pro 39.2 3.6E+02 0.0078 28.4 11.3 26 146-171 8-33 (330)
474 PF13166 AAA_13: AAA domain 39.2 6E+02 0.013 28.5 17.9 20 263-282 535-554 (712)
475 PRK14160 heat shock protein Gr 39.0 3.9E+02 0.0085 26.3 12.1 21 270-290 137-157 (211)
476 PF08172 CASP_C: CASP C termin 38.8 1.6E+02 0.0034 29.6 8.3 38 154-191 84-121 (248)
477 PF07407 Seadorna_VP6: Seadorn 38.6 1.6E+02 0.0035 31.2 8.5 29 152-180 35-63 (420)
478 TIGR00293 prefoldin, archaeal 38.5 2.7E+02 0.0058 24.2 11.2 26 110-135 15-40 (126)
479 PF12072 DUF3552: Domain of un 38.5 3.6E+02 0.0079 25.8 14.1 88 145-235 60-147 (201)
480 PRK15136 multidrug efflux syst 38.3 3.2E+02 0.007 28.7 11.0 14 245-259 222-235 (390)
481 PRK14127 cell division protein 38.3 1.2E+02 0.0027 26.9 6.6 53 145-197 33-102 (109)
482 KOG3595 Dyneins, heavy chain [ 38.0 9E+02 0.02 30.2 16.4 27 109-135 701-727 (1395)
483 PF06008 Laminin_I: Laminin Do 37.9 4.1E+02 0.0089 26.3 15.6 125 111-238 90-218 (264)
484 PF11471 Sugarporin_N: Maltopo 37.9 58 0.0013 25.9 4.1 31 161-191 30-60 (60)
485 cd07673 F-BAR_FCHO2 The F-BAR 37.9 4.3E+02 0.0094 26.5 17.0 147 109-269 121-268 (269)
486 TIGR00414 serS seryl-tRNA synt 37.8 1.7E+02 0.0037 31.4 8.9 62 146-207 41-106 (418)
487 PF13600 DUF4140: N-terminal d 37.6 74 0.0016 26.9 5.1 35 156-190 70-104 (104)
488 PF10267 Tmemb_cc2: Predicted 37.5 5.6E+02 0.012 27.7 18.3 188 5-211 127-318 (395)
489 PF06818 Fez1: Fez1; InterPro 37.4 4.1E+02 0.0089 26.1 11.6 84 150-233 11-94 (202)
490 smart00502 BBC B-Box C-termina 37.4 2.4E+02 0.0053 23.5 13.2 84 145-234 10-94 (127)
491 PRK00888 ftsB cell division pr 37.3 77 0.0017 27.6 5.2 32 159-190 30-61 (105)
492 TIGR02971 heterocyst_DevB ABC 37.2 2.6E+02 0.0057 28.0 9.8 73 161-233 53-125 (327)
493 PF09738 DUF2051: Double stran 37.0 5E+02 0.011 26.9 12.6 82 151-232 79-160 (302)
494 PF10212 TTKRSYEDQ: Predicted 37.0 6.4E+02 0.014 28.2 16.1 103 107-218 412-514 (518)
495 KOG2412 Nuclear-export-signal 37.0 5.8E+02 0.013 28.8 12.8 88 103-195 185-273 (591)
496 COG4467 Regulator of replicati 36.9 70 0.0015 28.5 4.8 87 158-250 3-95 (114)
497 PF12018 DUF3508: Domain of un 36.9 4.6E+02 0.01 26.5 12.5 84 108-191 9-94 (281)
498 COG1842 PspA Phage shock prote 36.9 4.3E+02 0.0093 26.2 14.6 89 145-233 34-127 (225)
499 PF12329 TMF_DNA_bd: TATA elem 36.9 2.3E+02 0.0051 23.1 10.7 71 146-216 2-72 (74)
500 KOG2196 Nuclear porin [Nuclear 36.8 4.7E+02 0.01 26.6 15.6 117 109-235 114-249 (254)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-102 Score=791.69 Aligned_cols=396 Identities=53% Similarity=0.888 Sum_probs=362.2
Q ss_pred CCCccccccCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCceEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 013164 1 MDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHS 79 (448)
Q Consensus 1 ~d~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~esfv~l~~s~~~~d~~~~~~~~~~~~~~~~~~~~~~~ls~ 79 (448)
|+.+++|+|.+.+ |..+.|++++++.. ++.. ++.++.++||+.+.+.+..+..+.+-+....+-.+..+.+..++++
T Consensus 37 ~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~ 114 (447)
T KOG2751|consen 37 MDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSA 114 (447)
T ss_pred cchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCcccccccccccccccccccchhhhhHHHHH
Confidence 6789999998865 99999999988877 5555 8888899999988776665554444444444433455667888999
Q ss_pred hHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Q 013164 80 TITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEER 159 (448)
Q Consensus 80 ~i~~l~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~ 159 (448)
++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++..+ .+++++.+|++.++.||+
T Consensus 115 ~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~ 193 (447)
T KOG2751|consen 115 TINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEE 193 (447)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987643 478899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 239 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd 239 (448)
+|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.++++++++|++++++++.||++|++|||||.
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~ 273 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNA 273 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecCC---ceee
Q 013164 240 AFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNN---NTYE 316 (448)
Q Consensus 240 ~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~~~---~~~~ 316 (448)
+|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||||||+|+|+.... ..++
T Consensus 274 ~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lvp~GshSyI~~~~~~~~~el~ 352 (447)
T KOG2751|consen 274 TFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLVPMGSHSYIKKRMVNLPYELP 352 (447)
T ss_pred eeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeeecccchhHHHHhccCCCccch
Confidence 999999999999999999999999999999999999999999999999999999 999999999999986543 4567
Q ss_pred cc--cCCCCcccccchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCcccee----eEEecCCCCchhhH
Q 013164 317 LF--GPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENY----SITQSFNKQENWTK 390 (448)
Q Consensus 317 Ly--g~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~~dkI~g~----SI~l~~n~~e~WTk 390 (448)
+| |+.+|||++|||+||+|||+||+||++++++++ +.+.+||.|++|+|+|. +|++.||++++||+
T Consensus 353 l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~--------~~~~lPy~ie~d~i~d~~~~y~i~~~fN~De~WTr 424 (447)
T KOG2751|consen 353 LFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKD--------TSFNLPYDIEKDKLNDPSSSYSIKVQFNSDENWTR 424 (447)
T ss_pred hhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcC--------cccCCcchhhcccccCCccceeEEeeecchHHHHH
Confidence 77 455899999999999999999999999999886 46999999999999986 69999999999999
Q ss_pred HHHHHHhhHHHHHHHHhh
Q 013164 391 ALKYTLCNLKWALFWFVG 408 (448)
Q Consensus 391 AlK~lLtNlKwllaw~~~ 408 (448)
||||||||+||++|||+.
T Consensus 425 ALkFmLTnlK~~~A~vss 442 (447)
T KOG2751|consen 425 ALKFMLTNLKWLLAWVSS 442 (447)
T ss_pred HHHHHHhccHHHHHHHhh
Confidence 999999999999999985
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=8.2e-98 Score=748.71 Aligned_cols=304 Identities=46% Similarity=0.854 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 100 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 100 PLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 179 (448)
|||.||++.|+++|+++++++++|+++|..||++++.+.....+..++.+++.++++||+++.++|++||++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853321223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013164 180 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 180 ~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGr 259 (448)
.+++.+.++++++|.+||+++|.+++++.++++++++++++|++++++|++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecC----CceeecccCC-----CCcccccch
Q 013164 260 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELFGPV-----NLFWSTRYD 330 (448)
Q Consensus 260 lp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~~----~~~~~Lyg~~-----~lf~~~kFD 330 (448)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++.. +.+|+|||++ ++|++++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999999 99999999999999875 5789999876 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhCC
Q 013164 331 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 410 (448)
Q Consensus 331 ~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~~dkI~g~SI~l~~n~~e~WTkAlK~lLtNlKwllaw~~~~t 410 (448)
.||+|||+||+||++++.++|+. .++|||+|++|||||.||++.+|++++||+||||||||+||+++|++.++
T Consensus 240 ~am~~~L~~~~q~~~~~~~~~~~-------~~~lPy~i~~~~I~~~si~~~~~~~~~WT~AlK~lLtnlKw~l~~~s~~~ 312 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEFVEKRDPQ-------SFELPYKIDKDKIGGVSIKLQFNSEEEWTKALKYLLTNLKWLLAWVSSQL 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------SS-ECTTEECTCES-STTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-------ccccceeccCCccCCeeeeecCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987641 69999999999999999999999999999999999999999999999876
Q ss_pred c
Q 013164 411 N 411 (448)
Q Consensus 411 ~ 411 (448)
+
T Consensus 313 ~ 313 (314)
T PF04111_consen 313 S 313 (314)
T ss_dssp -
T ss_pred c
Confidence 4
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.45 E-value=5.6e-11 Score=116.50 Aligned_cols=245 Identities=18% Similarity=0.216 Sum_probs=139.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 98 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG-EAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 98 DhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~-~~~-~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 175 (448)
-..+|..|+..=+-.++.++.++..+.+....-++.+-. ... .......+..+...++.....+..+++.+.++.++.
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999888866654322 100 001112223333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCceeeee--------
Q 013164 176 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH-------- 245 (448)
Q Consensus 176 ~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~--L~ktNv~nd~F~I~h-------- 245 (448)
.+++.+++.+.......-..+..........+....++....+.++.....++.. -+...-+...|+|..
T Consensus 90 r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~ 169 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPS 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCC
Confidence 4444444333322221111222222222223333333333333333332222221 112223556899932
Q ss_pred ---cCCeeeeccccCCCCC-CCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEec---CCceeecc
Q 013164 246 ---DGEFGTINNFRLGRLP-KIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELF 318 (448)
Q Consensus 246 ---dG~fGTINGlRLGrlp-~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~---~~~~~~Ly 318 (448)
.+.|. |.|++|=... ....+=.+|+||+|+++.|+..+|.+|++.. .|.+.|+||+|.|.+. ....++.+
T Consensus 170 ~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~L--py~i~~~gs~s~i~d~~~~~~~~~~~~ 246 (302)
T PF10186_consen 170 DSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPL--PYPITPSGSRSTIIDFSPSIDRPLPSL 246 (302)
T ss_pred CCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcccCccccchhhcccccCCcchhh
Confidence 35665 9998876553 2345668999999999999999999998877 6999999999998771 11122211
Q ss_pred cCCCCcccccchHHHHHHHHHHHHHHH
Q 013164 319 GPVNLFWSTRYDKAMTLFLSCLKDFAE 345 (448)
Q Consensus 319 g~~~lf~~~kFD~AM~afL~cl~q~~~ 345 (448)
...+--...+|..|+..+-.-+.|++.
T Consensus 247 ~~~~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 247 SYESGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111246899999999998888875
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-09 Score=113.43 Aligned_cols=277 Identities=12% Similarity=0.012 Sum_probs=166.3
Q ss_pred ccchHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH----hccccccC
Q 013164 77 FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYE----------ACLQRL----EGEARDVL 142 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~----------~fL~~L----~~~~~~~~ 142 (448)
.+....+-...|+-.+.++.+|||.|..|...+...+-+=...+....-.|. .|.+.| .++.....
T Consensus 77 ~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~ 156 (447)
T KOG2751|consen 77 SVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAE 156 (447)
T ss_pred cceecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667889999999999999999999887754433333222221221 122111 11110000
Q ss_pred CHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013164 143 SEAD-FLKEKLKIEE-----EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 143 ~ee~-l~~e~~~Le~-----EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
.+-+ .++-++.||+ ++..+..+++++..|..++-+++++++++...++.++.+. +.
T Consensus 157 ~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~--------------~~---- 218 (447)
T KOG2751|consen 157 DEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKEL--------------EF---- 218 (447)
T ss_pred HHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----
Confidence 0000 0111112221 4445555666666666666666666655555554433211 11
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcee------eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCC
Q 013164 217 ISSKIEVSQAHLELLKRTNVLNDAFP------IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRP 290 (448)
Q Consensus 217 l~~q~~~~~~~Ld~L~ktNv~nd~F~------I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~ 290 (448)
.-.+..++.++|.+-|. |-|+|...+|++.|.|+++...+-|++++++||-.+.+.-.++.+.|+
T Consensus 219 ---------~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~F 289 (447)
T KOG2751|consen 219 ---------KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNF 289 (447)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccc
Confidence 11222222333333332 567899999999999999999999999999999999999999999988
Q ss_pred CCCCceeeeecCCCceEEecC----------------Cceeec--ccCCCCcccccchHHHHHHHHHHHHHHHHHhccCC
Q 013164 291 KFPYRIKIIPMGSYPRIMDSN----------------NNTYEL--FGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQ 352 (448)
Q Consensus 291 ~f~~~y~LvPmGS~SkI~~~~----------------~~~~~L--yg~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~ 352 (448)
... +|..+|.|..+-+.... -..|.| ||+.. ++++++
T Consensus 290 RLG-~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshS-----------------------yI~~~~- 344 (447)
T KOG2751|consen 290 RLG-RLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHS-----------------------YIKKRM- 344 (447)
T ss_pred eec-cccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchh-----------------------HHHHhc-
Confidence 777 89999998776554321 112222 23222 333322
Q ss_pred CCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHh-hCCccCCcccc
Q 013164 353 ENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV-GNTNFQPVSAM 418 (448)
Q Consensus 353 ~~~~~~~~~~~LPY~I~~dkI~g~SI~l~~n~~e~WTkAlK~lLtNlKwllaw~~-~~t~~~~~~~~ 418 (448)
..+||.-..=--||..+... -..-+||.-.|-.|+.+.-++. +.|+|-++-.+
T Consensus 345 ---------~~~~~el~l~~sgg~~~f~~----tkfD~amvafLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 345 ---------VNLPYELPLFQSGGLKFFWS----TKFDKAMVAFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred ---------cCCCccchhhcCCCceeeec----cccCHHHHHHHHHHHHHHHHHHhcCcccCCcchh
Confidence 13666555545566666553 2566899999999999998887 67788876665
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.62 E-value=7.9e-06 Score=84.06 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC-Ce--------
Q 013164 182 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG-EF-------- 249 (448)
Q Consensus 182 le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~n---d~F~I~hdG-~f-------- 249 (448)
++.-...|+..+.++-...-.++.+..++.+.+-++.+ .++++.-- ++|.|..+| +.
T Consensus 136 ~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a-----------~re~fL~~~~~~~~~irq~~~~~s~i~~l~~ 204 (377)
T KOG2896|consen 136 LEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVA-----------KRELFLEQRIQDTFKIRQDGSPLSKILPLQF 204 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHhhHhHHHhhhhhhhccCcchheeecCCc
Confidence 33334445555555555555566655544444444433 33333332 678887776 22
Q ss_pred ------eeeccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecCCc------eee
Q 013164 250 ------GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNN------TYE 316 (448)
Q Consensus 250 ------GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~~~~------~~~ 316 (448)
-||-|++|--.++..- +=.|+-||+|.++.|+++||.+|.+.. +|.|++-||.|+|.|.-+. .++
T Consensus 205 ~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pL--RYPIl~~~Sks~I~D~i~~~~~ttr~fp 282 (377)
T KOG2896|consen 205 SYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPL--RYPILLAGSKSYIRDYIPDIETTTREFP 282 (377)
T ss_pred ccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhcccc--ccccccccccceecccCCcccccccccc
Confidence 3677777765554222 366899999999999999999996655 7999999999999875322 255
Q ss_pred cccCCCCcccccchHHHHHHHHHHHHHHHH
Q 013164 317 LFGPVNLFWSTRYDKAMTLFLSCLKDFAEF 346 (448)
Q Consensus 317 Lyg~~~lf~~~kFD~AM~afL~cl~q~~~~ 346 (448)
+|.-..- ..+|+.||-.+-.=+.|+..-
T Consensus 283 ly~k~~~--~e~f~~glylL~qNiaqlr~~ 310 (377)
T KOG2896|consen 283 LYTKSQE--IEQFEYGLYLLNQNIAQLRYD 310 (377)
T ss_pred Cccccch--HHHHHHHHHHHhccHHHHHHH
Confidence 5532110 357888887766666666543
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.36 E-value=0.062 Score=55.05 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 121 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 200 (448)
Q Consensus 121 ~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~ 200 (448)
..+.+.+..-++.++.+ ++++.+++.+||.|..++.+++.+++.+.++++++......+...+..+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666543 356778888899999999999999988888888777766666666655544555555
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHH----HHHH-hhcccCCCc
Q 013164 201 NNFQFQLIAHQEERDAIS-----------------------------------SKIEVSQAH----LELL-KRTNVLNDA 240 (448)
Q Consensus 201 n~~q~ql~~~~~e~~sl~-----------------------------------~q~~~~~~~----Ld~L-~ktNv~nd~ 240 (448)
..+..++....++++.|. +.|..|--| |..| ++.|+=-.-
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 556666555555555443 122222222 2222 344433345
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChHHHHHHHHHHHHHHHHHHhhcC---C-CCCCceeeeecCC
Q 013164 241 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 303 (448)
Q Consensus 241 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~~l~---~-~f~~~y~LvPmGS 303 (448)
|.|---|.|.+|=-+.-+. ..+ ..-.+...|.|+--.+-+|.-++..+. . .|.+-|++.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 6666666666665544111 001 124688999999888888888877664 1 233345442
Q ss_pred CceEEecCCceeecccCCCCcccccchHHHHHHHHHHHHHHHHHhcc
Q 013164 304 YPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 350 (448)
Q Consensus 304 ~SkI~~~~~~~~~Lyg~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~ 350 (448)
.-+|-+ .++-+. +-...++-+||.-+|..++-+..|+.++
T Consensus 272 ~~~I~~---~si~~~----~~~~~~WT~AlK~lLtnlKw~l~~~s~~ 311 (314)
T PF04111_consen 272 KDKIGG---VSIKLQ----FNSEEEWTKALKYLLTNLKWLLAWVSSQ 311 (314)
T ss_dssp TTEECT---CES-ST----TS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeeec----CCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233322 122111 1124588899999999999998888654
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.01 E-value=0.03 Score=55.54 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL--EL 184 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l--e~ 184 (448)
..++.+|.+.+.+...++.|..+|++++.+....- .-+++..+++.++.+-..+..+|.++....+..+..+... +.
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 35778999999999999999999998875432100 0123333444444444444444444444444443333222 23
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 185 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 185 e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+..+|+.+....=+..+++..++..+.+++..+..++...+..+.++++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666666666666666555555543
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.85 E-value=0.065 Score=62.23 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 013164 105 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--------EADFLKEKLKIEEEE-RKLEAAIEETEKQNAEV 175 (448)
Q Consensus 105 C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~--------ee~l~~e~~~Le~EE-~~L~~eL~~lE~e~~~l 175 (448)
|..-=.+..+.+++.+.+..+.|.+-...++.+..+..+ .+.+.+.+..++++. ..+..++.+.+.+.+.|
T Consensus 327 ~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 327 ELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333334444555555555555555444433322211100 012233444444444 55566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013164 176 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 176 ~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
..|.++++.....|.++++.+-.++..-+-++...+.+...+..++++.+.+|..|++++
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777777777777777777777777778888899999999999999865
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.07 E-value=0.19 Score=58.13 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
..++.+++.+...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.
T Consensus 433 ~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~ 501 (1164)
T TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444445566666666666666665555555555444444333
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.81 E-value=0.58 Score=43.77 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
..+..+++++++.++.......++..++... ....+.++..+++...+....+.+.++..++.+++.+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544555554443321 1112223334444444555555555555555544445555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 013164 188 RFKELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 188 ~l~~eE~~~w~e~n~~q~ql~~~~ 211 (448)
.+...-++.+..++.++..+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444445555555554444433
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.75 E-value=0.33 Score=57.64 Aligned_cols=97 Identities=21% Similarity=0.337 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC
Q 013164 171 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG 247 (448)
Q Consensus 171 e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~n---d~F~I~hdG 247 (448)
+.++++.++..++.....+.+.-...|+++...+..+.....+..++..++......... .+..- ........|
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~G 516 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESGLPG 516 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhccCCC
Confidence 333444444444444444444444556666666666555555555555444444433322 00000 111122345
Q ss_pred CeeeeccccCCCCCCCCCChHH-HHHHHH
Q 013164 248 EFGTINNFRLGRLPKIPVEWDE-INAAWG 275 (448)
Q Consensus 248 ~fGTINGlRLGrlp~~~V~W~E-INAAwG 275 (448)
.||+ +|-+-.++..|.- |-+|+|
T Consensus 517 v~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 517 VYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred ccch-----HHHhcCcChHHHHHHHHHcc
Confidence 6664 4444445557776 777777
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.74 E-value=0.96 Score=44.55 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=20.2
Q ss_pred hhcccCCCceeeeecCCeeeeccccCCCC
Q 013164 232 KRTNVLNDAFPIWHDGEFGTINNFRLGRL 260 (448)
Q Consensus 232 ~ktNv~nd~F~I~hdG~fGTINGlRLGrl 260 (448)
+...+|.....| ||.=-+.+=|||||+
T Consensus 166 ~~i~~~~~~i~~--dG~~~~V~~LrlGr~ 192 (251)
T PF11932_consen 166 RTIEVYQGTITL--DGEERQVDFLRLGRV 192 (251)
T ss_pred CceeEEEEEEeE--CCeEEEEEEEeecch
Confidence 445555565555 898889999999995
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=95.66 E-value=0.53 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 013164 195 RYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 195 ~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
.++..++.++.++..++.+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444433
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.62 E-value=0.62 Score=54.05 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.6
Q ss_pred cccchHHHHHHHH
Q 013164 326 STRYDKAMTLFLS 338 (448)
Q Consensus 326 ~~kFD~AM~afL~ 338 (448)
..+|..|+.+.|.
T Consensus 534 ~~~y~~Aie~~lg 546 (1164)
T TIGR02169 534 GERYATAIEVAAG 546 (1164)
T ss_pred CHHHHHHHHHHhh
Confidence 4678888887775
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.59 E-value=0.81 Score=45.54 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ-- 225 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~-- 225 (448)
..|+..++.....|..+|.++..+.+.+..++..++.+ +..+|..+-.....+........++..++..+.....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~---~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER---LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555544433 2344444555555555555544444444444444333
Q ss_pred ------HHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 013164 226 ------AHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 260 (448)
Q Consensus 226 ------~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrl 260 (448)
...+++++.+ -+-..+.|+|=|=|..
T Consensus 172 l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~GC 203 (239)
T COG1579 172 LDPELLSEYERIRKNK---------KGVGVVPLEGRVCGGC 203 (239)
T ss_pred cCHHHHHHHHHHHhcC---------CCceEEeecCCcccCC
Confidence 3345555532 1225677887776653
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.45 E-value=0.34 Score=52.26 Aligned_cols=35 Identities=11% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 98 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQR 133 (448)
Q Consensus 98 DhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~ 133 (448)
++..|.-|...+-+. ..++..++.+++.+..-++.
T Consensus 283 ~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~ 317 (562)
T PHA02562 283 KGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEK 317 (562)
T ss_pred CCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 356677776554333 33334444444444433333
No 17
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.42 E-value=0.9 Score=52.86 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 102 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 102 C~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~ 132 (448)
|..|+..| ..|+.+.+...++...|..+..
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555443 4466677777666666665544
No 18
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.41 E-value=1.1 Score=46.09 Aligned_cols=158 Identities=12% Similarity=0.183 Sum_probs=80.9
Q ss_pred ccchHHHHHHHHHhhcCCcccCCcchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 013164 77 FHSTITVLKRAFEIATSQTQVEQPLCLE--------------CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL 142 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~s~iDhPLC~e--------------C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~ 142 (448)
|.|.+..-..+..|.|.-.+ |.--+.. |...-++.|++++..++.|....+.-..+|..++....
T Consensus 116 LrHeL~~kdeLL~~ys~~~e-e~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E 194 (306)
T PF04849_consen 116 LRHELSMKDELLQIYSNDDE-ESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE 194 (306)
T ss_pred HHHHHHHHHHHHHhcCcHhh-hcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Confidence 34555555667677764332 1111222 23345788999999999999888877777765432110
Q ss_pred CH-----HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHH
Q 013164 143 SE-----ADFLKEK-------LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW-------QEFNNF 203 (448)
Q Consensus 143 ~e-----e~l~~e~-------~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w-------~e~n~~ 203 (448)
.. .++.+++ ..|.+|..+...+...-..|...|-.++.+++.+.+.+-.+-++.- ..-+.+
T Consensus 195 ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 195 EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 00 0111111 1223333333333333333334444444444444333322211122 223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013164 204 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 204 q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
+.++.++++......+-+.-++.+|..||+.|
T Consensus 275 ~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 275 QAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 55566666666666666777899999999876
No 19
>PRK11637 AmiB activator; Provisional
Probab=95.27 E-value=0.41 Score=50.65 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|..++.+...++++|..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776666554432 2233444444444444555555555555555555555554444443
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.07 E-value=2.2 Score=43.81 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=22.1
Q ss_pred CccchHHHHHHHHHhhcCCcccCCcchH
Q 013164 76 GFHSTITVLKRAFEIATSQTQVEQPLCL 103 (448)
Q Consensus 76 ~ls~~i~~l~~lFdIlS~~s~iDhPLC~ 103 (448)
.|...|..-.++|.=+..++..+.|-+.
T Consensus 79 EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 79 ELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 3677788888899888888888887766
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.98 E-value=1.3 Score=51.17 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.2
Q ss_pred ccchHHHHHHH
Q 013164 327 TRYDKAMTLFL 337 (448)
Q Consensus 327 ~kFD~AM~afL 337 (448)
.+|+.|+.+.+
T Consensus 533 ~~~~~a~~~~~ 543 (1179)
T TIGR02168 533 EGYEAAIEAAL 543 (1179)
T ss_pred hhHHHHHHHHH
Confidence 56666665543
No 22
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.90 E-value=1.8 Score=50.09 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=13.4
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 013164 327 TRYDKAMTLFLSCLKDFAEFA 347 (448)
Q Consensus 327 ~kFD~AM~afL~cl~q~~~~~ 347 (448)
..|+..+.+|..+...|....
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~~F 1045 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNENF 1045 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766665533
No 23
>PRK11637 AmiB activator; Provisional
Probab=94.81 E-value=2.1 Score=45.29 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
+....++|..+..+++.+.++++..+.+++.+..+|+.+..+.=..+..+..++...+.++..+
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555554444443333334433333333333333
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.78 E-value=1.2 Score=52.26 Aligned_cols=118 Identities=19% Similarity=0.305 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013164 166 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 245 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~h 245 (448)
..+..++.+.+.+++.|+.+.+.++++..+.=.++|.++..+..-++++..++..+......++.-+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~------------- 456 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS------------- 456 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 4445555666667777777777777777777777788877777777777777766666555544332
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeeecCCCceEEec
Q 013164 246 DGEFGTINNFRLGRLPKIPVEWDEINAAWG-QACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS 310 (448)
Q Consensus 246 dG~fGTINGlRLGrlp~~~V~W~EINAAwG-Q~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~ 310 (448)
-+|+.++=+.-.. +.|+| ++.-||.+|-+... .|+ +--.=|+|+|-++.+.
T Consensus 457 ----~~l~~lk~~k~dk--------vs~FG~~m~~lL~~I~r~~~-~f~-~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 457 ----EELKDLKKTKTDK--------VSAFGPNMPQLLRAIERRKR-RFQ-TPPKGPLGKYVTLKEP 508 (1074)
T ss_pred ----HHHHHHHhcccch--------hhhcchhhHHHHHHHHHHHh-cCC-CCCCCCccceeEecCc
Confidence 1244444443211 22333 56778888876542 444 2224488888888654
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.75 E-value=1 Score=53.15 Aligned_cols=96 Identities=21% Similarity=0.328 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 236 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv 236 (448)
...+...+|..++.+...+..|+.+.+++...+..++..+-...+.+...+.+......+...+ ..+..-|-+|++.
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r~kes-- 612 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMRLKES-- 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHc--
Confidence 3333444566666666667777777777777777777777777666665554443333222222 1222334555543
Q ss_pred CCCceeeeecCCeeeeccc--cCCCCCCCCCChH
Q 013164 237 LNDAFPIWHDGEFGTINNF--RLGRLPKIPVEWD 268 (448)
Q Consensus 237 ~nd~F~I~hdG~fGTINGl--RLGrlp~~~V~W~ 268 (448)
|-|+|| |||-|..++-.++
T Consensus 613 -------------G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 -------------GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred -------------CCCCccccccccccccchHHH
Confidence 445666 6776655544443
No 26
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.39 E-value=1.2 Score=47.74 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=54.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 99 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 178 (448)
Q Consensus 99 hPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~e 178 (448)
+|.|..| ....+++++++.+|+..-..-+.....+. ..+++++.+++.+...+..+|.+.+.++.++++.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~~------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQR------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 34445777777776666555554433221 3456666777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 179 LKELELKSKRFKELE 193 (448)
Q Consensus 179 l~~le~e~~~l~~eE 193 (448)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666665444
No 27
>PRK09039 hypothetical protein; Validated
Probab=94.36 E-value=2.3 Score=44.23 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.3
Q ss_pred CCchhhHHHHHHHhhHHHHHHH
Q 013164 384 KQENWTKALKYTLCNLKWALFW 405 (448)
Q Consensus 384 ~~e~WTkAlK~lLtNlKwllaw 405 (448)
...+|.-+.+--..-.++++..
T Consensus 282 ~~~N~~LS~~RA~aV~~~Li~~ 303 (343)
T PRK09039 282 FRDNWELSSARAISVVKFLIAL 303 (343)
T ss_pred cccHHHHHHHHHHHHHHHHHHC
Confidence 3568999998888888888754
No 28
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.21 E-value=1.8 Score=49.27 Aligned_cols=169 Identities=15% Similarity=0.206 Sum_probs=98.4
Q ss_pred cCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 97 VEQPLCLECMRVLSDKLDKEV-------DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 169 (448)
Q Consensus 97 iDhPLC~eC~d~Lle~Ld~ql-------e~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE 169 (448)
-..|.=.||...|.+..+.=. +.+..|.+.....|+....+... .-.++.++++.|.+.-++|.+.++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899988876533222 22222333333333322221110 113345555666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013164 170 KQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 245 (448)
Q Consensus 170 ~e~~~l~~el~~le~e~~----~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~h 245 (448)
...+.+.+.+..+-.... .+-.-|++|-+++..++.++..++...+.+++++++.+.+++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 666666665555433222 245678888888888888887777777777777777666665 2222211
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 013164 246 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 288 (448)
Q Consensus 246 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 288 (448)
.+++ +| .--+..|-.++.|-.--+..+.+++
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 2568889999998888887777654
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.09 E-value=4.4 Score=41.75 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=89.2
Q ss_pred ccchHHHHHHHHHhhcCCcccCCcc-hHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccc---c---
Q 013164 77 FHSTITVLKRAFEIATSQTQVEQPL-CLECMR---VLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---D--- 140 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~s~iDhPL-C~eC~d---~Lle~Ld~qle~------~~~E~~~Y~~fL~~L~~~~~---~--- 140 (448)
|..+|.-=.++|.=+...+.++.|. =.|=+. -....|+.|+.- ++....=|.-=.+-+++-.. .
T Consensus 75 L~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~ 154 (312)
T smart00787 75 LKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788998888888888854 444332 123334444443 34444446644443332110 0
Q ss_pred cC-CH-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013164 141 VL-SE-ADFLK-------EKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQFQL 207 (448)
Q Consensus 141 ~~-~e-e~l~~-------e~~~Le~EE~~L~~eL~~lE~e~~~l~~----el~~le~e~~~l~~eE~~~w~e~n~~q~ql 207 (448)
.+ .+ +-+.+ -+-.+.+....|..++..|.+-..+++. ++..++.++..++.+-...-+....++.++
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 01111 1122344444555555555555555432 666666666666666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 208 IAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 208 ~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.+.........++..-.+.++..+++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.99 E-value=1 Score=42.33 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIE 125 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~ 125 (448)
.+-.+++..++.+.++++
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355677777777777764
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.97 E-value=2.9 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
|+.+++...+|+..-..-...|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le 163 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLE 163 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444444444
No 32
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.89 E-value=3 Score=40.93 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
++.+..+....++.+|....+++.+|..+....+.++..+.++-.-...+.-++..+...+..+..+++.+...+.+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666666666555555655555555555555555555566666666666666655555544
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=93.86 E-value=2.3 Score=48.51 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.0
Q ss_pred CCcccCCc
Q 013164 93 SQTQVEQP 100 (448)
Q Consensus 93 ~~s~iDhP 100 (448)
.|.+++.+
T Consensus 133 ~Qg~~~~~ 140 (880)
T PRK03918 133 RQGEIDAI 140 (880)
T ss_pred eccchHHH
Confidence 35555554
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.85 E-value=5.5 Score=37.20 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
..++++..+.+|.+.....+..+..+- .++......+.++.+...+++..++...+.+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444433211 112222222334444444455555555555555555444
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.81 E-value=2.3 Score=50.44 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013164 163 AAIEETEKQNAEVNAELKELELKSKRFKELEERYW---QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 239 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w---~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd 239 (448)
+.|++|-+..+.|+++|.++.+. |-++|...= ...+.-..+|..+|.+.+.|..-+.....|+++|+..||+..
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~---L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTED---LPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence 34444555555555554444433 333333333 333444578888899999999999999999999999998765
Q ss_pred ceeeee
Q 013164 240 AFPIWH 245 (448)
Q Consensus 240 ~F~I~h 245 (448)
.=-|.|
T Consensus 1302 ~~~~r~ 1307 (1758)
T KOG0994|consen 1302 FNSTRH 1307 (1758)
T ss_pred HHHHHH
Confidence 434444
No 36
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.76 E-value=6.7 Score=37.85 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
||..|+.++.+..+.......-+..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~ 54 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555444444444443
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=93.74 E-value=2.5 Score=48.37 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.5
Q ss_pred CCCceEE
Q 013164 302 GSYPRIM 308 (448)
Q Consensus 302 GS~SkI~ 308 (448)
|.|+.|.
T Consensus 754 ~~~~~i~ 760 (880)
T PRK02224 754 DAYSHIE 760 (880)
T ss_pred CCeeEEE
Confidence 4455554
No 38
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.65 E-value=3 Score=45.56 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 228 (448)
+++...-+|..+..+++..|+.+...++.+++.+..|.+.+++.=..|-..-..++.++.+.+|+-......++-++..|
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL 298 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555444444444334444444455556666666666777788888999
Q ss_pred HHHhhcccCCCceeeeec
Q 013164 229 ELLKRTNVLNDAFPIWHD 246 (448)
Q Consensus 229 d~L~ktNv~nd~F~I~hd 246 (448)
..|+.+...+....=.|+
T Consensus 299 k~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 299 KCLRSCDAPKLISQEALS 316 (596)
T ss_pred HhhccCCCcchhHHHHHH
Confidence 999999888876654443
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.62 E-value=1.6 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
++.++...+.+.+.|...+..++.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444444444444443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.61 E-value=3.4 Score=49.36 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 102 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 102 C~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~ 132 (448)
|..| +.++..++.+++.+.++++.-.+|.+
T Consensus 188 l~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 188 LERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4453 44566688888888888887666664
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=93.54 E-value=1.9 Score=49.35 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 207 LIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
+.+.+++...+...+......++.|...
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.34 E-value=5.2 Score=44.28 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 208 IAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 208 ~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
..+.+++..+..+++.++.+...|++
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~ 311 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRK 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444444
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.31 E-value=8.5 Score=37.74 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 228 (448)
..+...+.--..+...+.+|+.+...+...|+.++.......+.|..|=..+..+..++.+.....+..+.+.......+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666777777777777777777777666666666666666666666666666655555555555555555
Q ss_pred HHH
Q 013164 229 ELL 231 (448)
Q Consensus 229 d~L 231 (448)
+.|
T Consensus 207 d~l 209 (237)
T PF00261_consen 207 DRL 209 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.14 E-value=2.5 Score=41.18 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
..+..|++|++.++.+.+.-..-.+.. ..++...+...+....+|.++..+|.++.+.+.+++..++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777765554433221110 12233333334444444555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 013164 188 RFKELEERYW 197 (448)
Q Consensus 188 ~l~~eE~~~w 197 (448)
.+++.+..-|
T Consensus 164 ~~~~~~~~~w 173 (206)
T PRK10884 164 DKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 45
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=4.1 Score=45.41 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~-~~w~--e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
.+++.+++..-++|..+...|+.+.+++++++..|+.+...+...++ ..|. ++...+.....++.++..-...++..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666665543322 3332 22333333333333333333344444
Q ss_pred HHHHHHHhhccc
Q 013164 225 QAHLELLKRTNV 236 (448)
Q Consensus 225 ~~~Ld~L~ktNv 236 (448)
...|.+|++.+-
T Consensus 501 ~~~l~~l~k~~~ 512 (652)
T COG2433 501 ERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.08 E-value=3.7 Score=42.20 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013164 212 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGr 259 (448)
+++..+..++..++.+++.++.. .-+.+-.=-.||.+.+++-...|.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~-l~~~~i~AP~dG~V~~~~~~~~G~ 292 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDR-LQRLIIRSPVDGTVQSLKVHTVGG 292 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcEEECCCCcEEEEEEEEccCc
Confidence 33445555666666666554431 111112223467776666555565
No 47
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.06 E-value=3.7 Score=50.45 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=5.1
Q ss_pred cCCCCCCCC
Q 013164 440 SVGRNLSKP 448 (448)
Q Consensus 440 ~~~~~~~~~ 448 (448)
-.||+|+.|
T Consensus 769 r~s~~p~~p 777 (1486)
T PRK04863 769 RYSRFPEVP 777 (1486)
T ss_pred hhccCCCcc
Confidence 455666655
No 48
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=6.7 Score=43.45 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDV 120 (448)
Q Consensus 109 Lle~Ld~qle~~ 120 (448)
|.-.+.+.+...
T Consensus 222 lk~~l~~~~~~i 233 (581)
T KOG0995|consen 222 LKHRLEKYFTSI 233 (581)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 49
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.87 E-value=0.66 Score=45.87 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
++...++.+.+|...|..+++++|.+.++++..|+.++.|...|++.=+..--++..++..+.++.+.....+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 3444455667788889999999999999999999999999988887777777788888887777766654443
No 50
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.84 E-value=7.8 Score=35.73 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 193 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE 193 (448)
..++..+-.+.+.|..+|..+-+++..+.+++...+.+...|+...
T Consensus 58 ~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 58 EEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555666666666666666666666655555555443
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.80 E-value=4.1 Score=40.32 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 013164 333 MTLFLSCLKDFA 344 (448)
Q Consensus 333 M~afL~cl~q~~ 344 (448)
|..=+.|-+||.
T Consensus 194 MK~C~sC~qqIH 205 (230)
T PF10146_consen 194 MKTCQSCHQQIH 205 (230)
T ss_pred cchhHhHHHHHh
Confidence 888888888884
No 52
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.80 E-value=9.6 Score=39.16 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQR 133 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~ 133 (448)
..++.++..+..+...+..+++.
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~~ 106 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEADS 106 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666665555555555543
No 53
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.72 E-value=7 Score=37.40 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
...+..++..|+++..++..++.+++.+.+.++..+++. .+..-..+++|.+-++.+.....++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666665555444333211 1122233455555555555555555543
No 54
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.56 E-value=6.3 Score=41.98 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+|..+|..|-.++.+++++..+|..+.++|
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 55
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.52 E-value=9.4 Score=36.75 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 222 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 222 (448)
+|.+..+++..|.+++.+...+...=+..+.+.+.++-......++...++.+++
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333344556666666555555555555554444
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.46 E-value=3.4 Score=45.62 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHHh----hcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 77 FHSTITVLKRAFEI----ATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 77 ls~~i~~l~~lFdI----lS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
+...|..+.+-..= |. ..+++. ..+=.+.+-+.+|.=++..++|..++....+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~-~l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLE-ELDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666665544322 22 223433 666677788888888888888888877655543
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.45 E-value=9.3 Score=39.26 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
+.|.+.|+..++.+..|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665554
No 58
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.19 E-value=6.5 Score=46.41 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=75.8
Q ss_pred hhcCCcccCCcchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHH
Q 013164 90 IATSQTQVEQPLCLECMRV---LSDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAI 165 (448)
Q Consensus 90 IlS~~s~iDhPLC~eC~d~---Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL 165 (448)
+..++...--.+-+|=... ..+.+..++++.+.|.+++..-++.+...-.. ......+.+++.+++.....-..++
T Consensus 420 l~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el 499 (1041)
T KOG0243|consen 420 LAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKEL 499 (1041)
T ss_pred HHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444422 24455556666666666666666655432110 0011334455555666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 222 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 222 (448)
+.++.+..++...|+.-+.-..+++..|...-+.-..++..+...+++..++-.+++
T Consensus 500 ~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 500 ESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777666666556666666666666667777777777777766654443
No 59
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.13 E-value=7.9 Score=37.33 Aligned_cols=14 Identities=7% Similarity=0.482 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEA 126 (448)
Q Consensus 113 Ld~qle~~~~E~~~ 126 (448)
++.+++++..|...
T Consensus 24 lq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 24 LQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 60
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.08 E-value=5.9 Score=42.30 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
.++.++..++.+...|+..++.+++
T Consensus 176 ~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 176 QLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555566666665555544
No 61
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.94 E-value=13 Score=41.23 Aligned_cols=32 Identities=9% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 138 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~ 138 (448)
..-++-|.+....++.|..-|+.++..++...
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 34567788888889999999999998876543
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.93 E-value=9 Score=42.48 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.3
Q ss_pred CCCccchHHHHHHHHHh
Q 013164 74 NSGFHSTITVLKRAFEI 90 (448)
Q Consensus 74 ~~~ls~~i~~l~~lFdI 90 (448)
|..|...|+.+...|..
T Consensus 65 N~~L~~di~~lr~~~~~ 81 (546)
T KOG0977|consen 65 NRKLEHDINLLRGVVGR 81 (546)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 34445555555554433
No 63
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.83 E-value=11 Score=36.11 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc----cccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRL---EGEA----RDVLSEADFLKEKLKIEEEERK----------LEAAIEETE 169 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L---~~~~----~~~~~ee~l~~e~~~Le~EE~~----------L~~eL~~lE 169 (448)
..|+..|+.++.+-.+-|..+..-+..- .... .+.....++..-+.+|++|..+ |..+|++.-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888777777777666211 1000 0001123444445555555444 666777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 170 KQNAEVNAELKELELKSKR 188 (448)
Q Consensus 170 ~e~~~l~~el~~le~e~~~ 188 (448)
.....|..+|..+..+...
T Consensus 95 ~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888777655444
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.81 E-value=10 Score=34.76 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 204 QFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 204 q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
.++...+..+++..+.+|+-...++..+
T Consensus 114 eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 114 ERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555444
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.73 E-value=4.3 Score=39.52 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
.+.+++.|..++.++|.++..+..+..+ +++.+..+.+.+. ++++.+..++.+++..+.++.+.+..+++
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~---~l~~~~~~~~~~~-------~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTA---EMQQKVAQSDSVI-------NGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544332222 2222222233222 22333333344444445555555555666
Q ss_pred HHhhcc
Q 013164 230 LLKRTN 235 (448)
Q Consensus 230 ~L~ktN 235 (448)
.+++..
T Consensus 164 ~~~~~~ 169 (206)
T PRK10884 164 DKQRTI 169 (206)
T ss_pred HHHHHH
Confidence 666644
No 66
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.71 E-value=5.3 Score=41.43 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 106 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 106 ~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~-----~~~~-ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 179 (448)
-..-++.|.+++.+++.|++.+..-+.+.+.... ..++ .+++..+++++......|+.++..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999988877653321 1122 255667777777777778888888888888888877
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 180 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 180 ~~le~e~~~l~~eE~--------------~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
...+.+..+|+.+=. ...-+-.-++-++...++|...+...+.-=..-|++
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777643311 011122223345777777877777655555555664
No 67
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=7.1 Score=43.30 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 176 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 176 (448)
+..|++..+.-|.+|..+..+||.|.--+.
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445666667777777777777766654433
No 68
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.67 E-value=5.5 Score=35.71 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 138 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~ 138 (448)
-.+++.|..++...+.|+..++.-+.+|..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998887653
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.63 E-value=1.4 Score=42.01 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQR 133 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~ 133 (448)
+-.+..++.++.+.+.....-|..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 344666666666666555444443
No 70
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=91.45 E-value=5.9 Score=39.60 Aligned_cols=103 Identities=26% Similarity=0.389 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEK-QNAEVNAELKELELKSKRFK---ELE----ERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~-e~~~l~~el~~le~e~~~l~---~eE----~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
+.+..|+++--.+-+.|..++..+++ +..-+..+++.|..+..+++ ++. ..|=.+.+.+|..+..++
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~----- 234 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQ----- 234 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 45666776655666667777766654 44557777777766666553 222 233333444444444444
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHH
Q 013164 217 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 274 (448)
Q Consensus 217 l~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 274 (448)
.+|+.|+. -++.-|-.+.|-. |+ .++|+-.|||-||
T Consensus 235 ---------~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 235 ---------TELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ---------HHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 44444432 2455677777743 22 3678999999998
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.44 E-value=4.8 Score=49.50 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
...++|.-++.+.+.++..++.++..+...++.+++.
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777777666654
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.35 E-value=11 Score=38.87 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~-~eE~~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
|...|..|+++...+..++..|..|.-+|+ .+|.+==..+|.+..+...+..+...|
T Consensus 140 L~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 140 LQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333332 222222234455555554444444333
No 73
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.22 E-value=8.1 Score=39.84 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
.|-++-+++.++--.|..-|+.+..... .++..++.....++++........|++++++.+.+..++...+..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888898999999988875442 366677777777777777777777777777777777777655544
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.20 E-value=13 Score=36.92 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 214 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~ 214 (448)
+.+.|..|+....++|+.+...+..|+..=++-|.+.+..+.....+.+|.
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444455554444444443333
No 75
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=91.19 E-value=0.084 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.7
Q ss_pred ccchHHHHHHHHHhhcCC
Q 013164 77 FHSTITVLKRAFEIATSQ 94 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~ 94 (448)
+|+|+++...+|||+|++
T Consensus 8 ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 8 LSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHCCTT--
T ss_pred cchhheecccccccccCC
Confidence 899999999999999985
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.19 E-value=7.1 Score=43.68 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
|+. ++.+..+.+.|..-.++ +. ...++.+++.+++.+.+++..+++.++.+...+++++..++.+..
T Consensus 181 l~~-~~~L~~dl~~~~~~~~~---~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 181 LDL-IDRLAGDLTNVLRRRKK---SE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred cHH-HHHHHHHHHHHHHHHHh---cc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 55566666665443221 11 112344455555555555555555555555555555555544433
No 77
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.86 E-value=5.6 Score=39.15 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le 183 (448)
+.++++.|+.+.+....+++.++
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 78
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.86 E-value=0.98 Score=39.67 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.2
Q ss_pred cCCCceeeeecCCeee
Q 013164 236 VLNDAFPIWHDGEFGT 251 (448)
Q Consensus 236 v~nd~F~I~hdG~fGT 251 (448)
+|++=|||.| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999987 66765
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.82 E-value=19 Score=36.06 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
+..|...+...+..|+.+...+......|+... .+.|.+|=.+...++..+..++.++..+..++.........|
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l---~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQL---RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhH---HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444332 233333444444455555555555555555544444443333
No 80
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.79 E-value=22 Score=40.77 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhcCC
Q 013164 81 ITVLKRAFEIATSQ 94 (448)
Q Consensus 81 i~~l~~lFdIlS~~ 94 (448)
...+.+.+++|..+
T Consensus 538 l~lL~~a~~vlree 551 (717)
T PF10168_consen 538 LELLSQATKVLREE 551 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 35556666666543
No 81
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.75 E-value=14 Score=37.70 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~----~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
|++|+.|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|....+.+|+.+..+..++.--+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 677888888888888775555554432 11110 1111222334444455555555555555555443322221
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013164 186 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 239 (448)
Q Consensus 186 ~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd 239 (448)
.+|-+.-++.......+.|+..+.....+|++.+..+.-.+
T Consensus 96 -------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 96 -------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23333444444444555666666777777888877776433
No 82
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.75 E-value=5.4 Score=45.42 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
...+||.|...|+.||+..+++...+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444333
No 83
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.65 E-value=5.6 Score=48.18 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=5.0
Q ss_pred eccccC
Q 013164 252 INNFRL 257 (448)
Q Consensus 252 INGlRL 257 (448)
|.++|+
T Consensus 1159 ~~~i~~ 1164 (1311)
T TIGR00606 1159 IEYIEI 1164 (1311)
T ss_pred HHHhhc
Confidence 788888
No 84
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=12 Score=44.69 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=14.0
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 013164 326 STRYDKAMTLFLSCLKDFAE 345 (448)
Q Consensus 326 ~~kFD~AM~afL~cl~q~~~ 345 (448)
.+|||.-|.+|--+-.-+.+
T Consensus 1134 k~RldEFm~gf~~Is~kLke 1153 (1293)
T KOG0996|consen 1134 KRRLDEFMAGFNIISMKLKE 1153 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999998776443333
No 85
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.58 E-value=5.8 Score=46.51 Aligned_cols=174 Identities=21% Similarity=0.319 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~-------~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
+.+..++..++.+..+...++++++.... +++++...+..+..++...-+..|++-+.++..+.. +
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~-------~ 486 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIAN-------L 486 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 34555666666666666666665555544 455555555666666666667889988887766544 4
Q ss_pred HHHHHHHHHHHHHHhhcccCCCceeee-------ecCCeeeeccccC-------------C-CCCCCCCChHHHHHHHHH
Q 013164 218 SSKIEVSQAHLELLKRTNVLNDAFPIW-------HDGEFGTINNFRL-------------G-RLPKIPVEWDEINAAWGQ 276 (448)
Q Consensus 218 ~~q~~~~~~~Ld~L~ktNv~nd~F~I~-------hdG~fGTINGlRL-------------G-rlp~~~V~W~EINAAwGQ 276 (448)
+.-+..++.+|...-..+|+|-.=.|. ..|.|||.-.|== | +|=++-|+=+||-
T Consensus 487 ~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevA----- 561 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVA----- 561 (1200)
T ss_pred HHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHH-----
Confidence 445566666677666666666432211 4677777533210 0 1223567888873
Q ss_pred HHHHHHHHHhhcCCCCCCceeeeecCC--CceEEec-CCceeecccCCCCcccccchHHHHHHH
Q 013164 277 ACLLLHTMCQYFRPKFPYRIKIIPMGS--YPRIMDS-NNNTYELFGPVNLFWSTRYDKAMTLFL 337 (448)
Q Consensus 277 ~~LLL~tla~~l~~~f~~~y~LvPmGS--~SkI~~~-~~~~~~Lyg~~~lf~~~kFD~AM~afL 337 (448)
...|..+- ++ ++. +..+.|+-- .+.+.-. +.+..||-. .+=...+||+|+.+..
T Consensus 562 -TkIl~~~n-~m--~~G-rVTF~PLNrl~~r~v~yp~~sdaiPli~--kl~y~p~fdka~k~Vf 618 (1200)
T KOG0964|consen 562 -TKILRKLN-KM--KGG-RVTFMPLNRLKARDVEYPKDSDAIPLIS--KLRYEPQFDKALKHVF 618 (1200)
T ss_pred -HHHHHHHH-hc--cCC-eeEEeecccCchhhccCCCCCCccchHH--HhCcchhhHHHHHHHh
Confidence 23333332 33 444 788889973 3222211 222344432 1224678999887654
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.49 E-value=9 Score=42.34 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 220 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q 220 (448)
++..++.+-..+...+.........+..++.++..+...++.+...++...+.+...-.+..+....+..+
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333443333334455555555555555555555555665555555544444444433333
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.42 E-value=22 Score=36.86 Aligned_cols=58 Identities=33% Similarity=0.521 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---CC-HH-----HHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV---LS-EA-----DFLKEKLKIEEEERKLEAAIE 166 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~---~~-ee-----~l~~e~~~Le~EE~~L~~eL~ 166 (448)
++..|.++++.+++|...|...|.+|..++.+. +. +. -+.+...+|+.|.+.|...|.
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566777888888888888888888877654221 10 11 134555566777666666654
No 88
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.40 E-value=13 Score=33.39 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+...+..++-|...+..++..+++++..+.+||..+-.+..++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666655444443
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.08 E-value=16 Score=44.36 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
+++..++..++.+.+.+..++..+..+.+.+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555
No 90
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.04 E-value=12 Score=47.19 Aligned_cols=15 Identities=33% Similarity=0.262 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHH
Q 013164 328 RYDKAMTLFLSCLKD 342 (448)
Q Consensus 328 kFD~AM~afL~cl~q 342 (448)
+++++..+-|.-++.
T Consensus 1238 ~~~k~~E~~l~elq~ 1252 (1930)
T KOG0161|consen 1238 KKDKKLEAQLSELQL 1252 (1930)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555544444433
No 91
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.04 E-value=9.6 Score=41.91 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
...|-+.|...|+..|++++.+..||+.+......|+ ++.-....+++-|+..+-|-+.+++.++.....+++.|+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq---DEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ---DELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667777777777777777777777766555554 3344666778888999999999999999999999999985
Q ss_pred c
Q 013164 234 T 234 (448)
Q Consensus 234 t 234 (448)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 3
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.02 E-value=22 Score=35.57 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 196 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 196 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
...+.+.+..++....-.+..++++++..+.+|+.|++
T Consensus 101 le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 101 LEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444555555555555555543
No 93
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.83 E-value=12 Score=39.31 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 98 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 177 (448)
Q Consensus 98 DhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~ 177 (448)
|--...|.|..+...+...+.++ ...|++|. .++.+-+++++.-|+-+-.+++.+-.+...+.+
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~-------~~~L~kl~---------~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPET-------KSQLDKLQ---------QDISKTLEKIESREKYINNQLEPLIQEYRSAQD 280 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44445555555554444444433 44555544 234556677777777777778777777777777
Q ss_pred HHHHHHHHHHHHH
Q 013164 178 ELKELELKSKRFK 190 (448)
Q Consensus 178 el~~le~e~~~l~ 190 (448)
++.+++.+.++..
T Consensus 281 ~ls~~~~~y~~~s 293 (359)
T PF10498_consen 281 ELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776665554
No 94
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.79 E-value=4.1 Score=37.76 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 102 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 171 (448)
Q Consensus 102 C~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~---~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e 171 (448)
+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++...+..|+.|...+...|..|...
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555556666666666666666665555554332 124667777777777777777777777776653
No 95
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.62 E-value=20 Score=40.94 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013164 86 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 138 (448)
Q Consensus 86 ~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~ 138 (448)
+.|-.-+..+.| .|+-.|-...+.. +++.+..+.+|||+..+-.+.|+++.
T Consensus 389 e~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 389 EDLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444554443 4777787777765 89999999999999999888777543
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.58 E-value=19 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.+++.+...++.+++.|+.+...++
T Consensus 953 ~k~~~Ek~~~e~~~~~l~~e~~~~~ 977 (1930)
T KOG0161|consen 953 QKLELEKNAAENKLKNLEEEINSLD 977 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 97
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.48 E-value=25 Score=36.65 Aligned_cols=167 Identities=13% Similarity=0.226 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cc---------c--c-C---CHHHH-------HHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR---------D--V-L---SEADF-------LKEKLKIEEEERKLE 162 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~-------~~---------~--~-~---~ee~l-------~~e~~~Le~EE~~L~ 162 (448)
.|-++++....|+|.|..-.+.|... .. . . . ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888666655421 00 0 0 0 00112 233445666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELEL------------KSKR-FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~------------e~~~-l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
+.|.+++.+..-+...+...+. +.+. +.++| ..+..+..+++++....||...+....++-+...+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE-k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE-KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666655555431 1111 22332 35555666666666666666666666666666666
Q ss_pred HHhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 013164 230 LLKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 288 (448)
Q Consensus 230 ~L~ktNv~nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 288 (448)
||..- ..+| +++..+..|.+|-+=- ..==..|+.+-...-|+..+|.+|-
T Consensus 172 RLN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 172 RLNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66321 1111 0111222333332210 1112358888888999999998763
No 98
>PRK09039 hypothetical protein; Validated
Probab=89.48 E-value=19 Score=37.54 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEA 129 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~ 129 (448)
-+..+..+++.+++++..-+.
T Consensus 82 ~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 82 SVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554333
No 99
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=6.9 Score=43.72 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR--FKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~--l~~eE~-~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
.+..++|+.|-..|..++++++++.+.|++++..+..+... ....|- ..=+..+.++.+|.+-....+.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777777777666666666544331 111111 122456678888888888888887777665
Q ss_pred H
Q 013164 225 Q 225 (448)
Q Consensus 225 ~ 225 (448)
.
T Consensus 508 ~ 508 (652)
T COG2433 508 R 508 (652)
T ss_pred H
Confidence 5
No 100
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.47 E-value=18 Score=35.03 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCc-----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 83 VLKRAFEIATSQT-----QVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA 129 (448)
Q Consensus 83 ~l~~lFdIlS~~s-----~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~ 129 (448)
.+++|++|+.++- .+..|. .=.+.++..|+..+..+.........
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665421 122343 24566666677666666555444433
No 101
>PRK01156 chromosome segregation protein; Provisional
Probab=89.46 E-value=13 Score=42.91 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
++.....+..+..+...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677777788888877777777777775
No 102
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.38 E-value=9.6 Score=36.24 Aligned_cols=10 Identities=30% Similarity=0.275 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 013164 207 LIAHQEERDA 216 (448)
Q Consensus 207 l~~~~~e~~s 216 (448)
+..++.|...
T Consensus 167 ~~~l~~En~~ 176 (194)
T PF08614_consen 167 LRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=89.35 E-value=14 Score=42.55 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013164 102 CLECMRVLSDKLDKEVDDV 120 (448)
Q Consensus 102 C~eC~d~Lle~Ld~qle~~ 120 (448)
|.++....+..++.+++..
T Consensus 167 ~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443
No 104
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.33 E-value=21 Score=40.83 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
...+..|+.+++.+..|...=+..-+.|+.+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444577777777777777766665555544
No 105
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.96 E-value=17 Score=32.61 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
.....++.++.+....++.|..|-...-+||+.|
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345566666677777777777777777777655
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.81 E-value=27 Score=37.47 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.9
Q ss_pred hhHHHHHHHHhhCC
Q 013164 397 CNLKWALFWFVGNT 410 (448)
Q Consensus 397 tNlKwllaw~~~~t 410 (448)
..|-||+---..++
T Consensus 453 ~~f~~~lR~qad~P 466 (499)
T COG4372 453 STFGWCLRSQADTP 466 (499)
T ss_pred hhHHHHHHHhcCCc
Confidence 44666665333333
No 107
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.61 E-value=21 Score=36.30 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELL 231 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~---~q~~~~~~~Ld~L 231 (448)
+.+...++.....|+.+..++.-|+..++. +++.+--+|++....+..++.......+++. ..++++...|++-
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 334444444444455544444444333332 2333334566666666666555444444443 3566677777777
Q ss_pred hhcccCC
Q 013164 232 KRTNVLN 238 (448)
Q Consensus 232 ~ktNv~n 238 (448)
++--+|.
T Consensus 128 kRati~s 134 (333)
T KOG1853|consen 128 KRATIYS 134 (333)
T ss_pred hhhhhhh
Confidence 7766554
No 108
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.59 E-value=22 Score=33.47 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~--------l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 211 (448)
..++.++|+..++.....|-++.+.... .=.+-..++.++.-+.+.|.+.-.-++.++..+..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677666666665544421 1122233344444455666666666666665544433
No 109
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.44 E-value=4.2 Score=45.14 Aligned_cols=84 Identities=27% Similarity=0.310 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 240 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~ 240 (448)
...||.++|..++++..||+++..++++++++ +...|-|+.+|+..++.++.+++.|+.+|--.-.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~--------------i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRL--------------IPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 34577778888888888888777666655433 4444556778899999999999999999998888
Q ss_pred eeeee--------cCCeeeeccccCC
Q 013164 241 FPIWH--------DGEFGTINNFRLG 258 (448)
Q Consensus 241 F~I~h--------dG~fGTINGlRLG 258 (448)
..|+- -.+-..|-+.||-
T Consensus 157 LP~sllP~~~pr~l~pp~~~~~c~lh 182 (907)
T KOG2264|consen 157 LPFSLLPLQIPRELEPPSQISPCQLH 182 (907)
T ss_pred eccccCcccCcccCCCccccCcccch
Confidence 77772 1344566666664
No 110
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=36 Score=35.81 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 121 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 121 ~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
++|.+.+..-...|+. .++++..-..+|+.+++.|++++..|.++.+-|..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444444444432 234555555666666667777766666666655544333
No 111
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=88.14 E-value=18 Score=41.96 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=73.7
Q ss_pred HHHHHHhhcCCcccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhccccccCCHHHHHH--
Q 013164 84 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEAY----------EACLQRLEGEARDVLSEADFLK-- 149 (448)
Q Consensus 84 l~~lFdIlS~~s~iDhP--LC~eC~d~Lle~Ld~qle~~~~E~~~Y----------~~fL~~L~~~~~~~~~ee~l~~-- 149 (448)
|+.+...||.--.+-+| .|.+-.......+..=+..+.+|.+.- ...++++..+. +.++..+
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~r----e~Eea~~q~ 596 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVER----EAEEAQEQA 596 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHH
Confidence 45566667766666677 488777766666655555555555442 22333322111 1111111
Q ss_pred -H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHHHHH
Q 013164 150 -E-KLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELE-------------ERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 150 -e-~~~Le~EE~~L~~eL~~lE~e~~~l~~e---l~~le~e~~~l~~eE-------------~~~w~e~n~~q~ql~~~~ 211 (448)
+ .+.-+.|+++|.+++.+=|+++...+.+ .+.+++....+.+-| -+-..--.-.+.+..+++
T Consensus 597 ~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~ 676 (988)
T KOG2072|consen 597 KEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELE 676 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHH
Confidence 1 1112456666666666555544433332 122222222221111 011111122356777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 013164 212 EERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.++..++.++++....+|.+.+
T Consensus 677 Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 677 KERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 8888888888888877776655
No 112
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.11 E-value=20 Score=43.84 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.9
Q ss_pred EEecCCCCchhhHHHHHHHhhHHHHHHHHhhCCc
Q 013164 378 ITQSFNKQENWTKALKYTLCNLKWALFWFVGNTN 411 (448)
Q Consensus 378 I~l~~n~~e~WTkAlK~lLtNlKwllaw~~~~t~ 411 (448)
+.+.-+-++.|--++-=-|+..--|=|||+-.-.
T Consensus 608 ~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 608 VDFADDVPADVRAGLEAALEAAGLLDAWVTADGT 641 (1353)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcc
Confidence 3344445789999999999999999999985433
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.07 E-value=29 Score=37.22 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 199 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 199 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.+...+.++..++.+.+.....|+.....++..+-
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777766553
No 114
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.03 E-value=27 Score=38.33 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=14.2
Q ss_pred CCCccchHHHHHHHHHhhcCCcccCCcchHH
Q 013164 74 NSGFHSTITVLKRAFEIATSQTQVEQPLCLE 104 (448)
Q Consensus 74 ~~~ls~~i~~l~~lFdIlS~~s~iDhPLC~e 104 (448)
+-+|++|+. ..+..||- +..||.|.+
T Consensus 153 ~f~F~~r~E--~eV~~~lK---nL~YPfl~s 178 (622)
T COG5185 153 GFGFTKRIE--NEVYQILK---NLRYPFLES 178 (622)
T ss_pred CCCcchhhH--HHHHHHHH---hcCCchhhh
Confidence 344555554 34455553 367888874
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.92 E-value=30 Score=39.78 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SE-------ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~-~e-------e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
.|+.++.++..+...+..-.++|.....+.. +- ..+.++++.++.-|.+|.+...+||.|.-.+..++..|
T Consensus 38 ~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 38 ELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555443211000 00 11344555555566666666666666665555544443
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.64 E-value=18 Score=38.92 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
+.|+++.+++.++.....--.++..+..- ....+.+.+.+.+.|.|.++|.+|..++-.++-+.+.+-+-+.......+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766665544433333332100 00112233344444555555555555555444443333333333333444
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 191 ELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 191 ~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
.++-++..+...++.|..++.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 4455566666666666555555444444
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.63 E-value=22 Score=32.54 Aligned_cols=7 Identities=29% Similarity=0.435 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013164 114 DKEVDDV 120 (448)
Q Consensus 114 d~qle~~ 120 (448)
..+.+.+
T Consensus 6 k~E~d~a 12 (143)
T PF12718_consen 6 KLEADNA 12 (143)
T ss_pred HHhHHHH
Confidence 3333333
No 118
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=21 Score=39.82 Aligned_cols=63 Identities=22% Similarity=0.369 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 213 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~--------------l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e 213 (448)
+.+|+.|.+.++++|.....|++. ++.+...|..++++++..|.+...+|+.+.-+-+.+|..
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344566666666666555444443 445556677788888888888999998887654444443
No 119
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.44 E-value=28 Score=33.38 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 177 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 177 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 228 (448)
.++..++.....+.....++-..+..++.++.++..++..+.++...++.+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555666667777777777777777766665443
No 120
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.24 E-value=28 Score=37.83 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 212 EERDAISSKIEVSQAHLE 229 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld 229 (448)
+.+.+...++.-.+.||.
T Consensus 428 ~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555554443
No 121
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.18 E-value=16 Score=36.32 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 192 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e 192 (448)
+.+..+|..+....+.++..|.+++.+++.++..|.+.
T Consensus 60 ee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 60 EEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444445555555555555555555433
No 122
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.04 E-value=8.7 Score=41.83 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRFKELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE-~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
+++.++..|+++.+.+.+|-+.|+++...++..= ...=.+..+++.+..++++++..+..+++..+.+|+-+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444444443333332211 11112233444455555566666666666666666543
No 123
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.92 E-value=22 Score=42.00 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013164 195 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 236 (448)
Q Consensus 195 ~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv 236 (448)
...++.+...+....+..+...+...-..+...+++|.+-+-
T Consensus 896 ~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 896 KCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred HHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 344444444444444444554444444455555666655443
No 124
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.73 E-value=11 Score=37.25 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 206 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 206 (448)
+|..++.++...|+.++++.+++.+..+.+-.+++.+.+.++.+=.+.-.+++.+|-+
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444443333334445555444
No 125
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.55 E-value=37 Score=38.70 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
+=+...++.|++|+..+.++.+.-+.-|+..+.+
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777766666655543
No 126
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.49 E-value=24 Score=38.10 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013164 207 LIAHQEERDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
|..|+.++.+...-++-...+|++|+..-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777777777888887753
No 127
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.48 E-value=27 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.8
Q ss_pred HHHHHHhhHHHHHHHHhhC
Q 013164 391 ALKYTLCNLKWALFWFVGN 409 (448)
Q Consensus 391 AlK~lLtNlKwllaw~~~~ 409 (448)
-||-=|-=|+-++.|+++.
T Consensus 488 ~mk~kl~elq~lv~~l~~~ 506 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLVGD 506 (617)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5676677777788888853
No 128
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.42 E-value=48 Score=37.19 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.+++..++.+..++..++..++.+...+..++..++.+..++.
T Consensus 427 ~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 427 LEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666665555443
No 129
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.32 E-value=54 Score=38.45 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
|.++...|.....+..++.+..+.-+.+++++..+|++.=++.=++.........+..+..++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555544433444444444445555556666777778888888899988
Q ss_pred c
Q 013164 234 T 234 (448)
Q Consensus 234 t 234 (448)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 8
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.20 E-value=29 Score=41.10 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCCCceeeeCCccceeeEEecCCCCchhhHHHHHH
Q 013164 361 CFKLPYKIENDKVENYSITQSFNKQENWTKALKYT 395 (448)
Q Consensus 361 ~~~LPY~I~~dkI~g~SI~l~~n~~e~WTkAlK~l 395 (448)
.+.+|- .++-.+|+-|++.|+. -|...|--|
T Consensus 1053 kL~Ppe--g~~~~dGLEvkV~~G~--iWKeSL~EL 1083 (1174)
T KOG0933|consen 1053 KLEPPE--GKTVLDGLEVKVKFGG--IWKESLSEL 1083 (1174)
T ss_pred cccCCC--CCccccceEEEEEeCc--cHHHHHHHh
Confidence 355662 3556789999998885 798877433
No 131
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=85.92 E-value=15 Score=42.36 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=15.6
Q ss_pred CCCCCccchHHHHHHHHHhhcC
Q 013164 72 PNNSGFHSTITVLKRAFEIATS 93 (448)
Q Consensus 72 ~~~~~ls~~i~~l~~lFdIlS~ 93 (448)
.+-++||..+..+..+...++.
T Consensus 386 ~~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred hchhHHHHHHHHHHHHHHhCCc
Confidence 3456788888888887766643
No 132
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=85.78 E-value=46 Score=34.29 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEKQ-------NAEV 175 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~-ee~---l~~e~~~Le~EE~~L~~eL~~lE~e-------~~~l 175 (448)
..-++.+++|++.++++...-+.-|...+.... .++ +.. ....+..|+.+..+++.++.++... ...+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l 247 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSL 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHH
Confidence 445556666666666666555555555443321 112 111 1223344555555555555444321 1223
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 013164 176 NAELKELELKSKRFKEL-EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 254 (448)
Q Consensus 176 ~~el~~le~e~~~l~~e-E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTING 254 (448)
++++..++.++.+.... ....=...+....++.+++.+.+..+..|+.+...++.++-.--. ...++. .|-
T Consensus 248 ~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~-~~~~~~------vi~- 319 (362)
T TIGR01010 248 QARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR-QQLYLE------VIS- 319 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeee------eee-
Confidence 33444444333222110 000012456667777788888888888888888888777722211 111211 111
Q ss_pred ccCCCCCCCCC-ChHHHHHHHHHHHHHH
Q 013164 255 FRLGRLPKIPV-EWDEINAAWGQACLLL 281 (448)
Q Consensus 255 lRLGrlp~~~V-~W~EINAAwGQ~~LLL 281 (448)
--.+|..|+ |+.=.|.+.|-++.|+
T Consensus 320 --~p~~P~~p~~P~~~~~l~~~~~~gl~ 345 (362)
T TIGR01010 320 --QPSLPDDALEPYRLYNILATFVILLI 345 (362)
T ss_pred --CCCCCCCcCCChHHHHHHHHHHHHHH
Confidence 123444444 3556677766665443
No 133
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.62 E-value=29 Score=38.40 Aligned_cols=181 Identities=20% Similarity=0.253 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c-------------------cCCHHH------HHHHHHH
Q 013164 102 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---D-------------------VLSEAD------FLKEKLK 153 (448)
Q Consensus 102 C~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~---~-------------------~~~ee~------l~~e~~~ 153 (448)
+.+=.+.+-+.+|.=++.+++|.+++...-+.+..-.. + .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66667777777788888888888887655544321100 0 111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
|+..-..+...+.+-..-...+..++.++..+...++++-..++..+..+..+-....+....+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222222222222223334566666777777777777777888888888877777777777777777766665554322
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 013164 234 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 287 (448)
Q Consensus 234 tNv---~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 287 (448)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++..+
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112221111 111111 113337899999999888776666555443
No 134
>PRK11519 tyrosine kinase; Provisional
Probab=85.31 E-value=42 Score=38.17 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.+..+.++.+++.+.+..+.-|+...+.++.++
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555656666666665555554
No 135
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.29 E-value=18 Score=39.03 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=5.9
Q ss_pred eeeeccccCCC
Q 013164 249 FGTINNFRLGR 259 (448)
Q Consensus 249 fGTINGlRLGr 259 (448)
||-||-=|+.+
T Consensus 152 ~~~l~~~~~~~ 162 (420)
T COG4942 152 YGALNPARAER 162 (420)
T ss_pred HHHhhHHHHHH
Confidence 45555555554
No 136
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.21 E-value=6.5 Score=38.31 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
...++..|+..=.++....-++|..+.++++|+.+++.+...+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777777777778888888888888877776655543
No 137
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.18 E-value=65 Score=35.49 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQ 204 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le---~e~~~l~~eE~~~w~e~n~~q 204 (448)
|..|....+.+|+.|..+...|..+++... .+.+....+-++..++++...
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~ 388 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKIN 388 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455555555555544444432 122223333334555554443
No 138
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.14 E-value=37 Score=32.67 Aligned_cols=112 Identities=27% Similarity=0.336 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 116 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL-------KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 116 qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~-------~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
++++-...-..|...|..|++...++-.--.-..++. ++..+.+.+++++.+-+.+..+++.++.+|+.++.+
T Consensus 63 ~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 63 QIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred ccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444445555667777777664432211111111222 234444555555555555666667777777777776
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 189 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 189 l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
|++.....=........++..++.....++..+..+..+
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555555555555555555555555433
No 139
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.01 E-value=52 Score=36.16 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 268 DEINAAWGQACLLLH 282 (448)
Q Consensus 268 ~EINAAwGQ~~LLL~ 282 (448)
.|++||=-=-.+-|.
T Consensus 421 ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 421 KEAEAAKASEALALA 435 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455554433333333
No 140
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.00 E-value=13 Score=42.83 Aligned_cols=45 Identities=33% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 195 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~ 195 (448)
+.+|+++..+++++.+++++.++++++..++++.+.+++++..++
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554444333
No 141
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.92 E-value=31 Score=42.27 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=5.1
Q ss_pred HHHHHHHHhh
Q 013164 82 TVLKRAFEIA 91 (448)
Q Consensus 82 ~~l~~lFdIl 91 (448)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.61 E-value=39 Score=37.60 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~ 132 (448)
++.++..+..|.+.|..-+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 44445555555555554443
No 143
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.40 E-value=45 Score=36.07 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHH
Q 013164 196 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL-ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 274 (448)
Q Consensus 196 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L-d~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 274 (448)
+.+..|.+.+....+++.+.+|..++-+.=..| +.|..++ ++||...+..|+..|=-+.+
T Consensus 214 ~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-------------------~~l~k~k~~~~~l~~K~~iL 274 (446)
T KOG4438|consen 214 KNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-------------------DLLQKEKSAMVELQEKAKIL 274 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999988888876553333 1222222 34444556667777777777
Q ss_pred HHHHHHHHHHHhhc
Q 013164 275 GQACLLLHTMCQYF 288 (448)
Q Consensus 275 GQ~~LLL~tla~~l 288 (448)
|-.+=-+.++-.-+
T Consensus 275 ~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 275 EEKVTNLQTIEKEL 288 (446)
T ss_pred HhHhHHHHHHHHHH
Confidence 77776666665543
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.35 E-value=35 Score=33.59 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=4.9
Q ss_pred CCCCceee
Q 013164 361 CFKLPYKI 368 (448)
Q Consensus 361 ~~~LPY~I 368 (448)
-++||-.+
T Consensus 240 l~~LPv~~ 247 (251)
T PF11932_consen 240 LLKLPVSI 247 (251)
T ss_pred HhccCCCC
Confidence 46777644
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.20 E-value=44 Score=32.74 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..+..+...+..++..+..+.+++.+++.+.+.+..++.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666777766666666666665555543
No 146
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.07 E-value=19 Score=34.05 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
..+..|.+.|+.+.+++.++++.|+.|...|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555554444333
No 147
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.88 E-value=47 Score=38.93 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=7.7
Q ss_pred eccccCCCCC
Q 013164 252 INNFRLGRLP 261 (448)
Q Consensus 252 INGlRLGrlp 261 (448)
||.++|-+-.
T Consensus 563 i~ql~l~~~~ 572 (980)
T KOG0980|consen 563 INQLELDSSA 572 (980)
T ss_pred HHHhhccccc
Confidence 8998888653
No 148
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.87 E-value=21 Score=40.39 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=8.4
Q ss_pred eeecCCCceEEe
Q 013164 298 IIPMGSYPRIMD 309 (448)
Q Consensus 298 LvPmGS~SkI~~ 309 (448)
..|.|+.|++-.
T Consensus 330 ~~p~s~~S~~n~ 341 (861)
T KOG1899|consen 330 SFPVSSSSTTNN 341 (861)
T ss_pred cccccccccccc
Confidence 567777777754
No 149
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.64 E-value=23 Score=40.96 Aligned_cols=38 Identities=37% Similarity=0.404 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.+|++++.+++++.+++++.++++++..++++.+.+++
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 150
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.57 E-value=50 Score=32.87 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
++.+-..|.....+++.+..+|..+....+.+...|...=..+-.....+.-....-..+...+..++..++..+.
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555444444444444444444333344444444555455555555566666666665443
No 151
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.52 E-value=27 Score=37.40 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
...+..+..++.+..+....++.-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999988888888888888753
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.52 E-value=46 Score=32.39 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
++......||++-+.|.++-+.+|+|...+.+++..|+.+...+
T Consensus 71 dLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 71 DLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33334444566666666666666666666666665555544433
No 153
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=83.50 E-value=17 Score=30.71 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFNNF 203 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~--~~w~e~n~~ 203 (448)
..+-++.||+|.+-|.+.|+.+|++++=..++|..++.+...|-.... .||.+...-
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~~ 63 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHRE 63 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCcccccccc
Confidence 356677899999999999999999999999999999998888876665 666665433
No 154
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.32 E-value=61 Score=36.51 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 013164 175 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 254 (448)
Q Consensus 175 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTING 254 (448)
+.++++.|+......+.+=.+-|.+.-.+..+..+...+...-+..+.....+++++.+. .|-.-++. .-+=.|.+
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~--RIlEIv~N 499 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTR--RILEIVKN 499 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHH--HHHHHHHh
Confidence 333444444333333333346677777888888888888777777788888888888877 33332221 12334555
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHH
Q 013164 255 FRLGRLPKIPVEWDEINAAWGQACLL 280 (448)
Q Consensus 255 lRLGrlp~~~V~W~EINAAwGQ~~LL 280 (448)
.|==+ .||+-=+.-|--|
T Consensus 500 I~KQk--------~eI~KIl~DTr~l 517 (594)
T PF05667_consen 500 IRKQK--------EEIEKILSDTREL 517 (594)
T ss_pred HHHHH--------HHHHHHHHHHHHH
Confidence 55433 4555555544444
No 155
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.26 E-value=20 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
|..|-+.|.+........|+.|..+.
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~ 42 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKI 42 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444333
No 156
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.06 E-value=24 Score=28.91 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 192 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e 192 (448)
.+||.--..+...|..|+.+.+++..+-..+..+...|.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444555555555555555544444444444444433
No 157
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=82.83 E-value=35 Score=41.21 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 118 DDVTRDIEAYEACLQ 132 (448)
Q Consensus 118 e~~~~E~~~Y~~fL~ 132 (448)
..++++...|..-|+
T Consensus 511 ~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 511 RKLEALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 158
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.52 E-value=55 Score=33.60 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHhhcCCcccCCcchHHH
Q 013164 75 SGFHSTITVLKRAFEIATSQTQVEQPLCLEC 105 (448)
Q Consensus 75 ~~ls~~i~~l~~lFdIlS~~s~iDhPLC~eC 105 (448)
+-+++.|.-+...=++.|.-++-...+|.=-
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~l 83 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEML 83 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 3477788877777777777777777777543
No 159
>PRK10698 phage shock protein PspA; Provisional
Probab=82.48 E-value=52 Score=32.26 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 177 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 177 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
..+..++.+.......-.++=..+..++..+.+...++..|.+++..+..+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555566666777777777777777777655
No 160
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.48 E-value=15 Score=40.07 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY-WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~-w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
+.|..++++++++.+.+.++=+.|.+|-++|.+.|... -+--+.++-...+++.++++++.+.+.++..|+.|.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555554433321 122222333334444555555555555555555553
No 161
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.46 E-value=47 Score=36.23 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013164 189 FKELEERYWQEFNNFQFQLIAHQEERDAISSK 220 (448)
Q Consensus 189 l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q 220 (448)
++++|+++=+..-..+.+..++++++.-|...
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 44445444455555555555555555444433
No 162
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.35 E-value=50 Score=37.67 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=20.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 199 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 199 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.....+.++.+++.+.+..+..|+...+..+.++-
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555555443
No 163
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.25 E-value=56 Score=37.60 Aligned_cols=113 Identities=19% Similarity=0.314 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~--ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
..|..++.+++.|.+.-...+.+...+... +. ..++.++...+|.+...|+.+|+++.--..++-++..+|++|--.
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~r-l~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQAENER-LSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 346666667777766666666554433211 11 123444445556666666666665544444444444443333222
Q ss_pred HHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 189 FKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 189 l~~eE---~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
|..+= ++---+|-.++.++..+++|...++.|++-+
T Consensus 109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21110 1122456677778888888888887776654
No 164
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=82.07 E-value=66 Score=40.63 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~-ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
++++.+.+++....+.+.|..-|+.+.....+... -.....+.-..+..+.++.++...|+++..-|..+|...-.++.
T Consensus 130 ~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll 209 (1822)
T KOG4674|consen 130 LLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLL 209 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555556666666777777666655432110000 00011111123455555555555555555555555544443333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 188 RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 188 ~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.+ +++.=.++..++-+|.....+...+..++.....+...|.
T Consensus 210 ~~---~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs 251 (1822)
T KOG4674|consen 210 SL---RREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELS 251 (1822)
T ss_pred HH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222344444444444444444444444444433333
No 165
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.02 E-value=63 Score=33.55 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 206 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE------------------~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 206 (448)
+.+.+.+..||+|-..|+.|...|. ++......++..|..++....++-.+.-.+...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556776666666655443 2222333444555555444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~L 228 (448)
+...+....++-..-+-.+.+|
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555554443333333333
No 166
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=81.82 E-value=50 Score=32.13 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013164 126 AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 205 (448)
Q Consensus 126 ~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 205 (448)
.|..|-+.-.. +.+.|+.+ -+|+.+..-++..|.+-+.....|.++|.-...+..+.... -...+.
T Consensus 89 ~Y~~F~~Qt~~-----LA~~eirR--~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~-------Q~q~r~ 154 (192)
T PF11180_consen 89 IYRDFAQQTAR-----LADVEIRR--AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAAR-------QQQARQ 154 (192)
T ss_pred HHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 57777664321 22233322 23455555555555555555555555554444333333222 122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 206 QLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 206 ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
+...+..++....+|++..+.++..|.+.
T Consensus 155 ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 155 EAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777777777654
No 167
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.71 E-value=32 Score=39.75 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=13.3
Q ss_pred CCCccchHHHHHHHHHhhc
Q 013164 74 NSGFHSTITVLKRAFEIAT 92 (448)
Q Consensus 74 ~~~ls~~i~~l~~lFdIlS 92 (448)
-++||..+..+..++.-++
T Consensus 383 LStfS~~m~~~~~il~~~~ 401 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKTT 401 (771)
T ss_pred hhHHHHHHHHHHHHHHhcC
Confidence 3568888887777766553
No 168
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=38 Score=39.28 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=5.3
Q ss_pred eeeccccCC
Q 013164 250 GTINNFRLG 258 (448)
Q Consensus 250 GTINGlRLG 258 (448)
-|-||||--
T Consensus 631 et~~~~~~~ 639 (1118)
T KOG1029|consen 631 ETTNGFPAN 639 (1118)
T ss_pred cccccCchh
Confidence 356777643
No 169
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.56 E-value=26 Score=38.10 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
...+..++.++..++..++.++..++++|..|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444455555555666666666677776654
No 170
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.41 E-value=57 Score=37.42 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=13.7
Q ss_pred CCCChHH----HHHHHH--HHHHHHHHH
Q 013164 263 IPVEWDE----INAAWG--QACLLLHTM 284 (448)
Q Consensus 263 ~~V~W~E----INAAwG--Q~~LLL~tl 284 (448)
..-.|.- .|--+| |+.|=...+
T Consensus 656 ~~tawereE~~l~~rL~dSQtllr~~v~ 683 (961)
T KOG4673|consen 656 AATAWEREERSLNERLSDSQTLLRINVL 683 (961)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4456765 677888 766544443
No 171
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.40 E-value=25 Score=30.46 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
..|+...+.++..++.++++...+..++.+++.+.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555443
No 172
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.32 E-value=81 Score=33.73 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 207 LIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+.+...++..+..++..++.++..++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344445555666666666666665543
No 173
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.26 E-value=52 Score=36.47 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhccccccCC-HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 121 TRDIEAYEACLQRLEGEARDVLS-EAD----------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 121 ~~E~~~Y~~fL~~L~~~~~~~~~-ee~----------l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
++|-..|--|+++|+.-...+.+ .++ ..+|..+|..+..++.+++..+--|.+++.+-|.........+
T Consensus 194 ~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql 273 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQL 273 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45566677777777532111111 111 2345556666666667777766666666665555443333333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 190 KELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 190 ~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
..++++.-..|-+..-.+.+.++|+..+.
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333444455566667776663
No 174
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.23 E-value=44 Score=36.86 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=7.8
Q ss_pred eeeeecCCeeeeccccCCC
Q 013164 241 FPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 241 F~I~hdG~fGTINGlRLGr 259 (448)
.++-.|.--|-|=| |=||
T Consensus 208 v~lp~d~~kgriig-reGr 225 (514)
T TIGR03319 208 VNLPNDEMKGRIIG-REGR 225 (514)
T ss_pred EEcCChhhhccccC-CCcc
Confidence 34444444444444 3443
No 175
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.10 E-value=1.3e+02 Score=35.84 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 013164 269 EINAAWGQACLLLHTMCQYF 288 (448)
Q Consensus 269 EINAAwGQ~~LLL~tla~~l 288 (448)
-|.||+|-=.+.=+.--+++
T Consensus 439 QVDAAlGAE~MV~qLtdknl 458 (1243)
T KOG0971|consen 439 QVDAALGAEEMVEQLTDKNL 458 (1243)
T ss_pred HHHHhhcHHHHHHHHHhhcc
Confidence 37788887666555433333
No 176
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.82 E-value=43 Score=39.73 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 196 YWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 196 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
-.+..+.+.-...+.++|+..++-+|...
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l 354 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSL 354 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44445555555555556666555444443
No 177
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.81 E-value=19 Score=39.22 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+.+-..-+.++..++..++.+++.+.++++++|.+++.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333445555555555555555555555555555444333
No 178
>PRK11281 hypothetical protein; Provisional
Probab=80.69 E-value=46 Score=40.19 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+.|+++++++.++.....+-|+++++
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666654
No 179
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=80.61 E-value=96 Score=34.11 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
++.+.....+++..+++-.+++..+.+.|-
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555443
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.56 E-value=30 Score=28.35 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
....|..++++|+.+...+..+...|+.+...|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555554444443
No 181
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=80.45 E-value=30 Score=29.60 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
..|+...+.+..+++.++++...+..++.+++.++.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555443
No 182
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.41 E-value=6.8 Score=34.73 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.4
Q ss_pred cCCCceeeeecCCeee
Q 013164 236 VLNDAFPIWHDGEFGT 251 (448)
Q Consensus 236 v~nd~F~I~hdG~fGT 251 (448)
+|.+=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 5999999988 57775
No 183
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.33 E-value=60 Score=31.60 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.++...+|.|-..|..++..|..+...+..+...++.....|
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 334444555555555555555555555555555555444444
No 184
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.13 E-value=28 Score=35.41 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=83.7
Q ss_pred CccchHHHHHHHH----HhhcC---CcccCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcccccc--CC-
Q 013164 76 GFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS- 143 (448)
Q Consensus 76 ~ls~~i~~l~~lF----dIlS~---~s~iDhPLC~eC~d~Lle~Ld~q-le~~-~~E~~~Y~~fL~~L~~~~~~~--~~- 143 (448)
...+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|..|+.-.-+. +.
T Consensus 94 Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~ 173 (269)
T PF05278_consen 94 VKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRS 173 (269)
T ss_pred EcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 4567788899999 78865 44455567889998999999763 3333 344444556666665322110 00
Q ss_pred -HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013164 144 -EADFLKE------KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 144 -ee~l~~e------~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
-+++... ....+.+.+..+..|+..+.|.+....++++.+++.+++.+.. -+..-.|.+++.++-.
T Consensus 174 ~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 174 KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 0111111 1122333333444444444555544455555554444443332 3344557777777777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013164 217 ISSKIEVSQAHLELLKR 233 (448)
Q Consensus 217 l~~q~~~~~~~Ld~L~k 233 (448)
+...+.++...+++..-
T Consensus 247 l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 247 LSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777778777777644
No 185
>PRK12704 phosphodiesterase; Provisional
Probab=80.10 E-value=50 Score=36.46 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.6
Q ss_pred eeeeecCCeeee
Q 013164 241 FPIWHDGEFGTI 252 (448)
Q Consensus 241 F~I~hdG~fGTI 252 (448)
+++-.|.--|-|
T Consensus 214 v~lp~d~mkgri 225 (520)
T PRK12704 214 VNLPNDEMKGRI 225 (520)
T ss_pred eecCCchhhcce
Confidence 334344333333
No 186
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.05 E-value=67 Score=31.96 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.3
Q ss_pred eccccCCCCCCCCCChHH
Q 013164 252 INNFRLGRLPKIPVEWDE 269 (448)
Q Consensus 252 INGlRLGrlp~~~V~W~E 269 (448)
|+...-|.-|..||+..|
T Consensus 244 v~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 244 AESKGTGKERPGPVGFEE 261 (261)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 677777888888887643
No 187
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.76 E-value=24 Score=28.72 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
+..+..|..+++.+.+....|..-++.|..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888887654
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.52 E-value=71 Score=36.51 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 214 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~ 214 (448)
++..+....+++..|..+...+.+++..+..+...+.++-++.|+..+..+.++.+.....
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566677777777777777777777777777788888888766665544433
No 189
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=79.51 E-value=1.2e+02 Score=34.99 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----------H---HHHHHHHhHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KEL----------E---ERYWQEFNNFQFQLIAH 210 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l----~~e----------E---~~~w~e~n~~q~ql~~~ 210 (448)
.+.+..++........+|..+.++.+.|.+++.....+.... +.+ | ...|.+.-.+......+
T Consensus 175 e~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L 254 (739)
T PF07111_consen 175 EKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHL 254 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHH
Confidence 333333444333445556666666666666665554433321 111 0 12345556666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013164 211 QEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 211 ~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
++++++|.+..+..+..+..|.
T Consensus 255 ~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 255 QEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888877776665543
No 190
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.46 E-value=43 Score=34.75 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=6.0
Q ss_pred HHHHHHHHHhc
Q 013164 126 AYEACLQRLEG 136 (448)
Q Consensus 126 ~Y~~fL~~L~~ 136 (448)
.|-.||+.++.
T Consensus 94 ~yNdYLE~vEd 104 (309)
T TIGR00570 94 EYNDYLEEVED 104 (309)
T ss_pred HHHHHHHHHHH
Confidence 35566665543
No 191
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.40 E-value=52 Score=30.37 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
+...|+.+...+..++..|+.+...+..+-..|
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 192
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.33 E-value=95 Score=34.20 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 203 FQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 203 ~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
.+..|.....+....++.-..+..++.-|
T Consensus 412 ~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 412 AEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333444433
No 193
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.10 E-value=17 Score=38.86 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
......++.|+.+++....+.......+.+++..........+..+...++.+....+.+++++++.+..++.++++.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667777777777777777777766654221111122333444455555555555555555555544444433
No 194
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.04 E-value=12 Score=34.59 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
+..+...|..++.+++++...+..|+..|
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 195
>PRK00106 hypothetical protein; Provisional
Probab=78.75 E-value=76 Score=35.35 Aligned_cols=18 Identities=33% Similarity=0.339 Sum_probs=7.6
Q ss_pred eeeeecCCeeeeccccCCC
Q 013164 241 FPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 241 F~I~hdG~fGTINGlRLGr 259 (448)
+++-.|.--|-|=| |=||
T Consensus 229 v~lp~demkGriIG-reGr 246 (535)
T PRK00106 229 VHLPDDNMKGRIIG-REGR 246 (535)
T ss_pred EEcCChHhhcceeC-CCcc
Confidence 33444444444443 3443
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.57 E-value=1.3e+02 Score=36.20 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEA 126 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~ 126 (448)
+.|+..+-.+++.+.+|..+
T Consensus 403 ~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45676677777776666554
No 197
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=78.28 E-value=8.9 Score=41.39 Aligned_cols=50 Identities=8% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 220 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q 220 (448)
+.++...++.+++.++. +++..|++||+.|..++.-+..++.....|..+
T Consensus 411 l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555443 456788899999999988776665555444443
No 198
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=78.06 E-value=68 Score=30.97 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHhHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-------KELEER---YWQEFNNFQFQLIAHQEERDAISS 219 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l-------~~eE~~---~w~e~n~~q~ql~~~~~e~~sl~~ 219 (448)
.+..+..|-.+|.+-|..++.+.+++..++...+.....| ...+++ .=.++..+...+...+.||+.|..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555554443332222 222221 112344445555666666776666
Q ss_pred HHHHHH
Q 013164 220 KIEVSQ 225 (448)
Q Consensus 220 q~~~~~ 225 (448)
++..+-
T Consensus 129 kf~~~i 134 (201)
T PF13851_consen 129 KFESAI 134 (201)
T ss_pred HHHHHH
Confidence 655553
No 199
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.94 E-value=1e+02 Score=37.31 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=12.3
Q ss_pred CccceeeEEecCCC-CchhhHHHHHHHh
Q 013164 371 DKVENYSITQSFNK-QENWTKALKYTLC 397 (448)
Q Consensus 371 dkI~g~SI~l~~n~-~e~WTkAlK~lLt 397 (448)
+.|++..|++...- +-++=+.+|-+-.
T Consensus 1026 ~~i~~i~v~i~s~i~~l~~w~~Lk~F~~ 1053 (1201)
T PF12128_consen 1026 EAISDIEVRIRSSIDELEFWKPLKQFSD 1053 (1201)
T ss_pred cccceeEEEEEechhhhccHHHHHHHHH
Confidence 45556666663222 2333344554444
No 200
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.88 E-value=1.1e+02 Score=33.43 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRF----------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l----------------~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
..+|+++|.+...+.+|++.-+.....| .+--.++-.......-+.....++...|..+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666433322222 112223333444444555666667777777766666
Q ss_pred HHHHH
Q 013164 226 AHLEL 230 (448)
Q Consensus 226 ~~Ld~ 230 (448)
..|+|
T Consensus 424 e~L~R 428 (521)
T KOG1937|consen 424 EALNR 428 (521)
T ss_pred HHHhh
Confidence 55543
No 201
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.86 E-value=63 Score=35.18 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 013164 206 QLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 282 (448)
Q Consensus 206 ql~~~~~e~~sl~~q~~~~~~~Ld~L~k-tNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 282 (448)
+..-++.+|+..+.|+..|..-.++|+| .+-+=-+||.-|... +..+.-.-=|--.|+|.+.-+|.
T Consensus 348 E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss-----------lDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 348 EVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS-----------LDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc-----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888889999999999975 455556788877554 22323333455567777655443
No 202
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.85 E-value=86 Score=31.97 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
.+..++.+|..|+..|+.-..|.++..+.|..|+
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544444444444
No 203
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.79 E-value=36 Score=27.65 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
++.+.+..++...-.+...|.+.++....+|+.++
T Consensus 33 ~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 33 RERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555556666666666666666666554
No 204
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=77.75 E-value=14 Score=30.76 Aligned_cols=75 Identities=29% Similarity=0.392 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~---------~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
.+..++..++.+.+....-++.|..-..+ .+-..+...-...|+...+.+..+++.++++...+..++.++
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555432111 000011223344567777777777777777777777777777
Q ss_pred HHHH
Q 013164 183 ELKS 186 (448)
Q Consensus 183 e~e~ 186 (448)
+.+.
T Consensus 96 ~~~l 99 (106)
T PF01920_consen 96 KKKL 99 (106)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 205
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.70 E-value=1.2e+02 Score=33.45 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 189 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 189 l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
.+..|++|....-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777778888888877655443
No 206
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=77.70 E-value=46 Score=32.66 Aligned_cols=42 Identities=17% Similarity=0.383 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 203 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~ 203 (448)
..++.+|+.++.+.++-. +........+-+-|-++++.+..|
T Consensus 145 ~~~eeElr~Ae~kfees~---E~a~~~M~~i~~~e~e~~~~L~~l 186 (215)
T cd07593 145 SRLEEELRRAKAKYEESS---EDVEARMVAIKESEADQYRDLTDL 186 (215)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcChHHHHHHHHH
Confidence 334444444444433322 233333334444445566666555
No 207
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.64 E-value=63 Score=36.40 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
++.|+.+++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 208
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.44 E-value=25 Score=39.73 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..||.++-+|.+|+.+|+.+...++
T Consensus 170 tsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 3566666666666666666555554
No 209
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=77.43 E-value=47 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
++|+.++..+.-+++.+..-|+.++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667666667777766665443
No 210
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.31 E-value=68 Score=32.19 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHhhcC
Q 013164 84 LKRAFEIATS 93 (448)
Q Consensus 84 l~~lFdIlS~ 93 (448)
..+.|+-|++
T Consensus 75 A~kf~eeLrg 84 (290)
T COG4026 75 AEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHH
Confidence 4456666655
No 211
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.30 E-value=95 Score=37.64 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=6.7
Q ss_pred CccceeeEEec
Q 013164 371 DKVENYSITQS 381 (448)
Q Consensus 371 dkI~g~SI~l~ 381 (448)
|.+-|++|.+.
T Consensus 581 dslyGl~LdL~ 591 (1201)
T PF12128_consen 581 DSLYGLSLDLS 591 (1201)
T ss_pred cccceeEeehh
Confidence 46666666663
No 212
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.24 E-value=81 Score=33.80 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
...+.|++|+..++++.+.-+.-|...+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555554443
No 213
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.13 E-value=36 Score=28.96 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
...++..+-++-+.+..+++.|..++..+.+++..+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34566667778888888888888888888888777754
No 214
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=54 Score=30.42 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----c----------------cC------------CHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----D----------------VL------------SEADFLKEKLK 153 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~-----~----------------~~------------~ee~l~~e~~~ 153 (448)
+..++.|+.++..+..-+..++.+++-|+.-.. + .. -+.++.+..+-
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 345677777777777777777777766642110 0 00 01223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
|++..++|.+.++.++.+.+++.+.+..++.+...+.
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443
No 215
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.63 E-value=94 Score=33.84 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
|....++|..+..+...+|+.+..++
T Consensus 323 lksl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 323 LKSLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 216
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.55 E-value=1.4e+02 Score=33.89 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEA 126 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~ 126 (448)
.++..|..++.+++.+...
T Consensus 288 ~~i~~L~~~l~~l~~~~~~ 306 (754)
T TIGR01005 288 DLIQRLRERQAELRATIAD 306 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666554443
No 217
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.48 E-value=67 Score=36.51 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEA 129 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~ 129 (448)
=++.+.+++++++++...|+.
T Consensus 202 ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777753
No 218
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=76.34 E-value=42 Score=30.03 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
+.+.+.-|+...+.+...++.++++...+.+++..+.....++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666666666555555555544443
No 219
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.26 E-value=17 Score=28.98 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
..|+.+....-..+...|.+.++...++.++|..|+.+.+++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555566667777777777777777776665544
No 220
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=76.13 E-value=48 Score=28.25 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 115 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 115 ~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
.++..++.+++....-+.....+. ..+...+.+|+.|..+..++.-++++....+..|++.|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~------~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKEL------TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555444444443332211 2233445566666666666666666666666666666653
No 221
>PRK06798 fliD flagellar capping protein; Validated
Probab=76.08 E-value=11 Score=40.61 Aligned_cols=52 Identities=8% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
+.+.++.+...++.++++++. +++..|++||+.|+.+...+..++.+...|.
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~ 431 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIK 431 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555553 3567788999999999888877665444433
No 222
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.66 E-value=16 Score=39.20 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
+.++|.++++++..+.+++++.+..++.... ......+.-..+..+...+..+.++...+..++...+.++++.
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443111 1111112234445555556666666667777777777777766
No 223
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=75.65 E-value=1.3e+02 Score=33.42 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=69.8
Q ss_pred ccchHHHHHHHHHhhcCC-cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------------
Q 013164 77 FHSTITVLKRAFEIATSQ-TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------- 139 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~-s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~---------------- 139 (448)
|..++..+..-|+-...- .+-|| .=++-++..++.++..++...+.-=..++.++..-.
T Consensus 166 Le~~L~~ie~~F~~f~~lt~~GD~----~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 166 LEKQLENIEEEFSEFEELTENGDY----LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 455555555555443221 12233 235556666777777776666654444433332110
Q ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013164 140 -DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 140 -~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~-~eE~~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
=.+...++.+++..+++........|..+ +..++...+..+..++..|- ..|++ -..++.....+..+.+-...+
T Consensus 242 gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E-~~Ak~~V~~~~~~l~~~l~~~ 318 (560)
T PF06160_consen 242 GYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKE-VEAKKYVEKNLKELYEYLEHA 318 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH
Confidence 01222345555555555555555554443 22233333344444444432 11111 122233333344444445555
Q ss_pred HHHHHHHHHHHHHHhhc
Q 013164 218 SSKIEVSQAHLELLKRT 234 (448)
Q Consensus 218 ~~q~~~~~~~Ld~L~kt 234 (448)
..+.......+++++..
T Consensus 319 ~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 319 KEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666677777654
No 224
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.54 E-value=1.1e+02 Score=33.67 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le---~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
..+..+..-.++....++++-...+++.+++..++ .+.+.++++.+++++.+...-.++... |...-. ....
T Consensus 308 ~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---R~~~a~--~l~~ 382 (563)
T TIGR00634 308 ERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---RRKAAE--RLAK 382 (563)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHH
Confidence 33333444444433355566666666666666654 345555555566666666665555432 221111 2222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 013164 226 AHLELLKRTNVLNDAFPIWH 245 (448)
Q Consensus 226 ~~Ld~L~ktNv~nd~F~I~h 245 (448)
.-...|+..+.-+..|+|..
T Consensus 383 ~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 383 RVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHhCCCCCcEEEEEE
Confidence 33466778888888998865
No 225
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.14 E-value=1.4e+02 Score=35.69 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIE 125 (448)
Q Consensus 113 Ld~qle~~~~E~~ 125 (448)
|.++.++++..+.
T Consensus 413 Ls~k~e~Leeri~ 425 (1195)
T KOG4643|consen 413 LSKKHEILEERIN 425 (1195)
T ss_pred HhHHHHHHHHHHH
Confidence 4444444444333
No 226
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.83 E-value=37 Score=32.51 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHhhcCCcccCCcchHHHHHHHHH
Q 013164 86 RAFEIATSQTQVEQPLCLECMRVLSD 111 (448)
Q Consensus 86 ~lFdIlS~~s~iDhPLC~eC~d~Lle 111 (448)
.|=.+++...-|-.-...|+...|++
T Consensus 16 ELEK~~pK~~gI~~~~VKdvlq~LvD 41 (188)
T PF03962_consen 16 ELEKLAPKEKGIVSMSVKDVLQSLVD 41 (188)
T ss_pred HHHHHcccccCCchhhHHHHHHHHhc
Confidence 33334444334444445555555554
No 227
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.68 E-value=1.5e+02 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=12.5
Q ss_pred CCcchHHHHHHHHHHHH
Q 013164 98 EQPLCLECMRVLSDKLD 114 (448)
Q Consensus 98 DhPLC~eC~d~Lle~Ld 114 (448)
..|--+||..+|.+..+
T Consensus 553 SsP~~~E~~~lL~~a~~ 569 (741)
T KOG4460|consen 553 SAPPPEECLQLLSRATQ 569 (741)
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 34668999999887554
No 228
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.59 E-value=53 Score=31.46 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
....++.+++.+.++++....-+..++..... . +....-..+...+.+++++|+++.+++.+++..+
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~------~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEE------A-KKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655555544432100 0 0000001344445556666666666666655543
No 229
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.54 E-value=1.7e+02 Score=34.21 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~ 132 (448)
++.+.+...+......+......+...+.
T Consensus 167 ~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 167 EKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665555555
No 230
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.40 E-value=66 Score=32.74 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
+..+-....+.+..+..+.+.|+..|+
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444444444443
No 231
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.24 E-value=52 Score=29.24 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
+++..+-+..+|+.+|++...+...+.+++.+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444433
No 232
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.74 E-value=1.5e+02 Score=32.62 Aligned_cols=10 Identities=20% Similarity=0.754 Sum_probs=5.6
Q ss_pred ChHHHHHHHH
Q 013164 266 EWDEINAAWG 275 (448)
Q Consensus 266 ~W~EINAAwG 275 (448)
+|+|+-.-+=
T Consensus 386 ~~~elE~rl~ 395 (511)
T PF09787_consen 386 SWNELESRLT 395 (511)
T ss_pred CcHhHHHHHh
Confidence 5777654443
No 233
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.74 E-value=1.9e+02 Score=33.85 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013164 161 LEAAIEET 168 (448)
Q Consensus 161 L~~eL~~l 168 (448)
|..+++.|
T Consensus 341 Lqsdve~L 348 (775)
T PF10174_consen 341 LQSDVEAL 348 (775)
T ss_pred HHHhHHHH
Confidence 33333333
No 234
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.44 E-value=1.8e+02 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.016 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHHHHH
Q 013164 264 PVEWDEINAAWGQACLL 280 (448)
Q Consensus 264 ~V~W~EINAAwGQ~~LL 280 (448)
-..--|+|.++++...=
T Consensus 260 i~~~~~~N~~Ls~~L~~ 276 (1109)
T PRK10929 260 IVAQFKINRELSQALNQ 276 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556889888876543
No 235
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.43 E-value=2.1e+02 Score=34.39 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEET 168 (448)
Q Consensus 154 Le~EE~~L~~eL~~l 168 (448)
++..++.|..|.++|
T Consensus 434 led~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 434 LEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 236
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.42 E-value=1e+02 Score=34.43 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeeeec
Q 013164 174 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 246 (448)
Q Consensus 174 ~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv-------~nd~F~I~hd 246 (448)
.+...++.++......+..-.++-..++.+..+=.+..+.+..+..++.-... .+.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR---~mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR---YMEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCcHHHHHHHHhhhhH
Confidence 34444555555554554444455555555555554545544444444443332 3445554 3355666664
Q ss_pred CCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 013164 247 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 287 (448)
Q Consensus 247 G~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 287 (448)
=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222 3444 5888999999999998888766543
No 237
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.07 E-value=1.2e+02 Score=34.07 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHHhhCCccCCccccCCCccc
Q 013164 394 YTLCNLKWALFWFVGNTNFQPVSAMSSPAEV 424 (448)
Q Consensus 394 ~lLtNlKwllaw~~~~t~~~~~~~~~~~~~~ 424 (448)
-++..+||...+.+.+....-+..+|-++.+
T Consensus 601 ~~~~~~k~~~~~ql~~~~~~~~~~~~ln~~d 631 (654)
T KOG4809|consen 601 TLAECLKWLTTFQLVSIGLAAVAMDVLNTGD 631 (654)
T ss_pred HHHHHHccccHHHHHHHHHHhcccCCCCCCc
Confidence 3567889999888877665544444444433
No 238
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=72.02 E-value=1.3e+02 Score=35.35 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee
Q 013164 190 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 244 (448)
Q Consensus 190 ~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~ 244 (448)
-..|++|=.+...+.-.+.+...++.++.++++.....+-..+.--+.-+-|...
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 3455566667777777777777778888888877776666666655655556543
No 239
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.66 E-value=47 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 013164 210 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 261 (448)
Q Consensus 210 ~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp 261 (448)
+.+.+..+-|.+..+.++.-...-.-|-+++ .|.+.|+|-+|||-|+ ..|
T Consensus 137 ~~~dl~~viNeL~~sGAEaIsIn~~RI~~~t-~Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 137 HDDDLQAVINELNISGAEAISINGQRIGSNT-TIRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred CHHHHHHHHHHHHhccchheeECCEEeecce-EEEecCCeEEECCeec-CCC
Confidence 4444445555555555444433333333333 3666789999999999 444
No 240
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.22 E-value=1.3e+02 Score=31.09 Aligned_cols=36 Identities=28% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 197 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 197 w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
-.+.-.+..++.++++++..+...++....+...++
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555556666666666665555554443
No 241
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=71.07 E-value=38 Score=27.44 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
|+.--..|...-++|..|...+.+++..++.|.
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555544444444333
No 242
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.06 E-value=1.3e+02 Score=35.11 Aligned_cols=8 Identities=50% Similarity=0.401 Sum_probs=3.3
Q ss_pred CCCCceEE
Q 013164 37 AMDESFVV 44 (448)
Q Consensus 37 ~~~esfv~ 44 (448)
.|..|+|+
T Consensus 128 ~m~~s~v~ 135 (1118)
T KOG1029|consen 128 RMSSSPVV 135 (1118)
T ss_pred ccCCCccC
Confidence 33344444
No 243
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=71.02 E-value=15 Score=40.24 Aligned_cols=54 Identities=24% Similarity=0.376 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 169 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 169 E~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.++...++.+++.+. ++++..|++||..||.+...+...+. |..+.++++..++
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~s-------q~~~L~q~l~~~~ 481 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMNS-------QSSYLTQQLVSVS 481 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc
Confidence 344444445444444 34688899999999999887765554 4455555554443
No 244
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=70.95 E-value=1.3e+02 Score=30.80 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=2.5
Q ss_pred HHHHHH
Q 013164 126 AYEACL 131 (448)
Q Consensus 126 ~Y~~fL 131 (448)
+|..+|
T Consensus 126 ~yLe~L 131 (269)
T PF05278_consen 126 YYLECL 131 (269)
T ss_pred HHHHHH
Confidence 344443
No 245
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.87 E-value=16 Score=37.77 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhcCC
Q 013164 274 WGQACLLLHTMCQYFRP 290 (448)
Q Consensus 274 wGQ~~LLL~tla~~l~~ 290 (448)
.|-++|.-.++ .|+|+
T Consensus 311 ~GD~llaaa~i-sY~G~ 326 (344)
T PF12777_consen 311 VGDSLLAAAFI-SYLGP 326 (344)
T ss_dssp HHHHHHHHHHH-HCCCC
T ss_pred HHHHHHHHHHH-HHcCC
Confidence 44444443333 36663
No 246
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.85 E-value=1.3e+02 Score=34.54 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY---------------WQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~---------------w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
|.++...+...|+++.+++.+-.+|+.++..+++.+..+.... .+..+.|+.+|.++++|...=.
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rl 180 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRL 180 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777778888888777777777777777665444333 2455556666666665555433
Q ss_pred HHHHHHHHHHHHH
Q 013164 219 SKIEVSQAHLELL 231 (448)
Q Consensus 219 ~q~~~~~~~Ld~L 231 (448)
.++..-...+..|
T Consensus 181 ekv~~~~~~I~~l 193 (660)
T KOG4302|consen 181 EKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 247
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.79 E-value=59 Score=35.18 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 144 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 144 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.+++..++++-.+.+++|..=.--.|++.+++.+.+.+.+..+++|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46677788887777777777666778888888777776666555554
No 248
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=70.79 E-value=1.3e+02 Score=34.20 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHh
Q 013164 334 TLFLSCLKDFAEFAN 348 (448)
Q Consensus 334 ~afL~cl~q~~~~~~ 348 (448)
..|++++.+.++..+
T Consensus 421 ~~f~~~~~e~adl~e 435 (617)
T PF15070_consen 421 SRFMDLMEEKADLKE 435 (617)
T ss_pred HHHHHHHHHHhhHHH
Confidence 367888877665443
No 249
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=70.78 E-value=1.1e+02 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 211 (448)
+....+|...|.-...+..++.........|...|+.+-..+-..++.++.++..++
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777777777776665555555555555554433
No 250
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=70.74 E-value=76 Score=32.64 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013164 212 EERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
-....++.|+..+..++++|.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555553
No 251
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.70 E-value=1.8e+02 Score=34.03 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
++.+.+++++..++.|++--....++...-.|..+|.
T Consensus 148 ken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kq 184 (769)
T PF05911_consen 148 KENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQ 184 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4445555555555555544444444444444444443
No 252
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.69 E-value=1.7e+02 Score=34.57 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCcccCCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 81 ITVLKRAFEIATSQTQVEQPLCLECMRV-----LSDKLDKEVDDVTRDIEAYEACL 131 (448)
Q Consensus 81 i~~l~~lFdIlS~~s~iDhPLC~eC~d~-----Lle~Ld~qle~~~~E~~~Y~~fL 131 (448)
-+++.+.- -||++-+.=-|+=..|+.. -++.+-+.+++..++.++...-|
T Consensus 228 q~vl~ev~-QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 228 QKVLKEVM-QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHH-HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3566666677888888754 23333344444444444444333
No 253
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=70.65 E-value=1.1e+02 Score=31.80 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
++.+.+++++..|+.|-.+|+-|-++..++..++..++...++.
T Consensus 256 eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 256 EITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777788888888888777777777777776655544
No 254
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=70.34 E-value=2e+02 Score=33.60 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.+.+|-+++...+.+-+++..+..+ ..+.|..+++.+=++....+-.+++.|.+.+.|...|...+++-..++.||+
T Consensus 466 ~q~~Enk~~~~~~~ekd~~l~~~kq---~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 466 NQKEENKRLRKMFQEKDQELLENKQ---QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 3344444455544444444333322 1223444454444456778888899999888888888877777777777776
Q ss_pred hc
Q 013164 233 RT 234 (448)
Q Consensus 233 kt 234 (448)
..
T Consensus 543 eL 544 (861)
T PF15254_consen 543 EL 544 (861)
T ss_pred HH
Confidence 53
No 255
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=69.77 E-value=67 Score=31.33 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=5.1
Q ss_pred HHHHHHhhcCCCC
Q 013164 280 LLHTMCQYFRPKF 292 (448)
Q Consensus 280 LL~tla~~l~~~f 292 (448)
+|.-+.++|-..|
T Consensus 137 iLt~viQ~LP~sF 149 (228)
T PRK06800 137 ILTGIVQTLPTSF 149 (228)
T ss_pred HHHHHHHHcchhH
Confidence 3334444443333
No 256
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=69.61 E-value=73 Score=35.92 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccc---cccCC-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 105 CMRVLSDKLDKEVDDVTRDIEAYEA---CLQRLEGEA---RDVLS-EAD-FLKEKLKIEEEERKLEAAIEETEKQNAEVN 176 (448)
Q Consensus 105 C~d~Lle~Ld~qle~~~~E~~~Y~~---fL~~L~~~~---~~~~~-ee~-l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 176 (448)
=+|.| .|-++++.+..|...... .|+-++.+- .+.++ +.+ |.-|++..+.-..+|+..+.++|.|...+.
T Consensus 293 gAdll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 293 GADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred hhhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35655 788888887776655432 232222110 01122 222 223444334444445555555555555555
Q ss_pred HHHHHHH-------------HHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Q 013164 177 AELKELE-------------LKSKRFKELE-ERYWQEFNNFQFQLIAHQEER 214 (448)
Q Consensus 177 ~el~~le-------------~e~~~l~~eE-~~~w~e~n~~q~ql~~~~~e~ 214 (448)
++..+.. ++.+++..-| .+..-++|.++-.|.++|+..
T Consensus 371 ~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 371 AEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5444432 2233444333 367778899988888877644
No 257
>PF15294 Leu_zip: Leucine zipper
Probab=69.45 E-value=1.2e+02 Score=31.03 Aligned_cols=81 Identities=22% Similarity=0.348 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAE-------VNAELKELELKS-------------KRFKELEERYWQEFNNFQFQ 206 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~-------l~~el~~le~e~-------------~~l~~eE~~~w~e~n~~q~q 206 (448)
+.+|+.+|.+|-.+|...|..+|++... +.++|.+++... ..+.++|...-.--+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 5678888888888888888887765544 444444444311 11233555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~ 227 (448)
+........+|+..+..+...
T Consensus 210 ~~d~~~~~k~L~e~L~~~Khe 230 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHE 230 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 554444444554444444333
No 258
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=45 Score=35.14 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELE 183 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le 183 (448)
.+|+.+++.|++++.+++
T Consensus 249 ~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 259
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.35 E-value=1.2e+02 Score=31.35 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHh
Q 013164 327 TRYDKAMTLFLSCLKDFAEFAN 348 (448)
Q Consensus 327 ~kFD~AM~afL~cl~q~~~~~~ 348 (448)
+||..-=..+++-|+.+..-++
T Consensus 222 kKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 222 KKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666665553
No 260
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.30 E-value=1.5e+02 Score=33.35 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=64.2
Q ss_pred HhhcCCcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 89 EIATSQTQVEQ-PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE 167 (448)
Q Consensus 89 dIlS~~s~iDh-PLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~ 167 (448)
+-+|+...++- -+=.+-+..+-|++=+.-+-+..|.+....-|++.+++.-.. -.++.+|.+++++-..+|++.+++
T Consensus 550 ~~~SsP~~~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~--l~~~~eer~~i~e~a~~La~R~ee 627 (741)
T KOG4460|consen 550 KASSAPPPEECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQD--LSYCREERKSLREMAERLADRYEE 627 (741)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455443331 233345556666666666666666666666665544322100 123344445555555555566655
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELEL----KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 168 lE~e~~~l~~el~~le~----e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
+-...+.+.+-+++|.. +...+-.-|..| +.+++..-++.++|.+.++.+....++
T Consensus 628 a~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdF-------k~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 628 AKEKQEDLMNRMKKLLHSFHSELPVLSDAERDF-------KKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHhHHHHHHHHHHHHhcccccCCcchhHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444431 222333444433 444444455555555555555444433
No 261
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.26 E-value=30 Score=32.59 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
++.+++.+|++++++|.+..+.+++.++++.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555544443
No 262
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.05 E-value=1.1e+02 Score=29.45 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013164 196 YWQEFNNFQFQLIAHQEERDAISSKIE 222 (448)
Q Consensus 196 ~w~e~n~~q~ql~~~~~e~~sl~~q~~ 222 (448)
|=++++.-.....+.+.+...+...+.
T Consensus 155 ~~rql~~e~kK~~~~~~~~~~l~~ei~ 181 (194)
T PF15619_consen 155 FRRQLASEKKKHKEAQEEVKSLQEEIQ 181 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 263
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=68.83 E-value=2.8e+02 Score=34.13 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=8.1
Q ss_pred ccchHHHHHHHHHhhc
Q 013164 77 FHSTITVLKRAFEIAT 92 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS 92 (448)
+..++..|.++=.||+
T Consensus 1520 I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHhcccHHHHHH
Confidence 3444455555555553
No 264
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.83 E-value=1.5e+02 Score=30.64 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=16.9
Q ss_pred CCcccccchHHHHHHHHHHHHHH
Q 013164 322 NLFWSTRYDKAMTLFLSCLKDFA 344 (448)
Q Consensus 322 ~lf~~~kFD~AM~afL~cl~q~~ 344 (448)
+.+|-++|+.+-.++++.+.+-.
T Consensus 260 ~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 36677888888888888776643
No 265
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.78 E-value=37 Score=29.51 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=15.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
++.++..+.+...+.+.+.++++....+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555444444
No 266
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=68.58 E-value=2e+02 Score=35.24 Aligned_cols=8 Identities=0% Similarity=-0.167 Sum_probs=3.0
Q ss_pred cCCCCCCC
Q 013164 9 PKQRPQSH 16 (448)
Q Consensus 9 ~~~~~~~~ 16 (448)
+=.++.+.
T Consensus 345 ~W~~iR~~ 352 (1317)
T KOG0612|consen 345 DWDNIRES 352 (1317)
T ss_pred Chhhhhhc
Confidence 33334333
No 267
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.54 E-value=28 Score=35.87 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=10.8
Q ss_pred ccCCcchHHHHHHHH
Q 013164 96 QVEQPLCLECMRVLS 110 (448)
Q Consensus 96 ~iDhPLC~eC~d~Ll 110 (448)
.=-|++|..|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 566788888877754
No 268
>PF13514 AAA_27: AAA domain
Probab=68.42 E-value=1.3e+02 Score=36.00 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH
Q 013164 262 KIPVEWDEINAAWGQACLLLHTMC 285 (448)
Q Consensus 262 ~~~V~W~EINAAwGQ~~LLL~tla 285 (448)
...|+..+...+----+.|-.-||
T Consensus 1018 G~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1018 GERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred CeEeeHHHhCHHHHHHHHHHHHHH
Confidence 356788888777655444444444
No 269
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.19 E-value=73 Score=26.87 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKE 181 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~ 181 (448)
||++|..+...+.++...
T Consensus 26 EieELKekn~~L~~e~~~ 43 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 270
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.14 E-value=86 Score=36.47 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013164 269 EINAAWGQACLLLHTMC 285 (448)
Q Consensus 269 EINAAwGQ~~LLL~tla 285 (448)
||-||=|-+|=.=-||+
T Consensus 734 EiaaAA~KLAECQeTI~ 750 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIA 750 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887776666665
No 271
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.13 E-value=1.5e+02 Score=30.57 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=47.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEA--AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 154 Le~EE~~L~~--eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
+|+|--+.++ .|+++.+|..+|.+-++-.+.-+.+.+.==++|+.+.|---..| .+|...++.|++-. |
T Consensus 106 IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL-------EsLLqsMElAq~g~--~ 176 (305)
T PF15290_consen 106 IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL-------ESLLQSMELAQSGS--L 176 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH-------HHHHHHHHHHHhcc--c
Confidence 3444444333 35677777777777666666666666666678999998776655 45666667777655 5
Q ss_pred hhcccC
Q 013164 232 KRTNVL 237 (448)
Q Consensus 232 ~ktNv~ 237 (448)
+.-+.+
T Consensus 177 rde~~l 182 (305)
T PF15290_consen 177 RDEGCL 182 (305)
T ss_pred cccCCc
Confidence 554433
No 272
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.00 E-value=8 Score=43.86 Aligned_cols=125 Identities=24% Similarity=0.311 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~-~~ee~------l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 179 (448)
..++..|+++..-+.+||+.|..-|+....+.... .+..+ +..-.+.++....++..+|..++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44677888999999999999999998876543211 11001 000011122222233334444544443333322
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 180 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 180 ~~le~e~~~l~~eE---~----~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
..++.+...+.... . .+=..++.++.+...++.++..+..++.....+|+++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23333333222111 1 2345677788888888888888888888888888874
No 273
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=67.96 E-value=67 Score=27.70 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
.-++...+.+..+++.++++...+.+++..++...
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555443
No 274
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=67.90 E-value=1.7e+02 Score=31.80 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013164 175 VNAELKELELKSKRFKELEERYWQEFNNFQF 205 (448)
Q Consensus 175 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 205 (448)
+.+++...+++..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888888999999999987777554
No 275
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.71 E-value=1.6e+02 Score=37.34 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
.+..++++...+++..+.-+..+
T Consensus 63 ~l~q~~~~~~~q~~~~~~e~s~l 85 (1822)
T KOG4674|consen 63 RLEQRLSDLSRQAKLLRNELSDL 85 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666655544443
No 276
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=67.61 E-value=1e+02 Score=32.78 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 192 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e 192 (448)
|...++.|+++..|++.|+++++..+...+.++++
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeE 274 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEE 274 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666665555555433
No 277
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=67.58 E-value=81 Score=27.63 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
..++.+.++++.+...+..|...++.|+
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 13 QEIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777788877766554
No 278
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=67.52 E-value=1.3e+02 Score=33.48 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 013164 101 LCLECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 135 (448)
Q Consensus 101 LC~eC~d~Lle~Ld~qle~~~~E~~~-----Y~~fL~~L~ 135 (448)
|=.|=....+..|.+++++++.|... |..|...+.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777777776666543 666665543
No 279
>PRK10869 recombination and repair protein; Provisional
Probab=67.48 E-value=2.1e+02 Score=31.84 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 013164 164 AIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 240 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~---e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~ 240 (448)
.++++-.-.+++++++..++. ....|+.+.++.+..+...-.+|.. .|...-.++. ..=...|+..+.=+..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~---~R~~aA~~l~--~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ---SRQRYAKELA--QLITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHcCCCCcE
Confidence 445555555555555555533 3444444444444444444433322 2222222222 2224677888888999
Q ss_pred eeeeec
Q 013164 241 FPIWHD 246 (448)
Q Consensus 241 F~I~hd 246 (448)
|+|...
T Consensus 393 f~v~~~ 398 (553)
T PRK10869 393 FTIDVK 398 (553)
T ss_pred EEEEEe
Confidence 998863
No 280
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=67.46 E-value=1.1e+02 Score=31.59 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 013164 210 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 254 (448)
Q Consensus 210 ~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTING 254 (448)
.+.+.+.+++++..++.+++.++..- =+....=-+||.+..++-
T Consensus 156 ~~~~~~~~~~~l~~~~~~l~~~~~~l-~~~~I~AP~dG~V~~~~~ 199 (370)
T PRK11578 156 KQAQIGTIDAQIKRNQASLDTAKTNL-DYTRIVAPMAGEVTQITT 199 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCEEECCCCcEEEeeec
Confidence 33444555556666655555544321 111233345676666653
No 281
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.42 E-value=2.8e+02 Score=33.26 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHHH
Q 013164 390 KALKYTLCNLKWALFWF 406 (448)
Q Consensus 390 kAlK~lLtNlKwllaw~ 406 (448)
.|+.-+++++-|+.+-+
T Consensus 837 Ea~edl~~~i~~l~~~~ 853 (1243)
T KOG0971|consen 837 EALEDLRKHITWLVAVL 853 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666777777776544
No 282
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=67.35 E-value=1.4e+02 Score=29.89 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 195 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 195 ~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.|-..+...+.....++.+....+..|..+...|+.++
T Consensus 181 ~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 181 KFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555566666666676654
No 283
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.33 E-value=57 Score=26.21 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 198 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~ 198 (448)
++.+.+.+++...+.+...+..+|+..+..+.++..+..+..+++.--+=.|+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777777777777777777766666554443443
No 284
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=67.30 E-value=52 Score=31.30 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 238 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~n 238 (448)
+.+.++.|+.+.+.+.++|.+|+...+.+.+.= -..||..|-.|.+.+..+++.....+.++...++--
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v---------vsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDV---------VSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 334556677777777777777766665554321 235677788888888888888888888887766544
No 285
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.26 E-value=48 Score=35.93 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYE---ACLQRLEGEA-RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE 174 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~---~fL~~L~~~~-~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~ 174 (448)
+++|+.+-+.+++..|.=. .--..+.+.. .+..+.+.+..-+++|..|-.+|+..+..++++..+
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888777777766522 1112222111 111112333334566777778888777777766554
No 286
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=67.22 E-value=2.5e+02 Score=32.78 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 196 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 196 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
|=+++..++..+..++.++.....++..++.+..+|
T Consensus 470 ~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l 505 (775)
T PF10174_consen 470 YQKELKELKAKLESLQKELSEKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 444444444444444444444444444444444443
No 287
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=67.15 E-value=1e+02 Score=34.00 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 197 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w 197 (448)
|.++.+.|++...+|++...+|+.+.+++++.++++.
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433344433344444433333
No 288
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.04 E-value=1.3e+02 Score=29.45 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
++..|.+.+...|..+|+....+-+.-..
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek 101 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSDLHKRYEK 101 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444433333333
No 289
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=66.99 E-value=31 Score=34.58 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013164 199 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 236 (448)
Q Consensus 199 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv 236 (448)
++.-|.....++++|+.....++...+.++++|++-|+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666667777777777777777888888888776
No 290
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.85 E-value=1.5e+02 Score=29.84 Aligned_cols=113 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 102 CLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 102 C~e-C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
|.| |+..+-++++...+....=...|..|...++. +.++...+..+-+.+.+.+.....++.++..|++
T Consensus 118 ~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~----------vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~ 187 (243)
T cd07666 118 CIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMG----------VIKRRDQIQAELDSKVEALANKKADRDLLKEEIE 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 181 ELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 181 ~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
+++.+.+.. ++..=.++-.|+.+. ..+..++-..|.-.+.++..
T Consensus 188 ~~e~kve~a---~~~~k~e~~Rf~~~k---~~D~k~~~~~yae~~i~~~~ 231 (243)
T cd07666 188 KLEDKVECA---NNALKADWERWKQNM---QTDLRSAFTDMAENNISYYE 231 (243)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 291
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.58 E-value=1.2e+02 Score=28.93 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 182 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 182 le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
++.+...++..=.++=.....+..++..+..++..+..+......+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433444444444445544444444444444444333
No 292
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=66.56 E-value=19 Score=40.91 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 219 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~ 219 (448)
.+.|+++...++.++++++. +|+..|++||+.|..++..+..++.....|.+
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME~~msqmnsqss~L~~ 653 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEK---KLESKERKLKGKYLTMDQTVKKMKEQSNYLKN 653 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555553 46788899999999998877665544444433
No 293
>PRK07737 fliD flagellar capping protein; Validated
Probab=66.50 E-value=24 Score=38.59 Aligned_cols=48 Identities=15% Similarity=0.413 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013164 167 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 217 (448)
Q Consensus 167 ~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl 217 (448)
.|.++...++.++..++.+ ++..|++||+.|+.++.-+..++.....|
T Consensus 445 ~l~~~i~~l~~~i~~~~~r---l~~~e~ry~~qf~ale~~~s~mnsq~s~L 492 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDR---LKQIEDRYYKKFSAMEKAIQKANEQSMYL 492 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666555543 56668899999999988776655444333
No 294
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=66.39 E-value=1e+02 Score=27.80 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 116 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 116 qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
++.++..+-+.+..|+..+.. -.++......+..+-..+.+..-.++.+...+..++...-.+...+
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-------~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L 74 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-------VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKEL 74 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 444454455555555554321 1233444444555555555555444445555544444444333333
No 295
>PLN02678 seryl-tRNA synthetase
Probab=66.31 E-value=56 Score=35.52 Aligned_cols=91 Identities=14% Similarity=0.294 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 226 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 226 (448)
...++.++.++.+++..+++.|..++.++.+++..+....+.. +..-.+...+..++..+++++..++.++....
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~----~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~- 105 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA----TELIAETKELKKEITEKEAEVQEAKAALDAKL- 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566777888888899999999999999888887643221111 11222333444444444444444444444332
Q ss_pred HHHHHhhcccCCCceeeeec
Q 013164 227 HLELLKRTNVLNDAFPIWHD 246 (448)
Q Consensus 227 ~Ld~L~ktNv~nd~F~I~hd 246 (448)
++==|+...-=+++.|
T Consensus 106 ----~~iPNi~~~~VP~G~d 121 (448)
T PLN02678 106 ----KTIGNLVHDSVPVSND 121 (448)
T ss_pred ----HhCCCCCCccCCCCCC
Confidence 2223555555555543
No 296
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=66.19 E-value=2.3e+02 Score=31.97 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKR-----FK--ELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~-----l~--~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
+.+++.+.+++..|.+++.+.+.++......... ++ +...---+++...+.++.++|++.+..+
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~ 483 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAK 483 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777778888888777777666654322222 22 2222334556666666666666444443
No 297
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.04 E-value=1.3e+02 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 013164 103 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 133 (448)
Q Consensus 103 ~eC~d~Lle~Ld~qle~~-~~---E~~~Y~~fL~~ 133 (448)
.++.-..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 456666666677776655 22 23346677765
No 298
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.36 E-value=21 Score=39.00 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.2
Q ss_pred eeeeecCCCceEEe
Q 013164 296 IKIIPMGSYPRIMD 309 (448)
Q Consensus 296 y~LvPmGS~SkI~~ 309 (448)
..-+|-|||.+-+-
T Consensus 211 ~~YiPsgSf~~avl 224 (475)
T PRK13729 211 LPYIPSGSFAKAML 224 (475)
T ss_pred CceeCCCCeEEEEE
Confidence 44679999887653
No 299
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.04 E-value=2.2e+02 Score=34.20 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013164 114 DKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 114 d~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
...+..++.+.+.|..-.+++.+
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888877777664
No 300
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=64.96 E-value=1.7e+02 Score=31.30 Aligned_cols=20 Identities=15% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYE 128 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~ 128 (448)
.++.|..++..+...+....
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~ 305 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLS 305 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666655555444
No 301
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=64.92 E-value=2.3e+02 Score=33.61 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL--EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e--E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
|...|++.++.+..+..++.+++..+..++..|+.- =...-+.+..++.++.+.-.+-.++..-...+...|..+++.
T Consensus 775 E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 775 ELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444455455555555554444444210 001223344444455444444455655556666666665543
Q ss_pred c---cCC---CceeeeecCCeeeec
Q 013164 235 N---VLN---DAFPIWHDGEFGTIN 253 (448)
Q Consensus 235 N---v~n---d~F~I~hdG~fGTIN 253 (448)
- |++ +.|.==.||.|.+|+
T Consensus 855 rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 855 RLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hchHHHHHHHHHHhhccCCceeeee
Confidence 2 222 445444789998886
No 302
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.85 E-value=25 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 201 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n 201 (448)
.+..++-+..+.+....+..||+|.+.+..+++.|+.+...+.....++|+..+
T Consensus 207 ~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 207 RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 334444455556777888899999999999999999999999888888887544
No 303
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.71 E-value=1.8e+02 Score=30.14 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 226 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 226 (448)
++.+.+..+-..+..++.+|-.+-.+.-.+|..+-.+...+...=..|..++-.+.....++.++.+.+.+.|.-...
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444445555555555555555555555444444433
No 304
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=64.68 E-value=1e+02 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013164 114 DKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 114 d~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
..++++.....+.|+.-++.|..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~ 27 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQ 27 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543
No 305
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=64.56 E-value=1.1e+02 Score=34.59 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 106 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 106 ~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
++.+.+.|.+++..++... ....+.. + .....+....++...|+++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~-------------~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-E-------------KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-h-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888774432 2222221 0 0111222333333444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013164 186 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 236 (448)
Q Consensus 186 ~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv 236 (448)
.+.++.+.... +--+ .+...+.++++.|..++.....+++.|+..++
T Consensus 67 i~~IE~qn~~L-qvq~---~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGL-QVQS---ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCch-hhHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 33333222111 1111 22333466777788888888888888887655
No 306
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.48 E-value=2.5e+02 Score=32.37 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
+..++..+.++++.|....+.+.+.
T Consensus 424 l~~~l~~~tk~reqlk~lV~~~~k~ 448 (716)
T KOG4593|consen 424 LAEELPQVTKEREQLKGLVQKVDKH 448 (716)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3345555666666666666655543
No 307
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=63.93 E-value=1.7e+02 Score=33.40 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 205 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 205 (448)
.+|.++++.|..+...++++|+.++.+....+..=++.|.+..+.+.
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555544444444455555555443
No 308
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=63.79 E-value=2.2e+02 Score=33.41 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=7.1
Q ss_pred HHHHHHHHHHh
Q 013164 125 EAYEACLQRLE 135 (448)
Q Consensus 125 ~~Y~~fL~~L~ 135 (448)
+.|..++++|.
T Consensus 903 ~~~e~~~~~l~ 913 (1259)
T KOG0163|consen 903 KNYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHHhh
Confidence 35777777665
No 309
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=63.78 E-value=1.3e+02 Score=29.35 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~L 228 (448)
+....++++.++.|.+....+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444
No 310
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.61 E-value=53 Score=30.93 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 203 FQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 203 ~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
++.++...+.+.+.++.|.+..
T Consensus 166 lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 166 LKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 311
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=63.41 E-value=28 Score=29.33 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=7.0
Q ss_pred HHHHHHhHHH
Q 013164 195 RYWQEFNNFQ 204 (448)
Q Consensus 195 ~~w~e~n~~q 204 (448)
+..++||+++
T Consensus 43 ~lLheYNeiK 52 (83)
T PF07061_consen 43 KLLHEYNEIK 52 (83)
T ss_pred HHHHHHhHHH
Confidence 4567788775
No 312
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=63.18 E-value=23 Score=37.46 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCC-----eeeecccc
Q 013164 206 QLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE-----FGTINNFR 256 (448)
Q Consensus 206 ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~-----fGTINGlR 256 (448)
++.++++++.+++.++..+..-++.=...-++..++.|.+.+. -|+.+-+|
T Consensus 274 k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~~~yly~gs~~~~~ 329 (406)
T PF02388_consen 274 KLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDEAYYLYGGSDEEYR 329 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTEEEEEEEEE-CGCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCEEEEEECccchhhH
Confidence 3344444555555555655555555555567888888877652 25555544
No 313
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=63.13 E-value=1.5e+02 Score=28.71 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 177 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 177 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
..+..++.+...+...-.++=..+..++.++.++...+..|.++...++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555566666666666666666666666544
No 314
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=62.88 E-value=58 Score=28.35 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 013164 144 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 222 (448)
Q Consensus 144 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e-~n~~q~ql~~~~~e~~sl~~q~~ 222 (448)
..|+...++-.|+|-.-+.+.|.++|.+...+..||.+++.+...++. .-|-. -..---.-..++.++..+..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 356666766677777788889999999999999999988876544442 01100 00000001234566677777777
Q ss_pred HHHHHHHHHhhcc
Q 013164 223 VSQAHLELLKRTN 235 (448)
Q Consensus 223 ~~~~~Ld~L~ktN 235 (448)
.....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 7777777776554
No 315
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.80 E-value=89 Score=25.95 Aligned_cols=6 Identities=50% Similarity=1.027 Sum_probs=2.7
Q ss_pred HHHHHH
Q 013164 194 ERYWQE 199 (448)
Q Consensus 194 ~~~w~e 199 (448)
..-|++
T Consensus 62 ~~~WQe 67 (79)
T COG3074 62 QNGWQE 67 (79)
T ss_pred HHHHHH
Confidence 344543
No 316
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.70 E-value=2.1e+02 Score=31.67 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 013164 333 MTLFLSCLKDF 343 (448)
Q Consensus 333 M~afL~cl~q~ 343 (448)
...|.+.|.++
T Consensus 480 ~~~~~~~l~~l 490 (563)
T TIGR00634 480 AQAIAKKLAQL 490 (563)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 317
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=62.67 E-value=1.9e+02 Score=29.67 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le 183 (448)
++..+...++++.+-|++|+
T Consensus 99 dlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444
No 318
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.44 E-value=1.8e+02 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+.....+|.+=+++...++..|+++..++++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666667778888888888888888877776655
No 319
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.37 E-value=90 Score=25.90 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 013164 209 AHQEERDAISS 219 (448)
Q Consensus 209 ~~~~e~~sl~~ 219 (448)
.-++.+++|.-
T Consensus 64 ~WQerlrsLLG 74 (79)
T COG3074 64 GWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHh
Confidence 33444444433
No 320
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.83 E-value=3.6e+02 Score=32.69 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=4.4
Q ss_pred hhhHHHHHH
Q 013164 387 NWTKALKYT 395 (448)
Q Consensus 387 ~WTkAlK~l 395 (448)
..-|||-|.
T Consensus 592 e~eka~~~a 600 (1141)
T KOG0018|consen 592 EYEKAVQFA 600 (1141)
T ss_pred HHHHHHHHH
Confidence 445555443
No 321
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=61.70 E-value=89 Score=31.60 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=15.8
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 013164 326 STRYDKAMTLFLSCLKDFAEFA 347 (448)
Q Consensus 326 ~~kFD~AM~afL~cl~q~~~~~ 347 (448)
...||....+||....+.|-.+
T Consensus 210 ~~~~~Is~~~~lt~~~~~c~~~ 231 (292)
T KOG4005|consen 210 DEEFDISRLEELTESLLACITA 231 (292)
T ss_pred chhhhHHHHHHHHHHHHHHhhh
Confidence 3468888888888777766554
No 322
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=61.70 E-value=2.7e+02 Score=31.22 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHhhcC-CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 77 FHSTITVLKRAFEIATS-QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~-~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~ 132 (448)
+.+++..|..-+.-.+. -++.|----.+=-..+-+.++.-++..++|..++..-.+
T Consensus 253 id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~ 309 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE 309 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566555444432222 112221112233344566677777777777777765444
No 323
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=61.53 E-value=30 Score=29.41 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 013164 212 EERDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
+|..++..++..-..+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 444555555555556666666644
No 324
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=61.18 E-value=1.1e+02 Score=26.64 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
+....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554433322211 2333332 2334556777777777888888888888888888877888
Q ss_pred HHHHHHHHHHHHHhH
Q 013164 188 RFKELEERYWQEFNN 202 (448)
Q Consensus 188 ~l~~eE~~~w~e~n~ 202 (448)
.++.+-++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776655555543
No 325
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.12 E-value=1.2e+02 Score=27.03 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 223 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~ 223 (448)
..++.+-..+..++..+..+.......+...+ ...+.++..|=.+.+.++..+.++..+..-|..|++.
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444333333332222 2234455556666666666666666666666666653
No 326
>PF13514 AAA_27: AAA domain
Probab=61.09 E-value=3.6e+02 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888877776653
No 327
>PRK08724 fliD flagellar capping protein; Validated
Probab=61.01 E-value=41 Score=38.35 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
+.|.++...++.++..++. +++..|++||+.|+.++..+..++.....|.
T Consensus 620 ~sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~ 669 (673)
T PRK08724 620 KSLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMM 669 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555565555554 3567788999999999887766555444443
No 328
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=60.91 E-value=1.1e+02 Score=26.23 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 119 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
.+.++++.|...+.-++.+.. .+...++ ..+..+-.++..+..+|.++++++..+-..+.
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~-~l~~~d~-~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~ 68 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEERE-ALISGDI-DELEELVEEKQELLEELRELEKQRQQLLAKLG 68 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777776665432 1111121 24455666777788888888888777665443
No 329
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.91 E-value=1.6e+02 Score=28.21 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 206 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l-~~eE~~~w~e~n~~q~q 206 (448)
..++.+-..|..++++|+.+..++......++....+. ..+++.+=.++..++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665554443 33344444444444443
No 330
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=60.82 E-value=81 Score=32.93 Aligned_cols=21 Identities=14% Similarity=0.329 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEAC 130 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~f 130 (448)
++.++.+-.++.+.+..|+.-
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEE 22 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEE 22 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHH
Confidence 455666666666666666643
No 331
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=60.77 E-value=49 Score=28.36 Aligned_cols=80 Identities=23% Similarity=0.408 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c---------------cC-C--------------HHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR---D---------------VL-S--------------EADFLKEKLKIEE 156 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~~---~---------------~~-~--------------ee~l~~e~~~Le~ 156 (448)
++.++.+++.+...++.|....+.|+.-.. + .+ . +-++.+..+-++.
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 567888999999999999877766652110 0 00 0 0112333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
..+.+...++.++++...+.+++..++....++
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665555544433
No 332
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=60.72 E-value=1.4e+02 Score=32.80 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
.+|.+++.-|..=-.++++.+..+.-.|+.+|.++|++...++ ...+-|+..+-++..+..+........
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~----------s~~~~q~~~~h~~ka~~~~~~~~l~~~ 377 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLE----------SAGQTQIFRKHPRKASILNMPLVLTLF 377 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHhHHHHHHhhhHhhhhhhchHHHHHH
Confidence 3444444333333345566666666666666666666554443 234566666777777777777777777
Q ss_pred HHHHhhcccCCCceeeeecC------------CeeeeccccCCCCC
Q 013164 228 LELLKRTNVLNDAFPIWHDG------------EFGTINNFRLGRLP 261 (448)
Q Consensus 228 Ld~L~ktNv~nd~F~I~hdG------------~fGTINGlRLGrlp 261 (448)
++.++..|=|-.+|-=.... -=.+||.+|+--..
T Consensus 378 ~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~ 423 (554)
T KOG4677|consen 378 YECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWN 423 (554)
T ss_pred HHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhh
Confidence 77777776666555432221 12467777776543
No 333
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=60.53 E-value=56 Score=32.22 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 84 LKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 84 l~~lFdIlS~~s~iDhPL--C~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~ 132 (448)
+....+-|.+-..|++-- =+|=++...+ ++.+++..+.+++.|...|+
T Consensus 107 ~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 107 FDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444444433443321 2344444444 55555666666666655555
No 334
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=60.52 E-value=1.8e+02 Score=28.69 Aligned_cols=108 Identities=18% Similarity=0.271 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc----cccCCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHH
Q 013164 104 ECMRVLSDKLDKEV-DDVTRDIEAYEACLQRLEGEA----RDVLSEADFLKEKLKIEE----EE---RKLEAAIEETEKQ 171 (448)
Q Consensus 104 eC~d~Lle~Ld~ql-e~~~~E~~~Y~~fL~~L~~~~----~~~~~ee~l~~e~~~Le~----EE---~~L~~eL~~lE~e 171 (448)
+..+.+.+.|+..+ +++..=++.|......+++-. ..-++-+.....+++|.. .+ .+.+++++.++..
T Consensus 75 ~~~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 75 EKCDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKV 154 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44455666665555 445555555665555444321 111223333344444432 11 2234445555555
Q ss_pred HHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 013164 172 NAEVNAELKE----L--------ELKSKRFKELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 172 ~~~l~~el~~----l--------e~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 211 (448)
.+.++.+|.+ | .--.+.+-..+.+||.+...+..+|.+..
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~ 206 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVM 206 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443332 1 11123445667777777777766665543
No 335
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=60.44 E-value=33 Score=32.89 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=10.1
Q ss_pred CcccCCcchHHHHHH
Q 013164 94 QTQVEQPLCLECMRV 108 (448)
Q Consensus 94 ~s~iDhPLC~eC~d~ 108 (448)
..-=||++|-||.|-
T Consensus 96 DGICDy~~CCDGSDE 110 (176)
T PF12999_consen 96 DGICDYDICCDGSDE 110 (176)
T ss_pred CCcCcccccCCCCCC
Confidence 344578888877664
No 336
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.28 E-value=87 Score=26.61 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~ 132 (448)
++.+...+..+.+.-..--+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN 53 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERN 53 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444333333
No 337
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.06 E-value=1.3e+02 Score=26.83 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l 175 (448)
.+-....+.+.+|+.+..++
T Consensus 51 ~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 51 AQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444333333
No 338
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=59.71 E-value=2.3e+02 Score=29.75 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 137 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~ 137 (448)
....+.|+.|+..+.++.+..+.-|+..+.+
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777766666655543
No 339
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=59.70 E-value=1.3e+02 Score=27.60 Aligned_cols=75 Identities=27% Similarity=0.374 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~--~~~--ee~------l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
..++.++..+..+++........+.--..+ .+. --+ ..+-...||+-...+.++|+.||.+.+.+.++|.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666655421111 000 001 1223345777788888888888888888888777
Q ss_pred HHHHH
Q 013164 181 ELELK 185 (448)
Q Consensus 181 ~le~e 185 (448)
+|+.-
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 77654
No 340
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=59.41 E-value=7.4 Score=35.75 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.2
Q ss_pred CccceeeEEecCCCCchhhHHHHHHHhh
Q 013164 371 DKVENYSITQSFNKQENWTKALKYTLCN 398 (448)
Q Consensus 371 dkI~g~SI~l~~n~~e~WTkAlK~lLtN 398 (448)
.-|-++++-+-.|+++.|.++++||+.|
T Consensus 110 ~~v~~~~~diRgntD~sW~Rg~~~l~~n 137 (140)
T PF11684_consen 110 KVVRGRSVDIRGNTDESWRRGARYLVKN 137 (140)
T ss_pred CEEeeeeeeEecCcHHHHHHHHHHHHHh
Confidence 3456888888889999999999999887
No 341
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.39 E-value=4e+02 Score=33.01 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQ 171 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e 171 (448)
.++.+|..++..+..++.++++.+.++
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~ 848 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECLQKE 848 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444333
No 342
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.29 E-value=37 Score=34.99 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 192 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e 192 (448)
+.|-+.|.-|++.||+..++|+.+..+++.|+..|.+.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667778888888888888888888777766654
No 343
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.26 E-value=86 Score=33.62 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
.++.++.++-+++..+++.|.+++.++.+++..+.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777888888888888888888888887643
No 344
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=59.23 E-value=2.4e+02 Score=29.69 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~L 228 (448)
+..++.+.+..+..|+.....+
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 345
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.16 E-value=1.6e+02 Score=32.59 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=12.8
Q ss_pred CccccCCCCCCCceEEE
Q 013164 29 SEASQSGKAMDESFVVI 45 (448)
Q Consensus 29 ~~~~~~~~~~~esfv~l 45 (448)
+-+..+++.-++.||.+
T Consensus 180 Gyt~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 180 GYTRNPSRTDDEGFVTL 196 (508)
T ss_pred CccCCCCccCCCCeeee
Confidence 55667777778889885
No 346
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=58.98 E-value=1.3e+02 Score=29.35 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.9
Q ss_pred ecCCCc
Q 013164 300 PMGSYP 305 (448)
Q Consensus 300 PmGS~S 305 (448)
-+|.|+
T Consensus 189 ~~GEF~ 194 (228)
T PRK06800 189 QFGEFV 194 (228)
T ss_pred ccccee
Confidence 345554
No 347
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.82 E-value=32 Score=29.96 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
+++++...+.+++.+++.+.++|.+|+..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555555444
No 348
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.75 E-value=93 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
..++..+.++.+++..+++.|..++..+.+++..+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888888888888888888664
No 349
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.70 E-value=1.9e+02 Score=28.48 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHH
Q 013164 209 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQAC 278 (448)
Q Consensus 209 ~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~ 278 (448)
+.++++..+..+++....++..|.+.--| .+..|....+-.. -|..+--|..|-.||....
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~-sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~ 226 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY-STITISLYEPESI--------KPESPSFGSRFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce-EEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHH
Confidence 33444444444445555445444433222 3455555544110 1123445666655555444
No 350
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.60 E-value=2e+02 Score=29.20 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 013164 116 EVDDVTRDIEAYEACL 131 (448)
Q Consensus 116 qle~~~~E~~~Y~~fL 131 (448)
+|+-+.-|-+.-.+-|
T Consensus 60 RL~HLS~EEK~~RrKL 75 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKL 75 (292)
T ss_pred hhcccCHHHHHHHHHH
Confidence 3333333333333333
No 351
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=58.45 E-value=82 Score=26.51 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 200 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~ 200 (448)
.++|.+++.+|+..+..|-..+...+.|...|+.+- +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456777888888888888888888888877776543 355444
No 352
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.41 E-value=2.4e+02 Score=29.63 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 013164 212 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 260 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrl 260 (448)
+++..+++++..++.+++.++..--++..-.=-+||.++.++ .+.|..
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~~ 274 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQL 274 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCCE
Confidence 455566777777777777776554333444445678777766 466653
No 353
>PRK10869 recombination and repair protein; Provisional
Probab=58.37 E-value=2.6e+02 Score=31.04 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=5.5
Q ss_pred ceeeeCCccce
Q 013164 365 PYKIENDKVEN 375 (448)
Q Consensus 365 PY~I~~dkI~g 375 (448)
.|.|.+...++
T Consensus 502 ~~~v~k~~~~~ 512 (553)
T PRK10869 502 HFFVSKETDGG 512 (553)
T ss_pred EEEEeccccCC
Confidence 45555544444
No 354
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.35 E-value=26 Score=38.27 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 013164 212 EERDAISSKIE 222 (448)
Q Consensus 212 ~e~~sl~~q~~ 222 (448)
+|...|+.|++
T Consensus 111 aE~~~Lk~Ql~ 121 (475)
T PRK13729 111 QDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 355
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.03 E-value=2.9e+02 Score=30.41 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 013164 81 ITVLKRAFEIA 91 (448)
Q Consensus 81 i~~l~~lFdIl 91 (448)
+.-+..+|+=+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455555444
No 356
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.72 E-value=84 Score=36.72 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
..+.++++......+...|+++..+.+.+.+.+++.-.+.-.++-++..+..+..+++.++.....+|...
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456666666667777777777777777777777767777777777777777777777777777776543
No 357
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.61 E-value=2.1e+02 Score=29.61 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
|--.+.|+..|++-+....+-+.||.+|+.++.++.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666665553
No 358
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=57.49 E-value=1.1e+02 Score=25.28 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~--~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
+-..+++...+.++...-..+...|..+..+..++.+.+.. .+...- +...+..+..+...+..++...+..+++|+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444555666666666666666666665555555442221 122222 444555555555666666666666666664
No 359
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=57.29 E-value=1.5e+02 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
.++|..++..++..+|.++.+|+..+.+++.+.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 466667777788888888888877777776543
No 360
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=57.08 E-value=2e+02 Score=28.25 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 166 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+..|..+.++..+++-+....+.|..-++.|-...-.+.-++..+.+.+.....+-+++...+.+|.+
T Consensus 105 E~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 105 EAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 33444445555555555555555555555555555555555555555555555555555555544443
No 361
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.81 E-value=1.2e+02 Score=34.70 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKE--------------LELKSKRFKELEERYWQEFNNFQFQLIAHQEE 213 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~--------------le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e 213 (448)
...++|.++|...|++...+..+|-. |..++..+....+++|..++.-..++.+...+
T Consensus 61 ~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q 132 (660)
T KOG4302|consen 61 ESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ 132 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544444332 33444455555555666665555555444333
No 362
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=56.22 E-value=2.8e+02 Score=30.24 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhcC
Q 013164 275 GQACLLLHTMCQYFR 289 (448)
Q Consensus 275 GQ~~LLL~tla~~l~ 289 (448)
|..+=|..+|+..+|
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 444556666666543
No 363
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.80 E-value=1.4e+02 Score=33.06 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
.-|.++++-|.+++ +.|+..++.+
T Consensus 337 ~dL~~R~K~Q~q~~----~~~r~ri~~i 360 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEV----KQHRIRINAI 360 (508)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33555555555554 4444444443
No 364
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.63 E-value=47 Score=30.48 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNA 177 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~ 177 (448)
|.+...|.++++.|..|.+++..
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 365
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=55.57 E-value=8.4 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhcccCCCceee
Q 013164 220 KIEVSQAHLELLKRTNVLNDAFPI 243 (448)
Q Consensus 220 q~~~~~~~Ld~L~ktNv~nd~F~I 243 (448)
+++..+..|.+..+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 455566778888888888765544
No 366
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=55.45 E-value=77 Score=31.15 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013164 215 DAISSKIEVSQAHLELLK 232 (448)
Q Consensus 215 ~sl~~q~~~~~~~Ld~L~ 232 (448)
+.+++++..++.+|+.++
T Consensus 112 ~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 112 EAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444454444
No 367
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=55.33 E-value=67 Score=36.65 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
|+.+|..|++|+++ | ++......++..+.+-++.+.++.++..++||+.-|.+....+.
T Consensus 2 LRdkL~~Lq~ek~~---E---~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---E---RQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666665542 2 22222333444445567778888888888888888877655554
No 368
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.23 E-value=2.5e+02 Score=28.72 Aligned_cols=27 Identities=7% Similarity=0.303 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+..=|.++..++++....+.-++.|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665544
No 369
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.94 E-value=4.8e+02 Score=31.90 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 242 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~ 242 (448)
.|.+..+..+..+..+.+.......+.|++.|+-+.++...+.
T Consensus 281 ~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 281 MDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3344444444444445555555566677777877777765554
No 370
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=54.76 E-value=2.1e+02 Score=30.12 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~-~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
.+...|.++-+.|+.+..++.++++++-.+..+++ ++=.+|-..+|+-+..+.++++.+..+.
T Consensus 144 ~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 144 AENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444433333332 2223566666777766666665554443
No 371
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=54.68 E-value=1e+02 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
+..|..+|+++.+.+..+|..|..|.
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555566666666666665555443
No 372
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=54.62 E-value=3.8e+02 Score=30.66 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=16.1
Q ss_pred CchhhHHHHHHHhhHHHHHHHH
Q 013164 385 QENWTKALKYTLCNLKWALFWF 406 (448)
Q Consensus 385 ~e~WTkAlK~lLtNlKwllaw~ 406 (448)
-++|...+|-+..+++=+|-++
T Consensus 576 ~e~llP~Lk~~~~~~~q~Le~~ 597 (632)
T PF14817_consen 576 LERLLPRLKRLVQKAQQALEYC 597 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888877777776554
No 373
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.57 E-value=1.2e+02 Score=24.92 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
++....++..+...+..|..-+.... . ..+..++ ..-+..|+.....+..++..++.+.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555533332221 1 1222222 334456777777788888888888888888888877777
Q ss_pred HHHHHHHHHHHH
Q 013164 187 KRFKELEERYWQ 198 (448)
Q Consensus 187 ~~l~~eE~~~w~ 198 (448)
+.++.+.++--.
T Consensus 90 k~~e~L~e~~~~ 101 (123)
T PF02050_consen 90 KKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766553333
No 374
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=54.50 E-value=1.7e+02 Score=26.60 Aligned_cols=58 Identities=10% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 175 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 175 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
|.+.|..+..+.++..+.-+..=.+.+..+.++..+.++.+++.....-....++.|+
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444455666666677777777777766666666666654
No 375
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=54.36 E-value=48 Score=25.13 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
-...+..+..++..|+.+...|..++..|+.|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555566677777777777777766666543
No 376
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=54.36 E-value=3e+02 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.|++|++.+.+.+.++..+++++...+++|..+.+.|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666666666666666666666665555554
No 377
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=54.32 E-value=80 Score=27.40 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 204 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q 204 (448)
=.+|-+++..+-+...+|+.+|..+..-..+-...+ +.+.+|+.++
T Consensus 24 Yk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~K 69 (101)
T PF07303_consen 24 YKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHH
Confidence 344555666666666666666666655555556666 7788888885
No 378
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=54.14 E-value=1.2e+02 Score=27.53 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKSKRFKELEE 194 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~~~l~~eE~ 194 (448)
++++.+++.+--...+.....+...++
T Consensus 57 a~~~L~~~~~~~~~i~e~~~kl~~~~~ 83 (126)
T PF09403_consen 57 AEAELAELKELYAEIEEKIEKLKQDSK 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 344444443333333444444444333
No 379
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=54.13 E-value=2.6e+02 Score=30.25 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 013164 270 INAAWGQACLLLHTMCQYFR 289 (448)
Q Consensus 270 INAAwGQ~~LLL~tla~~l~ 289 (448)
||--+--+..||.+++...+
T Consensus 393 iNiiLalm~VlLvfVSTIa~ 412 (455)
T KOG3850|consen 393 INIILALMTVLLVFVSTIAN 412 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666667777777777663
No 380
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=4.2e+02 Score=31.59 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=40.4
Q ss_pred eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCc-------------eeeeecCCCceEEe
Q 013164 243 IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYR-------------IKIIPMGSYPRIMD 309 (448)
Q Consensus 243 I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~-------------y~LvPmGS~SkI~~ 309 (448)
|-|=.+=||.-.+|.-+- +..-.-.|+--.|--+.++...+.+.+.. |+ . |+-+-.|.|+.|-.
T Consensus 804 i~~lE~g~~~a~lr~~~~-slk~~l~e~ar~Wasl~~~~~vl~e~l~~-~k-e~rlP~vi~~A~~~F~hlT~G~Yt~Iy~ 880 (984)
T COG4717 804 IAQLEGGGTVAELRQRRE-SLKEDLEEKARKWASLRLAVQVLEEALRL-FK-ERRLPAVIQEASEFFMHLTDGRYTGIYT 880 (984)
T ss_pred HHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hhhchHHHHHHHHHHhhccCCceeeeec
Confidence 334334466777776542 23456778888888888888888876641 11 1 33445688888853
No 381
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=53.73 E-value=1e+02 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=17.2
Q ss_pred chhhHHHHHHHh--hHHHHHHHHhhCCccCCc
Q 013164 386 ENWTKALKYTLC--NLKWALFWFVGNTNFQPV 415 (448)
Q Consensus 386 e~WTkAlK~lLt--NlKwllaw~~~~t~~~~~ 415 (448)
-.|-++||-||. .-=|-..-++--++.+|+
T Consensus 521 ~~q~rvmkaLlelp~~yWsqfl~v~~~~~~~~ 552 (604)
T KOG3564|consen 521 KTQPRVMKALLELPLEYWSQFLGVEPVNTDPL 552 (604)
T ss_pred hhhHHHHHHHHhCCHHHHHHhhccccccCCCc
Confidence 578899986653 344554444444455543
No 382
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.72 E-value=61 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
+||.+-.++...+..+++|.+++..++++++.-.++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666554433
No 383
>PRK10698 phage shock protein PspA; Provisional
Probab=53.49 E-value=2.3e+02 Score=27.78 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=6.2
Q ss_pred HHHHHHHhhcC
Q 013164 83 VLKRAFEIATS 93 (448)
Q Consensus 83 ~l~~lFdIlS~ 93 (448)
.++++++|+.+
T Consensus 3 if~Rl~~ii~a 13 (222)
T PRK10698 3 IFSRFADIVNA 13 (222)
T ss_pred HHHHHHHHHHh
Confidence 44566666654
No 384
>PF13166 AAA_13: AAA domain
Probab=53.45 E-value=3.7e+02 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 013164 258 GRLPKIPVEWDEINAAWGQACLLLHTMCQY 287 (448)
Q Consensus 258 Grlp~~~V~W~EINAAwGQ~~LLL~tla~~ 287 (448)
|..|..-.+.-|=|+ +-|++.|+.-
T Consensus 494 ~~~~~~~LSEGEk~~-----iAf~yFla~l 518 (712)
T PF13166_consen 494 GSKPAKILSEGEKRA-----IAFAYFLAEL 518 (712)
T ss_pred CCcccCccCHHHHHH-----HHHHHHHHHH
Confidence 555667788888753 5566666643
No 385
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=53.23 E-value=88 Score=35.12 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
.+++++-.++.+++++|+++.++++++++.+
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444433
No 386
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.15 E-value=4.1e+02 Score=32.94 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHhhcccCCCceeeeecCCee
Q 013164 229 ELLKRTNVLNDAFPIWHDGEFG 250 (448)
Q Consensus 229 d~L~ktNv~nd~F~I~hdG~fG 250 (448)
..|+..+-.|..|..-++.-+|
T Consensus 948 s~l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 948 SLLHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHHHhHHHHHHHhhhhhc
Confidence 4444555555666666666665
No 387
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=53.15 E-value=83 Score=35.32 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 166 EETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 166 ~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..++++.+.++++|.+++.+..+++
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~ 583 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAE 583 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455556666655555554
No 388
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.70 E-value=2.3e+02 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=11.6
Q ss_pred CchhhHHHHHHHhhHHHHH
Q 013164 385 QENWTKALKYTLCNLKWAL 403 (448)
Q Consensus 385 ~e~WTkAlK~lLtNlKwll 403 (448)
..+|+...+-+=..++.++
T Consensus 293 ~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHCCHCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcccH
Confidence 4688876665555555543
No 389
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=52.70 E-value=2.8e+02 Score=28.56 Aligned_cols=121 Identities=6% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccc-cCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 013164 105 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLE--GEARD-VLSEADFLKEKLKIEEEERKLEA-------AIEETEKQNAE 174 (448)
Q Consensus 105 C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~--~~~~~-~~~ee~l~~e~~~Le~EE~~L~~-------eL~~lE~e~~~ 174 (448)
=.+.-++.++++++.++.+...|+.--.-+. .+... ...-.++..++.+++.+...+.. ++..++.+.+.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3445556666777777777766664322111 10000 00123344455555555544432 34455555555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 175 VNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 175 l~~el~~le~e~~~l-~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
++++|.+...+...- ......--.+|..++++..-.+.-..++..+++.++
T Consensus 254 l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544332210 001111123555666666666666666666666665
No 390
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.61 E-value=3.2e+02 Score=28.93 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
.+.+|..+-. ..|+.+++-..-+..++..+-.+.......=.+.=..|+...-...+...++..+..+++..+.+++
T Consensus 242 ~L~kl~~~i~---~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 242 QLDKLQQDIS---KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 4444444444455555555544443332222222233333333344444444444444444444443
No 391
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.60 E-value=97 Score=34.77 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
+.++++.+|++.+++++++.+++.+.
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666554
No 392
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=51.53 E-value=4.6 Score=35.55 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 193 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE 193 (448)
+|+.+.-++.+++..||.+...+..++.+|..+..+|+.++
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666666666666655555444
No 393
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.42 E-value=2.3e+02 Score=31.70 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhc
Q 013164 123 DIEAYEACLQRLEG 136 (448)
Q Consensus 123 E~~~Y~~fL~~L~~ 136 (448)
+.+.|+.-++.|+.
T Consensus 192 ~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 192 DLEEYKKRLEAIKK 205 (555)
T ss_pred hHHHHHHHHHHHHh
Confidence 33445555555544
No 394
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=51.38 E-value=2.7e+02 Score=27.96 Aligned_cols=40 Identities=30% Similarity=0.269 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013164 211 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 211 ~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGr 259 (448)
+.+..+++++++.++.+|++ + .-.=-+||.+..++ ...|.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~---~-----~i~AP~dG~V~~~~-~~~G~ 224 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLEL---T-----YVKAPIDGRVLKIH-AREGE 224 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhc---C-----EEECCCCeEEEEEe-cCCCC
Confidence 34445555566666554442 2 12223577776665 46664
No 395
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.19 E-value=1.2e+02 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
.....-++...+++-+.|+..+..=+..|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777778877777777788776
No 396
>PLN02320 seryl-tRNA synthetase
Probab=51.03 E-value=1.2e+02 Score=33.58 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
.++..+.++.+++..++++|..++..+.+++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666677777777777777777776654
No 397
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=50.90 E-value=2e+02 Score=26.37 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 199 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e 199 (448)
..|..-|++||+++..|..+++..+-. |+++.+.|.+.
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~r---LeQEsKAyhk~ 91 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEWR---LEQESKAYHKA 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 556677788888888888888887753 56666555543
No 398
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=50.73 E-value=1.5e+02 Score=33.61 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
|+.++|....+|..+|+++-...+++.++|...+.|+.+|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444445555554444444444444444444443
No 399
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.65 E-value=51 Score=26.03 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
+..+..++..++++++++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 400
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.57 E-value=4.4e+02 Score=30.17 Aligned_cols=89 Identities=13% Similarity=0.250 Sum_probs=44.7
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHH
Q 013164 85 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDI-EAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEA 163 (448)
Q Consensus 85 ~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~-~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~ 163 (448)
.++-.||+..+..|. +|...|-. +-.-+++...+- ..... .++... --..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~RRnLr~---~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRARRNLRS---DIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHHHhhhhh---HHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 577778999998885 45554433 333333332221 11111 111110 00124455666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le 183 (448)
.+..+..-++.+..++..-.
T Consensus 86 ~v~km~~t~~~l~s~ls~~k 105 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSK 105 (655)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 66666666665555554433
No 401
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.32 E-value=2.2e+02 Score=26.72 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 206 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 206 (448)
..+.|.+.|...+..|+.+...+...+..+......+++.|.+.-++++.+.-.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 345566666666666666666666555555555556666666655566655443
No 402
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.99 E-value=4.7e+02 Score=30.35 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 182 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 182 le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
+......|...=+..-..+-.++.++.+...+++-..-+..+++..+.+|++.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433344555666666666666666666666666677777776653
No 403
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.74 E-value=2.7e+02 Score=32.79 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 208 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~ 208 (448)
+...+++..+++.+.+...++..|.++++++...+..+-.+.-++++.++.|+.
T Consensus 663 K~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 663 KGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444445555555555544444444444444444444443
No 404
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.73 E-value=2e+02 Score=26.09 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le 183 (448)
.+.++|.++....+.+.+.+..++
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444444444443
No 405
>PLN02372 violaxanthin de-epoxidase
Probab=49.70 E-value=2.3e+02 Score=30.91 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHH
Q 013164 144 EADFLKEKLKIEEE----ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ-LIAHQEERDAIS 218 (448)
Q Consensus 144 ee~l~~e~~~Le~E----E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q-l~~~~~e~~sl~ 218 (448)
+.++.+-.+.+.+| +++++++.++++++...+-+.. .+.+..++|++.|..|.++++.-+.+ +..+..+...++
T Consensus 367 ~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~ve 445 (455)
T PLN02372 367 EKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRV-ALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVE 445 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013164 219 SKIEVSQ 225 (448)
Q Consensus 219 ~q~~~~~ 225 (448)
..+..+.
T Consensus 446 k~f~~~~ 452 (455)
T PLN02372 446 KLFGRAL 452 (455)
T ss_pred HHhhhcc
No 406
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=49.27 E-value=3.3e+02 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYE--ACLQRLE 135 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~--~fL~~L~ 135 (448)
.|...--+.|+.+|+.+.++.+.+. .|+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 5778888999999999999888743 3444444
No 407
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.24 E-value=1.8e+02 Score=25.23 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 013164 205 FQLIAHQEERDAI 217 (448)
Q Consensus 205 ~ql~~~~~e~~sl 217 (448)
.++..+..+...+
T Consensus 88 ~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 88 AELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 408
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.18 E-value=3.3e+02 Score=31.82 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
.|.++++.+.++.+++..+-+.+....+.|-.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444444444444333333333333333333
No 409
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.17 E-value=3.6e+02 Score=28.75 Aligned_cols=14 Identities=36% Similarity=0.394 Sum_probs=7.2
Q ss_pred cchHHHHHHHHHhh
Q 013164 78 HSTITVLKRAFEIA 91 (448)
Q Consensus 78 s~~i~~l~~lFdIl 91 (448)
-+.|..++=.|.|-
T Consensus 46 f~~iss~gwff~i~ 59 (401)
T PF06785_consen 46 FSIISSLGWFFAIG 59 (401)
T ss_pred hHHHHHhHHHHHhh
Confidence 34455555555553
No 410
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.11 E-value=2e+02 Score=25.74 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
.+..+.-.+.+..+...|.-.+.++.-.. +-...|.+.-+....+...+++.+.++.+++..+|...+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666665555543211 1112233334444444455555555555555554444443
No 411
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.00 E-value=4e+02 Score=29.33 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTR 122 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~ 122 (448)
+.++.....++..+.+
T Consensus 250 ~~~i~~a~~~i~~L~~ 265 (582)
T PF09731_consen 250 NSLIAHAKERIDALQK 265 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 412
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.80 E-value=1e+02 Score=24.00 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
|+.++..|+.+...+..++..|+.+...|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 413
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=48.73 E-value=1.7e+02 Score=25.01 Aligned_cols=77 Identities=26% Similarity=0.387 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc--------------cccCC-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEA--------------RDVLS-EADFLKEK-LKIEEEERKLEAAIEETE 169 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~f--L~~L~~~~--------------~~~~~-ee~l~~e~-~~Le~EE~~L~~eL~~lE 169 (448)
.|-+...++++..-+|++-...+ |++|-.+. .+.++ ++.+..-+ ..++.+...|...|.+++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888776643 33442111 01122 33444433 335777888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 170 KQNAEVNAELKELEL 184 (448)
Q Consensus 170 ~e~~~l~~el~~le~ 184 (448)
++...+.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999988888877654
No 414
>smart00338 BRLZ basic region leucin zipper.
Probab=48.73 E-value=74 Score=24.78 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
|+.++..|+.+..+|..++..|+.+...|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 415
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=48.42 E-value=2e+02 Score=25.67 Aligned_cols=90 Identities=10% Similarity=0.105 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~---~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
...+++.+...++.|..-+..... ..++...+. .=+..|..........+..++.+.+.....+.+...+.+.+
T Consensus 35 ~~~~L~~L~~y~~~y~~~~~~~~~---~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 35 AEQQLKMLEDYRLEYRQQLNDRGS---AGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555443332111 123433332 22455677777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHhHHHH
Q 013164 190 KELEERYWQEFNNFQF 205 (448)
Q Consensus 190 ~~eE~~~w~e~n~~q~ 205 (448)
+.+-++...++...+.
T Consensus 112 EkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 112 ETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777655543
No 416
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.42 E-value=3.4e+02 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 106 MRVLSDKLDKEVDDVTRDIEAYEACLQR 133 (448)
Q Consensus 106 ~d~Lle~Ld~qle~~~~E~~~Y~~fL~~ 133 (448)
....++.++++++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446667777777777777777765543
No 417
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.16 E-value=3.4e+02 Score=28.19 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAE 174 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~ 174 (448)
+|.++.+.|.+|+++++.
T Consensus 132 ~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 132 EERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 418
>PRK11281 hypothetical protein; Provisional
Probab=47.61 E-value=1.5e+02 Score=36.05 Aligned_cols=16 Identities=31% Similarity=0.053 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 013164 267 WDEINAAWGQACLLLH 282 (448)
Q Consensus 267 W~EINAAwGQ~~LLL~ 282 (448)
-.++|.++++-..=+.
T Consensus 283 ~~~~N~~Ls~~L~~~t 298 (1113)
T PRK11281 283 ELEINLQLSQRLLKAT 298 (1113)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4477999988765443
No 419
>PF14992 TMCO5: TMCO5 family
Probab=47.49 E-value=3.3e+02 Score=28.08 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD--AISSKIEVSQ 225 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~--sl~~q~~~~~ 225 (448)
..++.+..+++.++.++.+++.......+.++.--.....++-.+...+++++ -|+.++..++
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKYQ 180 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555444443433333333333344444444444443 3334444444
No 420
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=46.92 E-value=1.4e+02 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=4.6
Q ss_pred ecCCeeeeccccCCC
Q 013164 245 HDGEFGTINNFRLGR 259 (448)
Q Consensus 245 hdG~fGTINGlRLGr 259 (448)
.+-+||+| |||.+.
T Consensus 72 ~~l~~G~v-~~R~~~ 85 (149)
T PF07352_consen 72 LKLPFGTV-GFRKST 85 (149)
T ss_dssp EE-SS-EE-------
T ss_pred EEcCCeeE-EEEecC
Confidence 46788998 899986
No 421
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.56 E-value=5.1e+02 Score=31.52 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 013164 100 PLCLECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 134 (448)
Q Consensus 100 PLC~eC~d~Lle~Ld~qle~~~~E~~-----~Y~~fL~~L 134 (448)
|--. |...-++..+.+...++.... .|..|..++
T Consensus 725 p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 725 PEIS-EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444 334455556666666555443 366666654
No 422
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=46.47 E-value=1.3e+02 Score=31.82 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 120 VTRDIEAYEACLQRL 134 (448)
Q Consensus 120 ~~~E~~~Y~~fL~~L 134 (448)
..+..+.|+.+++.+
T Consensus 213 ~~r~~~Yf~~l~~~f 227 (406)
T PF02388_consen 213 SIRSLEYFENLYDAF 227 (406)
T ss_dssp ----HHHHHHHHHHC
T ss_pred cccCHHHHHHHHHhc
Confidence 445667788888877
No 423
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=46.45 E-value=1.1e+02 Score=25.99 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013164 114 DKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 114 d~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
-+|++.+++....|..-|+.++.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~ 26 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVES 26 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 45777777777777777776654
No 424
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=46.10 E-value=3e+02 Score=28.35 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 206 QLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 206 ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
++...+.+...++++++.++.+++.+.
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 344445555666777777777766544
No 425
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=46.04 E-value=2.8e+02 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888777776654
No 426
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=45.76 E-value=2.9e+02 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013164 116 EVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 116 qle~~~~E~~~Y~~fL~~L~ 135 (448)
+++...+=++.|++-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666554
No 427
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.63 E-value=1.9e+02 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS 143 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ 143 (448)
.+.+..++..+..+.+.-+.-+..+.++.-+.++
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls 47 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLS 47 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 4455566666666666656556655555433333
No 428
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=45.57 E-value=2.9e+02 Score=27.78 Aligned_cols=6 Identities=17% Similarity=0.003 Sum_probs=2.3
Q ss_pred HHHHHH
Q 013164 272 AAWGQA 277 (448)
Q Consensus 272 AAwGQ~ 277 (448)
+.|-+.
T Consensus 261 ~~~~~~ 266 (301)
T PF14362_consen 261 ALLASL 266 (301)
T ss_pred HHHHHH
Confidence 333333
No 429
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=45.29 E-value=2.2e+02 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
...+++..|.......-++|.+++.+.+
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k 77 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK 77 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554443
No 430
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.26 E-value=2.1e+02 Score=27.76 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
+|...|..++..|+.....+.++....+.|++.|..- +-+.++|++..+|.....-....|..++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~------------Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA------------LTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cChHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.99 E-value=53 Score=25.90 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
..+.+++.+++++.+++.++..+|+.+.+.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555554
No 432
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.84 E-value=4.5e+02 Score=28.76 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el 179 (448)
+.+++|++-.+|.+.|.++-.....+..+-
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e~ 203 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAEY 203 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444433
No 433
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=44.62 E-value=50 Score=36.78 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQ 206 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~-~le~e~~~l~~eE~~~w~e~n~~q~q 206 (448)
|-++++.+.....+|+++|+ .+-.-..+-+..|++.|++|..+...
T Consensus 520 Lharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d 566 (604)
T KOG4796|consen 520 LHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD 566 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC
Confidence 33444444444444555554 33333334578888999999988843
No 434
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=44.61 E-value=1.8e+02 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013164 170 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 209 (448)
Q Consensus 170 ~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~ 209 (448)
.+.......+...+.....+.++..+|+++.++-+.+...
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~ 53 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDR 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333344455556666667788888888888777665533
No 435
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=44.38 E-value=3.6e+02 Score=30.06 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
-|+..|-+.=..|+..+.+.-+.|..-.+++
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~ 47 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRT 47 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555555555554444443
No 436
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=44.36 E-value=52 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 198 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~ 198 (448)
++|.++-+.+.+|+++|..+|.++- +.|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy---~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIY---DKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 4566666677777777777776543 33444554
No 437
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.29 E-value=2.3e+02 Score=25.15 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 215 DAISSKIEVSQAHLE 229 (448)
Q Consensus 215 ~sl~~q~~~~~~~Ld 229 (448)
..+..++.-.+.+|.
T Consensus 95 ~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 95 KKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 438
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.18 E-value=7.5 Score=44.07 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 207 LIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
+..++++..++....+....+.+.|+
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444434333333333444444
No 439
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=43.63 E-value=3.4e+02 Score=27.00 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
++.|..+++.+.+.++.|..-++++..... ....++..-..+.++....+......+..++..+..++.++..+...+
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDS--SLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------------------HHHHHHHHHHHhHHHHHHH
Q 013164 190 ---------------------------KELEERYWQEFNNFQFQLI 208 (448)
Q Consensus 190 ---------------------------~~eE~~~w~e~n~~q~ql~ 208 (448)
-..|++|++.++.+-.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF 193 (256)
T PF14932_consen 148 ASELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQF 193 (256)
T ss_pred HHHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhc
No 440
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.61 E-value=1.6e+02 Score=23.47 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..|.+++....+++.-|..++.|...+.
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566666666666666666655553
No 441
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=43.44 E-value=5.8e+02 Score=29.59 Aligned_cols=73 Identities=18% Similarity=0.334 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 236 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv 236 (448)
.++...+...++.+.+..|+.+.......=++.-..+++....+.-+.-.+..++..+......|.++++-+.
T Consensus 553 ~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 553 SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444444455555555555555444433333444555555555555555555555666666666666666554
No 442
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=43.09 E-value=5.6e+02 Score=29.29 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARD-----VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~-----~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
..++.+++.+++-++.-+..++....+... .....-...|..-+-.+.++..+.+..||.+.+.+..++......
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 186 SK------------RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 186 ~~------------~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
.+ .|+..|...-+..++.+.-...+.+++....+++....+++...+..
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~ 332 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISE 332 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.03 E-value=1.4e+02 Score=31.52 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=9.6
Q ss_pred ccchHHHHHHHHHH
Q 013164 327 TRYDKAMTLFLSCL 340 (448)
Q Consensus 327 ~kFD~AM~afL~cl 340 (448)
.-||.||...|.-|
T Consensus 242 ~~~~lai~H~lSHl 255 (420)
T PF07407_consen 242 DINDLAIMHLLSHL 255 (420)
T ss_pred CcchHHHHHHHhhc
Confidence 46788887777643
No 444
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=42.92 E-value=85 Score=30.68 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 209 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~ 209 (448)
......++++...++.++..++.+ ++..|++||+.|..++..+..
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~r---l~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEER---LESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666643 677778899988887765543
No 445
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=42.87 E-value=1.9e+02 Score=23.75 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
..|++++..+.....+...|.+++.....+++.|.+
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777666666543
No 446
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.65 E-value=5e+02 Score=28.55 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhcc
Q 013164 165 IEETEKQNAEVNAELKELEL----KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL-----LKRTN 235 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le~----e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~-----L~ktN 235 (448)
+..|..|.++++..+...+. +..++-++|.-.-.+.-.+|+.|..-.+.|.+|..++.-....|+- +...-
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~ 334 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFV 334 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 33445555555555555443 3333344444333444445666666666666666555544433332 22223
Q ss_pred cCCCceeeee
Q 013164 236 VLNDAFPIWH 245 (448)
Q Consensus 236 v~nd~F~I~h 245 (448)
.+.+.|.|-.
T Consensus 335 ~~g~s~~Va~ 344 (552)
T KOG2129|consen 335 DFGDSVEVAL 344 (552)
T ss_pred ccCCceeeec
Confidence 3445555543
No 447
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=42.53 E-value=4e+02 Score=27.45 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
...+..++..-+.+++.++++|.
T Consensus 179 F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445556666677777776664
No 448
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.45 E-value=1.5e+02 Score=23.36 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
++.++..+++++.-+...+.++++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666555543
No 449
>PLN02678 seryl-tRNA synthetase
Probab=42.42 E-value=1.9e+02 Score=31.46 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 013164 332 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 368 (448)
Q Consensus 332 AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 368 (448)
+...|=.++.-..+++. .+.|||++
T Consensus 301 s~~~~e~~l~~~~~i~~------------~L~lpyrv 325 (448)
T PLN02678 301 SWEMHEEMLKNSEDFYQ------------SLGIPYQV 325 (448)
T ss_pred HHHHHHHHHHHHHHHHH------------HcCCCeEE
Confidence 65555555555555543 26777777
No 450
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=42.38 E-value=8.3 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
++-+...++.|+..|..+++..
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4455666677777777776653
No 451
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=41.88 E-value=2.8e+02 Score=30.12 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAA--------IEETEKQN-AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~e--------L~~lE~e~-~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
..|+++|.+|.+.|.+| |+.+.+.. +++..||.+-+.=-...+-+-++|..++...+++|..+-++..+-.
T Consensus 362 qRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKC 441 (593)
T KOG4807|consen 362 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKC 441 (593)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 013164 219 SKIEVSQAHLE 229 (448)
Q Consensus 219 ~q~~~~~~~Ld 229 (448)
-...+.-..++
T Consensus 442 LEnahLaqalE 452 (593)
T KOG4807|consen 442 LENAHLAQALE 452 (593)
T ss_pred HHHHHHHHHHH
No 452
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=41.59 E-value=81 Score=33.25 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS--- 186 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~e--e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~--- 186 (448)
+|..+.+..++|.+.+..-++...........+ +...+++..+.....++..+++.+.+...+...++..+..+.
T Consensus 59 qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~ 138 (370)
T PF02994_consen 59 QLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENI 138 (370)
T ss_dssp -----------------------------------------------------------H--------------------
T ss_pred HHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Q ss_pred -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccc
Q 013164 187 -----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL----KRTNV 236 (448)
Q Consensus 187 -----~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L----~ktNv 236 (448)
.++++.| ...++++-.+.++......+..++......|+-| ++.||
T Consensus 139 ~~~l~~Ri~e~E----eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 139 DESLNSRIDELE----ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
No 453
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.55 E-value=6.2e+02 Score=29.36 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEA 126 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~ 126 (448)
+-.+-.-+.|+++++....++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~ 137 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQA 137 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666655555
No 454
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=41.46 E-value=3.3e+02 Score=27.49 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013164 142 LSEADFLKEKLKIEEEERKLEAAIEETE-----KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 142 ~~ee~l~~e~~~Le~EE~~L~~eL~~lE-----~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
++..++..++...+.+...+..++..++ .+.+....++...+.+....+.. +..+..+..+-.--+.+.+.
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~ak~~l~~a~~~----~~r~~~L~~~g~vs~~~~~~ 149 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYRDEEIAQARAAVKQAQAAYDYAQNF----YNRQQGLWKSRTISANDLEN 149 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013164 217 ISSKIEVSQAHLELLKR 233 (448)
Q Consensus 217 l~~q~~~~~~~Ld~L~k 233 (448)
....|..++.+++.++.
T Consensus 150 ~~~~~~~a~~~~~~a~~ 166 (331)
T PRK03598 150 ARSSRDQAQATLKSAQD 166 (331)
T ss_pred HHHHHHHHHHHHHHHHH
No 455
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.39 E-value=4.8e+02 Score=28.03 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=20.0
Q ss_pred ccchHHHHHHHHHhhcCCcccC-CcchHH
Q 013164 77 FHSTITVLKRAFEIATSQTQVE-QPLCLE 104 (448)
Q Consensus 77 ls~~i~~l~~lFdIlS~~s~iD-hPLC~e 104 (448)
++.-+.+|.|=|.||-.+.+-+ .|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 5566788999999997754433 377766
No 456
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.25 E-value=3.7e+02 Score=29.35 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
..++.+|..+-+++..++++|..++.++.++|...-.+... .-...-.+.+.+.-++.....+.+.++++++...
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l-- 102 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL-- 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence 45566788888889999999999998888888733221111 1123445555666666555555555555443332
Q ss_pred HHHHhhcccCCCceeeeecC
Q 013164 228 LELLKRTNVLNDAFPIWHDG 247 (448)
Q Consensus 228 Ld~L~ktNv~nd~F~I~hdG 247 (448)
|.--|+-.+.=+++-|+
T Consensus 103 ---l~ipNi~~~~VPvg~de 119 (429)
T COG0172 103 ---LTIPNIPHESVPVGKDE 119 (429)
T ss_pred ---HhCCCCCccccCcCCCc
Confidence 44567777777766554
No 457
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=41.09 E-value=2.8e+02 Score=25.27 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
+.+.+..++.|+++++-+.+.+..+.
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 458
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.98 E-value=3.9e+02 Score=26.90 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 013164 174 EVNAELKELELKS 186 (448)
Q Consensus 174 ~l~~el~~le~e~ 186 (448)
.+++++.+.+.+.
T Consensus 90 ~ieqeik~~q~el 102 (246)
T KOG4657|consen 90 GIEQEIKATQSEL 102 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 459
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.95 E-value=2.1e+02 Score=30.72 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 013164 330 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 369 (448)
Q Consensus 330 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 369 (448)
+.|...|-.+++-..++.+ .+.|||++-
T Consensus 292 e~s~~~~~~~l~~~~~i~~------------~Lglpyr~v 319 (425)
T PRK05431 292 EDSYAELEELTANAEEILQ------------KLELPYRVV 319 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HcCCcEEEE
Confidence 7888888877777766664 378999883
No 460
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=40.85 E-value=4.6e+02 Score=27.70 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 206 QLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 206 ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
+...+.+-...|..++..+...+..|.++
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666665543
No 461
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.72 E-value=5.4e+02 Score=28.45 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAEL----KELELKSKRFKELEERYWQEFNNFQFQLIAH 210 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el----~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~ 210 (448)
++.+...+..++..++.+..++...+ +..+++...|++.++++-.+|.++..+..+.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~ 125 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEH 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443433333332 3334455556666677777777776665543
No 462
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=40.72 E-value=3.7e+02 Score=26.59 Aligned_cols=130 Identities=15% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Q 013164 81 ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERK 160 (448)
Q Consensus 81 i~~l~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~ 160 (448)
|..++++++++.++- +.+++.++.-...++..+..-+.-|.+++... ..+......++.+-.+
T Consensus 1 M~i~~r~~~~~~a~~-----------~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~------A~~~a~~k~~e~~~~~ 63 (225)
T COG1842 1 MGIFSRLKDLVKANI-----------NELLDKAEDPEKMLEQAIRDMESELAKARQAL------AQAIARQKQLERKLEE 63 (225)
T ss_pred CchHHHHHHHHHHHH-----------HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETE-------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 221 (448)
Q Consensus 161 L~~eL~~lE-------------------~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~ 221 (448)
+....+.++ .+...++..+..++.+...+.+...+.=+....++.++.++......+.++.
T Consensus 64 ~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 64 AQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013164 222 EVSQAH 227 (448)
Q Consensus 222 ~~~~~~ 227 (448)
..+..+
T Consensus 144 ~~akA~ 149 (225)
T COG1842 144 AAAKAQ 149 (225)
T ss_pred HHHHHH
No 463
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=40.72 E-value=2.9e+02 Score=29.20 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 143 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 143 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
+..+++..+.+.|......++++..++.+.....+.+...+.
T Consensus 85 D~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a 126 (352)
T COG1566 85 DPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA 126 (352)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544444444
No 464
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.37 E-value=2.3e+02 Score=24.03 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
++.++..|...+.+|+++|...+.+.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 33444444444444444444444333
No 465
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=40.32 E-value=2.2e+02 Score=30.51 Aligned_cols=91 Identities=23% Similarity=0.331 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
.+.+.++++|...+...|+..++.++.+++.+...++-.+--+++-.+.-...+.++. .++.+..++......
T Consensus 199 ~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~-------~l~~i~~qL~~L~~~ 271 (379)
T PF04518_consen 199 FMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKD-------NLNAISNQLSLLQSL 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4556778888888888888888888877777766654322112222233333333333 334455555555555
Q ss_pred HHHHhh-----cccCCCceeeee
Q 013164 228 LELLKR-----TNVLNDAFPIWH 245 (448)
Q Consensus 228 Ld~L~k-----tNv~nd~F~I~h 245 (448)
|.-|.= -+=+..+|+|--
T Consensus 272 L~~L~~~~~~~~~~~~~~F~i~g 294 (379)
T PF04518_consen 272 LAPLSIQGVSDPDEVDGAFKITG 294 (379)
T ss_pred hccceeecCCCCCCcCCceEEEe
Confidence 554432 344667888854
No 466
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=3.1e+02 Score=31.35 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-cCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEA-RD-VLSEADFLKEKLKIEEE-------ERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~-~~-~~~ee~l~~e~~~Le~E-------E~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
..|.++|+++.+-|....--|+++.... +. .....+ ...+..||+| -.+|..|++.+++..++++.....
T Consensus 462 ~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d-~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~ev 540 (852)
T KOG4787|consen 462 ISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSD-ELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEV 540 (852)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHH
Confidence 3467777777777777666666654322 11 011000 1111222222 234566666666666666555555
Q ss_pred H
Q 013164 182 L 182 (448)
Q Consensus 182 l 182 (448)
|
T Consensus 541 L 541 (852)
T KOG4787|consen 541 L 541 (852)
T ss_pred H
Confidence 4
No 467
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=40.17 E-value=50 Score=30.72 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=0.0
Q ss_pred Cceeeeec
Q 013164 239 DAFPIWHD 246 (448)
Q Consensus 239 d~F~I~hd 246 (448)
-.+.+|+.
T Consensus 113 ~~l~~~~r 120 (161)
T PF04420_consen 113 FVLRFWYR 120 (161)
T ss_dssp --------
T ss_pred hhhheeec
Confidence 34444443
No 468
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=39.96 E-value=4.6e+02 Score=27.40 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 154 Le~EE~~L~~eL~~-lE~e~~~l~~el~~le~e~~~l 189 (448)
++.+|++|.+.++. -+++.+++..+|..|+.-+.++
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35555555555542 3445555555555555444443
No 469
>PRK10722 hypothetical protein; Provisional
Probab=39.81 E-value=1.1e+02 Score=30.82 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFKELEE 194 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~ 194 (448)
+.+|+.+-++..++..+|.....++++|.+.|+
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666677777777667767766664
No 470
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.73 E-value=2.9e+02 Score=26.53 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 174 EVNAELKELELKSKRFKEL 192 (448)
Q Consensus 174 ~l~~el~~le~e~~~l~~e 192 (448)
+++.||++++.+...++..
T Consensus 124 eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433
No 471
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.58 E-value=5.6e+02 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=12.1
Q ss_pred CccceeeEEecCCCCchhhHHHHHH
Q 013164 371 DKVENYSITQSFNKQENWTKALKYT 395 (448)
Q Consensus 371 dkI~g~SI~l~~n~~e~WTkAlK~l 395 (448)
+.+...+|++..|=+..-.+|+|-.
T Consensus 497 G~~~~p~l~i~SdLd~ql~~a~~~~ 521 (555)
T TIGR03545 497 GILEDPNLKINSNLDKLLAKAFKKE 521 (555)
T ss_pred cccCCCceeeecCHHHHHHHHHHHH
Confidence 3344455555444455555555543
No 472
>PF14282 FlxA: FlxA-like protein
Probab=39.55 E-value=2.5e+02 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRD 123 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E 123 (448)
+..++.|++++..+.++
T Consensus 18 ~~~I~~L~~Qi~~Lq~q 34 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQ 34 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 473
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.24 E-value=3.6e+02 Score=28.41 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQ 171 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e 171 (448)
++.++-++|++.-+...+.++++.+-
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~l 33 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKL 33 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 474
>PF13166 AAA_13: AAA domain
Probab=39.17 E-value=6e+02 Score=28.49 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=9.0
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 013164 263 IPVEWDEINAAWGQACLLLH 282 (448)
Q Consensus 263 ~~V~W~EINAAwGQ~~LLL~ 282 (448)
.||+==--|.-.+-+-+|-.
T Consensus 535 DPISSLD~~~~~~v~~~l~~ 554 (712)
T PF13166_consen 535 DPISSLDHNRRFGVASRLKE 554 (712)
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 45544344444444444433
No 475
>PRK14160 heat shock protein GrpE; Provisional
Probab=38.96 E-value=3.9e+02 Score=26.32 Aligned_cols=21 Identities=5% Similarity=-0.029 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 013164 270 INAAWGQACLLLHTMCQYFRP 290 (448)
Q Consensus 270 INAAwGQ~~LLL~tla~~l~~ 290 (448)
|=.++-.+.--|..+-.++|+
T Consensus 137 l~~Gv~mi~kql~~vL~k~GV 157 (211)
T PRK14160 137 LKKGIEMTVKQFKTSLEKLGV 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
Confidence 445666665555555556654
No 476
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.75 E-value=1.6e+02 Score=29.64 Aligned_cols=38 Identities=8% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
+-.+.++.++...+||.|..+..+++.+|+.|.+.|..
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777777666643
No 477
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.62 E-value=1.6e+02 Score=31.15 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
-.|+.|-.+|.+|.++|..+.++|+++..
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455555555555555555555544444
No 478
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.50 E-value=2.7e+02 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
++.|..++..+......|...++-|+
T Consensus 15 i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 15 VESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655543
No 479
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.48 E-value=3.6e+02 Score=25.79 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
+.+.+....++.|-..-..+|..+|+...+-+. .|+.+...|+..|+..=.....+..+...+......+.......
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~---~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREE---QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcc
Q 013164 225 QAHLELLKRTN 235 (448)
Q Consensus 225 ~~~Ld~L~ktN 235 (448)
...|++.....
T Consensus 137 ~~~Le~iAglT 147 (201)
T PF12072_consen 137 QQELEEIAGLT 147 (201)
T ss_pred HHHHHHHhCCC
No 480
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=38.31 E-value=3.2e+02 Score=28.67 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=7.5
Q ss_pred ecCCeeeeccccCCC
Q 013164 245 HDGEFGTINNFRLGR 259 (448)
Q Consensus 245 hdG~fGTINGlRLGr 259 (448)
.||.+..++ ++.|.
T Consensus 222 ~dG~V~~~~-v~~G~ 235 (390)
T PRK15136 222 MTGYVSRRS-VQVGA 235 (390)
T ss_pred CCeEEEEEe-cCCCC
Confidence 466665553 45554
No 481
>PRK14127 cell division protein GpsB; Provisional
Probab=38.30 E-value=1.2e+02 Score=26.86 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK-----------------SKRFKELEERYW 197 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e-----------------~~~l~~eE~~~w 197 (448)
+++.+..+.+..|-.+|..++..|+.+.+++..++...+.. +++|..+|+..+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
No 482
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=37.99 E-value=9e+02 Score=30.21 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
...-+......+...+..|...|+++.
T Consensus 701 f~~ll~~k~~~~~~~~~r~~~gl~kl~ 727 (1395)
T KOG3595|consen 701 FKKLLKEKRSEVRLRKLRLELGLDKLK 727 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 344445555555555666666666554
No 483
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.94 E-value=4.1e+02 Score=26.25 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
+.|...+..+...+..-..-+..+.. ....++..++...+.+.+.=.++++.. .+...+...+.|+.+.+.=..+.+
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~-~~~~~~~~~l~~~l~ea~~mL~emr~r--~f~~~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNE-NGDQLPSEDLQRALAEAQRMLEEMRKR--DFTPQRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-ccCCCCHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013164 191 ELEERYWQEFNNF----QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 238 (448)
Q Consensus 191 ~eE~~~w~e~n~~----q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~n 238 (448)
..-...|.+-..+ ...|.+|..++..+...++.|..+...-.+.|..|
T Consensus 167 ~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n 218 (264)
T PF06008_consen 167 KWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRAN 218 (264)
T ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=37.92 E-value=58 Score=25.86 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
+++.|..||+...+.+++..+.+.+.+..++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 485
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.90 E-value=4.3e+02 Score=26.52 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
....+......+++=++.|..-.+..+.-.....+..++.+-..++..-.++....|+.+......-..++...=...++
T Consensus 121 ~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~ 200 (269)
T cd07673 121 AVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCCh
Q 013164 189 FKELEERYWQEFNNFQFQLIAHQ-EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 267 (448)
Q Consensus 189 l~~eE~~~w~e~n~~q~ql~~~~-~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W 267 (448)
+++.=-.|.++.=.--.+..... -..+.+...+..+..+++.-+-.+.| |+...-|--|..||+.
T Consensus 201 ~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~Di~~f--------------i~~~gTG~~~P~~~~f 266 (269)
T cd07673 201 IEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVESLIQKF--------------AESKGTGKERPGPIEF 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHHHHHHH--------------HHhcCCCCCCCCCCCC
Q ss_pred HH
Q 013164 268 DE 269 (448)
Q Consensus 268 ~E 269 (448)
.+
T Consensus 267 E~ 268 (269)
T cd07673 267 EE 268 (269)
T ss_pred CC
No 486
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.79 E-value=1.7e+02 Score=31.36 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQ----NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 207 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e----~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql 207 (448)
++..+++.|..+.+.+-+++..+.+. .+++.++.+++..++++++++.+....+++..-..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 487
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.58 E-value=74 Score=26.87 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.+.++|.++|+.++.+.+.+..++..++.+.+-|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 488
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.49 E-value=5.6e+02 Score=27.65 Aligned_cols=188 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred cccccCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCceEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchHHH
Q 013164 5 FVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITV 83 (448)
Q Consensus 5 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~esfv~l~~s~~~~d~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~ 83 (448)
|..|-+.+- -+-.+++...+...+.....+.....-+......--...|+..+.+.+++..+.++..+...+-+..
T Consensus 127 fA~likNkFGSADNI~sl~~~~~~~~~~~~~~~l~~s~~~~~~~ky~S~d~SecSS~tS~S~~~~s~~~~~~~~~~~--- 203 (395)
T PF10267_consen 127 FAHLIKNKFGSADNISSLKDSLDEPNPDSGPRSLSGSSTLTASPKYGSEDSSECSSVTSGSIDANSNSSNSGGSSQG--- 203 (395)
T ss_pred HHhcccCCCCCCCccccccccccccCCCCCCcCCCCCcccccccccCcccccccccCCCCCCCCCCCCCCCCccccc---
Q ss_pred HHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--HHHHHHHHHHHHHHHHHH
Q 013164 84 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--EADFLKEKLKIEEEERKL 161 (448)
Q Consensus 84 l~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~--ee~l~~e~~~Le~EE~~L 161 (448)
+.=..=....+..+..++.+..+....++.-+++|+.+-..... .+.+.+|.-+.+.-|+.+
T Consensus 204 ----------------~~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 204 ----------------SSVSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQL 267 (395)
T ss_pred ----------------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l-~~eE~~~w~e~n~~q~ql~~~~ 211 (448)
-.-++--..|...|.++|...+++.+=+ .+.=+..|...-.+|-.+..++
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 489
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=37.39 E-value=4.1e+02 Score=26.11 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
|+.-|+...++...++..=..|.-.|..+++++..+....+..-...-..++.-..++...++|+....+..+.....+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Q ss_pred HHhh
Q 013164 230 LLKR 233 (448)
Q Consensus 230 ~L~k 233 (448)
.|..
T Consensus 91 ~le~ 94 (202)
T PF06818_consen 91 QLEA 94 (202)
T ss_pred hhHH
No 490
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.37 E-value=2.4e+02 Score=23.47 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL-ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 223 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l-e~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~ 223 (448)
..+......++.....+...+..++.+.+.+..++... ..=...|++.|+....+.......... .+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~------~l~~q~~~ 83 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLK------VLEQQLES 83 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q ss_pred HHHHHHHHhhc
Q 013164 224 SQAHLELLKRT 234 (448)
Q Consensus 224 ~~~~Ld~L~kt 234 (448)
...+++.|+.+
T Consensus 84 l~~~l~~l~~~ 94 (127)
T smart00502 84 LTQKQEKLSHA 94 (127)
T ss_pred HHHHHHHHHHH
No 491
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=37.26 E-value=77 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.++.+++.+++++.++++++-.+|+.+...|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 492
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=37.17 E-value=2.6e+02 Score=28.04 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
....+..++.+......++..++......+....+.=+..-.++.++...+.+....++++..++.++++.++
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~ 125 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRS 125 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.04 E-value=5e+02 Score=26.95 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
+..|..+..+++...+.+.-..++|+.|-..+.=+..-|++.=+..=..+..+++++.+...++..++..+...+.+++-
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 013164 231 LK 232 (448)
Q Consensus 231 L~ 232 (448)
|+
T Consensus 159 Lr 160 (302)
T PF09738_consen 159 LR 160 (302)
T ss_pred HH
No 494
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.03 E-value=6.4e+02 Score=28.23 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
+.+-..+..+++++..+.+.+..-......+ .+.+.+.+...+++.+.+..+|+++......++. +|+...
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~E------c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr 482 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAE------CRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 187 KRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 187 ~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
...+++=.-.=..+-.+.-+|..-.|+.+.|+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 495
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=36.97 E-value=5.8e+02 Score=28.82 Aligned_cols=88 Identities=25% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 013164 103 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ-NAEVNAELKE 181 (448)
Q Consensus 103 ~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e-~~~l~~el~~ 181 (448)
.+=...+++.+++++....++.+.-..--.+.+.. .+.....|.++.+.+|..-.++.++.+.+ .+.++.+-.+
T Consensus 185 ~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~-----e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek 259 (591)
T KOG2412|consen 185 LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERS-----EEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEK 259 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 013164 182 LELKSKRFKELEER 195 (448)
Q Consensus 182 le~e~~~l~~eE~~ 195 (448)
.+.|.++.++.+..
T Consensus 260 qeee~ke~e~~~~k 273 (591)
T KOG2412|consen 260 QEEERKEAEEQAEK 273 (591)
T ss_pred HHHHHHHHHHHHHH
No 496
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.94 E-value=70 Score=28.54 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELL 231 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~--~~~e~~sl~~q----~~~~~~~Ld~L 231 (448)
.+++-..+..+|.+.-.+-+|+..+++....+-++....--+-..+...|.+ +.+.--.-+.. ...-..+|.+|
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l 82 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH
Q ss_pred hhcccCCCceeeeecCCee
Q 013164 232 KRTNVLNDAFPIWHDGEFG 250 (448)
Q Consensus 232 ~ktNv~nd~F~I~hdG~fG 250 (448)
|++-|||.+ -+||
T Consensus 83 -----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 -----YQEGFHICN-VHYG 95 (114)
T ss_pred -----HhccchhHH-HHhc
No 497
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=36.91 E-value=4.6e+02 Score=26.52 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRL--EGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L--~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
.+.+.++.+++.+..-+..|...+... ...........-+.+++-.+.+=+.=|+.-++++..=.+.++....+++..
T Consensus 9 ~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~~ 88 (281)
T PF12018_consen 9 ATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEAQ 88 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013164 186 SKRFKE 191 (448)
Q Consensus 186 ~~~l~~ 191 (448)
...|.+
T Consensus 89 l~~L~~ 94 (281)
T PF12018_consen 89 LEKLKE 94 (281)
T ss_pred HHHHHH
No 498
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.87 E-value=4.3e+02 Score=26.17 Aligned_cols=89 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-----KELEERYWQEFNNFQFQLIAHQEERDAISS 219 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l-----~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~ 219 (448)
.++..++.+++..-..+...-..+|++..++..+..+++.....- +.+=.+.....-.++.+...++.+...+..
T Consensus 34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~ 113 (225)
T COG1842 34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEE 113 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhh
Q 013164 220 KIEVSQAHLELLKR 233 (448)
Q Consensus 220 q~~~~~~~Ld~L~k 233 (448)
+......++..|..
T Consensus 114 ~~~~l~~~~~~Le~ 127 (225)
T COG1842 114 QVEKLKKQLAALEQ 127 (225)
T ss_pred HHHHHHHHHHHHHH
No 499
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.86 E-value=2.3e+02 Score=23.11 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
++.+.+..=.+..+.|..|-+.|.+........|+.|..+...++..=..+=...+.....+..+++....
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 500
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=36.81 E-value=4.7e+02 Score=26.58 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAA------IEETEKQNAEVNAELKEL 182 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~e------L~~lE~e~~~l~~el~~l 182 (448)
.|-+|-.+...++-+++....-|+.+..+ +.|++.+--..+..... +..+..|+.+.-.-...+
T Consensus 114 kI~~Ly~e~~~vk~~qkrLdq~L~~I~sq----------Q~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~ni 183 (254)
T KOG2196|consen 114 KISGLYNEVVKVKLDQKRLDQELEFILSQ----------QQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENI 183 (254)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013164 183 ELKSKRFKELEERYWQEFNNFQ-------------FQLIAHQEERDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 183 e~e~~~l~~eE~~~w~e~n~~q-------------~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
..+.+++.+-=.+.-...|.+. .-+..+.+.++.|....-....+++.++|.+
T Consensus 184 dsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 184 DSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Done!