Query 013164
Match_columns 448
No_of_seqs 153 out of 247
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 6.5E-80 2.2E-84 584.1 16.3 192 209-409 2-206 (210)
2 3vp7_A Vacuolar protein sortin 100.0 1.3E-73 4.5E-78 543.9 14.5 175 234-409 1-217 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.7 1.3E-16 4.3E-21 134.8 15.1 90 145-234 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.3 1.1E-07 3.6E-12 64.7 1.1 26 75-100 6-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.4 0.31 1.1E-05 44.1 18.4 20 113-132 4-23 (284)
6 2v71_A Nuclear distribution pr 96.3 0.53 1.8E-05 44.0 19.6 58 108-174 17-74 (189)
7 1c1g_A Tropomyosin; contractIl 96.0 0.84 2.9E-05 41.1 19.1 12 116-127 28-39 (284)
8 3q8t_A Beclin-1; autophagy, AT 95.6 0.61 2.1E-05 38.9 15.0 80 124-209 6-85 (96)
9 3oja_B Anopheles plasmodium-re 95.5 0.16 5.4E-06 53.2 14.1 19 154-172 514-532 (597)
10 2efr_A General control protein 95.2 1.7 5.9E-05 39.3 19.6 81 153-233 74-154 (155)
11 3na7_A HP0958; flagellar bioge 95.1 1.6 5.5E-05 41.7 18.7 11 298-308 222-232 (256)
12 3oja_B Anopheles plasmodium-re 95.1 0.33 1.1E-05 50.8 14.8 40 194-233 526-565 (597)
13 3na7_A HP0958; flagellar bioge 95.0 1.4 4.9E-05 42.1 17.9 6 249-254 193-198 (256)
14 2dfs_A Myosin-5A; myosin-V, in 94.8 0.19 6.6E-06 57.7 13.1 28 161-188 982-1009(1080)
15 3hnw_A Uncharacterized protein 94.3 0.59 2E-05 41.4 12.2 68 147-214 66-133 (138)
16 3o0z_A RHO-associated protein 94.2 3.3 0.00011 38.0 17.7 44 175-218 95-138 (168)
17 2v71_A Nuclear distribution pr 94.2 3.3 0.00011 38.6 17.5 111 119-232 7-125 (189)
18 3vkg_A Dynein heavy chain, cyt 94.1 1 3.4E-05 57.2 17.8 66 162-227 2013-2078(3245)
19 2efr_A General control protein 93.0 5 0.00017 36.3 17.5 32 198-229 98-129 (155)
20 3vkg_A Dynein heavy chain, cyt 90.8 3.5 0.00012 52.5 16.5 33 104-136 1899-1931(3245)
21 3s4r_A Vimentin; alpha-helix, 90.7 6.3 0.00021 32.5 13.1 73 159-233 19-91 (93)
22 3bas_A Myosin heavy chain, str 90.7 5.3 0.00018 32.5 12.4 68 150-231 15-82 (89)
23 2v4h_A NF-kappa-B essential mo 90.4 5.1 0.00017 34.3 12.3 25 207-231 85-109 (110)
24 1l8d_A DNA double-strand break 89.3 8.3 0.00028 31.9 13.1 32 198-229 71-102 (112)
25 3oja_A Leucine-rich immune mol 88.5 8.7 0.0003 39.2 15.0 33 175-207 433-465 (487)
26 3a7p_A Autophagy protein 16; c 88.2 3.4 0.00012 37.3 10.2 22 164-185 69-90 (152)
27 3a7p_A Autophagy protein 16; c 88.2 8.7 0.0003 34.7 12.8 63 149-218 68-130 (152)
28 1ic2_A Tropomyosin alpha chain 87.9 9 0.00031 30.5 12.7 36 198-233 41-76 (81)
29 3oja_A Leucine-rich immune mol 87.3 12 0.00041 38.2 15.2 22 113-134 358-379 (487)
30 3hnw_A Uncharacterized protein 86.8 8.3 0.00028 34.0 11.8 54 154-207 66-119 (138)
31 3bas_A Myosin heavy chain, str 86.4 12 0.00041 30.4 12.3 36 150-185 22-57 (89)
32 2v66_B Nuclear distribution pr 85.8 16 0.00054 31.3 13.5 85 111-200 6-90 (111)
33 1deq_A Fibrinogen (alpha chain 85.2 23 0.00078 36.3 15.5 41 221-268 181-222 (390)
34 3u1c_A Tropomyosin alpha-1 cha 83.4 18 0.00062 30.0 14.6 24 110-133 4-27 (101)
35 3nmd_A CGMP dependent protein 83.0 4 0.00014 32.5 7.1 44 146-189 23-66 (72)
36 2zqm_A Prefoldin beta subunit 83.0 8.5 0.00029 31.8 9.7 38 150-187 71-108 (117)
37 3u59_A Tropomyosin beta chain; 82.8 19 0.00065 29.7 14.6 18 111-128 5-22 (101)
38 3swk_A Vimentin; cytoskeleton, 81.9 19 0.00065 29.1 12.7 36 199-234 50-85 (86)
39 3ol1_A Vimentin; structural ge 81.3 24 0.00083 30.0 13.8 29 107-135 19-47 (119)
40 2jee_A YIIU; FTSZ, septum, coi 81.3 20 0.00069 29.1 10.8 18 164-181 28-45 (81)
41 3iox_A AGI/II, PA; alpha helix 80.9 28 0.00094 36.8 14.5 94 121-219 8-101 (497)
42 1ic2_A Tropomyosin alpha chain 80.6 17 0.00058 28.9 10.2 25 154-178 39-63 (81)
43 1l8d_A DNA double-strand break 79.7 24 0.00083 29.0 11.6 35 152-186 67-101 (112)
44 3mq9_A Bone marrow stromal ant 79.4 16 0.00054 37.1 12.1 25 163-187 443-467 (471)
45 3tnu_B Keratin, type II cytosk 78.7 31 0.001 29.6 12.1 33 150-182 37-69 (129)
46 3ghg_A Fibrinogen alpha chain; 78.5 22 0.00074 38.0 12.8 15 276-290 181-195 (562)
47 2ocy_A RAB guanine nucleotide 78.4 38 0.0013 30.5 16.2 31 203-233 113-143 (154)
48 3s9g_A Protein hexim1; cyclin 77.3 32 0.0011 29.0 11.7 61 126-191 18-79 (104)
49 3ghg_A Fibrinogen alpha chain; 77.3 55 0.0019 34.9 15.4 19 220-238 177-195 (562)
50 3tnu_A Keratin, type I cytoske 77.1 27 0.00093 30.0 11.2 23 157-179 46-68 (131)
51 1fxk_A Prefoldin; archaeal pro 76.5 13 0.00043 30.3 8.5 37 150-186 66-102 (107)
52 1ci6_A Transcription factor AT 75.6 9.9 0.00034 29.1 7.1 38 154-191 21-58 (63)
53 3iv1_A Tumor susceptibility ge 75.0 28 0.00096 28.0 9.8 31 159-189 42-72 (78)
54 3mq9_A Bone marrow stromal ant 75.0 49 0.0017 33.4 14.3 31 203-233 441-471 (471)
55 3opc_A Uncharacterized protein 74.5 42 0.0014 29.0 12.7 109 119-233 12-131 (154)
56 3uux_B Mitochondrial division 74.5 31 0.0011 33.3 11.6 73 153-225 153-225 (242)
57 2w83_C C-JUN-amino-terminal ki 73.8 28 0.00096 28.0 9.4 41 146-186 34-74 (77)
58 2i1j_A Moesin; FERM, coiled-co 73.0 1.4 4.9E-05 47.1 2.4 7 111-117 303-309 (575)
59 1wt6_A Myotonin-protein kinase 72.9 14 0.00049 30.0 7.6 41 149-189 31-71 (81)
60 3ajw_A Flagellar FLIJ protein; 72.5 44 0.0015 28.3 13.2 95 110-204 21-129 (150)
61 3cvf_A Homer-3, homer protein 72.2 32 0.0011 27.7 9.5 33 154-186 18-50 (79)
62 2ve7_A Kinetochore protein HEC 72.1 12 0.00042 37.0 8.6 25 162-186 184-208 (315)
63 2p22_A Suppressor protein STP2 71.9 47 0.0016 30.4 11.9 79 147-225 47-135 (174)
64 3viq_B Mating-type switching p 71.8 2.9 9.8E-05 34.4 3.3 10 195-204 45-54 (85)
65 1m1j_C Fibrinogen gamma chain; 70.4 60 0.002 33.4 13.6 24 111-134 44-67 (409)
66 3u1c_A Tropomyosin alpha-1 cha 70.2 45 0.0015 27.6 15.0 49 161-209 28-76 (101)
67 3cvf_A Homer-3, homer protein 70.1 41 0.0014 27.1 9.7 36 154-189 4-39 (79)
68 2lw1_A ABC transporter ATP-bin 69.9 30 0.001 27.8 9.1 24 149-172 22-45 (89)
69 2b5u_A Colicin E3; high resolu 69.8 60 0.0021 34.4 13.4 26 164-189 315-340 (551)
70 1hjb_A Ccaat/enhancer binding 67.1 27 0.00093 28.5 8.3 38 154-191 34-71 (87)
71 3mq7_A Bone marrow stromal ant 66.9 63 0.0021 27.9 13.2 13 120-132 19-31 (121)
72 3o0z_A RHO-associated protein 66.8 77 0.0026 28.9 18.5 68 111-184 9-76 (168)
73 2avr_X Adhesion A; antiparalle 66.5 34 0.0011 29.7 9.1 16 214-229 73-88 (119)
74 3u59_A Tropomyosin beta chain; 66.3 53 0.0018 26.9 15.3 49 161-209 28-76 (101)
75 3fpp_A Macrolide-specific effl 66.1 25 0.00084 33.8 9.3 53 205-259 121-173 (341)
76 2i1j_A Moesin; FERM, coiled-co 65.7 5 0.00017 42.9 4.6 17 119-135 332-348 (575)
77 2oto_A M protein; helical coil 65.6 70 0.0024 28.0 14.2 59 111-175 25-83 (155)
78 4dk0_A Putative MACA; alpha-ha 65.2 33 0.0011 33.2 10.1 30 204-233 121-150 (369)
79 3ol1_A Vimentin; structural ge 64.7 65 0.0022 27.3 16.1 9 127-135 18-26 (119)
80 2v4h_A NF-kappa-B essential mo 64.4 68 0.0023 27.4 12.7 22 214-235 85-106 (110)
81 1t2k_D Cyclic-AMP-dependent tr 62.6 23 0.00078 26.6 6.6 34 157-190 23-56 (61)
82 3cve_A Homer protein homolog 1 62.2 57 0.0019 25.8 11.1 38 151-188 9-46 (72)
83 2v66_B Nuclear distribution pr 61.5 76 0.0026 27.0 12.8 32 105-136 32-63 (111)
84 3hhm_B NISH2 P85alpha; PI3KCA, 60.8 80 0.0027 32.0 12.2 57 152-215 201-257 (373)
85 1wle_A Seryl-tRNA synthetase; 60.7 49 0.0017 34.8 11.0 36 149-184 70-105 (501)
86 2fup_A Hypothetical protein PA 60.6 39 0.0013 28.9 8.7 114 119-235 11-134 (157)
87 4etp_A Kinesin-like protein KA 60.5 25 0.00085 35.9 8.5 12 265-276 120-131 (403)
88 3ibp_A Chromosome partition pr 59.8 84 0.0029 31.2 11.7 73 109-182 25-102 (302)
89 1go4_E MAD1 (mitotic arrest de 59.0 42 0.0014 28.2 8.1 34 98-135 6-39 (100)
90 2e7s_A RAB guanine nucleotide 58.6 56 0.0019 28.8 9.2 17 167-183 64-80 (135)
91 3jsv_C NF-kappa-B essential mo 57.5 82 0.0028 26.2 10.0 24 209-232 65-88 (94)
92 3mq7_A Bone marrow stromal ant 57.5 94 0.0032 26.8 13.5 29 162-190 70-98 (121)
93 4etp_A Kinesin-like protein KA 57.3 36 0.0012 34.7 9.1 23 163-185 10-32 (403)
94 2dq0_A Seryl-tRNA synthetase; 57.1 44 0.0015 34.6 9.8 91 147-246 29-119 (455)
95 3ljm_A Coil Ser L9C; de novo d 57.0 19 0.00063 23.6 4.3 26 165-190 3-28 (31)
96 1f5n_A Interferon-induced guan 56.6 2.1E+02 0.0072 30.6 18.1 17 218-234 566-582 (592)
97 2wt7_A Proto-oncogene protein 56.4 33 0.0011 26.0 6.6 33 158-190 25-57 (63)
98 1gu4_A CAAT/enhancer binding p 56.2 40 0.0014 27.0 7.2 37 154-190 34-70 (78)
99 3u06_A Protein claret segregat 55.9 30 0.001 35.5 8.2 30 154-183 8-37 (412)
100 2eqb_B RAB guanine nucleotide 55.7 90 0.0031 26.1 11.5 13 169-181 46-58 (97)
101 3lss_A Seryl-tRNA synthetase; 55.0 81 0.0028 33.1 11.4 37 148-184 36-72 (484)
102 2l5g_B Putative uncharacterize 54.3 31 0.0011 24.7 5.5 29 161-189 7-35 (42)
103 3etw_A Adhesin A; antiparallel 53.6 76 0.0026 27.4 9.1 13 216-228 75-87 (119)
104 1fxk_C Protein (prefoldin); ar 53.4 1E+02 0.0035 26.0 10.4 82 108-189 15-128 (133)
105 2wt7_B Transcription factor MA 53.3 30 0.001 28.5 6.2 12 210-221 74-85 (90)
106 3qne_A Seryl-tRNA synthetase, 53.0 54 0.0018 34.5 9.7 88 148-246 32-121 (485)
107 4dzn_A Coiled-coil peptide CC- 52.9 30 0.001 23.0 4.8 22 168-189 7-28 (33)
108 2pms_C Pneumococcal surface pr 52.2 1.1E+02 0.0037 26.7 9.8 112 112-231 10-122 (125)
109 3nmd_A CGMP dependent protein 51.6 60 0.002 25.8 7.4 8 225-232 60-67 (72)
110 2yy0_A C-MYC-binding protein; 50.3 23 0.0008 26.3 4.7 28 152-179 22-49 (53)
111 3l4q_C Phosphatidylinositol 3- 49.9 1.5E+02 0.005 27.1 10.8 54 156-216 96-149 (170)
112 1go4_E MAD1 (mitotic arrest de 49.3 30 0.001 29.1 5.7 32 157-188 13-44 (100)
113 3qh9_A Liprin-beta-2; coiled-c 49.1 88 0.003 25.3 8.1 38 153-190 23-60 (81)
114 4e61_A Protein BIM1; EB1-like 48.8 1.2E+02 0.0042 25.6 11.1 44 162-205 10-53 (106)
115 3fpp_A Macrolide-specific effl 48.5 79 0.0027 30.2 9.5 25 204-228 127-151 (341)
116 3qne_A Seryl-tRNA synthetase, 48.4 89 0.0031 32.8 10.5 27 330-368 310-336 (485)
117 3qh9_A Liprin-beta-2; coiled-c 48.1 1.1E+02 0.0037 24.8 10.8 8 120-127 7-14 (81)
118 3ra3_B P2F; coiled coil domain 47.6 16 0.00053 23.5 2.8 22 168-189 5-26 (28)
119 2aze_B Transcription factor E2 47.1 29 0.001 29.2 5.4 32 159-190 9-40 (106)
120 1jnm_A Proto-oncogene C-JUN; B 47.1 24 0.00082 26.6 4.4 34 156-189 22-55 (62)
121 1ci6_A Transcription factor AT 47.0 57 0.0019 24.7 6.5 29 148-176 29-57 (63)
122 2dq0_A Seryl-tRNA synthetase; 46.9 1E+02 0.0035 31.9 10.5 28 330-369 314-341 (455)
123 2k48_A Nucleoprotein; viral pr 46.7 1.3E+02 0.0046 25.4 9.3 13 216-228 86-98 (107)
124 3u06_A Protein claret segregat 46.3 51 0.0018 33.7 8.1 33 158-190 5-37 (412)
125 1x79_B RAB GTPase binding effe 45.6 1.4E+02 0.0049 25.4 12.0 33 188-220 60-92 (112)
126 3iox_A AGI/II, PA; alpha helix 45.3 3E+02 0.01 29.1 13.9 28 108-135 9-40 (497)
127 1yke_B RNA polymerase II holoe 44.9 1.5E+02 0.0052 26.3 10.0 31 143-173 86-116 (151)
128 1ses_A Seryl-tRNA synthetase; 44.7 1.2E+02 0.0042 30.9 10.7 27 330-368 289-315 (421)
129 3ghg_C Fibrinogen gamma chain; 44.6 2.4E+02 0.0082 29.0 12.7 14 264-277 205-218 (411)
130 2oto_A M protein; helical coil 44.5 1.6E+02 0.0055 25.7 18.7 22 113-134 34-55 (155)
131 3iv1_A Tumor susceptibility ge 44.1 1.2E+02 0.0042 24.3 10.1 65 107-177 10-74 (78)
132 1lwu_C Fibrinogen gamma chain; 43.7 68 0.0023 32.0 8.3 14 264-277 127-140 (323)
133 3tnu_B Keratin, type II cytosk 43.1 1.5E+02 0.0052 25.1 13.0 27 156-182 36-62 (129)
134 4dk0_A Putative MACA; alpha-ha 42.9 1E+02 0.0034 29.8 9.3 51 200-259 124-174 (369)
135 1hjb_A Ccaat/enhancer binding 42.7 47 0.0016 27.1 5.8 36 146-181 40-75 (87)
136 3i00_A HIP-I, huntingtin-inter 42.6 1.6E+02 0.0055 25.2 11.6 20 107-126 14-33 (120)
137 1ykh_B RNA polymerase II holoe 42.1 1.7E+02 0.0058 25.3 10.5 33 143-175 86-118 (132)
138 3haj_A Human pacsin2 F-BAR; pa 42.0 3E+02 0.01 28.1 14.4 32 193-224 205-236 (486)
139 1a93_B MAX protein, coiled coi 41.9 39 0.0013 23.2 4.2 25 159-183 10-34 (34)
140 1ses_A Seryl-tRNA synthetase; 41.4 66 0.0023 32.9 8.0 85 149-244 28-112 (421)
141 3a2a_A Voltage-gated hydrogen 41.0 77 0.0026 24.0 6.1 35 150-184 12-46 (58)
142 2b9c_A Striated-muscle alpha t 40.8 1.9E+02 0.0065 25.5 13.2 23 113-135 22-44 (147)
143 1uix_A RHO-associated kinase; 40.6 1.3E+02 0.0046 23.7 10.6 45 163-207 4-48 (71)
144 3i00_A HIP-I, huntingtin-inter 40.6 1.7E+02 0.0059 25.0 11.8 15 154-168 20-34 (120)
145 3efg_A Protein SLYX homolog; x 40.5 1.1E+02 0.0038 24.2 7.6 38 147-184 12-49 (78)
146 1t2k_D Cyclic-AMP-dependent tr 39.1 74 0.0025 23.7 6.0 23 153-175 33-55 (61)
147 1fxk_A Prefoldin; archaeal pro 39.0 1.5E+02 0.0051 23.7 11.1 21 155-175 78-98 (107)
148 1nlw_A MAD protein, MAX dimeri 38.8 38 0.0013 26.9 4.6 29 152-180 50-78 (80)
149 2wt7_A Proto-oncogene protein 38.4 87 0.003 23.6 6.4 22 153-174 34-55 (63)
150 2f1m_A Acriflavine resistance 38.2 95 0.0032 28.7 8.0 19 210-228 110-128 (277)
151 2lw1_A ABC transporter ATP-bin 38.1 1.3E+02 0.0045 23.9 7.8 19 116-134 23-41 (89)
152 3cve_A Homer protein homolog 1 37.9 1.5E+02 0.0051 23.4 11.1 29 161-189 5-33 (72)
153 4emc_A Monopolin complex subun 37.8 2.5E+02 0.0086 26.0 10.6 36 152-187 23-58 (190)
154 1deq_A Fibrinogen (alpha chain 37.0 3.5E+02 0.012 27.7 12.3 17 276-292 184-200 (390)
155 4dzn_A Coiled-coil peptide CC- 37.0 74 0.0025 21.1 4.8 24 160-183 6-29 (33)
156 1wle_A Seryl-tRNA synthetase; 36.9 1.1E+02 0.0036 32.3 8.9 27 330-368 345-371 (501)
157 1t6f_A Geminin; coiled-coil, c 36.8 63 0.0021 22.4 4.7 25 165-189 9-33 (37)
158 1nkp_B MAX protein, MYC proto- 36.4 38 0.0013 26.7 4.2 30 152-181 50-79 (83)
159 3m9b_A Proteasome-associated A 35.9 42 0.0014 32.5 5.2 7 255-261 122-128 (251)
160 2yy0_A C-MYC-binding protein; 35.5 73 0.0025 23.5 5.3 25 147-171 24-48 (53)
161 1f5n_A Interferon-induced guan 35.3 4.4E+02 0.015 28.1 19.4 18 210-227 565-582 (592)
162 1gmj_A ATPase inhibitor; coile 35.1 1.2E+02 0.004 24.8 6.9 24 159-182 54-77 (84)
163 1m1j_B Fibrinogen beta chain; 35.0 4.1E+02 0.014 27.7 17.6 27 110-136 88-114 (464)
164 1nkp_A C-MYC, MYC proto-oncoge 34.9 67 0.0023 25.9 5.5 32 151-182 54-85 (88)
165 3bua_E HSNM1B, DNA cross-LINK 34.9 18 0.0006 24.8 1.6 18 389-406 5-22 (36)
166 1j1d_C Troponin I, TNI; THIN f 34.8 2.3E+02 0.0079 24.8 11.5 20 110-129 28-47 (133)
167 3ter_A Mammalian stromal inter 34.7 2.2E+02 0.0076 25.1 9.1 43 204-246 44-87 (136)
168 4gkw_A Spindle assembly abnorm 34.3 2.5E+02 0.0084 24.9 12.3 72 159-230 14-85 (167)
169 1fmh_A General control protein 34.2 65 0.0022 21.3 4.2 10 168-177 6-15 (33)
170 1s1c_X RHO-associated, coiled- 33.8 1.7E+02 0.0059 23.0 9.9 35 160-194 3-37 (71)
171 2v0o_A FCHO2, FCH domain only 33.0 2.9E+02 0.0098 25.3 18.2 23 112-134 130-152 (276)
172 4emc_A Monopolin complex subun 32.9 2.9E+02 0.0099 25.6 10.0 24 227-250 80-107 (190)
173 1zxa_A CGMP-dependent protein 32.5 79 0.0027 24.7 5.3 28 162-189 24-51 (67)
174 3etv_A Protein transport prote 31.8 1.4E+02 0.0048 30.2 8.3 56 113-168 14-71 (355)
175 3haj_A Human pacsin2 F-BAR; pa 31.8 4.3E+02 0.015 27.0 13.9 21 252-273 287-307 (486)
176 1m1j_B Fibrinogen beta chain; 31.3 4.7E+02 0.016 27.3 15.2 18 11-28 24-41 (464)
177 4h22_A Leucine-rich repeat fli 31.2 2.4E+02 0.0081 23.8 10.8 16 162-177 36-51 (103)
178 3vmx_A Voltage-gated hydrogen 30.7 1.6E+02 0.0055 21.6 7.1 35 150-184 5-39 (48)
179 2l5g_B Putative uncharacterize 30.5 1.1E+02 0.0036 22.0 5.2 27 145-171 5-31 (42)
180 3etw_A Adhesin A; antiparallel 30.3 2.6E+02 0.009 24.0 14.0 11 227-237 103-113 (119)
181 3gp4_A Transcriptional regulat 30.3 2.6E+02 0.0089 23.9 10.5 8 121-128 62-69 (142)
182 3rrk_A V-type ATPase 116 kDa s 30.3 1.7E+02 0.006 28.3 8.8 48 152-201 95-143 (357)
183 2wt7_B Transcription factor MA 30.2 2.3E+02 0.0078 23.2 9.4 24 165-188 50-73 (90)
184 1m1j_A Fibrinogen alpha subuni 30.1 5.1E+02 0.017 27.2 18.4 19 221-239 179-197 (491)
185 2dq3_A Seryl-tRNA synthetase; 30.0 49 0.0017 33.9 4.8 92 146-246 27-118 (425)
186 3lss_A Seryl-tRNA synthetase; 29.9 2.2E+02 0.0075 29.8 9.9 26 332-369 335-360 (484)
187 4b4t_K 26S protease regulatory 29.9 81 0.0028 32.4 6.5 7 264-270 168-174 (428)
188 1ik9_A DNA repair protein XRCC 29.7 3.5E+02 0.012 25.2 12.0 57 155-211 138-195 (213)
189 2xv5_A Lamin-A/C; structural p 29.6 1.3E+02 0.0044 23.7 6.2 36 154-189 3-38 (74)
190 2zdi_C Prefoldin subunit alpha 29.4 2.4E+02 0.0083 24.3 8.7 42 148-189 97-138 (151)
191 1g6u_A Domain swapped dimer; d 28.9 95 0.0032 22.1 4.7 17 161-177 25-41 (48)
192 2xnx_M M protein, M1-BC1; cell 28.8 3.1E+02 0.011 24.4 10.7 16 224-239 99-114 (146)
193 3m91_A Proteasome-associated A 28.3 1.8E+02 0.0061 21.4 6.6 29 161-189 14-42 (51)
194 3tkl_B LIDA protein, substrate 28.1 1.2E+02 0.004 29.0 6.6 45 110-154 44-90 (267)
195 2gd5_A Charged multivesicular 28.0 3.2E+02 0.011 24.2 11.3 39 145-183 10-48 (179)
196 1x79_B RAB GTPase binding effe 27.9 2.8E+02 0.0096 23.6 11.9 21 111-131 16-36 (112)
197 3m91_A Proteasome-associated A 27.1 1.9E+02 0.0065 21.3 6.5 30 151-180 18-47 (51)
198 2dgc_A Protein (GCN4); basic d 27.1 84 0.0029 23.9 4.6 26 159-184 33-58 (63)
199 1t3j_A Mitofusin 1; coiled coi 27.0 2.4E+02 0.0083 23.4 7.6 66 119-200 29-94 (96)
200 4dci_A Uncharacterized protein 26.5 3.4E+02 0.012 24.1 11.1 23 212-234 84-106 (150)
201 1jnm_A Proto-oncogene C-JUN; B 26.3 63 0.0021 24.2 3.7 19 154-172 34-52 (62)
202 2aze_B Transcription factor E2 26.2 1.1E+02 0.0039 25.5 5.7 22 230-251 55-76 (106)
203 1g6u_A Domain swapped dimer; d 26.0 1.8E+02 0.0061 20.7 6.7 21 164-184 21-41 (48)
204 1lwu_C Fibrinogen gamma chain; 25.8 1.3E+02 0.0043 30.1 6.8 9 295-303 89-97 (323)
205 1m1j_C Fibrinogen gamma chain; 25.6 5.5E+02 0.019 26.2 14.3 29 205-233 105-133 (409)
206 2dq3_A Seryl-tRNA synthetase; 25.5 87 0.003 32.0 5.8 29 107-136 30-58 (425)
207 3bbp_D GRIP and coiled-coil do 25.1 46 0.0016 26.3 2.8 46 147-192 20-65 (71)
208 2xnx_M M protein, M1-BC1; cell 25.1 3.6E+02 0.012 24.0 8.8 19 152-170 36-54 (146)
209 2qyw_A Vesicle transport throu 24.9 2.8E+02 0.0097 22.6 10.5 18 108-125 15-32 (102)
210 4fi5_A Nucleoprotein; structur 24.8 3.3E+02 0.011 23.3 8.7 32 141-172 21-52 (113)
211 2eqb_B RAB guanine nucleotide 24.8 3E+02 0.01 22.9 14.6 24 111-134 8-31 (97)
212 3tq7_B Microtubule-associated 24.7 86 0.0029 25.3 4.4 27 109-135 9-35 (82)
213 1j1e_C Troponin I, TNI; THIN f 24.0 4.2E+02 0.014 24.3 11.3 19 110-128 28-46 (180)
214 3tnf_B LIDA, RAS-related prote 23.8 2E+02 0.0067 28.7 7.5 48 107-154 24-73 (384)
215 3ra3_A P1C; coiled coil domain 23.1 42 0.0014 21.5 1.7 19 168-186 5-23 (28)
216 1gu4_A CAAT/enhancer binding p 23.1 1.6E+02 0.0054 23.4 5.7 30 147-176 41-70 (78)
217 2gd5_A Charged multivesicular 22.5 4.1E+02 0.014 23.5 13.4 25 146-170 25-49 (179)
218 3frt_A Charged multivesicular 22.4 4.8E+02 0.016 24.3 12.4 40 144-183 9-48 (218)
219 2p22_A Suppressor protein STP2 22.3 3.8E+02 0.013 24.4 8.8 39 195-233 53-91 (174)
220 1fzc_C Fibrin; blood coagulati 22.2 52 0.0018 32.8 3.2 12 266-277 120-131 (319)
221 3he5_B Synzip2; heterodimeric 21.5 2.3E+02 0.0079 20.4 6.9 7 155-161 23-29 (52)
222 3onj_A T-snare VTI1; helix, HA 21.2 3.3E+02 0.011 22.0 10.9 26 164-189 35-60 (97)
223 2fic_A Bridging integrator 1; 21.1 4.7E+02 0.016 23.8 13.4 11 105-115 109-119 (251)
224 1zhc_A Hypothetical protein HP 21.1 2.4E+02 0.0082 22.0 6.3 37 153-190 21-57 (76)
225 2ke4_A CDC42-interacting prote 21.0 3.5E+02 0.012 22.2 9.6 32 105-136 19-50 (98)
226 1nkp_B MAX protein, MYC proto- 20.7 1E+02 0.0034 24.2 4.1 25 161-185 52-76 (83)
227 2xdj_A Uncharacterized protein 20.6 3.3E+02 0.011 21.8 9.6 38 160-197 24-61 (83)
228 2dgc_A Protein (GCN4); basic d 20.4 1.7E+02 0.0058 22.1 5.1 28 162-189 29-56 (63)
229 4h22_A Leucine-rich repeat fli 20.3 3.9E+02 0.013 22.5 10.8 22 161-182 28-49 (103)
230 1zhc_A Hypothetical protein HP 20.3 1.9E+02 0.0066 22.5 5.6 19 165-183 19-37 (76)
231 3trt_A Vimentin; cytoskeleton, 20.0 2.9E+02 0.01 21.0 9.3 18 215-232 59-76 (77)
232 1x8y_A Lamin A/C; structural p 20.0 2.9E+02 0.0099 21.9 6.7 60 169-231 2-61 (86)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=6.5e-80 Score=584.09 Aligned_cols=192 Identities=44% Similarity=0.900 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 013164 209 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 288 (448)
Q Consensus 209 ~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 288 (448)
++++|++|+++|++++++||++|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeecCCCceEEecCC--ceeecccCC--CCcccccchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 013164 289 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL 364 (448)
Q Consensus 289 ~~~f~~~y~LvPmGS~SkI~~~~~--~~~~Lyg~~--~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~L 364 (448)
+++|+ +|+|+||||+|+|++..+ .+|+|||++ ++|++++||.||+|||+||+||++++++.+ ++++|
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l 152 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL 152 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence 99999 999999999999998654 589999754 789999999999999999999999998753 57999
Q ss_pred ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 013164 365 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN 409 (448)
Q Consensus 365 PY~I--~~dkI~-------g~SI~l~~n~~e~WTkAlK~lLtNlKwllaw~~~~ 409 (448)
||+| ++|||+ |+|||+++|++|+||+||||||||+||+|||++..
T Consensus 153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~ 206 (210)
T 4ddp_A 153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 206 (210)
T ss_dssp SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 799996 79999999999999999999999999999999863
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-73 Score=543.88 Aligned_cols=175 Identities=31% Similarity=0.559 Sum_probs=150.2
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEe----
Q 013164 234 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 309 (448)
Q Consensus 234 tNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~---- 309 (448)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ---cC---------CceeecccCCC-----Ccc-cccchHHHHHHHHHHHHHHHHHhccCC------------------C
Q 013164 310 ---SN---------NNTYELFGPVN-----LFW-STRYDKAMTLFLSCLKDFAEFANSKDQ------------------E 353 (448)
Q Consensus 310 ---~~---------~~~~~Lyg~~~-----lf~-~~kFD~AM~afL~cl~q~~~~~~~~d~------------------~ 353 (448)
.+ ..+|+|||+++ +|+ ++|||+||+|||+||+||++++++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNA 159 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 32 35799998864 575 469999999999999999999876432 0
Q ss_pred CCCCCCC-CCCCceeeeCCccceeeEEecC-CCCchhhHHHHHHHhhHHHHHHHHhhC
Q 013164 354 NNIPPDK-CFKLPYKIENDKVENYSITQSF-NKQENWTKALKYTLCNLKWALFWFVGN 409 (448)
Q Consensus 354 ~~~~~~~-~~~LPY~I~~dkI~g~SI~l~~-n~~e~WTkAlK~lLtNlKwllaw~~~~ 409 (448)
+++.++. +++|||+|++|||||+|||+++ |++|+|||||||||||+||+|||++..
T Consensus 160 ~~~~~~~~~l~LPY~I~~DkI~g~SIkl~~~~~~e~WTkAlK~~LtnlKwlLa~~S~~ 217 (220)
T 3vp7_A 160 NDVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNL 217 (220)
T ss_dssp ---------CCCSSCEETTEETTEESCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCeEeeCCcCCCEEEEeecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222 4999999999999999999987 579999999999999999999999864
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.72 E-value=1.3e-16 Score=134.85 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
+.+.+++..|+.+|.+|.++|.+||++++.++.+|..++.+...|+.+|.+||++||.|++++.+|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 013164 225 QAHLELLKRT 234 (448)
Q Consensus 225 ~~~Ld~L~kt 234 (448)
++||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.33 E-value=1.1e-07 Score=64.67 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=17.9
Q ss_pred CCccchHHHHHHHHHhhcCCcccCCc
Q 013164 75 SGFHSTITVLKRAFEIATSQTQVEQP 100 (448)
Q Consensus 75 ~~ls~~i~~l~~lFdIlS~~s~iDhP 100 (448)
.+||++++++++||||||++++||||
T Consensus 6 ~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 6 ENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------
T ss_pred ccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 56899999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.36 E-value=0.31 Score=44.07 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQ 132 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~ 132 (448)
+++.+..+..+.+.+..-+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.29 E-value=0.53 Score=43.98 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE 174 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~ 174 (448)
.+...+..++++++.|.+.|+..=+.|+.+ +.+++..+++..+.|...+..|..+...
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~E---------LE~eL~~~Ek~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAE---------LEAQLVQAEQRNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888777766532 3344444444444444444444444333
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.96 E-value=0.84 Score=41.14 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 013164 116 EVDDVTRDIEAY 127 (448)
Q Consensus 116 qle~~~~E~~~Y 127 (448)
++..+..+...+
T Consensus 28 ~l~~l~~~~~~~ 39 (284)
T 1c1g_A 28 DKKAAEDRSKQL 39 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.58 E-value=0.61 Score=38.89 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 013164 124 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 203 (448)
Q Consensus 124 ~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~ 203 (448)
+.+-..-|+.|+.+ +..+..++..|+.+...+..+|..++.+..+++.+-.....+...+.-+--+|-.+..++
T Consensus 6 ~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 6 SEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555532 456788889999999999999999999998888877777777666554433344444444
Q ss_pred HHHHHH
Q 013164 204 QFQLIA 209 (448)
Q Consensus 204 q~ql~~ 209 (448)
..++.-
T Consensus 80 ~~q~~~ 85 (96)
T 3q8t_A 80 ENQMRY 85 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.53 E-value=0.16 Score=53.24 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQN 172 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~ 172 (448)
+++..+.++.++...+++.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHhh
Confidence 3333333333333333333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.21 E-value=1.7 Score=39.30 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
+.+.+.+.|...|+++|.--+..+.....|+.++.+|++.=...=..|-..+..+-....++.++.+.+-+..+.+.+|+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 34555555555555555555555555555555555554322222233334455555556666677777788888888887
Q ss_pred h
Q 013164 233 R 233 (448)
Q Consensus 233 k 233 (448)
+
T Consensus 154 ~ 154 (155)
T 2efr_A 154 K 154 (155)
T ss_dssp T
T ss_pred c
Confidence 6
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.14 E-value=1.6 Score=41.71 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=8.1
Q ss_pred eeecCCCceEE
Q 013164 298 IIPMGSYPRIM 308 (448)
Q Consensus 298 LvPmGS~SkI~ 308 (448)
++.|=+|.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 66777788775
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.09 E-value=0.33 Score=50.83 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 194 ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 194 ~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+++-++.+..+.++..+++++..++.+++..+.++..|++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 3444444444555555555555666555555555544443
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.02 E-value=1.4 Score=42.07 Aligned_cols=6 Identities=33% Similarity=0.324 Sum_probs=2.4
Q ss_pred eeeecc
Q 013164 249 FGTINN 254 (448)
Q Consensus 249 fGTING 254 (448)
++.|.|
T Consensus 193 vv~v~~ 198 (256)
T 3na7_A 193 IVTIKK 198 (256)
T ss_dssp EEECBT
T ss_pred EEEeeC
Confidence 344433
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.84 E-value=0.19 Score=57.68 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
++.++..|+.+.+++++++.++.+|.+.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.28 E-value=0.59 Score=41.42 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 214 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~ 214 (448)
+..++.++..+-..|.++++++++|...+..++..++.+.+.+..+-+++-++++.++.+...++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888888888888888888887777776677777777777776655433
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.20 E-value=3.3 Score=37.95 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 175 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 175 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
+...+..|+.+.+++..-+.+.-.+...++-.+..++.+..+++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344455555555555555555666666666666666665555
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.17 E-value=3.3 Score=38.62 Aligned_cols=111 Identities=13% Similarity=0.243 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 013164 119 DVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELE 193 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~~~~~~~-~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l----~~eE 193 (448)
..+.|+..|..........-... ..-++|...-..| |..|+++|+.+++....+...+..|..+.... +..-
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL---E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL---EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766554443221000 0012333222222 23344555555555555555555554444333 3333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 013164 194 ERYWQEFNNFQFQLIAHQEERDAISSK---IEVSQAHLELLK 232 (448)
Q Consensus 194 ~~~w~e~n~~q~ql~~~~~e~~sl~~q---~~~~~~~Ld~L~ 232 (448)
.+.-...|.++.++..+...++.+..+ ++.++..|++=.
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345667888888888888777777654 344444454433
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.10 E-value=1 Score=57.21 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
+++|.++|++.++..++|.+++.+++++++.=+++=.+|.....+...++++.+..+.+++.|..-
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~L 2078 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655554444444555555555555555555555555555433
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.03 E-value=5 Score=36.27 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
+.+..++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.79 E-value=3.5 Score=52.48 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 104 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 104 eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
|-...-..-|.++..++...++.|..=|++|..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666777777778888888887753
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.68 E-value=6.3 Score=32.50 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+.....+..||.+...|+.++..+.... -.....-|..+.++++.++.....++..+..+++.....++.+++
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455566666666666666554322 233455688888999999999999999999999998888888874
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.66 E-value=5.3 Score=32.52 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
++..++.+-..+...+...++.+.++......+.. +.|+++.++.+.++.+..|.++-.....+|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~--------------ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLE--------------QKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433 3444444466666666666655555555544
Q ss_pred HH
Q 013164 230 LL 231 (448)
Q Consensus 230 ~L 231 (448)
-|
T Consensus 81 el 82 (89)
T 3bas_A 81 RL 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.40 E-value=5.1 Score=34.31 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 207 LIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 207 l~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
-.....+.+.|..++.+.+.++.+|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3344555666666666666666554
No 24
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.32 E-value=8.3 Score=31.87 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 229 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 229 (448)
.....++.++..+.++...++..+......+.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443333
No 25
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.49 E-value=8.7 Score=39.19 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013164 175 VNAELKELELKSKRFKELEERYWQEFNNFQFQL 207 (448)
Q Consensus 175 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql 207 (448)
..++.+....+.+.+.++.++.-++..++..++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 333333333333333333333333333333333
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.25 E-value=3.4 Score=37.32 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e 185 (448)
.|..|++++..++.++.+++.+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeee 90 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEV 90 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.20 E-value=8.7 Score=34.65 Aligned_cols=63 Identities=17% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 218 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~ 218 (448)
..+..|+.|...+..+|.+++.+..+..+.+..+..|...|. -++|.++-.+..++.|.+.|-
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555555554555544444443 224444444445555544443
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.86 E-value=9 Score=30.49 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 198 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 198 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.++..++..+..++++++.++.++..++..|+.-.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777766544
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.28 E-value=12 Score=38.17 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
++++-...+++.+.+...+.+.
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~ 379 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNG 379 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3443344455555555444443
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.82 E-value=8.3 Score=34.00 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 207 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql 207 (448)
+-.|--++..+.+.|+.+.+++..|+.+|..+...++..-+..-++...++.+.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666666665555554443333333333333333
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.37 E-value=12 Score=30.40 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
++.+++....+......+|+.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555556666666666666665544
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.82 E-value=16 Score=31.29 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..|+.....+.-|++.|..-++....+... ....+++++..|..+.+.+...|.+||.....++..-+... .-|.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~---~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI---VSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH---hhHH
Confidence 457888888999999999888776554321 12457888888999999999999999999888877544433 3455
Q ss_pred HHHHHHHHHH
Q 013164 191 ELEERYWQEF 200 (448)
Q Consensus 191 ~eE~~~w~e~ 200 (448)
+.|..|=+.+
T Consensus 81 D~E~k~n~ai 90 (111)
T 2v66_B 81 DFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5665555433
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.23 E-value=23 Score=36.31 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCC-CCChH
Q 013164 221 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKI-PVEWD 268 (448)
Q Consensus 221 ~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~-~V~W~ 268 (448)
|+..+.||+.+..+|.+... .+ -++..|..+-+++. |=+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 44455678888888877642 11 23666777766653 33555
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.41 E-value=18 Score=29.99 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQR 133 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~ 133 (448)
++.+++.+..+..|.+.+..-...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~ 27 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQ 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444433
No 35
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.03 E-value=4 Score=32.53 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+++..+.+-.+|.+..+..|+++|++..+.+++|..|+.+...+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455556666677888888888888888777766544
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.99 E-value=8.5 Score=31.82 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
-...|+...+.+..+++.|+++...+..++.+++.++.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666677777766666666666665543
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.79 E-value=19 Score=29.73 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYE 128 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~ 128 (448)
+.+++.+..+..|.+.+.
T Consensus 5 d~iKkKm~~lk~e~e~a~ 22 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAI 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=81.86 E-value=19 Score=29.14 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=23.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013164 199 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 199 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
+++.++..+-...-.+-.|+++++..+.+|.-|++.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555556777777777788777763
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.34 E-value=24 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
..-+..|.++++.+..|+.....-+..+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677766666666665555544
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.27 E-value=20 Score=29.06 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKE 181 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~ 181 (448)
++++|..+...+.++...
T Consensus 28 EieELKekN~~L~~e~~e 45 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 41
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=80.88 E-value=28 Score=36.83 Aligned_cols=94 Identities=19% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 121 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 200 (448)
Q Consensus 121 ~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~ 200 (448)
+.+..+|+.-|.|+++...+ -.++.++.+.++..+-++..+|.+.+++..++..+.-+ .++++.++.=..|=+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye---~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYE---AKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45566788888887754321 11233334444445555555555555555544433211 12222222223344445
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 013164 201 NNFQFQLIAHQEERDAISS 219 (448)
Q Consensus 201 n~~q~ql~~~~~e~~sl~~ 219 (448)
-+++.++...++++..+..
T Consensus 83 AeY~~kl~aYe~~~~~~~k 101 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKA 101 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555556666665544433
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.57 E-value=17 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAE 178 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~e 178 (448)
++.+-..|...+..+|.+.+.+...
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 43
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=79.67 E-value=24 Score=28.96 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
...+.+...+..++..+..+...++.++..++.+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555444444433
No 44
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.39 E-value=16 Score=37.10 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
+.++++|.|...++.+|+.++.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.74 E-value=31 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
|+..+...-..|..+|+.+...++.++..|.++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444444445555544444444444443
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.53 E-value=22 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcCC
Q 013164 276 QACLLLHTMCQYFRP 290 (448)
Q Consensus 276 Q~~LLL~tla~~l~~ 290 (448)
|==.|.+.+|.-|-.
T Consensus 181 ~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 181 QQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhhcccCC
Confidence 445677888877654
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.42 E-value=38 Score=30.50 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 203 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 203 ~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
++.....++.........++..+.+|..|+.
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455566666777777764
No 48
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.34 E-value=32 Score=28.99 Aligned_cols=61 Identities=25% Similarity=0.463 Sum_probs=33.7
Q ss_pred HHHHHH-HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 126 AYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 126 ~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
+|.++- ++|. .++..++..+-..||.....++.+-..+..........+.+|+.|..+|..
T Consensus 18 ~YE~~h~ErL~-----~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 18 TYERYHTESLQ-----NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 466554 4454 355666666666666666655555555544444445555556555555543
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.26 E-value=55 Score=34.94 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 013164 220 KIEVSQAHLELLKRTNVLN 238 (448)
Q Consensus 220 q~~~~~~~Ld~L~ktNv~n 238 (448)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4666677888888888877
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.06 E-value=27 Score=30.02 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el 179 (448)
.-..|..+|+.+...++.++..|
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333344444444433333333
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.52 E-value=13 Score=30.31 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
-...|+...+.+..+++.++++...+..++.+++..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666777777777777766666666544
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.63 E-value=9.9 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
-..+...|..++++|+++..+|..++..|+.|...|.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888888888888888777666643
No 53
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.04 E-value=28 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.+|..-+..|+.|.++++..+..++.+.++|
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444
No 54
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=74.99 E-value=49 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 203 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 203 ~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
-+....+++.|...++.+++.+..+++++|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777788888899999999999999875
No 55
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=74.54 E-value=42 Score=29.04 Aligned_cols=109 Identities=13% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 013164 119 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 188 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~~~~~~~~~e-e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el---------~~le~e~~~ 188 (448)
.++.|...|..++.-|+.+.. .+.. -++ ..+..+-++...+..+|..++.++.++..++ .++-..
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~-~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~--- 86 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETE-ALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA--- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh---
Confidence 345666778888887776542 1222 232 3566677788888888888888888775432 111111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 013164 189 FKELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKR 233 (448)
Q Consensus 189 l~~eE~~~w~e~n~~q~ql~~~~~e~~sl-~~q~~~~~~~Ld~L~k 233 (448)
...=...|.....+-.+..+.-+....+ ..++.+.+.-|+-|+.
T Consensus 87 -~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 -HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111357888777766665544444433 4567777777888873
No 56
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=74.47 E-value=31 Score=33.26 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
.|..+-+.+..+|+-|+=.+.-...||.++..++++|+..-+.....+-.++.+-..+++++..++.+++.++
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888888888888888888888776666666666666666666666666665555443
No 57
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.76 E-value=28 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
|+.+..+.|--|..-|..|+..+..-+.+++..+.+++.|.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555554444444444444443
No 58
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.98 E-value=1.4 Score=47.10 Aligned_cols=7 Identities=0% Similarity=0.340 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 013164 111 DKLDKEV 117 (448)
Q Consensus 111 e~Ld~ql 117 (448)
++|+.|-
T Consensus 303 qqm~~~a 309 (575)
T 2i1j_A 303 QQMKAQA 309 (575)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 59
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.92 E-value=14 Score=29.95 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+|+.++...-..+..+|.+.|+...+|..|++.++.+..+|
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555666666777777766666666665544
No 60
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=72.51 E-value=44 Score=28.33 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------cccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEA-----------RDVLSEAD---FLKEKLKIEEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~-----------~~~~~ee~---l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 175 (448)
.+....++..+..++..+..-|..|.... ...++... +..=+..|+........++..++.+.+..
T Consensus 21 ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~ 100 (150)
T 3ajw_A 21 VDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLA 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443210 11122232 22334557777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 013164 176 NAELKELELKSKRFKELEERYWQEFNNFQ 204 (448)
Q Consensus 176 ~~el~~le~e~~~l~~eE~~~w~e~n~~q 204 (448)
..++.+...+.+.++.+.++...++....
T Consensus 101 r~~l~~a~~~~k~~e~L~er~~~~~~~~~ 129 (150)
T 3ajw_A 101 LKSWREKKQRLQAWQTLQDRQTAAALLAE 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877776666665443
No 61
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.20 E-value=32 Score=27.74 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
+|.+-..|+..+..++.+.+.-..+...++.|.
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El 50 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEV 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443333333333333
No 62
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.06 E-value=12 Score=36.97 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKS 186 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~ 186 (448)
.++++.|+.+.+++.+|+.+|+.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665443
No 63
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=71.92 E-value=47 Score=30.41 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~----------~w~e~n~~q~ql~~~~~e~~s 216 (448)
+.+-...|..+..++..+++.||++...++.++..++.+...+++.+.. .--.-..+..|+.++..+-.+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~A 126 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYA 126 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHH
Confidence 3444455677777788888888888888888888887755554433211 000112344667776666666
Q ss_pred HHHHHHHHH
Q 013164 217 ISSKIEVSQ 225 (448)
Q Consensus 217 l~~q~~~~~ 225 (448)
++.-+-+..
T Consensus 127 ieDaIy~L~ 135 (174)
T 2p22_A 127 LTDTIECLS 135 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554444
No 64
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=71.79 E-value=2.9 Score=34.37 Aligned_cols=10 Identities=10% Similarity=0.415 Sum_probs=6.6
Q ss_pred HHHHHHhHHH
Q 013164 195 RYWQEFNNFQ 204 (448)
Q Consensus 195 ~~w~e~n~~q 204 (448)
+..++||+.+
T Consensus 45 ~~Lh~YNeiK 54 (85)
T 3viq_B 45 DLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 4467777775
No 65
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.39 E-value=60 Score=33.44 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
+.+-++++.+..+...|...++..
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555666666666554
No 66
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.20 E-value=45 Score=27.55 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 209 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~ 209 (448)
+...++.++....+++.++.+|..+...++.+=+.+-..+...+..+.+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666655555544333344444444433333
No 67
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.06 E-value=41 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
|+.+-+.+.+.|+++|.+...++..+..++..+..=
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 444555566677777777777777777776655443
No 68
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.87 E-value=30 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQN 172 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~ 172 (448)
+++..|+.+...|++++.+|+.+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 69
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=69.83 E-value=60 Score=34.44 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.++.+|.+.+++++||...++-..++
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~ 340 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARN 340 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666554443333
No 70
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.09 E-value=27 Score=28.52 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 191 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~ 191 (448)
-...+..+..+..+|++|.+.|..++..|+.|...|..
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888888888888877766643
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.86 E-value=63 Score=27.94 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 013164 120 VTRDIEAYEACLQ 132 (448)
Q Consensus 120 ~~~E~~~Y~~fL~ 132 (448)
++.||..-...|+
T Consensus 19 Aq~ECrN~T~lLq 31 (121)
T 3mq7_A 19 AVMEARNVTHLLQ 31 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 3455555555554
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=66.82 E-value=77 Score=28.93 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
..|++|++++..-+.+=..--.++++.. .++.+....++..-++|...+..|+..+..|++++..|+.
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~------tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSH------TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777766666655555665532 2333444444555555555555555555555555555543
No 73
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=66.51 E-value=34 Score=29.67 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 013164 214 RDAISSKIEVSQAHLE 229 (448)
Q Consensus 214 ~~sl~~q~~~~~~~Ld 229 (448)
-..|..+|.-....|+
T Consensus 73 Y~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 73 YQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555544444
No 74
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=66.34 E-value=53 Score=26.94 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 209 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~ 209 (448)
+..+++.++....+++.++.+|+.+...++.+=+.+-..+...+..+..
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666666655555544433344444444444433
No 75
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=66.13 E-value=25 Score=33.83 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013164 205 FQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 205 ~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGr 259 (448)
.++...+.++.++++++..++.+|+.++.. +=+..-.=-+||.+..+| ...|.
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~-l~~~~i~AP~~G~V~~~~-~~~G~ 173 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTAKTN-LDYTRIVAPMAGEVTQIT-TLQGQ 173 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTTTTT-TTSSEEECSSSEEEEEES-SCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCEEECCCCeEEEEEe-cCCCC
Confidence 334444445555666666666666554322 111112222456555554 24443
No 76
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.74 E-value=5 Score=42.95 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013164 119 DVTRDIEAYEACLQRLE 135 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~ 135 (448)
++++++..|..-|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44555555555555544
No 77
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=65.64 E-value=70 Score=28.05 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 175 (448)
+.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-+.|..++.++..+.+.+
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777776555544322 13344445556655566666666665555444
No 78
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=65.19 E-value=33 Score=33.21 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 204 QFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 204 q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666666554
No 79
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.72 E-value=65 Score=27.33 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 013164 127 YEACLQRLE 135 (448)
Q Consensus 127 Y~~fL~~L~ 135 (448)
|...+..|+
T Consensus 18 ye~~I~~LR 26 (119)
T 3ol1_A 18 YEEEMRELR 26 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 80
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=64.36 E-value=68 Score=27.41 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 013164 214 RDAISSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 214 ~~sl~~q~~~~~~~Ld~L~ktN 235 (448)
|.-+....+..+.+|..|++-|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666777777888877654
No 81
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.60 E-value=23 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
....|+.+.+.|+.+...|..++..|+.|...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666655554
No 82
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=62.24 E-value=57 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
++.+|.+-..|+..+..++...+.-..+...++.|.+.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555554444444444444444333
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=61.46 E-value=76 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 105 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 105 C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
.....+..|++++..+..+++.|..++..|+.
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777777777776664
No 84
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=60.75 E-value=80 Score=31.97 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 215 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~ 215 (448)
..|...-+.|...|+++.....+++++|+...+...+++ ++.|.++-++..+...+|
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd 257 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRD 257 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHH
Confidence 344444445555555555555555555444433332222 556666666655544444
No 85
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.70 E-value=49 Score=34.84 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
.++..|.++.+++..++++|+.++.++.++|.++..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888889999999999998888887654
No 86
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=60.62 E-value=39 Score=28.93 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 013164 119 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 189 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el---------~~le~e~~~l 189 (448)
.+.++++.|..++.-|+.+.. .+..-++ ..+..+-+++..+..+|..++.++.++...+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~-~L~~~d~-~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQ-ALERREL-PVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 345677778888887776542 1111111 2566777888889999999999888775543 111000 001
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 013164 190 KELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKRTN 235 (448)
Q Consensus 190 ~~eE~~~w~e~n~~q~ql~~~~~e~~sl-~~q~~~~~~~Ld~L~ktN 235 (448)
..+=...|......-.++.+.-+....+ ..++++.+.-|+.|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111357887777766665544444433 456778888888887643
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.53 E-value=25 Score=35.88 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=6.0
Q ss_pred CChHHHHHHHHH
Q 013164 265 VEWDEINAAWGQ 276 (448)
Q Consensus 265 V~W~EINAAwGQ 276 (448)
..=.||=...+.
T Consensus 120 ~~Q~~Vf~~v~~ 131 (403)
T 4etp_A 120 DTNVDVFKEVGQ 131 (403)
T ss_dssp CCHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 344555555554
No 88
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=59.83 E-value=84 Score=31.17 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccC-CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 109 LSDKLDKEVDDVTRD---IEAYEACLQRLEGEARDVL-SEADFLKEKLK-IEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 109 Lle~Ld~qle~~~~E---~~~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~-Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
-.++|+.++..+++- ..+|+.+|.+|..+....+ +..++...+.. |+.| .++..+-.++...+.+|+.+|+.|
T Consensus 25 ~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~~k~~Le~~ierL 102 (302)
T 3ibp_A 25 EQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVGARKNAVDEEIERL 102 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666553 4456788888876542222 34566666644 4444 555555555555555555555554
No 89
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.97 E-value=42 Score=28.20 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=20.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 98 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 98 DhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
+.|++.+ =++.+.++++.++.|++...+..+.|+
T Consensus 6 ~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 6 SFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp ---CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 445567777777777777777777665
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.61 E-value=56 Score=28.85 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013164 167 ETEKQNAEVNAELKELE 183 (448)
Q Consensus 167 ~lE~e~~~l~~el~~le 183 (448)
++|+++..++.|+++|-
T Consensus 64 ~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 91
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.52 E-value=82 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 209 AHQEERDAISSKIEVSQAHLELLK 232 (448)
Q Consensus 209 ~~~~e~~sl~~q~~~~~~~Ld~L~ 232 (448)
....+...|..++.+.+.++.+|.
T Consensus 65 kl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655554
No 92
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.49 E-value=94 Score=26.85 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.+.+++|+.|...+.++|.++.++.++|.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555555553
No 93
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.32 E-value=36 Score=34.65 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e 185 (448)
.+++.|+++.+++++++++++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 94
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.08 E-value=44 Score=34.65 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 226 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 226 (448)
+..++..|.++.+++..++++|..++.++.++|..+....++. ++...+...+..++.+++++...++.++...
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 102 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYY-- 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3456677888888888999999999988888888764321111 1223334444444444444444444443322
Q ss_pred HHHHHhhcccCCCceeeeec
Q 013164 227 HLELLKRTNVLNDAFPIWHD 246 (448)
Q Consensus 227 ~Ld~L~ktNv~nd~F~I~hd 246 (448)
.|+==|+..+.=+++.|
T Consensus 103 ---~~~ipN~~~~~vP~g~~ 119 (455)
T 2dq0_A 103 ---LWRLPNITHPSVPVGKD 119 (455)
T ss_dssp ---HTTSCCCCCTTSCCCSS
T ss_pred ---HHhCCCCCCccCCCCCC
Confidence 23334666665565543
No 95
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=56.98 E-value=19 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
-+.||+.++.++..+..|+.+.+.|+
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766655543
No 96
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=56.59 E-value=2.1e+02 Score=30.60 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 013164 218 SSKIEVSQAHLELLKRT 234 (448)
Q Consensus 218 ~~q~~~~~~~Ld~L~kt 234 (448)
.++....+++++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34556666777777776
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.43 E-value=33 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
...|..+.+.|+.+...|..++..|+.+...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665554443
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.18 E-value=40 Score=26.98 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
-...+..+..+..+|+++...|..++..|+.|...|.
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677888899999999998888888776664
No 99
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.92 E-value=30 Score=35.52 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
|+.|..++.+++++++++.+++.++++.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 100
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.75 E-value=90 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 013164 169 EKQNAEVNAELKE 181 (448)
Q Consensus 169 E~e~~~l~~el~~ 181 (448)
|+++..++.|+++
T Consensus 46 E~~~~~ie~ElEe 58 (97)
T 2eqb_B 46 EEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 101
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=54.95 E-value=81 Score=33.12 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
..++..|.++-+++..++++|..++..+.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667788888888888888888888888877654
No 102
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.32 E-value=31 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 103
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=53.65 E-value=76 Score=27.40 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 013164 216 AISSKIEVSQAHL 228 (448)
Q Consensus 216 sl~~q~~~~~~~L 228 (448)
.+-.+|.-...+|
T Consensus 75 ~l~k~Y~~~~keL 87 (119)
T 3etw_A 75 ELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.40 E-value=1e+02 Score=25.96 Aligned_cols=82 Identities=11% Similarity=0.226 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc--------------cCC--------------HHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----RD--------------VLS--------------EADFLKEKLKIE 155 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~----~~--------------~~~--------------ee~l~~e~~~Le 155 (448)
..++.+..++..+......|..+++.|+.-. .+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 3455666666677777777887776654311 00 000 111233444456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
...+.+...++.+++..+.+.+++..++.++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777777666666555443
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.28 E-value=30 Score=28.52 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013164 210 HQEERDAISSKI 221 (448)
Q Consensus 210 ~~~e~~sl~~q~ 221 (448)
+..|++.+..+|
T Consensus 74 ~~~e~d~~k~k~ 85 (90)
T 2wt7_B 74 LARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 106
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.04 E-value=54 Score=34.48 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 227 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 227 (448)
..++..|.++.+++..++++|..++.++.++|..+....++. +..-.+...+ .++...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~----~~l~~~~~~l-------~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA----KDLIAEKEKL-------SNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888888887664322111 1122333333 34444444444444444
Q ss_pred HHH--HhhcccCCCceeeeec
Q 013164 228 LEL--LKRTNVLNDAFPIWHD 246 (448)
Q Consensus 228 Ld~--L~ktNv~nd~F~I~hd 246 (448)
++. |+==|+..+.=+|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 432 2224777777677644
No 107
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.93 E-value=30 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~~~l 189 (448)
|.+|.+.+..|+..|+-|+..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 108
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=52.23 E-value=1.1e+02 Score=26.71 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK-EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~-e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.|.+.+..++++...+..-++.+.......-..+-+.. -...|+..+.+| ..|++|.....+++.++..++.++..++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777665433211000010100 011222222222 1235566677777777777777666554
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 191 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 191 ~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
... .... .-+..++..+..-.+.++-.+..|+.+
T Consensus 89 ~~~-----~~~~--~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 89 ENN-----NVED--YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp C---------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1111 113333444444455555555555543
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.64 E-value=60 Score=25.75 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 013164 225 QAHLELLK 232 (448)
Q Consensus 225 ~~~Ld~L~ 232 (448)
+.+||+++
T Consensus 60 qseLDKfr 67 (72)
T 3nmd_A 60 QNELDKYR 67 (72)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 33444443
No 110
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.34 E-value=23 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAEL 179 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el 179 (448)
+.|..|-.+|.+++++|.++.+++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666655555544
No 111
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=49.90 E-value=1.5e+02 Score=27.09 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 216 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~s 216 (448)
..-+.|...|.+++.....|+.+|+........++ ++.|+++=++..+...+|.
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relE-------RemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREID-------KRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHH
Confidence 34445666677777777777666665554444333 5677777777666655543
No 112
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.31 E-value=30 Score=29.07 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 157 EERKLEAAIEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 157 EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~ 188 (448)
+-..|.++|+.|+.|+..|.+++..|+.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777666543
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.09 E-value=88 Score=25.33 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
.|-+|.+.|.-.+.++|.|+.+.+..|++-++|+..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46677778888888888888888887777776555443
No 114
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=48.79 E-value=1.2e+02 Score=25.61 Aligned_cols=44 Identities=11% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 205 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 205 (448)
.++|.+...+.+++.+++..++...+.++.+-.-|+..+.+.+.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555655555555444445554444433
No 115
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.46 E-value=79 Score=30.19 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 204 QFQLIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 204 q~ql~~~~~e~~sl~~q~~~~~~~L 228 (448)
+.++...+.++..++++++.++.+|
T Consensus 127 ~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 127 QAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444445555444443
No 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.43 E-value=89 Score=32.83 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 013164 330 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 368 (448)
Q Consensus 330 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 368 (448)
+.+...|-.++.-..++++. +.|||++
T Consensus 310 e~s~~e~e~ml~~~e~il~~------------LgLpyrv 336 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQS------------LGLPYRV 336 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 56777777776666666543 5777776
No 117
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.07 E-value=1.1e+02 Score=24.79 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=0.4
Q ss_pred HHHHHHHH
Q 013164 120 VTRDIEAY 127 (448)
Q Consensus 120 ~~~E~~~Y 127 (448)
+++++..|
T Consensus 7 ~Ekd~~~~ 14 (81)
T 3qh9_A 7 MEKEQREQ 14 (81)
T ss_dssp -------C
T ss_pred Hhhhhhhh
Confidence 33444333
No 118
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.63 E-value=16 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~~~l 189 (448)
|.+..+++.+|+..|+-|+..|
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4444555555555555555444
No 119
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=47.13 E-value=29 Score=29.17 Aligned_cols=32 Identities=3% Similarity=0.129 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
..|.+||+.|+.+...|++.|..++..++.+.
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666666655554
No 120
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.11 E-value=24 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.....|+.+++.|+.+...|..++..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666665544
No 121
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.97 E-value=57 Score=24.73 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVN 176 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 176 (448)
..+...|+.+-..|..++..|+.|...|.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444443
No 122
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=46.87 E-value=1e+02 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 013164 330 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 369 (448)
Q Consensus 330 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 369 (448)
+.+...|-.++.-..+++.. +.|||++.
T Consensus 314 e~s~~~~~e~l~~~~~il~~------------LGL~yrv~ 341 (455)
T 2dq0_A 314 EESWEWHEKIIRNAEELFQE------------LEIPYRVV 341 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHH------------TTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------cCCceEEE
Confidence 56777777777666666643 57788764
No 123
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.67 E-value=1.3e+02 Score=25.41 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 013164 216 AISSKIEVSQAHL 228 (448)
Q Consensus 216 sl~~q~~~~~~~L 228 (448)
++++++...+.+|
T Consensus 86 alq~KiaeLKrqL 98 (107)
T 2k48_A 86 TLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333333
No 124
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.31 E-value=51 Score=33.73 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 158 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 158 E~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
...|..||.+++++.++++++++.++.+.+.+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655544443
No 125
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.59 E-value=1.4e+02 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013164 188 RFKELEERYWQEFNNFQFQLIAHQEERDAISSK 220 (448)
Q Consensus 188 ~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q 220 (448)
.|.++-+.|-+-.++.+.++..+...|..+..+
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666676666666555443
No 126
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=45.31 E-value=3e+02 Score=29.08 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 013164 108 VLSDKLDKEVDDVTRDIE----AYEACLQRLE 135 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~----~Y~~fL~~L~ 135 (448)
.-|..++++++.+++... +|+.-|...+
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~ 40 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANN 40 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777665433 3666555544
No 127
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.86 E-value=1.5e+02 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 143 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 173 (448)
Q Consensus 143 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~ 173 (448)
++++-.+.+.+|++|-+...+++++.-++.+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae 116 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555445555555555554444444443333
No 128
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.71 E-value=1.2e+02 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 013164 330 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 368 (448)
Q Consensus 330 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 368 (448)
+.+...|-.++.-..+++.. +.|||++
T Consensus 289 e~s~~~~~e~~~~~~~il~~------------LGL~~rv 315 (421)
T 1ses_A 289 EASDRAFQELLENAEEILRL------------LELPYRL 315 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceEE
Confidence 56777666666666666643 6778875
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.57 E-value=2.4e+02 Score=29.04 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=9.2
Q ss_pred CCChHHHHHHHHHH
Q 013164 264 PVEWDEINAAWGQA 277 (448)
Q Consensus 264 ~V~W~EINAAwGQ~ 277 (448)
.=.|+|-=.++|.+
T Consensus 205 ~R~W~eYk~GFG~l 218 (411)
T 3ghg_C 205 KKNWIQYKEGFGHL 218 (411)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHhcccCCc
Confidence 34677777777754
No 130
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=44.52 E-value=1.6e+02 Score=25.69 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555554444444333333
No 131
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.09 E-value=1.2e+02 Score=24.27 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 177 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~ 177 (448)
|.|--.|...+.+...|.++..+--+.|.... ..+..-+.+|+.|+..+..+++-+....+++..
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655554444443221 223344456677777777777776666665543
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.66 E-value=68 Score=32.01 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCChHHHHHHHHHH
Q 013164 264 PVEWDEINAAWGQA 277 (448)
Q Consensus 264 ~V~W~EINAAwGQ~ 277 (448)
.-.|.|-=.++|.+
T Consensus 127 ~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 127 TRDWVSYREGFGYL 140 (323)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHhhhhCCc
Confidence 34788877777765
No 133
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.11 E-value=1.5e+02 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 156 EEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 156 ~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
.|..++...+..|+.+.+.+......|
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333344444444444333333333
No 134
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=42.88 E-value=1e+02 Score=29.75 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013164 200 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 259 (448)
Q Consensus 200 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGr 259 (448)
+...+.++...+.++..++++++.++.+|+ ++.|... .||.+..+| ...|.
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~---~~~i~AP-----~~G~V~~~~-~~~G~ 174 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVNTAETNLG---YTKITSP-----IDGTVISTP-VSEGQ 174 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSSCCCS-----CCSCCCBCC-CCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCEEECC-----CCeEEEEee-CCCCC
Confidence 344445555556666677777777776654 4444332 356555443 24443
No 135
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.66 E-value=47 Score=27.10 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
++..+...|+.|-..|..+|++|++|...+..-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666777777666666666554443
No 136
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=42.63 E-value=1.6e+02 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEA 126 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~ 126 (448)
|.+|+.|+.+++.+..|.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776555544
No 137
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.06 E-value=1.7e+02 Score=25.26 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 143 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 143 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l 175 (448)
++++-.+.+.+|++|-+...+++++.-++.+.+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544555555555555555544444443333
No 138
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=41.97 E-value=3e+02 Score=28.14 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 193 EERYWQEFNNFQFQLIAHQEERDAISSKIEVS 224 (448)
Q Consensus 193 E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 224 (448)
+++|-..+..+......+..+...+..+++..
T Consensus 205 ~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 205 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 139
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.94 E-value=39 Score=23.20 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
....++|++|+++...|+.+++.||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445677777777777777776553
No 140
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.41 E-value=66 Score=32.90 Aligned_cols=85 Identities=14% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 228 (448)
.++..+.++.+++..++++|+.++.++.++|.+ . .. +.-++...+...+..++.+++++...++.++..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~-~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 96 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK-A-PP----EEKEALIARGKALGEEAKRLEEALREKEARLEA----- 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-S-CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455667778888888888888888888877765 1 10 011122333333444444433333333333322
Q ss_pred HHHhhcccCCCceeee
Q 013164 229 ELLKRTNVLNDAFPIW 244 (448)
Q Consensus 229 d~L~ktNv~nd~F~I~ 244 (448)
..|+==|+..+.=+++
T Consensus 97 ~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 97 LLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHTTCCCCCCTTSCSS
T ss_pred HHHhCCCCCCCCCCCC
Confidence 1234457777666666
No 141
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.96 E-value=77 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
.+.+|++--..|...+..||..+.+.++|+..|.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778889999999999988888887764
No 142
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.78 E-value=1.9e+02 Score=25.48 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
...+++.+++..+.=.+-.+.|+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 143
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=40.63 E-value=1.3e+02 Score=23.68 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 013164 163 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 207 (448)
Q Consensus 163 ~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql 207 (448)
..+..+.+|++++.+.++.++.+...+.++|.+.-.....|..++
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777666666655544333333444443
No 144
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.61 E-value=1.7e+02 Score=25.00 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEET 168 (448)
Q Consensus 154 Le~EE~~L~~eL~~l 168 (448)
|..|-..|..+|+.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 145
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=40.47 E-value=1.1e+02 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
+...+.+||....-.+..|++|-....+...+|..|+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ 49 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAE 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344443333333333333333
No 146
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.11 E-value=74 Score=23.68 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l 175 (448)
.|+.+-..|..++..|..|...|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 147
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.99 E-value=1.5e+02 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEV 175 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l 175 (448)
+.+.+.|..++..++++..++
T Consensus 78 ~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 148
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.79 E-value=38 Score=26.93 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
..|+.++.++..+++.|..+...|.++|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777777776666554
No 149
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.36 E-value=87 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAE 174 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~ 174 (448)
.|+.+-..|..++..|..+...
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333
No 150
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=38.23 E-value=95 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 210 HQEERDAISSKIEVSQAHL 228 (448)
Q Consensus 210 ~~~e~~sl~~q~~~~~~~L 228 (448)
.+.++.+.+++++.++.+|
T Consensus 110 a~a~l~~a~a~l~~a~~~l 128 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINL 128 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444455555555444
No 151
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.09 E-value=1.3e+02 Score=23.90 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 116 EVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 116 qle~~~~E~~~Y~~fL~~L 134 (448)
+++.+..++.....-+..|
T Consensus 23 Ele~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 152
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.88 E-value=1.5e+02 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+.+.|+++|.+...++..+..++..+..=
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45667777777777777777776655443
No 153
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.82 E-value=2.5e+02 Score=26.03 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 187 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~ 187 (448)
.+|-.|-..|.++|+..+.|.+.+..++..++.+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555566666666666666666666666655543
No 154
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.98 E-value=3.5e+02 Score=27.67 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhcCCCC
Q 013164 276 QACLLLHTMCQYFRPKF 292 (448)
Q Consensus 276 Q~~LLL~tla~~l~~~f 292 (448)
|-=.|+++++..|-...
T Consensus 184 qqKQL~qv~a~~llP~~ 200 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSR 200 (390)
T ss_pred HHHHHHhhhhhcccccc
Confidence 33448888887665444
No 155
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=36.96 E-value=74 Score=21.06 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le 183 (448)
.|.+|+..|.+|.+.+.=|+..|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554443
No 156
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.95 E-value=1.1e+02 Score=32.28 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 013164 330 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 368 (448)
Q Consensus 330 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 368 (448)
+.+...|-.++.-..+++.. +.|||++
T Consensus 345 e~s~~~~e~~l~~~~~il~~------------LgLpyrv 371 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTE------------LGLHFRV 371 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 37777777777666666643 6778886
No 157
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.84 E-value=63 Score=22.41 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le~e~~~l 189 (448)
=+.|.++.++-+.||..|+.+-.+|
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555555555555555544444
No 158
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.39 E-value=38 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
..|+.+...|..++++|..+...+.+++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666655555543
No 159
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.94 E-value=42 Score=32.50 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=3.0
Q ss_pred ccCCCCC
Q 013164 255 FRLGRLP 261 (448)
Q Consensus 255 lRLGrlp 261 (448)
+|.+-.|
T Consensus 122 ~~V~Vsp 128 (251)
T 3m9b_A 122 MRLTCSP 128 (251)
T ss_dssp CEECBCT
T ss_pred EEEEeCC
Confidence 4444444
No 160
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.52 E-value=73 Score=23.54 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQ 171 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e 171 (448)
+..|...|+.+-..|.++++++.++
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 161
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.31 E-value=4.4e+02 Score=28.11 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 210 HQEERDAISSKIEVSQAH 227 (448)
Q Consensus 210 ~~~e~~sl~~q~~~~~~~ 227 (448)
|+++...+.++++..+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444555555555555444
No 162
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.10 E-value=1.2e+02 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
..-.++|+.+|++.......|+.|
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444433
No 163
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.96 E-value=4.1e+02 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
.+-|-++-+.++++++.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 444445555566666666666666654
No 164
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.91 E-value=67 Score=25.88 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
+..|+.++..+..+++.|..+...|.++|..|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577777777777777777777777776665
No 165
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=34.87 E-value=18 Score=24.83 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred hHHHHHHHhhHHHHHHHH
Q 013164 389 TKALKYTLCNLKWALFWF 406 (448)
Q Consensus 389 TkAlK~lLtNlKwllaw~ 406 (448)
..|+|||||-+.++-+-.
T Consensus 5 ~LALKYLLTPv~~l~a~~ 22 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGY 22 (36)
T ss_pred HHHHHHHhhhHHHHhccc
Confidence 469999999999886543
No 166
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.81 E-value=2.3e+02 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEA 129 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~ 129 (448)
.+.|+++-++...|+..|..
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766653
No 167
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=34.69 E-value=2.2e+02 Score=25.08 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 013164 204 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 246 (448)
Q Consensus 204 q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktN-v~nd~F~I~hd 246 (448)
+.+...+...+.....++..|....++|+|-+ -+=-+|++-|.
T Consensus 44 E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 44 ENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 33444455566677788999999999999873 22234444443
No 168
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.28 E-value=2.5e+02 Score=24.88 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 230 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~ 230 (448)
..|.+.++.+.++.++...||.-.-.-+.+-..-=.+.-+--+.+|.++..+..|..++...++-+...|.+
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
No 169
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=34.17 E-value=65 Score=21.32 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013164 168 TEKQNAEVNA 177 (448)
Q Consensus 168 lE~e~~~l~~ 177 (448)
||+|.++.++
T Consensus 6 lekevaqaea 15 (33)
T 1fmh_A 6 LEKEVAQAEA 15 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 170
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=33.84 E-value=1.7e+02 Score=23.01 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 194 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~ 194 (448)
.|...+..+.+|++++...++.++.+...+.++|.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~ 37 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777776664443
No 171
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=32.98 E-value=2.9e+02 Score=25.28 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013164 112 KLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 112 ~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
.++..+..+++-++.|....+.+
T Consensus 130 ~~~~~~~~l~Kak~~Y~~~c~e~ 152 (276)
T 2v0o_A 130 TIQSITQALQKSKENYNAKCVEQ 152 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555444433
No 172
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.89 E-value=2.9e+02 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=12.5
Q ss_pred HHHHHhhcccCCC----ceeeeecCCee
Q 013164 227 HLELLKRTNVLND----AFPIWHDGEFG 250 (448)
Q Consensus 227 ~Ld~L~ktNv~nd----~F~I~hdG~fG 250 (448)
+|-=|+=.|++++ .|.+..-|.=|
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG 107 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSG 107 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCC
Confidence 4555666677765 34444444444
No 173
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.50 E-value=79 Score=24.70 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
...+.+||.+....+++|..|+.++.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777776655444
No 174
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=31.82 E-value=1.4e+02 Score=30.21 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 113 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--ADFLKEKLKIEEEERKLEAAIEET 168 (448)
Q Consensus 113 Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~e--e~l~~e~~~Le~EE~~L~~eL~~l 168 (448)
++.+++++++||+.-..-|+..+.......++ .+.....+.|.+.+..|.+||..+
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l 71 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL 71 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998876422100011 112223334555555555555443
No 175
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=31.80 E-value=4.3e+02 Score=26.96 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=7.6
Q ss_pred eccccCCCCCCCCCChHHHHHH
Q 013164 252 INNFRLGRLPKIPVEWDEINAA 273 (448)
Q Consensus 252 INGlRLGrlp~~~V~W~EINAA 273 (448)
|+..+-|.-| .++...|-+..
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~ 307 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSAD 307 (486)
T ss_dssp HHHHSTTSCC-CCCCC------
T ss_pred HHHhCCCCCC-CCCCceeCCch
Confidence 4555556444 35555555443
No 176
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.26 E-value=4.7e+02 Score=27.26 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 013164 11 QRPQSHGVPPRPRGSSAQ 28 (448)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (448)
.+.++.+.|.||.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (464)
T 1m1j_B 24 DKRQEAAPTLRPVAPPIS 41 (464)
T ss_dssp ------------------
T ss_pred ccccccCCCCCCCCCCcC
Confidence 344445445555444443
No 177
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.19 E-value=2.4e+02 Score=23.77 Aligned_cols=16 Identities=31% Similarity=0.246 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNA 177 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~ 177 (448)
.-.|+++|...+++.+
T Consensus 36 KD~LEe~eE~~aql~R 51 (103)
T 4h22_A 36 KDMLLELEEQLAESRR 51 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334433333333
No 178
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.69 E-value=1.6e+02 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 150 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 150 e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
.+.+|++--..|...+.+||..+.++++|+..|.+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34566666777888888888888888887777654
No 179
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.47 E-value=1.1e+02 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQ 171 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e 171 (448)
+++...+.++-.|..+-+++|.++.+.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 180
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.35 E-value=2.6e+02 Score=24.00 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=6.6
Q ss_pred HHHHHhhcccC
Q 013164 227 HLELLKRTNVL 237 (448)
Q Consensus 227 ~Ld~L~ktNv~ 237 (448)
.+.+|+--|+-
T Consensus 103 ~ik~lr~gn~~ 113 (119)
T 3etw_A 103 KIQALRAGNLE 113 (119)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHcCCcc
Confidence 56677766653
No 181
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.34 E-value=2.6e+02 Score=23.94 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 013164 121 TRDIEAYE 128 (448)
Q Consensus 121 ~~E~~~Y~ 128 (448)
.+|+..|.
T Consensus 62 L~eIk~~l 69 (142)
T 3gp4_A 62 IEALIDYL 69 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 182
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.27 E-value=1.7e+02 Score=28.30 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 201 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~-e~n 201 (448)
.++++...++..++.++++++.++++++.+++....-++.+ ..|. .++
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 34455556666777777777777777777777663333333 2455 443
No 183
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.16 E-value=2.3e+02 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELELKSKR 188 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le~e~~~ 188 (448)
...||.+...+..++..|..|...
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 184
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=30.15 E-value=5.1e+02 Score=27.24 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 013164 221 IEVSQAHLELLKRTNVLND 239 (448)
Q Consensus 221 ~~~~~~~Ld~L~ktNv~nd 239 (448)
|+..+.||+.+..+|+++.
T Consensus 179 Ye~~QKqLeQv~a~dL~p~ 197 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMHPD 197 (491)
T ss_dssp THHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhhccccCCc
Confidence 4556789999999999874
No 185
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.97 E-value=49 Score=33.90 Aligned_cols=92 Identities=14% Similarity=0.274 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 225 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 225 (448)
++..++..+.++.+++..++++|+.++.++.++|.++....++. ++...+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34566777888888888999999998888888887653221100 1122333334444444444444444443322
Q ss_pred HHHHHHhhcccCCCceeeeec
Q 013164 226 AHLELLKRTNVLNDAFPIWHD 246 (448)
Q Consensus 226 ~~Ld~L~ktNv~nd~F~I~hd 246 (448)
.|+=-|+.++.=+++.|
T Consensus 102 ----~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVGED 118 (425)
T ss_dssp ----HHTSCCCCCTTSCCCSS
T ss_pred ----HHhCCCCCCCCCCCCCC
Confidence 23445777766666544
No 186
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.91 E-value=2.2e+02 Score=29.84 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 013164 332 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 369 (448)
Q Consensus 332 AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 369 (448)
+...|-.++.-..+++.. +.|||++-
T Consensus 335 s~~e~e~~~~~~e~il~~------------LGLpyrvv 360 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKS------------LGLPYRVV 360 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 666666665555555542 57788773
No 187
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.90 E-value=81 Score=32.38 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.2
Q ss_pred CCChHHH
Q 013164 264 PVEWDEI 270 (448)
Q Consensus 264 ~V~W~EI 270 (448)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4889876
No 188
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=29.72 E-value=3.5e+02 Score=25.19 Aligned_cols=57 Identities=11% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Q 013164 155 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQ 211 (448)
Q Consensus 155 e~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~-~eE~~~w~e~n~~q~ql~~~~ 211 (448)
+.+-..|.++.+.++.+..++.++++++-....+++ ++=.+|-.-.|+-+..+.+++
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444555555555555555443333332 222356666666666665544
No 189
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.63 E-value=1.3e+02 Score=23.68 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
+..|.+.+...|..+|.+..++.+++...-.|.+.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.40 E-value=2.4e+02 Score=24.26 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 148 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 148 ~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.+...-++.-.+.+...++.+++..+.+.+++..++....++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666666665554444
No 191
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.91 E-value=95 Score=22.08 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNA 177 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~ 177 (448)
|+.||..||+..+.+..
T Consensus 25 leselqalekklaalks 41 (48)
T 1g6u_A 25 LESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 192
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.84 E-value=3.1e+02 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=7.5
Q ss_pred HHHHHHHHhhcccCCC
Q 013164 224 SQAHLELLKRTNVLND 239 (448)
Q Consensus 224 ~~~~Ld~L~ktNv~nd 239 (448)
....+.+|..-|-+.+
T Consensus 99 LeAE~aKLeEekQIse 114 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISD 114 (146)
T ss_dssp HHHHHHHHGGGTTTC-
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3344555555554443
No 193
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.26 E-value=1.8e+02 Score=21.42 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
|..++..|....++|.+.|++...++..|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 194
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=28.13 E-value=1.2e+02 Score=28.99 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 154 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 154 (448)
++.|++|-..++...+.|..-|....+.. ++.++.+++.+++..+
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~ 90 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAF 90 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 44455555555666666776666554432 3345555655444433
No 195
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=28.00 E-value=3.2e+02 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 145 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 145 e~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
+.+.+....|....+.|..++..++++...+..+|+.+-
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777777777777777777777776653
No 196
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.95 E-value=2.8e+02 Score=23.58 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACL 131 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL 131 (448)
.+|+.+++.+.++++.-..|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w 36 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFI 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 197
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.07 E-value=1.9e+02 Score=21.30 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 151 KLKIEEEERKLEAAIEETEKQNAEVNAELK 180 (448)
Q Consensus 151 ~~~Le~EE~~L~~eL~~lE~e~~~l~~el~ 180 (448)
+..|...-.+|...|.+.-.+...+.+++.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434444444444444444444444433
No 198
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.07 E-value=84 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 159 RKLEAAIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 159 ~~L~~eL~~lE~e~~~l~~el~~le~ 184 (448)
..|..+++.|+.+...|..++..|..
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 199
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.99 E-value=2.4e+02 Score=23.39 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 119 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 198 (448)
Q Consensus 119 ~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~ 198 (448)
++++|.+.+...|...-.... ..|+.|.++|.++|..||.--... +.|..+..-|+.+=+.|-.
T Consensus 29 QVQqELs~tfarLc~~Vd~t~------------~eL~~EI~~L~~eI~~LE~iqs~a----K~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQ------------KHLEEEIARLSKEIDQLEKMQNNS----KLLRNKAVQLESELENFSK 92 (96)
T ss_dssp ------CCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 013164 199 EF 200 (448)
Q Consensus 199 e~ 200 (448)
.|
T Consensus 93 ~y 94 (96)
T 1t3j_A 93 QF 94 (96)
T ss_dssp HH
T ss_pred Hh
No 200
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.54 E-value=3.4e+02 Score=24.10 Aligned_cols=23 Identities=4% Similarity=0.062 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 013164 212 EERDAISSKIEVSQAHLELLKRT 234 (448)
Q Consensus 212 ~e~~sl~~q~~~~~~~Ld~L~kt 234 (448)
.++.....+......+++.+.+.
T Consensus 84 ~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 84 GKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444445555555555543
No 201
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.27 E-value=63 Score=24.21 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQN 172 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~ 172 (448)
|+.+-..|..++..|..+.
T Consensus 34 L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333443333333
No 202
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.24 E-value=1.1e+02 Score=25.48 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=10.3
Q ss_pred HHhhcccCCCceeeeecCCeee
Q 013164 230 LLKRTNVLNDAFPIWHDGEFGT 251 (448)
Q Consensus 230 ~L~ktNv~nd~F~I~hdG~fGT 251 (448)
-|++...|.+---|-...|-||
T Consensus 55 Di~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 55 DLRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHHTTSCTTTEEEEEEECCTTC
T ss_pred HHhcCcCCCcCeEEEEECCCCC
Confidence 3444444554444544555444
No 203
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.97 E-value=1.8e+02 Score=20.66 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELEL 184 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~ 184 (448)
||..||.|...++..+..++.
T Consensus 21 elaaleselqalekklaalks 41 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 204
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.77 E-value=1.3e+02 Score=30.05 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.0
Q ss_pred ceeeeecCC
Q 013164 295 RIKIIPMGS 303 (448)
Q Consensus 295 ~y~LvPmGS 303 (448)
-|.|.|-|+
T Consensus 89 vY~I~p~~~ 97 (323)
T 1lwu_C 89 LYYIKPLKA 97 (323)
T ss_dssp EEEECCTTC
T ss_pred EEEEecCCC
Confidence 377778763
No 205
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.57 E-value=5.5e+02 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 205 FQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 205 ~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.++..++....++..+++..+.++..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666654
No 206
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.53 E-value=87 Score=32.01 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+.+++ |+.+...+..+.+..+.--+.+.+
T Consensus 30 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 30 DKVLE-LDKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 666666666666666655555544
No 207
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.14 E-value=46 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 192 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~e 192 (448)
+...+..+...-.-+..=|.+-|...+.+..+++-|+.|+.+++..
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333444556666677777777777777777776543
No 208
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.05 E-value=3.6e+02 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEK 170 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~ 170 (448)
..++.+..+|..+...++.
T Consensus 36 ~~le~e~~kl~~e~~i~ea 54 (146)
T 2xnx_M 36 LEKELEEKKKALELAIDQA 54 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 209
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.88 E-value=2.8e+02 Score=22.61 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 108 VLSDKLDKEVDDVTRDIE 125 (448)
Q Consensus 108 ~Lle~Ld~qle~~~~E~~ 125 (448)
.|.+.++.+|..+..++.
T Consensus 15 elFe~YE~df~~l~~~i~ 32 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQ 32 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777776655553
No 210
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.82 E-value=3.3e+02 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 141 VLSEADFLKEKLKIEEEERKLEAAIEETEKQN 172 (448)
Q Consensus 141 ~~~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~ 172 (448)
.++-++|++|+...|.+.-...+.|++.++..
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~ 52 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQKVRDAEKQY 52 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666665555555554445544444433
No 211
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.78 E-value=3e+02 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 111 DKLDKEVDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 111 e~Ld~qle~~~~E~~~Y~~fL~~L 134 (448)
+.+..++..++.+...+..-+++|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334555555555555544444444
No 212
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=24.66 E-value=86 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
-+..|+..++.+++||+-|-.-|+.++
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 213
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=23.99 E-value=4.2e+02 Score=24.28 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 110 SDKLDKEVDDVTRDIEAYE 128 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~ 128 (448)
.+.|+++-++...|+..|.
T Consensus 28 ~e~L~~E~e~k~eEKkkiL 46 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRAL 46 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666654
No 214
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=23.77 E-value=2e+02 Score=28.65 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccCCHHHHHHHHHHH
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 154 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 154 (448)
+.=++.|++|-..++...+.|..-|....+.. ++.++.+++..++.++
T Consensus 24 ~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 24 EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 33455666666667777777777776554332 3445566665554444
No 215
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.15 E-value=42 Score=21.53 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 168 TEKQNAEVNAELKELELKS 186 (448)
Q Consensus 168 lE~e~~~l~~el~~le~e~ 186 (448)
||=|...+++.+..|+.++
T Consensus 5 lefendaleqkiaalkqki 23 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 216
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.13 E-value=1.6e+02 Score=23.43 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 147 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 176 (448)
Q Consensus 147 l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~ 176 (448)
+......|+.|-..|..++..|++|...+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666666555555443
No 217
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.46 E-value=4.1e+02 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 146 DFLKEKLKIEEEERKLEAAIEETEK 170 (448)
Q Consensus 146 ~l~~e~~~Le~EE~~L~~eL~~lE~ 170 (448)
+|.++..+|+.+|+++..+|+.+-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655443
No 218
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=22.43 E-value=4.8e+02 Score=24.35 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 144 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 183 (448)
Q Consensus 144 ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~le 183 (448)
.+.+.+....|..+.+.|..++..|+++...+..+|+..-
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaa 48 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888888888888888888888887764
No 219
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.32 E-value=3.8e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013164 195 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 233 (448)
Q Consensus 195 ~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~k 233 (448)
.+=+..+.++.....++.++..++..+.....+.++++.
T Consensus 53 ~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 53 IIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555566666666666666665555544
No 220
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.18 E-value=52 Score=32.81 Aligned_cols=12 Identities=17% Similarity=0.662 Sum_probs=7.5
Q ss_pred ChHHHHHHHHHH
Q 013164 266 EWDEINAAWGQA 277 (448)
Q Consensus 266 ~W~EINAAwGQ~ 277 (448)
.|.|-=.+.|.+
T Consensus 120 ~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 120 NWIQYKEGFGHL 131 (319)
T ss_dssp CHHHHHHCEEEE
T ss_pred CHHHHhHhhCCc
Confidence 566666666654
No 221
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.54 E-value=2.3e+02 Score=20.37 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013164 155 EEEERKL 161 (448)
Q Consensus 155 e~EE~~L 161 (448)
|..|..|
T Consensus 23 erdeqnl 29 (52)
T 3he5_B 23 ERDEQNL 29 (52)
T ss_dssp HHHHHHH
T ss_pred hhhHhhH
Confidence 3333333
No 222
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.16 E-value=3.3e+02 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 164 AIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 164 eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.|.+++...++...=|..++.|...+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444555555555455555554444
No 223
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=21.15 E-value=4.7e+02 Score=23.77 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 013164 105 CMRVLSDKLDK 115 (448)
Q Consensus 105 C~d~Lle~Ld~ 115 (448)
|...+.+.++.
T Consensus 109 ~~~~~~~~~~~ 119 (251)
T 2fic_A 109 EANKIAENNDL 119 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33334444443
No 224
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.13 E-value=2.4e+02 Score=22.02 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 153 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 153 ~Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
+|..+-..|..+|..+|..-.-.. ++..|+.+...|.
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LK 57 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLK 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhH
Confidence 344444555555555544332222 4444444444443
No 225
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.98 E-value=3.5e+02 Score=22.23 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 105 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 105 C~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
|...-++.|+++++...+.++.-..-.+-...
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445677888888888887776666655543
No 226
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.74 E-value=1e+02 Score=24.17 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
|..+...++.+.+++..+...|+.+
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 227
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.60 E-value=3.3e+02 Score=21.77 Aligned_cols=38 Identities=8% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 160 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 197 (448)
Q Consensus 160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w 197 (448)
+|...|+.+..|...|.-+++.+.-+...+.+.-+.++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666665555555555555544433333
No 228
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.35 E-value=1.7e+02 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 162 EAAIEETEKQNAEVNAELKELELKSKRF 189 (448)
Q Consensus 162 ~~eL~~lE~e~~~l~~el~~le~e~~~l 189 (448)
.+.+.+||.+.+.|..+-..|..+...|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444
No 229
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.34 E-value=3.9e+02 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~l 182 (448)
|.=+++-|....+++++.+..+
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql 49 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAES 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 230
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=20.26 E-value=1.9e+02 Score=22.55 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELE 183 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le 183 (448)
+..|..+...|+.+|..++
T Consensus 19 f~~L~~eH~~LD~~I~~le 37 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKTAE 37 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444445555555554444
No 231
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.05 E-value=2.9e+02 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013164 215 DAISSKIEVSQAHLELLK 232 (448)
Q Consensus 215 ~sl~~q~~~~~~~Ld~L~ 232 (448)
..+..+++..+.+|+.|+
T Consensus 59 ~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 59 TEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333344444444444443
No 232
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.01 E-value=2.9e+02 Score=21.93 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 169 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 169 E~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
..|.+.+..+...|+.. +.+.|.+|=.+...++..+..++.++..+.+.+..-......|
T Consensus 2 ~~eie~L~~q~~~Le~~---l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~L 61 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAK---LRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 61 (86)
T ss_dssp ----------CTTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!