Query 013166
Match_columns 448
No_of_seqs 217 out of 743
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 01:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12498 bZIP_C: Basic leucine 99.9 6.4E-28 1.4E-32 211.0 7.3 114 301-427 1-114 (115)
2 smart00338 BRLZ basic region l 99.3 1.1E-11 2.3E-16 97.7 9.4 62 231-292 2-63 (65)
3 PF00170 bZIP_1: bZIP transcri 99.3 2.4E-11 5.1E-16 95.6 9.2 61 232-292 3-63 (64)
4 KOG4005 Transcription factor X 99.2 7.6E-11 1.7E-15 114.8 12.0 79 232-310 67-145 (292)
5 KOG4343 bZIP transcription fac 99.2 3E-11 6.6E-16 127.7 7.9 70 227-296 274-343 (655)
6 PF07716 bZIP_2: Basic region 99.0 3.6E-09 7.8E-14 81.0 8.8 51 232-283 3-53 (54)
7 KOG0709 CREB/ATF family transc 99.0 1E-09 2.2E-14 115.0 6.9 73 230-309 247-319 (472)
8 KOG3584 cAMP response element 98.9 1.9E-09 4E-14 107.7 6.9 58 229-286 286-343 (348)
9 KOG0837 Transcriptional activa 98.0 1.7E-05 3.7E-10 78.7 8.5 49 232-280 203-252 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.0 1.2E-07 2.6E-12 79.9 -6.0 59 231-289 27-85 (92)
11 KOG4196 bZIP transcription fac 97.0 0.0065 1.4E-07 55.3 9.8 65 232-310 51-115 (135)
12 KOG4571 Activating transcripti 96.8 0.017 3.6E-07 58.7 12.6 52 232-283 224-276 (294)
13 KOG3119 Basic region leucine z 96.7 0.0069 1.5E-07 60.5 8.6 45 236-280 196-240 (269)
14 PF06005 DUF904: Protein of un 96.4 0.052 1.1E-06 44.7 10.6 61 255-315 4-64 (72)
15 KOG3863 bZIP transcription fac 96.3 0.0084 1.8E-07 65.9 6.6 64 235-305 491-554 (604)
16 TIGR02449 conserved hypothetic 96.2 0.048 1E-06 44.4 9.3 61 257-320 2-62 (65)
17 PRK10884 SH3 domain-containing 95.8 0.11 2.4E-06 50.4 11.3 63 255-317 100-166 (206)
18 TIGR02894 DNA_bind_RsfA transc 95.8 0.079 1.7E-06 49.9 9.9 57 263-319 98-154 (161)
19 PF07989 Microtub_assoc: Micro 95.4 0.16 3.4E-06 42.1 9.3 61 257-317 2-70 (75)
20 PF06156 DUF972: Protein of un 95.4 0.097 2.1E-06 46.1 8.5 53 259-311 5-57 (107)
21 PF02183 HALZ: Homeobox associ 95.3 0.051 1.1E-06 41.1 5.6 42 266-307 2-43 (45)
22 TIGR02449 conserved hypothetic 94.8 0.27 5.8E-06 40.1 8.7 57 255-311 7-63 (65)
23 PRK13169 DNA replication intia 94.7 0.2 4.4E-06 44.5 8.5 51 259-309 5-55 (110)
24 PF14197 Cep57_CLD_2: Centroso 94.6 0.35 7.5E-06 39.6 9.0 55 254-308 11-65 (69)
25 PF08614 ATG16: Autophagy prot 94.6 0.28 6E-06 46.4 9.7 68 232-299 114-181 (194)
26 PF07888 CALCOCO1: Calcium bin 94.5 0.69 1.5E-05 50.9 13.8 83 234-316 150-232 (546)
27 PF06156 DUF972: Protein of un 94.5 0.19 4.1E-06 44.3 7.9 50 255-304 8-57 (107)
28 PF06005 DUF904: Protein of un 94.4 0.64 1.4E-05 38.4 10.3 54 256-309 12-65 (72)
29 COG3074 Uncharacterized protei 94.4 0.3 6.6E-06 40.6 8.2 53 256-308 19-71 (79)
30 PRK13729 conjugal transfer pil 94.3 0.1 2.2E-06 56.3 6.9 48 255-302 76-123 (475)
31 PRK13169 DNA replication intia 94.3 0.22 4.8E-06 44.2 7.8 50 255-304 8-57 (110)
32 COG4467 Regulator of replicati 94.2 0.17 3.6E-06 45.1 6.9 50 259-308 5-54 (114)
33 PF04899 MbeD_MobD: MbeD/MobD 93.6 1.1 2.3E-05 37.1 10.0 60 258-317 10-69 (70)
34 PRK10884 SH3 domain-containing 93.6 1.3 2.8E-05 43.1 12.3 52 255-306 118-169 (206)
35 PRK11637 AmiB activator; Provi 93.5 1.6 3.4E-05 45.9 13.8 57 249-305 69-125 (428)
36 PF08614 ATG16: Autophagy prot 93.0 2 4.4E-05 40.7 12.5 69 254-322 108-176 (194)
37 PF11559 ADIP: Afadin- and alp 93.0 2.7 5.9E-05 38.0 12.8 75 235-316 46-120 (151)
38 PF11559 ADIP: Afadin- and alp 93.0 3.7 8.1E-05 37.1 13.7 68 249-316 46-113 (151)
39 PRK15422 septal ring assembly 92.6 1.6 3.4E-05 37.0 9.8 38 257-294 6-43 (79)
40 PRK11637 AmiB activator; Provi 92.3 2.2 4.7E-05 44.9 12.8 72 242-313 55-126 (428)
41 PF11932 DUF3450: Protein of u 92.2 2.4 5.2E-05 41.5 12.2 17 261-277 62-78 (251)
42 PRK15422 septal ring assembly 92.0 1.2 2.5E-05 37.8 8.3 52 256-307 19-70 (79)
43 COG1579 Zn-ribbon protein, pos 91.6 4.9 0.00011 40.2 13.6 52 233-284 30-81 (239)
44 COG2433 Uncharacterized conser 91.6 2.3 5E-05 47.5 12.3 83 254-336 435-522 (652)
45 PF07106 TBPIP: Tat binding pr 91.5 1.4 3.1E-05 40.6 9.2 49 255-303 86-136 (169)
46 PF12718 Tropomyosin_1: Tropom 91.1 2.2 4.8E-05 39.1 10.0 19 297-315 73-91 (143)
47 PF13851 GAS: Growth-arrest sp 91.1 7.1 0.00015 37.7 13.9 58 232-289 70-127 (201)
48 TIGR03752 conj_TIGR03752 integ 90.8 1.5 3.2E-05 47.6 9.8 61 256-316 74-135 (472)
49 COG4026 Uncharacterized protei 90.7 2.6 5.7E-05 42.2 10.6 50 257-306 144-193 (290)
50 PF14197 Cep57_CLD_2: Centroso 90.6 2 4.3E-05 35.2 8.2 52 267-318 3-54 (69)
51 COG4026 Uncharacterized protei 90.5 1.9 4.2E-05 43.1 9.6 64 253-316 133-196 (290)
52 PF09304 Cortex-I_coil: Cortex 90.5 4 8.7E-05 36.4 10.6 57 234-290 16-72 (107)
53 PF02403 Seryl_tRNA_N: Seryl-t 90.5 5.1 0.00011 34.1 11.1 77 238-314 6-98 (108)
54 PF11932 DUF3450: Protein of u 90.2 5.3 0.00012 39.1 12.4 22 258-279 45-66 (251)
55 COG3883 Uncharacterized protei 90.1 2.6 5.6E-05 42.8 10.3 62 250-311 33-94 (265)
56 PF06785 UPF0242: Uncharacteri 90.1 1.6 3.4E-05 45.8 8.8 56 249-304 121-176 (401)
57 PF04849 HAP1_N: HAP1 N-termin 90.0 2.3 5.1E-05 43.9 10.1 60 258-317 244-303 (306)
58 PF13747 DUF4164: Domain of un 89.8 8.6 0.00019 32.8 11.8 71 232-302 9-79 (89)
59 PF12325 TMF_TATA_bd: TATA ele 89.7 4.1 8.9E-05 36.7 10.2 14 290-303 96-109 (120)
60 PF05266 DUF724: Protein of un 89.5 7.7 0.00017 37.4 12.6 60 232-291 87-146 (190)
61 TIGR03495 phage_LysB phage lys 89.4 5.4 0.00012 36.8 10.9 72 257-328 28-99 (135)
62 PF09726 Macoilin: Transmembra 89.2 6.7 0.00014 44.6 13.7 37 260-296 543-579 (697)
63 KOG4005 Transcription factor X 88.8 5.8 0.00013 40.1 11.4 75 231-308 70-150 (292)
64 PF10186 Atg14: UV radiation r 88.8 13 0.00027 36.2 13.8 12 296-307 125-136 (302)
65 PRK09039 hypothetical protein; 88.7 5.3 0.00012 41.4 11.7 60 258-317 133-193 (343)
66 PF12808 Mto2_bdg: Micro-tubul 88.6 1.1 2.4E-05 35.1 5.1 50 252-304 1-50 (52)
67 PF10224 DUF2205: Predicted co 88.5 3.2 6.8E-05 35.2 8.1 45 258-302 19-63 (80)
68 PF02183 HALZ: Homeobox associ 88.4 1.9 4.2E-05 32.6 6.1 39 273-311 2-40 (45)
69 PF07106 TBPIP: Tat binding pr 88.3 2.7 5.8E-05 38.8 8.4 51 257-307 81-133 (169)
70 PF14662 CCDC155: Coiled-coil 88.2 3.6 7.8E-05 40.0 9.3 50 259-308 5-54 (193)
71 PF04880 NUDE_C: NUDE protein, 88.1 0.84 1.8E-05 43.3 4.9 46 257-306 2-47 (166)
72 PF10805 DUF2730: Protein of u 87.8 5.5 0.00012 34.7 9.5 61 253-313 33-95 (106)
73 PF04111 APG6: Autophagy prote 87.8 14 0.0003 38.0 13.8 69 252-320 61-136 (314)
74 PF15070 GOLGA2L5: Putative go 87.8 8.9 0.00019 43.0 13.4 56 240-295 107-186 (617)
75 KOG1962 B-cell receptor-associ 87.7 4.2 9E-05 40.2 9.6 60 267-326 149-208 (216)
76 PF12329 TMF_DNA_bd: TATA elem 87.5 8.3 0.00018 31.8 9.9 60 258-317 8-67 (74)
77 PF08647 BRE1: BRE1 E3 ubiquit 87.5 17 0.00037 31.1 12.2 76 236-311 5-83 (96)
78 TIGR00219 mreC rod shape-deter 87.2 2.2 4.8E-05 43.1 7.6 35 263-297 67-105 (283)
79 PRK04406 hypothetical protein; 86.8 5.5 0.00012 33.1 8.5 44 259-302 8-51 (75)
80 COG4467 Regulator of replicati 86.8 2.6 5.6E-05 37.8 6.9 47 255-301 8-54 (114)
81 PF07888 CALCOCO1: Calcium bin 86.8 52 0.0011 36.8 18.2 30 238-267 354-383 (546)
82 PF12329 TMF_DNA_bd: TATA elem 86.7 9 0.0002 31.6 9.7 64 252-315 9-72 (74)
83 PRK02119 hypothetical protein; 86.5 5.6 0.00012 32.8 8.3 24 255-278 9-32 (73)
84 PRK00888 ftsB cell division pr 86.5 2.6 5.7E-05 36.8 6.8 42 272-313 30-71 (105)
85 PF10473 CENP-F_leu_zip: Leuci 86.4 25 0.00054 32.6 13.4 41 239-279 36-76 (140)
86 PF04102 SlyX: SlyX; InterPro 86.3 3.8 8.2E-05 33.2 7.2 32 255-286 4-35 (69)
87 PRK05431 seryl-tRNA synthetase 86.3 13 0.00028 39.6 13.1 61 256-316 29-92 (425)
88 PF08317 Spc7: Spc7 kinetochor 86.3 6 0.00013 40.4 10.3 57 255-311 209-265 (325)
89 PHA02562 46 endonuclease subun 85.4 15 0.00032 39.3 13.1 39 258-296 361-399 (562)
90 COG4942 Membrane-bound metallo 85.3 17 0.00037 39.3 13.3 70 234-310 38-107 (420)
91 KOG3119 Basic region leucine z 85.1 5.2 0.00011 40.2 9.0 58 255-312 194-251 (269)
92 PF09304 Cortex-I_coil: Cortex 85.1 28 0.00061 31.2 12.9 65 246-310 7-71 (107)
93 PF11180 DUF2968: Protein of u 85.0 28 0.0006 34.0 13.4 77 236-312 107-183 (192)
94 KOG4196 bZIP transcription fac 84.9 10 0.00022 35.1 9.9 66 254-320 46-111 (135)
95 PF06785 UPF0242: Uncharacteri 84.8 14 0.00031 39.0 12.1 80 233-316 74-167 (401)
96 KOG1414 Transcriptional activa 84.7 0.049 1.1E-06 57.1 -5.7 51 229-279 149-203 (395)
97 PF04156 IncA: IncA protein; 84.6 10 0.00022 35.2 10.2 46 258-303 105-150 (191)
98 PF15035 Rootletin: Ciliary ro 84.6 8.6 0.00019 36.8 9.8 61 254-314 66-126 (182)
99 PF14662 CCDC155: Coiled-coil 84.6 7.6 0.00016 37.9 9.5 41 258-298 11-51 (193)
100 COG3074 Uncharacterized protei 84.6 14 0.00031 31.0 9.7 51 255-305 4-54 (79)
101 KOG0982 Centrosomal protein Nu 84.5 11 0.00024 40.8 11.5 55 256-310 298-352 (502)
102 COG4942 Membrane-bound metallo 84.5 13 0.00027 40.2 12.0 45 246-290 57-101 (420)
103 PRK04325 hypothetical protein; 84.5 6.8 0.00015 32.4 7.9 24 256-279 10-33 (74)
104 PF12325 TMF_TATA_bd: TATA ele 84.0 8.7 0.00019 34.6 9.1 9 296-304 74-82 (120)
105 KOG1853 LIS1-interacting prote 83.9 18 0.00038 37.1 12.0 24 287-310 95-118 (333)
106 PF05837 CENP-H: Centromere pr 83.9 11 0.00023 33.0 9.3 68 255-323 17-84 (106)
107 PF00170 bZIP_1: bZIP transcri 83.9 5.2 0.00011 31.4 6.8 36 276-311 26-61 (64)
108 PRK00846 hypothetical protein; 83.9 8.4 0.00018 32.5 8.3 48 259-306 10-57 (77)
109 PRK09039 hypothetical protein; 83.7 15 0.00033 38.1 12.0 59 258-316 119-177 (343)
110 PF12777 MT: Microtubule-bindi 83.7 6.8 0.00015 40.3 9.4 63 256-318 229-291 (344)
111 PRK02793 phi X174 lysis protei 83.6 7.9 0.00017 31.8 8.0 25 255-279 8-32 (72)
112 KOG4403 Cell surface glycoprot 83.2 11 0.00024 41.0 10.8 76 233-312 241-324 (575)
113 PF10805 DUF2730: Protein of u 83.1 14 0.00031 32.2 9.8 55 255-309 42-98 (106)
114 PF10226 DUF2216: Uncharacteri 83.0 25 0.00054 34.4 12.2 94 231-324 20-135 (195)
115 PF12718 Tropomyosin_1: Tropom 83.0 12 0.00026 34.3 9.8 56 256-311 15-70 (143)
116 PF07407 Seadorna_VP6: Seadorn 82.9 4.8 0.0001 42.3 7.8 24 265-288 35-58 (420)
117 PF10211 Ax_dynein_light: Axon 82.8 22 0.00048 34.0 11.8 41 257-297 122-162 (189)
118 smart00338 BRLZ basic region l 82.7 5.2 0.00011 31.4 6.4 35 277-311 27-61 (65)
119 PF05266 DUF724: Protein of un 82.7 31 0.00068 33.2 12.8 57 260-316 129-185 (190)
120 PF12711 Kinesin-relat_1: Kine 82.6 11 0.00025 32.3 8.7 42 266-307 21-68 (86)
121 PF06810 Phage_GP20: Phage min 82.5 9.2 0.0002 35.6 8.9 41 267-307 25-68 (155)
122 PF10211 Ax_dynein_light: Axon 82.5 18 0.0004 34.5 11.2 58 264-321 122-180 (189)
123 PF06632 XRCC4: DNA double-str 82.5 12 0.00026 39.3 10.6 21 296-316 193-213 (342)
124 TIGR01843 type_I_hlyD type I s 82.5 20 0.00044 36.3 12.2 55 261-315 209-264 (423)
125 PF10205 KLRAQ: Predicted coil 82.5 9.1 0.0002 33.9 8.3 40 270-309 27-66 (102)
126 PF15294 Leu_zip: Leucine zipp 82.4 5.2 0.00011 40.9 7.8 45 260-304 130-174 (278)
127 TIGR03752 conj_TIGR03752 integ 82.4 8.3 0.00018 42.1 9.7 61 256-316 67-128 (472)
128 KOG1414 Transcriptional activa 82.3 0.61 1.3E-05 49.0 1.2 44 232-275 283-326 (395)
129 PRK05431 seryl-tRNA synthetase 82.0 18 0.00038 38.6 11.9 59 258-316 38-99 (425)
130 PF11577 NEMO: NF-kappa-B esse 81.9 17 0.00037 29.9 9.2 61 259-319 3-67 (68)
131 PF00038 Filament: Intermediat 81.9 40 0.00086 33.5 13.7 45 264-308 211-255 (312)
132 PRK00295 hypothetical protein; 81.8 12 0.00026 30.4 8.3 26 255-280 5-30 (68)
133 KOG0288 WD40 repeat protein Ti 81.6 5.8 0.00013 42.7 8.1 72 255-326 27-103 (459)
134 PF04102 SlyX: SlyX; InterPro 81.6 9.1 0.0002 31.0 7.5 49 259-307 1-49 (69)
135 PHA03162 hypothetical protein; 81.6 4.3 9.2E-05 37.5 6.1 29 251-279 9-37 (135)
136 PF04977 DivIC: Septum formati 81.4 6.3 0.00014 31.2 6.5 32 273-304 21-52 (80)
137 smart00340 HALZ homeobox assoc 81.3 2.9 6.4E-05 31.7 4.2 26 279-304 8-33 (44)
138 PRK13922 rod shape-determining 81.3 10 0.00022 37.5 9.2 23 285-307 71-93 (276)
139 PF05667 DUF812: Protein of un 81.2 12 0.00027 41.8 10.8 55 255-309 328-382 (594)
140 PF09728 Taxilin: Myosin-like 81.1 13 0.00028 38.2 10.2 59 255-313 244-302 (309)
141 PF09726 Macoilin: Transmembra 80.8 22 0.00047 40.6 12.7 12 34-46 189-200 (697)
142 PF07058 Myosin_HC-like: Myosi 80.7 5 0.00011 41.7 7.0 21 296-316 65-85 (351)
143 PRK02119 hypothetical protein; 80.7 10 0.00022 31.3 7.6 48 257-304 4-51 (73)
144 PF08317 Spc7: Spc7 kinetochor 80.7 14 0.00031 37.7 10.4 52 255-306 216-267 (325)
145 PRK13922 rod shape-determining 80.6 19 0.0004 35.6 10.8 33 264-296 71-106 (276)
146 PF10481 CENP-F_N: Cenp-F N-te 80.5 33 0.00072 35.4 12.5 86 232-317 16-129 (307)
147 PLN02678 seryl-tRNA synthetase 80.4 30 0.00065 37.5 13.1 84 255-338 33-120 (448)
148 PF04111 APG6: Autophagy prote 80.3 26 0.00057 36.0 12.1 54 255-308 78-131 (314)
149 KOG0977 Nuclear envelope prote 80.3 22 0.00048 39.6 12.2 65 244-308 130-194 (546)
150 PF07412 Geminin: Geminin; In 80.0 6.3 0.00014 38.6 7.1 49 266-318 122-170 (200)
151 KOG0250 DNA repair protein RAD 80.0 24 0.00052 42.0 12.9 64 245-308 369-433 (1074)
152 PF03962 Mnd1: Mnd1 family; I 80.0 14 0.0003 35.4 9.4 18 251-268 79-96 (188)
153 TIGR00414 serS seryl-tRNA synt 80.0 33 0.00071 36.6 13.1 44 294-337 73-117 (418)
154 PF14915 CCDC144C: CCDC144C pr 79.9 21 0.00044 37.1 11.0 71 243-313 181-251 (305)
155 PF09755 DUF2046: Uncharacteri 79.9 11 0.00023 39.3 9.1 50 258-307 23-72 (310)
156 KOG2391 Vacuolar sorting prote 79.9 12 0.00026 39.4 9.5 57 254-310 224-280 (365)
157 COG2433 Uncharacterized conser 79.7 13 0.00029 41.8 10.3 68 255-322 443-513 (652)
158 PF05278 PEARLI-4: Arabidopsis 79.6 33 0.00071 35.1 12.2 46 255-300 207-252 (269)
159 PHA03155 hypothetical protein; 79.6 13 0.00028 33.6 8.3 26 255-280 8-33 (115)
160 PF04949 Transcrip_act: Transc 79.5 25 0.00055 33.3 10.6 59 230-288 40-103 (159)
161 KOG1962 B-cell receptor-associ 79.3 6.4 0.00014 38.9 7.0 43 261-303 150-192 (216)
162 TIGR02231 conserved hypothetic 79.1 35 0.00075 36.9 13.2 47 272-318 127-173 (525)
163 PF10174 Cast: RIM-binding pro 79.1 12 0.00025 43.3 9.9 63 251-313 297-359 (775)
164 PF00261 Tropomyosin: Tropomyo 79.1 67 0.0014 31.4 14.4 54 258-311 172-225 (237)
165 PF00769 ERM: Ezrin/radixin/mo 79.0 35 0.00076 33.9 12.2 46 266-311 72-117 (246)
166 KOG2077 JNK/SAPK-associated pr 79.0 7.2 0.00016 43.7 7.9 52 258-309 325-376 (832)
167 PF04899 MbeD_MobD: MbeD/MobD 78.9 22 0.00048 29.4 9.0 59 259-317 3-62 (70)
168 PF04642 DUF601: Protein of un 78.5 2.7 5.8E-05 42.7 4.2 58 255-312 217-274 (311)
169 PF08826 DMPK_coil: DMPK coile 78.5 16 0.00035 29.5 7.9 32 277-308 26-57 (61)
170 PF10146 zf-C4H2: Zinc finger- 78.4 50 0.0011 32.9 13.0 68 250-317 27-101 (230)
171 PF09744 Jnk-SapK_ap_N: JNK_SA 78.4 40 0.00086 31.8 11.7 47 259-305 93-139 (158)
172 PLN02320 seryl-tRNA synthetase 78.3 36 0.00078 37.6 13.0 83 255-337 93-178 (502)
173 KOG2264 Exostosin EXT1L [Signa 78.2 16 0.00035 41.1 10.3 55 255-309 93-147 (907)
174 PF01166 TSC22: TSC-22/dip/bun 78.0 2.8 6E-05 33.8 3.4 28 270-297 15-42 (59)
175 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.0 30 0.00065 31.0 10.4 64 262-325 59-126 (132)
176 PF13094 CENP-Q: CENP-Q, a CEN 77.9 25 0.00053 32.3 10.1 68 259-326 24-92 (160)
177 COG1579 Zn-ribbon protein, pos 77.9 36 0.00078 34.2 11.9 58 253-310 87-144 (239)
178 PRK10803 tol-pal system protei 77.9 8.8 0.00019 38.3 7.7 48 255-302 54-101 (263)
179 KOG0977 Nuclear envelope prote 77.8 20 0.00044 39.8 11.0 51 257-307 164-214 (546)
180 PF07798 DUF1640: Protein of u 77.7 13 0.00028 34.8 8.4 49 259-307 48-97 (177)
181 PRK13729 conjugal transfer pil 77.7 57 0.0012 35.9 14.1 53 255-314 69-121 (475)
182 KOG4807 F-actin binding protei 77.7 19 0.00042 38.9 10.3 59 252-310 390-462 (593)
183 KOG4797 Transcriptional regula 77.6 7.6 0.00017 35.0 6.3 31 267-297 65-95 (123)
184 PRK04863 mukB cell division pr 77.4 36 0.00077 42.1 13.8 77 233-309 320-409 (1486)
185 PF08172 CASP_C: CASP C termin 76.7 12 0.00026 37.4 8.3 15 115-129 18-32 (248)
186 PF05384 DegS: Sensor protein 76.6 58 0.0012 30.8 12.2 81 239-319 18-127 (159)
187 TIGR02132 phaR_Bmeg polyhydrox 76.4 20 0.00043 34.8 9.2 57 256-319 80-136 (189)
188 PF15030 DUF4527: Protein of u 76.4 65 0.0014 32.9 13.1 86 230-315 11-97 (277)
189 PRK00736 hypothetical protein; 76.4 20 0.00043 29.1 8.0 26 255-280 5-30 (68)
190 PRK02793 phi X174 lysis protei 76.3 17 0.00036 29.9 7.6 46 258-303 4-49 (72)
191 PF10473 CENP-F_leu_zip: Leuci 76.3 66 0.0014 29.9 13.3 34 277-310 67-100 (140)
192 KOG4571 Activating transcripti 76.2 17 0.00037 37.5 9.2 36 277-312 249-284 (294)
193 PF10828 DUF2570: Protein of u 76.2 53 0.0011 28.7 11.8 53 257-309 34-86 (110)
194 PF15619 Lebercilin: Ciliary p 76.2 44 0.00095 32.3 11.6 32 245-276 8-40 (194)
195 COG3883 Uncharacterized protei 75.9 22 0.00049 36.2 9.9 50 259-308 49-98 (265)
196 PF09789 DUF2353: Uncharacteri 75.9 25 0.00055 36.7 10.5 46 258-303 68-113 (319)
197 PRK00295 hypothetical protein; 75.7 21 0.00046 29.0 8.0 46 260-305 3-48 (68)
198 PF05812 Herpes_BLRF2: Herpesv 75.7 4 8.7E-05 36.9 4.1 30 253-282 1-30 (118)
199 KOG1029 Endocytic adaptor prot 75.7 34 0.00073 39.9 12.0 16 292-307 439-454 (1118)
200 PF05335 DUF745: Protein of un 75.7 33 0.00071 33.2 10.6 66 251-316 63-128 (188)
201 PF10224 DUF2205: Predicted co 75.6 21 0.00046 30.3 8.2 54 252-305 5-59 (80)
202 PLN02678 seryl-tRNA synthetase 75.2 44 0.00095 36.3 12.5 60 257-316 42-104 (448)
203 PF00769 ERM: Ezrin/radixin/mo 75.1 26 0.00057 34.8 10.1 82 234-315 12-100 (246)
204 PF03961 DUF342: Protein of un 75.1 21 0.00045 38.0 10.0 35 282-316 374-408 (451)
205 TIGR02209 ftsL_broad cell divi 75.1 15 0.00033 29.7 7.1 36 269-304 24-59 (85)
206 COG0172 SerS Seryl-tRNA synthe 75.1 32 0.0007 37.2 11.4 83 255-337 29-116 (429)
207 TIGR01000 bacteriocin_acc bact 75.0 34 0.00074 36.3 11.6 60 256-315 237-309 (457)
208 PF10506 MCC-bdg_PDZ: PDZ doma 74.8 27 0.00059 28.7 8.4 54 259-312 2-55 (67)
209 COG1196 Smc Chromosome segrega 74.3 48 0.001 39.6 13.6 56 257-312 441-496 (1163)
210 PF15035 Rootletin: Ciliary ro 74.3 26 0.00057 33.5 9.5 22 263-284 89-110 (182)
211 KOG4643 Uncharacterized coiled 74.2 44 0.00094 39.9 12.7 79 231-309 370-448 (1195)
212 PF07558 Shugoshin_N: Shugoshi 74.0 3.6 7.9E-05 31.2 2.9 28 270-297 15-42 (46)
213 PRK00888 ftsB cell division pr 73.8 14 0.0003 32.4 6.9 30 253-282 32-61 (105)
214 PF00038 Filament: Intermediat 73.7 81 0.0018 31.3 13.2 57 255-314 223-279 (312)
215 PF08232 Striatin: Striatin fa 73.6 37 0.0008 30.9 9.8 61 260-320 9-69 (134)
216 PF08826 DMPK_coil: DMPK coile 73.5 47 0.001 26.9 9.7 47 259-305 15-61 (61)
217 PF08172 CASP_C: CASP C termin 73.4 14 0.0003 37.1 7.7 24 256-279 94-117 (248)
218 PF05377 FlaC_arch: Flagella a 73.4 12 0.00026 29.8 5.8 43 257-320 2-44 (55)
219 PRK04325 hypothetical protein; 73.1 23 0.00049 29.3 7.6 47 256-302 3-49 (74)
220 COG2919 Septum formation initi 72.8 68 0.0015 28.4 11.3 46 270-315 51-96 (117)
221 PF04340 DUF484: Protein of un 72.7 15 0.00033 35.3 7.6 52 256-311 41-92 (225)
222 PF08537 NBP1: Fungal Nap bind 72.6 33 0.00072 35.9 10.4 82 232-313 120-212 (323)
223 KOG0288 WD40 repeat protein Ti 72.6 40 0.00087 36.6 11.1 28 253-280 46-73 (459)
224 PF09789 DUF2353: Uncharacteri 72.5 20 0.00042 37.5 8.7 35 248-282 76-113 (319)
225 KOG0976 Rho/Rac1-interacting s 72.4 59 0.0013 38.3 12.9 80 229-308 100-208 (1265)
226 PF09744 Jnk-SapK_ap_N: JNK_SA 72.3 88 0.0019 29.5 12.4 9 269-277 89-97 (158)
227 PF05700 BCAS2: Breast carcino 72.2 23 0.0005 34.5 8.8 28 255-282 136-163 (221)
228 PRK00736 hypothetical protein; 72.1 26 0.00057 28.5 7.7 43 260-302 3-45 (68)
229 PF09738 DUF2051: Double stran 71.9 38 0.00083 35.0 10.6 16 227-242 85-100 (302)
230 PF14712 Snapin_Pallidin: Snap 71.7 46 0.001 27.5 9.3 35 256-290 15-49 (92)
231 PF04977 DivIC: Septum formati 71.6 24 0.00052 27.8 7.4 30 252-281 21-50 (80)
232 KOG0250 DNA repair protein RAD 71.6 68 0.0015 38.5 13.6 68 248-315 365-433 (1074)
233 PRK04406 hypothetical protein; 71.5 27 0.00059 29.0 7.8 35 257-291 13-47 (75)
234 KOG0971 Microtubule-associated 71.5 28 0.00061 41.1 10.3 70 251-320 406-478 (1243)
235 PF06428 Sec2p: GDP/GTP exchan 71.5 13 0.00028 32.6 6.2 59 255-313 8-67 (100)
236 PF05529 Bap31: B-cell recepto 71.3 34 0.00073 32.1 9.4 29 289-317 153-181 (192)
237 KOG1103 Predicted coiled-coil 71.3 20 0.00043 38.3 8.5 66 244-309 227-292 (561)
238 KOG2077 JNK/SAPK-associated pr 71.3 14 0.00029 41.7 7.6 52 254-305 328-379 (832)
239 smart00787 Spc7 Spc7 kinetocho 71.2 34 0.00073 35.4 10.1 58 256-313 205-262 (312)
240 KOG0804 Cytoplasmic Zn-finger 71.0 28 0.00061 38.0 9.7 45 272-316 385-429 (493)
241 KOG0996 Structural maintenance 70.6 53 0.0011 39.8 12.4 98 251-348 531-635 (1293)
242 KOG1318 Helix loop helix trans 70.2 25 0.00055 37.9 9.2 77 232-308 227-322 (411)
243 PF05103 DivIVA: DivIVA protei 70.1 2.7 5.9E-05 36.5 1.8 45 255-299 25-69 (131)
244 PF07200 Mod_r: Modifier of ru 70.1 83 0.0018 28.3 11.6 77 238-316 39-115 (150)
245 PRK13182 racA polar chromosome 70.0 32 0.00069 32.8 8.9 56 264-319 87-147 (175)
246 KOG0933 Structural maintenance 70.0 67 0.0015 38.5 12.9 50 265-314 818-867 (1174)
247 KOG0957 PHD finger protein [Ge 69.8 39 0.00084 37.7 10.5 63 256-318 439-501 (707)
248 PF07716 bZIP_2: Basic region 69.8 13 0.00029 28.4 5.3 30 275-304 24-53 (54)
249 TIGR02977 phageshock_pspA phag 69.7 64 0.0014 31.2 11.1 54 254-307 98-151 (219)
250 smart00787 Spc7 Spc7 kinetocho 69.6 91 0.002 32.3 12.8 47 258-304 214-260 (312)
251 PF14782 BBS2_C: Ciliary BBSom 69.5 65 0.0014 34.9 12.1 96 230-328 303-400 (431)
252 PRK10803 tol-pal system protei 69.5 39 0.00084 33.8 9.9 26 282-307 60-85 (263)
253 PF15058 Speriolin_N: Sperioli 69.4 11 0.00023 36.9 5.7 33 257-297 7-39 (200)
254 KOG0804 Cytoplasmic Zn-finger 69.4 41 0.00089 36.9 10.5 49 255-303 354-402 (493)
255 PF05278 PEARLI-4: Arabidopsis 69.3 1.4E+02 0.0029 30.8 13.6 31 282-312 213-243 (269)
256 PLN02939 transferase, transfer 69.3 47 0.001 39.5 11.8 36 281-316 224-259 (977)
257 PF05529 Bap31: B-cell recepto 69.2 33 0.00072 32.2 8.9 37 268-304 153-189 (192)
258 KOG4001 Axonemal dynein light 69.2 53 0.0012 32.8 10.4 78 243-326 169-250 (259)
259 cd07596 BAR_SNX The Bin/Amphip 69.1 85 0.0018 28.7 11.4 67 234-303 110-183 (218)
260 PF05837 CENP-H: Centromere pr 68.9 52 0.0011 28.7 9.4 69 257-326 12-80 (106)
261 PF13863 DUF4200: Domain of un 68.9 53 0.0011 28.5 9.5 91 233-326 23-117 (126)
262 PF12711 Kinesin-relat_1: Kine 68.8 23 0.00049 30.5 6.9 40 264-305 46-85 (86)
263 PF06216 RTBV_P46: Rice tungro 68.8 31 0.00068 35.4 9.0 44 242-288 68-111 (389)
264 PF12777 MT: Microtubule-bindi 68.6 19 0.00042 37.0 7.8 36 245-280 232-267 (344)
265 TIGR00219 mreC rod shape-deter 68.5 28 0.0006 35.3 8.7 36 284-319 67-106 (283)
266 TIGR00414 serS seryl-tRNA synt 68.4 32 0.0007 36.6 9.6 59 258-316 40-102 (418)
267 PF14988 DUF4515: Domain of un 68.1 65 0.0014 31.4 10.8 34 283-316 156-189 (206)
268 PHA02562 46 endonuclease subun 68.1 98 0.0021 33.1 13.2 57 246-302 328-384 (562)
269 PF02388 FemAB: FemAB family; 68.1 29 0.00063 36.6 9.1 55 255-313 242-296 (406)
270 PF10205 KLRAQ: Predicted coil 68.0 73 0.0016 28.4 10.0 55 268-322 4-58 (102)
271 PF07407 Seadorna_VP6: Seadorn 68.0 7.6 0.00017 40.9 4.7 32 255-286 32-63 (420)
272 KOG0243 Kinesin-like protein [ 67.9 49 0.0011 39.5 11.5 67 238-304 414-490 (1041)
273 PF09738 DUF2051: Double stran 67.9 40 0.00087 34.9 9.8 19 295-313 145-163 (302)
274 TIGR00606 rad50 rad50. This fa 67.6 70 0.0015 38.8 13.1 10 37-46 663-672 (1311)
275 PF15070 GOLGA2L5: Putative go 67.5 1E+02 0.0022 35.0 13.5 50 267-316 85-134 (617)
276 TIGR01843 type_I_hlyD type I s 67.5 1.4E+02 0.0031 30.3 13.6 7 332-338 274-280 (423)
277 KOG0946 ER-Golgi vesicle-tethe 67.4 48 0.001 38.8 11.0 62 239-300 655-716 (970)
278 PRK14127 cell division protein 67.3 14 0.00031 32.9 5.6 34 281-314 35-68 (109)
279 PF04849 HAP1_N: HAP1 N-termin 67.2 49 0.0011 34.5 10.2 36 266-301 231-266 (306)
280 PF04871 Uso1_p115_C: Uso1 / p 67.1 79 0.0017 28.9 10.6 20 277-296 56-75 (136)
281 PF05667 DUF812: Protein of un 67.1 28 0.00061 39.0 9.1 54 255-308 335-388 (594)
282 PF09730 BicD: Microtubule-ass 66.9 93 0.002 35.9 13.2 43 266-308 101-146 (717)
283 PF10482 CtIP_N: Tumour-suppre 66.8 43 0.00094 30.5 8.5 61 248-308 7-67 (120)
284 PRK09174 F0F1 ATP synthase sub 66.6 1.3E+02 0.0028 29.2 13.0 46 233-278 83-128 (204)
285 KOG0161 Myosin class II heavy 66.3 84 0.0018 40.1 13.6 55 257-311 1479-1540(1930)
286 PF01166 TSC22: TSC-22/dip/bun 66.2 10 0.00022 30.7 4.0 23 255-277 21-43 (59)
287 KOG0946 ER-Golgi vesicle-tethe 65.9 41 0.00089 39.3 10.1 15 31-45 386-400 (970)
288 PF12709 Kinetocho_Slk19: Cent 65.8 29 0.00062 30.1 6.9 49 255-310 27-76 (87)
289 PF06548 Kinesin-related: Kine 65.4 48 0.0011 36.3 10.1 55 254-308 384-473 (488)
290 PRK10698 phage shock protein P 65.2 86 0.0019 30.7 11.1 53 256-308 100-152 (222)
291 PLN03188 kinesin-12 family pro 65.2 42 0.0009 40.9 10.3 55 254-308 1154-1243(1320)
292 KOG4807 F-actin binding protei 65.2 42 0.0009 36.5 9.4 63 254-319 417-489 (593)
293 PF13851 GAS: Growth-arrest sp 65.0 70 0.0015 30.9 10.3 56 255-310 69-127 (201)
294 PF13805 Pil1: Eisosome compon 65.0 39 0.00085 34.6 8.9 73 233-309 126-199 (271)
295 PF15397 DUF4618: Domain of un 65.0 1.1E+02 0.0023 31.3 11.9 51 260-310 177-227 (258)
296 KOG0239 Kinesin (KAR3 subfamil 64.9 71 0.0015 36.5 11.8 52 257-308 243-294 (670)
297 PF04375 HemX: HemX; InterPro 64.8 59 0.0013 34.1 10.5 43 260-302 91-135 (372)
298 KOG4360 Uncharacterized coiled 64.7 50 0.0011 36.8 10.1 44 254-297 218-261 (596)
299 KOG0243 Kinesin-like protein [ 64.7 1.1E+02 0.0024 36.8 13.4 62 253-314 446-521 (1041)
300 KOG3564 GTPase-activating prot 64.3 56 0.0012 36.3 10.4 86 229-317 26-111 (604)
301 PF07889 DUF1664: Protein of u 64.3 99 0.0021 28.3 10.5 35 255-289 68-102 (126)
302 KOG0999 Microtubule-associated 64.3 84 0.0018 35.6 11.8 45 264-308 172-219 (772)
303 PRK05892 nucleoside diphosphat 64.1 35 0.00076 31.8 7.9 53 255-307 11-71 (158)
304 TIGR03185 DNA_S_dndD DNA sulfu 64.0 83 0.0018 35.1 12.1 8 39-46 67-74 (650)
305 KOG4343 bZIP transcription fac 63.9 23 0.00051 39.5 7.5 9 231-239 275-283 (655)
306 PF01763 Herpes_UL6: Herpesvir 63.9 24 0.00053 39.3 7.8 43 255-311 363-405 (557)
307 PRK00846 hypothetical protein; 63.5 48 0.001 28.0 7.7 11 274-284 11-21 (77)
308 PF14817 HAUS5: HAUS augmin-li 63.3 68 0.0015 36.5 11.2 51 252-302 97-147 (632)
309 PF15619 Lebercilin: Ciliary p 63.2 61 0.0013 31.3 9.5 15 255-269 96-110 (194)
310 PF05700 BCAS2: Breast carcino 63.2 37 0.0008 33.0 8.2 33 277-309 176-208 (221)
311 PF01486 K-box: K-box region; 63.1 25 0.00055 29.9 6.2 25 274-298 73-97 (100)
312 KOG1853 LIS1-interacting prote 63.0 1.1E+02 0.0024 31.6 11.6 59 248-310 126-184 (333)
313 PF07334 IFP_35_N: Interferon- 63.0 34 0.00073 29.0 6.7 43 286-338 3-45 (76)
314 KOG3650 Predicted coiled-coil 63.0 33 0.00071 30.7 6.9 40 263-302 64-103 (120)
315 PF10146 zf-C4H2: Zinc finger- 63.0 79 0.0017 31.5 10.5 44 262-305 60-103 (230)
316 PF10168 Nup88: Nuclear pore c 62.9 61 0.0013 37.2 10.9 7 262-268 586-592 (717)
317 PF09730 BicD: Microtubule-ass 62.9 52 0.0011 37.9 10.3 65 256-320 70-137 (717)
318 PF01486 K-box: K-box region; 62.8 95 0.0021 26.3 9.7 26 291-316 69-94 (100)
319 PF03980 Nnf1: Nnf1 ; InterPr 62.8 13 0.00028 32.0 4.4 30 253-282 78-107 (109)
320 PF04999 FtsL: Cell division p 62.7 23 0.0005 29.7 5.9 37 267-303 33-69 (97)
321 KOG3650 Predicted coiled-coil 62.7 32 0.0007 30.7 6.8 36 267-302 61-96 (120)
322 KOG1103 Predicted coiled-coil 62.5 78 0.0017 34.1 10.7 49 254-302 131-179 (561)
323 TIGR00998 8a0101 efflux pump m 62.2 58 0.0013 32.3 9.6 23 292-314 141-163 (334)
324 PF05377 FlaC_arch: Flagella a 61.8 54 0.0012 26.2 7.3 31 255-285 7-37 (55)
325 PF09727 CortBP2: Cortactin-bi 61.6 1.1E+02 0.0024 30.0 10.9 45 264-308 136-180 (192)
326 KOG3335 Predicted coiled-coil 61.6 18 0.00039 35.0 5.5 41 232-278 89-129 (181)
327 PF05082 Rop-like: Rop-like; 61.4 93 0.002 25.7 9.1 55 256-310 3-64 (66)
328 TIGR00606 rad50 rad50. This fa 61.2 1.1E+02 0.0025 37.0 13.3 22 302-323 939-960 (1311)
329 PRK10963 hypothetical protein; 61.0 25 0.00055 34.1 6.6 46 260-309 42-87 (223)
330 COG2900 SlyX Uncharacterized p 60.9 64 0.0014 27.1 7.9 12 256-267 9-20 (72)
331 COG3937 Uncharacterized conser 60.7 40 0.00088 30.2 7.1 42 274-315 66-108 (108)
332 PF07246 Phlebovirus_NSM: Phle 60.4 77 0.0017 32.5 10.0 37 282-318 201-237 (264)
333 KOG4360 Uncharacterized coiled 60.2 54 0.0012 36.6 9.4 62 257-318 242-303 (596)
334 PF04136 Sec34: Sec34-like fam 60.1 99 0.0022 28.8 10.0 53 257-309 23-75 (157)
335 PF04012 PspA_IM30: PspA/IM30 60.0 1.2E+02 0.0027 28.8 11.0 12 274-285 117-128 (221)
336 PF05557 MAD: Mitotic checkpoi 59.8 69 0.0015 36.3 10.6 18 300-317 609-626 (722)
337 KOG2264 Exostosin EXT1L [Signa 59.8 1.6E+02 0.0035 33.7 12.9 63 258-320 89-151 (907)
338 PF07989 Microtub_assoc: Micro 59.7 1E+02 0.0022 25.7 9.2 34 280-313 40-73 (75)
339 PF10168 Nup88: Nuclear pore c 59.6 1.2E+02 0.0027 34.8 12.5 37 266-302 583-619 (717)
340 PF11365 DUF3166: Protein of u 59.5 40 0.00086 29.6 6.8 23 281-303 20-42 (96)
341 PF06419 COG6: Conserved oligo 59.4 1.4E+02 0.0031 33.4 12.8 62 254-315 44-105 (618)
342 KOG0995 Centromere-associated 59.3 1.3E+02 0.0029 33.8 12.3 22 108-129 102-123 (581)
343 PRK10929 putative mechanosensi 59.2 1.3E+02 0.0027 36.6 12.9 53 266-318 262-314 (1109)
344 PF05622 HOOK: HOOK protein; 59.1 3.1 6.7E-05 46.7 0.0 60 248-307 318-380 (713)
345 PRK02224 chromosome segregatio 59.0 1.7E+02 0.0037 33.4 13.7 17 299-315 574-590 (880)
346 KOG0933 Structural maintenance 59.0 1.4E+02 0.0029 36.1 12.7 59 253-311 813-871 (1174)
347 TIGR01010 BexC_CtrB_KpsE polys 59.0 1.3E+02 0.0029 30.8 11.7 31 255-285 170-200 (362)
348 KOG2991 Splicing regulator [RN 58.9 52 0.0011 33.9 8.5 66 255-320 236-301 (330)
349 PF03980 Nnf1: Nnf1 ; InterPr 58.7 58 0.0013 28.0 7.8 32 273-304 77-108 (109)
350 TIGR01000 bacteriocin_acc bact 58.6 73 0.0016 33.9 10.0 63 254-316 242-317 (457)
351 PF13870 DUF4201: Domain of un 58.4 1.6E+02 0.0034 27.4 13.0 14 295-308 157-170 (177)
352 PF07558 Shugoshin_N: Shugoshi 58.3 11 0.00024 28.5 2.9 43 235-278 2-44 (46)
353 TIGR02209 ftsL_broad cell divi 58.2 35 0.00076 27.7 6.0 31 252-282 28-58 (85)
354 PRK14127 cell division protein 58.2 58 0.0012 29.1 7.7 24 256-279 31-54 (109)
355 TIGR02231 conserved hypothetic 57.8 1.3E+02 0.0028 32.7 11.9 45 265-309 127-171 (525)
356 PTZ00454 26S protease regulato 57.6 41 0.00088 35.7 7.9 29 290-318 36-64 (398)
357 PF13870 DUF4201: Domain of un 57.5 1.2E+02 0.0027 28.1 10.3 76 241-316 19-117 (177)
358 PF04728 LPP: Lipoprotein leuc 57.4 1E+02 0.0022 24.8 8.2 22 257-278 5-26 (56)
359 PF06103 DUF948: Bacterial pro 57.3 1.1E+02 0.0024 25.3 10.2 36 256-291 27-62 (90)
360 PF14645 Chibby: Chibby family 57.3 37 0.00079 30.4 6.4 35 262-296 78-112 (116)
361 KOG0612 Rho-associated, coiled 57.0 1.4E+02 0.0029 36.7 12.5 63 252-314 462-532 (1317)
362 KOG4643 Uncharacterized coiled 57.0 68 0.0015 38.5 9.9 32 252-283 527-558 (1195)
363 PF00261 Tropomyosin: Tropomyo 56.8 1.9E+02 0.0041 28.3 11.9 59 257-315 94-152 (237)
364 PF14362 DUF4407: Domain of un 56.6 2.2E+02 0.0048 28.5 12.9 30 254-283 134-163 (301)
365 PF11544 Spc42p: Spindle pole 56.4 55 0.0012 27.8 6.9 45 259-303 9-53 (76)
366 PF14282 FlxA: FlxA-like prote 56.4 52 0.0011 28.7 7.1 21 256-276 20-40 (106)
367 PF12709 Kinetocho_Slk19: Cent 56.0 1.2E+02 0.0026 26.3 9.0 41 253-293 40-80 (87)
368 KOG0978 E3 ubiquitin ligase in 55.9 1.9E+02 0.0041 33.5 13.0 63 255-317 552-614 (698)
369 COG3879 Uncharacterized protei 55.8 50 0.0011 33.4 7.8 14 290-303 89-102 (247)
370 PRK14872 rod shape-determining 55.8 42 0.00091 35.3 7.5 28 283-310 57-84 (337)
371 PF03962 Mnd1: Mnd1 family; I 55.6 2E+02 0.0042 27.6 13.6 24 257-280 71-94 (188)
372 PF06657 Cep57_MT_bd: Centroso 55.6 1.2E+02 0.0027 25.3 9.1 58 259-316 14-76 (79)
373 PF13815 Dzip-like_N: Iguana/D 55.6 75 0.0016 28.0 8.1 15 288-302 92-106 (118)
374 PRK13454 F0F1 ATP synthase sub 55.5 1.9E+02 0.004 27.4 13.7 46 233-278 61-106 (181)
375 PF10212 TTKRSYEDQ: Predicted 55.4 97 0.0021 34.5 10.4 54 257-310 422-475 (518)
376 KOG4673 Transcription factor T 55.3 1.3E+02 0.0028 35.0 11.5 28 288-315 578-605 (961)
377 PF09602 PhaP_Bmeg: Polyhydrox 55.1 2E+02 0.0044 27.7 11.5 72 245-316 24-104 (165)
378 PF10498 IFT57: Intra-flagella 55.1 2E+02 0.0043 30.5 12.4 25 105-131 95-119 (359)
379 PRK10476 multidrug resistance 55.0 86 0.0019 31.8 9.5 29 285-313 140-168 (346)
380 PF14257 DUF4349: Domain of un 54.9 81 0.0018 31.0 9.0 27 289-315 168-194 (262)
381 COG1792 MreC Cell shape-determ 54.8 36 0.00079 34.5 6.7 30 267-296 71-103 (284)
382 PF07767 Nop53: Nop53 (60S rib 54.7 67 0.0015 33.6 8.9 38 230-267 272-309 (387)
383 COG3352 FlaC Putative archaeal 54.6 83 0.0018 30.0 8.5 55 255-309 79-134 (157)
384 KOG4673 Transcription factor T 54.3 1.7E+02 0.0036 34.2 12.1 57 261-317 703-759 (961)
385 PF05911 DUF869: Plant protein 53.9 81 0.0018 36.7 10.0 55 254-308 91-166 (769)
386 PF13166 AAA_13: AAA domain 53.7 2.1E+02 0.0046 31.8 13.0 60 257-316 405-464 (712)
387 PF04012 PspA_IM30: PspA/IM30 53.5 1.5E+02 0.0033 28.2 10.4 27 282-308 104-130 (221)
388 PF03670 UPF0184: Uncharacteri 53.0 80 0.0017 27.2 7.4 44 259-302 30-73 (83)
389 KOG0982 Centrosomal protein Nu 52.8 69 0.0015 35.1 8.6 27 282-308 303-329 (502)
390 KOG0995 Centromere-associated 52.7 84 0.0018 35.4 9.4 43 255-297 280-322 (581)
391 PRK01156 chromosome segregatio 52.6 2.5E+02 0.0054 32.4 13.7 16 295-310 254-269 (895)
392 KOG3156 Uncharacterized membra 52.5 86 0.0019 31.3 8.6 54 266-322 98-152 (220)
393 COG1340 Uncharacterized archae 52.4 2.1E+02 0.0045 29.9 11.7 45 239-283 31-76 (294)
394 PF10779 XhlA: Haemolysin XhlA 52.4 1.1E+02 0.0023 24.8 7.9 37 281-317 18-54 (71)
395 KOG0709 CREB/ATF family transc 52.3 42 0.0009 36.8 7.0 27 279-305 275-301 (472)
396 PF14282 FlxA: FlxA-like prote 52.2 1.1E+02 0.0024 26.7 8.4 14 256-269 27-40 (106)
397 TIGR02680 conserved hypothetic 52.1 2.4E+02 0.0053 34.7 14.1 45 243-287 870-914 (1353)
398 PF06428 Sec2p: GDP/GTP exchan 52.0 16 0.00036 32.0 3.3 63 256-318 16-79 (100)
399 KOG0980 Actin-binding protein 51.9 1.8E+02 0.004 34.5 12.2 19 31-49 240-258 (980)
400 PF10883 DUF2681: Protein of u 51.9 74 0.0016 27.5 7.1 33 264-301 32-64 (87)
401 PF10174 Cast: RIM-binding pro 51.6 2E+02 0.0044 33.6 12.6 62 256-317 288-349 (775)
402 KOG2189 Vacuolar H+-ATPase V0 51.5 1.2E+02 0.0025 35.6 10.5 61 252-312 53-128 (829)
403 PRK10636 putative ABC transpor 51.4 1.2E+02 0.0026 33.9 10.7 57 255-311 563-626 (638)
404 PRK10698 phage shock protein P 51.3 1.9E+02 0.0041 28.4 10.8 46 264-309 101-146 (222)
405 PRK10722 hypothetical protein; 51.0 2.1E+02 0.0045 29.2 11.2 27 286-312 179-205 (247)
406 PF09486 HrpB7: Bacterial type 51.0 1.6E+02 0.0034 28.0 9.8 38 279-316 82-119 (158)
407 PRK13923 putative spore coat p 51.0 1.6E+02 0.0035 28.3 10.0 44 276-319 111-154 (170)
408 KOG0964 Structural maintenance 51.0 2.1E+02 0.0045 34.6 12.5 46 270-315 454-499 (1200)
409 TIGR03185 DNA_S_dndD DNA sulfu 50.4 2.9E+02 0.0062 31.0 13.4 6 40-45 136-141 (650)
410 PRK10361 DNA recombination pro 50.4 3.2E+02 0.007 30.2 13.4 25 259-283 64-88 (475)
411 COG5185 HEC1 Protein involved 50.4 82 0.0018 35.0 8.8 55 254-308 486-544 (622)
412 PRK04863 mukB cell division pr 50.3 2.4E+02 0.0053 35.3 13.7 73 250-322 357-429 (1486)
413 KOG2991 Splicing regulator [RN 50.2 84 0.0018 32.5 8.3 56 262-317 217-277 (330)
414 cd07429 Cby_like Chibby, a nuc 50.1 36 0.00077 30.5 5.1 37 276-315 72-108 (108)
415 PHA03011 hypothetical protein; 49.8 1.2E+02 0.0026 27.3 8.2 47 256-302 65-111 (120)
416 PF15290 Syntaphilin: Golgi-lo 49.6 1.6E+02 0.0034 30.8 10.2 25 285-309 119-143 (305)
417 KOG0976 Rho/Rac1-interacting s 49.6 1.1E+02 0.0023 36.3 9.8 63 253-315 104-166 (1265)
418 PF09325 Vps5: Vps5 C terminal 49.5 2.3E+02 0.005 26.7 11.7 80 234-316 128-215 (236)
419 COG1340 Uncharacterized archae 49.5 3.2E+02 0.0069 28.6 12.5 51 258-308 30-80 (294)
420 PF14817 HAUS5: HAUS augmin-li 49.5 3.4E+02 0.0074 31.0 13.8 51 258-308 82-132 (632)
421 PTZ00454 26S protease regulato 49.2 66 0.0014 34.1 7.8 17 261-277 28-44 (398)
422 PF11180 DUF2968: Protein of u 49.1 2.7E+02 0.0059 27.4 11.8 54 256-309 113-166 (192)
423 PF07200 Mod_r: Modifier of ru 48.9 1.4E+02 0.003 26.8 8.9 10 262-271 55-64 (150)
424 PF09403 FadA: Adhesion protei 48.9 1.8E+02 0.004 26.6 9.6 38 238-277 37-74 (126)
425 PF15066 CAGE1: Cancer-associa 48.8 1.1E+02 0.0023 33.9 9.4 51 254-304 368-425 (527)
426 PF10234 Cluap1: Clusterin-ass 48.7 1.4E+02 0.003 30.7 9.6 62 253-320 156-217 (267)
427 TIGR03545 conserved hypothetic 48.7 1E+02 0.0023 34.3 9.6 75 243-317 179-268 (555)
428 PF15397 DUF4618: Domain of un 48.5 1.5E+02 0.0032 30.3 9.8 29 254-282 5-33 (258)
429 PF06008 Laminin_I: Laminin Do 48.5 2.8E+02 0.0061 27.4 12.1 50 257-306 47-96 (264)
430 TIGR02971 heterocyst_DevB ABC 48.5 1.9E+02 0.0041 28.9 10.6 91 231-338 118-213 (327)
431 TIGR01461 greB transcription e 48.2 49 0.0011 30.8 6.0 25 257-281 10-35 (156)
432 PF11068 YlqD: YlqD protein; 47.9 2.2E+02 0.0049 26.1 11.0 32 253-284 18-49 (131)
433 PRK11281 hypothetical protein; 47.6 3E+02 0.0064 33.6 13.5 55 264-318 280-334 (1113)
434 PLN02320 seryl-tRNA synthetase 47.6 1E+02 0.0022 34.2 9.1 59 258-316 103-163 (502)
435 PTZ00464 SNF-7-like protein; P 47.3 2.6E+02 0.0056 27.5 11.1 31 260-290 66-96 (211)
436 KOG2260 Cell division cycle 37 46.8 1.4E+02 0.0031 31.9 9.7 64 251-314 43-120 (372)
437 PF11544 Spc42p: Spindle pole 46.8 1.8E+02 0.004 24.7 9.6 32 285-316 14-45 (76)
438 PF05557 MAD: Mitotic checkpoi 46.6 22 0.00047 40.2 4.0 32 284-315 504-535 (722)
439 PRK09841 cryptic autophosphory 46.6 1.3E+02 0.0027 34.3 10.0 12 34-45 15-26 (726)
440 PF03449 GreA_GreB_N: Transcri 46.5 1.1E+02 0.0024 25.3 7.1 52 257-308 11-71 (74)
441 PRK14160 heat shock protein Gr 46.2 1.1E+02 0.0024 30.2 8.3 43 256-298 55-97 (211)
442 KOG1850 Myosin-like coiled-coi 46.2 1.5E+02 0.0033 31.5 9.7 61 256-316 251-311 (391)
443 PF13815 Dzip-like_N: Iguana/D 46.1 1.5E+02 0.0032 26.2 8.4 39 267-305 78-116 (118)
444 KOG0483 Transcription factor H 46.1 49 0.0011 32.4 5.8 44 270-313 106-149 (198)
445 TIGR03007 pepcterm_ChnLen poly 46.1 1.8E+02 0.0038 31.0 10.5 10 81-90 119-128 (498)
446 COG4372 Uncharacterized protei 46.0 4.4E+02 0.0096 28.9 13.5 20 258-277 147-166 (499)
447 PRK04778 septation ring format 46.0 2.1E+02 0.0046 31.6 11.4 47 270-316 377-423 (569)
448 PF08581 Tup_N: Tup N-terminal 45.9 1.8E+02 0.004 24.5 11.1 63 255-317 4-70 (79)
449 PF05600 DUF773: Protein of un 45.9 87 0.0019 34.5 8.3 51 251-301 442-492 (507)
450 PF14523 Syntaxin_2: Syntaxin- 45.8 1.7E+02 0.0038 24.2 9.0 57 259-315 30-89 (102)
451 PF08606 Prp19: Prp19/Pso4-lik 45.5 92 0.002 26.1 6.5 40 278-317 10-56 (70)
452 PF05911 DUF869: Plant protein 45.5 1.3E+02 0.0028 35.1 9.9 60 258-317 634-693 (769)
453 PF07889 DUF1664: Protein of u 45.4 2E+02 0.0044 26.3 9.3 46 270-315 62-107 (126)
454 KOG0249 LAR-interacting protei 45.3 1.8E+02 0.004 33.9 10.8 41 264-304 218-258 (916)
455 PF04859 DUF641: Plant protein 45.1 65 0.0014 29.7 6.2 18 278-295 110-127 (131)
456 PF07047 OPA3: Optic atrophy 3 44.9 47 0.001 30.1 5.2 37 232-274 95-131 (134)
457 PF10359 Fmp27_WPPW: RNA pol I 44.7 89 0.0019 33.9 8.1 58 255-317 170-227 (475)
458 PF13874 Nup54: Nucleoporin co 44.6 1.2E+02 0.0026 27.6 7.8 27 257-283 53-79 (141)
459 PF10158 LOH1CR12: Tumour supp 44.6 2.5E+02 0.0055 25.7 10.3 71 258-332 52-126 (131)
460 KOG0996 Structural maintenance 44.5 2.9E+02 0.0062 34.0 12.5 69 242-310 529-597 (1293)
461 PRK11147 ABC transporter ATPas 44.0 1.1E+02 0.0024 34.0 8.9 24 257-280 570-593 (635)
462 PF13118 DUF3972: Protein of u 44.0 93 0.002 28.7 6.9 59 232-300 65-123 (126)
463 KOG2129 Uncharacterized conser 43.8 45 0.00097 36.4 5.6 50 258-307 46-95 (552)
464 PF01519 DUF16: Protein of unk 43.8 1.2E+02 0.0026 27.1 7.3 23 297-319 78-100 (102)
465 KOG0483 Transcription factor H 43.6 37 0.00079 33.2 4.6 44 266-309 109-152 (198)
466 PRK10920 putative uroporphyrin 43.3 2.1E+02 0.0046 30.7 10.5 46 257-302 94-141 (390)
467 KOG2129 Uncharacterized conser 43.1 5E+02 0.011 28.8 19.4 47 264-310 280-326 (552)
468 KOG2751 Beclin-like protein [S 43.1 3.4E+02 0.0075 29.8 12.0 60 246-305 155-219 (447)
469 cd07666 BAR_SNX7 The Bin/Amphi 43.1 1.4E+02 0.003 30.0 8.6 51 251-304 159-209 (243)
470 PF13874 Nup54: Nucleoporin co 42.9 78 0.0017 28.8 6.3 60 255-314 65-124 (141)
471 PF08912 Rho_Binding: Rho Bind 42.7 1.2E+02 0.0025 25.4 6.7 33 260-292 1-33 (69)
472 PF04728 LPP: Lipoprotein leuc 42.6 1.8E+02 0.0039 23.4 8.3 16 287-302 21-36 (56)
473 PF03245 Phage_lysis: Bacterio 42.5 2.3E+02 0.0049 25.5 9.1 59 242-300 1-59 (125)
474 KOG4674 Uncharacterized conser 42.3 1.5E+02 0.0033 37.7 10.2 70 247-316 1235-1304(1822)
475 PRK01156 chromosome segregatio 42.3 4.8E+02 0.01 30.1 13.9 87 231-317 626-722 (895)
476 cd07429 Cby_like Chibby, a nuc 42.2 56 0.0012 29.3 5.1 37 255-291 72-108 (108)
477 COG3264 Small-conductance mech 42.1 1.4E+02 0.0031 35.1 9.5 103 233-335 28-135 (835)
478 PRK03992 proteasome-activating 42.1 92 0.002 32.6 7.6 47 257-303 3-49 (389)
479 PF10481 CENP-F_N: Cenp-F N-te 42.0 1.6E+02 0.0036 30.6 9.0 62 254-315 66-127 (307)
480 PF09763 Sec3_C: Exocyst compl 41.9 1.1E+02 0.0023 34.5 8.5 64 254-317 36-99 (701)
481 PRK11519 tyrosine kinase; Prov 41.6 2E+02 0.0043 32.7 10.6 77 242-318 254-332 (719)
482 TIGR01730 RND_mfp RND family e 41.6 2.3E+02 0.005 27.5 9.8 74 258-331 60-143 (322)
483 PF10046 BLOC1_2: Biogenesis o 41.5 2.3E+02 0.0049 24.3 10.1 66 254-319 13-78 (99)
484 PF05600 DUF773: Protein of un 41.5 1.9E+02 0.0041 31.9 10.1 62 254-315 431-492 (507)
485 TIGR01069 mutS2 MutS2 family p 41.2 2.4E+02 0.0051 32.8 11.2 69 247-315 500-568 (771)
486 TIGR02977 phageshock_pspA phag 41.2 2.6E+02 0.0056 27.1 10.0 60 255-314 92-151 (219)
487 PRK03992 proteasome-activating 41.1 94 0.002 32.5 7.5 48 263-310 2-49 (389)
488 PF00435 Spectrin: Spectrin re 41.0 1.7E+02 0.0037 22.8 10.1 61 255-315 34-98 (105)
489 PRK11546 zraP zinc resistance 41.0 1.4E+02 0.0029 28.1 7.6 65 243-307 49-113 (143)
490 PF07111 HCR: Alpha helical co 40.9 4.9E+02 0.011 30.4 13.2 88 228-315 474-574 (739)
491 PF05103 DivIVA: DivIVA protei 40.9 22 0.00047 30.8 2.4 60 258-317 21-80 (131)
492 PF11382 DUF3186: Protein of u 40.9 62 0.0013 33.2 6.0 39 278-316 34-72 (308)
493 COG5570 Uncharacterized small 40.8 45 0.00098 26.7 3.8 50 256-305 6-55 (57)
494 PRK14143 heat shock protein Gr 40.8 1.7E+02 0.0038 29.3 8.9 68 259-326 64-137 (238)
495 PRK14160 heat shock protein Gr 40.8 1.8E+02 0.0038 28.8 8.8 55 261-315 53-107 (211)
496 PF07058 Myosin_HC-like: Myosi 40.7 1.8E+02 0.0038 30.8 9.1 70 257-326 61-151 (351)
497 PF15254 CCDC14: Coiled-coil d 40.7 4.4E+02 0.0094 31.2 12.8 94 231-324 456-549 (861)
498 PF10226 DUF2216: Uncharacteri 40.6 2.3E+02 0.0051 27.9 9.4 69 244-318 20-88 (195)
499 PRK11281 hypothetical protein; 40.6 3.3E+02 0.0072 33.2 12.5 83 233-315 159-252 (1113)
500 PRK11091 aerobic respiration c 40.6 5E+02 0.011 29.0 13.4 82 233-314 81-162 (779)
No 1
>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes. They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.
Probab=99.94 E-value=6.4e-28 Score=211.01 Aligned_cols=114 Identities=39% Similarity=0.604 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhccCCCCCCCCCCCCCCccCcCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 013166 301 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSF 380 (448)
Q Consensus 301 ~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~~~~~~s~~~~vp~q~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 380 (448)
+||+|||||||+|+|++++|++|+++.++++++|||.++++|+.+++++|||+++.|||+++.++.+++..+ |.
T Consensus 1 TLRAKVKMAEe~VkRvTg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~Piq~~~~~~~~~~~~~~~i~~~~-----~~- 74 (115)
T PF12498_consen 1 TLRAKVKMAEETVKRVTGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVPIQDNSNNYFHQPNPNPTISVHG-----NN- 74 (115)
T ss_pred ChhHHHHHHHHHHHHHhccCccccccccCCCCCCCCCCCcccccccccCCccCCchhhccCCCCCCCcCCCC-----cc-
Confidence 499999999999999999999999999999999999999999888899999999999999988888876322 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCccCCC
Q 013166 381 PSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP 427 (448)
Q Consensus 381 ~~~~~~p~~~~~q~~~~~~~m~~~~s~q~vaslehlqkr~~~~~~~~ 427 (448)
+.+. ++...++.||+|+++|||||||||||||||+|+++|
T Consensus 75 ----~~~~---~~~~~~~~~~~~t~smqrvaslEhlQkri~~g~~~~ 114 (115)
T PF12498_consen 75 ----DNPE---PGGAFVGGKMGRTASMQRVASLEHLQKRIRGGPTSS 114 (115)
T ss_pred ----cccc---cccccccccccCCccCccchhHHHHHHHhcCCCCCC
Confidence 1221 122347889999999999999999999999998765
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.32 E-value=1.1e-11 Score=97.67 Aligned_cols=62 Identities=40% Similarity=0.547 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN 292 (448)
.++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..+..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999999999987666665555544
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.27 E-value=2.4e-11 Score=95.55 Aligned_cols=61 Identities=39% Similarity=0.571 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN 292 (448)
+.|+.+|+++||+||++||.||++|+++|+.+|..|+.+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999999999998888888887776
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.23 E-value=7.6e-11 Score=114.82 Aligned_cols=79 Identities=27% Similarity=0.382 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
|+|-.||+++||.+|+.+|.|||+++++||.+|..|..||+.|+.+.+.|+.+.+.|.++|.+|..+++.||+.|..+.
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998876653
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.19 E-value=3e-11 Score=127.69 Aligned_cols=70 Identities=36% Similarity=0.424 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 227 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 227 ~~d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
.+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..++.||.+||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 4677889999999999999999999999999999999999999999999999999999999999999996
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.97 E-value=3.6e-09 Score=81.04 Aligned_cols=51 Identities=39% Similarity=0.629 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888 9999999999999999999999999999999999998887654
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.95 E-value=1e-09 Score=115.00 Aligned_cols=73 Identities=33% Similarity=0.433 Sum_probs=67.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 230 ~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+...||.||+|+|.+||+.||+|||.|++.||.+|.....||++|.+++. .|+.+|+.|-+|+..|++.+.+.
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence 34679999999999999999999999999999999999999999988887 57899999999999999988773
No 8
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.92 E-value=1.9e-09 Score=107.66 Aligned_cols=58 Identities=29% Similarity=0.512 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
+..-.||+-|++||||+||.+|+|||+|++.||.+|..|+.+|..|-++|..|.+-|.
T Consensus 286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 3446888999999999999999999999999999999999999999999998887664
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.03 E-value=1.7e-05 Score=78.74 Aligned_cols=49 Identities=29% Similarity=0.457 Sum_probs=42.2
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 232 d~KR~RR-mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
|..|..| .++|||.|.+||.||.+||..||.+|..|..+|..|...+..
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 4444444 799999999999999999999999999999999888777664
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.01 E-value=1.2e-07 Score=79.86 Aligned_cols=59 Identities=37% Similarity=0.501 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
.+.|.+||.++||.+|++||.||..++.+|+.++..|+.+...|..++..+.+.+..+.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk 85 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999888877777777666555444433
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.97 E-value=0.0065 Score=55.29 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
-.|.+||-++||=-|+-+|-|+.++-.+||.+...|..|.. .|..||..++.++..|+.|++.+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~--------------~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVE--------------KLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888899999999999999999888777776655444433 455666677777777777665443
No 12
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.84 E-value=0.017 Score=58.69 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=41.9
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 232 d~KR~RR-mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
+.|+.|| .+.|..+|-|=|+||++..++|+.++..|+.+|.+|+.++..+.+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ler 276 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELER 276 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 455555699999999999999999999999999999988875443
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.69 E-value=0.0069 Score=60.47 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=37.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
.-|.-+|=+++||||.+.++...++..+|..|+.||..|+.++..
T Consensus 196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457889999999999999999999999998888888777764
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.43 E-value=0.052 Score=44.75 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+-++.||.+|..+-.....|..++..|.++...+..+|..|+.+...|+.......+.++-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999988888888888888888888888888888888888887766665544443
No 15
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.25 E-value=0.0084 Score=65.86 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=50.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 235 R~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
=+||.=|||.+|+++|+||...|..||.+|..|+.|-.+|+++-. .+...=.+++.++..|-.+
T Consensus 491 DIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 491 DIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred ccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999888876644 3344445566666666444
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.25 E-value=0.048 Score=44.38 Aligned_cols=61 Identities=21% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+..|+.+|.+|-.....|+.++..|.++...+..|++.|..+++.-|.|| |.++.||.++.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhc
Confidence 56677777777777777777777777777778888888887777777664 45677776653
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.79 E-value=0.11 Score=50.38 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 255 AHLNELETQAGQLRA----EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~----ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+.+++|+.++..+.. +...|..++....+.+..|..+|..|+.++..++.++..++...+++.
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333 334445555555666666777777777777777777766665555554
No 18
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.79 E-value=0.079 Score=49.88 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
....|+.||..|..++..|++++..|..||..|..++..+....+++-.+++|.+.+
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999999999999999999988888888887754
No 19
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=95.41 E-value=0.16 Score=42.12 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~--------~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
|.+.+.+++.|+.||=.|+-+|-.|.+++. .+..+|-.||.++..|++.|+.....+..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999998877 3577999999999999999888877766543
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.40 E-value=0.097 Score=46.07 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+|=.++..|+.....|..++..|+.+...+..||..|+.+...||.+|...+.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666666777777778888888888888877766554
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.32 E-value=0.051 Score=41.09 Aligned_cols=42 Identities=24% Similarity=0.444 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577788888888888888888888889999988888877764
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.76 E-value=0.27 Score=40.10 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+.++.|-....+|+.||..|+.++..+...-..|...|..=+.+|+.|=.+|+.+|.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 457778888888888888888888888888888888888888888888888777663
No 23
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.70 E-value=0.2 Score=44.47 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+|=.++..|+.....|..++..|.+....+..||..|+.+...||.+|...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556666666666666666666666677777777777777777776654
No 24
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.60 E-value=0.35 Score=39.59 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+.+++-|..+++..+.+|..|..+-.....++..+-.+|..|+++++.|+++|..
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888888888888888888877654
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.57 E-value=0.28 Score=46.44 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql 299 (448)
..++++.+...+..-+.-.......+.++..-+..|..|...|.-++..+.+++..+..||+.|-.+.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444555555555555555555555555555555555555555554444
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.52 E-value=0.69 Score=50.92 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=66.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
|....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+..+++.++..+|+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667777777777777788888888888888888888888888888888888899999888888888888887666
Q ss_pred HHH
Q 013166 314 KRV 316 (448)
Q Consensus 314 ~Rl 316 (448)
.-+
T Consensus 230 ~~l 232 (546)
T PF07888_consen 230 KTL 232 (546)
T ss_pred HHH
Confidence 554
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.52 E-value=0.19 Score=44.29 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
..+.+||.++..|-.+...|+.++..+.++...|..||..||..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999876
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.40 E-value=0.64 Score=38.36 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+..+-..+..|+.|+..|+.+...+.+....|..+|..|+.+-.....+|..+
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777888888888888888888887777654
No 29
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.3 Score=40.64 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
-+.=|.-+|..|+.+|..|..+...+++....|..+|..||.+-...+.+|..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999988887665543
No 30
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.30 E-value=0.1 Score=56.32 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
..+++||.+++.|+.|.+.|.++..++++++..++.||..|+++++.+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999999999999999999998554
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.28 E-value=0.22 Score=44.21 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
..+..||.++..|-.+...|+.++..+.++...|..||..||..+.++..
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999999999999999999999844
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.25 E-value=0.17 Score=45.12 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
++=.+|..|+.....|.+++..+.+++..+..||..|+-+.+.||.+|..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34456777777778888888888899999999999999999999998877
No 33
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=93.59 E-value=1.1 Score=37.05 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
..||.-=+..+..-......+..++..+.....+|..|++++..|..+|..+.+.+.||.
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333344455566677778888888888899999999999999999999999999885
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.56 E-value=1.3 Score=43.09 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
++..+|+.++..+..+...|..++..|++++..+..+++.|++++..++..+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555444444555555555555555566666666666655443
No 35
>PRK11637 AmiB activator; Provisional
Probab=93.53 E-value=1.6 Score=45.92 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
-...-...+..|+.++..++.+...+..++..+++++..+..+=..|+.++..++..
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555555555544444444444444333
No 36
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.04 E-value=2 Score=40.66 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
...+...+.++..|+.++..|..++..+...+......|..|+.++..|+-.+.++|+...+|..-|.-
T Consensus 108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777777777777777777777777777777777777777666643
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.01 E-value=2.7 Score=37.98 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=36.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 235 R~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+..|=...||..-....++...++.|+..+..|+.++..+..++..+..+... |+.++..+...++...+.+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~-------l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ-------LQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555544444444433 33344444444444444444
Q ss_pred HH
Q 013166 315 RV 316 (448)
Q Consensus 315 Rl 316 (448)
|+
T Consensus 119 kl 120 (151)
T PF11559_consen 119 KL 120 (151)
T ss_pred HH
Confidence 44
No 38
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.98 E-value=3.7 Score=37.11 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+|.|-..+.++|..++..|+.++..|...+..|..++..+..+...+..+...|..+++.++...+..
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666666666666666666666666666666555544
No 39
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.60 E-value=1.6 Score=37.02 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~ 294 (448)
++.||.+|.+.-....-|.-++..|.++...+..++..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554444444444444444444444443333
No 40
>PRK11637 AmiB activator; Provisional
Probab=92.31 E-value=2.2 Score=44.85 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
..+....-....+..+.+++.++..|..+...+..++..+++++..+..+=..|..++..+++++...++.+
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445556666666677777777777777777777777777766777777777777766654443
No 41
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.17 E-value=2.4 Score=41.52 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~q 277 (448)
+.+++.|+.+|..|...
T Consensus 62 ~~e~e~L~~~~~~l~~~ 78 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQ 78 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 42
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.00 E-value=1.2 Score=37.81 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
-+.=|..+|+.|+.+|..|..++..+......|..+|..||.+-.....+|.
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888777788888888888888877765543
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.62 E-value=4.9 Score=40.24 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
.+-.+++..-.+.+++.=.-++..+++|+.+|.+++.+.+.++.++..++.+
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777788888888888888888888888877776643
No 44
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=2.3 Score=47.47 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-hcchhhhhc-cC
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKVKMAEETVKRVT-GLNPLLLAR-SD 328 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~L---kaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~-~~ 328 (448)
+.+..+|+.++..|+.++..|..++..+..+...-.-.++.+ ..++..|+.+|......|+.|. .|+.+.... .+
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE 514 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677777777777888888887777776655444444433 3556666666666555555553 233333222 24
Q ss_pred CCCCCCCC
Q 013166 329 VPGVGMPL 336 (448)
Q Consensus 329 ~~~~~~p~ 336 (448)
.+|-++|+
T Consensus 515 ~sG~g~pv 522 (652)
T COG2433 515 LSGKGTPV 522 (652)
T ss_pred hcCCCcce
Confidence 55666665
No 45
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.47 E-value=1.4 Score=40.58 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql--~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
..+.+|+.++..|+.|...|...+ .+|......+..|+..|..++..|+
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 2333444444444444444444444
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.14 E-value=2.2 Score=39.11 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 297 ADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 297 aql~~Lr~kLk~aE~~v~R 315 (448)
..++.|.+++.++|+.+.+
T Consensus 73 ~~~E~l~rriq~LEeele~ 91 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEE 91 (143)
T ss_pred HhHHHHHhhHHHHHHHHHH
Confidence 3444566666665555544
No 47
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.08 E-value=7.1 Score=37.66 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
+....++.+.+-+.-+.+-..-+.++..++.++..|+-|+..|..++..+.+....|.
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888887777888888888888888888888888887777666553
No 48
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.77 E-value=1.5 Score=47.59 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~-~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
++..|+.+-+.|+.||+.|+++...+.+++.... .+...|..+.+.|..++..++..++.|
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999999888888888877644 677778777777777666655444443
No 49
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.70 E-value=2.6 Score=42.21 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
++++..+...|..++..|..++..++.++..+..||..|......|--++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 44444444445555555555555555555566666666554444433333
No 50
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.56 E-value=2 Score=35.20 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
|+.++..|+.++..+.+++.....+|..|+.+-.....+|.++-..+..|..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555444444443
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.55 E-value=1.9 Score=43.10 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
=+...+++..+++.+..|+..|.++++.++.+|..+...=..|+.+...|..+++.+...|-+|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 3456678888888888899999998888888877777666666666666666666655555444
No 52
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.54 E-value=4 Score=36.40 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
-+.+-+..-.|..+-|+..=.+.-++|+..+..|+.++.++.+++.+|+.++..+..
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777666666777777777777777777777777766666544
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.45 E-value=5.1 Score=34.14 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=37.6
Q ss_pred HHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------SAVNNRILKADIET 301 (448)
Q Consensus 238 RmlsNRESARRSR~RKq------~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~----------L~~EN~~Lkaql~~ 301 (448)
.+..|.+.-+.+-.+|. ..+-+|..+...|..+-..|+.+-..+..++.. +..+=..|+.++..
T Consensus 6 ~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 6 LIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence 33446666666555553 334444444455555555555544444444443 44444445555555
Q ss_pred HHHHHHHHHHHHH
Q 013166 302 LRAKVKMAEETVK 314 (448)
Q Consensus 302 Lr~kLk~aE~~v~ 314 (448)
|..++..+++.+.
T Consensus 86 le~~~~~~e~~l~ 98 (108)
T PF02403_consen 86 LEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444433
No 54
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.21 E-value=5.3 Score=39.11 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~ 279 (448)
+++..+...|..+...|..++.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444333333333333
No 55
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.11 E-value=2.6 Score=42.79 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
-..+...+.+|+..+..++.+...|..++..+..+...+..++..+++++..|..++..+++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888899999999999999999999999999999999999999999888888753
No 56
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.05 E-value=1.6 Score=45.82 Aligned_cols=56 Identities=20% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 249 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 249 SR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
-=+|-+.+...||.-+.+++.||..|..+++.+.+++.+.+.|+..|..++.+-.+
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 44677788888999999999999999999999999999999999988666655433
No 57
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.04 E-value=2.3 Score=43.87 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
-+|+.+++++..||..|...|......-..|.+|...|+.+..+...-|..+++.++.++
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444444444444444444444455566666554
No 58
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.84 E-value=8.6 Score=32.81 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
-.+|..+.+.+=|++=..|.-+.....+|+.+++.|....+.|..+|.....++..++.-|+.+...+...
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888898888888888888999999999999999999999998888888888888776665554
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.74 E-value=4.1 Score=36.71 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 013166 290 VNNRILKADIETLR 303 (448)
Q Consensus 290 ~EN~~Lkaql~~Lr 303 (448)
.++..|++++..|+
T Consensus 96 E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 96 EEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555444443
No 60
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.52 E-value=7.7 Score=37.37 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
+.+-.+..|....+-+-.+.+.+.+...|+.++..-+.++..+..++..+.+++..+..+
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 566677777778888888888888888888888766444544444444444444444443
No 61
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=89.39 E-value=5.4 Score=36.77 Aligned_cols=72 Identities=18% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhccC
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSD 328 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~ 328 (448)
++.....+...+..+..+..+|..+......-..+-..|+.++....+.+...|..+.||...|.-|..+.+
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 444445566777777788888888877777777788889999999999999999999999999988887754
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.17 E-value=6.7 Score=44.61 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
+..+..+|+.|...|+.++...++++..++.|.+.|+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666655555555555554443
No 63
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=88.81 E-value=5.8 Score=40.07 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=53.3
Q ss_pred hHHHHHHHHH-----HhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRML-----SNRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 231 ~d~KR~RRml-----sNRESARRSR~RKq-~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+.||.|-.+ +.|.-| |+-+. ..+.||+.+-..|+.||..|+.+...|--+.+++..+=..|++++.+|..
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKa---Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKA---RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 3666666433 233333 33333 34678888888888888888888888888888888888888888888877
Q ss_pred HHHH
Q 013166 305 KVKM 308 (448)
Q Consensus 305 kLk~ 308 (448)
...+
T Consensus 147 ~~~~ 150 (292)
T KOG4005|consen 147 QQQH 150 (292)
T ss_pred HHHH
Confidence 7655
No 64
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.80 E-value=13 Score=36.17 Aligned_cols=12 Identities=8% Similarity=0.421 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 013166 296 KADIETLRAKVK 307 (448)
Q Consensus 296 kaql~~Lr~kLk 307 (448)
+..+..++.++.
T Consensus 125 ~~~~~~~~~~l~ 136 (302)
T PF10186_consen 125 QNELEERKQRLS 136 (302)
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 65
>PRK09039 hypothetical protein; Validated
Probab=88.72 E-value=5.3 Score=41.40 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE-ETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE-~~v~Rl~ 317 (448)
.+...+|..|+.|...|+.++..++..+..++.+.+..+.+++.|.++|..+- +.+..|.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777777777777777777778888888888888888888777653 2244443
No 66
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=88.55 E-value=1.1 Score=35.10 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
|++.+|+||+.++..-+ |...+ .-....+.+..+..||+.|++++.-++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888887766533 22111 2234566777889999999999887753
No 67
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=88.45 E-value=3.2 Score=35.16 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
++|..++..|+.--..|..++..++..+..|..||..|..=|..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888888888888888777776
No 68
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.40 E-value=1.9 Score=32.61 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+|......|...|..|..+|..|+.+.+.|+++|..+..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999999988766543
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.34 E-value=2.7 Score=38.77 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY--DESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~--~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+.+|..++..|+.++..|..++..|.... .+|..+-..|+.++.+|..+|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766666666655443 2233333334444444444333
No 70
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.22 E-value=3.6 Score=40.05 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+|-..|..|+.-|..|..++..|...+..++..|..|..++..|+.++++
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s 54 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKS 54 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555455554444444444445555555555555555554444
No 71
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=88.05 E-value=0.84 Score=43.29 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
|+|+|.+.++--.+|.-|..+|+ +-..|..++++||.++.+|+..+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999984 45678999999999999999888
No 72
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.79 E-value=5.5 Score=34.72 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l--~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
|+..++.|+.++......-+.|..++..+ .+.++.|..+=..++-++.+|+++++-....+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555554444444444444444 44444444444444444555544444443333
No 73
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.78 E-value=14 Score=38.04 Aligned_cols=69 Identities=20% Similarity=0.344 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK-------YDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~-------~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+..+.|++||.+...|..|...|..+...+.++ ++.+..+-..+..+...|..++..+.+.++||...|
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444555555555544444444444444332 333333333344555555556666666777776665
No 74
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.75 E-value=8.9 Score=43.04 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=38.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 240 LSNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNRIL 295 (448)
Q Consensus 240 lsNRESARRSR~RKq~~LeeLE~qV~~Le------------------------~ENs~L~~ql~~l~q~~~~L~~EN~~L 295 (448)
+.|.+.--+--..+..+|.+||.++..++ ..|..|+.+|..++..|..|.++|-.|
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 33444333333366777888877666444 357888999999999999999998433
No 75
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.66 E-value=4.2 Score=40.21 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 326 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~ 326 (448)
|+.||..+..++..++.+......+=..+..++.+|+.+.....++.+||..-|+-||..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333344444444444444455567776666666544
No 76
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.54 E-value=8.3 Score=31.80 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.+=..++.+|..|-..|..+.-.+...+..|...|..+..++..|..++..++..+..+.
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666666666666666666666666666665555543
No 77
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.53 E-value=17 Score=31.10 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 013166 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL---RAKVKMAEE 311 (448)
Q Consensus 236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L---r~kLk~aE~ 311 (448)
..+|...++..+..=..|+..+..||.++..|..|-..-.+++-.+.+....+..||+.|+.++..= -.+|+..|.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777888888889999999999999999999999999999999999999999999998777653 334444443
No 78
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=87.18 E-value=2.2 Score=43.07 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDE----SAVNNRILKA 297 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~----L~~EN~~Lka 297 (448)
.+.+|+.||.+|++++..+++++.. +..||.+||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888877766444333 4445554443
No 79
>PRK04406 hypothetical protein; Provisional
Probab=86.85 E-value=5.5 Score=33.08 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.|+.++..|+....-+...+..|++-...-..+-..|+.++..|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333334444444444
No 80
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=86.83 E-value=2.6 Score=37.79 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
..+.+||.++..|-.|...|++.+..+.+....|..||..||..+..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999988
No 81
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.81 E-value=52 Score=36.81 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRRKQAHLNELETQAGQL 267 (448)
Q Consensus 238 RmlsNRESARRSR~RKq~~LeeLE~qV~~L 267 (448)
.+..-|+..+.+....+..+.+|..++..+
T Consensus 354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~ 383 (546)
T PF07888_consen 354 QWAQEKQALQHSAEADKDEIEKLSRELQML 383 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555555555566666666666555433
No 82
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.70 E-value=9 Score=31.59 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
-|-+.+..|..+-..|....-.+...+..|+.+...++.+...|+.+++.+..++..+++...+
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3667888888888888888888888888888888888888888988888888888877765543
No 83
>PRK02119 hypothetical protein; Provisional
Probab=86.52 E-value=5.6 Score=32.82 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
+++.+||.++..++.-...|...+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444443333
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.45 E-value=2.6 Score=36.80 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
..|.+++..++++...+..+|..|+.++..|+..-...|+.+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 344455555555555566667777777777765444555443
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.44 E-value=25 Score=32.62 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
...|++.+-+=-.-+++.+..|+.++..+..+...|...+.
T Consensus 36 ~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 36 SQENKECLILDAENSKAEIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333
No 86
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.28 E-value=3.8 Score=33.15 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
++|.+||.++..++.-...|...+..-++++.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~ 35 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQID 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766666666554443333
No 87
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=86.28 E-value=13 Score=39.60 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN---RILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN---~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+-+|..+..+|..+...|+.+...+..++..+...+ ..|++++.+|+.+++.+|+..+.+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444322111 134555555555555555444443
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.26 E-value=6 Score=40.45 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
..|..|..++..+..+...+++++..++.++..+..+-..+.++..+|+..+..++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666655555543
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.35 E-value=15 Score=39.32 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
..|+.++..|+.++..+..++..+..++..+..+-..+.
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 399 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 90
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.28 E-value=17 Score=39.26 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=44.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
|+++-+.++=+.-.++....++....|+.+++.|+.++..|..++.. ...++..++++|..+..++..++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~-------s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIE-------TADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHhhHHHHHHHHHHHH
Confidence 55565666655555566666666777777777777777777666664 45555555555555555555544
No 91
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=85.12 E-value=5.2 Score=40.24 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+|.+-.++....++..-..=+.+..++.++...|+.||..||.+++.|++.+.-+.+.
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445544444455556677777788888888888888887776655443
No 92
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=85.10 E-value=28 Score=31.19 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.--||.-.+..+..|+..+..++..+..|.++-..|+.....|..+|..+-..+.+|+++|..+.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666677777777777777777776666776677777777777667777766665543
No 93
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=84.98 E-value=28 Score=34.04 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+-++..-.+-..|.-..-++++..|...+..-+.+-.....+-..++++...|..|.+.+++++..|+++|..++..
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777777888888888877777777777777777788888888888888888888777776644
No 94
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=84.86 E-value=10 Score=35.06 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
++.+-.|..+-..|+..--...+++..++|+ ++|+.+|..|.+|++.|+..+..+..+.+-+..-.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777777777888777665 68999999999999999999888877777665444
No 95
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.84 E-value=14 Score=39.00 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------------QKYDESAVNNRILKAD 298 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~--------------q~~~~L~~EN~~Lkaq 298 (448)
.-|+|++.-|-|--|.-|. -+++-+.+.++|+..|+.|..+|..++ .-...+..||..|+.+
T Consensus 74 q~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq 149 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ 149 (401)
T ss_pred HHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666665553 344445556777778888777766544 3344567899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 299 IETLRAKVKMAEETVKRV 316 (448)
Q Consensus 299 l~~Lr~kLk~aE~~v~Rl 316 (448)
+.+|.+.++..|++..-|
T Consensus 150 L~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 150 LDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHhHhHHHHHHH
Confidence 999988886665554443
No 96
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.66 E-value=0.049 Score=57.10 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013166 229 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLT 279 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARR---SR~RKq~~LeeLE~qV~~Le-~ENs~L~~ql~ 279 (448)
...+.|+..|+++|+..|.+ +|.||+.+...|..+|+.|+ .++..|..++.
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is 203 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS 203 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence 45689999999999999999 99999999999999999999 77766554444
No 97
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.64 E-value=10 Score=35.22 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
.+++.++..++.....+...+....+++..+......+..++.+|+
T Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 105 QELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444444444444
No 98
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.62 E-value=8.6 Score=36.80 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+.+|..-|....
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677888888888888888888888888888888888888888888777665443
No 99
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.61 E-value=7.6 Score=37.85 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaq 298 (448)
++|+..-..|..||..|...+..+.+....|..|+..|+.+
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444443333333333333333333333333
No 100
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.59 E-value=14 Score=31.01 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+-++.||.+|++.-.-..-|.-++..|.++.+.|..|-..++...+.|+++
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 346778888776555555555555555555555544444444444444444
No 101
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.52 E-value=11 Score=40.82 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
..+.|+.++++|+.||..|+..+..|...+..+..+-..+-.+++.||-++....
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq 352 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ 352 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999888888888888776644
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.51 E-value=13 Score=40.19 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
.+..+.+=+.+|.+||.++..++.+.......+..+++++..+..
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 334444445566666666666666655555555554444444433
No 103
>PRK04325 hypothetical protein; Provisional
Probab=84.50 E-value=6.8 Score=32.36 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
++.+||.++..++.-...|...+.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~ 33 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVA 33 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666655555544443
No 104
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.03 E-value=8.7 Score=34.63 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013166 296 KADIETLRA 304 (448)
Q Consensus 296 kaql~~Lr~ 304 (448)
+.++.+|+.
T Consensus 74 ~~el~~l~~ 82 (120)
T PF12325_consen 74 EQELEELQQ 82 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 105
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.93 E-value=18 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.|+-+|..+++..+.|++.+..+|
T Consensus 95 ~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555443
No 106
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=83.93 E-value=11 Score=33.00 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 323 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l 323 (448)
+.|.+++.+--.+...|.+|..++..+.++...-.. +-.++.++..++++++.......-+.+.-+.+
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666655555444333 56677888888888887776655555543333
No 107
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=83.89 E-value=5.2 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
..+..|..++..|..+|..|+.++..|...+..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666667777777666666666555543
No 108
>PRK00846 hypothetical protein; Provisional
Probab=83.86 E-value=8.4 Score=32.46 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+|+.++..|+....-...-+..|++.......+-..|+.++..|..||
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444445555555554333
No 109
>PRK09039 hypothetical protein; Validated
Probab=83.71 E-value=15 Score=38.07 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..|+.++..++.+..+...++..|++++..|..+...|.+.+..++++.+.++..++.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555555555555555555544444444443
No 110
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.68 E-value=6.8 Score=40.33 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.+...+.++...+.+...|..++..|+.+|.....+...|..++.....+|..|+..+.-|.+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 455566666677777777777888888888888888889999999888888888777665543
No 111
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.63 E-value=7.9 Score=31.80 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
++|.+||.++..++.-...|...+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~ 32 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVT 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555544443
No 112
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=83.15 E-value=11 Score=41.01 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRA 304 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L--------~~EN~~Lkaql~~Lr~ 304 (448)
.+..++|.+.-|.-+ |-.+.|++|+.++...+.|+....-+--+|+.+..++ -.||..++.+++.||.
T Consensus 241 kehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~ 316 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV 316 (575)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Confidence 344455555555443 3346677777777777777666555555555555522 3588888889999998
Q ss_pred HHHHHHHH
Q 013166 305 KVKMAEET 312 (448)
Q Consensus 305 kLk~aE~~ 312 (448)
.|+.||.+
T Consensus 317 ~L~kAEke 324 (575)
T KOG4403|consen 317 ALEKAEKE 324 (575)
T ss_pred HHHHHHHH
Confidence 88887643
No 113
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=83.08 E-value=14 Score=32.15 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSL--LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L--~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+.+.+++.++..++.+...| ...+..|+-....+.-+=+.|.+++..+.+.+..+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554 45555555555555555566666666666666553
No 114
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.01 E-value=25 Score=34.41 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQA----HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA----------VN----- 291 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~----~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~----------~E----- 291 (448)
.-.+|.||....+.++=.-+-+=.+ +|...-.++..|+..|+.|...+.+|+.-+..|. .|
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFG 99 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFG 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhh
Confidence 3467888888887777544433222 2222234455666666666666666654444332 22
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 013166 292 ---NRILKADIETLRAKVKMAEETVKRVTGLNPLLL 324 (448)
Q Consensus 292 ---N~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~ 324 (448)
-.+++.++....+||+.+|..-+.|...|.-|.
T Consensus 100 ryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 100 RYTASVMRQEVAQYQQKLKELEDKQEELIRENLELK 135 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346789999999999999877777777775543
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.97 E-value=12 Score=34.31 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
..+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++..+..++...+.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555554444444444444444444444444444444444333333
No 116
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=82.90 E-value=4.8 Score=42.30 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L 288 (448)
..|+.||..|++++++|+.+...|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 117
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.77 E-value=22 Score=33.97 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
..+|+.++..|+.++..|..++..+..++..+...+..+++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888887777777666555443
No 118
>smart00338 BRLZ basic region leucin zipper.
Probab=82.73 E-value=5.2 Score=31.44 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
.+..|..++..|..+|..|+.++..|+..+..+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777777777766655543
No 119
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.70 E-value=31 Score=33.25 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|+.++..|+....+|+.+...+..+......|...|+..+..|...+..+|-.+..+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455566677777777777777776666555443
No 120
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.63 E-value=11 Score=32.32 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQK------YDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~------~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.+..+|..|..++..|+.+ ......||-.|+.++..|+....
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665544 44678899999999999877653
No 121
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.53 E-value=9.2 Score=35.61 Aligned_cols=41 Identities=29% Similarity=0.428 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVK 307 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk 307 (448)
+..+...|..+|.....++..|.. .|..|++++++|+.+.+
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 333333344444444433333333 45555555555554444
No 122
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.53 E-value=18 Score=34.54 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcch
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA-KVKMAEETVKRVTGLNP 321 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~-kLk~aE~~v~Rl~~ln~ 321 (448)
...|+.++..|..++..|..+...+......+.....++++ ..+.-++.|+.+...|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444443322 23334444444444443
No 123
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=82.52 E-value=12 Score=39.27 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 296 KADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 296 kaql~~Lr~kLk~aE~~v~Rl 316 (448)
|++|..|+.+|..++...+.+
T Consensus 193 K~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 193 KAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccch
Confidence 567777777777776654443
No 124
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.48 E-value=20 Score=36.31 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+.++..++.+...+..++..++.++..+.. ....+..++..++.++..++..+.+
T Consensus 209 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 209 QGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNK 264 (423)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333333222 1223334444555555555444443
No 125
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=82.46 E-value=9.1 Score=33.90 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+..|..+|..-.+.+..+..||..|.=....|.+++..+
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~L 66 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVL 66 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333344444444433333343333333
No 126
>PF15294 Leu_zip: Leucine zipper
Probab=82.42 E-value=5.2 Score=40.92 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
|..++..|+.||..|+.++..++.++....-|+..|.+++.+|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777777777777777777777766
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.36 E-value=8.3 Score=42.07 Aligned_cols=61 Identities=10% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-NNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+.+|+.++..|..+|..|+++++.|+++-..+.. =+..|...-.+|.++...+.+...++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444333322 22333333344444444444343333
No 128
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.30 E-value=0.61 Score=49.05 Aligned_cols=44 Identities=36% Similarity=0.567 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 275 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~ 275 (448)
+++++|=+.+||.+|-|+|.|||.....|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 34555558999999999999999999999999999888887775
No 129
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.97 E-value=18 Score=38.61 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+|..+++.|+.+-..+.+++..+.. ....+..+-+.|+.++.+|..+++.+++.+..+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777765332 244688888999999999999999999887664
No 130
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=81.94 E-value=17 Score=29.93 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 259 ELETQAGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~----~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
++..++..|-.||..|+..|. .+.++|..+..=-..-+.+.+-|..+++.|.+.|.+|...
T Consensus 3 e~~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445667788888887766544 4566777777766666777778888888888888887643
No 131
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.92 E-value=40 Score=33.55 Aligned_cols=45 Identities=11% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+..++.|+..++.++..++.++..+...|..|..++..|..++..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 445555666666666666666666666666666666655554433
No 132
>PRK00295 hypothetical protein; Provisional
Probab=81.83 E-value=12 Score=30.43 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
+++.+||.++..++.-...|...+..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~ 30 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888777666666555543
No 133
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.58 E-value=5.8 Score=42.68 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhcchhhhhc
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE-----ETVKRVTGLNPLLLAR 326 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE-----~~v~Rl~~ln~~l~~~ 326 (448)
+....+-.|...|+.|-..+.++++..+-.++.|..||..|+.+.-.+++..+++. ..-+|+..+|.+-...
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888889999999888999999999999877766666655543 3345666777665444
No 134
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.57 E-value=9.1 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.|+.++..|+....-+...+..|++-...-..+-..|+.++..|+.||+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888877777777776666555555555555555555544433
No 135
>PHA03162 hypothetical protein; Provisional
Probab=81.55 E-value=4.3 Score=37.48 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
-+|+.-+++|..++.+|+.||..|++++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999983
No 136
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.40 E-value=6.3 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+..++..++.++..+..+|..|+.++..|+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444445555555555666666666666633
No 137
>smart00340 HALZ homeobox associated leucin zipper.
Probab=81.33 E-value=2.9 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 279 TDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
+.|.+-+..|..||+.|+.++++||+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777899999999999999964
No 138
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.30 E-value=10 Score=37.49 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+..+..||+.|++++..|+.++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 139
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.17 E-value=12 Score=41.80 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+.+++|+.+++.|+.+...+..++..+...+..+..+....+.+..+|.+.++..
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444433
No 140
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=81.14 E-value=13 Score=38.19 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
+.|+.+..++..|+.||..+..+.......+..+..|+..+..++..|+.++..++...
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777788888888888888888888888888888888888877766665443
No 141
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.76 E-value=22 Score=40.60 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=5.6
Q ss_pred cchhHHHHHHhhh
Q 013166 34 QSEWELEKFLQEV 46 (448)
Q Consensus 34 ~SEW~FerfLeE~ 46 (448)
+-|.+|| +|+|+
T Consensus 189 ~n~~~~~-~l~~~ 200 (697)
T PF09726_consen 189 ENEFYMQ-LLQQA 200 (697)
T ss_pred HHHHHHH-HHHHh
Confidence 3355552 45554
No 142
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=80.74 E-value=5 Score=41.72 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 296 KADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 296 kaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.++.+|....+.+|.++.|.
T Consensus 65 qrq~~elneEkrtLeRELARa 85 (351)
T PF07058_consen 65 QRQVQELNEEKRTLERELARA 85 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555554
No 143
>PRK02119 hypothetical protein; Provisional
Probab=80.67 E-value=10 Score=31.28 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
+..|+.++..|+....-+...+..|+.-...-..+-..|+.++..|..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899888888888777777766555555554555555555533
No 144
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.65 E-value=14 Score=37.72 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+.|.++..++..++.+...|..++..+..++..+..+-..|++++.++.+.+
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555554443
No 145
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=80.62 E-value=19 Score=35.62 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYD---ESAVNNRILK 296 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~---~L~~EN~~Lk 296 (448)
...|+.||..|++++..|+.+.. .+..||..||
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443333 3444444444
No 146
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.47 E-value=33 Score=35.44 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH--------------
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELE--------------TQAGQLRAEHSSLLKGLTDVNQ-------------- 283 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE--------------~qV~~Le~ENs~L~~ql~~l~q-------------- 283 (448)
...++.-|+.+-+--++-|..||-+|+.|| .+...|+.||..|....+.+..
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 344444455555544555555555555554 3455677777777776666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 284 KYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
++..++......|.+++.|...|+.......|..
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666667777666666666655543
No 147
>PLN02678 seryl-tRNA synthetase
Probab=80.44 E-value=30 Score=37.50 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCC
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVP 330 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~ 330 (448)
..+-+|..+...|..+-..|+.+...+..++..+.. +-..|++++.+|..+++.+|..++.+. .++.++..+..++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344444444444444444444444444444433111 112344455555555555554444432 2233333334444
Q ss_pred CCCCCCCC
Q 013166 331 GVGMPLVN 338 (448)
Q Consensus 331 ~~~~p~~~ 338 (448)
.-..|+++
T Consensus 113 ~~~VP~G~ 120 (448)
T PLN02678 113 HDSVPVSN 120 (448)
T ss_pred CccCCCCC
Confidence 34445443
No 148
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.30 E-value=26 Score=35.98 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+.+.+|+.+...|..+-..+......+..++..+..+...|+.++..+..+|..
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444433
No 149
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.29 E-value=22 Score=39.59 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 244 ESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+.+.+.|..=...+.+++..+..|+.|...++.++..+......|..||..|+.++..+|..|..
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555555555666777777888888888888888888888888888888888888888766543
No 150
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=80.03 E-value=6.3 Score=38.59 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.--.||..|..++..+...+..|..||..|+. |...++.+-+++.||.+
T Consensus 122 eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~~ 170 (200)
T PF07412_consen 122 EALEENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 34457888888888888888888888888875 44445566667777764
No 151
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.02 E-value=24 Score=42.04 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 245 SARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 245 SARRSR~RKq~~LeeLE~qV-~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
..+.+..+..+.+.+++.+. ..+..+-.++..++..|.++...++..+..|+.+..+++.++..
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555444 44444444555555555555555555555555555555555444
No 152
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.02 E-value=14 Score=35.39 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLR 268 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le 268 (448)
.+.++.+.+|+.++..+.
T Consensus 79 ~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344455555554443
No 153
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=79.99 E-value=33 Score=36.58 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCCCCCCC
Q 013166 294 ILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPLV 337 (448)
Q Consensus 294 ~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~~~p~~ 337 (448)
.|++++.+|..+++.++...+.+. .++.++..+..++.-..|++
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g 117 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVG 117 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 455555555555555554444432 23333433444433445543
No 154
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=79.93 E-value=21 Score=37.12 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 243 RESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
-|+++|=....+.++.++|.....-+........+-..+.+++..+..||--|++|+...+.|....|.+|
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~V 251 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888777766666666667778888888999999999999998888866555443
No 155
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=79.93 E-value=11 Score=39.30 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+.|...+..|+.+|..|+.++.....++..|..+|+.||.....+.++..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555566666655555555544433
No 156
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.92 E-value=12 Score=39.45 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
++.++.|..+.+.|+.--++|+.-.+.|......|+.+=..|+++++-|..|+.++.
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344555555555555555555555555555555566666666666666666666643
No 157
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.72 E-value=13 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDV---NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l---~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
.++++|+.++..|+.+...+..++..- ..++..+..++..|+.++++-..++.+++....++..++.|
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l 513 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666777777766666665532 23555677788888888888777788888777777766653
No 158
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.61 E-value=33 Score=35.15 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
..++.++.++.+.+.+...++.++.+...++..+..+-..|...+.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555544444444444443333333
No 159
>PHA03155 hypothetical protein; Provisional
Probab=79.56 E-value=13 Score=33.65 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
.-+++|+.++..|+.||..|++++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999999854
No 160
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=79.54 E-value=25 Score=33.29 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 230 SVDDKRARRMLSNRESARRSRR-----RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 230 ~~d~KR~RRmlsNRESARRSR~-----RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L 288 (448)
..+.-|.|+-++-+.-++++|. |=....++||.-+.-.+.|...++++|+.+++++..|
T Consensus 40 EeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl 103 (159)
T PF04949_consen 40 EEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHH
Confidence 3456667777888888988884 2233445667666777778888888887777655544
No 161
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.30 E-value=6.4 Score=38.92 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+++...+..+-..|..++.....++..+..++..|+.|.+.+.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333333333344444444444444444444444444444433
No 162
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=79.13 E-value=35 Score=36.92 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
..|.+-+..+.+++..+..+-+.|..++++|++++..+++...++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44666666667777777778888888888888888888877776654
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=79.12 E-value=12 Score=43.29 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.||...+..|..++..+..++..++..|..+...+.....++..|.++++.||.+|..++.++
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466778888888888888888888888988888888888888889999988888877754433
No 164
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.06 E-value=67 Score=31.40 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+.++.++..|+........+...+.+.+..|..++..|..++...+.+...+..
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444333
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.98 E-value=35 Score=33.90 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
....+...|..++..+......|..+...-..+...|+.+|..+++
T Consensus 72 ~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 72 MQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666666666666554
No 166
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=78.96 E-value=7.2 Score=43.68 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+|..+|++|..|+.-|+-++...++--..|+..++.|..++..+++++-.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999988888777777777777777776666655443
No 167
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=78.89 E-value=22 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 259 ELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 259 eLE~q-V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
|||.+ ...|+.--....++....+..|..+...=..-+.+...|++++..+...|.+|.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544 334444444555566666666666666555556666666666666666655554
No 168
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=78.48 E-value=2.7 Score=42.67 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.++.++|.+|+.|+.-|..|..+|+.-...|..+...-..+|+++-++..|++-+|+.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 4567899999999999999999998777777776666666999999999998776544
No 169
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.48 E-value=16 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+..+..++......|+.|.++|..|+.++..
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445666666666666666655543
No 170
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.40 E-value=50 Score=32.86 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-------NNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-------EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
=.....+|+|++.+.+.|..|-..+..+|....+.++.++. |+...+..+..|...+.-+.+.|++++
T Consensus 27 ~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 27 LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455889999999999999999998888888877776654 444445555555555555555555554
No 171
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.40 E-value=40 Score=31.78 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+|..+|..|+.+|..|..++..+..+...+......|+.+...|..+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 45555555555555555555555444444444444455444444433
No 172
>PLN02320 seryl-tRNA synthetase
Probab=78.32 E-value=36 Score=37.56 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCC
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPG 331 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~--~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~ 331 (448)
..+.+|..+...|..+...|+.+...+..++.... .+-..|++++..|..+++.+|+.++.+. .++.++..+..++.
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h 172 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTH 172 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 44444555555555555555555555555443311 1234566666666666666666655543 24444444444444
Q ss_pred CCCCCC
Q 013166 332 VGMPLV 337 (448)
Q Consensus 332 ~~~p~~ 337 (448)
-..|.+
T Consensus 173 ~~VP~G 178 (502)
T PLN02320 173 PDVPVG 178 (502)
T ss_pred ccCCCC
Confidence 455554
No 173
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=78.16 E-value=16 Score=41.08 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
..|.+||.+-+.|..|.+++..+++++++.+.....|=..||-.++.-+..++.+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 6788999999999999999999999998888777777777777777766555544
No 174
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.03 E-value=2.8 Score=33.77 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
|...|+.+|.+|..+...|+.||..||.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555666666666654
No 175
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.96 E-value=30 Score=30.97 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKVKMAEETVKRVTGLNPLLLA 325 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~L----kaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~ 325 (448)
..+..|+.+...+..++..++.....+....... ..+-..|...+..++..++-|..-|.+|+-
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444433333 233344555555566666666666666653
No 176
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.94 E-value=25 Score=32.25 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhhhhc
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG-LNPLLLAR 326 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~-ln~~l~~~ 326 (448)
.|-.....|+..-......+..|+..+...+.....-...+..|++.++.++..+++... .+++|+..
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 333444444444455555566666666666666666677777777777777766666543 36666544
No 177
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.92 E-value=36 Score=34.20 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+...+..|+.++..++.+-..|..++..+...+..+..+=..|+.++..++..+..++
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777776666666666666666666665555543
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.86 E-value=8.8 Score=38.29 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
+-+.+|..|++.|+.|...|+-+++.++.++..+....+.|-.++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999999988888888888888777777664
No 179
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.84 E-value=20 Score=39.84 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+..||.++..|+.||..|..+|..+..+++....--..+..++..|..+|.
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555566666666666666666665555443333333333344444433
No 180
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=77.69 E-value=13 Score=34.81 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVN-QKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~-q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+||.....++...++|+.++..+. ..+..+..++..|+.+++.|+.+|+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554433 2444455555555555555555543
No 181
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.66 E-value=57 Score=35.90 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..|++-+.+.++|+.+...|+.+++ .+..++..+.++|++|...++.+++.++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq-------~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELD-------VLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555544433 3444444555555555555555555543
No 182
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.65 E-value=19 Score=38.89 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAG--------------QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 252 RKq~~LeeLE~qV~--------------~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
=|.+|-++|+.++. +...|.+.+..+|..|.++|...--||..|-..+++-|+-|...+
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQ 462 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQ 462 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888765 233466678888888888888888888877766666555554443
No 183
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.64 E-value=7.6 Score=34.98 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
.+.|..-|+.+|.+|.++...|+.||..||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777777788888888874
No 184
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.40 E-value=36 Score=42.14 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQA-------------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~-------------~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql 299 (448)
.++++.+.+.++.|++-+.-+++ .+++|+.++...+.+...+..++..+..++..+..+-..|+.++
T Consensus 320 e~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777665554332 23334444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 013166 300 ETLRAKVKMA 309 (448)
Q Consensus 300 ~~Lr~kLk~a 309 (448)
.++...+..+
T Consensus 400 aelqqel~el 409 (1486)
T PRK04863 400 ADYQQALDVQ 409 (1486)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 185
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.72 E-value=12 Score=37.42 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhhHHH
Q 013166 115 RAYLKTKLDLACAAV 129 (448)
Q Consensus 115 ~a~LK~kLd~~cAAv 129 (448)
+.-|..||+.|++.|
T Consensus 18 ~~~L~~kLE~DL~~~ 32 (248)
T PF08172_consen 18 QKELNAKLENDLAKV 32 (248)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999997
No 186
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.60 E-value=58 Score=30.82 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=48.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------------------HHH
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQ-------LRAEHSSLLKGLTDVNQKYD----------------------ESA 289 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~-------Le~ENs~L~~ql~~l~q~~~----------------------~L~ 289 (448)
+-.=.|+||.-..+-+..|+++..+|.. |+......+.+|..+.+.|. .+.
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~r 97 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLR 97 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344678888888888888888876654 44444445555555444332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 290 VNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 290 ~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.+-..|+.+-..|+.+|+.++++|.|...|
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666665433
No 187
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=76.44 E-value=20 Score=34.82 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.+..||.+|+.|+.. +.++-..+.+-...|..|+.++..|..+|+.++.-|+++..|
T Consensus 80 lvinlE~kvD~lee~-------fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 80 LVINLEEKVDLIEEF-------FDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555433 333222222334578888888888888888888888887654
No 188
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=76.39 E-value=65 Score=32.89 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 230 SVDDKRARRMLSNRESARRSRRRKQAHLN-ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 230 ~~d~KR~RRmlsNRESARRSR~RKq~~Le-eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
++|.|-.-|.+-.+.---++..|-|.-.- +|+...++-..--.+|..++++|+++.+++.-.=.-||+++..|-+|+..
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 44666666777777777777777776655 66666665555566677777777777777777777778777777777665
Q ss_pred HHHHHHH
Q 013166 309 AEETVKR 315 (448)
Q Consensus 309 aE~~v~R 315 (448)
-...+.+
T Consensus 91 Rn~Li~~ 97 (277)
T PF15030_consen 91 RNRLITH 97 (277)
T ss_pred HHHHHHH
Confidence 4444333
No 189
>PRK00736 hypothetical protein; Provisional
Probab=76.35 E-value=20 Score=29.15 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
+++.+||.++..++.-...|...+..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~ 30 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAE 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888877666666555543
No 190
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.32 E-value=17 Score=29.90 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
.+++.++..|+....-+...+..|++-...-..+-..|+.++..|.
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888887777777766655554444455555544443
No 191
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.32 E-value=66 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.+..+...+..+..|+..|...++.++.++..+|
T Consensus 67 el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 192
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.21 E-value=17 Score=37.54 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+-+.+.-++..|+..|.+||.++..|.+++..+.+.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667777777777777776665554443
No 193
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=76.21 E-value=53 Score=28.71 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+.+...+.+.+..|..|...+...++-.......+..|+.+.++.+++++-+
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777888888887777777777777777888777777666554
No 194
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.17 E-value=44 Score=32.32 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=21.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 245 SARRSRRRK-QAHLNELETQAGQLRAEHSSLLK 276 (448)
Q Consensus 245 SARRSR~RK-q~~LeeLE~qV~~Le~ENs~L~~ 276 (448)
|||.-+.+. +..+.+|..++..|..||..|+.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554 34567777777777777777654
No 195
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.91 E-value=22 Score=36.20 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+++.+|+.|..+...+..++..+..++..+..+=..|+.+|.+|+..+..
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433
No 196
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.86 E-value=25 Score=36.66 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
..|..-+.+.+.+|..|..++..|++++.++.-+|..||.++..+|
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 3455555666666666666666666666666666666666665543
No 197
>PRK00295 hypothetical protein; Provisional
Probab=75.74 E-value=21 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|+.++..|+....-+...+..|+.-...-..+-..|+.++..|..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888887777777777766655554444444455444444333
No 198
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.68 E-value=4 Score=36.93 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
|..-+++|..++..|+.||..|++++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999987644
No 199
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.66 E-value=34 Score=39.95 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 292 NRILKADIETLRAKVK 307 (448)
Q Consensus 292 N~~Lkaql~~Lr~kLk 307 (448)
|..|..++++|.-|++
T Consensus 439 ~~ql~~eletLn~k~q 454 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQ 454 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 200
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=75.66 E-value=33 Score=33.22 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.-|++-++.||.+|...+.-.......|...+........--...+.++..|+..|+.+...+..+
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANA 128 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999888888888887777777666666666777777777666665554444
No 201
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=75.63 E-value=21 Score=30.27 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQ-AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 252 RKq~~LeeLE~q-V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|....++.++.+ -..|..+...|...|..|..++..+..||..|+.+-+-|..-
T Consensus 5 ~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 5 RNSEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555543 667777778888888888888888888888877777777544
No 202
>PLN02678 seryl-tRNA synthetase
Probab=75.19 E-value=44 Score=36.28 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~---q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..+|..+++.|+.+-..+.+++..+. +....+..+=+.|++++..|..++..+++.+..+
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888776533 3445677778889999999999999998877664
No 203
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.13 E-value=26 Score=34.78 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=46.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN-------RILKADIETLRAKV 306 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN-------~~Lkaql~~Lr~kL 306 (448)
.|.+.+..-=.-|+.--.+.......|+.+...++.+-..|..+...+.+....|..+. ..|.+++.++..++
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i 91 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEI 91 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555666777788888888888887777777766666666655544 44444555555444
Q ss_pred HHHHHHHHH
Q 013166 307 KMAEETVKR 315 (448)
Q Consensus 307 k~aE~~v~R 315 (448)
..+++.+.+
T Consensus 92 ~~l~ee~~~ 100 (246)
T PF00769_consen 92 ARLEEESER 100 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 204
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.11 E-value=21 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+.+..+...-..|++++.+|..++..+++.+.+.
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666667777777777777777666665
No 205
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.09 E-value=15 Score=29.74 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 269 ~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+...+..++..++++...+..||..|+.++..|..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566666677777777778888888888877754
No 206
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.06 E-value=32 Score=37.25 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCC
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV----NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDV 329 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~----EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~ 329 (448)
..+-+|+.+...|..+-+.|+.+...+.+++..... +-..|++++..|..+++.++...+.+. .++.++.....+
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi 108 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNI 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 344555566666666666666666666555543222 224577788888877777776666543 456667666777
Q ss_pred CCCCCCCC
Q 013166 330 PGVGMPLV 337 (448)
Q Consensus 330 ~~~~~p~~ 337 (448)
+....|.+
T Consensus 109 ~~~~VPvg 116 (429)
T COG0172 109 PHESVPVG 116 (429)
T ss_pred CccccCcC
Confidence 66666665
No 207
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.03 E-value=34 Score=36.30 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDV------------NQKYDESAVNNR-ILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l------------~q~~~~L~~EN~-~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+.+|+.++..|+.+...+..++..+ +.++..+..+.. .+..++.++++++..++..+..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543 344444444333 4566666666666666655443
No 208
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=74.82 E-value=27 Score=28.71 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.|..+++.|+..|..|...++...++...+......-.+....||-+++..++.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~ 55 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERC 55 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467788999999999999999999999999998888888888998877775544
No 209
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.33 E-value=48 Score=39.65 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
++++..++..|+...+.+..++..+.+.+..+..+-..++.++..++.++..++..
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444455555555555555555555444433
No 210
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.29 E-value=26 Score=33.54 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
++++....|..|...+..+...
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQD 110 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 211
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=74.21 E-value=44 Score=39.94 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+-.+..|-.+.||+--..--+++-..++++..+.-.|+.++..|..++..|.+++..+...+..|.-.-..|...+..+
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999988888888888888888888888988888888888888888877776666654444444433333
No 212
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=74.02 E-value=3.6 Score=31.17 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
.|+.|..++.+++.+...|..||-.||.
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp ---------------HHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 213
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.81 E-value=14 Score=32.36 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.++++.+++.+++.|+.+|..|..++..|+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555555544433
No 214
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.67 E-value=81 Score=31.35 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..+..|+.++..|+..|..|..++.++...+. .+...+...+..|...|..+...+.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~---~~~~~~~~~i~~le~el~~l~~~~~ 279 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELEQRLD---EEREEYQAEIAELEEELAELREEMA 279 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHHHHHH---HHHHHHHHhhhccchhHHHHHHHHH
Confidence 34444555555555555555555555444433 2333344444444444444443333
No 215
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=73.58 E-value=37 Score=30.92 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
|+.+=..++.+-..-.-+-.+++.++..|+-|++.++.-...|.++++|+|-.++..+.-+
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444455555556777777777777788889999998877766443
No 216
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.47 E-value=47 Score=26.85 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.+..++...+..|-.+.++|.+...+...|..+=..|+.++++||.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455667788888889999999999999999999999999988763
No 217
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.37 E-value=14 Score=37.06 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
+..|||.++..+..+...|+.++.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666665555555544443
No 218
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.37 E-value=12 Score=29.82 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+++||.++..+.... ..+..||..|+..++.| ++.|++|..++
T Consensus 2 i~elEn~~~~~~~~i--------------~tvk~en~~i~~~ve~i-------~envk~ll~lY 44 (55)
T PF05377_consen 2 IDELENELPRIESSI--------------NTVKKENEEISESVEKI-------EENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 455555555554443 23444555555555554 44455555544
No 219
>PRK04325 hypothetical protein; Provisional
Probab=73.05 E-value=23 Score=29.30 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
+...++.++..|+....-+...+..|+.-...-..+-..|+.++..|
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887777777766655544444444444444444
No 220
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=72.81 E-value=68 Score=28.41 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
....|..++....+++..|..+|..|++++..|+....+.++...+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~ 96 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARS 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444555555666667777778888888888887775555555433
No 221
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=72.65 E-value=15 Score=35.29 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
-+.=.|.|+..|+.+|..|+.+++.|. ....+|..+-.++..|..+|-.+++
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li----~~Ar~Ne~~~~~~~~l~l~LL~a~s 92 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELI----ENARENEAIFQRLHRLVLALLAARS 92 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC--S
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567889999999999999888765 5577899999999888777665543
No 222
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=72.59 E-value=33 Score=35.91 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAE-----------HSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~E-----------Ns~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
..++.|+++++|...-..=+||..++.-=+..+.+|+.= ......++..|+.++..|..+=..|..+++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888877777777755554444455555430 011123444444444444444444444555
Q ss_pred HHHHHHHHHHHHH
Q 013166 301 TLRAKVKMAEETV 313 (448)
Q Consensus 301 ~Lr~kLk~aE~~v 313 (448)
-+.++|+.|.+..
T Consensus 200 ~~~k~L~faqekn 212 (323)
T PF08537_consen 200 ITKKDLKFAQEKN 212 (323)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544433
No 223
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.56 E-value=40 Score=36.61 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
=++++.++|.++..|+.||..|..+...
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888999999999999998877655
No 224
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=72.48 E-value=20 Score=37.46 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQA---HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 248 RSR~RKq~---~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.+|.+.+. ++++|..++..++.++.-|+.++...+
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 34444443 444566677777777777777776654
No 225
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.39 E-value=59 Score=38.26 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHH----HHHHH-----------------HHH
Q 013166 229 DSVDDKRARRMLSNRESARRSRRRKQAH-LNELET-------QAGQLRAEH----SSLLK-----------------GLT 279 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARRSR~RKq~~-LeeLE~-------qV~~Le~EN----s~L~~-----------------ql~ 279 (448)
|..+.+++-|.+.|+-.-+.+-.-|.+. +..++. +++.+..+- ..|.. .|+
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt 179 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELN 179 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHh
Confidence 4567788889999987776665544321 222222 222222211 11211 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+++.+|+.+..||..++.+++.+-.|++.
T Consensus 180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 180 EFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888887777777666554
No 226
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.34 E-value=88 Score=29.51 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 013166 269 AEHSSLLKG 277 (448)
Q Consensus 269 ~ENs~L~~q 277 (448)
.++..|..+
T Consensus 89 ~e~k~L~~~ 97 (158)
T PF09744_consen 89 QERKDLQSQ 97 (158)
T ss_pred HHHHHHHHH
Confidence 333333333
No 227
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=72.23 E-value=23 Score=34.46 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.|...|+..+..|+.+...+++++..++
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666665554
No 228
>PRK00736 hypothetical protein; Provisional
Probab=72.09 E-value=26 Score=28.47 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
++.++..|+....-+...+..|+.-...-..+-..|+.++..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766666665554444333334444444444
No 229
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.89 E-value=38 Score=35.00 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=12.7
Q ss_pred CCCchHHHHHHHHHHh
Q 013166 227 GLDSVDDKRARRMLSN 242 (448)
Q Consensus 227 ~~d~~d~KR~RRmlsN 242 (448)
.+-..++|=+|=|++|
T Consensus 85 ~l~evEekyrkAMv~n 100 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSN 100 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556688888899998
No 230
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=71.70 E-value=46 Score=27.54 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
.++.+..+|..|+..-..|..++..+..++..+..
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777665544
No 231
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.63 E-value=24 Score=27.85 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
+.++.+.+|+.+++.|+.+|..|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666544
No 232
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.57 E-value=68 Score=38.49 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~EN-s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+=++++..++.|+.++..++.+- ..|..++..+..++..|..|+..|..++..|+.++.+..+....
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~ 433 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKE 433 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567788888888888766 88888888889999999999999999999999888887655443
No 233
>PRK04406 hypothetical protein; Provisional
Probab=71.54 E-value=27 Score=29.02 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
+.+||.++..++.-...|...+..-++++..|..+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333333333
No 234
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.50 E-value=28 Score=41.09 Aligned_cols=70 Identities=27% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---VNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~---~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
.||...+++|+...+.|..+...+..+|.+++++..... .==..|-...-.|..||+.+|++|.-|..++
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEale 478 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALE 478 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555554321 1111222333345555555555555554444
No 235
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.49 E-value=13 Score=32.59 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGL-TDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql-~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.....++..+.+++.|...|...| ...+........+...+..+...|+.+|+.++..+
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665 44555554555455555555555555555554433
No 236
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.34 E-value=34 Score=32.15 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 289 AVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 289 ~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
..++..++.++++|..+|+.++..++.+.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~Lk 181 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALK 181 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665555543
No 237
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=71.30 E-value=20 Score=38.34 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 244 ESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
++|.--|.|-.+.-...|.+++.+..|...|+.++.........+..||..||.-+..|.+-.+++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 556666777777767777778888888888888888877777777778877777777776666654
No 238
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.27 E-value=14 Score=41.66 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.+.+++|..+-..|+.|+...+.--..|++++..++.|=+.+|++++.-|++
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777666666666677777777777777777666655
No 239
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.22 E-value=34 Score=35.37 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
++..|..++..+..++...+.++..+++++..+...=..++.+..+++..+..+|..+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666666555555666666666666665433
No 240
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.00 E-value=28 Score=38.04 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+|..++..+..+...+..+|..|++....++.+|+..++.-++.
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334445555555666667778778777777777777766555554
No 241
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.58 E-value=53 Score=39.78 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcc---
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARS--- 327 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~--- 327 (448)
.+...++++....+..++.+...+..++......+..+..+-+.|+.++..||+++..+.......++-|.+|.+..
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33334444444444445555555555555555555566666666677777777777766665555666666666553
Q ss_pred ---CCCCCCCCCCC-CCCccCcCCC
Q 013166 328 ---DVPGVGMPLVN-VPLDASRNAT 348 (448)
Q Consensus 328 ---~~~~~~~p~~~-~~~~~s~~~~ 348 (448)
.++|+---++. +.-|..-|+|
T Consensus 611 esG~i~Gf~GRLGDLg~Id~kYDvA 635 (1293)
T KOG0996|consen 611 ESGRIPGFYGRLGDLGAIDEKYDVA 635 (1293)
T ss_pred HcCCCCccccccccccccchHHHHH
Confidence 45665333333 3444444443
No 242
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=70.16 E-value=25 Score=37.86 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL----------------RAEHSSLLKGLT---DVNQKYDESAVNN 292 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~L----------------e~ENs~L~~ql~---~l~q~~~~L~~EN 292 (448)
++|.+||+...-|==||.|..=...|.+|-.-|-.. ...+.+|++..+ ++..+-..|+..|
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n 306 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTN 306 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHH
Confidence 566666777777888888888888888887665433 223333333322 3333444455666
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 293 RILKADIETLRAKVKM 308 (448)
Q Consensus 293 ~~Lkaql~~Lr~kLk~ 308 (448)
++|..++++|..++..
T Consensus 307 ~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 307 QELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666544433
No 243
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=70.12 E-value=2.7 Score=36.46 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql 299 (448)
.||+.|...+..|..+|..|..++..|+.++..+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578888888888888888888888877776666655555554433
No 244
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.12 E-value=83 Score=28.26 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=51.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 238 RmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
-+..|+.-|.+.=.+ +.+++++..++..+-.+-..|..++..+.+++..+ ..+-...+=...|+..+..+++.-..+
T Consensus 39 l~~~n~~lAe~nL~~-~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 39 LLAENEELAEQNLSL-EPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777655333 47777777888877778888888888877777777 555555555666777777776665554
No 245
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=70.01 E-value=32 Score=32.84 Aligned_cols=56 Identities=16% Similarity=0.398 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVN--N-RIL--KADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~E--N-~~L--kaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.+.|+.+-..|..++..|++....+..+ . +-| |.++++|.++|+.+|+.++++...
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444555554444433321 1 122 688888888888888888887643
No 246
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.95 E-value=67 Score=38.48 Aligned_cols=50 Identities=30% Similarity=0.429 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..|+.|...|..++..+.+++..+..+=..|+.++..|++++..++..++
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~ 867 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK 867 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 34444445555555555555555555555555666666665555544333
No 247
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=69.83 E-value=39 Score=37.66 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
++.+.......+...+..|.++-..|..+|..+..+|..+|.--..|+.+.+..++.+.++..
T Consensus 439 rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~ 501 (707)
T KOG0957|consen 439 RMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILT 501 (707)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhh
Confidence 344444555555555556666666677777788888888888888888888777777777644
No 248
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.80 E-value=13 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 275 LKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 275 ~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
+..+..+.+.+..|..+|..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777788888888888887754
No 249
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.69 E-value=64 Score=31.23 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.+.+..|+.++..++.....|..++..|++++..+...-..|.+++...+++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777777777777666666555433
No 250
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.57 E-value=91 Score=32.29 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.++..++...+.+...+..++..+...+.....+-..++.++.+++.
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444444444443
No 251
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=69.53 E-value=65 Score=34.92 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQ--LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 230 ~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~--Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
|.+.++.+-.+.-=+-=.-.|+|=-+.+.|--..|+. .+.|.+.|...+..+++.|.+|..-|+.|..+... +..
T Consensus 303 P~~~~el~~~l~~V~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~---R~~ 379 (431)
T PF14782_consen 303 PDEMEELREILEKVDELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKI---RCN 379 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Confidence 5677777776665555566677777777777777765 47899999999999999999999999999766543 455
Q ss_pred HHHHHHHHHhhcchhhhhccC
Q 013166 308 MAEETVKRVTGLNPLLLARSD 328 (448)
Q Consensus 308 ~aE~~v~Rl~~ln~~l~~~~~ 328 (448)
--++.+..|+.+|+++|..+.
T Consensus 380 N~~~l~~~lk~vn~~iq~a~~ 400 (431)
T PF14782_consen 380 NHEELLSSLKEVNQIIQKASR 400 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 567778889999999887754
No 252
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.52 E-value=39 Score=33.81 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.+++..+..|.+.||-+++++..+|.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~ 85 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLN 85 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333444444444444444444433
No 253
>PF15058 Speriolin_N: Speriolin N terminus
Probab=69.40 E-value=11 Score=36.94 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
.+.|..|++.|-.||++|++++. |..||.+||.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLks 39 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKS 39 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHH
Confidence 35566777777788888877775 4456666653
No 254
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.36 E-value=41 Score=36.87 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+|++++-.++..|+.++..+...-..+.+++.++...=..+..++..++
T Consensus 354 ~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 354 QYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444444444444444433433333
No 255
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.34 E-value=1.4e+02 Score=30.81 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.+.+...+.+=+.++.++.+.+.+|..++..
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555666666666555533
No 256
>PLN02939 transferase, transferring glycosyl groups
Probab=69.32 E-value=47 Score=39.50 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|.+++..|..||..||.+++.|.+++....++-.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERV 259 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467788899999999999999999987765555554
No 257
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.22 E-value=33 Score=32.20 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 268 e~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
..++..+..+++.+.+++...+.|-..||.|.+.|.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777777777777777777777776644
No 258
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=69.21 E-value=53 Score=32.82 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 243 RESARRSRRRKQAHL----NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 243 RESARRSR~RKq~~L----eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
-+|+--.-+||.-+. ..++.+++.|+.++..|..++..+..++...+.-|.++++-.+. + ..+++.+|..
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEk-----k-~~eei~fLk~ 242 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEK-----K-MKEEIEFLKE 242 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-----H-HHHHHHHHHH
Confidence 467777888887555 45778899999999999999999988888777777666543332 1 2345677777
Q ss_pred cchhhhhc
Q 013166 319 LNPLLLAR 326 (448)
Q Consensus 319 ln~~l~~~ 326 (448)
.|+.|.+-
T Consensus 243 tN~qLKaQ 250 (259)
T KOG4001|consen 243 TNRQLKAQ 250 (259)
T ss_pred HHHHHHHH
Confidence 78776543
No 259
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.11 E-value=85 Score=28.74 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=38.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELET-------QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~-------qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+++.+++..-+.+...-.+|++.++.|+. +|..|+.+...+..++..+...|..+ +..++.++..+.
T Consensus 110 ~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~ 183 (218)
T cd07596 110 DDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444555556666666666666666642 56666666666666666666555544 334555555543
No 260
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=68.88 E-value=52 Score=28.70 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 326 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~ 326 (448)
..+|+.++..++.++-.|..+...+-.++..+..+...-+. -.+++.+|+.++..++.-.....+++.+
T Consensus 12 ~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 12 SRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333332222 2234444555555555444444444443
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=68.85 E-value=53 Score=28.45 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSS----LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~----L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.++....+..|+-.-+- |...|.+-..+....-.+|.. -..+...-.........+=..|+.++..|+.++..
T Consensus 23 ~~~~~~~~~~~e~~L~~---~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 23 IERREEQLKQREEELEK---KEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443322 233344444455555444443 22333333344445556666777888888888888
Q ss_pred HHHHHHHHhhcchhhhhc
Q 013166 309 AEETVKRVTGLNPLLLAR 326 (448)
Q Consensus 309 aE~~v~Rl~~ln~~l~~~ 326 (448)
+++.|....--..+|..+
T Consensus 100 ~e~~l~~~~~Y~~fL~~v 117 (126)
T PF13863_consen 100 LEEKLEEYKKYEEFLEKV 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 887777765444455444
No 262
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=68.79 E-value=23 Score=30.54 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|...-.||-.|+.++..++.-| ..-+-..|-+++..|+.+
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 3355567888888777666555 445666777777777654
No 263
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=68.76 E-value=31 Score=35.41 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L 288 (448)
|.|+-+.+- +.....|..||+.|+..|+.+++++...+.++..|
T Consensus 68 ~~e~e~~sy---~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 68 NKEFERQSY---SNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445544432 23445566667777777777777666666655554
No 264
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.59 E-value=19 Score=37.03 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 245 SARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 245 SARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
-++.-=..++..|.+|+.++..|+.+......+...
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~ 267 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQE 267 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555555544444433333
No 265
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.49 E-value=28 Score=35.28 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhc
Q 013166 284 KYDESAVNNRILKADIETLRAKVKM----AEETVKRVTGL 319 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~----aE~~v~Rl~~l 319 (448)
.+..+..||..||+++.+|++++.. ++.+-+||+.|
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888888877665554 44455555543
No 266
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.41 E-value=32 Score=36.59 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQK----YDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~----~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+|..+++.|+.|-..+.+++..+... ...+..+-+.|++++.+|.++++.+++.+..+
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666553322 45677788889999999999998888766553
No 267
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=68.14 E-value=65 Score=31.40 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 283 QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..+..+..||..|+.++..|-.+...++.....|
T Consensus 156 e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~L 189 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQLIQEAQKLEARKSQL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444444444444444433
No 268
>PHA02562 46 endonuclease subunit; Provisional
Probab=68.07 E-value=98 Score=33.15 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
..+-+..-+..+.+|+.++..++.....+..++..++.+...|..++..+..++..|
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 333333334444444444444444443444444444444444444333333333333
No 269
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=68.05 E-value=29 Score=36.56 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
+|++.|+.++..|+.+...|..++.... .....-..|..++..+.+++..+++.+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443322 222333445566666666666665543
No 270
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.02 E-value=73 Score=28.36 Aligned_cols=55 Identities=18% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 268 e~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
-.|.+.|+.++..|..-...-...|..|+.++..-.+.|.-++.+++-|++-|.-
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~Q 58 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQ 58 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666677777766666666677777777666644
No 271
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.01 E-value=7.6 Score=40.86 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
.+.-.|..+-..|+.||+.|+.+++.|+....
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888999999999999999998866544
No 272
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.89 E-value=49 Score=39.55 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRR----KQA------HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 238 RmlsNRESARRSR~R----Kq~------~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
-+|+++..|.|.+.- +.. .......++++|+.|...+..+|..+++.|......|+.|+.+++.|..
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~ 490 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKS 490 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345666666664321 111 2344455566666666666666666666665444444444444444333
No 273
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.88 E-value=40 Score=34.88 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKMAEETV 313 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~~v 313 (448)
+|.....|+.++..+.+.+
T Consensus 145 ~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 274
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.57 E-value=70 Score=38.76 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=7.3
Q ss_pred hHHHHHHhhh
Q 013166 37 WELEKFLQEV 46 (448)
Q Consensus 37 W~FerfLeE~ 46 (448)
=+|++||+++
T Consensus 663 ~~~~k~ie~a 672 (1311)
T TIGR00606 663 AVYSQFITQL 672 (1311)
T ss_pred HHHHHHHHHH
Confidence 3677888877
No 275
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.48 E-value=1e+02 Score=34.97 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|+.|-..|.+++..|..++.....+|..|-.-+.+...+|..+|..+.|+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~ 134 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERL 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567788888888877777777777555455555566666555554
No 276
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.45 E-value=1.4e+02 Score=30.29 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=4.5
Q ss_pred CCCCCCC
Q 013166 332 VGMPLVN 338 (448)
Q Consensus 332 ~~~p~~~ 338 (448)
+-.|+.|
T Consensus 274 i~AP~dG 280 (423)
T TIGR01843 274 IRSPVDG 280 (423)
T ss_pred EECCCCc
Confidence 4667766
No 277
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=48 Score=38.77 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=38.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
...+-..=+--+++-...++.|..++..|+.||..|..++.+.......+.-++..||.|+.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444444555555666666666777777777777776666666666666666666655
No 278
>PRK14127 cell division protein GpsB; Provisional
Probab=67.26 E-value=14 Score=32.88 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+.+.|..+..||..|+.++..|+.+|..++..+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345555566666666666666666666555443
No 279
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.22 E-value=49 Score=34.47 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
..+.|...|..++.+++++++.+..||..|...+..
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445566677778888888888888888877666544
No 280
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=67.14 E-value=79 Score=28.89 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lk 296 (448)
.+..+...+..|...+..|+
T Consensus 56 ~~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 56 ELEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 281
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.09 E-value=28 Score=39.04 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
..|++|..++..++.+...|..++..+.++......++..|.+++.-..+-+.+
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l 388 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL 388 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666666666666666666666666666533333333
No 282
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.88 E-value=93 Score=35.94 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.|+.||-.|.+++..|++ .|..+..|+++|..+++-|+.+|..
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544 3444445555555555555444433
No 283
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=66.81 E-value=43 Score=30.48 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
|-|.=-...+.+|+.+|..|..|--.=.++++.+-.+.+.+..+|++|+.-+..|..+|..
T Consensus 7 kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 7 KLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444566777777777777766666666666666666777777777777666666543
No 284
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=66.65 E-value=1.3e+02 Score=29.21 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
++|..++.++-+.|.+.|..=.+.+.+.+.++..-+.|-..+..+.
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A 128 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777788888888888888888888888888777775543
No 285
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=66.32 E-value=84 Score=40.09 Aligned_cols=55 Identities=29% Similarity=0.401 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVN-------QKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~-------q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
++++-.++.+|+.+|..|..++.++. ..+++++..++.|-.++.+|+..|..+|+
T Consensus 1479 lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1479 LEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444 44555566666666666666666666554
No 286
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.21 E-value=10 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~q 277 (448)
.++.+|+.++.+|+.||.-|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666666666543
No 287
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.92 E-value=41 Score=39.31 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=11.7
Q ss_pred CCCcchhHHHHHHhh
Q 013166 31 NRSQSEWELEKFLQE 45 (448)
Q Consensus 31 nrs~SEW~FerfLeE 45 (448)
-||+==+||+-||=+
T Consensus 386 lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 386 LRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHHHHHHhc
Confidence 378888888888765
No 288
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=65.76 E-value=29 Score=30.06 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHS-SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs-~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+|-..=|.+|..|+.-.. ....++. .|..+|..|..+++.|+.+|....
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~-------~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVD-------ELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777663222 2334444 444444444444444444444433
No 289
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=65.39 E-value=48 Score=36.33 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRA-----------EHSSLLKGLTDVN------------------------QKYDESAVNNRILKAD 298 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~-----------ENs~L~~ql~~l~------------------------q~~~~L~~EN~~Lkaq 298 (448)
...+..|-.++..|+. ||..|+.+|.+.- .++..++.||..|+.+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655 8999988887643 3555678899999999
Q ss_pred HHHHHHHHHH
Q 013166 299 IETLRAKVKM 308 (448)
Q Consensus 299 l~~Lr~kLk~ 308 (448)
++.|.+|-++
T Consensus 464 iekLK~kh~~ 473 (488)
T PF06548_consen 464 IEKLKRKHKM 473 (488)
T ss_pred HHHHHHHHHH
Confidence 9999888665
No 290
>PRK10698 phage shock protein PspA; Provisional
Probab=65.20 E-value=86 Score=30.73 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+..|+.++...+.....|..++..|+.++..+...-..|.++...-+++.++
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666777777777777777777766676666655555444
No 291
>PLN03188 kinesin-12 family protein; Provisional
Probab=65.17 E-value=42 Score=40.91 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAE-----------HSSLLKGLTDVN------------------------QKYDESAVNNRILKAD 298 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~E-----------Ns~L~~ql~~l~------------------------q~~~~L~~EN~~Lkaq 298 (448)
-..+..|-.++..|+.| |..|+.||.+.- +++..++.||..|+.+
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566665555554 999988887633 4566778899999999
Q ss_pred HHHHHHHHHH
Q 013166 299 IETLRAKVKM 308 (448)
Q Consensus 299 l~~Lr~kLk~ 308 (448)
+++|++|-.+
T Consensus 1234 ~~klkrkh~~ 1243 (1320)
T PLN03188 1234 IDKLKRKHEN 1243 (1320)
T ss_pred HHHHHHHHHH
Confidence 9999888655
No 292
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=65.16 E-value=42 Score=36.48 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=47.3
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 254 QAHLNELETQ----------AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 254 q~~LeeLE~q----------V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
++|+++|+.- ..+-.-||..|.+.+..-++.+..-..||..|.+..++|..+|. ..|.||+++
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa---aEItrLRtl 489 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA---AEITRLRTL 489 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHHHH
Confidence 4677766532 33334578888888888888888889999999999999987763 346787764
No 293
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=65.02 E-value=70 Score=30.91 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHS---SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs---~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+.+.+|+.++...+..-. .++.++..+.+++..+.-|+.+|..++..|.+....+.
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 34556777778888888888888888887776655543
No 294
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.00 E-value=39 Score=34.59 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK-VKMA 309 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k-Lk~a 309 (448)
-|-.=.-|+|||..=..++++++.| ..++..|+...- -..+|..|++++..++.||-+..+++..+.++ ++.+
T Consensus 126 yR~~LK~IR~~E~sl~p~R~~r~~l---~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 199 (271)
T PF13805_consen 126 YRIHLKSIRNREESLQPSRDRRRKL---QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEA 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHH---HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHH
Confidence 3333456888887755444444433 334444443322 24578889999999999999999999887554 5553
No 295
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.96 E-value=1.1e+02 Score=31.33 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+..-+-+...+|..+.+++...++...++..+...|+++++.|+.......
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~R 227 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPR 227 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 334455667899999999999999999999999999999999987766443
No 296
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=64.92 E-value=71 Score=36.48 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+..|..++..|+.+...|..++..+.+.+.....++..+..++..++..+..
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ 294 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVE 294 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777777777777777777777767777666666666655443
No 297
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=64.81 E-value=59 Score=34.06 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 302 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~--EN~~Lkaql~~L 302 (448)
++..+..|+.+...+..++..+++++..+.. .+.-+.+|++.|
T Consensus 91 ~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~dW~LaEaeyL 135 (372)
T PF04375_consen 91 QQEQLQQLQQELAQLQQQLAELQQQLAALSQRSRDDWLLAEAEYL 135 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHH
Confidence 3344444555555555555555555544443 333344555444
No 298
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.72 E-value=50 Score=36.79 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
++.|..+..+..++..||..|..+|.+++++...+..||..|.+
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~ 261 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE 261 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455566667777888888999998888888888887776643
No 299
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=64.69 E-value=1.1e+02 Score=36.80 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLL--------------KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~--------------~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+...+++|+.++..++.+...|. .++..++.++..-..+=..++.++.+++..|++.+..++
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~ 521 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS 521 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555555554444433 333333333333333333345555555555555443333
No 300
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=64.33 E-value=56 Score=36.29 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=65.9
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+.+--|.+|+-. --..+..|-.+.+.+.+..+...+.+...|--++...+.++..+..+|+.++++.+.|+.+++.
T Consensus 26 ~e~ef~rl~k~fe---d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 26 NEDEFIRLRKDFE---DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQL 102 (604)
T ss_pred cHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3445555555543 3334445555667777778888888888999999999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 013166 309 AEETVKRVT 317 (448)
Q Consensus 309 aE~~v~Rl~ 317 (448)
..++.+--.
T Consensus 103 i~d~l~~~~ 111 (604)
T KOG3564|consen 103 IKDMLKCDI 111 (604)
T ss_pred HHHHHhccc
Confidence 887765543
No 301
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=64.27 E-value=99 Score=28.31 Aligned_cols=35 Identities=6% Similarity=0.230 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
++|+.|..++++...-...++.++..++.....+.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555544444444444444444333333
No 302
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.27 E-value=84 Score=35.58 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
...|+.||-.|.+++..|++ .|..+..|+++|..+++-|..++..
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666654 4556666666666666655554433
No 303
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=64.07 E-value=35 Score=31.83 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q--------~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+-++.|+.++..|+.+...+.+++..... .|+....+-..|..++..|..+|.
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888887776667666644443 244444444444444444444433
No 304
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.96 E-value=83 Score=35.12 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=4.1
Q ss_pred HHHHHhhh
Q 013166 39 LEKFLQEV 46 (448)
Q Consensus 39 FerfLeE~ 46 (448)
|++||...
T Consensus 67 y~~~l~~~ 74 (650)
T TIGR03185 67 YEQYLRGL 74 (650)
T ss_pred HHHHHHHH
Confidence 45555543
No 305
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=63.93 E-value=23 Score=39.48 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=5.0
Q ss_pred hHHHHHHHH
Q 013166 231 VDDKRARRM 239 (448)
Q Consensus 231 ~d~KR~RRm 239 (448)
.|.|-.||-
T Consensus 275 ~d~kv~krq 283 (655)
T KOG4343|consen 275 SDIKVLKRQ 283 (655)
T ss_pred cCHHHHHHH
Confidence 466655554
No 306
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=63.91 E-value=24 Score=39.33 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
.=.+.||.+|+.+=.+.+.| +.+|..|..++.+++.+|..+++
T Consensus 363 sI~kcLe~qIn~qf~tIe~L--------------k~~n~~~~~kl~~~e~~L~r~~~ 405 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDL--------------KEENQDLEKKLRELESELSRYRE 405 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777766555444444 34444444445555444444443
No 307
>PRK00846 hypothetical protein; Provisional
Probab=63.52 E-value=48 Score=27.98 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 013166 274 LLKGLTDVNQK 284 (448)
Q Consensus 274 L~~ql~~l~q~ 284 (448)
|..+|.+|+.+
T Consensus 11 le~Ri~~LE~r 21 (77)
T PRK00846 11 LEARLVELETR 21 (77)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 308
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=63.32 E-value=68 Score=36.46 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
+.++.|+.++.++..-+.+......++.+++++-.-|.+-+..-+.+...|
T Consensus 97 ~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l 147 (632)
T PF14817_consen 97 ELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRIL 147 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555444444444444333333333
No 309
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=63.24 E-value=61 Score=31.34 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRA 269 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ 269 (448)
.++..+..++..|+.
T Consensus 96 ~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 96 EELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 310
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=63.19 E-value=37 Score=33.04 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+|..|.++...+...|-.|...+..|++++..+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444443
No 311
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.07 E-value=25 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 274 LLKGLTDVNQKYDESAVNNRILKAD 298 (448)
Q Consensus 274 L~~ql~~l~q~~~~L~~EN~~Lkaq 298 (448)
|..++..+..+-..+..+|..|+.+
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~ 97 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQK 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 312
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.02 E-value=1.1e+02 Score=31.57 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
|+.+-+.--+++++.++.+.-..|.-|..+|..-+ .|..+=..||.+...||+.|..-+
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke----~llesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555544321 223333445555555555554433
No 313
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=62.99 E-value=34 Score=28.95 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCCCCCCCCCC
Q 013166 286 DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN 338 (448)
Q Consensus 286 ~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~ 338 (448)
+++..||..|+.+++.|.+.|+... .=+|...++|..-|+|..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~----------~~~qIk~diPe~kvkFts 45 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNK----------REFQIKEDIPEKKVKFTS 45 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhhccCCccccCcCCC
Confidence 4677888888888888766554422 224556688888899954
No 314
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.96 E-value=33 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
||-.|+.-...|.+++..+.++...|..||.+|-+=|+.|
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3444444444455555555555555666666666555554
No 315
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.96 E-value=79 Score=31.47 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
..+..|+....+++.+.....+....+..|=..||.++.++|..
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444445555555555444
No 316
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.93 E-value=61 Score=37.19 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013166 262 TQAGQLR 268 (448)
Q Consensus 262 ~qV~~Le 268 (448)
.+.+.|+
T Consensus 586 e~~~~l~ 592 (717)
T PF10168_consen 586 EERKSLR 592 (717)
T ss_pred HHHHHHH
Confidence 3333333
No 317
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.91 E-value=52 Score=37.93 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcc
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM---AEETVKRVTGLN 320 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~---aE~~v~Rl~~ln 320 (448)
..+.||.+...|+.|...++.+-..+-+.|.+|+.||=.|..+|..|+.---. +.-.++|+.--.
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888888888888899999999999999999999875333 445677777544
No 318
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.85 E-value=95 Score=26.35 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 291 NNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 291 EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+..|..++..|+.|...+++.-..|
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L 94 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQL 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776666554444
No 319
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.82 E-value=13 Score=32.01 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
|+.+++.|..+++.++.+|..|..+|...+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777777777777777776543
No 320
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=62.72 E-value=23 Score=29.67 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
...+...+..++..++++...+..||..|+.++..|.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445667777788888888888899999988888874
No 321
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.67 E-value=32 Score=30.74 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
|-.+.-+|...|.+|.++...+..||-.||.+-+-|
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVL 96 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 333444444555555555555555555544444444
No 322
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.46 E-value=78 Score=34.05 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.++..+-..-+..|+.|...|.++|+.-.++....+.+...|..++++-
T Consensus 131 aqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeE 179 (561)
T KOG1103|consen 131 AQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEE 179 (561)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344567888999999988887777777777777776666553
No 323
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=62.17 E-value=58 Score=32.34 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 292 NRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 292 N~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+..=+.+++..+..+..++..+.
T Consensus 141 g~is~~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 141 GLISREELDHARKALLSAKAALN 163 (334)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555555444433
No 324
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.81 E-value=54 Score=26.19 Aligned_cols=31 Identities=10% Similarity=0.329 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
..+..|+..+..++.||+.|+..++.+.+..
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999998877655
No 325
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=61.65 E-value=1.1e+02 Score=29.96 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+.-|+.|-..|.+++..=..+...++.|++.+..++.+=+.|++.
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~ 180 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKS 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888888898888888888888888888887777666555554
No 326
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=61.59 E-value=18 Score=35.02 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
|-.|.+|...+++ ...++++.+|+.+|..|+.+..++.+.+
T Consensus 89 Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~ 129 (181)
T KOG3335|consen 89 EYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFF 129 (181)
T ss_pred hhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777663 4445677777777777766444443333
No 327
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=61.39 E-value=93 Score=25.72 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ-------KYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q-------~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.+++|+.+|..|...-.++.-.|.+|.+ ++-.+..+--..-+++.+++++|+.+|
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~e 64 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAAE 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888888888888887775 333444455555667777777776665
No 328
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.24 E-value=1.1e+02 Score=37.05 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhhcchhh
Q 013166 302 LRAKVKMAEETVKRVTGLNPLL 323 (448)
Q Consensus 302 Lr~kLk~aE~~v~Rl~~ln~~l 323 (448)
++.++..+...++.+..+|.-+
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 329
>PRK10963 hypothetical protein; Provisional
Probab=60.96 E-value=25 Score=34.14 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.|.|++.|+.+|..|..++..|. ....+|..|-.++..|.-+|-.+
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l~l~Ll~a 87 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAA 87 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888888877654 55778999988888888776554
No 330
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.86 E-value=64 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.219 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 013166 256 HLNELETQAGQL 267 (448)
Q Consensus 256 ~LeeLE~qV~~L 267 (448)
+|.+||.++..-
T Consensus 9 Ri~eLE~r~AfQ 20 (72)
T COG2900 9 RIIELEIRLAFQ 20 (72)
T ss_pred HHHHHHHHHHHH
Confidence 444555554443
No 331
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=60.71 E-value=40 Score=30.24 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 274 LLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 274 L~~ql~~l~q~~~~L-~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+..++..+.+.+.-. ..+=..|+.++..|+++|..+|+..+|
T Consensus 66 ~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 66 IPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLKR 108 (108)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444444311 234467888888888888887776543
No 332
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=60.41 E-value=77 Score=32.45 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.....++....+.||.+...|+.+++.+.+.+.++..
T Consensus 201 ~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~ 237 (264)
T PF07246_consen 201 KILHEELEARESGLRNESKWLEHELSDAKEDMIRLRN 237 (264)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445555666777777777777777766666653
No 333
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.22 E-value=54 Score=36.58 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
|-+|..++..+..|+..|...|........++..|-++|..+.+++-+-+..+|+.++-++.
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444555555566666666666666667777777777777777777777778888777643
No 334
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=60.10 E-value=99 Score=28.75 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+++....+..|...-.....+-..+...+..|..|...|..-.++++.+|+.-
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444445555555555555555555566666666666666666666666653
No 335
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.96 E-value=1.2e+02 Score=28.77 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 013166 274 LLKGLTDVNQKY 285 (448)
Q Consensus 274 L~~ql~~l~q~~ 285 (448)
|+..+..+..++
T Consensus 117 l~~~l~~l~~kl 128 (221)
T PF04012_consen 117 LKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 336
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=59.81 E-value=69 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 013166 300 ETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 300 ~~Lr~kLk~aE~~v~Rl~ 317 (448)
..|+++|..++....||.
T Consensus 609 ~~l~~~~~~~ekr~~RLk 626 (722)
T PF05557_consen 609 AELKAELASAEKRNQRLK 626 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555665555553
No 337
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.75 E-value=1.6e+02 Score=33.69 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
.....++-+|+...++|..+++.++.+..++..+=-.-+.++..|.-.+..++...+.+...|
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n 151 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETN 151 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344556677777777777777777777776665444445556666666666665555555544
No 338
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=59.74 E-value=1e+02 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.+..+.-.|.+++..|+.++..++..|..|+..+
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666788888888888888888888877654
No 339
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.61 E-value=1.2e+02 Score=34.84 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.|+.+-..|...-..|.++|..+...-..|..+++.+
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444334443333333
No 340
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=59.51 E-value=40 Score=29.63 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+++++..++.+|+.|..++..++
T Consensus 20 lRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 20 LRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456667777766666653
No 341
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=59.39 E-value=1.4e+02 Score=33.44 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.++++.++..|+.|..-...+..++.....+...+..+=..|+.+.+.++.|.+++..-.+|
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777777777777777777777777777766665444333
No 342
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.26 E-value=1.3e+02 Score=33.84 Aligned_cols=22 Identities=18% Similarity=-0.082 Sum_probs=12.8
Q ss_pred CCChHHHHHHHHhhhhhhhHHH
Q 013166 108 PVDSDEYRAYLKTKLDLACAAV 129 (448)
Q Consensus 108 ~~dp~~y~a~LK~kLd~~cAAv 129 (448)
+-|=-..=-||=.+||-.|---
T Consensus 102 ~KdF~~iFkfLY~~Ldp~y~f~ 123 (581)
T KOG0995|consen 102 VKDFIAIFKFLYGFLDPDYEFP 123 (581)
T ss_pred cccHHHHHHHHHhccCCCcccc
Confidence 3354444556667777776543
No 343
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.20 E-value=1.3e+02 Score=36.57 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
++-..|..|.+++....++.+.+..+|...+.++..+++.+.-.++++.-+.+
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456889999999999999999999999999999999988888888876653
No 344
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.09 E-value=3.1 Score=46.72 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE---SAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~---L~~EN~~Lkaql~~Lr~kLk 307 (448)
..=++|.+.+.+|..+|..|+..|..|..+...|.+++.. +..+...++.++..|..++.
T Consensus 318 e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~ 380 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLS 380 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888999999999999999888887777765543 33344444455555444433
No 345
>PRK02224 chromosome segregation protein; Provisional
Probab=59.03 E-value=1.7e+02 Score=33.42 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 299 IETLRAKVKMAEETVKR 315 (448)
Q Consensus 299 l~~Lr~kLk~aE~~v~R 315 (448)
+..|+.++..++....+
T Consensus 574 ~~~~~~~~~~l~~~~~~ 590 (880)
T PRK02224 574 VAELNSKLAELKERIES 590 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344333333333
No 346
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.99 E-value=1.4e+02 Score=36.11 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+....+.|.-++.+|+.|...+..++..+..++..+..++..|++.+......+..++.
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34456778888888888888888888888888888888888888777766555554443
No 347
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=58.97 E-value=1.3e+02 Score=30.77 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
..++.|+.++..++.+......++...+.++
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555555555555554443
No 348
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=58.90 E-value=52 Score=33.92 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
-+|.+|+.++..-+..+.+|+.....|...+.+|..+=.....-|--|+.+|+.-++.|.||..-+
T Consensus 236 Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 236 GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888877777777777677777778888888888888886443
No 349
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.71 E-value=58 Score=27.98 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+..++..|..++..+..+|..|..++..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35567777888888899999999988888764
No 350
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=58.61 E-value=73 Score=33.88 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSL------------LKGLTDVNQKYD-ESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L------------~~ql~~l~q~~~-~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
...+..|+.++..++.+...| ..++..+.+++. .+..+=..+++++..+++++..+++..++.
T Consensus 242 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 242 QQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555555555443 445555554444 455555666667777777776666665544
No 351
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.37 E-value=1.6e+02 Score=27.39 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKM 308 (448)
Q Consensus 295 Lkaql~~Lr~kLk~ 308 (448)
|+..+..|++++..
T Consensus 157 l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 157 LRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 352
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=58.25 E-value=11 Score=28.54 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=10.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 235 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 235 R~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
|.++...||+=|+..-... ..+.+||.++..|..||-.|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3456667777776665555 446777777777777777776654
No 353
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=58.22 E-value=35 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.....+..++.+++.++.||..|+.++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455667777777777777777777666443
No 354
>PRK14127 cell division protein GpsB; Provisional
Probab=58.16 E-value=58 Score=29.13 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
+|+++......|..||..|..++.
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~ 54 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENA 54 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 355
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.83 E-value=1.3e+02 Score=32.69 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
..+..-...+..++..+..+...+..+=+.|+.++..|+++|..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555555555555555555555444
No 356
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.57 E-value=41 Score=35.67 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 290 VNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 290 ~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.+|..|+.+...|++++..++++++++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 36 IQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333333333444444444444455543
No 357
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=57.52 E-value=1.2e+02 Score=28.05 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 013166 241 SNRESARRSRRRKQAHLNELE--TQAGQLRAEHSSLLKGLTD---------------------VNQKYDESAVNNRILKA 297 (448)
Q Consensus 241 sNRESARRSR~RKq~~LeeLE--~qV~~Le~ENs~L~~ql~~---------------------l~q~~~~L~~EN~~Lka 297 (448)
++...--..+.+++..+.+-- ..-.+|+.||..|..+|.. +.++.+.+..++..|+.
T Consensus 19 k~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~ 98 (177)
T PF13870_consen 19 KHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQ 98 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443322 2234666677776666544 33455666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 298 DIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 298 ql~~Lr~kLk~aE~~v~Rl 316 (448)
++......+..+++.+.++
T Consensus 99 ~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 99 ELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666655555444443
No 358
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.41 E-value=1e+02 Score=24.81 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql 278 (448)
++.|..+|+.|..+...|...+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv 26 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDV 26 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333
No 359
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=57.30 E-value=1.1e+02 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
-+++++..++.++.+-..+..+...+.++.+.+..+
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~d 62 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLED 62 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666555555554443
No 360
>PF14645 Chibby: Chibby family
Probab=57.27 E-value=37 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
.+..+|+.||.-|+-+++.|-..+.+..+|-..+.
T Consensus 78 ~~n~~L~EENN~Lklk~elLlDMLtettae~~l~e 112 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELLLDMLTETTAEAHLLE 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665555444444444333
No 361
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=57.03 E-value=1.4e+02 Score=36.69 Aligned_cols=63 Identities=24% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLL--------KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~--------~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
.+.....+|+..+..|+.+-..|. .++....++......+.+.|.+++..|+..++.+++..+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~ 532 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND 532 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566655555555555555 233333334444455555555555555555555543333
No 362
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=57.02 E-value=68 Score=38.45 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
.+.+++++|+..+..|+.||..|..+|..|..
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888888887765
No 363
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.80 E-value=1.9e+02 Score=28.26 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
|+.||.++...+......-.++..+.+++..+..+-.....++..+..++..+++.++.
T Consensus 94 i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 94 IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444433
No 364
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=56.58 E-value=2.2e+02 Score=28.51 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
...+..+..++..|+.|+..+..++..+.+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555544
No 365
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=56.42 E-value=55 Score=27.75 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+|..++..-+.|...|..-++.++.++.....-|..|..+...++
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444555554444443
No 366
>PF14282 FlxA: FlxA-like protein
Probab=56.38 E-value=52 Score=28.73 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLK 276 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ 276 (448)
.++.|+.++..|+.+...|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 344445555555444444433
No 367
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.98 E-value=1.2e+02 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 293 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~ 293 (448)
|+-|-...+.+|..|+.+|..|..++..|+.++.....|-.
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667777777776666666665555444444433
No 368
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.94 E-value=1.9e+02 Score=33.51 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.-++.+...+..+...-..|..+++....++..+...=+.++.+++.++.+.+-+|+...+|.
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555555555556666666666666666655553
No 369
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.85 E-value=50 Score=33.44 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 013166 290 VNNRILKADIETLR 303 (448)
Q Consensus 290 ~EN~~Lkaql~~Lr 303 (448)
..++.|..+++.|+
T Consensus 89 t~~~~ie~~l~~l~ 102 (247)
T COG3879 89 TDDAALEDRLEKLR 102 (247)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444555553
No 370
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=55.82 E-value=42 Score=35.33 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 283 QKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+.|..+..||..||+++..|++++...+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888877766654
No 371
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.63 E-value=2e+02 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
++.|..++..++.+...|..++..
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 372
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=55.59 E-value=1.2e+02 Score=25.33 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA-----VNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~-----~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.|..=+..|+.|-..|+.++..|+.+|+.+. ..-+.|..++..|-.++..--++|.+|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556566666655555543 344455555555544444444444433
No 373
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.56 E-value=75 Score=28.00 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 288 SAVNNRILKADIETL 302 (448)
Q Consensus 288 L~~EN~~Lkaql~~L 302 (448)
+..++..|+..+.++
T Consensus 92 ~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 92 LQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 374
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=55.50 E-value=1.9e+02 Score=27.36 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
.+|..++...-+.|.+.+..=.+.+.+.+.++...+.|-..+..+.
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777778888888888888888888888888877776654
No 375
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.42 E-value=97 Score=34.51 Aligned_cols=54 Identities=7% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+++|-.++......+..+..+...|..++...+.+...|..++..+..++.+++
T Consensus 422 I~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 422 IEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333333333333333333333344444444443333
No 376
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=55.31 E-value=1.3e+02 Score=35.02 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 288 SAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 288 L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+..+...|-+++..||.+|..+|....|
T Consensus 578 ar~~~~~lvqqv~dLR~~L~~~Eq~aar 605 (961)
T KOG4673|consen 578 ARERESMLVQQVEDLRQTLSKKEQQAAR 605 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677777776666544433
No 377
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=55.11 E-value=2e+02 Score=27.65 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 245 SARRSRRRKQAHLNELE-------TQAGQLRAEHSSLLKGLTDVNQKYDESA--VNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 245 SARRSR~RKq~~LeeLE-------~qV~~Le~ENs~L~~ql~~l~q~~~~L~--~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+.+...+-+.++.-|+ ..++.|+.++..+..++.++.+.|..-. +.-..|...+.++..+++.+...+.-
T Consensus 24 ~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~e 103 (165)
T PF09602_consen 24 FASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQE 103 (165)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444 4567777777777777777666644332 34445666666777776666554433
Q ss_pred H
Q 013166 316 V 316 (448)
Q Consensus 316 l 316 (448)
+
T Consensus 104 l 104 (165)
T PF09602_consen 104 L 104 (165)
T ss_pred H
Confidence 3
No 378
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.05 E-value=2e+02 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHhhhhhhhHHHHh
Q 013166 105 STAPVDSDEYRAYLKTKLDLACAAVAL 131 (448)
Q Consensus 105 ~~~~~dp~~y~a~LK~kLd~~cAAvA~ 131 (448)
.++.++-+-| +|..=.|+||-++-.
T Consensus 95 k~G~Ge~vc~--VLd~Lad~AL~~~~F 119 (359)
T PF10498_consen 95 KQGSGEHVCY--VLDQLADEALKRKNF 119 (359)
T ss_pred hCCCCHHHHH--HHHHHHHHHHHhcCc
Confidence 4466665554 677667777776533
No 379
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=55.03 E-value=86 Score=31.78 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
+..|..++-+=++++++.+..+..++..+
T Consensus 140 ~~~L~~~g~vS~~~~~~a~~~~~~a~~~l 168 (346)
T PRK10476 140 LEPLLAKGYVSAQQVDQARTAQRDAEVSL 168 (346)
T ss_pred HHHHHHCCCcCHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544333
No 380
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=54.88 E-value=81 Score=30.97 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 289 AVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 289 ~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+.+=..++.+++.|+.+++.+++.|+-
T Consensus 168 e~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 333344667777777777777766544
No 381
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=54.79 E-value=36 Score=34.55 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQ---KYDESAVNNRILK 296 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lk 296 (448)
+..||+.|++++..+.+ +...++.||..||
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr 103 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLK 103 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433332 2334445555444
No 382
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=54.71 E-value=67 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 230 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQL 267 (448)
Q Consensus 230 ~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~L 267 (448)
+...+|.-|.++||+-.++-+.++.++...+..++.+|
T Consensus 272 ~~~~kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 272 PKKNKKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666788888877777777777655555554443
No 383
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=54.60 E-value=83 Score=29.97 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~-~EN~~Lkaql~~Lr~kLk~a 309 (448)
..++.|+..++.|....+.+...+.-+..++.+.. .+=..|..++.+|+.-+.|+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv 134 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777787777777777777776665554322 23444555555554444443
No 384
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=54.29 E-value=1.7e+02 Score=34.16 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+-+..-|+.|+..|.+.+..-.++......||..++.+++.|..+...++..+.++.
T Consensus 703 ~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 703 PIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888888888888888888888888888777776666654
No 385
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.95 E-value=81 Score=36.65 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLK---------------------GLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~---------------------ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
..+|.++..++..+..||..|.. ++..|..++..++-||..||-++.-|...|..
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887776 44567778888888888888888888777654
No 386
>PF13166 AAA_13: AAA domain
Probab=53.66 E-value=2.1e+02 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+..+...+..+..+...+..++..+..+...+..+-..++.++.+|++++...+..++++
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~i 464 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRI 464 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444555555566666666666666666677777777777777766554444443
No 387
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.51 E-value=1.5e+02 Score=28.23 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+.+..+...=..|+..+..|+.++..
T Consensus 104 ~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444443333
No 388
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.02 E-value=80 Score=27.19 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.+..++.+|..-...|.++...|..++..|...|+..|.++.+.
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444555556777787777666543
No 389
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.76 E-value=69 Score=35.09 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
+-+.+.++.||..||..+..|+.....
T Consensus 303 qmr~qqleeentelRs~~arlksl~dk 329 (502)
T KOG0982|consen 303 QMRDQQLEEENTELRSLIARLKSLADK 329 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777777777666655433
No 390
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.66 E-value=84 Score=35.40 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
.|+..++.+...+......|..++.....++..+..+|..||.
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555543
No 391
>PRK01156 chromosome segregation protein; Provisional
Probab=52.59 E-value=2.5e+02 Score=32.36 Aligned_cols=16 Identities=19% Similarity=0.354 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKMAE 310 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE 310 (448)
|..++.+|+.++..++
T Consensus 254 ~e~~i~ele~~l~el~ 269 (895)
T PRK01156 254 YESEIKTAESDLSMEL 269 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 392
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=52.49 E-value=86 Score=31.33 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 266 QLRAEHSSLLKGLTDV-NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l-~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
+++..-..++.++..+ ..++..+..||..|+-+++.|+.+| .+++++.+.-+.|
T Consensus 98 QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~l---r~ei~~~~a~~rL 152 (220)
T KOG3156|consen 98 QQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSL---RHEISKTTAEFRL 152 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchhcee
Confidence 3334444555555444 3578889999999999999998775 4456666655443
No 393
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.44 E-value=2.1e+02 Score=29.86 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 239 MLSNRESARRSRRRKQ-AHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 239 mlsNRESARRSR~RKq-~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
-+.+..++-++.++.. +.+.+|-.++..|+.+-..|..++..+..
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433321 23333333333333333333333333333
No 394
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=52.35 E-value=1.1e+02 Score=24.79 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+.+....++..+..+..++..+..+|...++..+-+-
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666777777766666655543
No 395
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.29 E-value=42 Score=36.81 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 279 TDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.-|+.++..-..||..|+.++++|...
T Consensus 275 d~LE~rv~~~taeNqeL~kkV~~Le~~ 301 (472)
T KOG0709|consen 275 DGLESRVSAFTAENQELQKKVEELELS 301 (472)
T ss_pred HHHhhhhhhcccCcHHHHHHHHHHhhc
Confidence 445556666777777777777776553
No 396
>PF14282 FlxA: FlxA-like protein
Probab=52.18 E-value=1.1e+02 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRA 269 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ 269 (448)
.+..|..++..|..
T Consensus 27 Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 27 QIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHc
Confidence 34555555555555
No 397
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.13 E-value=2.4e+02 Score=34.68 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (448)
Q Consensus 243 RESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~ 287 (448)
...|++....-++++++++..+...+.+...+..++..+..++..
T Consensus 870 L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~ 914 (1353)
T TIGR02680 870 LRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT 914 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666665555555555555555444443
No 398
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.02 E-value=16 Score=31.97 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 256 HLNELETQAGQLRAEH-SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 256 ~LeeLE~qV~~Le~EN-s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
....++.++..|...- .+-.+-+...+.....+...|..|+.++.+.+..|..++..++.|..
T Consensus 16 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 16 EKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554332 22333445566677788888999999998888888888777666653
No 399
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=51.94 E-value=1.8e+02 Score=34.50 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=10.8
Q ss_pred CCCcchhHHHHHHhhhhcC
Q 013166 31 NRSQSEWELEKFLQEVTVS 49 (448)
Q Consensus 31 nrs~SEW~FerfLeE~~~~ 49 (448)
++|..=-||-+|++=.-+.
T Consensus 240 ~~~S~lqYfk~LI~IP~LP 258 (980)
T KOG0980|consen 240 ADCSNLQYFKRLIQIPTLP 258 (980)
T ss_pred HhcchhHHHHHHhcCCCCC
Confidence 4455566666666554443
No 400
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=51.89 E-value=74 Score=27.48 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
...|..||+.|..+... .+.+.+|...|++.++
T Consensus 32 ~~kL~~en~qlk~Ek~~-----~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAV-----AETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHH
Confidence 44444444444444332 2344566666665555
No 401
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.64 E-value=2e+02 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.++.++.++..=..|...|..++..+..+.......-.+|+..+.....+..++...|++|+
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555553
No 402
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=51.48 E-value=1.2e+02 Score=35.60 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSS---------------LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~---------------L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+.-.+++|||+++.-|+.|..+ .-.++.+++.++..++.|=++|.+.-++|++....+.+.
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~ 128 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLEL 128 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445667777777766666555 134455555555555555555555555555554444433
No 403
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.40 E-value=1.2e+02 Score=33.85 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVN---Q----KYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~---q----~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+.++.||.++..|+.+-..|..++.+-. . ++..+..+=..++.++++|..+-..+++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888887777777764321 1 3444445555566666666555544444
No 404
>PRK10698 phage shock protein PspA; Provisional
Probab=51.25 E-value=1.9e+02 Score=28.41 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+..|+.+.......+..|..++..|...=..+|.+-..|-++.+.|
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333333
No 405
>PRK10722 hypothetical protein; Provisional
Probab=51.05 E-value=2.1e+02 Score=29.18 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 286 DESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 286 ~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
..+..+++.|+.++..+.+||..+.++
T Consensus 179 D~lrqq~~~Lq~~L~~t~rKLEnLTdI 205 (247)
T PRK10722 179 DALRQQQQRLQYQLELTTRKLENLTDI 205 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555554444433
No 406
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=51.04 E-value=1.6e+02 Score=27.98 Aligned_cols=38 Identities=5% Similarity=0.176 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 279 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.+..++..++.+...|++.+...+.+|......|.|+
T Consensus 82 ~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 82 DVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555444444444444433
No 407
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=51.03 E-value=1.6e+02 Score=28.33 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.++..++++...|..+|+.|+.+...+......+-.+++|-+.+
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~ 154 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRM 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555555555555566656555555555555555555555544
No 408
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.96 E-value=2.1e+02 Score=34.60 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
++..+.+++..+..+-..|-.|-..|+..++.++.-|..++..+.+
T Consensus 454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444555555555555555444433
No 409
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.45 E-value=2.9e+02 Score=31.00 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=2.5
Q ss_pred HHHHhh
Q 013166 40 EKFLQE 45 (448)
Q Consensus 40 erfLeE 45 (448)
+.||++
T Consensus 136 ~~~i~~ 141 (650)
T TIGR03185 136 DEFINE 141 (650)
T ss_pred HHHHHH
Confidence 344443
No 410
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.38 E-value=3.2e+02 Score=30.23 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
.++.++..++.++..+..++..++.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~ 88 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTT 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 411
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.37 E-value=82 Score=35.04 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL----KADIETLRAKVKM 308 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~L----kaql~~Lr~kLk~ 308 (448)
++++++++.-+..|..++..|..+|..+..+|..+..+|..+ +++++.|..+|..
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888899999999999999998888877666554 6777888777554
No 412
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.28 E-value=2.4e+02 Score=35.27 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
-..-...+++.+.++..++.+...+..++..+.+++..+..+-..+...+..++.++...+..+.++.+...+
T Consensus 357 LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666666666666666677777777766666666666555443
No 413
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.18 E-value=84 Score=32.49 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 262 TQAGQLRAEHSSLLKGLT-----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~-----~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.++..|..||++|-.+.. .|.-++.--...|.+||..-++|...+..+.+.|.+..
T Consensus 217 AKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmq 277 (330)
T KOG2991|consen 217 AKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQ 277 (330)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcch
Confidence 344466667766655432 33333333345677777777777777666666655543
No 414
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=50.15 E-value=36 Score=30.49 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.++..++++...|+.||+-||-+++-| |.|+.+.+.+
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievL---LDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVL---LDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcC
No 415
>PHA03011 hypothetical protein; Provisional
Probab=49.85 E-value=1.2e+02 Score=27.31 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.+++|..|-..|-.|.+-+..++.++.+-.+.-..+=.-|++++..|
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkL 111 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKL 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333344444443
No 416
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.64 E-value=1.6e+02 Score=30.75 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
++++..|=+.||+=|+++|..|...
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchh
Confidence 3445556667777777777666554
No 417
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.62 E-value=1.1e+02 Score=36.31 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
++.++..|+.++..|+.|-+.|...+..++.+..+.+.|=..+++++.+|...|..-.+.+.+
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~ 166 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFM 166 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHH
Confidence 344556666666666666666666666666666655555555555555555444443333333
No 418
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=49.53 E-value=2.3e+02 Score=26.69 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQ-------AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK- 305 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~q-------V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k- 305 (448)
+++.+++.+-+.|...-.||++.++.|... +..++.+...+..++..++.+|..+ +..++.++......
T Consensus 128 ~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~i---s~~~k~E~~rf~~~k 204 (236)
T PF09325_consen 128 NRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEI---SENIKKELERFEKEK 204 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 013166 306 VKMAEETVKRV 316 (448)
Q Consensus 306 Lk~aE~~v~Rl 316 (448)
......++...
T Consensus 205 ~~d~k~~l~~~ 215 (236)
T PF09325_consen 205 VKDFKSMLEEY 215 (236)
T ss_pred HHHHHHHHHHH
No 419
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.53 E-value=3.2e+02 Score=28.56 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+|..++..+..+-..|..++..+.++...+..+-..|-.++.+|+.+...
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665555555555555555555555554433
No 420
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=49.47 E-value=3.4e+02 Score=31.04 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+|+.+|..|+.++..|.++|..+..+....+.+=..-..++..++.|--+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~L 132 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLL 132 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888877777776666555555555566666655333
No 421
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.18 E-value=66 Score=34.14 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~q 277 (448)
+.++..|+.++..|..+
T Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEE 44 (398)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 422
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=49.11 E-value=2.7e+02 Score=27.39 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
...-++..+..-+.+-..|...+...+++-..+...-...+.++..|+.+...+
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555666666555555555555555555555555444333
No 423
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=48.91 E-value=1.4e+02 Score=26.83 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013166 262 TQAGQLRAEH 271 (448)
Q Consensus 262 ~qV~~Le~EN 271 (448)
.++..++.+.
T Consensus 55 ~~l~~~r~~l 64 (150)
T PF07200_consen 55 PELEELRSQL 64 (150)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 424
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=48.87 E-value=1.8e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 238 RmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~q 277 (448)
-+|-|.|.||--+.|..+ +.++.++..+..-...+..+
T Consensus 37 q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~ 74 (126)
T PF09403_consen 37 QQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEK 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHH
Confidence 455566666655554444 34444444444433333333
No 425
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.82 E-value=1.1e+02 Score=33.94 Aligned_cols=51 Identities=16% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQA-------GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 254 q~~LeeLE~qV-------~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
+..+++|-... ..++.-++.|.+-+...+.++.+-..|+..|.-++..+.+
T Consensus 368 k~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 368 KENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45566665332 2334444555555666666666666666666555554433
No 426
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.73 E-value=1.4e+02 Score=30.67 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+.-.+.+.|.. |+.-...+..++..+++++..+..+...|.++|+..+..|..++ +||..|-
T Consensus 156 r~~e~~~iE~~---l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~q---KRL~sLq 217 (267)
T PF10234_consen 156 RPLELNEIEKA---LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQ---KRLQSLQ 217 (267)
T ss_pred CCcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33444444443 33445566777777777788888888888777766655544443 5555543
No 427
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.71 E-value=1e+02 Score=34.35 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--
Q 013166 243 RESARRSRRRKQAHLNELETQAGQLRAE-------HSSLLKGLTDVNQKYDE----SAVNNRILKADIETLRAKVKMA-- 309 (448)
Q Consensus 243 RESARRSR~RKq~~LeeLE~qV~~Le~E-------Ns~L~~ql~~l~q~~~~----L~~EN~~Lkaql~~Lr~kLk~a-- 309 (448)
+-.++....-+++.+++++.+|+.|+.. ..+..+++..+..+... +..-.+.|....+.+++.+..+
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3344444444566888888888888875 12344445444444333 3333444444444454444443
Q ss_pred --HHHHHHHh
Q 013166 310 --EETVKRVT 317 (448)
Q Consensus 310 --E~~v~Rl~ 317 (448)
++-.+||.
T Consensus 259 ap~~D~~~L~ 268 (555)
T TIGR03545 259 APQNDLKRLE 268 (555)
T ss_pred ccHhHHHHHH
Confidence 34456665
No 428
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.54 E-value=1.5e+02 Score=30.33 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
++-|++|......|...|..|.+.|.+..
T Consensus 5 r~sl~el~~h~~~L~~~N~~L~~~IqdtE 33 (258)
T PF15397_consen 5 RTSLQELKKHEDFLTKLNKELIKEIQDTE 33 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 35567777777777777777776665543
No 429
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.49 E-value=2.8e+02 Score=27.36 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+..|+.++..|..+-..|..+......+...+...=..+..+...|...+
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554444444444444444333
No 430
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=48.46 E-value=1.9e+02 Score=28.87 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----NNRILKADIETLRAK 305 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-----EN~~Lkaql~~Lr~k 305 (448)
.+..|.+.+.+.---.+.--...+..+..++.++..++.+.. .++..++..+..+.. +....++++..++++
T Consensus 118 ~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (327)
T TIGR02971 118 REVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEA 194 (327)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcchhhhhccCCCCCCCCCCC
Q 013166 306 VKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN 338 (448)
Q Consensus 306 Lk~aE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~ 338 (448)
+..++...++.. +-.||.|
T Consensus 195 l~~a~~~l~~~~--------------i~AP~dG 213 (327)
T TIGR02971 195 VQQAEALLELTY--------------VKAPIDG 213 (327)
T ss_pred HHHHHHHHhcCE--------------EECCCCe
No 431
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=48.21 E-value=49 Score=30.78 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLR-AEHSSLLKGLTDV 281 (448)
Q Consensus 257 LeeLE~qV~~Le-~ENs~L~~ql~~l 281 (448)
++.|+.+++.|+ .+...+.+++...
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~A 35 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWA 35 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445566666664 3455555555444
No 432
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=47.90 E-value=2.2e+02 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
|..-+.+|+.++.++..|.+.|.-+...+...
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e 49 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666555544433
No 433
>PRK11281 hypothetical protein; Provisional
Probab=47.63 E-value=3e+02 Score=33.58 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
+..+-..|..|.+++....++.+.+..+|...|.+++.+++...-.++++.-+.+
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567999999999999999999999999999999999988888888776654
No 434
>PLN02320 seryl-tRNA synthetase
Probab=47.60 E-value=1e+02 Score=34.20 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ--KYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q--~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..|..+++.|+.|-..+.+++..... ....+..+=+.|+.++.+|..+++.+++.+..+
T Consensus 103 r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 103 LALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566667777777777776654211 345677777888999999998888888776664
No 435
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.27 E-value=2.6e+02 Score=27.52 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
+-.+...++.+...|..++..+.+....++.
T Consensus 66 ~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 66 LLQQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666777777777666665554
No 436
>KOG2260 consensus Cell division cycle 37 protein, CDC37 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.81 E-value=1.4e+02 Score=31.90 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVN--------QKYDESAV------NNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~--------q~~~~L~~------EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..+++.+++|..++..-+.-+..+.+.+..|. .+....++ +|..++..+++|..++++....++
T Consensus 43 ~~~~q~~eei~k~~~~~~~ll~e~~e~l~~l~~~~~s~~~~E~~k~e~~~~ei~~~e~~~~~~eeL~k~ek~~~w~td 120 (372)
T KOG2260|consen 43 AERKQEQEEIKKSKDMYSRLLEEVQEILSNLEVSSLSGLKKELEKFETVDSEIREGEAWEDKLEELEKKEKKEPWLTD 120 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHhcccccccccchHHHHHHHHHHHHHhhCcccch
Confidence 44556677888777777666666666665443 23333444 678888888888888777654444
No 437
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.76 E-value=1.8e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.....|-..|+.-+..||.||.--.+..++|
T Consensus 14 L~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkL 45 (76)
T PF11544_consen 14 LNDKQEEIDRLNILVGSLRGKLIKYTELNKKL 45 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444444443
No 438
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.61 E-value=22 Score=40.20 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 284 KYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
++..|..+|..|..++..|+.++..++..+.+
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555544444
No 439
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=46.58 E-value=1.3e+02 Score=34.31 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=7.2
Q ss_pred cchhHHHHHHhh
Q 013166 34 QSEWELEKFLQE 45 (448)
Q Consensus 34 ~SEW~FerfLeE 45 (448)
..++.|..+|.-
T Consensus 15 ~~~idl~~l~~~ 26 (726)
T PRK09841 15 ENEIDLLRLVGE 26 (726)
T ss_pred CCCcCHHHHHHH
Confidence 456666666654
No 440
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=46.55 E-value=1.1e+02 Score=25.31 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRA-EHSSLLKGLTDVNQ--------KYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 257 LeeLE~qV~~Le~-ENs~L~~ql~~l~q--------~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
++.|+.+++.|+. +...+..++..... .|+.+..+-..|.++|..|..+|..
T Consensus 11 ~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 11 YEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555554 44555555555543 5666666666677777777665543
No 441
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.19 E-value=1.1e+02 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaq 298 (448)
.+..|+.++..|+.++..|..++..+..+|..+.++-.-+|.+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666667777776666666655544444433
No 442
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=46.18 E-value=1.5e+02 Score=31.47 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.++.+..++..|+.|--..+.+-...+..+..+..+|.+--.+++.|..++.++|.....|
T Consensus 251 E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRAL 311 (391)
T KOG1850|consen 251 EMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRAL 311 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666667777777888899988899999999999988776555
No 443
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=46.11 E-value=1.5e+02 Score=26.17 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|...+..|..++..+.++...+...+..+++++..|+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444555555555555555433
No 444
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=46.11 E-value=49 Score=32.38 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.+.+|......|.++|..|..+|..|..++.+|++.+..+....
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREM 149 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 34455566666777777888888888888888877766554443
No 445
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.10 E-value=1.8e+02 Score=31.04 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=5.9
Q ss_pred CCCCceeeec
Q 013166 81 GDDDVVEIKK 90 (448)
Q Consensus 81 ~~~~~vev~~ 90 (448)
+..++++|.-
T Consensus 119 ~~s~vi~Is~ 128 (498)
T TIGR03007 119 GRDNLFTISY 128 (498)
T ss_pred CCCCeEEEEe
Confidence 3346777764
No 446
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.01 E-value=4.4e+02 Score=28.94 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~q 277 (448)
.+|..++..|-.+...|..+
T Consensus 147 q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 147 QDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333333333
No 447
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.96 E-value=2.1e+02 Score=31.60 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..+.+..++..+.+++..+..+-..++..+..||..-..|++.+.++
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666555555444443
No 448
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=45.92 E-value=1.8e+02 Score=24.51 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK-VKM---AEETVKRVT 317 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k-Lk~---aE~~v~Rl~ 317 (448)
..|+.+..+...+..|...++.+-.++..++..-..|...+|..+-+|... .+| -|+.|.||+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr 70 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLR 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777777777777777787777777654 222 267777775
No 449
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=45.88 E-value=87 Score=34.52 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
.+|+.+.+.+...+..|+....++..++..++-++..|...=++||.++++
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 450
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=45.79 E-value=1.7e+02 Score=24.19 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDES---AVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L---~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+|..++..+..+...|.+.+...-.++..+ ...++..+.+.+.|....+.+-..+.+
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~ 89 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQK 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445544444444444444 444555566666665555544433333
No 451
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=45.48 E-value=92 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Q 013166 278 LTDVNQKYDESAVNNRILKADIETLRAKVKM-------AEETVKRVT 317 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~-------aE~~v~Rl~ 317 (448)
|..++.+.+.+.-||-.||.++..+|++|.- |...+.|+.
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~ 56 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLL 56 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 452
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=45.46 E-value=1.3e+02 Score=35.11 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.+|+.++..+..-|+.+..++......|..+...-..+.+++..|+.|+..+|..+..-+
T Consensus 634 ~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 634 EELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444455555556666666666667777777777777776655443
No 453
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.38 E-value=2e+02 Score=26.32 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
-...|..+|+.+-.++.+...-....+.++.+++..+......|+.
T Consensus 62 tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 62 TKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344555666666666555555555666666666555554444433
No 454
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.29 E-value=1.8e+02 Score=33.94 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+.|..|-..+++++..++..-..+..++..|++++..|++
T Consensus 218 kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 218 KNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677777777888887777777788888888888888875
No 455
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=45.08 E-value=65 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 278 LTDVNQKYDESAVNNRIL 295 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~L 295 (448)
+..|++++..+...|..|
T Consensus 110 i~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 110 IDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333344444433
No 456
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=44.91 E-value=47 Score=30.12 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L 274 (448)
|-.|..|+.++||.++ ++.+++|+.++..|+.+.+.+
T Consensus 95 E~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544432 245566666666666555544
No 457
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=44.66 E-value=89 Score=33.89 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+++.+|+.++..++.....+.. ...-..+..+=..|..++..|++++..++.+++++.
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred HHHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677776666655544432 112222334444455556666666666666666654
No 458
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.57 E-value=1.2e+02 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
|+++..++..|+..+.....++..+.+
T Consensus 53 l~~i~~~l~~L~~~~~~~~~rl~~~r~ 79 (141)
T PF13874_consen 53 LKEINDKLEELQKHDLETSARLEEARR 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 459
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=44.56 E-value=2.5e+02 Score=25.71 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcchhhhhccCCCCC
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK----MAEETVKRVTGLNPLLLARSDVPGV 332 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk----~aE~~v~Rl~~ln~~l~~~~~~~~~ 332 (448)
..|..+++..+.+-..|...+.+-+++|.....+=.. +.+|...|. .+++.+..+..+|.+|..-...+-+
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k----v~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLep~ 126 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK----VNELSQQLSRCQSLLNQTVPSIETLNEILPEEERLEPF 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCCCC
Confidence 3455555556666666666666655555544442222 333333322 2577788888899888766665544
No 460
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.52 E-value=2.9e+02 Score=34.02 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
--++.+.+-.+++..+.+|+..+..++.|-.+..+.+..+......+...=..|++++++++..+.+..
T Consensus 529 ~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~ 597 (1293)
T KOG0996|consen 529 KLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSR 597 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334566778888899999999999999999999999999888888888888888999999888666643
No 461
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=44.02 E-value=1.1e+02 Score=34.04 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
++.||.++..|+.+-..|..++..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~ 593 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVAD 593 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888887777753
No 462
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=43.96 E-value=93 Score=28.67 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
-+|..--++.+-+ +-|.....-+..|+.||.-|+..+..+++-|.+=...=..|+.++.
T Consensus 65 vEKTi~til~Lhe----------Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 65 VEKTIGTILNLHE----------KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred hhhHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3566655655432 3345556668889999999999998888877665444444444443
No 463
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.81 E-value=45 Score=36.44 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
+.|..+|..|..+|..|+.+++.+.-++..+..||+-|+.--.++++|..
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQarae 95 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAE 95 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccc
Confidence 56677778888888888888888888888888888877655555555433
No 464
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=43.79 E-value=1.2e+02 Score=27.07 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 013166 297 ADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 297 aql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
++...|..-++.+..+-+||..+
T Consensus 78 ~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 78 AQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556655555566666666543
No 465
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=43.62 E-value=37 Score=33.21 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+|+.+...|+.++..|......|..|+..|++++..+.....+.
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~ 152 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQKS 152 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhccC
Confidence 56666666666677777777777777777777777766665553
No 466
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=43.33 E-value=2.1e+02 Score=30.68 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV--NNRILKADIETL 302 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~--EN~~Lkaql~~L 302 (448)
+..++.++..++.+...|..++..|++++..+.. .|.=|-++++.|
T Consensus 94 ~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyL 141 (390)
T PRK10920 94 LKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADFL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 3444445556666666666666666666666542 244455555554
No 467
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=43.13 E-value=5e+02 Score=28.77 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
..++..|-...+.++..+++++..-...-..|...+.+-+.-+.|.|
T Consensus 280 ~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemde 326 (552)
T KOG2129|consen 280 LMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDE 326 (552)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444444444444444444333332222234444444444444444
No 468
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=43.10 E-value=3.4e+02 Score=29.83 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQ-----AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~q-----V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|-+-+..=+++++.||.+ ..+|..|-..|..+-..|.+++..++.++..|--++.+++.+
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666543 344555555555555555555556666666665555555554
No 469
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.06 E-value=1.4e+02 Score=30.05 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.-+|..++.++..+..++.+...|..++..++.+.... |+.||++++....
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~~ 209 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45555555555555555555566666676666665555 6678888877543
No 470
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=42.87 E-value=78 Score=28.75 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
.|-.+...++..++..+..|..++-.+-.+...+...+..|..+-+.|+.+|..++..+.
T Consensus 65 ~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 65 KHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc
Confidence 344555666777777777777776666666665555555566666666666555554443
No 471
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=42.75 E-value=1.2e+02 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN 292 (448)
|...|..|..|+..|..++...++.+..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888777666554
No 472
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.61 E-value=1.8e+02 Score=23.40 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETL 302 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~L 302 (448)
.|..+-..|+.++...
T Consensus 21 qLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 21 QLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 473
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=42.52 E-value=2.3e+02 Score=25.53 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
|=+-+++-+...++.++.....+..++..-..|..-=....+++..+..+|..|+.++.
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~ 59 (125)
T PF03245_consen 1 NAQQYKRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLA 59 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 474
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=42.29 E-value=1.5e+02 Score=37.72 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 247 RRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|..+.+.-..+.+|..++..|+.+...|...+..+..++....+++..|+.++....++.+.+....+++
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~ 1304 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDS 1304 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 475
>PRK01156 chromosome segregation protein; Provisional
Probab=42.27 E-value=4.8e+02 Score=30.12 Aligned_cols=87 Identities=10% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRA----------EHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~----------ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
.+..+.++..++-+..+.--......+.+|..++..+.. +-..+..++..+..++..+..+-..|+.++.
T Consensus 626 ~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~ 705 (895)
T PRK01156 626 NEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013166 301 TLRAKVKMAEETVKRVT 317 (448)
Q Consensus 301 ~Lr~kLk~aE~~v~Rl~ 317 (448)
.|+.++..+++.+..+.
T Consensus 706 ~l~~~~~~l~eel~~~~ 722 (895)
T PRK01156 706 ILRTRINELSDRINDIN 722 (895)
T ss_pred HHHhhHHHHHHHHHHHH
No 476
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.18 E-value=56 Score=29.28 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
.++..|..+..+|+.||.-|+-+++.|...+.+..+|
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtettae 108 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTAE 108 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 477
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=42.14 E-value=1.4e+02 Score=35.11 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELET-QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~-qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+....=++..=.+++.....++........ -+.+-...|.+|.+++....++.+.+..+|..|+.....|++-.+-+++
T Consensus 28 ~~~l~~lq~~~~~~~~~~~~~a~~~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~e 107 (835)
T COG3264 28 EAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIRE 107 (835)
T ss_pred HHHHHHHHHHhhhhcccccccchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhc----chhhhhccCCCCCCCC
Q 013166 312 TVKRVTGL----NPLLLARSDVPGVGMP 335 (448)
Q Consensus 312 ~v~Rl~~l----n~~l~~~~~~~~~~~p 335 (448)
...-+.+. +.+++.....|..+.|
T Consensus 108 q~~~lr~sL~l~~~~~~q~~~lP~~~~~ 135 (835)
T COG3264 108 QIAVLRGSLLLSRILLQQLGPLPEAGQP 135 (835)
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCCCCc
No 478
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.07 E-value=92 Score=32.60 Aligned_cols=47 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+..|+.++..|+.++..|..++..+..+...+..+-..|+.++..|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.01 E-value=1.6e+02 Score=30.59 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+.....|-...+.|+.-+..|...+..-..++..++......|.+++.|...|+.......|
T Consensus 66 kREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 66 KRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=41.85 E-value=1.1e+02 Score=34.55 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
..++++...+|+.|+..-.....+|..+......++.+|+-|..+....+.-++.++..+..|.
T Consensus 36 ~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 36 MEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
No 481
>PRK11519 tyrosine kinase; Provisional
Probab=41.59 E-value=2e+02 Score=32.74 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE--SAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~--L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.++.-.+.+..-++-++.|+.|+..|+.+......++...+++... +..|.+.+..++.+|++++..++.....+..
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.58 E-value=2.3e+02 Score=27.55 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcc
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN----------RILKADIETLRAKVKMAEETVKRVTGLNPLLLARS 327 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN----------~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~ 327 (448)
.+++.++..++.+...+..++..++.++..+..-. ..++.++..++.+++.++..++.+......+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~A 139 (322)
T TIGR01730 60 DDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRA 139 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEEC
Q ss_pred CCCC
Q 013166 328 DVPG 331 (448)
Q Consensus 328 ~~~~ 331 (448)
.+.|
T Consensus 140 P~~G 143 (322)
T TIGR01730 140 PFDG 143 (322)
T ss_pred CCCc
No 483
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.53 E-value=2.3e+02 Score=24.34 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
...++.-.....-|+.-|.....+...+.+....+...-..|+++..+|+..++...++-+.++.|
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTEL 78 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.51 E-value=1.9e+02 Score=31.94 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
..|++-|...+.+....-..++..+..+.++..++..+=..|+-++..|.++.+.+...+..
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.18 E-value=2.4e+02 Score=32.76 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 247 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 247 RRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.|.+......-.+++.-+..|+.+...+..+...+.+...+++...+.|+.+.++|+.+-....+...+
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ 568 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.15 E-value=2.6e+02 Score=27.08 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
......+.++..|+.+...+...+..|..++..|..+=..+++.-..|-++++.++....
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.10 E-value=94 Score=32.53 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
....|+.++..|..++..+..+...+..+...++.++..|+.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.02 E-value=1.7e+02 Score=22.77 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN----NRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E----N~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
..+..+..+...++.+......++..+......|... ...++..+..|..+...+.+.+..
T Consensus 34 ~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 98 (105)
T PF00435_consen 34 EELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEE 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.99 E-value=1.4e+02 Score=28.06 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 243 RESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
..-.+.-+.+=+....+|..++-.-+.|...|...-.-=.+++..|..|...|+.++.++|.++.
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=40.92 E-value=4.9e+02 Score=30.40 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHhhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 228 LDSVDDKRARRMLSNRESAR-------------RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI 294 (448)
Q Consensus 228 ~d~~d~KR~RRmlsNRESAR-------------RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~ 294 (448)
.|..-+=++=|-++||..|. ++|.+-...+..|.....+|+.+...-...+..+..++..+...=.+
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe 553 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE 553 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~~v~R 315 (448)
...+...||+.|.-..+...+
T Consensus 554 s~eea~~lR~EL~~QQ~~y~~ 574 (739)
T PF07111_consen 554 STEEAAELRRELTQQQEVYER 574 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 491
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.92 E-value=22 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
++...-+..|..+...|..++..|.++...|..+...++.....|+..|..++...+.+.
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHH
No 492
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.91 E-value=62 Score=33.16 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 278 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+..+..++..|..||..|++++++|++++..+++-+..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~ 72 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAV 72 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>COG5570 Uncharacterized small protein [Function unknown]
Probab=40.85 E-value=45 Score=26.65 Aligned_cols=50 Identities=30% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
||.+|+.+-..|+.|.+.-...-..=-..+..|....-+||.+++.|+++
T Consensus 6 hl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 494
>PRK14143 heat shock protein GrpE; Provisional
Probab=40.80 E-value=1.7e+02 Score=29.32 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhcchhhhhc
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM------AEETVKRVTGLNPLLLAR 326 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~------aE~~v~Rl~~ln~~l~~~ 326 (448)
+++.++..|+.+...|.+++..+..+|..+.++-.-+|.++..=+..++. +.+++.-+..|.+.|...
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~ 137 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQL 137 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
No 495
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.75 E-value=1.8e+02 Score=28.85 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+..+..|+.++..|..++..+.+++..+...-..++++.+.+|++...-.+.+..
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 107 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYS 107 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=40.73 E-value=1.8e+02 Score=30.81 Aligned_cols=70 Identities=24% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD---------------------ESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~---------------------~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+-+.+.|+..|..|-..|..+|..+.--.+ .-..|-+.|..+++.||.||..+|.+.+-
T Consensus 61 vrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAka 140 (351)
T PF07058_consen 61 VRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKA 140 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhcchhhhhc
Q 013166 316 VTGLNPLLLAR 326 (448)
Q Consensus 316 l~~ln~~l~~~ 326 (448)
-..|+.-|+.+
T Consensus 141 EaQLkeK~klR 151 (351)
T PF07058_consen 141 EAQLKEKLKLR 151 (351)
T ss_pred HHHHHHHHHHH
No 497
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.70 E-value=4.4e+02 Score=31.20 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+.++-.|-+..-|+--+|-|.==+..=.+|-.-.++...|...++.++..+-.++..+...=..-..+-..|.--|+.-+
T Consensus 456 kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrD 535 (861)
T PF15254_consen 456 KNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRD 535 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHH
Q ss_pred HHHHHHhhcchhhh
Q 013166 311 ETVKRVTGLNPLLL 324 (448)
Q Consensus 311 ~~v~Rl~~ln~~l~ 324 (448)
.+|.||+-|++-||
T Consensus 536 aEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 536 AEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHH
No 498
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=40.64 E-value=2.3e+02 Score=27.91 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 244 ESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
+=.||-|+=-.+.+.-|-..-.-++.-|..|...+.+++ .|...|+.|+.+.++||..+-++.+ +|..+
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR----~LKe~NqkLqedNqELRdLCCFLDd--dRqKg 88 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIR----GLKEVNQKLQEDNQELRDLCCFLDD--DRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcccch--hHHHh
No 499
>PRK11281 hypothetical protein; Provisional
Probab=40.63 E-value=3.3e+02 Score=33.19 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRK-----------QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RK-----------q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
+|.+.|+-.||.--+.-|.+- ..+...|+.+...|+.+|..++.++....+...-+..+=..+++++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 013166 302 LRAKVKMAEETVKR 315 (448)
Q Consensus 302 Lr~kLk~aE~~v~R 315 (448)
++++++.+++.+..
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
No 500
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=40.60 E-value=5e+02 Score=29.01 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.+..+|+.+=-+...+-|.+-......|+.++..|..+.....+....+.+....|..+...++....+|++.-..++..
T Consensus 81 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~i 160 (779)
T PRK11091 81 EESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSF 160 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 013166 313 VK 314 (448)
Q Consensus 313 v~ 314 (448)
++
T Consensus 161 l~ 162 (779)
T PRK11091 161 LD 162 (779)
T ss_pred Hh
Done!