Query 013165
Match_columns 448
No_of_seqs 170 out of 1389
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 5E-133 1E-137 959.5 30.1 430 1-430 1-433 (443)
2 PLN00221 tubulin alpha chain; 100.0 1E-111 3E-116 873.2 33.9 431 1-431 1-441 (450)
3 PTZ00335 tubulin alpha chain; 100.0 2E-110 5E-115 863.2 33.6 428 1-428 1-438 (448)
4 PTZ00010 tubulin beta chain; P 100.0 6E-110 1E-114 861.3 33.5 431 1-431 1-431 (445)
5 PLN00220 tubulin beta chain; P 100.0 2E-109 5E-114 859.1 33.9 440 1-440 1-441 (447)
6 PLN00222 tubulin gamma chain; 100.0 6E-107 1E-111 838.4 33.2 425 1-426 2-442 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 7E-107 1E-111 833.8 30.9 420 2-422 1-431 (431)
8 cd02187 beta_tubulin The tubul 100.0 2E-106 4E-111 832.0 32.9 424 2-425 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 3E-106 6E-111 832.1 31.5 423 2-424 1-433 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 1E-105 2E-110 829.4 33.1 417 1-428 1-452 (465)
11 KOG1374 Gamma tubulin [Cytoske 100.0 3E-102 6E-107 748.0 27.7 424 1-425 2-439 (448)
12 cd02190 epsilon_tubulin The tu 100.0 2.9E-98 6E-103 760.2 29.6 378 2-424 1-378 (379)
13 cd02189 delta_tubulin The tubu 100.0 4.1E-98 9E-103 773.9 31.3 410 4-423 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 4.7E-90 1E-94 704.1 30.4 381 3-424 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 5.9E-88 1.3E-92 647.4 16.0 404 1-419 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 5.9E-68 1.3E-72 511.9 16.1 353 41-433 5-358 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 1E-64 2.2E-69 508.5 24.9 327 3-371 1-328 (328)
18 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.1E-51 2.4E-56 390.4 8.3 215 3-223 1-215 (216)
19 cd06060 misato Human Misato sh 100.0 9.8E-49 2.1E-53 405.4 29.1 407 2-424 1-493 (493)
20 smart00864 Tubulin Tubulin/Fts 100.0 3.9E-37 8.5E-42 285.8 8.9 185 49-244 3-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 6.6E-33 1.4E-37 278.8 15.0 219 1-260 1-226 (349)
22 KOG2530 Members of tubulin/Fts 100.0 2.8E-31 6.1E-36 262.1 11.1 239 1-255 1-324 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 3.6E-28 7.8E-33 240.0 14.0 202 1-258 1-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 4.2E-26 9.1E-31 228.8 13.3 200 4-258 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 1.5E-25 3.3E-30 222.2 13.1 202 4-259 3-209 (304)
26 PRK13018 cell division protein 99.9 1.2E-24 2.5E-29 219.2 13.5 205 4-258 31-235 (378)
27 PF03953 Tubulin_C: Tubulin C- 99.9 2.1E-23 4.5E-28 180.7 9.1 123 261-383 1-126 (126)
28 PRK09330 cell division protein 99.9 1.1E-22 2.3E-27 205.2 12.1 202 3-258 15-221 (384)
29 PF14881 Tubulin_3: Tubulin do 99.8 1.9E-20 4.1E-25 171.2 12.1 154 77-242 12-180 (180)
30 COG0206 FtsZ Cell division GTP 99.5 5.9E-14 1.3E-18 139.1 12.4 206 4-259 14-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 99.4 5.4E-14 1.2E-18 119.5 3.6 65 2-72 1-69 (115)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.3E-07 2.9E-12 80.2 2.4 114 246-382 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.7 0.00053 1.1E-08 69.6 13.9 103 93-196 101-221 (345)
34 PLN02847 triacylglycerol lipas 70.5 4.7 0.0001 43.6 3.9 63 102-168 223-287 (633)
35 PF03610 EIIA-man: PTS system 68.7 7.5 0.00016 32.6 4.1 34 111-144 38-71 (116)
36 cd00741 Lipase Lipase. Lipase 66.9 8.7 0.00019 33.6 4.4 62 104-169 2-63 (153)
37 PRK14484 phosphotransferase ma 65.4 5.7 0.00012 34.1 2.7 30 113-144 41-70 (124)
38 cd00519 Lipase_3 Lipase (class 61.0 10 0.00022 35.6 3.9 74 100-178 98-171 (229)
39 PF12953 DUF3842: Domain of un 60.9 9.6 0.00021 32.9 3.2 43 142-198 7-50 (131)
40 TIGR00824 EIIA-man PTS system, 60.2 18 0.00039 30.5 4.9 35 113-147 41-75 (116)
41 cd00006 PTS_IIA_man PTS_IIA, P 60.1 20 0.00043 30.3 5.2 32 113-144 40-71 (122)
42 PF06908 DUF1273: Protein of u 59.8 28 0.0006 31.9 6.3 109 112-239 27-136 (177)
43 PF01764 Lipase_3: Lipase (cla 53.7 8.9 0.00019 32.7 2.0 56 102-161 35-91 (140)
44 PRK09461 ansA cytoplasmic aspa 50.1 46 0.001 33.6 6.7 95 108-209 63-157 (335)
45 TIGR02153 gatD_arch glutamyl-t 42.2 91 0.002 32.4 7.6 92 108-205 120-211 (404)
46 COG0572 Udk Uridine kinase [Nu 41.2 28 0.00062 32.9 3.4 27 135-162 9-35 (218)
47 cd00411 Asparaginase Asparagin 40.5 81 0.0018 31.7 6.8 94 108-209 60-155 (323)
48 PF00710 Asparaginase: Asparag 40.1 79 0.0017 31.6 6.6 95 108-209 54-148 (313)
49 TIGR02364 dha_pts dihydroxyace 40.0 28 0.0006 29.9 2.9 42 113-157 41-84 (125)
50 PLN02408 phospholipase A1 38.2 61 0.0013 33.2 5.4 64 111-178 179-244 (365)
51 PRK13660 hypothetical protein; 35.6 1.5E+02 0.0032 27.3 7.1 110 112-239 27-136 (182)
52 PRK04183 glutamyl-tRNA(Gln) am 35.1 1.1E+02 0.0024 31.9 6.9 91 108-205 133-223 (419)
53 TIGR00519 asnASE_I L-asparagin 32.5 1E+02 0.0022 31.1 6.1 96 108-210 59-159 (336)
54 PTZ00489 glutamate 5-kinase; P 31.9 1.9E+02 0.0041 28.2 7.6 49 155-205 87-135 (264)
55 PF01713 Smr: Smr domain; Int 31.6 1.6E+02 0.0034 22.8 5.8 55 114-171 9-69 (83)
56 smart00870 Asparaginase Aspara 30.7 1.4E+02 0.0031 29.9 6.7 96 109-209 58-155 (323)
57 PF09370 TIM-br_sig_trns: TIM- 30.2 27 0.00059 34.0 1.3 32 115-154 2-33 (268)
58 COG2893 ManX Phosphotransferas 29.8 1.1E+02 0.0024 27.0 5.0 54 109-166 38-91 (143)
59 PRK15088 PTS system mannose-sp 28.9 85 0.0018 31.6 4.7 36 112-147 41-76 (322)
60 PF03283 PAE: Pectinacetyleste 25.0 1.3E+02 0.0028 30.8 5.3 50 105-161 132-183 (361)
61 COG1528 Ftn Ferritin-like prot 24.6 39 0.00085 30.5 1.3 33 374-406 97-131 (167)
62 PF08259 Periviscerokin: Periv 24.2 34 0.00073 16.5 0.4 8 255-262 3-10 (11)
63 KOG4807 F-actin binding protei 22.5 39 0.00085 34.5 0.9 26 121-148 477-502 (593)
64 COG1109 {ManB} Phosphomannomut 22.3 3.1E+02 0.0066 29.0 7.7 91 112-207 158-251 (464)
65 COG0159 TrpA Tryptophan syntha 22.2 2.2E+02 0.0047 27.8 6.0 76 118-213 161-242 (265)
66 COG1929 Glycerate kinase [Carb 22.2 1.3E+02 0.0028 30.7 4.5 82 110-208 216-301 (378)
67 PF13508 Acetyltransf_7: Acety 22.1 1E+02 0.0023 23.1 3.1 22 144-165 40-61 (79)
68 PLN02802 triacylglycerol lipas 21.7 1.6E+02 0.0034 31.5 5.2 64 111-178 309-374 (509)
69 PF06858 NOG1: Nucleolar GTP-b 21.0 2.4E+02 0.0051 20.9 4.5 40 128-167 11-53 (58)
70 smart00467 GS GS motif. Aa app 20.9 69 0.0015 20.4 1.4 13 140-153 11-23 (30)
71 PF02879 PGM_PMM_II: Phosphogl 20.6 46 0.001 27.0 0.9 27 131-157 20-46 (104)
72 cd00598 GH18_chitinase-like Th 20.5 3.2E+02 0.0068 24.7 6.6 89 109-205 85-177 (210)
73 PLN02371 phosphoglucosamine mu 20.5 4.2E+02 0.0092 28.9 8.5 74 129-206 260-337 (583)
74 COG0783 Dps DNA-binding ferrit 20.5 1.7E+02 0.0038 26.1 4.5 32 370-404 12-45 (156)
75 PRK15414 phosphomannomutase Cp 20.1 4.9E+02 0.011 27.3 8.7 94 112-206 151-248 (456)
76 PRK09542 manB phosphomannomuta 20.1 4.1E+02 0.0089 27.8 8.1 90 111-206 144-237 (445)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=5.4e-133 Score=959.53 Aligned_cols=430 Identities=53% Similarity=1.008 Sum_probs=420.5
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
||||||||+||||||||.+||+++|+||||.++|.+....+.+.++.++||+|+..++|+||||+||+||++|+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 99999999999999999999999999999999999776666677899999999999999999999999999999999999
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013165 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (448)
++.+|+|+|++++|+|+|||||+|+|++|+++.|+++|.|||++|.||.||||+++||+|||||||+|+.|+|.|+++||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccc
Q 013165 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||++|+++|.+.+++++|+|.++|++|+++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccccc
Q 013165 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||++|+|+++|.+||||+|++||+.++|+|+++..+..+++.|+.++++++|+|+|||++|+|+.|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhcccCCccccccCCCcceeeeccCC---CCCccceeeecCChhhHHHHHHHHHHHHHhccccccccc
Q 013165 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW 397 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~ 397 (448)
+.++++++.+.+++.|+...|++|+|+++++++|..+| ...+.++|+|+|+|+|.+.|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999 667899999999999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHhhcC
Q 013165 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 430 (448)
Q Consensus 398 Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~ 430 (448)
|.++|||++||.||++++++++++|+++++..+
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~ 433 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSY 433 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999866543
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.2e-111 Score=873.21 Aligned_cols=431 Identities=42% Similarity=0.832 Sum_probs=408.1
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCch--hhhcccccccccCCCCCCcccceeeCCCCCccccccc
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSE--LQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
|||||+||+||||||||.+||+++++||+++++|....+.. ...++.++||+|+.+++|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999999987643322 1345778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
||++.+.+++|+|++..++++++|||++|++++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccc
Q 013165 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||||.++.|++++++||||||++||++++++|+++.....+++++|.+|++++++++++++.++|..|+||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999887667788899999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC--------CCccceeeecCChhhHHHHHHHHHHHHHhcc
Q 013165 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 390 (448)
|++.+.++.+.+.+++.+....|++|+|+++++++|..+|. +.+.++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888999999999999999988764 3457899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 013165 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431 (448)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (448)
||||||||+++||||+||.||+++|++++++|+++++...+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~ 441 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAE 441 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999998766544
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.4e-110 Score=863.20 Aligned_cols=428 Identities=42% Similarity=0.851 Sum_probs=405.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCch--hhhcccccccccCCCCCCcccceeeCCCCCccccccc
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSE--LQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
|||||+||+||||||||.+||+++++||+++++|....+.. ...++.++||+|+.+++|+||+|+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999999987643322 1245778999999999999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++++++|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
||++.+++++|+|+...++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999767899999999999999999999999999999999999999998899999999999999999999
Q ss_pred cccCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccc
Q 013165 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||||.++.|++++.+||||||++||++++++|+.+.....+++.+|.+|++++|+++++++.++|.+++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987667788899999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC--------CCccceeeecCChhhHHHHHHHHHHHHHhcc
Q 013165 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFR 390 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 390 (448)
|++.+.++.+.+.+++.+....|++|+|+++++++|..+|. +...++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888889999999999999999988764 2467899999999999999999999999999
Q ss_pred cccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 013165 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (448)
Q Consensus 391 kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (448)
||||||||+++||||+||.||+++|++++++|+++++.
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~ 438 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998643
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=5.8e-110 Score=861.31 Aligned_cols=431 Identities=90% Similarity=1.436 Sum_probs=412.3
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+.+++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999999987754443334577899999999999999999999999999999888
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013165 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (448)
++.+|++++++.+++|+|||||+||+..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccc
Q 013165 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.+++++|+|+++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccccc
Q 013165 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||++|.|++++.+||||||++||++++++|+.+.....+.++++.+|++++++++++++.++|.+|+|+|+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998776778889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccceeeecCChhhHHHHHHHHHHHHHhcccccccccccC
Q 013165 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (448)
+.+.++.+.+.+++.+..+.|++|+|+++++++|+++|.+.++++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999998888888999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 013165 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATAD 431 (448)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~ 431 (448)
+||||+||.||+++|++++++|+++.+..++
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~ 431 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVE 431 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999998766533
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=2.1e-109 Score=859.09 Aligned_cols=440 Identities=97% Similarity=1.498 Sum_probs=415.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+..+.+.+.++.++||+|..+++|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999999887755444334677899999999999999999999999999999998
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcC
Q 013165 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp 160 (448)
++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+++|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccc
Q 013165 161 DRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (448)
Q Consensus 161 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 240 (448)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccccc
Q 013165 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGK 320 (448)
Q Consensus 241 r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 320 (448)
||||.++.++.+++++|||+|++||+.++++|+.+.....++++++.+++++++++++++.++++.+|+||++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988766678899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccceeeecCChhhHHHHHHHHHHHHHhcccccccccccC
Q 013165 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (448)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~ 400 (448)
+.+.++.+.+.+++.+..+.|++|+|+++++.+|+++|.+.+.++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999998888888899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCcccc
Q 013165 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADE-EGYDDEEE 440 (448)
Q Consensus 401 ~Gmee~eF~ea~~~l~~l~~~Y~~~~~~~~~~-~~~~~~~~ 440 (448)
+|||++||.||+++|++++++|+++.+...+. ++|+|+|+
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~ 441 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEE 441 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99999999999999999999999987654222 24555444
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=5.8e-107 Score=838.39 Aligned_cols=425 Identities=35% Similarity=0.697 Sum_probs=398.8
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|||||+||+||||||||.+||+++++||+++++|.+..+.+.+.++.++||+|+.+++|+||+|+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 59999999999999999999999999999999987754433334678899999999999999999999999999999988
Q ss_pred CCcccCCCceeeccC--CCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 81 YGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++++|++++++++++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 899999999999996 69999999966 699999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCC-CCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCc
Q 013165 159 YPDRMMMTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
||++.+++++|+|+.. .++++++|||++|+|++|.+++|+++++||++|+++|.+.+++++|+|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999853 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchHhhhhcccccCCccccccccccccccc-cccccccCHHHHHHhccccCCcccccCCCC-----Ccch
Q 013165 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDSKNMMCAADPRH-----GRYL 311 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 311 (448)
+++||||.+|+|++++.+||||||++||++++++|+.+.. ...++..++.++++++++++++|+.++|.+ |+||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997642 345677899999999999999999998887 8999
Q ss_pred hhhccccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC---CCccceeeecCChhhHHHHHHHHHHHHHh
Q 013165 312 TASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAM 388 (448)
Q Consensus 312 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m 388 (448)
|+++++||++.+.++.+.+.+++.++.+.|++|+|+++++++|..+|. +.+.++++|+|+|+|..+|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888999999999999999998884 46788999999999999999999999999
Q ss_pred cccccccccccCCCCC----hhhHHHHHHHHHHHHHHHHHHH
Q 013165 389 FRRKAFLHWYTGEGMD----EMEFTEAESNMNDLVSEYQQYQ 426 (448)
Q Consensus 389 ~~kkAflH~Y~~~Gme----e~eF~ea~~~l~~l~~~Y~~~~ 426 (448)
|+||||||||+++||+ ++||.||+++|++|+++|++++
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~ 442 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACE 442 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999993 8999999999999999999875
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=6.7e-107 Score=833.79 Aligned_cols=420 Identities=38% Similarity=0.750 Sum_probs=397.7
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCC
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+++++||+++++|....+.+...++.++||+|+++++|+||+|+||+||++|++++++++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999999876544333456788999999999999999999999999999999988
Q ss_pred CcccCCCceeeccC--CCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhc
Q 013165 82 GQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (448)
Q Consensus 82 ~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y 159 (448)
+++|++++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999997 99999999966 6999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCC-CCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 160 PDRMMMTFSVFPSPKV-SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 160 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|++.+++++|+|+... ++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998553 488999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHhhhhcccccCCccccccccccccccc-cccccccCHHHHHHhccccCCcccccCC-CCCcchhhhcc
Q 013165 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG-SQQYRALTVPELTQQMWDSKNMMCAADP-RHGRYLTASAM 316 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 316 (448)
++||||.+|+|++++++||||||++||++++++|+.+.. ...++..+|.+|++.+++++++|+.++| .+++|||++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999876 4667889999999999999999999998 89999999999
Q ss_pred ccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC---CCccceeeecCChhhHHHHHHHHHHHHHhccccc
Q 013165 317 FRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT---GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKA 393 (448)
Q Consensus 317 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkA 393 (448)
+||++.+.++.+.+.+++.+..+.|++|+|+++++++|+.+|. +.+.++++++|+|+|.++|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999988874 4578999999999999999999999999999999
Q ss_pred ccccccCCCCC---hhhHHHHHHHHHHHHHHH
Q 013165 394 FLHWYTGEGMD---EMEFTEAESNMNDLVSEY 422 (448)
Q Consensus 394 flH~Y~~~Gme---e~eF~ea~~~l~~l~~~Y 422 (448)
|||||+++||| ++||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.9e-106 Score=832.01 Aligned_cols=424 Identities=87% Similarity=1.401 Sum_probs=405.0
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCC
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+++++||+++++|.+..+.+...+..++||+|+.+++|+||+|+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999999876544433345778999999999999999999999999999998888
Q ss_pred CcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013165 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (448)
+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccccc
Q 013165 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+...++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccC
Q 013165 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKM 321 (448)
Q Consensus 242 ~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (448)
|||.+|.|++++.+||||||++||++++++|+.+.....++.+++.+|++++|+++++++.++|.+++||++++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987666788899999999999999999989999999999999999999
Q ss_pred ChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccceeeecCChhhHHHHHHHHHHHHHhcccccccccccCC
Q 013165 322 STKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
.+.++.+.+.+++.+..+.|++|+|+++++.+|+++|.+.+.++++|+|+|+|..+|++++++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999888888999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 013165 402 GMDEMEFTEAESNMNDLVSEYQQY 425 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~~ 425 (448)
||||+||.||+++|++++++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.9e-106 Score=832.07 Aligned_cols=423 Identities=42% Similarity=0.839 Sum_probs=401.6
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCch--hhhcccccccccCCCCCCcccceeeCCCCCcccccccc
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSE--LQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSG 79 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~ 79 (448)
||||+||+||||||||.+||+++++||+++++|.+..+.. ...++.++||+|+.+++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999999987644332 23457899999999999999999999999999999998
Q ss_pred CCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhc
Q 013165 80 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEY 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y 159 (448)
+.+.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccc
Q 013165 160 PDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (448)
Q Consensus 160 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (448)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999996667889999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccc
Q 013165 240 LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRG 319 (448)
Q Consensus 240 ~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 319 (448)
+||||..+.|+++++++|||||++||++++++|+++.....+++.+|.+|++++++++++|+.+++..++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999876677888999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC--------CCccceeeecCChhhHHHHHHHHHHHHHhccc
Q 013165 320 KMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRR 391 (448)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~k 391 (448)
++.+.++.+.+.+++.+..+.|++|+|+++++++|..+|. +.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888999999999999999998764 23578999999999999999999999999999
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013165 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 392 kAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
|||||||+++||||+||.||+++|++++++|++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999986
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.1e-105 Score=829.42 Aligned_cols=417 Identities=34% Similarity=0.678 Sum_probs=392.9
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcC-CCCCCCCCCCchhhhcccccccccCC-----CC--CCcccceeeCCCCCc
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHG-IDSTGRYDGDSELQLERINVYYNEAS-----CG--RFVPRAVLMDLEPGT 72 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~~-----~~--~~~pR~llvD~e~~~ 72 (448)
|||||+||+||||||||.+||+++++||+ ++++|.+ .++.++||+|.. .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 7777754 356789998532 23 499999999999999
Q ss_pred cccccccCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHH
Q 013165 73 MDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLI 152 (448)
Q Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~ll 152 (448)
|++++.++++++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCC-------------
Q 013165 153 SKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTT------------- 219 (448)
Q Consensus 153 e~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~------------- 219 (448)
|.|||+||++.+++++|+|+ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688899999999999999999999999999999999988776653
Q ss_pred --------------CCcccchHHHHHHhhcCcccccCCCCCccchHhhhhcccccCCccccccccccccccccccccccC
Q 013165 220 --------------PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALT 285 (448)
Q Consensus 220 --------------~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t 285 (448)
++|+++|++||++|+++|+++||||.+|+|++++.+||||||++||++++++|+.+.....+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 889999999999999999999999999999999999999999999999999999886666778899
Q ss_pred HHHHHHhccccCCcccccCCCCCcchhhhccccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccce
Q 013165 286 VPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMAS 365 (448)
Q Consensus 286 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~ 365 (448)
|.+|++++++++++|+.++|.+++||++++++||+..+.++.+.+.+++. .+.|++|+|+++++++|+++|.+.+.++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999888999988887764 4889999999999999999998889999
Q ss_pred eeecCChhhHHHHHHHHHHHHHhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHhh
Q 013165 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (448)
Q Consensus 366 ~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~~~~ 428 (448)
++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++++++|++++..
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 7999999999999999999999998743
No 11
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.9e-102 Score=748.04 Aligned_cols=424 Identities=37% Similarity=0.728 Sum_probs=397.4
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
||||||+|+||||||||.+||+++|.||||.++|......+.+.++.++||++..++.|+|||||||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 58999999999999999999999999999999999766666667899999999999999999999999999999999999
Q ss_pred CCcccCCCceeec--cCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 81 YGQIFRPDNFVFG--QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++++|+++|++.. ..|+|||||.||. .|+++.|+|+|.|+|++|.||+|.||+++||++||||||+||.|+|.|+|.
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998765 4679999999976 599999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCC-CCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCc
Q 013165 159 YPDRMMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 159 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
||||.+.+++|||.. ..+|++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+.+|+|.++|+++|.++++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999984 3789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchHhhhhcccccCCcccccccccccccccccc--ccccCHHHHHHhccccCCcccccCC---CCCcchh
Q 013165 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ--YRALTVPELTQQMWDSKNMMCAADP---RHGRYLT 312 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~--~~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 312 (448)
.++||||+++.++..+...|+|+|++||+.+++.|+++..... +++.++.+..++++.|+++|+...+ .+..+++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 9999999999999999999999999999999999999865443 4888999999999999999988765 2336889
Q ss_pred hhccccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCC---CCCccceeeecCChhhHHHHHHHHHHHHHhc
Q 013165 313 ASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPP---TGLKMASTFIGNSTSIQEMFRRVSEQFTAMF 389 (448)
Q Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~ 389 (448)
...++.|.+.+..+.+.+.+++.+....|++|.|.++.++..+..| ..++.|+.+|+|||+|..+|++++.+|+||+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888899999999999988766554 4568899999999999999999999999999
Q ss_pred ccccccccccCCCCChh---hHHHHHHHHHHHHHHHHHH
Q 013165 390 RRKAFLHWYTGEGMDEM---EFTEAESNMNDLVSEYQQY 425 (448)
Q Consensus 390 ~kkAflH~Y~~~Gmee~---eF~ea~~~l~~l~~~Y~~~ 425 (448)
+||||||.|.++||+++ ||.|+++.|++++++|+..
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~ 439 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAA 439 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988 9999999999999999885
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=2.9e-98 Score=760.21 Aligned_cols=378 Identities=38% Similarity=0.738 Sum_probs=363.5
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCC
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPY 81 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~ 81 (448)
||||+||+||||||||.+||+.+++|| |+||+|+||+||++|++++.+++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh------------------------------~~pR~v~iD~e~~~i~~i~~~~~ 50 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH------------------------------LKARAVLIDMEEGVVNEILKGPL 50 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh------------------------------cCCcceeccCChhHHHHHhcCcc
Confidence 799999999999999999999999997 57999999999999999999888
Q ss_pred CcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013165 82 GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (448)
+++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|||+||+
T Consensus 51 ~~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~ 130 (379)
T cd02190 51 RDLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPE 130 (379)
T ss_pred ccccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccccc
Q 013165 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++|
T Consensus 131 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 131 VYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred cceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 999999999995 5888999999999999999999999999999996 699999999999999999999
Q ss_pred CCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccC
Q 013165 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKM 321 (448)
Q Consensus 242 ~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 321 (448)
|||.+|.|++++.++|||+|++||++++++|+.+.....+++.++.+|++.+++++++|+.+++.+++|+++++++||+.
T Consensus 198 f~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~ 277 (379)
T cd02190 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNV 277 (379)
T ss_pred cccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999986666678899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccceeeecCChhhHHHHHHHHHHHHHhcccccccccccCC
Q 013165 322 STKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
.+.++.+.+.+++.+ ..|++|+|+++++++|+++|.+.+.++++++|+|+|..+|++++++|++||+||||||||+++
T Consensus 278 ~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~e 355 (379)
T cd02190 278 SVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQV 355 (379)
T ss_pred CHHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCC
Confidence 999999888877665 679999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013165 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
||||+||.||+++|++++++|++
T Consensus 356 G~ee~ef~ea~~~l~~li~~Y~~ 378 (379)
T cd02190 356 GMEQGDFTEALESISNLIDEYDY 378 (379)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=4.1e-98 Score=773.87 Aligned_cols=410 Identities=27% Similarity=0.549 Sum_probs=377.7
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCC-
Q 013165 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG- 82 (448)
Q Consensus 4 iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~- 82 (448)
||+||+||||||||.+||+++++||+++++|.+. ...+..++||.|..+++|+||+|+||+||++|+++++++.+
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998887653 12457789999999999999999999999999999986543
Q ss_pred -cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013165 83 -QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 83 -~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (448)
.+|++++++.+++|+|||||+||+..|+++.|+++|+|||++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccccc
Q 013165 162 RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (448)
Q Consensus 162 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 241 (448)
+.+++++|+|+ ..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.|+++|++.|
T Consensus 158 ~~~~~~~v~P~-~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPY-TTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCC-CCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 99999999998 47899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhcc---ccCCcccc--------
Q 013165 242 F-P-------GQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMW---DSKNMMCA-------- 302 (448)
Q Consensus 242 ~-~-------~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 302 (448)
+ + |+.+.++++++++|||+|++||++++++|+++.....++..+|.+|+++++ .+.+++..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 6 5 346899999999999999999999999999987777788899999999865 56666644
Q ss_pred -----------cCCCCCcchhhhccccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC--CCccceeeec
Q 013165 303 -----------ADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--GLKMASTFIG 369 (448)
Q Consensus 303 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~--~~~~s~~~l~ 369 (448)
+++..++||++++++||+....++...+ +....|++|+|+++++++|..++. ..++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 3567889999999999987776765432 356889999999999999998774 3689999999
Q ss_pred CChhhHHHHHHHHHHHHHhcccccccccccCCCCChhhHHHHHHHHHHHHHHHH
Q 013165 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423 (448)
Q Consensus 370 Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~ 423 (448)
|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++++++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=4.7e-90 Score=704.10 Aligned_cols=381 Identities=51% Similarity=0.944 Sum_probs=362.9
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCC
Q 013165 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (448)
Q Consensus 3 Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||.+||+++ |+||+||++++.++.++.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~---------------------------------------i~iD~e~~~i~~i~~~~~~ 41 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL---------------------------------------ILVDLDPRVINEILQGQLS 41 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH---------------------------------------HcccCCcchhhhhhccccc
Confidence 8999999999999999999955 9999999999999998888
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013165 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (448)
.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||++
T Consensus 42 ~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~ 121 (382)
T cd06059 42 KLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKI 121 (382)
T ss_pred ccCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccC
Q 013165 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (448)
.+++++|+|+...+++++++||++|+|++|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~ 201 (382)
T cd06059 122 LINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRF 201 (382)
T ss_pred ceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhccccccccc
Confidence 99999999996655689999999999999999999999999999999998888888999999999999999999999999
Q ss_pred CCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccCC
Q 013165 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMS 322 (448)
Q Consensus 243 ~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (448)
||.+|.|++++.++|||+|++||++++++|+++.....++..++.+++++++.+.+++..+++..++++++++++||+..
T Consensus 202 ~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~ 281 (382)
T cd06059 202 PGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVF 281 (382)
T ss_pred CCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999866666778899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC-CCccceeeecCChhhHHHHHHHHHHHHHhcccccccccccCC
Q 013165 323 TKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGE 401 (448)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~ 401 (448)
+.++.+.+.+++.+.... +|+|+++++++|++++. +..+++++++|||+|..+|+++.++|++||+||||||||+++
T Consensus 282 ~~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~ 359 (382)
T cd06059 282 QSEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGE 359 (382)
T ss_pred HHHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCc
Confidence 999998888877655443 89999999999999997 788999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q 013165 402 GMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 402 Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
||||+||.||+++|++++++|++
T Consensus 360 G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 360 GMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999963
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=5.9e-88 Score=647.35 Aligned_cols=404 Identities=42% Similarity=0.812 Sum_probs=380.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchh--hhcccccccccCCCCCCcccceeeCCCCCccccccc
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSEL--QLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRS 78 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~ 78 (448)
|||||.|++||+|.|||++.|+++|.||+|.++|.+..+.+. ..+.+++||.++..++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998765443 34477899999999999999999999999 999999
Q ss_pred cCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 79 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++|+.+|||++++.|+++++||+|+|+|+.|+|..+..+++||+.++.|..||||.++||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+||..+.++++|.+..+..+++|||++|+.....+++|+.+++||++++++|++.+.+..|+|.++|++|+++++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhcccc
Q 013165 239 CLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFR 318 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 318 (448)
++||+|.+|+||.++++||+||| + ++|+.+..+..+.+.++.+++...|.+.+||++|+|.+|||+++|+++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999887777788899999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCCCccceeeecCChhhHHHHHHHHHHHHHhcccccccccc
Q 013165 319 GKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWY 398 (448)
Q Consensus 319 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y 398 (448)
|++.|+++...+..+|.+.++.|++-.-.+- ...+..++.|+|+|+|+|++.|.++.++|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg-------~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPGG-------DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccCc-------chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 9999999999999999999999987221111 112345789999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHH
Q 013165 399 TGEGMDEMEFTEAESNMNDLV 419 (448)
Q Consensus 399 ~~~Gmee~eF~ea~~~l~~l~ 419 (448)
+++||||+||.||+++|..+.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998764
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=5.9e-68 Score=511.86 Aligned_cols=353 Identities=88% Similarity=1.368 Sum_probs=333.1
Q ss_pred hhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHH
Q 013165 41 ELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120 (448)
Q Consensus 41 ~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~i 120 (448)
+.+..+.+++|.+...++|+||+|+||++|++++.+++++++.+|+|++ +++| .|+|..|.+..|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 3456788999999999999999999999999999999999999999998 4444 7889999888776
Q ss_pred HHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcce
Q 013165 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200 (448)
Q Consensus 121 r~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i 200 (448)
.||.+|||+++||++||||||.|++++..++++||.+.+.+++|.|+++ ++++++|||+.|++..|.+++|.++
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999966 9999999999999999999999999
Q ss_pred eecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccCCCCCccchHhhhhcccccCCcccccccccccccccccc
Q 013165 201 VLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQ 280 (448)
Q Consensus 201 ~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~ 280 (448)
++||++|+++|.+.++++.++ ++|..+||||.+|.|++++..|++|+|++||+.+.++|++....++
T Consensus 145 cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q 211 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ 211 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccc
Confidence 999999999999999988887 8899999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccCChHHHHHHHHhhhcccCCccccccCCCcceeeeccCCCC
Q 013165 281 YRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTG 360 (448)
Q Consensus 281 ~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~ 360 (448)
++.+++++++.++|+.+++|..++ |++++.++|| ..+++..++..++.|....|++|+|+++++.+|.++|.+
T Consensus 212 ~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~g 284 (369)
T KOG1375|consen 212 YRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGG 284 (369)
T ss_pred cccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcc
Confidence 999999999999999999998887 9999999999 678889999999999999999999999999999999999
Q ss_pred CccceeeecCChhhHHHHHHHHHHHHHhcccccccccccCCCCChhhHHHHHHHHHHHHHHHHHH-HhhcCCCC
Q 013165 361 LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY-QDATADEE 433 (448)
Q Consensus 361 ~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAflH~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~~-~~~~~~~~ 433 (448)
.+.+.+.++|+|+|.+.|+++.++|..||+||||||||.++||+|+||+||..++++++.+|+++ ++..++++
T Consensus 285 lkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~~~ 358 (369)
T KOG1375|consen 285 LKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAEEE 358 (369)
T ss_pred ccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 45444433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=1e-64 Score=508.52 Aligned_cols=327 Identities=49% Similarity=0.874 Sum_probs=303.6
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCC
Q 013165 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (448)
Q Consensus 3 Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||++||+++ |+||+|+++++.++..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~---------------------------------------v~idtd~~~l~~~~~~~~~ 41 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL---------------------------------------VLVDTEPGVIDETLSGPYR 41 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh---------------------------------------heecCCHHHHHHHhCcccc
Confidence 8999999999999999999842 9999999999999988877
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013165 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (448)
.+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|||+||++
T Consensus 42 ~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~ 121 (328)
T cd00286 42 LLFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKR 121 (328)
T ss_pred cccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccC
Q 013165 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRF 242 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 242 (448)
.+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+
T Consensus 122 ~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 200 (328)
T cd00286 122 LKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRF 200 (328)
T ss_pred ceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhcccccccccc
Confidence 99999999995433 68999999999999999999999999999999998888888899999999999999999999999
Q ss_pred CCCCccchHhhhhcccccCCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccCC
Q 013165 243 PGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMS 322 (448)
Q Consensus 243 ~~~~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 322 (448)
||.+|.|++++.++|+|+|++||++++++|+.+.....+...++.++++++++++++++.+++..++++++++++||+..
T Consensus 201 ~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~ 280 (328)
T cd00286 201 DGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVS 280 (328)
T ss_pred CccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCC
Confidence 99999999999999999999999999999998755555667789999999999999998888888999999999999998
Q ss_pred hHHHHHHHHhhhcccCCccccccCCCcceeeeccCCC-CCccceeeecCC
Q 013165 323 TKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT-GLKMASTFIGNS 371 (448)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~-~~~~s~~~l~Ns 371 (448)
..++.+.+..++.+.++. +|+|++++++.|+.++. ..+.++++++|+
T Consensus 281 ~~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 281 PSEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred hHHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 889988888777665544 89999999999998876 678889999986
No 18
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.1e-51 Score=390.35 Aligned_cols=215 Identities=48% Similarity=0.952 Sum_probs=200.9
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCC
Q 013165 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (448)
Q Consensus 3 Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
|||+||+||||||||.+||+++++||+++++ ........+.++||+|...++|+||+|+||+|++++++++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~----~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPD----SKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTT----SSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccc----cccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999887 122234567789999999999999999999999999999988777
Q ss_pred cccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013165 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (448)
.+|++++++.+++|+|+||+.||+..|+++.++++|+||+++|+||.++||+++||+|||||||++|.|++.||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcc
Q 013165 163 MMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFG 223 (448)
Q Consensus 163 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~ 223 (448)
++++++|+|+ .. +.++++||++++|++|.+++|++|++||++|.++|.+.+++.+|+|+
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999999 44 88999999999999999999999999999999999999998878775
No 19
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=9.8e-49 Score=405.37 Aligned_cols=407 Identities=21% Similarity=0.237 Sum_probs=287.2
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCC----CCCCcccceeeCCCCCcccc--
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEAS----CGRFVPRAVLMDLEPGTMDS-- 75 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~----~~~~~pR~llvD~e~~~i~~-- 75 (448)
|||||||+||++|+||+||||.|...+++.+++. ....+++++||++. ..+|+||+|++|++++.-.-
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999977775554432 22457899999864 66999999999999953211
Q ss_pred --------------ccccCCCcccCCCceeecc-----CCCCCCCCCCccc---cchhhHHHHHHHHHHHhhhcCCCCCc
Q 013165 76 --------------VRSGPYGQIFRPDNFVFGQ-----SGAGNNWAKGHYT---EGAELIDSVLDVVRKEAENCDCLQGF 133 (448)
Q Consensus 76 --------------~~~~~~~~~~~~~~~~~~~-----~~~gnnwa~G~~~---~g~~~~e~~~d~ir~~~E~cd~lqgf 133 (448)
.|.+..+-.|||+++..-+ .+.+++|+.|+-. .+.+..|+++|+||+++|+||++|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 1222234468999886543 3455666665432 35568899999999999999999999
Q ss_pred eeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCC----CCcchhhhHHHHHHHHHhhccCcceeecc-hhhh
Q 013165 134 QVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV----SDTVVEPYNATLSVHQLVENADECMVLDN-EALY 208 (448)
Q Consensus 134 ~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N-~~l~ 208 (448)
++++|++||| ||+|+.++|.|+|||||+.++++++.|.... .+.++++||++|++.+|.+++|+++|+.- ..+|
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 8999999999999999999999999997432 25789999999999999999999999984 3444
Q ss_pred hhhccc-----cCCCCCCcccchHHHHHHhhcCcccccCCCCCccchHhhhhcccccCCcccccccc-cccccccccccc
Q 013165 209 DICFRT-----LKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGF-APLTSRGSQQYR 282 (448)
Q Consensus 209 ~~~~~~-----~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~~~~~~~l~~~L~P~p~~~fl~~s~-~P~~~~~~~~~~ 282 (448)
...... +.+...+..+..+++|.+|.++|.++|..+.. .+|.++...|.+..| |+...+. .|+.. ..
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~-----~~ 306 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPM-----VG 306 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCC-----CC
Confidence 433221 22233345567899999999999999998765 579999999997654 7766544 34432 12
Q ss_pred ccCHHHHHHhccc--cCCcccccCCCCCcchhhhccccccCChH-------------------HHHHHHHhh-hcccCCc
Q 013165 283 ALTVPELTQQMWD--SKNMMCAADPRHGRYLTASAMFRGKMSTK-------------------EVDEQMLNV-QNKNSSY 340 (448)
Q Consensus 283 ~~t~~~l~~~~~~--~~~~~~~~~~~~~~~ls~~~~~RG~~~~~-------------------~~~~~~~~~-~~~~~~~ 340 (448)
+-++.+++.++-. +..++....+...++.++++++||..... .+.+.+... +...+..
T Consensus 307 ~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s 386 (493)
T cd06060 307 GQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGS 386 (493)
T ss_pred CCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCc
Confidence 2356666665422 11223221123457889999999964110 111111110 0000111
Q ss_pred c----cc----ccCCCcce-eeeccCCC----------------CCccceeeecCChhhHHHHHHHHHHHHHhccccccc
Q 013165 341 F----VE----WIPNNVKS-TVCDIPPT----------------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL 395 (448)
Q Consensus 341 f----~~----w~p~~~~~-~~~~~~~~----------------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~kkAfl 395 (448)
+ +. -+|.|+.. -...+... ..-..++.|.|++++.++|+.++.+..++-.+| +
T Consensus 387 ~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~ 464 (493)
T cd06060 387 MSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--K 464 (493)
T ss_pred chhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--h
Confidence 1 00 00111110 00000000 001235678999999999999999999999999 9
Q ss_pred ccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 013165 396 HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (448)
Q Consensus 396 H~Y~~~Gmee~eF~ea~~~l~~l~~~Y~~ 424 (448)
|.|.+.|+|+|||+|+.+.|.+++++|++
T Consensus 465 ~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 465 ASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999963
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=3.9e-37 Score=285.81 Aligned_cols=185 Identities=39% Similarity=0.704 Sum_probs=171.2
Q ss_pred cccccCCCCCCcccceeeCCCCCccccccccCCCcccCCCceeeccCCCCCCCCCCccc-----cchhhHHHHHHHHHHH
Q 013165 49 VYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT-----EGAELIDSVLDVVRKE 123 (448)
Q Consensus 49 ~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~-----~g~~~~e~~~d~ir~~ 123 (448)
++|.+ |++.||+|++|+++++++.+..++.+..|++.+.+.++.++||||++||+. .|++..++++|+||++
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~ 79 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREE 79 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 45654 378899999999999999988777777899988899999999999999998 8999999999999999
Q ss_pred hhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeec
Q 013165 124 AENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203 (448)
Q Consensus 124 ~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 203 (448)
+|+| ++|+++||+|||||||+++.+++.++ +||++. ++++|+|+ ..|.++++||++++|++|.+++|+++++|
T Consensus 80 le~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~d 152 (192)
T smart00864 80 LEGA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVID 152 (192)
T ss_pred hcCC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEE
Confidence 9999 99999999999999999999999999 999876 99999995 57889999999999999999999999999
Q ss_pred chhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccCCC
Q 013165 204 NEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPG 244 (448)
Q Consensus 204 N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 244 (448)
|++|.++|.+.+.+ .++|+.+|++|++.|+++|.++||||
T Consensus 153 N~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 153 NDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred hHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999877765 78999999999999999999999987
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=6.6e-33 Score=278.81 Aligned_cols=219 Identities=22% Similarity=0.273 Sum_probs=190.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|| |..|++|+||+.|-+++++.- . ....+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~-----------------------~~~~~~~~~~iavntD~~~L~~l~~-- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----K-----------------------RSGFGYCVGALAINTAKNDLKGLKH-- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----C-----------------------CcCCccceeEEEEECCHHHHHhhhc--
Confidence 67 899999999999999987611 0 0123678999999999999887764
Q ss_pred CCcccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~--lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
.+.++.++.+++.+.+..+.|.+..|++..++..|.||+++|.||. +|+|+|++|||||||||+++.+++.++++
T Consensus 50 ---~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~ 126 (349)
T cd02202 50 ---IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKER 126 (349)
T ss_pred ---CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHh
Confidence 3467788888865544555555667899999999999999999997 99999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|| +++++++++|+.. +..+++||+++++++|.+++|.+|+|||++|.+++.. + .+.|+.+|++|++.|..++.
T Consensus 127 ~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~ 199 (349)
T cd02202 127 YE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLR 199 (349)
T ss_pred CC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHH
Confidence 99 8899999999843 4589999999999999999999999999999997642 2 47899999999999999999
Q ss_pred cccC-----CCCCccchHhhhhccccc
Q 013165 239 CLRF-----PGQLNSDLRKLAVNLIPF 260 (448)
Q Consensus 239 ~~r~-----~~~~~~~~~~l~~~L~P~ 260 (448)
+.|| ||.+|.|+.++.++|.+.
T Consensus 200 ~~r~~~~~~~g~invD~~dv~~~L~~~ 226 (349)
T cd02202 200 AGEANAGDSVGESVLDASEVINTLSGG 226 (349)
T ss_pred hhhcccCCCCCeEeccHHHHHHHhccC
Confidence 9999 999999999999999765
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.97 E-value=2.8e-31 Score=262.13 Aligned_cols=239 Identities=24% Similarity=0.358 Sum_probs=171.9
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhccc-ccccccC----CCCCCcccceeeCCCCCccc-
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERI-NVYYNEA----SCGRFVPRAVLMDLEPGTMD- 74 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~F~e~----~~~~~~pR~llvD~e~~~i~- 74 (448)
||||+|||+|+.+|++|+||||+|..-.++.++...... .... ||+|+.+ +..+|+||+|++|+++..-.
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~----~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG----ELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh----hcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 999999999999999999999999877777765433211 1122 8999976 33499999999999883210
Q ss_pred -----------------------cccccC-------------------------------------------CCcccCCC
Q 013165 75 -----------------------SVRSGP-------------------------------------------YGQIFRPD 88 (448)
Q Consensus 75 -----------------------~~~~~~-------------------------------------------~~~~~~~~ 88 (448)
.++..+ .+..|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 000000 01234544
Q ss_pred ceeecc-----CCCCCCCCCCccccch-hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCc
Q 013165 89 NFVFGQ-----SGAGNNWAKGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 89 ~~~~~~-----~~~gnnwa~G~~~~g~-~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (448)
.+..-+ .++-++|..|+-..-+ .+.+++.|+||+++|+||.||||+++.++.+|+| |+++.++|.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCC
Confidence 432221 2222444555432222 2568899999999999999999999999999986 99999999999999999
Q ss_pred ceeEEEEecCCCC-CCcchh------hhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhc
Q 013165 163 MMMTFSVFPSPKV-SDTVVE------PYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235 (448)
Q Consensus 163 ~i~~~~v~P~~~~-~~~~~~------~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 235 (448)
.+.++.+.|.+.. ++.... ..|.++++.+|.+.|++++|+.--.. ++ ......+++|.++.+
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~-------~~----~~~~tsA~~a~~~ds 304 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASG-------LG----DLWETSAKLARAFDS 304 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccc-------cc----cHHHHHHHHHhhccc
Confidence 9999999985432 222222 56899999999999999999853221 11 234567999999999
Q ss_pred CcccccCCCCCccchHhhhh
Q 013165 236 VTCCLRFPGQLNSDLRKLAV 255 (448)
Q Consensus 236 ~t~~~r~~~~~~~~~~~l~~ 255 (448)
+|.|.|..+..+.-+.++.+
T Consensus 305 ~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 305 ITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccceecchhHHHHHHHHH
Confidence 99999999886655544443
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=3.6e-28 Score=240.02 Aligned_cols=202 Identities=23% Similarity=0.339 Sum_probs=168.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccC
Q 013165 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP 80 (448)
Q Consensus 1 M~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~ 80 (448)
|+ |..|.+|+||+.+-+++++. ++ . -.+.+.||++...++.+..
T Consensus 1 ~~-i~viGvGg~G~n~v~~~~~~-----~~-------------------------~---~~~~iainTd~~~L~~~~a-- 44 (303)
T cd02191 1 AK-IAVIGFGGAGGNIVDKFLEY-----DK-------------------------E---GRSAVAVNTDAQDLLGLEA-- 44 (303)
T ss_pred CE-EEEEEECchHHHHHHHHHHc-----CC-------------------------C---CccEEEEECcHHHHhcCCC--
Confidence 44 88899999999999998751 00 0 1467999999887766542
Q ss_pred CCcccCCCceeec-----cCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHH
Q 013165 81 YGQIFRPDNFVFG-----QSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKI 155 (448)
Q Consensus 81 ~~~~~~~~~~~~~-----~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l 155 (448)
++.++.| ..|+|+||+. |++..++.+|+||+.+|.||. |+|+++||||||||+++.+++.+
T Consensus 45 ------~~ki~iG~~~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ 110 (303)
T cd02191 45 ------ENRVLIGQARTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHL 110 (303)
T ss_pred ------CcEEecCCccccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHH
Confidence 2233443 3578888764 568999999999999999984 89999999999999999999999
Q ss_pred HhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhc
Q 013165 156 REEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSG 235 (448)
Q Consensus 156 ~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~ 235 (448)
++.|+ .+++|.|.|...|..+++||+.+++++|.+++|.++++||++|.+++.+ +.+ ...|+.+|++|++.+.+
T Consensus 111 ke~~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~-~~af~~~N~~ia~~i~~ 184 (303)
T cd02191 111 KRIGT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASL-EGAFDHADEVLVRAVGG 184 (303)
T ss_pred HHhCC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHH
Confidence 99985 3455555544667789999999999999999999999999999999976 766 45999999999999999
Q ss_pred CcccccCCCCCccchHhhhhccc
Q 013165 236 VTCCLRFPGQLNSDLRKLAVNLI 258 (448)
Q Consensus 236 ~t~~~r~~~~~~~~~~~l~~~L~ 258 (448)
+|.++|+||.+|.|++++.+.|-
T Consensus 185 it~~i~~~g~invD~~dv~~~l~ 207 (303)
T cd02191 185 LFGAIEIEGEINVDFADVKNVMD 207 (303)
T ss_pred HHHhhccCCcccCCHHHHHHHhc
Confidence 99999999999999999987663
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.93 E-value=4.2e-26 Score=228.81 Aligned_cols=200 Identities=20% Similarity=0.335 Sum_probs=162.3
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCCc
Q 013165 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (448)
Q Consensus 4 iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|++|+||+.+-+++++. ++ .-...+.+|++...++.+..
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~----------------------------~~~~~iainTD~~~L~~~~a----- 61 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV----------------------------EGVEFIAINTDAQHLKTTKA----- 61 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC----------------------------CceEEEEEECCHHHHhcCCC-----
Confidence 78899999999999998762 00 01456889998766655442
Q ss_pred ccCCCceeecc-----CCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 84 IFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 84 ~~~~~~~~~~~-----~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++.+..|+ .|+|++|+ .|++..++.+|.||+.+|.||.+ +|++|+|||||||+++.+++.+++
T Consensus 62 ---~~ki~iG~~~t~G~GaG~~~~-----~G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake- 129 (349)
T TIGR00065 62 ---DKKILIGKKLTRGLGAGGNPE-----IGRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE- 129 (349)
T ss_pred ---CeEEEcCCCCCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-
Confidence 23344443 36777766 57899999999999999999986 999999999999999966666554
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ +.++++.++|+ ..|..+++||+.++|++|.+++|+++++||++|+++|.+ +.+. ..|+.+|.+|++.+.++|.
T Consensus 130 ~~-~l~vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~ 204 (349)
T TIGR00065 130 LG-ALTVAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISE 204 (349)
T ss_pred cC-CCEEEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHH
Confidence 64 44555555555 567789999999999999999999999999999999977 7763 4899999999999999999
Q ss_pred cccCCCCCccchHhhhhccc
Q 013165 239 CLRFPGQLNSDLRKLAVNLI 258 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~ 258 (448)
++|+||.+|.|+.++.+-|-
T Consensus 205 ~ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 205 LITKPGLINIDFADVRAVMS 224 (349)
T ss_pred hhccCCcCcCCHHHHHHHHh
Confidence 99999999999999988664
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.93 E-value=1.5e-25 Score=222.17 Aligned_cols=202 Identities=18% Similarity=0.321 Sum_probs=164.5
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCCc
Q 013165 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (448)
Q Consensus 4 iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|++|+||+.+-+++++. ++ . -...+.+|+|...++.+..
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~-------------------------~---~~~~~a~ntD~~~L~~~~~----- 44 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GL-------------------------E---GVEFIAANTDAQALAKSKA----- 44 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------C---CceEEEEECCHHHHhcCCC-----
Confidence 77899999999999998761 00 0 0456889998877665542
Q ss_pred ccCCCceeecc-----CCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhh
Q 013165 84 IFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158 (448)
Q Consensus 84 ~~~~~~~~~~~-----~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~ 158 (448)
++.+..|+ .|+|++|+. |++..++.+|.||+.+|.||.+ +|++|+|||||||+++.+++..+ +
T Consensus 45 ---~~k~~ig~~~t~g~Gag~~~~~-----g~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e 112 (304)
T cd02201 45 ---PNKIQLGKELTRGLGAGGDPEV-----GRKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-E 112 (304)
T ss_pred ---CcEEEcCCCCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-H
Confidence 12333433 467777764 5678899999999999999986 99999999999999998776665 5
Q ss_pred cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcc
Q 013165 159 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTC 238 (448)
Q Consensus 159 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 238 (448)
|+ +.++++.++|+ ..|..+++||+.+++++|.+++|.++++||++|.++|.+.+.+.. .|+.+|.+|++.+.++|.
T Consensus 113 ~g-~~~~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~ 188 (304)
T cd02201 113 MG-ALTVAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISD 188 (304)
T ss_pred cC-CCEEEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 65 35555556665 456679999999999999999999999999999999977777654 799999999999999999
Q ss_pred cccCCCCCccchHhhhhcccc
Q 013165 239 CLRFPGQLNSDLRKLAVNLIP 259 (448)
Q Consensus 239 ~~r~~~~~~~~~~~l~~~L~P 259 (448)
++|+||.+|.|+.++.+.|-.
T Consensus 189 ~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 189 LITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HhccCccccCCHHHHHHHhcc
Confidence 999999999999999988754
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.92 E-value=1.2e-24 Score=219.24 Aligned_cols=205 Identities=21% Similarity=0.362 Sum_probs=165.7
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCCc
Q 013165 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (448)
Q Consensus 4 iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|++|+||+.+-+++++. ++ .+ ...+.|+++...++.+..
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~-------------------------~~---v~~iaiNTD~q~L~~~~a----- 72 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GI-------------------------EG---AETIAINTDAQHLAMIKA----- 72 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEECCHHHHhcCCC-----
Confidence 78899999999999998751 10 00 356899998876655432
Q ss_pred ccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcc
Q 013165 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (448)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (448)
+..+..|+.-..+..+.|.+..|++..++.+|.||+.+|.||. |+|++|||||||||+++.+++.+++ ++ ..
T Consensus 73 ---~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~l 144 (378)
T PRK13018 73 ---DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-AL 144 (378)
T ss_pred ---CcEEecCCccCCCCCCCCChHHHHHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CC
Confidence 2344555433333333344556678889999999999999987 7999999999999999999999997 44 55
Q ss_pred eeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccCC
Q 013165 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (448)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (448)
++++++.|+. .+...+..|+.++|++|.+++|+++++||++|.++| +.+.+. ..|+.+|.+|++.+.++|.++|+|
T Consensus 145 tv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~ 220 (378)
T PRK13018 145 VVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKP 220 (378)
T ss_pred eEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC
Confidence 6788889983 455688999999999999999999999999999999 667664 479999999999999999999999
Q ss_pred CCCccchHhhhhccc
Q 013165 244 GQLNSDLRKLAVNLI 258 (448)
Q Consensus 244 ~~~~~~~~~l~~~L~ 258 (448)
|.+|.|+.++.+-|-
T Consensus 221 G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 221 SLINLDFADVKSVMK 235 (378)
T ss_pred CceecCHHHHHHHhc
Confidence 999999999988664
No 27
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.89 E-value=2.1e-23 Score=180.70 Aligned_cols=123 Identities=42% Similarity=0.860 Sum_probs=112.1
Q ss_pred CCccccccccccccccccccccccCHHHHHHhccccCCcccccCCCCCcchhhhccccccCChHHHHHHHHhhhcccCCc
Q 013165 261 PRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSY 340 (448)
Q Consensus 261 p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 340 (448)
|++||+.++++|+........++.++.+|++++|+++++|++++|.+|+|||+++++||++.+.++.+.+.+++.+..+.
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988778899999999999999999999999999999999999999999999999999999998899
Q ss_pred cccccCCCcceeeeccCCCCCccc---eeeecCChhhHHHHHHHHH
Q 013165 341 FVEWIPNNVKSTVCDIPPTGLKMA---STFIGNSTSIQEMFRRVSE 383 (448)
Q Consensus 341 f~~w~p~~~~~~~~~~~~~~~~~s---~~~l~Nst~i~~~l~~l~~ 383 (448)
|++|+|+++++++|.++|.+...+ +++|+|+|+|+++|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999887776 9999999999999999874
No 28
>PRK09330 cell division protein FtsZ; Validated
Probab=99.88 E-value=1.1e-22 Score=205.25 Aligned_cols=202 Identities=21% Similarity=0.359 Sum_probs=162.3
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCC
Q 013165 3 EILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYG 82 (448)
Q Consensus 3 Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~ 82 (448)
.|..|++|+||+.+-++.++. ++ .+ ...+.+++|...+..+..
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~-------------------------~~---v~fia~NTD~q~L~~~~a---- 57 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GI-------------------------QG---VEFIAANTDAQALLKSKA---- 57 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CC-------------------------CC---ceEEEEeCcHHHHhcCCC----
Confidence 377899999999999998761 10 00 245888888776654432
Q ss_pred cccCCCceeecc-----CCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHh
Q 013165 83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (448)
Q Consensus 83 ~~~~~~~~~~~~-----~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d 157 (448)
+..+..|+ .|+|++|. .|++..++.+|.||+.+|.||.+ +|+++||||||||.++. +..+..
T Consensus 58 ----~~ki~lG~~~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iak 124 (384)
T PRK09330 58 ----PVKIQLGEKLTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAK 124 (384)
T ss_pred ----CeEEEcCCcccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHH
Confidence 22344444 35565554 77899999999999999999888 99999999999999994 556666
Q ss_pred hcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCc
Q 013165 158 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237 (448)
Q Consensus 158 ~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 237 (448)
+|+ +++++|.|.+...|..+++||+.++|+.|.+++|.+|+++|++|.+++.+.+.+. ..|+.+|.+|++.+.+++
T Consensus 125 e~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It 200 (384)
T PRK09330 125 ELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGIT 200 (384)
T ss_pred HcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 675 5566666655577888999999999999999999999999999999987766664 389999999999999999
Q ss_pred ccccCCCCCccchHhhhhccc
Q 013165 238 CCLRFPGQLNSDLRKLAVNLI 258 (448)
Q Consensus 238 ~~~r~~~~~~~~~~~l~~~L~ 258 (448)
..+++||.+|.|+.++.+-|-
T Consensus 201 ~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 201 DLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHHhcCCcccCCHHHHHHHHh
Confidence 999999999999999987654
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.84 E-value=1.9e-20 Score=171.19 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=112.6
Q ss_pred cccCCCcccCCCceeeccCC-------CCCCCCCCccccch-hhHHHHHHH-HHHHhhhcCCCCCceeeecCCCCcccCc
Q 013165 77 RSGPYGQIFRPDNFVFGQSG-------AGNNWAKGHYTEGA-ELIDSVLDV-VRKEAENCDCLQGFQVCHSLGGGTGSGM 147 (448)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~-------~gnnwa~G~~~~g~-~~~e~~~d~-ir~~~E~cd~lqgf~i~~sl~GGTGSG~ 147 (448)
+++-.+-+|||+++..-++- ...+|..|.-.... +..+++.|+ ||.++|+||.+||||++.++.+|+| |+
T Consensus 12 WSDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gf 90 (180)
T PF14881_consen 12 WSDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GF 90 (180)
T ss_pred CCCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hH
Confidence 33334556777777655432 22345555432222 234456665 9999999999999999999999987 99
Q ss_pred hHHHHHHHHhhcCCcce-eEEEEecCCCCCC-----cchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCC
Q 013165 148 GTLLISKIREEYPDRMM-MTFSVFPSPKVSD-----TVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPS 221 (448)
Q Consensus 148 ~s~lle~l~d~yp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~ 221 (448)
++.++|+|||||||+.+ +.+++.+...... ...+.+|.++++..|.++|++++|+.... ...+
T Consensus 91 as~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s 159 (180)
T PF14881_consen 91 ASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASS 159 (180)
T ss_pred HHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCC
Confidence 99999999999999996 5555544322111 12456899999999999999999997311 1234
Q ss_pred cccchHHHHHHhhcCcccccC
Q 013165 222 FGDLNHLISATMSGVTCCLRF 242 (448)
Q Consensus 222 ~~~~N~~ia~~i~~~t~~~r~ 242 (448)
..+..+++|.+|.++|.|+|+
T Consensus 160 ~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 160 NWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred cHHHHHHHHHHHHhccccCCC
Confidence 558899999999999999984
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.53 E-value=5.9e-14 Score=139.10 Aligned_cols=206 Identities=18% Similarity=0.291 Sum_probs=157.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccCCCCCCcccceeeCCCCCccccccccCCCc
Q 013165 4 ILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQ 83 (448)
Q Consensus 4 iitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~llvD~e~~~i~~~~~~~~~~ 83 (448)
|..|++|+|||.+-+++-+ +++. + ...+.+.++-..+..+.
T Consensus 14 I~VIGvGg~G~n~v~~m~~-----~~~~-------------------------g---ve~ia~nTD~q~L~~~~------ 54 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIE-----EGVE-------------------------G---VEFIAINTDAQALKSSK------ 54 (338)
T ss_pred EEEEEeCCcchHHHHHHHH-----hhhC-------------------------c---eEEEEeccCHHHHhccc------
Confidence 8899999999999988754 2211 0 11233333333222221
Q ss_pred ccCCCceeeccCCCCCCCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcc
Q 013165 84 IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRM 163 (448)
Q Consensus 84 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~ 163 (448)
-+..+..|+.-...-.+.+....|++..++..+.|++.++..| -++++.++|||||+|.+|.+++.+++ ....
T Consensus 55 --a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~l 127 (338)
T COG0206 55 --ADRKILIGESITRGLGAGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGAL 127 (338)
T ss_pred --cCeEEEeccceeeccCCCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCc
Confidence 1223444544334444556688999999999999999999877 45889999999999999999999999 3778
Q ss_pred eeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCcccccCC
Q 013165 164 MMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP 243 (448)
Q Consensus 164 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 243 (448)
.++++++|+.. |...+.-|+...+..|.+++|.+|+++|+.|.+... ...+ ...|+..|.++++.+.+++..+.-|
T Consensus 128 tvavvt~Pf~~--EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~ 203 (338)
T COG0206 128 TVAVVTLPFSF--EGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKP 203 (338)
T ss_pred EEEEEEecchh--cCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88899999843 445777899999999999999999999999988764 2222 3467888999999999999999999
Q ss_pred CCCccchHhhhhcccc
Q 013165 244 GQLNSDLRKLAVNLIP 259 (448)
Q Consensus 244 ~~~~~~~~~l~~~L~P 259 (448)
|.+|.|+.++.+-+-.
T Consensus 204 glinvDfaDv~~vm~~ 219 (338)
T COG0206 204 GLVNVDFADVRTVMKG 219 (338)
T ss_pred ceEeecHHHHHHHHhc
Confidence 9999999999987665
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.44 E-value=5.4e-14 Score=119.55 Aligned_cols=65 Identities=29% Similarity=0.525 Sum_probs=49.5
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCchhhhcccccccccC----CCCCCcccceeeCCCCCc
Q 013165 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYDGDSELQLERINVYYNEA----SCGRFVPRAVLMDLEPGT 72 (448)
Q Consensus 2 ~Eiitiq~Gq~gnqIG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~----~~~~~~pR~llvD~e~~~ 72 (448)
|||||||+|+.+|+||+||||.| |..+..+. +.+....+++++||++ +..+|+||+|++|++.+.
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~----~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~l 69 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDP----DEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGL 69 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCc----cccCcccCCceEEecccCcCCCeeECCcEEEEecCCCc
Confidence 79999999999999999999977 44332221 1111234789999986 345999999999998863
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.40 E-value=1.3e-07 Score=80.23 Aligned_cols=114 Identities=26% Similarity=0.438 Sum_probs=85.1
Q ss_pred CccchHhhhhcccccCCccccccccccccccccccccccCHHHHHH--hccccCCcccccCCCCCcchhhhccccccCCh
Q 013165 246 LNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQ--QMWDSKNMMCAADPRHGRYLTASAMFRGKMST 323 (448)
Q Consensus 246 ~~~~~~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 323 (448)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++++++..+++.. +++++. ++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 888999998752 34456666766 7888877776655443 666554 6778
Q ss_pred HHHHHHHHhhhcccC-CccccccC-CCcceeeeccCCCCCccceeeecC-ChhhHHHHHHHH
Q 013165 324 KEVDEQMLNVQNKNS-SYFVEWIP-NNVKSTVCDIPPTGLKMASTFIGN-STSIQEMFRRVS 382 (448)
Q Consensus 324 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~s~~~l~N-st~i~~~l~~l~ 382 (448)
.++.+.+..++.+.. ..|+.|.| ..+++. .+.+.++| +|+|..+|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCccccccC
Confidence 889888888876655 78899998 443321 45678999 999999987753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.74 E-value=0.00053 Score=69.58 Aligned_cols=103 Identities=22% Similarity=0.156 Sum_probs=64.0
Q ss_pred ccCCCCCCCCCCccccchhhHHHHHHHHHHHhh----h-----c-CCCCCceeeecCCCCcccCchHHHHHHHHhhc---
Q 013165 93 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE----N-----C-DCLQGFQVCHSLGGGTGSGMGTLLISKIREEY--- 159 (448)
Q Consensus 93 ~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E----~-----c-d~lqgf~i~~sl~GGTGSG~~s~lle~l~d~y--- 159 (448)
...|+|..-+.|.... ....+++.+.|++.++ + . +.-=-++|+.|++||||||+---++-.||+.+
T Consensus 101 ~~~GAgq~R~~GRla~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~ 179 (345)
T PF13809_consen 101 LSAGAGQIRALGRLAF-FSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDILKQP 179 (345)
T ss_pred hhcCCCCcccchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHhhcc
Confidence 3456776666665322 1222344444444444 1 1 00012578899999999999999999999976
Q ss_pred --CCcceeEEEEecCCCCCC---cchhhhHHHHHHHHHhhcc
Q 013165 160 --PDRMMMTFSVFPSPKVSD---TVVEPYNATLSVHQLVENA 196 (448)
Q Consensus 160 --p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~e~s 196 (448)
....+..+.++|....+. .....-|+.-+|.+|.-..
T Consensus 180 ~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~~ 221 (345)
T PF13809_consen 180 GQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYLM 221 (345)
T ss_pred cCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHHh
Confidence 345688889999732221 1344568887777776544
No 34
>PLN02847 triacylglycerol lipase
Probab=70.54 E-value=4.7 Score=43.55 Aligned_cols=63 Identities=25% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHh--hcCCcceeEEE
Q 013165 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE--EYPDRMMMTFS 168 (448)
Q Consensus 102 a~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d--~yp~~~i~~~~ 168 (448)
.+|++...+.+.+.+...|++.++++...+-+++-|||||| +++.+.-.||. .|++...++|+
T Consensus 223 H~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGG----VAALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 223 HCGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGG----TAALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHH----HHHHHHHHHhcCCCCCCceEEEec
Confidence 34665556677777888899999999988888899999876 45656666665 45555444444
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=68.71 E-value=7.5 Score=32.61 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013165 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 111 ~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTG 144 (448)
+-.+++.+++++.+++.+.-+|++|+.++.|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 3456777888899999888999999999999864
No 36
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=66.91 E-value=8.7 Score=33.61 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=41.8
Q ss_pred CccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEE
Q 013165 104 GHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSV 169 (448)
Q Consensus 104 G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v 169 (448)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...+.+.+..++.
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~~~~~f 63 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLVRVYTF 63 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCceEEEEe
Confidence 555556677777777777777777777888889999865 66666667777643343333333
No 37
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=65.38 E-value=5.7 Score=34.14 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013165 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 113 ~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTG 144 (448)
.+...++|+..+++++. +|++++.++ |||-
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp 70 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAE 70 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChH
Confidence 34566899999999999 999999999 7754
No 38
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=61.03 E-value=10 Score=35.64 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=49.5
Q ss_pred CCCCCccccchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCc
Q 013165 100 NWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 178 (448)
Q Consensus 100 nwa~G~~~~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (448)
...+|++.....+.+.+...++...++....+-++.-|||||+ +++.+.-.|+..++...+.++ .+-.+..++.
T Consensus 98 ~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i~~~-tFg~P~vg~~ 171 (229)
T cd00519 98 KVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDVTVY-TFGQPRVGNA 171 (229)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCceEEE-EeCCCCCCCH
Confidence 3456777666777778888888888888877778889999865 677777777777543333333 3333344543
No 39
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=60.94 E-value=9.6 Score=32.87 Aligned_cols=43 Identities=30% Similarity=0.603 Sum_probs=29.9
Q ss_pred CcccCchHHHHHHHHhhcCC-cceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCc
Q 013165 142 GTGSGMGTLLISKIREEYPD-RMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE 198 (448)
Q Consensus 142 GTGSG~~s~lle~l~d~yp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~ 198 (448)
|-|.|+|..+++.||.++|. ..+++... |++-+-.-|..-+|-
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANE 50 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCC
Confidence 44678999999999999998 55655422 666555555555543
No 40
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=60.24 E-value=18 Score=30.47 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCc
Q 013165 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147 (448)
Q Consensus 113 ~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~ 147 (448)
.+++.+++++.+++.+.=+|++|+.++-|||-.-.
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~ 75 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNA 75 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 46677888888888877789999999999986433
No 41
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=60.06 E-value=20 Score=30.33 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCceeeecCCCCcc
Q 013165 113 IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG 144 (448)
Q Consensus 113 ~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTG 144 (448)
.+++.++|++.+++.+.-+|++++.++-|||-
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45677788888888887899999999999875
No 42
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=59.80 E-value=28 Score=31.85 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhhhcCCCCCce-eeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHH
Q 013165 112 LIDSVLDVVRKEAENCDCLQGFQ-VCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVH 190 (448)
Q Consensus 112 ~~e~~~d~ir~~~E~cd~lqgf~-i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 190 (448)
+...+.+.|++.+|+ |+- ++.+.+-|.. -.++-++-.||.+||...+ .+++|+...+..-. -..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W~--~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNWN--EANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcCC--HHHHHHHH
Confidence 444455667777774 432 3334443432 3455566678999996544 56889855443221 13344567
Q ss_pred HHhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccc
Q 013165 191 QLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (448)
Q Consensus 191 ~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (448)
.|.+.||-++++........ ..|..-|+.+...-..+.+-
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~---------~~~~~rn~fMvdhsd~~iav 136 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSP---------GQLQKRNRFMVDHSDGLIAV 136 (177)
T ss_dssp HHHHH-SEEEESSSSB---H---------HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEccCCCCCCH---------HHHHHHhHHHHhCCCeEEEE
Confidence 77888999998876533211 12455677777666655543
No 43
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=53.67 E-value=8.9 Score=32.66 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=39.4
Q ss_pred CCCccccch-hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCC
Q 013165 102 AKGHYTEGA-ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPD 161 (448)
Q Consensus 102 a~G~~~~g~-~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~ 161 (448)
..|++..-. ...+.+.+.|++.+++.....-++.=||+||+ ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345544444 66778888898888887765556677899765 777777777777654
No 44
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=50.12 E-value=46 Score=33.64 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=58.0
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+.++.+.|+..+ +..+||+|+|+.+ |= --++.+++.+-...+|-.+++=+..|....+.........++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--Tm-eeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--TM-AYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--hH-HHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34566666777777655 5689999999776 43 456666776555556666777788887554444445455555
Q ss_pred HHHHHhhccCcceeecchhhhh
Q 013165 188 SVHQLVENADECMVLDNEALYD 209 (448)
Q Consensus 188 sl~~l~e~sd~~i~~~N~~l~~ 209 (448)
.+..-.... .|.++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 444322233 455555556654
No 45
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=42.19 E-value=91 Score=32.42 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|++.++ +..+||+|+|+.+ |= -.++..+..+-+..|+-.+++=+..|....+.......-.++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--TM-~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--TM-AYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--hH-HHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345566677777777775 3579999999776 53 455555555444446666777778887543333333333333
Q ss_pred HHHHHhhccCcceeecch
Q 013165 188 SVHQLVENADECMVLDNE 205 (448)
Q Consensus 188 sl~~l~e~sd~~i~~~N~ 205 (448)
.+..- ..+-..++|++.
T Consensus 195 ~~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS-PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC-CCCcEEEEECCc
Confidence 33332 445566667664
No 46
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=41.22 E-value=28 Score=32.90 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=22.3
Q ss_pred eeecCCCCcccCchHHHHHHHHhhcCCc
Q 013165 135 VCHSLGGGTGSGMGTLLISKIREEYPDR 162 (448)
Q Consensus 135 i~~sl~GGTGSG~~s~lle~l~d~yp~~ 162 (448)
++-+++||+|||=++ +++.|.+.++..
T Consensus 9 iiIgIaG~SgSGKTT-va~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTT-VAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHhCcC
Confidence 566899999999855 889999999855
No 47
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=40.51 E-value=81 Score=31.66 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|++.+++ .+||+|+|+.+ |= --++..+..+-+. +|-.+++=+..|....+.........++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--Tm-eeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--TM-EETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--cH-HHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3455666777777776663 89999999766 43 3455555544444 6666777778887554444455555555
Q ss_pred HHHHHhh--ccCcceeecchhhhh
Q 013165 188 SVHQLVE--NADECMVLDNEALYD 209 (448)
Q Consensus 188 sl~~l~e--~sd~~i~~~N~~l~~ 209 (448)
.+....+ .....|+| |+.++.
T Consensus 133 ~~A~~~~~~~~gV~V~f-~~~i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVF-NDRIFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEE-CCEEec
Confidence 5544332 33455555 454554
No 48
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=40.08 E-value=79 Score=31.56 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=48.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+.++.+.|++.+++ .+||+|+|+.. |= -.++.++..+-+..+|-.+++=+..|....+.......-.++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--Tm-e~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--TM-EETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--TH-HHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--HH-HHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3456666777777777744 99999999776 42 334445555545445666777788887543333333333333
Q ss_pred HHHHHhhccCcceeecchhhhh
Q 013165 188 SVHQLVENADECMVLDNEALYD 209 (448)
Q Consensus 188 sl~~l~e~sd~~i~~~N~~l~~ 209 (448)
.+..-.+ .-.|+++-|+.++.
T Consensus 128 ~~A~~~~-~~GV~v~f~~~i~~ 148 (313)
T PF00710_consen 128 RVAASPA-GPGVLVVFNGRIYA 148 (313)
T ss_dssp HHHHSGG-TSSEEEEETTEEEE
T ss_pred HHHhccc-CCceEEEeCCCccc
Confidence 3333333 34455554555654
No 49
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.01 E-value=28 Score=29.92 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhcCC-CCCceeeecCCCCcccCchH-HHHHHHHh
Q 013165 113 IDSVLDVVRKEAENCDC-LQGFQVCHSLGGGTGSGMGT-LLISKIRE 157 (448)
Q Consensus 113 ~e~~~d~ir~~~E~cd~-lqgf~i~~sl~GGTGSG~~s-~lle~l~d 157 (448)
...+.++|++.+|+++. =+|++++.++ |||= +.. ..++.++.
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~--~n~e~a~~~l~~ 84 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSAV--MNAEMAVELLED 84 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCcH--hHHHHHHHHhcc
Confidence 34566888999999966 8999999999 6632 222 34555543
No 50
>PLN02408 phospholipase A1
Probab=38.22 E-value=61 Score=33.21 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCc
Q 013165 111 ELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 178 (448)
Q Consensus 111 ~~~e~~~d~ir~~~E~cd~--lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (448)
.+.+.+.+.|++.+++... +.-.+.-|||||. ++...+-.|+..++..+.+.+..+-.+..|+.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsPRVGN~ 244 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGPRVGNR 244 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCCCcccH
Confidence 4677788888888887754 3345667799765 78877888888887665555555556566664
No 51
>PRK13660 hypothetical protein; Provisional
Probab=35.62 E-value=1.5e+02 Score=27.27 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHH
Q 013165 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (448)
Q Consensus 112 ~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (448)
+...+...|++.+|+ .+.=| +.|.+=|+- =.++-++-.||.+||...+ .+++|+...++.-. -..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~wf--i~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~--e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWV--IISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENWN--EANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEE--EECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCC--HHHHHHHHH
Confidence 344455666777773 33322 222221111 2345566779999996544 45788854443211 122234556
Q ss_pred HhhccCcceeecchhhhhhhccccCCCCCCcccchHHHHHHhhcCccc
Q 013165 192 LVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCC 239 (448)
Q Consensus 192 l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 239 (448)
+.+.||-++.+....-. ....|..-|+.+...-..+.+-
T Consensus 98 i~~~aD~v~~vs~~~y~---------~p~q~~~rn~fmv~~sd~~i~~ 136 (182)
T PRK13660 98 ILKQADFVKSISKRPYE---------SPAQFRQYNQFMLEHTDGALLV 136 (182)
T ss_pred HHHhCCEEEEecCCCCC---------ChHHHHHHHHHHHHccCeEEEE
Confidence 77889999988543210 0112666788877766665543
No 52
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=35.08 E-value=1.1e+02 Score=31.95 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|++.++. ..+||+|+|+.+ |= -.++..+..+- ..|+-.+++=+..|....+.......-+++
T Consensus 133 mtp~~W~~La~~I~~~~~~--~~dGvVVtHGTD--TM-~yTA~aLs~~l-~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 206 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN--GADGVVVAHGTD--TM-HYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICAV 206 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc--cCCeEEEecCCc--hH-HHHHHHHHHhc-CCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 3456667777888887763 589999999776 54 44455555433 446666777778887543333333333333
Q ss_pred HHHHHhhccCcceeecch
Q 013165 188 SVHQLVENADECMVLDNE 205 (448)
Q Consensus 188 sl~~l~e~sd~~i~~~N~ 205 (448)
.+.. ...+...++|++.
T Consensus 207 ~~A~-~~~~gV~Vvf~g~ 223 (419)
T PRK04183 207 LAAT-SDIAEVVVVMHGT 223 (419)
T ss_pred HHHh-CCCCcEEEEECCc
Confidence 3333 3345566667654
No 53
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=32.55 E-value=1e+02 Score=31.11 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=58.6
Q ss_pred cchhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHH
Q 013165 108 EGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187 (448)
Q Consensus 108 ~g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~l 187 (448)
...+.+..+.+.|++..+ ..+||+|+|+.+ |= -.++..+..+-+. +|-.+++=+..|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~---~~dG~VVtHGTD--Tm-e~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYD---DYDGFVITHGTD--TM-AYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHh---cCCeEEEccCCc--hH-HHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 345666677777777666 389999999776 43 4555566654444 6666777788887554444455555555
Q ss_pred HHHHHhhc-----cCcceeecchhhhhh
Q 013165 188 SVHQLVEN-----ADECMVLDNEALYDI 210 (448)
Q Consensus 188 sl~~l~e~-----sd~~i~~~N~~l~~~ 210 (448)
.+....+. -..++++=|+.+++.
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEeec
Confidence 55443331 224556667777653
No 54
>PTZ00489 glutamate 5-kinase; Provisional
Probab=31.88 E-value=1.9e+02 Score=28.18 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHHHHHhhccCcceeecch
Q 013165 155 IREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205 (448)
Q Consensus 155 l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~ 205 (448)
..+.|.+..+.+..+++....-....+..|+.-++..|.+. .+||+=|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44455444555666666533223344556888889999886 56777444
No 55
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=31.61 E-value=1.6e+02 Score=22.81 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhc--CCCCCceeeecCC----CCcccCchHHHHHHHHhhcCCcceeEEEEec
Q 013165 114 DSVLDVVRKEAENC--DCLQGFQVCHSLG----GGTGSGMGTLLISKIREEYPDRMMMTFSVFP 171 (448)
Q Consensus 114 e~~~d~ir~~~E~c--d~lqgf~i~~sl~----GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P 171 (448)
++....++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~ 69 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecC
Confidence 34455666666655 3567888999888 553 8888888887766666666654433
No 56
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=30.65 E-value=1.4e+02 Score=29.89 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHH
Q 013165 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLS 188 (448)
Q Consensus 109 g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 188 (448)
..+.+..+.+.|+..+. -+..+||+|+|+.+ |= -.++.++..+-+..+|-.+++=+..|....+.........++.
T Consensus 58 t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--Tm-eeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALA-DDGYDGVVVTHGTD--TL-EETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--cH-HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 34445555555555443 25789999999776 43 3455555554444466667777788875444434444444444
Q ss_pred HHHHhh--ccCcceeecchhhhh
Q 013165 189 VHQLVE--NADECMVLDNEALYD 209 (448)
Q Consensus 189 l~~l~e--~sd~~i~~~N~~l~~ 209 (448)
+..-.+ .. .|+++=|+.++.
T Consensus 134 ~A~~~~a~~~-GV~V~f~~~i~~ 155 (323)
T smart00870 134 VAASPEARGR-GVLVVFNDEIHR 155 (323)
T ss_pred HHcCcccCCC-EEEEEECCEeee
Confidence 433222 22 344444666654
No 57
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=30.19 E-value=27 Score=33.99 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHH
Q 013165 115 SVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISK 154 (448)
Q Consensus 115 ~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~ 154 (448)
++++++|+.+++-..+ +|+|.|+|++++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6789999999976555 5677889999887754
No 58
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=29.77 E-value=1.1e+02 Score=26.96 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeE
Q 013165 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMT 166 (448)
Q Consensus 109 g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~ 166 (448)
+....+.+.+.+...++.-|+=+|++|+.++-|||-+-.+++++ .+.|...+++
T Consensus 38 ~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~----~~~~~~~via 91 (143)
T COG2893 38 GEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLA----MEGPRVEVIA 91 (143)
T ss_pred CCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHH----hhCCCceEEe
Confidence 33444556666677777777779999999999998766666555 5666544443
No 59
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.87 E-value=85 Score=31.56 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCc
Q 013165 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGM 147 (448)
Q Consensus 112 ~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~ 147 (448)
-.+++.+++++.+++.+.-+|++|+.++-|||-.-.
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~ 76 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNA 76 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHH
Confidence 346677888888888877789999999999986443
No 60
>PF03283 PAE: Pectinacetylesterase
Probab=25.00 E-value=1.3e+02 Score=30.77 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=33.7
Q ss_pred ccccchhhHHHHHHHHHHH-hhhcCCCCCceeeecCCCCcccCchHHH-HHHHHhhcCC
Q 013165 105 HYTEGAELIDSVLDVVRKE-AENCDCLQGFQVCHSLGGGTGSGMGTLL-ISKIREEYPD 161 (448)
Q Consensus 105 ~~~~g~~~~e~~~d~ir~~-~E~cd~lqgf~i~~sl~GGTGSG~~s~l-le~l~d~yp~ 161 (448)
.+-.|....+.+++.|... +.+. +-+++.-+.+||. |+.+ ++.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~a---~~vlltG~SAGG~----g~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPNA---KQVLLTGCSAGGL----GAILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCccc---ceEEEeccChHHH----HHHHHHHHHHHHhcc
Confidence 3446788888888877666 4443 3346666666664 4444 8899999995
No 61
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=24.63 E-value=39 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHh--cccccccccccCCCCChh
Q 013165 374 IQEMFRRVSEQFTAM--FRRKAFLHWYTGEGMDEM 406 (448)
Q Consensus 374 i~~~l~~l~~~~~~m--~~kkAflH~Y~~~Gmee~ 406 (448)
|+..+.+|.+-+..- |..-.||+||+.++.||+
T Consensus 97 vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe 131 (167)
T COG1528 97 VTSSINELAEVAREEKDYATFNFLQWFVAEQVEEE 131 (167)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 444444444444333 356789999999988654
No 62
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=24.19 E-value=34 Score=16.53 Aligned_cols=8 Identities=75% Similarity=1.427 Sum_probs=5.8
Q ss_pred hcccccCC
Q 013165 255 VNLIPFPR 262 (448)
Q Consensus 255 ~~L~P~p~ 262 (448)
+.|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 45788887
No 63
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=22.52 E-value=39 Score=34.48 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=18.9
Q ss_pred HHHhhhcCCCCCceeeecCCCCcccCch
Q 013165 121 RKEAENCDCLQGFQVCHSLGGGTGSGMG 148 (448)
Q Consensus 121 r~~~E~cd~lqgf~i~~sl~GGTGSG~~ 148 (448)
.+.+++.+.|.|| +.+-|||||||++
T Consensus 477 nRLaaEItrLRtl--ltgdGgGtGspla 502 (593)
T KOG4807|consen 477 NRLAAEITRLRTL--LTGDGGGTGSPLA 502 (593)
T ss_pred hHHHHHHHHHHHH--hccCCCCCCCccc
Confidence 4556677777765 4678889999875
No 64
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=22.31 E-value=3.1e+02 Score=28.97 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCC---CCcchhhhHHHHH
Q 013165 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV---SDTVVEPYNATLS 188 (448)
Q Consensus 112 ~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~---~~~~~~~yN~~ls 188 (448)
..+...+.|+..+..-..+.++-|+.+.+.|+|+.+.+.+++.|- ..++.....|.... ...+..+.+..|.
T Consensus 158 ~~~~Y~~~i~~~~~~~~~~~~lkVv~d~~nGaa~~~~~~ll~~lG-----~~vv~~~~~pDg~fp~~~p~p~~~~~~~l~ 232 (464)
T COG1109 158 ALDRYIEFIKSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELG-----AEVVSINCDPDGLFPNINPNPGETELLDLA 232 (464)
T ss_pred hHHHHHHHHHHhcccccccCCcEEEEECCCCchhHHHHHHHHHcC-----CEEEEecCCCCCCCCCCCCCCCCccHHHHH
Confidence 555666666666654346778899999999988788777776644 33444444443221 1233334444333
Q ss_pred HHHHhhccCcceeecchhh
Q 013165 189 VHQLVENADECMVLDNEAL 207 (448)
Q Consensus 189 l~~l~e~sd~~i~~~N~~l 207 (448)
..-....+|+.+-+|.|+=
T Consensus 233 ~~v~~~~aDlgia~DgDaD 251 (464)
T COG1109 233 KAVKEHGADLGIAFDGDAD 251 (464)
T ss_pred HHHHhcCCCEEEEecCCCc
Confidence 3222336899999998874
No 65
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.24 E-value=2.2e+02 Score=27.84 Aligned_cols=76 Identities=26% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHHHHhhhcCCCCCceeeecCCCCcccCch-----HHHHHHHHhhcCCcce-eEEEEecCCCCCCcchhhhHHHHHHHH
Q 013165 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMG-----TLLISKIREEYPDRMM-MTFSVFPSPKVSDTVVEPYNATLSVHQ 191 (448)
Q Consensus 118 d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~-----s~lle~l~d~yp~~~i-~~~~v~P~~~~~~~~~~~yN~~lsl~~ 191 (448)
++|++.++.+ +||.-+-|+.|-||.-.. ..+++.+|.-- ++++ ..|.|- +.-....
T Consensus 161 ~rl~~i~~~a---~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs--------------~~e~~~~ 222 (265)
T COG0159 161 ERLKKIAEAA---SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGIS--------------SPEQAAQ 222 (265)
T ss_pred HHHHHHHHhC---CCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcC--------------CHHHHHH
Confidence 5666777765 799999999999997554 55677777754 4443 333331 1113456
Q ss_pred HhhccCcceeecchhhhhhhcc
Q 013165 192 LVENADECMVLDNEALYDICFR 213 (448)
Q Consensus 192 l~e~sd~~i~~~N~~l~~~~~~ 213 (448)
+.+.+|++|+ -+++-++..+
T Consensus 223 v~~~ADGVIV--GSAiV~~i~~ 242 (265)
T COG0159 223 VAEAADGVIV--GSAIVKIIEE 242 (265)
T ss_pred HHHhCCeEEE--cHHHHHHHHh
Confidence 6777999987 3455554433
No 66
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=22.20 E-value=1.3e+02 Score=30.66 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhhHHHHHH
Q 013165 110 AELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSV 189 (448)
Q Consensus 110 ~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl 189 (448)
.++.+++...|+.+.|....--|..+..-.++|.+.|+|.-|+-.+.-++ .|. ++..=.++-|
T Consensus 216 ~~~v~~lD~~l~hfa~~~~~~~g~~v~~~pGaGAAGGmga~L~~~~~a~l----------~~G-------i~iV~~~~~l 278 (378)
T COG1929 216 PEMVEELDQALSHFAEVLEQATGKDVIDVPGAGAAGGMGAGLLAFLQAEL----------KSG-------IEIVLEATNL 278 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCCCccchhHHHHHHHHhhCcc----------ccc-------HHHHHHHhCH
Confidence 57888888899999998887778888888888989999999987766432 232 3334556678
Q ss_pred HHHhhccCccee----ecchhhh
Q 013165 190 HQLVENADECMV----LDNEALY 208 (448)
Q Consensus 190 ~~l~e~sd~~i~----~~N~~l~ 208 (448)
....+-+|+||. +|++++.
T Consensus 279 e~~v~daDLVITGEGr~D~Qs~~ 301 (378)
T COG1929 279 EDAVKDADLVITGEGRIDSQSLH 301 (378)
T ss_pred HHhhccCCEEEeCCCcccccccC
Confidence 888899999997 6777664
No 67
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.08 E-value=1e+02 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=18.8
Q ss_pred ccCchHHHHHHHHhhcCCccee
Q 013165 144 GSGMGTLLISKIREEYPDRMMM 165 (448)
Q Consensus 144 GSG~~s~lle~l~d~yp~~~i~ 165 (448)
|-|+|+.|+..+.+.++++.+.
T Consensus 40 g~Gig~~ll~~~~~~~~~~~i~ 61 (79)
T PF13508_consen 40 GKGIGSKLLNYLLEKAKSKKIF 61 (79)
T ss_dssp TSSHHHHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCcEE
Confidence 4589999999999999877664
No 68
>PLN02802 triacylglycerol lipase
Probab=21.72 E-value=1.6e+02 Score=31.54 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHhhhcCC--CCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCc
Q 013165 111 ELIDSVLDVVRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 178 (448)
Q Consensus 111 ~~~e~~~d~ir~~~E~cd~--lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~ 178 (448)
.+.+.+++.|++.+++... ++-++.-|||||+ ++...+-.|+...+....+.+..|-.+..|+.
T Consensus 309 S~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGA----LAtLaA~dL~~~~~~~~pV~vyTFGsPRVGN~ 374 (509)
T PLN02802 309 SLSESVVGEVRRLMEKYKGEELSITVTGHSLGAA----LALLVADELATCVPAAPPVAVFSFGGPRVGNR 374 (509)
T ss_pred hHHHHHHHHHHHHHHhCCCCcceEEEeccchHHH----HHHHHHHHHHHhCCCCCceEEEEcCCCCcccH
Confidence 4567788889999887642 4446677899765 77777777877766542333444545555654
No 69
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=20.98 E-value=2.4e+02 Score=20.91 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=24.8
Q ss_pred CCCCCc-eeeecCCCCcccCchHH--HHHHHHhhcCCcceeEE
Q 013165 128 DCLQGF-QVCHSLGGGTGSGMGTL--LISKIREEYPDRMMMTF 167 (448)
Q Consensus 128 d~lqgf-~i~~sl~GGTGSG~~s~--lle~l~d~yp~~~i~~~ 167 (448)
-++.+. +++.++.|..|=.+... |.+.+|..|++++++.+
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 455554 45679998877655554 58889999999987653
No 70
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=20.89 E-value=69 Score=20.39 Aligned_cols=13 Identities=46% Similarity=0.948 Sum_probs=7.9
Q ss_pred CCCcccCchHHHHH
Q 013165 140 GGGTGSGMGTLLIS 153 (448)
Q Consensus 140 ~GGTGSG~~s~lle 153 (448)
..|+|||+ +.+.+
T Consensus 11 tSGSGSG~-p~Lvq 23 (30)
T smart00467 11 TSGSGSGL-PLLVQ 23 (30)
T ss_pred cCCCCCCc-hhHHH
Confidence 45678887 44443
No 71
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.64 E-value=46 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.4
Q ss_pred CCceeeecCCCCcccCchHHHHHHHHh
Q 013165 131 QGFQVCHSLGGGTGSGMGTLLISKIRE 157 (448)
Q Consensus 131 qgf~i~~sl~GGTGSG~~s~lle~l~d 157 (448)
.+|-|+.+...|+|+.+.+.|++.+.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 467899988888888888877776655
No 72
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.52 E-value=3.2e+02 Score=24.74 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=55.8
Q ss_pred chhhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcc---cCchHHHHHHHHhhcCC-cceeEEEEecCCCCCCcchhhhH
Q 013165 109 GAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTG---SGMGTLLISKIREEYPD-RMMMTFSVFPSPKVSDTVVEPYN 184 (448)
Q Consensus 109 g~~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTG---SG~~s~lle~l~d~yp~-~~i~~~~v~P~~~~~~~~~~~yN 184 (448)
..+..+.+.+.+.+.+++ -.++|+.|-.--.+..+ .---..+++.||+.+++ ..++++++-|......
T Consensus 85 ~~~~~~~f~~~~~~~v~~-~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~------- 156 (210)
T cd00598 85 DPASRAAFANSLVSFLKT-YGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLG------- 156 (210)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhh-------
Confidence 344556667777777766 47999988654433322 12234578889999987 4677776655421111
Q ss_pred HHHHHHHHhhccCcceeecch
Q 013165 185 ATLSVHQLVENADECMVLDNE 205 (448)
Q Consensus 185 ~~lsl~~l~e~sd~~i~~~N~ 205 (448)
...-+..+.+++|.+.+..-+
T Consensus 157 ~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 157 YAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred ccCCHHHHHhhCCEEEEeeec
Confidence 023467888999999887655
No 73
>PLN02371 phosphoglucosamine mutase family protein
Probab=20.49 E-value=4.2e+02 Score=28.92 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=42.7
Q ss_pred CCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCC---CCcchhhhHHHHHHHHHh-hccCcceeecc
Q 013165 129 CLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV---SDTVVEPYNATLSVHQLV-ENADECMVLDN 204 (448)
Q Consensus 129 ~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~---~~~~~~~yN~~lsl~~l~-e~sd~~i~~~N 204 (448)
.++++-|+.+.+.|+|+++.+.+++.|--+ .+...-.-|.... ...+..+.|--....... ..+|+.|.+|-
T Consensus 260 ~~~~lkIvvD~~nGag~~~~~~lL~~LG~~----v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~Dg 335 (583)
T PLN02371 260 PLEGFKIVVDAGNGAGGFFAEKVLEPLGAD----TSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDT 335 (583)
T ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCC----eEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 357999999999999999998888776332 1212212222111 111222333333333333 34899999997
Q ss_pred hh
Q 013165 205 EA 206 (448)
Q Consensus 205 ~~ 206 (448)
|+
T Consensus 336 Da 337 (583)
T PLN02371 336 DV 337 (583)
T ss_pred Cc
Confidence 76
No 74
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=20.45 E-value=1.7e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.487 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHHHHHhc--ccccccccccCCCCC
Q 013165 370 NSTSIQEMFRRVSEQFTAMF--RRKAFLHWYTGEGMD 404 (448)
Q Consensus 370 Nst~i~~~l~~l~~~~~~m~--~kkAflH~Y~~~Gme 404 (448)
+...+...|++++..+.-+| .++ .||+++ |-.
T Consensus 12 ~~~~~~~~Ln~~lAd~~~Ly~k~~~--~HWnV~-G~~ 45 (156)
T COG0783 12 DRKKIAEALNQLLADLYVLYLKTHN--YHWNVK-GPN 45 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--ccccee-Ccc
Confidence 44779999999999999988 566 999996 655
No 75
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=20.12 E-value=4.9e+02 Score=27.29 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCC---CcchhhhHHHHH
Q 013165 112 LIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVS---DTVVEPYNATLS 188 (448)
Q Consensus 112 ~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~---~~~~~~yN~~ls 188 (448)
+.+...+.|.+.+. .+.++++-|+.+.+.|+|+++.+.|++.|+.-=-...+++.---|..... -.+..+.|--..
T Consensus 151 ~~~~Yi~~l~~~id-~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYIN-VKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhcc-cccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 44555666655552 23457999999999999999999886655553111122222222321111 112223332222
Q ss_pred HHHH-hhccCcceeecchh
Q 013165 189 VHQL-VENADECMVLDNEA 206 (448)
Q Consensus 189 l~~l-~e~sd~~i~~~N~~ 206 (448)
.... ...+|+.|.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 23479999998775
No 76
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=20.10 E-value=4.1e+02 Score=27.79 Aligned_cols=90 Identities=12% Similarity=0.243 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCceeeecCCCCcccCchHHHHHHHHhhcCCcceeEEEEecCCCCCCcchhhh--HHHHH
Q 013165 111 ELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPY--NATLS 188 (448)
Q Consensus 111 ~~~e~~~d~ir~~~E~cd~lqgf~i~~sl~GGTGSG~~s~lle~l~d~yp~~~i~~~~v~P~~~~~~~~~~~y--N~~ls 188 (448)
++.+...+.|.+.++- ..++++-|+.+.+.|+|+++.+.+++.|- ..++..--.|..........|- -.+-.
T Consensus 144 ~~~~~Y~~~l~~~i~~-~~i~~lkVvvd~~~Ga~~~~~~~ll~~lg-----~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~ 217 (445)
T PRK09542 144 DVLADYAAFLRSLVDL-SGIRPLKVAVDAGNGMGGHTVPAVLGGLP-----ITLLPLYFELDGTFPNHEANPLDPANLVD 217 (445)
T ss_pred ChHHHHHHHHHHhccc-ccCCCCEEEEECCCCchhHHHHHHHHhCC-----CEEEEEecCcCCCCCCCCcCCCCHHHHHH
Confidence 4455555666555421 23579999999999999888888887542 2222222223221111111111 11223
Q ss_pred HHHHh--hccCcceeecchh
Q 013165 189 VHQLV--ENADECMVLDNEA 206 (448)
Q Consensus 189 l~~l~--e~sd~~i~~~N~~ 206 (448)
+..+. ..+|+.|.+|-|+
T Consensus 218 l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 218 LQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 33322 2389999998776
Done!