Query 013166
Match_columns 448
No_of_seqs 217 out of 743
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 2.1E-14 7.1E-19 110.2 6.8 53 234-286 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.3 2E-11 6.8E-16 95.5 9.1 54 233-286 1-54 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 1E-10 3.5E-15 90.7 8.9 50 234-283 1-50 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 5.3E-11 1.8E-15 93.6 7.0 47 240-286 15-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 3.3E-10 1.1E-14 88.2 7.5 50 234-283 1-50 (62)
6 1gd2_E Transcription factor PA 98.9 5.6E-09 1.9E-13 83.9 8.3 57 236-306 10-66 (70)
7 1ci6_A Transcription factor AT 98.8 9.1E-09 3.1E-13 80.6 8.0 58 234-298 2-59 (63)
8 1gu4_A CAAT/enhancer binding p 98.4 8.8E-07 3E-11 72.4 9.5 54 229-282 10-63 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 1.1E-06 3.7E-11 73.3 9.8 52 229-280 10-61 (87)
10 3a5t_A Transcription factor MA 98.4 2.2E-08 7.5E-13 86.3 -2.3 44 231-274 34-77 (107)
11 2wt7_B Transcription factor MA 98.1 2.2E-05 7.6E-10 65.8 9.8 50 231-280 24-73 (90)
12 2oqq_A Transcription factor HY 96.9 0.0018 6.3E-08 47.2 6.1 39 254-299 2-40 (42)
13 3hnw_A Uncharacterized protein 95.7 0.083 2.8E-06 47.0 10.8 61 252-312 72-132 (138)
14 1skn_P DNA-binding domain of S 95.3 0.0082 2.8E-07 50.4 2.6 32 231-262 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 95.0 0.22 7.4E-06 41.1 10.3 49 256-304 7-55 (81)
16 2jee_A YIIU; FTSZ, septum, coi 94.6 0.2 6.9E-06 41.3 9.1 53 256-308 21-73 (81)
17 1deb_A APC protein, adenomatou 94.6 0.11 3.8E-06 39.4 6.8 46 257-302 5-50 (54)
18 3a7p_A Autophagy protein 16; c 94.1 0.37 1.3E-05 43.8 10.4 38 262-299 96-133 (152)
19 2w6a_A ARF GTPase-activating p 93.8 0.23 8E-06 38.8 7.3 41 257-297 22-62 (63)
20 3hnw_A Uncharacterized protein 93.4 0.56 1.9E-05 41.6 10.4 61 257-317 70-130 (138)
21 1wlq_A Geminin; coiled-coil; 2 92.9 0.5 1.7E-05 39.1 8.4 50 265-318 34-83 (83)
22 1go4_E MAD1 (mitotic arrest de 92.5 0.32 1.1E-05 41.5 7.0 31 256-286 13-43 (100)
23 2dfs_A Myosin-5A; myosin-V, in 92.3 1.5 5.2E-05 50.0 14.4 29 282-310 1022-1050(1080)
24 3u1c_A Tropomyosin alpha-1 cha 91.4 3.9 0.00013 34.2 12.6 47 256-302 24-70 (101)
25 2w83_C C-JUN-amino-terminal ki 91.3 0.82 2.8E-05 37.3 7.8 49 258-306 5-60 (77)
26 3s9g_A Protein hexim1; cyclin 90.9 0.79 2.7E-05 39.1 7.7 19 259-277 41-59 (104)
27 1ic2_A Tropomyosin alpha chain 90.6 1.4 4.7E-05 35.4 8.7 57 260-316 4-60 (81)
28 3u59_A Tropomyosin beta chain; 90.4 3.1 0.00011 34.6 11.0 52 255-306 23-74 (101)
29 3u1c_A Tropomyosin alpha-1 cha 90.3 7.2 0.00025 32.6 14.1 78 242-319 17-94 (101)
30 3a7p_A Autophagy protein 16; c 90.3 4.8 0.00016 36.6 12.7 58 263-320 69-126 (152)
31 3oja_B Anopheles plasmodium-re 90.2 1.9 6.6E-05 44.3 11.5 62 255-316 509-570 (597)
32 3m9b_A Proteasome-associated A 90.0 0.29 1E-05 47.7 4.9 45 277-321 55-99 (251)
33 1c1g_A Tropomyosin; contractIl 90.0 9 0.00031 33.7 14.3 22 285-306 232-253 (284)
34 2v71_A Nuclear distribution pr 89.5 2.5 8.7E-05 39.5 10.6 56 257-312 90-145 (189)
35 2wt7_A Proto-oncogene protein 89.5 4.3 0.00015 31.2 10.3 38 276-313 23-60 (63)
36 1hjb_A Ccaat/enhancer binding 89.4 3 0.0001 34.5 9.9 38 277-314 37-74 (87)
37 3u59_A Tropomyosin beta chain; 89.3 8.4 0.00029 31.9 14.1 81 239-319 14-94 (101)
38 1ci6_A Transcription factor AT 89.3 1 3.6E-05 34.8 6.6 40 274-313 21-60 (63)
39 2v66_B Nuclear distribution pr 88.9 11 0.00036 32.6 13.9 54 256-309 36-89 (111)
40 3oja_B Anopheles plasmodium-re 88.9 6.8 0.00023 40.2 14.5 63 258-320 505-567 (597)
41 2v71_A Nuclear distribution pr 88.8 11 0.00036 35.4 14.3 51 263-313 89-139 (189)
42 1t2k_D Cyclic-AMP-dependent tr 88.7 1.2 4.2E-05 33.9 6.6 37 276-312 22-58 (61)
43 2eqb_B RAB guanine nucleotide 88.7 4.2 0.00014 34.4 10.4 52 255-306 12-63 (97)
44 2v4h_A NF-kappa-B essential mo 88.6 7.6 0.00026 33.6 12.1 75 240-314 30-107 (110)
45 1wle_A Seryl-tRNA synthetase; 88.1 6.4 0.00022 41.5 13.8 82 255-336 70-163 (501)
46 3o0z_A RHO-associated protein 87.9 6.7 0.00023 36.1 12.1 70 234-310 69-138 (168)
47 3o0z_A RHO-associated protein 87.5 5.4 0.00018 36.8 11.2 51 248-300 29-79 (168)
48 3cve_A Homer protein homolog 1 87.1 3 0.0001 33.6 8.2 48 258-305 3-50 (72)
49 1gd2_E Transcription factor PA 87.0 1.3 4.4E-05 35.4 6.0 26 256-281 37-62 (70)
50 2wvr_A Geminin; DNA replicatio 87.0 2.8 9.7E-05 39.8 9.2 50 265-318 111-160 (209)
51 3m48_A General control protein 86.9 0.68 2.3E-05 32.3 3.7 26 257-282 2-27 (33)
52 3he5_A Synzip1; heterodimeric 86.9 2.3 8E-05 31.2 6.7 24 256-279 4-27 (49)
53 3jsv_C NF-kappa-B essential mo 86.8 4.8 0.00016 34.0 9.6 78 239-316 7-87 (94)
54 2dfs_A Myosin-5A; myosin-V, in 86.5 6.1 0.00021 45.2 13.4 15 34-48 699-713 (1080)
55 1p9i_A Cortexillin I/GCN4 hybr 86.5 0.81 2.8E-05 30.8 3.8 24 283-306 6-29 (31)
56 2c9l_Y EB1, zebra, BZLF1 trans 86.5 3.5 0.00012 31.9 7.8 36 239-274 6-41 (63)
57 1kd8_B GABH BLL, GCN4 acid bas 86.2 1.2 4.1E-05 31.5 4.7 29 256-284 2-30 (36)
58 1gu4_A CAAT/enhancer binding p 85.9 4.2 0.00014 33.0 8.5 30 279-308 39-68 (78)
59 1ses_A Seryl-tRNA synthetase; 85.8 7.5 0.00026 39.8 12.5 82 255-336 28-111 (421)
60 3s9g_A Protein hexim1; cyclin 85.8 5 0.00017 34.3 9.2 52 273-324 34-85 (104)
61 3cvf_A Homer-3, homer protein 85.8 1.8 6.3E-05 35.4 6.4 49 257-305 8-56 (79)
62 2oxj_A Hybrid alpha/beta pepti 85.4 1.2 4.1E-05 31.2 4.4 27 256-282 2-28 (34)
63 2dq0_A Seryl-tRNA synthetase; 85.1 12 0.00043 38.6 13.9 81 257-337 33-117 (455)
64 3s4r_A Vimentin; alpha-helix, 85.1 7.8 0.00027 32.1 10.1 49 259-309 20-68 (93)
65 1i84_S Smooth muscle myosin he 84.4 5.4 0.00019 45.6 11.8 19 288-306 918-936 (1184)
66 3vmx_A Voltage-gated hydrogen 84.2 2.9 0.0001 31.3 6.3 37 261-297 3-39 (48)
67 3qne_A Seryl-tRNA synthetase, 83.8 13 0.00046 39.0 13.6 60 257-316 35-97 (485)
68 2zxx_A Geminin; coiled-coil, c 83.8 4.2 0.00014 33.3 7.7 42 265-306 30-71 (79)
69 3bas_A Myosin heavy chain, str 83.8 16 0.00056 29.7 12.8 52 255-306 35-86 (89)
70 2v66_B Nuclear distribution pr 83.2 11 0.00038 32.5 10.5 20 259-278 7-26 (111)
71 1jnm_A Proto-oncogene C-JUN; B 83.1 1.4 4.7E-05 33.8 4.3 35 276-310 22-56 (62)
72 3mq7_A Bone marrow stromal ant 82.8 5.7 0.0002 34.8 8.5 35 292-326 73-107 (121)
73 1kd8_A GABH AIV, GCN4 acid bas 82.6 1.8 6E-05 30.7 4.3 28 256-283 2-29 (36)
74 3a2a_A Voltage-gated hydrogen 82.3 3.3 0.00011 32.0 6.0 36 261-296 10-45 (58)
75 2xdj_A Uncharacterized protein 82.3 8.7 0.0003 31.4 9.1 41 257-297 22-62 (83)
76 3vkg_A Dynein heavy chain, cyt 81.8 4.7 0.00016 51.1 10.6 56 262-317 2028-2083(3245)
77 2oa5_A Hypothetical protein BQ 81.8 7.8 0.00027 33.6 8.9 26 255-280 8-33 (110)
78 2oqq_A Transcription factor HY 81.7 4.6 0.00016 29.5 6.3 35 279-313 6-40 (42)
79 4h22_A Leucine-rich repeat fli 81.7 13 0.00045 31.8 10.2 14 229-242 5-18 (103)
80 3he5_B Synzip2; heterodimeric 81.6 7.4 0.00025 28.8 7.5 44 270-313 4-47 (52)
81 3c3f_A Alpha/beta peptide with 81.5 2.2 7.4E-05 29.9 4.4 27 256-282 2-28 (34)
82 3na7_A HP0958; flagellar bioge 81.4 16 0.00056 34.5 12.1 53 258-310 93-145 (256)
83 1i84_S Smooth muscle myosin he 81.1 8.9 0.0003 43.9 11.9 23 290-312 913-935 (1184)
84 4etp_A Kinesin-like protein KA 81.0 4.7 0.00016 41.1 8.7 30 288-317 29-58 (403)
85 3a7o_A Autophagy protein 16; c 81.0 5.7 0.00019 32.1 7.3 50 255-304 25-74 (75)
86 3iv1_A Tumor susceptibility ge 81.0 16 0.00055 29.8 10.1 61 251-311 14-74 (78)
87 3bas_A Myosin heavy chain, str 80.9 12 0.00041 30.5 9.5 49 262-310 35-83 (89)
88 2kz5_A Transcription factor NF 80.8 0.14 4.8E-06 42.9 -2.1 25 231-255 63-87 (91)
89 3efg_A Protein SLYX homolog; x 80.8 4.1 0.00014 32.9 6.6 25 255-279 14-38 (78)
90 3swf_A CGMP-gated cation chann 80.4 7.9 0.00027 31.4 8.0 49 258-309 3-51 (74)
91 2dgc_A Protein (GCN4); basic d 80.3 2.1 7.2E-05 33.2 4.5 32 275-306 29-60 (63)
92 1x8y_A Lamin A/C; structural p 80.2 14 0.00049 29.9 9.7 56 252-307 25-80 (86)
93 3m91_A Proteasome-associated A 80.1 6.9 0.00024 29.5 7.1 21 259-279 13-33 (51)
94 3ghg_A Fibrinogen alpha chain; 79.9 10 0.00034 40.6 10.8 42 273-314 114-155 (562)
95 4emc_A Monopolin complex subun 79.8 7 0.00024 36.7 8.6 31 257-287 15-45 (190)
96 3c3g_A Alpha/beta peptide with 79.5 2.8 9.7E-05 29.1 4.4 26 257-282 2-27 (33)
97 3he4_A Synzip6; heterodimeric 79.3 0.81 2.8E-05 34.4 1.7 31 285-315 26-56 (56)
98 3tnu_B Keratin, type II cytosk 79.2 16 0.00054 31.4 10.2 30 257-286 45-74 (129)
99 2hy6_A General control protein 79.0 2.7 9.4E-05 29.4 4.2 28 256-283 2-29 (34)
100 1uo4_A General control protein 78.9 2.4 8.2E-05 29.7 3.9 28 256-283 2-29 (34)
101 4b4t_K 26S protease regulatory 78.9 2.9 9.9E-05 43.0 6.4 56 264-319 37-92 (428)
102 3u06_A Protein claret segregat 78.8 5.6 0.00019 40.8 8.4 54 265-318 6-59 (412)
103 3mq9_A Bone marrow stromal ant 78.7 23 0.00078 35.5 12.8 27 291-317 444-470 (471)
104 3mq7_A Bone marrow stromal ant 78.5 9.8 0.00034 33.3 8.5 46 259-304 61-106 (121)
105 1gk6_A Vimentin; intermediate 78.3 7.6 0.00026 29.6 7.0 50 257-306 2-51 (59)
106 4etp_A Kinesin-like protein KA 78.1 5.8 0.0002 40.4 8.3 53 253-305 8-60 (403)
107 4emc_A Monopolin complex subun 78.1 15 0.00051 34.5 10.3 61 259-319 24-84 (190)
108 3tnu_A Keratin, type I cytoske 78.0 18 0.00062 31.2 10.3 28 258-285 48-75 (131)
109 2yy0_A C-MYC-binding protein; 78.0 3.4 0.00012 31.2 4.9 18 262-279 19-36 (53)
110 1ic2_A Tropomyosin alpha chain 77.9 17 0.00058 29.0 9.3 55 255-309 20-74 (81)
111 2bni_A General control protein 77.8 2.7 9.3E-05 29.4 3.9 27 256-282 2-28 (34)
112 3efg_A Protein SLYX homolog; x 77.4 5.7 0.00019 32.1 6.4 48 258-305 10-57 (78)
113 2i1j_A Moesin; FERM, coiled-co 77.4 1.8 6.2E-05 46.1 4.5 61 257-317 337-397 (575)
114 3swy_A Cyclic nucleotide-gated 77.1 9.6 0.00033 28.2 6.9 44 259-305 2-45 (46)
115 2ocy_A RAB guanine nucleotide 77.0 43 0.0015 30.4 13.2 35 283-317 108-142 (154)
116 3m0d_C TNF receptor-associated 76.8 20 0.00068 27.7 9.2 58 253-310 4-61 (65)
117 2wq1_A General control protein 76.8 3.3 0.00011 28.8 4.1 26 257-282 2-27 (33)
118 1nkp_B MAX protein, MYC proto- 76.8 4.3 0.00015 32.4 5.5 35 282-316 46-80 (83)
119 3na7_A HP0958; flagellar bioge 76.8 34 0.0011 32.3 12.7 9 262-270 104-112 (256)
120 1nkp_B MAX protein, MYC proto- 76.7 2.9 0.0001 33.3 4.5 9 291-299 69-77 (83)
121 3u06_A Protein claret segregat 76.3 6.5 0.00022 40.3 8.0 51 255-305 10-60 (412)
122 3m9b_A Proteasome-associated A 76.0 3.5 0.00012 40.2 5.6 27 256-282 55-81 (251)
123 3q0x_A Centriole protein; cent 76.0 13 0.00045 35.6 9.5 44 232-281 161-204 (228)
124 3m91_A Proteasome-associated A 75.7 11 0.00039 28.3 7.2 40 278-317 11-50 (51)
125 2efr_A General control protein 75.3 25 0.00086 31.8 10.7 59 242-300 57-115 (155)
126 2fxo_A Myosin heavy chain, car 74.8 40 0.0014 28.9 14.4 58 258-315 65-122 (129)
127 2yy0_A C-MYC-binding protein; 74.3 5.4 0.00018 30.1 5.1 22 272-293 22-43 (53)
128 1dip_A Delta-sleep-inducing pe 74.3 1.8 6.1E-05 35.3 2.6 25 272-296 18-42 (78)
129 3qh9_A Liprin-beta-2; coiled-c 74.0 26 0.00089 28.8 9.4 23 295-317 52-74 (81)
130 3i00_A HIP-I, huntingtin-inter 73.7 17 0.00059 31.6 8.9 49 250-305 35-83 (120)
131 2xv5_A Lamin-A/C; structural p 73.7 19 0.00066 28.8 8.5 50 257-306 7-56 (74)
132 2oto_A M protein; helical coil 73.5 31 0.0011 30.4 10.8 31 258-288 53-83 (155)
133 2xnx_M M protein, M1-BC1; cell 73.5 40 0.0014 30.4 11.4 69 256-324 34-114 (146)
134 2lw1_A ABC transporter ATP-bin 73.4 20 0.00067 29.0 8.7 52 254-305 21-78 (89)
135 3oja_A Leucine-rich immune mol 73.1 19 0.00065 36.3 10.5 48 269-316 428-475 (487)
136 3tnu_B Keratin, type II cytosk 73.0 30 0.001 29.6 10.3 27 257-283 38-64 (129)
137 3trt_A Vimentin; cytoskeleton, 73.0 31 0.0011 26.8 10.2 20 296-315 55-74 (77)
138 1wt6_A Myotonin-protein kinase 72.9 32 0.0011 28.3 9.7 57 242-308 14-70 (81)
139 1wt6_A Myotonin-protein kinase 72.6 39 0.0013 27.8 10.3 12 263-274 46-57 (81)
140 1wle_A Seryl-tRNA synthetase; 72.4 19 0.00064 37.9 10.5 58 259-316 81-149 (501)
141 3oja_A Leucine-rich immune mol 72.0 27 0.00093 35.1 11.3 53 258-310 424-476 (487)
142 1dh3_A Transcription factor CR 72.0 3.6 0.00012 31.1 3.7 30 276-305 22-51 (55)
143 2wt7_B Transcription factor MA 71.2 44 0.0015 27.8 10.4 53 247-306 29-85 (90)
144 3he5_A Synzip1; heterodimeric 71.2 21 0.00071 26.2 7.3 16 264-279 5-20 (49)
145 1dip_A Delta-sleep-inducing pe 70.7 4.2 0.00014 33.1 4.0 24 255-278 22-45 (78)
146 1ik9_A DNA repair protein XRCC 70.7 28 0.00094 32.8 10.3 15 108-122 60-74 (213)
147 1a93_B MAX protein, coiled coi 70.6 5.8 0.0002 27.8 4.1 22 280-301 11-32 (34)
148 2ve7_C Kinetochore protein NUF 70.6 5.7 0.00019 38.2 5.7 64 232-309 118-181 (250)
149 3vkg_A Dynein heavy chain, cyt 70.0 17 0.00057 46.4 10.9 77 232-308 2010-2102(3245)
150 1m1j_B Fibrinogen beta chain; 69.8 59 0.002 34.1 13.4 24 293-316 171-194 (464)
151 1fmh_A General control protein 69.2 9.2 0.00031 26.1 4.7 26 258-283 4-29 (33)
152 2dq3_A Seryl-tRNA synthetase; 68.9 10 0.00034 38.8 7.4 81 257-337 32-116 (425)
153 1joc_A EEA1, early endosomal a 68.9 30 0.001 29.6 9.4 42 255-296 11-52 (125)
154 3s4r_A Vimentin; alpha-helix, 68.8 41 0.0014 27.7 9.7 32 275-306 55-86 (93)
155 1uii_A Geminin; human, DNA rep 68.6 20 0.00069 29.6 7.7 31 266-296 43-73 (83)
156 2dq0_A Seryl-tRNA synthetase; 68.0 19 0.00066 37.2 9.3 59 258-316 41-102 (455)
157 2w83_C C-JUN-amino-terminal ki 67.8 9.3 0.00032 31.2 5.4 49 268-316 29-77 (77)
158 3q8t_A Beclin-1; autophagy, AT 67.7 52 0.0018 27.2 12.7 54 259-312 22-75 (96)
159 3q8t_A Beclin-1; autophagy, AT 67.4 52 0.0018 27.2 11.1 28 254-281 24-51 (96)
160 2ocy_A RAB guanine nucleotide 67.2 31 0.0011 31.3 9.4 40 287-326 105-145 (154)
161 1joc_A EEA1, early endosomal a 66.7 16 0.00053 31.5 7.1 42 283-324 11-52 (125)
162 2b5u_A Colicin E3; high resolu 66.6 81 0.0028 33.7 13.6 60 257-316 316-375 (551)
163 1t6f_A Geminin; coiled-coil, c 66.3 11 0.00036 26.8 4.7 29 268-296 6-34 (37)
164 2ve7_C Kinetochore protein NUF 65.5 3.9 0.00013 39.3 3.3 47 243-289 136-182 (250)
165 2r2v_A GCN4 leucine zipper; co 65.3 9.7 0.00033 26.7 4.4 27 256-282 2-28 (34)
166 3qne_A Seryl-tRNA synthetase, 65.2 27 0.00091 36.8 9.8 58 259-316 44-104 (485)
167 2wuj_A Septum site-determining 64.5 5.3 0.00018 30.2 3.3 25 256-280 28-52 (57)
168 2oto_A M protein; helical coil 64.3 49 0.0017 29.1 10.0 50 260-309 34-83 (155)
169 2xdj_A Uncharacterized protein 64.1 58 0.002 26.5 9.8 49 261-309 5-53 (83)
170 1deq_A Fibrinogen (alpha chain 63.8 24 0.00081 36.4 8.8 44 270-313 114-157 (390)
171 2oxj_A Hybrid alpha/beta pepti 63.8 11 0.00036 26.5 4.3 26 280-305 5-30 (34)
172 1am9_A Srebp-1A, protein (ster 63.4 10 0.00036 30.3 5.0 71 237-308 5-75 (82)
173 1uix_A RHO-associated kinase; 63.3 39 0.0013 27.1 8.2 32 260-291 2-33 (71)
174 2j5u_A MREC protein; bacterial 63.3 3.4 0.00012 39.6 2.5 15 267-281 24-38 (255)
175 3lss_A Seryl-tRNA synthetase; 63.2 48 0.0017 34.8 11.3 41 296-336 109-151 (484)
176 3nmd_A CGMP dependent protein 63.2 24 0.00083 28.4 7.0 27 253-279 38-64 (72)
177 3ol1_A Vimentin; structural ge 63.1 70 0.0024 27.2 10.8 17 257-273 22-38 (119)
178 3e98_A GAF domain of unknown f 62.9 18 0.00063 34.5 7.5 50 257-310 67-116 (252)
179 1go4_E MAD1 (mitotic arrest de 62.4 12 0.00042 31.7 5.4 30 277-306 13-42 (100)
180 2wuj_A Septum site-determining 62.4 7.4 0.00025 29.5 3.7 29 278-306 29-57 (57)
181 2q6q_A Spindle POLE BODY compo 62.2 27 0.00092 28.1 7.0 37 272-308 27-63 (74)
182 2js5_A Uncharacterized protein 62.2 60 0.002 26.1 9.1 54 257-310 5-65 (71)
183 2fic_A Bridging integrator 1; 60.9 68 0.0023 29.4 10.8 28 274-304 184-211 (251)
184 1gk4_A Vimentin; intermediate 60.9 63 0.0021 25.9 12.1 72 233-306 6-77 (84)
185 1gk7_A Vimentin; intermediate 60.8 11 0.00038 26.8 4.1 29 272-300 9-37 (39)
186 1nkp_A C-MYC, MYC proto-oncoge 60.6 22 0.00074 29.0 6.5 32 284-315 53-84 (88)
187 1m1j_A Fibrinogen alpha subuni 59.7 49 0.0017 34.9 10.4 46 270-315 112-157 (491)
188 2b9c_A Striated-muscle alpha t 59.5 96 0.0033 27.6 12.9 76 234-315 37-112 (147)
189 1nkp_A C-MYC, MYC proto-oncoge 59.2 35 0.0012 27.7 7.5 24 280-303 63-86 (88)
190 3i00_A HIP-I, huntingtin-inter 58.5 91 0.0031 27.0 10.4 52 255-309 15-66 (120)
191 3ra3_B P2F; coiled coil domain 58.3 7.9 0.00027 25.5 2.7 22 288-309 5-26 (28)
192 1gk4_A Vimentin; intermediate 58.2 60 0.0021 26.0 8.7 23 264-286 3-25 (84)
193 3m48_A General control protein 57.7 11 0.00036 26.3 3.5 24 281-304 5-28 (33)
194 3a2a_A Voltage-gated hydrogen 57.7 17 0.00058 28.1 4.9 38 282-319 10-47 (58)
195 4dk0_A Putative MACA; alpha-ha 57.7 61 0.0021 31.0 10.3 29 287-315 119-147 (369)
196 3mov_A Lamin-B1; LMNB1, B-type 57.5 13 0.00045 31.0 4.7 50 255-304 37-86 (95)
197 1am9_A Srebp-1A, protein (ster 57.4 21 0.00072 28.5 5.8 27 254-280 49-75 (82)
198 1s1c_X RHO-associated, coiled- 57.0 45 0.0015 26.8 7.5 31 259-289 3-33 (71)
199 2w6b_A RHO guanine nucleotide 56.5 56 0.0019 25.1 7.6 36 281-316 15-50 (56)
200 1kd8_B GABH BLL, GCN4 acid bas 56.0 20 0.00069 25.4 4.7 21 286-306 11-31 (36)
201 1lwu_C Fibrinogen gamma chain; 56.0 27 0.00093 34.9 7.6 15 295-309 38-52 (323)
202 3htk_A Structural maintenance 55.7 48 0.0016 24.4 7.3 7 296-302 46-52 (60)
203 3mq9_A Bone marrow stromal ant 55.7 73 0.0025 31.8 10.8 10 110-119 286-295 (471)
204 1ses_A Seryl-tRNA synthetase; 55.3 27 0.00093 35.6 7.7 57 259-315 39-96 (421)
205 1nlw_A MAD protein, MAX dimeri 55.3 41 0.0014 26.9 7.2 26 284-309 48-73 (80)
206 3tnu_A Keratin, type I cytoske 54.9 1E+02 0.0035 26.4 11.6 49 256-304 78-126 (131)
207 2e7s_A RAB guanine nucleotide 54.3 57 0.002 29.0 8.6 51 256-306 33-83 (135)
208 3mov_A Lamin-B1; LMNB1, B-type 54.1 93 0.0032 25.8 10.3 21 263-283 13-33 (95)
209 2fxo_A Myosin heavy chain, car 53.9 1E+02 0.0036 26.3 14.6 58 259-316 38-102 (129)
210 3ra3_A P1C; coiled coil domain 53.9 8.3 0.00028 25.4 2.3 21 287-307 4-24 (28)
211 2f1m_A Acriflavine resistance 53.7 80 0.0027 29.0 10.0 28 287-314 102-129 (277)
212 3vmx_A Voltage-gated hydrogen 53.4 37 0.0013 25.4 6.0 37 282-318 3-39 (48)
213 3ra3_A P1C; coiled coil domain 53.0 12 0.0004 24.7 2.9 25 264-288 2-26 (28)
214 1kd8_A GABH AIV, GCN4 acid bas 52.9 20 0.00068 25.4 4.2 21 287-307 12-32 (36)
215 1p9i_A Cortexillin I/GCN4 hybr 52.7 18 0.00062 24.3 3.8 26 258-283 2-27 (31)
216 3lss_A Seryl-tRNA synthetase; 51.7 61 0.0021 34.0 9.7 27 289-315 109-136 (484)
217 1uii_A Geminin; human, DNA rep 51.7 60 0.0021 26.8 7.7 34 287-320 43-76 (83)
218 3m0a_A TNF receptor-associated 50.8 78 0.0027 23.9 9.3 53 258-310 8-60 (66)
219 3csx_A Putative uncharacterize 50.7 58 0.002 26.7 7.4 14 297-310 64-77 (81)
220 2wq1_A General control protein 50.6 21 0.00074 24.8 4.0 24 295-318 5-28 (33)
221 3c3f_A Alpha/beta peptide with 50.1 25 0.00085 24.6 4.3 24 281-304 6-29 (34)
222 4fla_A Regulation of nuclear P 49.9 1.4E+02 0.0048 26.6 11.6 45 260-304 77-121 (152)
223 3he5_B Synzip2; heterodimeric 49.9 66 0.0023 23.8 6.8 36 281-316 8-43 (52)
224 3fpp_A Macrolide-specific effl 49.5 73 0.0025 30.2 9.2 32 284-315 115-146 (341)
225 4ati_A MITF, microphthalmia-as 49.4 46 0.0016 28.4 7.0 28 238-265 27-54 (118)
226 1jcd_A Major outer membrane li 48.9 62 0.0021 24.4 6.8 20 257-276 6-25 (52)
227 2zvf_A Alanyl-tRNA synthetase; 48.9 14 0.00049 32.2 3.9 30 280-309 29-58 (171)
228 3ghg_A Fibrinogen alpha chain; 48.5 73 0.0025 34.2 9.6 94 222-319 49-153 (562)
229 3brv_B NF-kappa-B essential mo 48.4 1E+02 0.0036 24.6 9.1 54 264-317 10-67 (70)
230 2p4v_A Transcription elongatio 48.3 53 0.0018 29.2 7.5 26 257-282 11-37 (158)
231 1a93_B MAX protein, coiled coi 48.2 30 0.001 24.3 4.5 26 289-314 6-31 (34)
232 3nmd_A CGMP dependent protein 48.0 23 0.00077 28.6 4.5 31 272-302 36-66 (72)
233 1jcd_A Major outer membrane li 47.8 87 0.003 23.6 7.9 17 263-279 5-21 (52)
234 4dk0_A Putative MACA; alpha-ha 47.5 1.1E+02 0.0038 29.2 10.2 38 277-314 116-153 (369)
235 2akf_A Coronin-1A; coiled coil 47.5 35 0.0012 23.3 4.6 26 289-314 5-30 (32)
236 2j5u_A MREC protein; bacterial 47.5 7.8 0.00027 37.1 2.1 19 259-277 23-41 (255)
237 3swk_A Vimentin; cytoskeleton, 47.4 1E+02 0.0036 24.9 8.5 31 258-288 3-40 (86)
238 1m1j_C Fibrinogen gamma chain; 47.2 76 0.0026 32.7 9.4 26 291-316 106-131 (409)
239 1zme_C Proline utilization tra 47.1 16 0.00056 27.2 3.4 24 255-278 44-67 (70)
240 3w03_C DNA repair protein XRCC 47.0 27 0.00091 32.6 5.5 30 255-284 152-181 (184)
241 1hlo_A Protein (transcription 46.9 18 0.0006 28.6 3.8 58 248-305 22-79 (80)
242 3c3g_A Alpha/beta peptide with 46.7 30 0.001 24.0 4.3 23 282-304 6-28 (33)
243 1lwu_C Fibrinogen gamma chain; 46.2 46 0.0016 33.3 7.4 17 295-311 31-47 (323)
244 1x8y_A Lamin A/C; structural p 45.9 36 0.0012 27.5 5.5 19 282-300 34-52 (86)
245 1uo4_A General control protein 45.2 29 0.00099 24.3 4.0 18 285-302 10-27 (34)
246 2xzr_A Immunoglobulin-binding 44.6 1.5E+02 0.0051 25.3 13.8 47 276-322 62-108 (114)
247 3iox_A AGI/II, PA; alpha helix 44.2 96 0.0033 32.9 9.7 60 257-316 36-99 (497)
248 2dq3_A Seryl-tRNA synthetase; 44.2 17 0.00058 37.1 4.1 59 258-316 40-101 (425)
249 4b4t_M 26S protease regulatory 43.5 21 0.00073 36.7 4.7 40 280-319 36-75 (434)
250 1lrz_A FEMA, factor essential 43.5 64 0.0022 32.3 8.1 57 256-313 248-304 (426)
251 1grj_A GREA protein; transcrip 43.3 81 0.0028 27.9 7.9 26 257-282 11-37 (158)
252 1ik9_A DNA repair protein XRCC 43.1 1.2E+02 0.0041 28.4 9.4 26 255-280 139-164 (213)
253 1x79_B RAB GTPase binding effe 43.1 1.6E+02 0.0055 25.3 10.0 15 310-324 90-104 (112)
254 3oa7_A Head morphogenesis prot 42.8 76 0.0026 30.1 7.9 40 264-303 32-71 (206)
255 1deb_A APC protein, adenomatou 42.7 89 0.003 23.7 6.7 34 280-313 7-40 (54)
256 2yo3_A General control protein 42.7 96 0.0033 30.5 8.9 46 278-323 218-263 (268)
257 3plt_A Sphingolipid long chain 42.4 1.5E+02 0.0051 28.6 10.0 72 233-309 92-165 (234)
258 1fmh_B General control protein 42.3 41 0.0014 22.9 4.3 24 283-306 8-31 (33)
259 4gkw_A Spindle assembly abnorm 42.2 1.9E+02 0.0066 25.9 10.7 26 298-323 99-124 (167)
260 1fmh_A General control protein 41.9 32 0.0011 23.4 3.8 25 281-305 6-30 (33)
261 4ath_A MITF, microphthalmia-as 41.9 51 0.0017 27.1 5.8 20 285-304 58-77 (83)
262 2ve7_A Kinetochore protein HEC 41.2 50 0.0017 32.4 6.8 30 261-290 184-213 (315)
263 2k48_A Nucleoprotein; viral pr 40.6 1.7E+02 0.006 25.1 9.1 30 256-285 36-65 (107)
264 2hy6_A General control protein 40.4 43 0.0015 23.4 4.3 24 282-305 7-30 (34)
265 3htk_A Structural maintenance 40.2 1.1E+02 0.0037 22.5 9.2 21 258-278 15-35 (60)
266 1ez3_A Syntaxin-1A; three heli 39.7 88 0.003 25.7 7.2 17 293-309 91-107 (127)
267 2l5g_B Putative uncharacterize 39.7 84 0.0029 22.9 5.9 32 281-312 7-38 (42)
268 4ath_A MITF, microphthalmia-as 39.5 1.2E+02 0.0039 25.0 7.6 32 254-285 48-79 (83)
269 1wlq_A Geminin; coiled-coil; 2 39.1 41 0.0014 27.8 4.8 33 287-319 35-67 (83)
270 2bni_A General control protein 39.1 30 0.001 24.2 3.4 24 281-304 6-29 (34)
271 3lay_A Zinc resistance-associa 38.5 2.3E+02 0.0077 25.9 10.3 20 284-303 114-133 (175)
272 4b4t_K 26S protease regulatory 38.3 43 0.0015 34.3 6.0 45 258-309 45-89 (428)
273 3bbp_D GRIP and coiled-coil do 38.3 29 0.00098 27.9 3.6 30 276-305 29-58 (71)
274 1m1j_C Fibrinogen gamma chain; 37.6 3.6E+02 0.012 27.7 13.8 28 254-281 40-67 (409)
275 4dzn_A Coiled-coil peptide CC- 37.5 78 0.0027 21.5 5.1 21 260-280 7-27 (33)
276 3iox_A AGI/II, PA; alpha helix 37.2 2.1E+02 0.007 30.5 10.9 18 262-279 34-51 (497)
277 2ve7_A Kinetochore protein HEC 37.2 28 0.00095 34.3 4.3 27 282-308 184-210 (315)
278 3a5t_A Transcription factor MA 37.1 2 6.9E-05 36.9 -3.4 41 270-310 59-99 (107)
279 3fpp_A Macrolide-specific effl 36.9 1.6E+02 0.0056 27.7 9.5 11 224-234 58-68 (341)
280 3thf_A Protein shroom; coiled- 36.8 2.7E+02 0.0092 26.1 11.5 71 250-320 14-86 (190)
281 1d7m_A Cortexillin I; coiled-c 36.6 1.9E+02 0.0066 24.3 9.6 56 254-309 3-58 (101)
282 1f5n_A Interferon-induced guan 36.4 2.1E+02 0.0071 30.6 11.1 12 306-317 569-580 (592)
283 2cly_A ATP synthase B chain, m 35.8 1.3E+02 0.0044 28.5 8.3 33 264-296 124-156 (214)
284 1j1d_B Troponin T, TNT; THIN f 35.6 2E+02 0.007 24.4 9.0 44 266-309 46-89 (106)
285 3lay_A Zinc resistance-associa 35.3 92 0.0031 28.5 7.1 15 293-307 116-130 (175)
286 3viq_B Mating-type switching p 35.1 1.7E+02 0.0057 24.2 7.9 26 258-283 4-29 (85)
287 1hlo_A Protein (transcription 34.6 32 0.0011 27.1 3.4 23 254-276 56-78 (80)
288 2lz1_A Nuclear factor erythroi 34.3 0.8 2.7E-05 38.4 -6.1 23 232-254 64-86 (90)
289 3q0x_A Centriole protein; cent 33.2 1.6E+02 0.0056 28.1 8.7 51 267-317 169-219 (228)
290 2r2v_A GCN4 leucine zipper; co 33.1 58 0.002 22.8 4.0 19 298-316 9-27 (34)
291 4fi5_A Nucleoprotein; structur 32.7 2.4E+02 0.0083 24.4 9.6 15 297-311 69-83 (113)
292 4b6x_A AVRRPS4, avirulence pro 32.3 2.1E+02 0.0073 23.6 8.6 21 296-316 68-88 (90)
293 4dzo_A Mitotic spindle assembl 32.2 84 0.0029 27.2 6.0 20 256-275 5-24 (123)
294 2v4h_A NF-kappa-B essential mo 32.0 2.5E+02 0.0085 24.2 10.1 44 263-306 63-106 (110)
295 3mtu_A Tropomyosin alpha-1 cha 31.7 95 0.0033 24.6 5.8 38 255-292 16-53 (75)
296 2f23_A Anti-cleavage anti-GREA 31.5 1.5E+02 0.005 26.1 7.6 23 258-280 13-35 (156)
297 2avr_X Adhesion A; antiparalle 31.3 2.3E+02 0.0079 24.7 8.5 11 306-316 91-101 (119)
298 3ghg_C Fibrinogen gamma chain; 31.2 4.4E+02 0.015 27.2 12.1 44 274-317 89-132 (411)
299 3ra3_B P2F; coiled coil domain 31.1 38 0.0013 22.3 2.7 15 267-281 5-19 (28)
300 2e7s_A RAB guanine nucleotide 31.1 1.1E+02 0.0037 27.3 6.6 22 291-312 97-118 (135)
301 2er8_A Regulatory protein Leu3 30.8 26 0.00088 26.3 2.3 21 254-274 48-68 (72)
302 2aze_A Transcription factor DP 30.6 1.2E+02 0.0042 27.5 7.0 44 237-284 8-51 (155)
303 1fmh_B General control protein 30.5 1.1E+02 0.0038 20.8 5.0 28 258-285 4-31 (33)
304 1zxa_A CGMP-dependent protein 30.4 91 0.0031 24.7 5.3 31 251-281 21-51 (67)
305 1ytz_T Troponin T; muscle, THI 30.3 2.5E+02 0.0086 23.8 8.8 60 249-308 22-88 (107)
306 2i1j_A Moesin; FERM, coiled-co 30.3 29 0.00098 36.9 3.2 11 232-242 311-321 (575)
307 2efk_A CDC42-interacting prote 30.0 3.3E+02 0.011 25.0 10.6 12 112-123 24-35 (301)
308 1oxz_A ADP-ribosylation factor 29.8 3.3E+02 0.011 25.0 10.2 25 222-246 39-63 (186)
309 3swk_A Vimentin; cytoskeleton, 29.3 2.2E+02 0.0077 22.9 8.3 38 264-301 23-60 (86)
310 2q6q_A Spindle POLE BODY compo 29.3 2.2E+02 0.0076 22.8 9.1 53 258-310 6-58 (74)
311 2w6b_A RHO guanine nucleotide 29.2 1.1E+02 0.0036 23.6 5.3 21 259-279 14-34 (56)
312 3w03_C DNA repair protein XRCC 28.9 1.1E+02 0.0037 28.4 6.5 32 255-286 145-176 (184)
313 3qh9_A Liprin-beta-2; coiled-c 28.8 2.4E+02 0.0083 23.1 9.9 54 259-312 23-76 (81)
314 3cvf_A Homer-3, homer protein 28.4 2.4E+02 0.0081 22.9 10.6 25 258-282 16-40 (79)
315 3rrk_A V-type ATPase 116 kDa s 28.4 2.7E+02 0.0091 26.8 9.6 43 255-297 226-269 (357)
316 1qsd_A Protein (beta-tubulin b 28.2 2.1E+02 0.0073 24.0 7.7 27 292-318 45-71 (106)
317 2z5i_A TM, general control pro 27.4 1.2E+02 0.004 22.6 5.2 35 244-278 8-42 (52)
318 2zvf_A Alanyl-tRNA synthetase; 27.1 1.3E+02 0.0044 26.0 6.5 29 259-287 29-57 (171)
319 3n7n_E Monopolin complex subun 26.7 14 0.00046 31.3 0.0 51 266-316 40-94 (95)
320 3ppm_A Fatty-acid amide hydrol 26.7 51 0.0017 35.1 4.4 34 241-274 30-63 (573)
321 2odv_A Plectin 1, HD1; plakin 26.7 4E+02 0.014 25.0 12.2 35 232-266 101-135 (235)
322 3c9i_A Tail needle protein GP2 26.7 4.3E+02 0.015 25.3 10.6 42 277-318 106-147 (242)
323 4dyl_A Tyrosine-protein kinase 26.6 4.9E+02 0.017 25.9 11.5 21 246-266 321-341 (406)
324 2p4w_A Transcriptional regulat 26.4 2E+02 0.0067 26.2 7.8 24 293-316 153-177 (202)
325 3he4_A Synzip6; heterodimeric 26.2 90 0.0031 23.4 4.3 34 256-289 18-51 (56)
326 3cl3_D NF-kappa-B essential mo 26.2 57 0.0019 28.9 3.8 20 289-308 54-73 (130)
327 2wg5_A General control protein 25.8 67 0.0023 26.9 4.1 27 294-320 11-37 (109)
328 3trt_A Vimentin; cytoskeleton, 25.5 2.3E+02 0.0078 21.7 9.3 34 257-290 37-70 (77)
329 1naf_A ADP-ribosylation factor 24.8 3.2E+02 0.011 24.5 8.7 25 222-246 23-47 (158)
330 4dci_A Uncharacterized protein 24.7 3.8E+02 0.013 24.0 11.0 27 254-280 28-54 (150)
331 3ljm_A Coil Ser L9C; de novo d 24.7 1.2E+02 0.0042 20.3 4.3 23 258-280 4-26 (31)
332 1fio_A SSO1 protein; four heli 24.6 2.7E+02 0.0091 24.4 8.1 19 260-278 47-65 (196)
333 1h7c_A Tubulin-specific chaper 23.9 2.5E+02 0.0084 23.7 7.3 25 293-317 48-72 (108)
334 2w6a_A ARF GTPase-activating p 23.6 2.6E+02 0.009 21.8 8.2 39 273-311 17-55 (63)
335 2akf_A Coronin-1A; coiled coil 23.5 1.6E+02 0.0056 20.0 4.8 25 259-283 3-27 (32)
336 2eqb_B RAB guanine nucleotide 23.0 3.4E+02 0.012 22.8 12.9 11 270-280 48-58 (97)
337 3gp4_A Transcriptional regulat 22.8 2.9E+02 0.01 23.7 7.8 7 232-238 45-51 (142)
338 3vbb_A Seryl-tRNA synthetase, 22.5 2E+02 0.0069 30.5 7.9 37 295-337 110-146 (522)
339 2ic9_A Nucleocapsid protein; h 22.5 3.5E+02 0.012 22.8 9.1 29 257-285 7-35 (96)
340 2efr_A General control protein 22.4 4.3E+02 0.015 23.7 14.3 13 304-316 140-152 (155)
341 4gkw_A Spindle assembly abnorm 21.8 4.4E+02 0.015 23.7 10.3 10 266-275 64-73 (167)
342 2zqm_A Prefoldin beta subunit 21.8 2.3E+02 0.0079 22.8 6.7 39 253-291 68-106 (117)
343 1gk7_A Vimentin; intermediate 21.5 64 0.0022 22.8 2.7 20 260-279 18-37 (39)
344 1qvr_A CLPB protein; coiled co 21.4 6.8E+02 0.023 27.2 12.0 45 253-297 399-458 (854)
345 3fx0_A NF-kappa-B essential mo 21.3 40 0.0014 28.5 1.8 37 252-288 35-74 (96)
346 3v86_A De novo design helix; c 21.1 1.3E+02 0.0045 19.6 3.8 16 298-313 8-23 (27)
347 2efl_A Formin-binding protein 20.8 4.9E+02 0.017 23.8 10.9 12 112-123 31-42 (305)
348 2ic6_A Nucleocapsid protein; h 20.8 3.4E+02 0.012 22.0 9.1 30 256-285 6-35 (78)
349 1deq_A Fibrinogen (alpha chain 20.6 7E+02 0.024 25.7 11.1 42 266-307 117-158 (390)
350 2oa5_A Hypothetical protein BQ 20.6 52 0.0018 28.4 2.4 18 283-300 15-32 (110)
351 3mud_A DNA repair protein XRCC 20.5 3.2E+02 0.011 25.2 7.9 33 246-278 133-165 (175)
352 3vp9_A General transcriptional 20.5 3.1E+02 0.011 22.8 7.1 28 258-285 39-66 (92)
353 3uul_A Utrophin; spectrin repe 20.4 3.1E+02 0.011 21.3 7.6 11 295-305 83-93 (118)
354 3vem_A Helicase protein MOM1; 20.4 4.2E+02 0.014 22.9 11.1 65 232-308 40-104 (115)
355 3tq7_B Microtubule-associated 20.4 1.8E+02 0.0061 23.7 5.5 32 255-286 8-39 (82)
356 3gpv_A Transcriptional regulat 20.3 2E+02 0.0069 24.8 6.3 8 232-239 59-66 (148)
357 4e61_A Protein BIM1; EB1-like 20.1 2E+02 0.0069 24.6 6.0 35 271-305 6-40 (106)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.51 E-value=2.1e-14 Score=110.17 Aligned_cols=53 Identities=34% Similarity=0.596 Sum_probs=49.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
||.+||++||+||++||+||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998887653
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.26 E-value=2e-11 Score=95.53 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
+||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|..++.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998875544433
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.17 E-value=1e-10 Score=90.70 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=46.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
||.+|+++||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988875443
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.16 E-value=5.3e-11 Score=93.56 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=41.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 240 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 240 lsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
.+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+++.
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44999999999999999999999999999999999888887776553
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.06 E-value=3.3e-10 Score=88.21 Aligned_cols=50 Identities=30% Similarity=0.444 Sum_probs=45.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
|+.+|..+||++|++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999888875443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.88 E-value=5.6e-09 Score=83.88 Aligned_cols=57 Identities=35% Similarity=0.514 Sum_probs=46.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 236 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 236 ~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.||+..||.++|..|.||++||.+||.+|..|+.++..|. .||..|+.++..|+.++
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~--------------~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTT--------------LENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999887654 55555555555555444
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.83 E-value=9.1e-09 Score=80.64 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD 298 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaq 298 (448)
|+.+++.+||.+|+|+|.||++++.+|+.++..|+.+|..|..++.. |..|+..|+.-
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~l 59 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDL 59 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999988875 44555555543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.45 E-value=8.8e-07 Score=72.44 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=45.5
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
|..+.+-..|..+|.++|+|||.++++...+++.+|..|+.||..|..++..|.
T Consensus 10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566688999999999999999999999999999999998888877543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.43 E-value=1.1e-06 Score=73.28 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=44.7
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 229 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 229 d~~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
|..+++-..|..+|.++|+|||.++++...+++.++..|+.||..|..+|..
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777889999999999999999999999999999999888888764
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.35 E-value=2.2e-08 Score=86.34 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L 274 (448)
.+.|.+||.++||.+|++||.||.++.++||.++..|..+...|
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L 77 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999998776665554433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.06 E-value=2.2e-05 Score=65.84 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
...|.+||.++||..|+-||.||.....+||.++..|..+...|..++..
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999888887777666655544
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.95 E-value=0.0018 Score=47.23 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql 299 (448)
|+|+.+||.++..|+..|.+|..++. .|..||..||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence 58999999999999999988877766 6778999887644
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.70 E-value=0.083 Score=47.00 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|..
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888888877777777777777777777777777766644
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.28 E-value=0.0082 Score=50.39 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQAHLNELET 262 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~~LeeLE~ 262 (448)
...|.+||..+||.+|+++|+||...++.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 46888999999999999999999998887763
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.03 E-value=0.22 Score=41.08 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
-++.||.+|+++-....-|..++..|.++...|..+|..++...+.|++
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~ 55 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3556666666655555555555555555555555555553333333333
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.61 E-value=0.2 Score=41.28 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
-+.-|+.+++.|+.+|..|..++..++.....+..||..|+.+....+.+|..
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888888888999999999888888766543
No 17
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.57 E-value=0.11 Score=39.44 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
.+.|-.||+.|+.||..|++++.+-..++..|+.|-.-+|+=+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4678899999999999999999999999999888877666544444
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.37 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.031 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 299 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql 299 (448)
.-+..|+.|...|.-++..++++...+..||..|-.+.
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554433
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.75 E-value=0.23 Score=38.85 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
|..-|.+|++|..-|..|..++..++.+++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45568889999999999999999999999999999999874
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.45 E-value=0.56 Score=41.65 Aligned_cols=61 Identities=10% Similarity=0.186 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+-.+..++..|+.+...+.+++.+|.+++..+..++..++.++.+|+.++..++..+.+|.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888888888888888888888888888888888887775
No 21
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=92.90 E-value=0.5 Score=39.12 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
..--.||..|..++..+...+..+..+|..|+ +|-.+++.+-++++||+|
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 34446888888888888888888889998887 566666777778888864
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=92.49 E-value=0.32 Score=41.50 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
.+..|..+++.|+.||..|++++..|.-++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888877665443
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.29 E-value=1.5 Score=50.05 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+++...|..||.+|++++.+|...+...+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888875554443
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.43 E-value=3.9 Score=34.18 Aligned_cols=47 Identities=4% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
..+.++.++..++.++..+-.++..|+.++..+..+=..+..++...
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333333333
No 25
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=91.27 E-value=0.82 Score=37.33 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql-------~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
..+-.+|..|-.||.+|...- .+|..+..+|..|+..|+.++..+++-.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 355667888888888876643 3455677777788888777777665443
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.91 E-value=0.79 Score=39.14 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~q 277 (448)
+||.+++.|+.||..|+..
T Consensus 41 ~LE~~~s~le~e~~rlr~~ 59 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLE 59 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666553
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.64 E-value=1.4 Score=35.44 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+..++..|+.+......++..+..++......+..+-.++..|.+|++.+|+.+++.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555555555555443
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.44 E-value=3.1 Score=34.61 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
...+.++.++..++.++..+-.++..|+.++..+..+=..+..++..+..+|
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554444444444444443333
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.31 E-value=7.2 Score=32.58 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
-.+.|...-..-...+.+++.+..+++.|...|.+++..+...+..+...=...+..++.-...+..+|..|.-|..-
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555566666666666666666655555555444333333444444444444455554444433
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.25 E-value=4.8 Score=36.61 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
.+..|+.|...|..++.++...+..-...+..|+.++..|+-++.++|+...++...|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.16 E-value=1.9 Score=44.34 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.+..++.+.+.++.+++.+.++++...+++..++.|...|+.++++.++++..+.+++..+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34445555666666666666767766667777777777777777777666666665555444
No 32
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.03 E-value=0.29 Score=47.67 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNP 321 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~ 321 (448)
++..++.++..|...|..|++.+.+|+++|..+++++++|..--.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355667777788888888899999999999999999999876543
No 33
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.96 E-value=9 Score=33.66 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+..+..+-..+..++..++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~ 253 (284)
T 1c1g_A 232 LKEAETRAEFAERSVTKLEKSI 253 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 34
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.46 E-value=2.5 Score=39.53 Aligned_cols=56 Identities=23% Similarity=0.267 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+..|+.++..|+..+..|..+|..|.+....++...|.+..-++.+..|+..+=+.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666666666666667777777777776777777777677777776666655433
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.46 E-value=4.3 Score=31.16 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
..+..|..++..|..+|..|+.++..|+..+..+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888999999999999999988887776554
No 36
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.35 E-value=3 Score=34.49 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+...+.++...|+.||..|+++|+.|..++..+...+.
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667778888888888888888877776665543
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.30 E-value=8.4 Score=31.94 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=50.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
|---.+.|..--..-...+.+++.+..+++.+...|.+++..+...+..+...=..+...++.-+.++..+|..|..|..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566667777777777777777777777777766665555555555566666666666666655544
Q ss_pred c
Q 013166 319 L 319 (448)
Q Consensus 319 l 319 (448)
.
T Consensus 94 r 94 (101)
T 3u59_A 94 R 94 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=89.26 E-value=1 Score=34.80 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 274 L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
-..+...+..+...|..+|..|+.++..|+..+..+.+.+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888899999999999999988888776554
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.94 E-value=11 Score=32.63 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+..|+.++..|+..+..|...+.+|.+....|+...|..-.=++.+..|+..|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999888888888887765
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.91 E-value=6.8 Score=40.24 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+.|+..+..++.+.+.+..++...+++..+...+-+.|+.++.+|++++....+.+.++...+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 455566666666666677777777777666667777777888888888888877777776654
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.82 E-value=11 Score=35.35 Aligned_cols=51 Identities=14% Similarity=0.023 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
++..|+.+...|+.....+..++..|+..|.-|......+...+..++...
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kl 139 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRL 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 355555555555555555555555555555555444444444444444333
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.69 E-value=1.2 Score=33.85 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
..+..|+.++..+..+|..|+.++..|+..+..+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888889999988888888887766544
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.66 E-value=4.2 Score=34.45 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
..+..|+.++.....|...|..++..-+.+...++.++..|..+++.|.+-|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777778888888888888887764
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.64 E-value=7.6 Score=33.61 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 240 LSNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 240 lsNRESARRSR~RKq~~LeeLE~qV~~Le~---ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..|-.+|-..=..|+..+++|..++.+++. ...-|+.++......|..-...-..|..+.+.|..+|..+...+.
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344456777777799999999999998888 777799999999888888777777777777777777666654443
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=88.10 E-value=6.4 Score=41.47 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchh
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----------NNRILKADIETLRAKVKMAEETVKRVT-GLNPL 322 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~-----------EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~ 322 (448)
..+.+|..+...|+.+-..|+.+...+..++..+.. +-..|++++.+|..+++.+|+....+. .++.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445455555555555555444444444443321 223566777777777776666555543 33444
Q ss_pred hhhccCCCCCCCCC
Q 013166 323 LLARSDVPGVGMPL 336 (448)
Q Consensus 323 l~~~~~~~~~~~p~ 336 (448)
+..+..++.-..|.
T Consensus 150 l~~iPN~~~~~vP~ 163 (501)
T 1wle_A 150 ALRLPNQTHPDVPV 163 (501)
T ss_dssp HTTSCCCCCTTCCC
T ss_pred HHhCCCCCCCCCCC
Confidence 44444444334444
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.86 E-value=6.7 Score=36.14 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
|-...+..-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+. .+..+|+.|...+..|.......+
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555555666777777778788888877777777666655544 677888888888888777544444
No 47
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.46 E-value=5.4 Score=36.78 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
--|.||++ .+|...+..++..+..|..++..|......|..+...|.+++.
T Consensus 29 ~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 29 AVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554 5666666666666666666666666665556555555554443
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.10 E-value=3 Score=33.56 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999988888777787777766544
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.98 E-value=1.3 Score=35.38 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
.+.+|+.....|..||..|+.++..|
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777776666543
No 50
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=86.95 E-value=2.8 Score=39.75 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
..--.||..|..+|..+...+..|..+|..|+.=++ +++.+.++++||.+
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 344458889999999888888888888888875444 44555666777754
No 51
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.94 E-value=0.68 Score=32.26 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
+..||.+|+.|-.+|..|..++..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55678888888777777777776554
No 52
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.91 E-value=2.3 Score=31.16 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
.+..||.+|..|+.||..|+++.-
T Consensus 4 lvaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcc
Confidence 356788999999999998887753
No 53
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.79 E-value=4.8 Score=33.97 Aligned_cols=78 Identities=13% Similarity=0.152 Sum_probs=59.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le---~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+..|-.+|-..=..|+..+++|...+.+++ ..+.-|..++.....-|..-...-..|..+.+.|..+|..+...+.+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344556777777789999999999888888 67777999999999999888888888888888887777666544444
Q ss_pred H
Q 013166 316 V 316 (448)
Q Consensus 316 l 316 (448)
|
T Consensus 87 L 87 (94)
T 3jsv_C 87 L 87 (94)
T ss_dssp -
T ss_pred H
Confidence 3
No 54
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.53 E-value=6.1 Score=45.21 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=8.2
Q ss_pred cchhHHHHHHhhhhc
Q 013166 34 QSEWELEKFLQEVTV 48 (448)
Q Consensus 34 ~SEW~FerfLeE~~~ 48 (448)
+.-|.|+.|++--..
T Consensus 699 p~R~~~~eF~~RY~~ 713 (1080)
T 2dfs_A 699 PSRWTYQEFFSRYRV 713 (1080)
T ss_dssp CEEEEHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHH
Confidence 334666666665433
No 55
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=86.52 E-value=0.81 Score=30.81 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 283 QKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.-+..++.||..||+.+++|-+|+
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578899999999999997775
No 56
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=86.46 E-value=3.5 Score=31.88 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 239 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (448)
Q Consensus 239 mlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L 274 (448)
.-+||.++|++|.|=++.|+....-...-..||..|
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 468999999999998877766554444434444443
No 57
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.21 E-value=1.2 Score=31.54 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
++..||.+|+.|-.+|+.|..++..|+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678888888777777777776665543
No 58
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.89 E-value=4.2 Score=33.02 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 279 TDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
..+.+++..|..||..|+.+|..|+..+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777666666666555433
No 59
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=85.82 E-value=7.5 Score=39.79 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCC
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV 332 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L-~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~ 332 (448)
..+.+|..+...+..+-..|+.+...+..++... ..+-..|++++.+|..+++.+++....+. .++.++.....++.-
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4455555555555555555555555555443320 11224566666666666666665555543 333444444444433
Q ss_pred CCCC
Q 013166 333 GMPL 336 (448)
Q Consensus 333 ~~p~ 336 (448)
..|.
T Consensus 108 ~vp~ 111 (421)
T 1ses_A 108 GAPV 111 (421)
T ss_dssp TSCS
T ss_pred CCCC
Confidence 4444
No 60
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.82 E-value=5 Score=34.27 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL 324 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~ 324 (448)
.|-++.-.|..++..++.||+.|+......-+++..++..|.||+..|+.|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666777777777666666666677777777776666553
No 61
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.75 E-value=1.8 Score=35.37 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.+++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999888888777787777766544
No 62
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.41 E-value=1.2 Score=31.16 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
++..||.+|..|-.+|+.|..++..|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 466778888877777777766666544
No 63
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=85.09 E-value=12 Score=38.62 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCC
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV 332 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~ 332 (448)
+.+|..+...|+.+-..|+.+...+..++..+.. +-..|++++.+|..+++.+++....+. .++.++..+..++.-
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 112 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 3344444444444444444444444444433221 123456666666666666655554443 233444444444433
Q ss_pred CCCCC
Q 013166 333 GMPLV 337 (448)
Q Consensus 333 ~~p~~ 337 (448)
..|.+
T Consensus 113 ~vP~g 117 (455)
T 2dq0_A 113 SVPVG 117 (455)
T ss_dssp TSCCC
T ss_pred cCCCC
Confidence 44443
No 64
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.06 E-value=7.8 Score=32.07 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
..-.+|..|+.+|..|..++..+.++... .-.......+..||++|..+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~~~--~~~~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcHHHHHHHHHHHHHHHHHH
Confidence 34456777788887777777766654221 11122344445555544443
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.43 E-value=5.4 Score=45.61 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 288 SAVNNRILKADIETLRAKV 306 (448)
Q Consensus 288 L~~EN~~Lkaql~~Lr~kL 306 (448)
+..+...|+.++.+|..++
T Consensus 918 l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 918 LAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 66
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=84.23 E-value=2.9 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
|.++..|+.-|..|..+++.|+..+..++.|+..|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5678888888888888888888888877777766653
No 67
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=83.82 E-value=13 Score=39.00 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.+|..+...|+.+-..|+.+...+..++..+.. +-..|++++.+|..+++.+|+.+..+
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~ 97 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEA 97 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333221 11345555555555555555544443
No 68
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=83.80 E-value=4.2 Score=33.30 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
..--.||..|..++..+...+..+..||+.|+.=+...+.-.
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334458999999999999999999999999876555554433
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.76 E-value=16 Score=29.72 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446677777777777777777766666676666666666666666665443
No 70
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.22 E-value=11 Score=32.51 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql 278 (448)
+|..++..|+.|+..++.++
T Consensus 7 dL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.06 E-value=1.4 Score=33.78 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
..+..|..++..|..+|..|+.++..|+..+..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888899988888888877765543
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.80 E-value=5.7 Score=34.78 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 013166 292 NRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 326 (448)
Q Consensus 292 N~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~ 326 (448)
=..|+-+|..|.++|+.++..|.||+.-|..++..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 44566677777777777888888888888776655
No 73
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=82.64 E-value=1.8 Score=30.70 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
++..||.+|..|..+|+.|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567788888777777777776665554
No 74
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=82.28 E-value=3.3 Score=31.97 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
|.++..|+.-|-+|..++..|+.++...+.|+.+|.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777888888888877777777777666655
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.25 E-value=8.7 Score=31.43 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
+-+|..++..|+.|...|+-+++.+..++..+....+.+-.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444443333
No 76
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.82 E-value=4.7 Score=51.10 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.++..++.+...|..++..|+.+|..+..|-..|+.+++..+.||..|+..+.-|.
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555666666677777777777777788888777777777766655543
No 77
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=81.78 E-value=7.8 Score=33.55 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
.-+++|..++.+|+.||..|++++..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999999999973
No 78
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=81.68 E-value=4.6 Score=29.52 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 279 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 279 ~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.+|..+...++..|..|..++.+|...-.|++..+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 44555555556666666666666666555555443
No 79
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=81.66 E-value=13 Score=31.79 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=9.4
Q ss_pred CchHHHHHHHHHHh
Q 013166 229 DSVDDKRARRMLSN 242 (448)
Q Consensus 229 d~~d~KR~RRmlsN 242 (448)
...++|=+|-|++|
T Consensus 5 ~EvEEKyrKAMVsn 18 (103)
T 4h22_A 5 AEVEEKYKKAMVSN 18 (103)
T ss_dssp ---CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34577888889998
No 80
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=81.65 E-value=7.4 Score=28.82 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.|.-|++++..|.....+|+.+...|..-+..||..+..+|.+|
T Consensus 4 rnaylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 4 RNAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666556666666666666666766666666555
No 81
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.53 E-value=2.2 Score=29.87 Aligned_cols=27 Identities=4% Similarity=0.062 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 466777777777777777766666544
No 82
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.43 E-value=16 Score=34.47 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
..|+.++..++.+...|..++..+..+...+..+=..+++++..++..+..++
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444445555555555554443
No 83
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.13 E-value=8.9 Score=43.87 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 290 VNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 290 ~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.+-..|..++..|+.++..+++.
T Consensus 913 ~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 913 EMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 84
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.05 E-value=4.7 Score=41.06 Aligned_cols=30 Identities=3% Similarity=0.054 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 288 SAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 288 L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+..+++.|++++.+.+.+.+.+..++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 29 TELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333333343333333333333333343343
No 85
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.04 E-value=5.7 Score=32.10 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+|.+-+.++..|+....-=.+-.+.|+-.+-.+..||+.|..++..|.+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34455555566666555555555667777788899999999998888754
No 86
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.95 E-value=16 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
+|=++.+..-..+++.|+.=...|..--..+...+..+..|-..|...++.|+.|.+.++.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677777788888888888888877778888888899999999999999988877664
No 87
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.89 E-value=12 Score=30.52 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.....|+..+..|..+..+|..++..+..-...|.++-.+|..+|+.++
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444443
No 88
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=80.85 E-value=0.14 Score=42.93 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH
Q 013166 231 VDDKRARRMLSNRESARRSRRRKQA 255 (448)
Q Consensus 231 ~d~KR~RRmlsNRESARRSR~RKq~ 255 (448)
.-.|.+||..+||.+|+++|+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3578899999999999999999853
No 89
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.76 E-value=4.1 Score=32.88 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
++|.+||.++..++.-...|...+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~ 38 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALA 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555544444
No 90
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=80.36 E-value=7.9 Score=31.37 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
++||.+|..|+.-...|..++..|..+|. .-...||++|..|..+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Confidence 46788888888777777777776655544 34456888888888777663
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.29 E-value=2.1 Score=33.23 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 275 ~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
...+..|..++..|..+|..|+.++..|+..|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888899999999999887765
No 92
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=80.19 E-value=14 Score=29.91 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
|-...++++...+..|+.+...++..+....+.|..|..=.-.|-.+|.+.|+-|.
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 33456778888888899999999999998889999999888889999999876553
No 93
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.14 E-value=6.9 Score=29.48 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~ 279 (448)
+|..++..|...|..|...+.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~ 33 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK 33 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 94
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.90 E-value=10 Score=40.60 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+|++++..|++++......=++|+..|++++.+++.+|-.|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777776666667888888888888888875444
No 95
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.84 E-value=7 Score=36.68 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~ 287 (448)
|+.-..-|..|..||..|..++....++...
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566666666555555543333333
No 96
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=79.46 E-value=2.8 Score=29.14 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
+..||.+|+.|-.+|..|..++..|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56677777777777777766666544
No 97
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=79.29 E-value=0.81 Score=34.38 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
...|+.+|..|..++..|.+.+.-+|..|.|
T Consensus 26 varlendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3456677777888888887777777766644
No 98
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.24 E-value=16 Score=31.41 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
+..|+.++..|+..+..|...+.++.++|.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666554
No 99
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.97 E-value=2.7 Score=29.39 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888777777777665543
No 100
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.95 E-value=2.4 Score=29.71 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888888888777777765543
No 101
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.87 E-value=2.9 Score=43.00 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
...|...+..|..++..+++++..|..|+..|+.++..|++++..+++.++++...
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555566677777777777777888888888888889988888888888888654
No 102
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.81 E-value=5.6 Score=40.80 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 265 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 265 ~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
..|+.|..+|++++..+.++...+..++..|++++.+...+.+.+..++..+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444445555555555555555555555555555555544444444444444443
No 103
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.73 E-value=23 Score=35.52 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 291 NNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 291 EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.=.+|..++.+|.++|+.++.+|+|++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777877777787765
No 104
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.51 E-value=9.8 Score=33.33 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.|+.+..+-+....+|..+|..|++++..+..|=..||.+.+.|..
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3444333334444555555555555555555555555555555543
No 105
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=78.25 E-value=7.6 Score=29.59 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+.++..++..|+.+...++..+....+.|..|..=.-.|-.+|.+.|+-|
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34667778888888888888888888889888888888999998887554
No 106
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.13 E-value=5.8 Score=40.43 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
++..+++|+.++..|+.+...|..++..+.+++...+..-+.|--++++|+-.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566677777777777777777777777777777776666666666666443
No 107
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=78.11 E-value=15 Score=34.46 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.|..++..|..++.....++..|++++..+..+-+.++.++..-+.-+...+++..-|+|+
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence 3333333333333333333333333333333333334433434334444556666666665
No 108
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.01 E-value=18 Score=31.17 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
..|+.++..|+..+..|...+.++.++|
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444
No 109
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.99 E-value=3.4 Score=31.16 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~ 279 (448)
..|+.|+.||..|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 345555555554444443
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.88 E-value=17 Score=28.98 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
..++.++.++...+..+..+...+..|+.++..++.+=..+..++.....+|..+
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555554444444444444444444444433
No 111
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=77.79 E-value=2.7 Score=29.43 Aligned_cols=27 Identities=7% Similarity=0.299 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
++..||.+|+.|-.+|..|..++..|+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456778888877777777776666554
No 112
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=77.44 E-value=5.7 Score=32.08 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.+|+.++..|+....-+...|..|++....-..+-..|+.++..|..|
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888887777777777766665555555555555555555433
No 113
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.39 E-value=1.8 Score=46.05 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
..+|+.++.+++.|.......|...++....|..+-++...+.+.|.++...||++..||.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999998888888888887777877777777777777777777777766664
No 114
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.09 E-value=9.6 Score=28.25 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+||.+|..|+.-...|..++..|-.+|.. -...||+++..|..+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Confidence 57777777777777777666665544433 344577777666544
No 115
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.00 E-value=43 Score=30.36 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 283 QKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.....+...|..|+.++.+-+..|..++..+..|.
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665554
No 116
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=76.84 E-value=20 Score=27.70 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
|.+-+.+||.++..++.-...+..++..+.-.+..+..++..=+..++.|..|+...+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456677787777777665555555555444444444444433555666666655544
No 117
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=76.81 E-value=3.3 Score=28.82 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
+..||.+|+.|-.+|..|..++..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56677777777777777766665544
No 118
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.80 E-value=4.3 Score=32.38 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
...+..|..++..|+.+++.|+.++..++..+..|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666665554433
No 119
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.78 E-value=34 Score=32.31 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013166 262 TQAGQLRAE 270 (448)
Q Consensus 262 ~qV~~Le~E 270 (448)
.++..|+.+
T Consensus 104 ~~i~~lE~e 112 (256)
T 3na7_A 104 ERSNQANRE 112 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.70 E-value=2.9 Score=33.33 Aligned_cols=9 Identities=22% Similarity=0.582 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 013166 291 NNRILKADI 299 (448)
Q Consensus 291 EN~~Lkaql 299 (448)
+|..|++++
T Consensus 69 ~~~~L~~~l 77 (83)
T 1nkp_B 69 QNALLEQQV 77 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 121
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=76.26 E-value=6.5 Score=40.31 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
..+.+|+.++..|+.++..+..++..+.+++...+.+.+.|--++++|+..
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666666666666666666666666443
No 122
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.99 E-value=3.5 Score=40.20 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.+.+|+.++..|...|..|...+..++
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar 81 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEAR 81 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555555433
No 123
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=75.96 E-value=13 Score=35.64 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
.+...|+-+..|-.+-+ +.+..|+.++++.+.|+.++..++...
T Consensus 161 sde~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~ 204 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQC 204 (228)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567776666554332 233444555555544444444444433
No 124
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.71 E-value=11 Score=28.32 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 278 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+..++.+...|...|..|-.-+.+-|.+|..+.+.|++|.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555566666666666666666666666666654
No 125
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.25 E-value=25 Score=31.82 Aligned_cols=59 Identities=8% Similarity=0.004 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
|..|--.+=.+=-+..+.++.++..|+......-.+.....+....|..+...|..++.
T Consensus 57 nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 57 NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444445444444444444444444444444444444433333
No 126
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.80 E-value=40 Score=28.94 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+.+..+..|......|..++..+..++......|..|.+.-..|...+..++..+.-
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555554444433
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.33 E-value=5.4 Score=30.10 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNR 293 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~ 293 (448)
..|+.++.+|++++..|..++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 128
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.30 E-value=1.8 Score=35.26 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
..|+.+|.+|..+...|+.||..||
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556666554
No 129
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.05 E-value=26 Score=28.82 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013166 295 LKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
-|+++..|+.+|..-+..+.||.
T Consensus 52 TK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 52 TKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Confidence 34777777777777777777764
No 130
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.69 E-value=17 Score=31.55 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+..-+.++..|+.+|..|+.|. ..-+.....+..||..|+.+++.|+..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL-------~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADL-------AEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554 444445567888999999999888544
No 131
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=73.68 E-value=19 Score=28.76 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.+++...+..|+.+...++..+....+.|..|..=.-.|..+|.+.|+-|
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666777777777778888887778888888886544
No 132
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.52 E-value=31 Score=30.37 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L 288 (448)
.+|+.++..|+.+|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777778887777777777777555
No 133
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=73.51 E-value=40 Score=30.43 Aligned_cols=69 Identities=7% Similarity=-0.049 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 013166 256 HLNELETQAGQLRAEHSSLLKGL------------TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 323 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql------------~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l 323 (448)
.+.+|+.+...|+.++..+.... ..+.+.+.........+.+++..|++++..++...+-|...|+|.
T Consensus 34 ~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIs 113 (146)
T 2xnx_M 34 TALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS 113 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 33456666666666665555444 555556666666667777888888888777777777777777654
Q ss_pred h
Q 013166 324 L 324 (448)
Q Consensus 324 ~ 324 (448)
.
T Consensus 114 e 114 (146)
T 2xnx_M 114 D 114 (146)
T ss_dssp -
T ss_pred H
Confidence 3
No 134
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=73.38 E-value=20 Score=29.00 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVN------QKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~------q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|..++.|+.++..|+.+...|..++.+-. .++..+..+-..|..+++.+-.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999998887521 23444455555555555555444
No 135
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.14 E-value=19 Score=36.27 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 269 AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 269 ~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.|-..+.+.....+++...+..||..|+..++++..++..+.+..+-+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 333334444555555666677788888888877777777766555444
No 136
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.03 E-value=30 Score=29.63 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
+.+|...|..|+.|...|+.+...|..
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~ 64 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQN 64 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333333333333333333
No 137
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=72.97 E-value=31 Score=26.80 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 296 KADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 296 kaql~~Lr~kLk~aE~~v~R 315 (448)
|.++.+||+.+..++-.++.
T Consensus 55 k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444555554444444433
No 138
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.94 E-value=32 Score=28.25 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 242 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 242 NRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
|-.||-.+=.|-|+- +..++...+..|..+.++|. ..+..|+.|..+++.|+.++..
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556666655555443 23345555666666665555 5566666666666666666555
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.63 E-value=39 Score=27.80 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSL 274 (448)
Q Consensus 263 qV~~Le~ENs~L 274 (448)
++...+..|..|
T Consensus 46 kL~eae~rn~eL 57 (81)
T 1wt6_A 46 QLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 140
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.45 E-value=19 Score=37.92 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQ-----------KYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q-----------~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+|..+++.|+.+...+.+++..+.. ....|..+=+.|+.++.+|.+++..+++.+..+
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554432 345677788888888888888888887776553
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.04 E-value=27 Score=35.14 Aligned_cols=53 Identities=8% Similarity=-0.025 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.++|.+...++.+......+++.+.++...+.-+...+..++.+-+++++.|.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 33444444455555555555555555555566666666666666666666654
No 142
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.04 E-value=3.6 Score=31.07 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
..+..|..+...|..||..|+.++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888889999999999888654
No 143
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=71.17 E-value=44 Score=27.82 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 247 RRSRRRKQAHLNELE----TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 247 RRSR~RKq~~LeeLE----~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+|.+.+-.-|...=- .+...|+.++..|..++. .|..||..++.++..+++++
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~-------~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVE-------QLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344455444443322 223344444444444443 34445555555555554443
No 144
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=71.15 E-value=21 Score=26.16 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLT 279 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~ 279 (448)
|.+|+.|..+|..+.+
T Consensus 5 vaqlenevaslenene 20 (49)
T 3he5_A 5 VAQLENEVASLENENE 20 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccH
Confidence 4555555544444433
No 145
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=70.75 E-value=4.2 Score=33.10 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
.++.+|+.++.+|+.||.-|+.-.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567778888888888887765543
No 146
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=70.69 E-value=28 Score=32.81 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=10.9
Q ss_pred CCChHHHHHHHHhhh
Q 013166 108 PVDSDEYRAYLKTKL 122 (448)
Q Consensus 108 ~~dp~~y~a~LK~kL 122 (448)
.+..++|-+.|+.=|
T Consensus 60 ~~~~eey~~~l~~aL 74 (213)
T 1ik9_A 60 AMEKGKYVGELRKAL 74 (213)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 466778888887655
No 147
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.64 E-value=5.8 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
..++.+..+..+|..|..|+..
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3333333444445555544443
No 148
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.59 E-value=5.7 Score=38.16 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+.||.+|.++-=.-=-|-|.-|..-++++-.+.+. +..++..+..||+.|+++++.|++++...
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~--------------~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKS--------------SADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHHHHSCC---------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 48899998775444444444444433333333322 22333344444555555555555554443
No 149
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.98 E-value=17 Score=46.36 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 013166 232 DDKRAR--RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK--------------YDESAVNNRIL 295 (448)
Q Consensus 232 d~KR~R--RmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~--------------~~~L~~EN~~L 295 (448)
++||.+ ....+-+.|+.--..+++.|.+|+.+++.|+.+-+.+..+.+.++.+ ...|..|+.+-
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 344443 55666666777777778888888888887777665544444443332 22445566666
Q ss_pred HHHHHHHHHHHHH
Q 013166 296 KADIETLRAKVKM 308 (448)
Q Consensus 296 kaql~~Lr~kLk~ 308 (448)
.+++..|..++..
T Consensus 2090 ~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2090 EQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666555433
No 150
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.75 E-value=59 Score=34.14 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 293 RILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 293 ~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.|+..++.|+.||..+|..+..+
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888877777766543
No 151
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=69.20 E-value=9.2 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
..||.+|.+.+.||-+|.+++..|..
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666666666666655554443
No 152
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=68.94 E-value=10 Score=38.85 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCC
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV 332 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~---EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~ 332 (448)
+.+|..+...++.+-..|+.+...+..++..+.. +-..|++++..|..+++.+++....+. .++.++.....++.-
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 111 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHP 111 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3344444444444444554444444444332210 112344444455555544444444332 233334444444444
Q ss_pred CCCCC
Q 013166 333 GMPLV 337 (448)
Q Consensus 333 ~~p~~ 337 (448)
..|.+
T Consensus 112 ~vp~g 116 (425)
T 2dq3_A 112 SVPVG 116 (425)
T ss_dssp TSCCC
T ss_pred CCCCC
Confidence 55553
No 153
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.91 E-value=30 Score=29.64 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
+..-..|.+|..|+.++.+|+.++......+.++..+|..|+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 334445556777777777777777665555555555554443
No 154
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.79 E-value=41 Score=27.72 Aligned_cols=32 Identities=6% Similarity=0.243 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 275 LKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 275 ~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
...|..|+.++..+..+|..|..++..|+..+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777666666654443
No 155
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.63 E-value=20 Score=29.58 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
.--.||..|..++..+......+..+|..|+
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777777777755554444444444444
No 156
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.01 E-value=19 Score=37.21 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..|..+++.|+.+...+.+++..+.. ....+..+=+.|+.++.+|..+++.+++.+..+
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665432 345677788888888888888888888776654
No 157
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=67.80 E-value=9.3 Score=31.17 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 268 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 268 e~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
..-...|..++..|.-+...+..|+..+++-...|+.|++.+|+..+|+
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr~ 77 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334456677777777777777777777777777888888888777663
No 158
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.69 E-value=52 Score=27.25 Aligned_cols=54 Identities=6% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
.|..++..|+.+...|..+|..+......+..+-...-.+...++.++-..++.
T Consensus 22 ~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555444444444444444444444444444333
No 159
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.42 E-value=52 Score=27.22 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
.+.|.+|+.+-..|..+...+..+...+
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 160
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.20 E-value=31 Score=31.29 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhhhhc
Q 013166 287 ESAVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLAR 326 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~ 326 (448)
....+-..+..++..|+.+++..+..++.+. .+..|-..+
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777777777777766653 334433333
No 161
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.67 E-value=16 Score=31.51 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 013166 283 QKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL 324 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~ 324 (448)
++....+.|...|+.++.+|+++|...+....-+...|+.|+
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 334445555666666666666666555544444443444333
No 162
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=66.65 E-value=81 Score=33.68 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
++.+|.+.++++.|...-.+-+...+++....+.-=..+|..+.+...+|..+...++.+
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 344555555555444443333333333222111112223444444444444444444443
No 163
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=66.29 E-value=11 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 268 RAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 268 e~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
-.||.+|.+.++.-.+++..|..||..|+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35788888888888888888888887765
No 164
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=65.47 E-value=3.9 Score=39.34 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 243 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 243 RESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
||...---....++.+++..++++|+.||+.|..+|..++++..+..
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444444666777888999999999999999998888877755444
No 165
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=65.29 E-value=9.7 Score=26.66 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
++..||.+|+.|-.++..|..++..+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356677777777777776666665544
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=65.23 E-value=27 Score=36.78 Aligned_cols=58 Identities=10% Similarity=0.114 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQ---KYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q---~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.|..+++.|+.+-..+.+++..+.. ....+..+=+.|+.++.+|..++..+++.+..+
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666655433 345688888999999999999999999887554
No 167
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.51 E-value=5.3 Score=30.24 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
+|+.+...+..|..||..|+.++..
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 168
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=64.27 E-value=49 Score=29.09 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
|..+...|..+...+...+..+..++..|..+|..|+..+..++.+...+
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433334444444555555556666666666665555554333
No 169
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=64.08 E-value=58 Score=26.53 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+.+|..|+........-+.++..++..+..|.+.||-+++++..+|..+
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555443333333344555555566666666666666665554443
No 170
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.83 E-value=24 Score=36.35 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.+..|++++..|++++..-...=++|+..|+.++.+++.+|..|
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777666666778888888888877776555
No 171
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.82 E-value=11 Score=26.45 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
.|..+...|..+|..|..++..|+.-
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455556666777777666666543
No 172
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=63.37 E-value=10 Score=30.35 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 237 RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.|+...-..-|+.|.+=...+.+|..-|-.... ...=..-|....+.+..|..++..|+.+.+.|+.+++.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~-k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444456666666656777777776654200 00011123334445566677777777777777665543
No 173
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=63.29 E-value=39 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
|...|..|..|+..|..++..+++.+..+..+
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888877766543
No 174
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.29 E-value=3.4 Score=39.60 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDV 281 (448)
Q Consensus 267 Le~ENs~L~~ql~~l 281 (448)
|..||..|++++..|
T Consensus 24 l~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 24 TYTENQHLKERLEEL 38 (255)
T ss_dssp --CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 175
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=63.25 E-value=48 Score=34.80 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=17.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHh-hcchhhhhccCCCCCCCCC
Q 013166 296 KAD-IETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPL 336 (448)
Q Consensus 296 kaq-l~~Lr~kLk~aE~~v~Rl~-~ln~~l~~~~~~~~~~~p~ 336 (448)
+++ +..|..+++.+++....+. .++.++..+..++.-..|.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 151 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPI 151 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 444 4455555555544444332 2333343334433334444
No 176
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.17 E-value=24 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~ 279 (448)
|...+.+|+.++...+.+...|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 177
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.14 E-value=70 Score=27.20 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSS 273 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~ 273 (448)
|.+|..++..+..+|..
T Consensus 22 I~~LR~qid~~~~e~a~ 38 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKAR 38 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444433333333
No 178
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=62.91 E-value=18 Score=34.47 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+.=.|.|+..|+.+|..|..++..|. ....+|..+-.++..|..+|-.++
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456778888888888888887655 567889999999988887776543
No 179
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=62.38 E-value=12 Score=31.74 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
++..+++++..|..||..|+.++..|..+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777777777776554
No 180
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.36 E-value=7.4 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 278 LTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
|..+...|..+..||..|+.++..|..+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677788889998988888887654
No 181
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=62.23 E-value=27 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.+|+.+|....+-...|+.+++.++..+..|..++..
T Consensus 27 gslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 27 ETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 3344444444444444555555555555555444433
No 182
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=62.18 E-value=60 Score=26.05 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQ-------KYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q-------~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+++|..+|..|...-.++.-.|-+|.+ ++-.+..+--..-+++.+++++|+.+|
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666654 233334444444455556666655544
No 183
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=60.88 E-value=68 Score=29.42 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 274 LLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 274 L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
...++...++.|..+ |..|+.++..|..
T Consensus 184 ae~el~~ak~~ye~l---n~~L~~eLp~l~~ 211 (251)
T 2fic_A 184 AEEELIKAQKVFEEM---NVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 444555555555544 7778887777733
No 184
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=60.87 E-value=63 Score=25.88 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 233 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 233 ~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.|.++.-+-++.. ....|-...+.++...+..|+.+...++..+....+.|..|..=.-.|-.+|.+.|+-|
T Consensus 6 l~~~~~sLE~~l~--e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 6 LKGTNESLERQMR--EMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444443332 33344455678888889999999999999998888899999888888889998887554
No 185
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=60.79 E-value=11 Score=26.81 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIE 300 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~ 300 (448)
+.|-.++.....+...|+.+|+.|..++.
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556667777778877776664
No 186
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.55 E-value=22 Score=28.96 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 284 KYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+..|..+|..|..+++.|+.+...+...+..
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444444433333
No 187
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=59.71 E-value=49 Score=34.89 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
....|+.++..|+++...-...=++|+..|+.++.+++.+|..|+-
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888888887776666688999999999998888866543
No 188
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.53 E-value=96 Score=27.55 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 234 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 234 KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
-|.++.+-||.-+-- ..++.|+.++...+.-...--.++..+.+++..+..+-..-..+++....++..+++.+
T Consensus 37 eR~~k~lE~r~~~de------Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 37 ERGMKVIESRAQKDE------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp THHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665332 34566666666666555555555666666666666666666666666666666666555
Q ss_pred HH
Q 013166 314 KR 315 (448)
Q Consensus 314 ~R 315 (448)
+-
T Consensus 111 ~~ 112 (147)
T 2b9c_A 111 KT 112 (147)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 189
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.23 E-value=35 Score=27.74 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
.+......+..+|..|+.++..|+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333455666666666666653
No 190
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.46 E-value=91 Score=26.97 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
..++.|..+|..|+.+...|..+-. .....|......|.+++.+-+.....|
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~e~r~~~q~a 66 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLAEQQHLRQQA 66 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666644332 223334444445555555544433333
No 191
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.30 E-value=7.9 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 288 SAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 288 L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
|...|..||+++..|.-.+..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 4456666666666665554433
No 192
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=58.18 E-value=60 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
++.|+..|..|...+.++.++|.
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~ 25 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFA 25 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554443
No 193
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=57.74 E-value=11 Score=26.32 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
|..+..+|..+|..|..++..|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444555566666655555543
No 194
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=57.68 E-value=17 Score=28.08 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
+++...|..-|-.|-++++.|...+...|.++.||..|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777766666666666666543
No 195
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=57.65 E-value=61 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+..+=..+++++..++++++.++..++.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555544443
No 196
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.54 E-value=13 Score=30.96 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
..+..+...+..|+.+...++..+....+.|..|..-.-.|..+|.+.|+
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666655556666666544
No 197
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.37 E-value=21 Score=28.52 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
..|+..|+.++..|+.|+..|..++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777777666553
No 198
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=56.98 E-value=45 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
+|...|..|..|+..|..++..+.+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999988888877765
No 199
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=56.48 E-value=56 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|.-+...|..||..|+.-+++=++-.+.+|.+|.++
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555444455566666554
No 200
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.99 E-value=20 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 286 DESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 286 ~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.+|..+|..|..++..|+..|
T Consensus 11 EeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 11 EELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 344444444555555554443
No 201
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.96 E-value=27 Score=34.91 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKMA 309 (448)
Q Consensus 295 Lkaql~~Lr~kLk~a 309 (448)
++.+|.+|..+|..+
T Consensus 38 ~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 202
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=55.71 E-value=48 Score=24.43 Aligned_cols=7 Identities=0% Similarity=0.169 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 013166 296 KADIETL 302 (448)
Q Consensus 296 kaql~~L 302 (448)
+..|..|
T Consensus 46 ~~~I~~~ 52 (60)
T 3htk_A 46 RDEVIKK 52 (60)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 203
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.71 E-value=73 Score=31.83 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=5.6
Q ss_pred ChHHHHHHHH
Q 013166 110 DSDEYRAYLK 119 (448)
Q Consensus 110 dp~~y~a~LK 119 (448)
+++.=..|||
T Consensus 286 ~~eaA~~Fi~ 295 (471)
T 3mq9_A 286 NKELAKEFLE 295 (471)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555556665
No 204
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=55.32 E-value=27 Score=35.64 Aligned_cols=57 Identities=12% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTD-VNQKYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~-l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
+|..+++.|+.+...+.+++.. -.+....+..+=+.|+.++.+|..+++.+++.+..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665542 11334566777778888888888888888777665
No 205
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=55.31 E-value=41 Score=26.95 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 284 KYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+..|..++..|..+++.|+.+...+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 206
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.92 E-value=1e+02 Score=26.41 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+.++...+..|+.+...++..+....+.|..|..=.-.|..+|.+.|+
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666655555666555555555566655543
No 207
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.29 E-value=57 Score=29.02 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
++..|...+.....|...|..++..-..+...++.++..+..++++|.+-|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677777777777766677777778888888888877764
No 208
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=54.11 E-value=93 Score=25.75 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q 283 (448)
++..|+.+|..|..++.++..
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~ 33 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELED 33 (95)
T ss_dssp -----CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 209
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=53.94 E-value=1e+02 Score=26.29 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGL-------TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql-------~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+|+.+...|..+...|..+| .+....+..|......|..++..|..++...++...-|
T Consensus 38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433 33444445555555555555555555555544444333
No 210
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.86 E-value=8.3 Score=25.43 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.|+-||..|.+.+..|.+|+.
T Consensus 4 alefendaleqkiaalkqkia 24 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHH
Confidence 344555555555555555543
No 211
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=53.71 E-value=80 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
.+..+=...+++++.++++|..++...+
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334445556666666665554443
No 212
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=53.37 E-value=37 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
++++..+..-|..|-+++.+|...+...|.++.||..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3455566666777777777777777777766666654
No 213
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.01 E-value=12 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L 288 (448)
+..|+.||..|.+++..|.|++..|
T Consensus 2 idalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHh
Confidence 3467888888888888877776654
No 214
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.91 E-value=20 Score=25.38 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 287 ESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.|..+|..|..++..|+.-|.
T Consensus 12 eLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 12 EIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhc
Confidence 344444445555544444433
No 215
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=52.73 E-value=18 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
+.|..-+..|+.||.+|+.+++++-.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888776543
No 216
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=51.72 E-value=61 Score=34.05 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 289 AVN-NRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 289 ~~E-N~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
..+ -+.|+.++.+|..++..+++.+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 678888888888888888776654
No 217
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.66 E-value=60 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 287 ESAVNNRILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
....||..|..+++.|...+..+..+.+.|.-+-
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655555555555443
No 218
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=50.81 E-value=78 Score=23.89 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
..|+.++..++.-...+..++..+.-....+..++...+..++.|..|+..++
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 33455555544444444444444444444444444444555555555544444
No 219
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=50.66 E-value=58 Score=26.75 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 013166 297 ADIETLRAKVKMAE 310 (448)
Q Consensus 297 aql~~Lr~kLk~aE 310 (448)
+++.+++++|+.++
T Consensus 64 ~~l~~ak~~L~~~e 77 (81)
T 3csx_A 64 RELDQLKKKLNIWE 77 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 220
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=50.55 E-value=21 Score=24.78 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 295 LKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
|..++++|-.+...++++|.|++.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444555443
No 221
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.12 E-value=25 Score=24.59 Aligned_cols=24 Identities=4% Similarity=0.044 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
|..+...|..+|..|..++..|+.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334444555555555555555543
No 222
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.94 E-value=1.4e+02 Score=26.63 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
.+.-+..|...|..|..++.+-.+-...|..-....+.++.+-+.
T Consensus 77 veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~ 121 (152)
T 4fla_A 77 VDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEK 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444444444433333333333333
No 223
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.85 E-value=66 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
|+.++..|..+|-.|..+-+.|.+-+.-+.+++.||
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 333333344444444333333333333333333333
No 224
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=49.49 E-value=73 Score=30.17 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 284 KYDESAVNNRILKADIETLRAKVKMAEETVKR 315 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~R 315 (448)
.+..+..+=...++++..+++++..++..++.
T Consensus 115 ~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~ 146 (341)
T 3fpp_A 115 DLDNAATEMAVKQAQIGTIDAQIKRNQASLDT 146 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455666666666665544443
No 225
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=49.40 E-value=46 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=12.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013166 238 RMLSNRESARRSRRRKQAHLNELETQAG 265 (448)
Q Consensus 238 RmlsNRESARRSR~RKq~~LeeLE~qV~ 265 (448)
|+...-..-||.|.+=...+.+|..-|-
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP 54 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIP 54 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555554555555555433
No 226
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=48.94 E-value=62 Score=24.39 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLK 276 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ 276 (448)
+++|..+|..|..+...|..
T Consensus 6 i~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 227
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=48.88 E-value=14 Score=32.24 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
++..+...|..|++.|+.+++.|+.++...
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666777777777777665443
No 228
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.47 E-value=73 Score=34.19 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred cccccCCCch--HHHHHHHHHHhhHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--
Q 013166 222 TETIEGLDSV--DDKRARRMLSNRESARRSRRRKQ--AHLNE----LETQAGQLRAEHSSLLKGLT-DVNQKYDESAV-- 290 (448)
Q Consensus 222 ~~~~~~~d~~--d~KR~RRmlsNRESARRSR~RKq--~~Lee----LE~qV~~Le~ENs~L~~ql~-~l~q~~~~L~~-- 290 (448)
|++++.|+.. |.+++-..|+|..--= ++.+|. +|+.. |..++.+-. +|.....++. +|++++..|..
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 5556666644 3333333455543322 333332 33333 333333333 5666667777 78887777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 291 NNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 291 EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
+|.+ ++|..||.-|..+...++||.--
T Consensus 127 dnQl--snIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 127 IEKV--QHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 88899999999988888998744
No 229
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=48.43 E-value=1e+02 Score=24.65 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 264 AGQLRAEHSSLLKGLT----DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~----~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
.+.|-.||..|+..+. .+.++|.+|..=-..=|.+-+=|..|.+.|.+.|.||+
T Consensus 10 ~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~ 67 (70)
T 3brv_B 10 LQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLG 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566666555443 34445555655444445666667888888888888875
No 230
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=48.28 E-value=53 Score=29.18 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRA-EHSSLLKGLTDVN 282 (448)
Q Consensus 257 LeeLE~qV~~Le~-ENs~L~~ql~~l~ 282 (448)
++.|+.+++.|+. +...+.+++....
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar 37 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAA 37 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4556666666633 4445555554433
No 231
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.23 E-value=30 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 289 AVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 289 ~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
..+|....++|++|+++...+|++|.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655553
No 232
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.04 E-value=23 Score=28.56 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 272 SSLLKGLTDVNQKYDESAVNNRILKADIETL 302 (448)
Q Consensus 272 s~L~~ql~~l~q~~~~L~~EN~~Lkaql~~L 302 (448)
...-..+..+..++.+...+.+.|+.++.++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555555666666655554
No 233
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.78 E-value=87 Score=23.58 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~ 279 (448)
++.+|..+.+.|..++.
T Consensus 5 ki~~Lss~V~~L~~kVd 21 (52)
T 1jcd_A 5 KADQASSDAQTANAKAD 21 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 234
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.55 E-value=1.1e+02 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
++...+..+..+..+=..+++++..++.+|..++....
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555566666666667777777777777665543
No 235
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.54 E-value=35 Score=23.31 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 289 AVNNRILKADIETLRAKVKMAEETVK 314 (448)
Q Consensus 289 ~~EN~~Lkaql~~Lr~kLk~aE~~v~ 314 (448)
+.+=+.|.+-+++|+.++..+|++|.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666653
No 236
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=47.52 E-value=7.8 Score=37.06 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKG 277 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~q 277 (448)
.|..+.+.|+.||..|+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQL 41 (255)
T ss_dssp ---CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 237
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.40 E-value=1e+02 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLL-------KGLTDVNQKYDES 288 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~-------~ql~~l~q~~~~L 288 (448)
.+|..|+..+..+|..|. ..+.+++.+|..-
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 4444445555543
No 238
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.21 E-value=76 Score=32.68 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 291 NNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 291 EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
+=+.|+..+..++.+|..++..|..|
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 239
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=47.12 E-value=16 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
.|+++|+.++..|+.+...|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999888887776654
No 240
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=46.97 E-value=27 Score=32.56 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
..+.+|..++.+|+.||..|+.+.+...++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665555544443
No 241
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=46.93 E-value=18 Score=28.64 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 248 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 248 RSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+.|.+=...+.+|..-|-.+...-..=..-|......+..|..++..|+.+++.|+++
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333334566777766665432111111223334455667778888888888877653
No 242
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=46.74 E-value=30 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
..+..+|..+|..|..++..|+.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555566666655555543
No 243
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.21 E-value=46 Score=33.30 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 295 LKADIETLRAKVKMAEE 311 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~ 311 (448)
|+.++..++.+|..++.
T Consensus 31 L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 244
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.86 E-value=36 Score=27.54 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIE 300 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~ 300 (448)
+..+..++.+=..+|++++
T Consensus 34 q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 34 RRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 245
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.22 E-value=29 Score=24.30 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETL 302 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~L 302 (448)
...|..+|..|..++..|
T Consensus 10 VEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 10 GEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333444444444444443
No 246
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=44.64 E-value=1.5e+02 Score=25.34 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL 322 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~ 322 (448)
.++...++++.+-..|=+.+-+++++|-.|..-+|.+|.|+..|-.+
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555666677788999999999999999999876544
No 247
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.18 E-value=96 Score=32.90 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRIL---KADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~-~EN~~L---kaql~~Lr~kLk~aE~~v~Rl 316 (448)
+.++..+-..++.||..++++.......|.... .-|..| ++++.+..++|+.-++..+++
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677777777777777766666542 223333 566666667776666555444
No 248
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.16 E-value=17 Score=37.14 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVN---QKYDESAVNNRILKADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~---q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl 316 (448)
.+|..+++.|+.+...+.+++..+. +....+..+=+.|+.++.+|..+++.+++.+..+
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777766542 2344566777888999999999988888777664
No 249
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.53 E-value=21 Score=36.67 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
.+..+...+..|+..|+.+...|+.+++...+.++++..+
T Consensus 36 ~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~ 75 (434)
T 4b4t_M 36 LLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQL 75 (434)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3333444444555555566666666666666666666554
No 250
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=43.49 E-value=64 Score=32.26 Aligned_cols=57 Identities=12% Similarity=0.196 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
|+++|+.+++.|+.+...|..++..-. .-......=+.|..++..+.+++..+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIEKRP-ENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444443332100 001112222345666666666666655443
No 251
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.29 E-value=81 Score=27.89 Aligned_cols=26 Identities=8% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRA-EHSSLLKGLTDVN 282 (448)
Q Consensus 257 LeeLE~qV~~Le~-ENs~L~~ql~~l~ 282 (448)
++.|+.++..|+. +...+...+....
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~ 37 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAR 37 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHH
Confidence 4556666666665 4455555554433
No 252
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.13 E-value=1.2e+02 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
++...|..++..|+.+...|..+++.
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 253
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.10 E-value=1.6e+02 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=1.1
Q ss_pred HHHHHHHhhcchhhh
Q 013166 310 EETVKRVTGLNPLLL 324 (448)
Q Consensus 310 E~~v~Rl~~ln~~l~ 324 (448)
...+.||.+-|..|.
T Consensus 90 ~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 90 SEELVRLQKDNDSLQ 104 (112)
T ss_dssp HTC------------
T ss_pred HHHHHHHHhhccchh
Confidence 333456666666554
No 254
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=42.83 E-value=76 Score=30.06 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 303 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr 303 (448)
+++|+.+.-....+..+|+.....+.+||..|+..+..|+
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 5667777777777777777777777777777777776664
No 255
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.74 E-value=89 Score=23.73 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 280 DVNQKYDESAVNNRILKADIETLRAKVKMAEETV 313 (448)
Q Consensus 280 ~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v 313 (448)
.|-++...|..||..||.+++.=-.+|..+|.+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 3444555667777777777776666666665443
No 256
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=42.69 E-value=96 Score=30.47 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 013166 278 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLL 323 (448)
Q Consensus 278 l~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l 323 (448)
+..+..++..+..+=+.+...++++..+++.+|..|.|+..|-.|+
T Consensus 218 ~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (268)
T 2yo3_A 218 MGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLH 263 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344444444445555555666677777788888888887765443
No 257
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=42.42 E-value=1.5e+02 Score=28.55 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 013166 233 DKRARRMLSNRESA-RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK-VKMA 309 (448)
Q Consensus 233 ~KR~RRmlsNRESA-RRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k-Lk~a 309 (448)
-|-.=.-++|||.. +.+|.||+.-..++ ..|+... --..++..|++++..++.+|-+..+++..+.++ ++.+
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I----~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa 165 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEI----AHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAA 165 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHH
Confidence 33344568888876 55666665544433 3344321 123577888999999999998888888776543 4443
No 258
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=42.29 E-value=41 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 283 QKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
.+.+.|...|-.-++.++.||.|+
T Consensus 8 krvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 8 KRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc
Confidence 334455556666666666676654
No 259
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.16 E-value=1.9e+02 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhh
Q 013166 298 DIETLRAKVKMAEETVKRVTGLNPLL 323 (448)
Q Consensus 298 ql~~Lr~kLk~aE~~v~Rl~~ln~~l 323 (448)
.+.+|.+-|+....+|..|+..--+|
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~L 124 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGIL 124 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHH
Confidence 45566677888888888888765444
No 260
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.95 E-value=32 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
|.....+.+.||-.|.+++..|...
T Consensus 6 lekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444556788999998888888654
No 261
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=41.93 E-value=51 Score=27.11 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 285 YDESAVNNRILKADIETLRA 304 (448)
Q Consensus 285 ~~~L~~EN~~Lkaql~~Lr~ 304 (448)
...++..|+.|.-.+++|..
T Consensus 58 ~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 58 QKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHH
Confidence 34556666666666666643
No 262
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.21 E-value=50 Score=32.44 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 261 ETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 261 E~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
+.+++.|+.+|+.|..+++.|++....+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445666666666666666666555444443
No 263
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=40.63 E-value=1.7e+02 Score=25.06 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
-|++|+.++...+.+...-+++|.+.++.|
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555444445554444433
No 264
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=40.39 E-value=43 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
..+..+|..+|..|..++..|+.-
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334445555666666666555443
No 265
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.23 E-value=1.1e+02 Score=22.48 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql 278 (448)
.+++.++..++.+-..+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~k~~~ 35 (60)
T 3htk_A 15 EELTEKCSLKTDEFLKAKEKI 35 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 266
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=39.73 E-value=88 Score=25.75 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013166 293 RILKADIETLRAKVKMA 309 (448)
Q Consensus 293 ~~Lkaql~~Lr~kLk~a 309 (448)
+.-+.++..|..+++.+
T Consensus 91 Rir~~q~~~L~~kf~e~ 107 (127)
T 1ez3_A 91 RIRKTQHSTLSRKFVEV 107 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555443
No 267
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.66 E-value=84 Score=22.93 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
|.|++..+..|=..-++++.+|+.|++.+|+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555666677777777776654
No 268
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.54 E-value=1.2e+02 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
.+++.+++.+...|+..|..|..++.+|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35667778888888888888888887776543
No 269
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.11 E-value=41 Score=27.77 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013166 287 ESAVNNRILKADIETLRAKVKMAEETVKRVTGL 319 (448)
Q Consensus 287 ~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~l 319 (448)
....||..|..+++.++..+..+..+..+|..+
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555555555444444444
No 270
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=39.10 E-value=30 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.281 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 281 VNQKYDESAVNNRILKADIETLRA 304 (448)
Q Consensus 281 l~q~~~~L~~EN~~Lkaql~~Lr~ 304 (448)
|..+...|..+|..|..++..|+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 344444555666666666655543
No 271
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.49 E-value=2.3e+02 Score=25.86 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 284 KYDESAVNNRILKADIETLR 303 (448)
Q Consensus 284 ~~~~L~~EN~~Lkaql~~Lr 303 (448)
++..+..|-..|++++...|
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543
No 272
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.34 E-value=43 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.+|..++..|+.+...|..+... +..+.+.|+.++..++.+++.+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~-------l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY-------IKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444333 3334444555555566655554
No 273
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.26 E-value=29 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 276 KGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 276 ~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+++..+..-+.+-++.|..|-.++.-|...
T Consensus 29 k~~~Hl~~LL~EsEatnarL~eq~~lLK~E 58 (71)
T 3bbp_D 29 KSADHLNGLLRETEATNAILMEQIKLLKSE 58 (71)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 333344444444445555544444444333
No 274
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.63 E-value=3.6e+02 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
..+|+++-.+|+.+..+...|.+.+.+.
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555544443
No 275
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.52 E-value=78 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~~ 280 (448)
|..++..|+.|...|+-++..
T Consensus 7 lkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333
No 276
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=37.22 E-value=2.1e+02 Score=30.46 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 262 TQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 262 ~qV~~Le~ENs~L~~ql~ 279 (448)
..|..++.+|..+..++.
T Consensus 34 ~~~ae~~a~n~~i~aeNe 51 (497)
T 3iox_A 34 AAVAANNAANAALTAENT 51 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 333333333333333333
No 277
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.16 E-value=28 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 282 NQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 282 ~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
.++...+..+|+.|+.++++|++++..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666554433
No 278
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=37.15 E-value=2 Score=36.91 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 270 EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 270 ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
+...|..++..|.++...|..||..|+.++..|+.++..+.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666777788888877777766655544
No 279
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.87 E-value=1.6e+02 Score=27.69 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.8
Q ss_pred cccCCCchHHH
Q 013166 224 TIEGLDSVDDK 234 (448)
Q Consensus 224 ~~~~~d~~d~K 234 (448)
.+..+|..+.+
T Consensus 58 ~L~~ld~~~~~ 68 (341)
T 3fpp_A 58 LLGVIDPEQAE 68 (341)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEEChHHHH
Confidence 44556665543
No 280
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=36.84 E-value=2.7e+02 Score=26.08 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 250 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL--KADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 250 R~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~L--kaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
+.||.+-++-|..++..|+.|-..|..++..-..--..+.+--..+ -.+.+..+..+..++..|.-|.+|+
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs 86 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLS 86 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888777776654333322332222222 2344555555666666666555544
No 281
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.57 E-value=1.9e+02 Score=24.32 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
+..+..|+.-+.--+.-...|.++-..|..-+..+..||..-...+.+|++|+..+
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 282
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.42 E-value=2.1e+02 Score=30.60 Aligned_cols=12 Identities=0% Similarity=0.324 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 013166 306 VKMAEETVKRVT 317 (448)
Q Consensus 306 Lk~aE~~v~Rl~ 317 (448)
.+.+..++..|.
T Consensus 569 ~~~~~~ei~~l~ 580 (592)
T 1f5n_A 569 SRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 283
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=35.78 E-value=1.3e+02 Score=28.49 Aligned_cols=33 Identities=6% Similarity=-0.105 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 296 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk 296 (448)
+-....||-.|..+...+++++.-...=-++|.
T Consensus 124 Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLD 156 (214)
T 2cly_A 124 LFDVQRNNIAMALEVTYRERLHRVYREVKNRLD 156 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666655555544444453
No 284
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.64 E-value=2e+02 Score=24.35 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA 309 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~a 309 (448)
.|+....+|..+|..|...-=.++..-..-.-+|.+|+.++..+
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555566666666555544444444444445666666555443
No 285
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.32 E-value=92 Score=28.48 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 293 RILKADIETLRAKVK 307 (448)
Q Consensus 293 ~~Lkaql~~Lr~kLk 307 (448)
+.|-.++.+||.++.
T Consensus 116 ~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 116 NAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555566655543
No 286
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.05 E-value=1.7e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
+.|+.++..|+.+-..|..++..+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443
No 287
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.56 E-value=32 Score=27.12 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLK 276 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ 276 (448)
..|+..|+.++..|+.++..|++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555544
No 288
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=34.27 E-value=0.8 Score=38.37 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQ 254 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq 254 (448)
-.+..||.-+||.+|+++|+||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 46778899999999999999985
No 289
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=33.24 E-value=1.6e+02 Score=28.08 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 267 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 267 Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
|......++.++..+++++.....|++.+++++++-|+.+..+++..+|+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444555666777777777888999999999999999999988888864
No 290
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.13 E-value=58 Score=22.78 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 298 DIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 298 ql~~Lr~kLk~aE~~v~Rl 316 (448)
++++|-.+...++++|.||
T Consensus 9 KvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3333333333444444444
No 291
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.73 E-value=2.4e+02 Score=24.38 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 297 ADIETLRAKVKMAEE 311 (448)
Q Consensus 297 aql~~Lr~kLk~aE~ 311 (448)
..+..|+.||..+..
T Consensus 69 ~~Vs~lq~KiaeLKr 83 (113)
T 4fi5_A 69 GVAVSIQAKIDELKR 83 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 292
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=32.28 E-value=2.1e+02 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 296 KADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 296 kaql~~Lr~kLk~aE~~v~Rl 316 (448)
++++..|..++.+.-++-.|+
T Consensus 68 raDL~~l~r~~av~g~E~RRI 88 (90)
T 4b6x_A 68 RADLADLQRRFAVLRNEDRRI 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhc
Confidence 566777777777765554454
No 293
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=32.19 E-value=84 Score=27.16 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLL 275 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~ 275 (448)
.+.+|+.+|+.++..|..|+
T Consensus 5 e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444443
No 294
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.04 E-value=2.5e+02 Score=24.23 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 263 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV 306 (448)
Q Consensus 263 qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kL 306 (448)
+|..|+.+..-.+.-+..=+.--..+..|...|..+++.|.+++
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 35555555555555444444444455566666666666666654
No 295
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=31.69 E-value=95 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN 292 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN 292 (448)
.+.+++..++..|+.|..-...+|.++.-.++..+.++
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~ 53 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENEGEN 53 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 35566666666666666666666666555555444443
No 296
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=31.55 E-value=1.5e+02 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.136 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
+.|+.++.....+...+.+.+..
T Consensus 13 ~~L~~el~~~~~~r~~~~~~i~~ 35 (156)
T 2f23_A 13 ERLMQQLERERERLQEATKILQE 35 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433344444444433
No 297
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=31.28 E-value=2.3e+02 Score=24.68 Aligned_cols=11 Identities=0% Similarity=0.178 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 013166 306 VKMAEETVKRV 316 (448)
Q Consensus 306 Lk~aE~~v~Rl 316 (448)
++..+.+|+..
T Consensus 91 I~~qe~iI~nF 101 (119)
T 2avr_X 91 MEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 298
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.21 E-value=4.4e+02 Score=27.18 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 274 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 274 L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
+..++..++..+......-++|+..+...+.++..+++.|..|.
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334445555555555555555555555554
No 299
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.14 E-value=38 Score=22.29 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013166 267 LRAEHSSLLKGLTDV 281 (448)
Q Consensus 267 Le~ENs~L~~ql~~l 281 (448)
|+..|..|++++..|
T Consensus 5 lkqknarlkqeiaal 19 (28)
T 3ra3_B 5 LKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHH
Confidence 344444444444433
No 300
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.12 E-value=1.1e+02 Score=27.25 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013166 291 NNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 291 EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+-..+..++..|+++++..+..
T Consensus 97 ~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 97 EKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555444433
No 301
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=30.83 E-value=26 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSL 274 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L 274 (448)
..|+++||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888887665544
No 302
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.57 E-value=1.2e+02 Score=27.47 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 237 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK 284 (448)
Q Consensus 237 RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~ 284 (448)
+++..-|.-.+.+-++|++||.+|..|...++ .|..++..+.++
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk----nLv~RN~~~e~~ 51 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFK----NLVQRNRHAEQQ 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
No 303
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=30.50 E-value=1.1e+02 Score=20.79 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
..|..+|+.|+..|-.-+++++.|+.++
T Consensus 4 qalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4556666677776666666666665543
No 304
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.36 E-value=91 Score=24.65 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 251 RRKQAHLNELETQAGQLRAEHSSLLKGLTDV 281 (448)
Q Consensus 251 ~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l 281 (448)
..|...+.+||..+..-..|+..|+.++..+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777666666666665543
No 305
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.30 E-value=2.5e+02 Score=23.79 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 249 SRRRKQAHLNELE------T-QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 249 SR~RKq~~LeeLE------~-qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
-|..|+.+|.+-- . -.+.|+.-..+|..+|..|...-=.++..-..-.-+|.+|+.++..
T Consensus 22 e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 22 ARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp HHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 3445666666511 0 1234566666666666665555444444444444566666655443
No 306
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=30.30 E-value=29 Score=36.92 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 013166 232 DDKRARRMLSN 242 (448)
Q Consensus 232 d~KR~RRmlsN 242 (448)
++|-+|.+.++
T Consensus 311 e~~~~~~~e~~ 321 (575)
T 2i1j_A 311 EEKLAKQAQRE 321 (575)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 307
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=29.95 E-value=3.3e+02 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=8.3
Q ss_pred HHHHHHHHhhhh
Q 013166 112 DEYRAYLKTKLD 123 (448)
Q Consensus 112 ~~y~a~LK~kLd 123 (448)
.+|..|||.|-.
T Consensus 24 ~el~~f~keRa~ 35 (301)
T 2efk_A 24 DRYVKFVKERTE 35 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 477888877644
No 308
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.79 E-value=3.3e+02 Score=25.03 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=19.9
Q ss_pred cccccCCCchHHHHHHHHHHhhHHH
Q 013166 222 TETIEGLDSVDDKRARRMLSNRESA 246 (448)
Q Consensus 222 ~~~~~~~d~~d~KR~RRmlsNRESA 246 (448)
++.+..-+|.|.+..-|++++....
T Consensus 39 ~eLirs~~PeDL~~AN~LiK~m~~~ 63 (186)
T 1oxz_A 39 ARLLKSSHPEDLRAANKLIKEMVQE 63 (186)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhhHHHHHHHHHHHhcc
Confidence 4567778899999999999887654
No 309
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.30 E-value=2.2e+02 Score=22.89 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 264 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 301 (448)
Q Consensus 264 V~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~ 301 (448)
+..++..-..++.++..=......++++=..||..+..
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333333344444443333334444444445544433
No 310
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=29.27 E-value=2.2e+02 Score=22.82 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE 310 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE 310 (448)
.||..++..-+.|...|..-+..++.++-.-..=|+.|..+...++.....++
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56777777777777777777777777776666777777777766666655554
No 311
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.20 E-value=1.1e+02 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~ 279 (448)
.|..+|..|+.||..|.+-++
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777666554
No 312
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.92 E-value=1.1e+02 Score=28.44 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
+.++-|-.++..|+.+|..|.++++.|+++.+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777788777777777666655554443
No 313
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.78 E-value=2.4e+02 Score=23.10 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET 312 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~ 312 (448)
+|-.+|..|+.....|-.+-.....++..-..|=..|+.+++.-.+.++.+.+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333444444333333333333333333344455555666666555555555443
No 314
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.40 E-value=2.4e+02 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVN 282 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~ 282 (448)
.++|.+-..|+.....|..++...+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444443333
No 315
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=28.39 E-value=2.7e+02 Score=26.81 Aligned_cols=43 Identities=7% Similarity=-0.007 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQK-YDESAVNNRILKA 297 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~-~~~L~~EN~~Lka 297 (448)
+.+.+|+.+++.|+.+...+..++..+..+ ...|..-...|+.
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655554 3334443333433
No 316
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=28.24 E-value=2.1e+02 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 292 NRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 292 N~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.-.||.+.+-|..-..|.-+...||..
T Consensus 45 ey~iKkq~evl~Et~~mipd~~~Rl~~ 71 (106)
T 1qsd_A 45 PYDLKKQEEVLDDTKRLLPTLYEKIRE 71 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456777777777777777666666643
No 317
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.40 E-value=1.2e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 244 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 244 ESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
|-|-||=.|-++.+++||.++..-+.++..+..++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eL 42 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEEL 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555444444444443333
No 318
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.10 E-value=1.3e+02 Score=26.01 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQKYDE 287 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q~~~~ 287 (448)
+|..+|..|..|+..|.+++..+++++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666655555443
No 319
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=26.72 E-value=14 Score=31.27 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILK----ADIETLRAKVKMAEETVKRV 316 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lk----aql~~Lr~kLk~aE~~v~Rl 316 (448)
.+..|.-.|.++++.|.-++..+..||..|| .+-.-|..||.-....++||
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL~~~kk~ie~l 94 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKLSSKDAFIDDL 94 (95)
T ss_dssp -------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666777777766777777777774 33344455555555555544
No 320
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=26.71 E-value=51 Score=35.07 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 241 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 274 (448)
Q Consensus 241 sNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L 274 (448)
+.|..++|-|+|++.-|+..++.+..+..++-.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (573)
T 3ppm_A 30 KARGAATRARQKQRASLETMDKAVQRFRLQNPDL 63 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3445566777778888899999999888775443
No 321
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=26.70 E-value=4e+02 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQ 266 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~ 266 (448)
...+.-+.+..|+.|-|.-.++++.++.|-.+...
T Consensus 101 ~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~r 135 (235)
T 2odv_A 101 EWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788899999999999999888888776653
No 322
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=26.68 E-value=4.3e+02 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013166 277 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG 318 (448)
Q Consensus 277 ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~~v~Rl~~ 318 (448)
.|..+.-++...+.+=..|+.++..|..+|...|..+.-|..
T Consensus 106 ~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 106 AITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 334444444455555666788888888888888877777654
No 323
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.61 E-value=4.9e+02 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQAGQ 266 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~qV~~ 266 (448)
+++-=..|++.++.|+..+..
T Consensus 321 ~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 321 ATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554443
No 324
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=26.40 E-value=2e+02 Score=26.19 Aligned_cols=24 Identities=8% Similarity=0.248 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Q 013166 293 RILKADIETLRAK-VKMAEETVKRV 316 (448)
Q Consensus 293 ~~Lkaql~~Lr~k-Lk~aE~~v~Rl 316 (448)
..+...+.+|.++ +...|.+|.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~e~~~~~~ 177 (202)
T 2p4w_A 153 ILIETYIENTMRRLAEENRQIIEEI 177 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 22234555554
No 325
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.20 E-value=90 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 289 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~ 289 (448)
.-..||.-|..|+..|..|.+.+..|...+..|+
T Consensus 18 enaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 3356777788888888888888877665554443
No 326
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.17 E-value=57 Score=28.92 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 289 AVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 289 ~~EN~~Lkaql~~Lr~kLk~ 308 (448)
...|..|+-+++.|++.|+|
T Consensus 54 ~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 54 SVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666
No 327
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.76 E-value=67 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013166 294 ILKADIETLRAKVKMAEETVKRVTGLN 320 (448)
Q Consensus 294 ~Lkaql~~Lr~kLk~aE~~v~Rl~~ln 320 (448)
.|++++..|++++..+++.+++|.+.-
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666666677777777788887653
No 328
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.53 E-value=2.3e+02 Score=21.72 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV 290 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~ 290 (448)
+++|...+..-..+....+.++.+++..+..|..
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444444444433444444444444433333
No 329
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.77 E-value=3.2e+02 Score=24.55 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=19.8
Q ss_pred cccccCCCchHHHHHHHHHHhhHHH
Q 013166 222 TETIEGLDSVDDKRARRMLSNRESA 246 (448)
Q Consensus 222 ~~~~~~~d~~d~KR~RRmlsNRESA 246 (448)
++.+..-+|.|.+..-|++++...-
T Consensus 23 ~~Lirs~~PeDL~~AN~LiK~m~~~ 47 (158)
T 1naf_A 23 ARLLKSSHPEDLRAANKLIKEMVQE 47 (158)
T ss_dssp HHHHSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChhhHHHHHHHHHHHhcc
Confidence 3566778899999999999987653
No 330
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.71 E-value=3.8e+02 Score=24.00 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 254 QAHLNELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 254 q~~LeeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
..-+.+|+.++.++..|.+.|..+...
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr 54 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQT 54 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 331
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.68 E-value=1.2e+02 Score=20.32 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTD 280 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~ 280 (448)
+.||.+...|+...+.|.++++.
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443
No 332
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.60 E-value=2.7e+02 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql 278 (448)
++.++..|..+...|.+++
T Consensus 47 ~~~~i~~l~~~i~~~~~~~ 65 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKL 65 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 333
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=23.93 E-value=2.5e+02 Score=23.67 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013166 293 RILKADIETLRAKVKMAEETVKRVT 317 (448)
Q Consensus 293 ~~Lkaql~~Lr~kLk~aE~~v~Rl~ 317 (448)
..||.+.+-|..-..|.-+...||.
T Consensus 48 y~iKkq~evl~Et~~mipd~~~Rl~ 72 (108)
T 1h7c_A 48 YDIKKQAEILQESRMMIPDCQRRLE 72 (108)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3566666666666566555555554
No 334
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.64 E-value=2.6e+02 Score=21.80 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 273 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE 311 (448)
Q Consensus 273 ~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~aE~ 311 (448)
++++.+.....+++.|..-|..|..++..|+.++..+..
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 445555556666667777777777777777777665543
No 335
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.46 E-value=1.6e+02 Score=20.03 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 259 ELETQAGQLRAEHSSLLKGLTDVNQ 283 (448)
Q Consensus 259 eLE~qV~~Le~ENs~L~~ql~~l~q 283 (448)
.||..+..|..-.++|.+++..|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666655443
No 336
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.02 E-value=3.4e+02 Score=22.83 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013166 270 EHSSLLKGLTD 280 (448)
Q Consensus 270 ENs~L~~ql~~ 280 (448)
+...+..+|.+
T Consensus 48 ~~~~ie~ElEe 58 (97)
T 2eqb_B 48 EADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 337
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.84 E-value=2.9e+02 Score=23.66 Aligned_cols=7 Identities=14% Similarity=-0.206 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 013166 232 DDKRARR 238 (448)
Q Consensus 232 d~KR~RR 238 (448)
+..+.+.
T Consensus 45 dl~~l~~ 51 (142)
T 3gp4_A 45 DLRWILF 51 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 338
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=22.50 E-value=2e+02 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCCCCCCCCC
Q 013166 295 LKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLV 337 (448)
Q Consensus 295 Lkaql~~Lr~kLk~aE~~v~Rl~~ln~~l~~~~~~~~~~~p~~ 337 (448)
|+.++.+|..++..+++.+.. +|..+..++.-+.|.+
T Consensus 110 ~~~~i~~~e~~~~~~~~~~~~------~l~~iPN~~~~~vP~g 146 (522)
T 3vbb_A 110 IDEAILKCDAERIKLEAERFE------NLREIGNLLHPSVPIS 146 (522)
T ss_dssp HHHSCCCCHHHHHHHHHHHHH------HGGGSCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhCCCCCCCCCCCC
Confidence 445555566666655554433 3333444444445543
No 339
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.49 E-value=3.5e+02 Score=22.79 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 257 LNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 257 LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
|++|+.++...+.+...-+++|.+..+.|
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666655555555555555443
No 340
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.39 E-value=4.3e+02 Score=23.74 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 013166 304 AKVKMAEETVKRV 316 (448)
Q Consensus 304 ~kLk~aE~~v~Rl 316 (448)
.++.-++..|.||
T Consensus 140 ~~~~~~~~~~~~~ 152 (155)
T 2efr_A 140 SKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh
Confidence 3333334444443
No 341
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.79 E-value=4.4e+02 Score=23.66 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013166 266 QLRAEHSSLL 275 (448)
Q Consensus 266 ~Le~ENs~L~ 275 (448)
.|+.|+..+.
T Consensus 64 ~Lrae~~~~Q 73 (167)
T 4gkw_A 64 KLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 342
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.77 E-value=2.3e+02 Score=22.83 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 291 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~E 291 (448)
+..-+..|+.+++.++.+...|..++..+..++..+..+
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 343
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.49 E-value=64 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013166 260 LETQAGQLRAEHSSLLKGLT 279 (448)
Q Consensus 260 LE~qV~~Le~ENs~L~~ql~ 279 (448)
.-.+|..|+.+|..|..++.
T Consensus 18 yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678888999988888764
No 344
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.35 E-value=6.8e+02 Score=27.16 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 253 KQAHLNELETQAGQLRAEHS---------------SLLKGLTDVNQKYDESAVNNRILKA 297 (448)
Q Consensus 253 Kq~~LeeLE~qV~~Le~ENs---------------~L~~ql~~l~q~~~~L~~EN~~Lka 297 (448)
+-..+++|+.++.+|+.|.. .|.+++..+++++..+...+..-+.
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERERE 458 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777766665533 3445555555555555544443333
No 345
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=21.26 E-value=40 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 013166 252 RKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDES 288 (448)
Q Consensus 252 RKq~~LeeLE~qV~~Le~---ENs~L~~ql~~l~q~~~~L 288 (448)
.|+..+++|..++.+++. .+.-|+.++.....-|..-
T Consensus 35 ~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aE 74 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE 74 (96)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356666666666655552 3333444444444444433
No 346
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.08 E-value=1.3e+02 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 013166 298 DIETLRAKVKMAEETV 313 (448)
Q Consensus 298 ql~~Lr~kLk~aE~~v 313 (448)
++.+|.-.+..+.++|
T Consensus 8 evgelkgevralkdev 23 (27)
T 3v86_A 8 EVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3333333333333333
No 347
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.84 E-value=4.9e+02 Score=23.82 Aligned_cols=12 Identities=17% Similarity=0.639 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhh
Q 013166 112 DEYRAYLKTKLD 123 (448)
Q Consensus 112 ~~y~a~LK~kLd 123 (448)
.+|..|||.|-.
T Consensus 31 ~el~~f~~eRa~ 42 (305)
T 2efl_A 31 EKYIKFVKERTE 42 (305)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788876644
No 348
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.81 E-value=3.4e+02 Score=22.04 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 256 HLNELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 256 ~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
-|++|+.++...+.+...-+++|.+..+.|
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666555555555555554443
No 349
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.60 E-value=7e+02 Score=25.68 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 266 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK 307 (448)
Q Consensus 266 ~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk 307 (448)
.|+....-|+.++..-.+.+..|...=+.++.+|..|...+.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444555555544555555555555543
No 350
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=20.60 E-value=52 Score=28.44 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013166 283 QKYDESAVNNRILKADIE 300 (448)
Q Consensus 283 q~~~~L~~EN~~Lkaql~ 300 (448)
.++..|..||+.||.++.
T Consensus 15 aeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 15 KEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445555555555543
No 351
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.53 E-value=3.2e+02 Score=25.18 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 246 ARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 278 (448)
Q Consensus 246 ARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql 278 (448)
|-|+-.+.++.++.||.++...+.++..+..++
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555544443
No 352
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=20.46 E-value=3.1e+02 Score=22.81 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 258 NELETQAGQLRAEHSSLLKGLTDVNQKY 285 (448)
Q Consensus 258 eeLE~qV~~Le~ENs~L~~ql~~l~q~~ 285 (448)
++.|.++..--.|...++..+-+|.+.+
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h 66 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTH 66 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667666655555555555555444333
No 353
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.40 E-value=3.1e+02 Score=21.35 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 013166 295 LKADIETLRAK 305 (448)
Q Consensus 295 Lkaql~~Lr~k 305 (448)
|+.++..|+.+
T Consensus 83 i~~~l~~l~~r 93 (118)
T 3uul_A 83 IQEQMTLLNAR 93 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 354
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.38 E-value=4.2e+02 Score=22.95 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 232 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM 308 (448)
Q Consensus 232 d~KR~RRmlsNRESARRSR~RKq~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~kLk~ 308 (448)
|.-|+|++.-+ .-+.--.+|++-..|+|.++++++.+...+.+++ +.+=..-+.+++.++.+|.|
T Consensus 40 ELeRLr~~~d~--~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~----------ese~~~kkK~le~~~~kV~m 104 (115)
T 3vem_A 40 ELEKLRRESEN--SKKTFEEKKSILKAELERKMAEVQAEFRRKFHEV----------EAEHNTRTTKIEKDKNLVIM 104 (115)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 45566654322 1122234455555666666666555554444333 34444445666666666544
No 355
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=20.36 E-value=1.8e+02 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 255 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD 286 (448)
Q Consensus 255 ~~LeeLE~qV~~Le~ENs~L~~ql~~l~q~~~ 286 (448)
+.+.+|...|..|+.|..-...+|.++.--++
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ 39 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQ 39 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666554333
No 356
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.26 E-value=2e+02 Score=24.76 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 013166 232 DDKRARRM 239 (448)
Q Consensus 232 d~KR~RRm 239 (448)
+..+.+.+
T Consensus 59 dl~~l~~I 66 (148)
T 3gpv_A 59 ALKYLEMI 66 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 357
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.11 E-value=2e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013166 271 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK 305 (448)
Q Consensus 271 Ns~L~~ql~~l~q~~~~L~~EN~~Lkaql~~Lr~k 305 (448)
+..|.+++...+++...|..+...|+..++.|.+.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!