Query 013164
Match_columns 448
No_of_seqs 153 out of 247
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013164.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013164hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 72.6 27 0.002 29.7 16.3 8 341-348 263-270 (288)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 68.0 12 0.00087 29.0 8.5 32 154-185 70-101 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 66.4 25 0.0018 27.0 10.7 34 149-182 28-61 (110)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 61.6 23 0.0017 27.9 9.3 27 109-135 16-42 (133)
5 d1seta1 a.2.7.1 (A:1-110) Sery 60.2 33 0.0024 26.2 10.8 29 107-136 28-56 (110)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 53.1 44 0.0032 25.5 10.8 21 211-231 78-98 (107)
7 d2azeb1 e.63.1.2 (B:201-301) T 48.4 14 0.001 28.9 5.6 30 161-190 6-35 (101)
8 d1qvra2 c.37.1.20 (A:149-535) 48.0 31 0.0022 32.6 9.1 23 96-119 180-202 (387)
9 d2efka1 a.238.1.4 (A:10-288) C 47.0 77 0.0056 26.5 16.5 7 342-348 255-261 (279)
10 d1wu9a1 a.245.1.1 (A:191-249) 35.6 22 0.0016 25.3 4.4 26 110-135 10-35 (59)
11 d1ivsa1 a.2.7.3 (A:797-862) Va 33.6 46 0.0034 23.3 6.0 8 162-169 10-17 (66)
12 d1nkpa_ a.38.1.1 (A:) Myc prot 32.1 38 0.0027 25.0 5.5 30 152-181 55-84 (88)
13 d2azeb1 e.63.1.2 (B:201-301) T 31.7 39 0.0028 26.2 5.7 17 175-191 6-22 (101)
14 d1lrza1 a.2.7.4 (A:245-309) Me 29.5 91 0.0066 22.2 9.0 9 174-182 41-49 (65)
15 d2efka1 a.238.1.4 (A:10-288) C 29.5 1.5E+02 0.011 24.6 15.9 27 110-136 90-116 (279)
16 d1ykhb1 a.252.1.1 (B:2-130) RN 28.1 1.4E+02 0.0099 23.8 9.9 31 143-173 85-115 (129)
17 d1ivsa1 a.2.7.3 (A:797-862) Va 26.0 97 0.0071 21.4 7.5 22 114-135 3-24 (66)
18 d2efla1 a.238.1.4 (A:1-288) Fo 23.8 1.9E+02 0.014 23.9 16.9 18 117-134 106-123 (288)
19 d1nkpb_ a.38.1.1 (B:) Max prot 22.5 44 0.0032 24.3 4.2 30 152-181 50-79 (83)
20 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.5 1.6E+02 0.012 22.4 13.9 29 203-231 100-128 (133)
21 d1bjta_ e.11.1.1 (A:) DNA topo 21.1 74 0.0054 32.6 7.1 19 165-183 711-729 (760)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.58 E-value=27 Score=29.75 Aligned_cols=8 Identities=13% Similarity=-0.002 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 013164 341 KDFAEFAN 348 (448)
Q Consensus 341 ~q~~~~~~ 348 (448)
.++..|++
T Consensus 263 ~D~~~fi~ 270 (288)
T d2efla1 263 NDSQLVIE 270 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444554
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=68.03 E-value=12 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 154 IEEEERKLEAAIEETEKQNAEVNAELKELELK 185 (448)
Q Consensus 154 Le~EE~~L~~eL~~lE~e~~~l~~el~~le~e 185 (448)
|.+..+.+..+++.++++...+..++.+++.+
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555554443
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=66.38 E-value=25 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 149 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 182 (448)
Q Consensus 149 ~e~~~Le~EE~~L~~eL~~lE~e~~~l~~el~~l 182 (448)
.++.++.++.+.+..+++.|..++..+..++...
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~ 61 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKA 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888888888777644
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.62 E-value=23 Score=27.90 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 109 LSDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 109 Lle~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
-++.|+.+++.++.....|....+.|+
T Consensus 16 ~l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 16 QVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665555443
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=60.15 E-value=33 Score=26.24 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 107 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 107 d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
+.+++ |+.+...+..+.+..+.--+.+.+
T Consensus 28 d~i~~-ld~~rr~l~~~~e~l~~~rN~~sk 56 (110)
T d1seta1 28 EALLA-LDREVQELKKRLQEVQTERNQVAK 56 (110)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 666666666666655555555443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=53.12 E-value=44 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013164 211 QEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 211 ~~e~~sl~~q~~~~~~~Ld~L 231 (448)
..+...+..++.....+++.+
T Consensus 78 ~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 78 QLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.36 E-value=14 Score=28.90 Aligned_cols=30 Identities=3% Similarity=0.145 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 161 LEAAIEETEKQNAEVNAELKELELKSKRFK 190 (448)
Q Consensus 161 L~~eL~~lE~e~~~l~~el~~le~e~~~l~ 190 (448)
|.+||+.|+.+..+|++.+..++.++..+.
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555444443
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=47.98 E-value=31 Score=32.56 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=14.3
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHH
Q 013164 96 QVEQPLCLECMRVLSDKLDKEVDD 119 (448)
Q Consensus 96 ~iDhPLC~eC~d~Lle~Ld~qle~ 119 (448)
.|+-|-=.+|...| ..+...++.
T Consensus 180 ~v~ep~~~~~~~il-~~~~~~~e~ 202 (387)
T d1qvra2 180 YVDEPTVEETISIL-RGLKEKYEV 202 (387)
T ss_dssp EECCCCHHHHHHHH-HHHHHHHHH
T ss_pred cCCCCcHHHHHHHH-HHHHHHHHh
Confidence 56667666766664 456666654
No 9
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.96 E-value=77 Score=26.52 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=3.4
Q ss_pred HHHHHHh
Q 013164 342 DFAEFAN 348 (448)
Q Consensus 342 q~~~~~~ 348 (448)
++..|+.
T Consensus 255 D~~~f~~ 261 (279)
T d2efka1 255 DSHVLIE 261 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444554
No 10
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.60 E-value=22 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~ 135 (448)
+..|+..++.+++|||-|-.-|..++
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999988775
No 11
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=33.62 E-value=46 Score=23.26 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 013164 162 EAAIEETE 169 (448)
Q Consensus 162 ~~eL~~lE 169 (448)
.++|..++
T Consensus 10 ~K~l~kl~ 17 (66)
T d1ivsa1 10 EKRLKELL 17 (66)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 12
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.05 E-value=38 Score=24.98 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
..|+++...+..+++.+.++.+.+.+++..
T Consensus 55 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554443
No 13
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.70 E-value=39 Score=26.24 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013164 175 VNAELKELELKSKRFKE 191 (448)
Q Consensus 175 l~~el~~le~e~~~l~~ 191 (448)
|.+|+.+|+.+..+|++
T Consensus 6 L~~El~~L~~~E~~LD~ 22 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDH 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 14
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=29.52 E-value=91 Score=22.21 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013164 174 EVNAELKEL 182 (448)
Q Consensus 174 ~l~~el~~l 182 (448)
++.+++...
T Consensus 41 el~~Q~~s~ 49 (65)
T d1lrza1 41 NLQQQLDAN 49 (65)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 15
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.51 E-value=1.5e+02 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013164 110 SDKLDKEVDDVTRDIEAYEACLQRLEG 136 (448)
Q Consensus 110 le~Ld~qle~~~~E~~~Y~~fL~~L~~ 136 (448)
++.|..-..+.++.++.+....+++.+
T Consensus 90 ~~~l~~~~~~~~~~~k~~~~~~~~~~k 116 (279)
T d2efka1 90 CLELTKYSQEMKQERKMHFQEGRRAQQ 116 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555443
No 16
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.05 E-value=1.4e+02 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 143 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 173 (448)
Q Consensus 143 ~ee~l~~e~~~Le~EE~~L~~eL~~lE~e~~ 173 (448)
++++-.+.+.+|++|-....+++++.-++.+
T Consensus 85 see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 85 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544444444444333
No 17
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=25.96 E-value=97 Score=21.40 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013164 114 DKEVDDVTRDIEAYEACLQRLE 135 (448)
Q Consensus 114 d~qle~~~~E~~~Y~~fL~~L~ 135 (448)
+.+...++++.+.+...+.+++
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544443
No 18
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.79 E-value=1.9e+02 Score=23.92 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013164 117 VDDVTRDIEAYEACLQRL 134 (448)
Q Consensus 117 le~~~~E~~~Y~~fL~~L 134 (448)
..+.++.++.+.....++
T Consensus 106 ~~~~~~~~K~~~~~~~k~ 123 (288)
T d2efla1 106 VQELKQERKSNFHDGRKA 123 (288)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 19
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.50 E-value=44 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 152 LKIEEEERKLEAAIEETEKQNAEVNAELKE 181 (448)
Q Consensus 152 ~~Le~EE~~L~~eL~~lE~e~~~l~~el~~ 181 (448)
..|..+...+..+++.+.++...+..++..
T Consensus 50 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555555443
No 20
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.51 E-value=1.6e+02 Score=22.41 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013164 203 FQFQLIAHQEERDAISSKIEVSQAHLELL 231 (448)
Q Consensus 203 ~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L 231 (448)
++..+..+.++...+..++......+++|
T Consensus 100 l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 100 LESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555444
No 21
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.10 E-value=74 Score=32.56 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013164 165 IEETEKQNAEVNAELKELE 183 (448)
Q Consensus 165 L~~lE~e~~~l~~el~~le 183 (448)
+++|++|.+++.+|+++|+
T Consensus 711 i~kL~~E~~~l~~Ei~~L~ 729 (760)
T d1bjta_ 711 YQKLLKQKQEKETELENLL 729 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
Done!