Your job contains 1 sequence.
>013167
MSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRC
SGCDRVELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGD
IAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIG
KAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPS
PPLDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQ
TPNEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQ
KSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELH
DLPKQGLGNRNPQLRPGNYNRHWANGRR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013167
(448 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156814 - symbol:AT5G05140 species:3702 "Arabi... 992 5.6e-100 1
TAIR|locus:2178173 - symbol:AT5G09850 species:3702 "Arabi... 257 8.7e-34 2
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 157 1.5e-08 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 148 1.5e-07 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 147 2.0e-07 1
UNIPROTKB|Q5DR83 - symbol:TCEA3 "Rhabdomyosarcoma antigen... 124 4.2e-07 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 143 5.7e-07 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 143 5.7e-07 1
UNIPROTKB|E2R638 - symbol:TCEA3 "Uncharacterized protein"... 122 6.9e-07 1
UNIPROTKB|I3LP05 - symbol:TCEA3 "Uncharacterized protein"... 103 7.9e-07 2
UNIPROTKB|Q5JRI8 - symbol:TCEA2 "Transcription elongation... 113 6.5e-06 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 133 1.0e-05 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 128 2.1e-05 1
UNIPROTKB|F6X6Y7 - symbol:TCEA3 "Uncharacterized protein"... 126 2.5e-05 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 126 4.5e-05 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 125 4.7e-05 1
UNIPROTKB|A5PKE4 - symbol:TCEANC2 "Transcription elongati... 120 5.1e-05 1
UNIPROTKB|F1MBR2 - symbol:TCEANC2 "Transcription elongati... 120 5.1e-05 1
UNIPROTKB|Q96MN5 - symbol:TCEANC2 "Transcription elongati... 120 5.1e-05 1
UNIPROTKB|E5RIS7 - symbol:TCEA1 "Transcription elongation... 104 6.1e-05 1
UNIPROTKB|I3LKH0 - symbol:TCEANC2 "Uncharacterized protei... 118 9.0e-05 1
UNIPROTKB|I3LRU2 - symbol:TCEB3 "Uncharacterized protein"... 114 0.00013 2
UNIPROTKB|F1P1E3 - symbol:TCEB3 "Uncharacterized protein"... 116 0.00023 2
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 118 0.00026 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 118 0.00026 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 118 0.00026 1
UNIPROTKB|E5RJ93 - symbol:TCEA1 "Transcription elongation... 98 0.00027 1
UNIPROTKB|G3N2S6 - symbol:TCEB3 "Uncharacterized protein"... 120 0.00030 3
UNIPROTKB|Q14241 - symbol:TCEB3 "Transcription elongation... 116 0.00031 2
UNIPROTKB|Q86VL0 - symbol:TCEA2 "TCEA2 protein" species:9... 115 0.00034 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 115 0.00057 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 113 0.00060 1
ZFIN|ZDB-GENE-070705-486 - symbol:tceanc2 "transcription ... 111 0.00063 1
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 115 0.00065 1
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 116 0.00068 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 110 0.00069 2
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 114 0.00074 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 113 0.00078 1
>TAIR|locus:2156814 [details] [associations]
symbol:AT5G05140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009620 "response to fungus" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 GO:GO:0005634 EMBL:CP002688 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 EMBL:AB018111
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AY062787 EMBL:AY081599
IPI:IPI00527750 RefSeq:NP_196133.3 UniGene:At.21997
ProteinModelPortal:Q9FHK9 SMR:Q9FHK9 PRIDE:Q9FHK9
EnsemblPlants:AT5G05140.1 GeneID:830396 KEGG:ath:AT5G05140
TAIR:At5g05140 eggNOG:NOG250858 HOGENOM:HOG000241439
InParanoid:Q9FHK9 OMA:FDEMDED PhylomeDB:Q9FHK9
ProtClustDB:CLSN2918616 Genevestigator:Q9FHK9 Uniprot:Q9FHK9
Length = 436
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 237/456 (51%), Positives = 286/456 (62%)
Query: 3 MK-SGSLDNWRNYFRS-ANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRC 60
MK SGSLD+WR YFR + DIF IIDHA+MVAA DCP +FK RRD+IAE LF+C++ RC
Sbjct: 1 MKASGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRC 60
Query: 61 SGCDRVELAVPSGNEFDDDEEDCKRDGC----EFE-AGGSKESKVNSCRDDHVSNQIVSN 115
GCD +EL+VP +E + G ++E AGGSKESK NS R D+ NQIVSN
Sbjct: 61 VGCDHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDN--NQIVSN 118
Query: 116 FSSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLK 175
++ D AEAL+DEIEE S V EV RIKEIL N DE +SVL +SLR L+LM+L VD LK
Sbjct: 119 YTF-DEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILK 177
Query: 176 ATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAI--AEGTPDSVNPSVVD 233
+TEIGKAVNGLRKH S +IR LA+TLI WK+LVD+WVN TK I AEGTP+S NPSV+D
Sbjct: 178 STEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLD 237
Query: 234 EEEGLPSPPLDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQN 293
EEE PS P D + FT G E+S FFD +D GNPRNS E +RE R+P QN
Sbjct: 238 EEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRP----QN 292
Query: 294 IAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRXXXXXXXXXXXXXXXXRPLKQNMGQKVD 353
IAKRK P + +D +K A R + +
Sbjct: 293 IAKRK---PEGTQMRIQDAPFRSIKPSSAT---DFDGTRRPVKQSTEQRMKNETVSVHKS 346
Query: 354 NESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRT 413
+ +Q+K +K Q KLK D DA K E KRKLQESYQ ENAKKQRT
Sbjct: 347 EKPMIQRKPVVTEQKRKAPGPQQEKLKGLDADA---KFEFAKRKLQESYQHHENAKKQRT 403
Query: 414 IQVMELHDLPKQGLGNRNPQL-RPGNYNRHWANGRR 448
IQV+E+ +PKQG + PQL RPG NR+WANGR+
Sbjct: 404 IQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436
>TAIR|locus:2178173 [details] [associations]
symbol:AT5G09850 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AB016893 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AY058141 EMBL:AY093710 IPI:IPI00530321
RefSeq:NP_568218.1 UniGene:At.23236 ProteinModelPortal:F4KFC7
SMR:F4KFC7 PRIDE:F4KFC7 EnsemblPlants:AT5G09850.1 GeneID:830845
KEGG:ath:AT5G09850 TAIR:At5g09850 eggNOG:NOG237901
HOGENOM:HOG000243987 InParanoid:Q9FIC1 OMA:NIVERLY Uniprot:F4KFC7
Length = 353
Score = 257 (95.5 bits), Expect = 8.7e-34, Sum P(2) = 8.7e-34
Identities = 86/303 (28%), Positives = 140/303 (46%)
Query: 8 LDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLF-TCKLTRCSGCDRV 66
LD++R+ +A D++ ID A++VA+LD +E K RRD I E+L+ T +C CD
Sbjct: 3 LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 60
Query: 67 ELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGDIAEALT 126
GN + E E V + ++ V + V N D +
Sbjct: 61 --FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSV-NVEDDDDFDPFA 117
Query: 127 DEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGL 186
++E + ++ IKE L + D S+ L E L+ L+ M +T L+ T+IG+ VN +
Sbjct: 118 GLFDDEQK---SIVEIKEKLEDP-DLSEESLVELLQNLEDMDITFQALQETDIGRHVNRV 173
Query: 187 RKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDEL 246
RKH S +R LA+ L++ WK+ VDEWV + G D PS++ +E+ L
Sbjct: 174 RKHPSNNVRRLAKQLVKKWKETVDEWVKFNQP---G--DLEPPSLIADEDSPVQKALHNG 228
Query: 247 AFFTGPSAGIE-LSQFFDGMDDFGNPRNSGE-FIKNRESGRKPSVENQNIAKRKQQTPNE 304
+ P G + Q +G N E K R +P E+ + AK + +P++
Sbjct: 229 SRQQVPDFGYSPVPQ--NGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQ 286
Query: 305 PNV 307
+
Sbjct: 287 QTI 289
Score = 145 (56.1 bits), Expect = 8.7e-34, Sum P(2) = 8.7e-34
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 359 QQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVME 418
+++S A +P SQ + D++ +V + +++LQ++Y+ AENAKKQRTIQVM+
Sbjct: 270 RRESPSPAKPSRPSPSQQTIPR--DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMD 327
Query: 419 LHDLPKQGLGNRNPQLRPGNYN-RHW 443
+HD+PK G P+ + RHW
Sbjct: 328 IHDIPKPKKGGFFPRKGGSSQGGRHW 353
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 53/176 (30%), Positives = 89/176 (50%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGPSA 254
LA+ LI+ WK L+D TK E + +E+GL S P A
Sbjct: 65 VSLAKVLIKNWKRLLDS-PRTTKGEREAREKAKK-----KEKGLGSSGWK-------PEA 111
Query: 255 GIELSQFFDGMDDFGNPRNSGEFIKNRESG----RKPSVENQNIAKRKQQTPNEPN 306
G+ + +G G P+ + + +R S ++PS+E N ++ K +TP P+
Sbjct: 112 GLSPPRKKEG----GEPKTRRDSVDSRSSTTSSPKRPSLERSNSSRSKVETPKTPS 163
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 148 (57.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 55/174 (31%), Positives = 85/174 (48%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L SR +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGP-- 252
LA+ LI+ WK L+D TK E + +E+GL A + P
Sbjct: 65 VSLAKVLIKNWKRLLDS-PRTTKGEREEREKA------KKEKGLGCSDWKPEAGLSPPRK 117
Query: 253 SAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPN 306
G E D +D R+S S ++PS+E N +K K +TP P+
Sbjct: 118 KGGGEPKTRRDSVDS----RSS-----TTSSPKRPSLERSNSSKSKVETPTTPS 162
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 53/173 (30%), Positives = 87/173 (50%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R ++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKNTEGAL-DLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGPSA 254
LA+ LI+ WK L+D + +G +E+GL E + + P A
Sbjct: 65 VSLAKVLIKNWKRLLD-----SPGPPKGEKGEEREKAKKKEKGL------ECSDWK-PEA 112
Query: 255 GIELSQFFDGMDDFGNPRNSGEFIKNRESG-RKPSVENQNIAKRKQQTPNEPN 306
G LS +D R+S + + S ++PSVE N +K K ++P P+
Sbjct: 113 G--LSPPRKKREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPS 163
>UNIPROTKB|Q5DR83 [details] [associations]
symbol:TCEA3 "Rhabdomyosarcoma antigen MU-RMS-40.22"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AL357134 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL109936 UniGene:Hs.446354 HGNC:HGNC:11615
ChiTaRS:TCEA3 EMBL:AY540752 IPI:IPI01012612
ProteinModelPortal:Q5DR83 SMR:Q5DR83 STRING:Q5DR83
Ensembl:ENST00000374601 UCSC:uc010ody.1 ArrayExpress:Q5DR83
Bgee:Q5DR83 Uniprot:Q5DR83
Length = 154
Score = 124 (48.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R ++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKNTEGAL-DLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 48/172 (27%), Positives = 82/172 (47%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGPSA 254
LA+ LI WK L+D + A +G +E+GL + P
Sbjct: 65 VALAKVLIRNWKQLLD-----SPATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRK 119
Query: 255 GIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPN 306
+ + D D + ++ S ++PS+E N +K K +TP P+
Sbjct: 120 K-RVEEPKDRRDSVDSKSSA------TSSPKRPSMERSNSSKSKAETPRTPS 164
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 143 (55.4 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 48/172 (27%), Positives = 82/172 (47%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGPSA 254
LA+ LI WK L+D + A +G +E+GL + P
Sbjct: 65 VALAKVLIRNWKQLLD-----SPATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRK 119
Query: 255 GIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPN 306
+ + D D + ++ S ++PS+E N +K K +TP P+
Sbjct: 120 K-RVEEPKDRRDSVDSKSSA------TSSPKRPSMERSNSSKSKAETPRTPS 164
>UNIPROTKB|E2R638 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
Ensembl:ENSCAFT00000003983 Uniprot:E2R638
Length = 154
Score = 122 (48.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI L +R S+ L L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIARKLEKMVARKNSEGAL-GLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>UNIPROTKB|I3LP05 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000032136 OMA:PLMERSN Uniprot:I3LP05
Length = 124
Score = 103 (41.3 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 169 LTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
+++ L+ T IG AVNG+RKH S K++ LA+ LI WK L+D
Sbjct: 1 MSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLD 43
Score = 39 (18.8 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 343 PLKQNMGQKVDNESKLQQKSDKAAINKKP 371
P K+ M + D + KS + K+P
Sbjct: 80 PRKKRMEEPKDRRDSVDSKSSATSSPKRP 108
>UNIPROTKB|Q5JRI8 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL590548 EMBL:AL355803 UniGene:Hs.505004
UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00384330 SMR:Q5JRI8
STRING:Q5JRI8 Ensembl:ENST00000415602 UCSC:uc010gku.2
Uniprot:Q5JRI8
Length = 82
Score = 113 (44.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D + KA
Sbjct: 4 LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD--ASDAKAR 61
Query: 220 AEGTPDSVNPSVVDEEEGLPSP 241
G + S D E P P
Sbjct: 62 ERGRGMPLPTSSRDASEA-PDP 82
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/193 (24%), Positives = 92/193 (47%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQ-I 194
++LRI + L SR+ D L + LR L+ +T+ L+ T IG +VNG+RKH + + +
Sbjct: 6 DLLRIAKKLDKMVSRNNMDGAL-DLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDE-----LAFF 249
+LA+ LI+ WK L++ N + +PS SP D + FF
Sbjct: 65 VNLAKILIKNWKRLLESAQNPKSERPNEVKNGSHPSKPSGSPSRTSPEKDSRKDAPVDFF 124
Query: 250 TGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLA 309
PS +D ++S + + RKPS++ + +K + + ++L
Sbjct: 125 PPPSINSHPPLRRSSVDV--KRKDSTD--SKKPLPRKPSLDGRRDSKDSTDSKSSNHLLK 180
Query: 310 KDNNSLQMKRQEA 322
+ ++ +++R+++
Sbjct: 181 RQSSEPKLERRDS 193
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSK-QIR 195
E++RI + + + + V + L+ L+ + +T++ L++T IG +VN +RK + ++
Sbjct: 8 EIIRIAKKMDKMAQKKNGVGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVT 67
Query: 196 HLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSP 241
LA++LI+ WK L+DE A K E + P VV E P P
Sbjct: 68 SLAKSLIKSWKKLLDEPA-ADKNSEEKKKERTTP-VVSPSETSPEP 111
>UNIPROTKB|F6X6Y7 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 Ensembl:ENSCAFT00000003983
EMBL:AAEX03001757 Uniprot:F6X6Y7
Length = 268
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 54/176 (30%), Positives = 80/176 (45%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI L +R S+ L L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIARKLEKMVARKNSEGAL-GLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVD-----EEEGLPSPPLDELAFF 249
LA+ LI+ WK L+D E + +D E GL SPP + A
Sbjct: 65 VSLAKVLIKNWKRLLDSPGPPKGEKGEERDKAKKEKGLDCSNWKPETGL-SPPRKKRAE- 122
Query: 250 TGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEP 305
E + D +D ++S S ++PS+E N K K +TP P
Sbjct: 123 -------EPKERRDSVDS----KSSAT-----SSPKRPSMERSNSGKSKAETPKTP 162
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 126 (49.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 54/176 (30%), Positives = 80/176 (45%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI L +R S+ L L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIARKLEKMVARKNSEGAL-GLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVD-----EEEGLPSPPLDELAFF 249
LA+ LI+ WK L+D E + +D E GL SPP + A
Sbjct: 65 VSLAKVLIKNWKRLLDSPGPPKGEKGEERDKAKKEKGLDCSNWKPETGL-SPPRKKRAE- 122
Query: 250 TGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEP 305
E + D +D ++S S ++PS+E N K K +TP P
Sbjct: 123 -------EPKERRDSVDS----KSSAT-----SSPKRPSMERSNSGKSKAETPKTP 162
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 125 (49.1 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 33/104 (31%), Positives = 65/104 (62%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E++RI + L ++ +D + + L+ L+ M +T+D L++T IG +VN LRK S +++
Sbjct: 32 EIVRIAKRLDKMVAKKSADGAM-DLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEV 90
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVN-PSVVDEEEG 237
LA++LI+ WK L+D ++A++ +E +++ P+ +E G
Sbjct: 91 IALAKSLIKSWKKLLD--LDASEEKSEEKKKNLSLPTSSSKETG 132
>UNIPROTKB|A5PKE4 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003618 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:BC142457 IPI:IPI00868616 RefSeq:NP_001098462.1
UniGene:Bt.35742 ProteinModelPortal:A5PKE4 GeneID:539385
KEGG:bta:539385 CTD:127428 eggNOG:NOG309610 HOGENOM:HOG000008018
HOVERGEN:HBG058410 InParanoid:A5PKE4 OrthoDB:EOG44QT23
NextBio:20877958 Uniprot:A5PKE4
Length = 208
Score = 120 (47.3 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
G I + T E + V+ ++ R K +L D+S L E+LR L+ + + LK+T+
Sbjct: 22 GKIYKQATIESLKRVVVIEDIKRWKTMLELP-DQSKENLVEALRELKKKIPSREVLKSTK 80
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
IG VN +R+H ++ LAR + W+ +++ VN
Sbjct: 81 IGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHVN 116
>UNIPROTKB|F1MBR2 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9913
"Bos taurus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003618 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 IPI:IPI00868616 UniGene:Bt.35742
GeneTree:ENSGT00390000014384 OMA:REVYTEW EMBL:DAAA02008837
Ensembl:ENSBTAT00000012535 Uniprot:F1MBR2
Length = 208
Score = 120 (47.3 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 30/96 (31%), Positives = 52/96 (54%)
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
G I + T E + V+ ++ R K +L D+S L E+LR L+ + + LK+T+
Sbjct: 22 GKIYKQATIESLKRVVVIEDIKRWKTMLELP-DQSKENLVEALRELKKKIPSREVLKSTK 80
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
IG VN +R+H ++ LAR + W+ +++ VN
Sbjct: 81 IGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHVN 116
>UNIPROTKB|Q96MN5 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL353898 CTD:127428 eggNOG:NOG309610
HOVERGEN:HBG058410 OrthoDB:EOG44QT23 EMBL:AK056674 EMBL:AK096488
EMBL:BC035374 IPI:IPI00645722 IPI:IPI00845424 RefSeq:NP_694580.1
UniGene:Hs.558618 HSSP:P23881 ProteinModelPortal:Q96MN5 SMR:Q96MN5
PhosphoSite:Q96MN5 DMDM:74752040 PaxDb:Q96MN5 PRIDE:Q96MN5
DNASU:127428 Ensembl:ENST00000234827 Ensembl:ENST00000371331
GeneID:127428 KEGG:hsa:127428 UCSC:uc001cwt.1 GeneCards:GC01P054520
HGNC:HGNC:26494 HPA:HPA046918 neXtProt:NX_Q96MN5
PharmGKB:PA142672531 InParanoid:Q96MN5 PhylomeDB:Q96MN5
GenomeRNAi:127428 NextBio:82091 Bgee:Q96MN5 CleanEx:HS_C1orf83
Genevestigator:Q96MN5 Uniprot:Q96MN5
Length = 208
Score = 120 (47.3 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 104 RDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRR 163
R + N S G + + T E + VV ++ R K +L D++ L E+L+
Sbjct: 7 RTPRIQNSPQKKDSGGKVYKQATIESLKRVVVVEDIKRWKTMLELP-DQTKENLVEALQE 65
Query: 164 LQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
L+ + + LK+T IG VN +RKH ++ LAR + WK ++ N
Sbjct: 66 LKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSN 116
>UNIPROTKB|E5RIS7 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00975678
ProteinModelPortal:E5RIS7 SMR:E5RIS7 PRIDE:E5RIS7
Ensembl:ENST00000520534 ArrayExpress:E5RIS7 Bgee:E5RIS7
Uniprot:E5RIS7
Length = 111
Score = 104 (41.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+R + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>UNIPROTKB|I3LKH0 [details] [associations]
symbol:TCEANC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000014384 OMA:REVYTEW
EMBL:FP475975 RefSeq:XP_003356504.1 Ensembl:ENSSSCT00000029087
GeneID:100621219 KEGG:ssc:100621219 Uniprot:I3LKH0
Length = 208
Score = 118 (46.6 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
G I + T E + V+ ++ R K +L D++ L E LR L+ + + LK+T
Sbjct: 22 GKIYKQATIESLKRVVVIEDIKRWKTMLELP-DQTKENLVEVLRELKKKIPSREVLKSTR 80
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTP 224
IG VN +R+H ++ LAR + W+ ++E V+ + P
Sbjct: 81 IGHTVNKMRQHSDSEVACLAREVYTEWRTFIEEHVDRPSIVVRSDP 126
>UNIPROTKB|I3LRU2 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
OMA:WKVHCHR CTD:6924 EMBL:FP475977 RefSeq:XP_003356245.1
Ensembl:ENSSSCT00000027579 GeneID:100620801 KEGG:ssc:100620801
Uniprot:I3LRU2
Length = 805
Score = 114 (45.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 117 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 176
SSG+ A +T E + V E L+ + L + D L + L++L + +T+D L
Sbjct: 16 SSGEEAAPVTAMAAESALQVVEKLQAR--LAANPDPKK--LLKYLKKLSALPITIDILAE 71
Query: 177 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
T +GK VN LRKH + + AR L+ WK LV
Sbjct: 72 TGVGKTVNSLRKH--EHVGSFARDLVAQWKKLV 102
Score = 59 (25.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 361 KSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQL-AENAKKQRT-IQVME 418
K+ A+ +K L +K S + D+VQ + + KL++ A++AK ++ +V+
Sbjct: 452 KTSTTALGEKGLKKNDSKSTSKNSDSVQKLPKVNENKLEKLLPAGADSAKPKKVPSEVLP 511
Query: 419 -LHDLP 423
L DLP
Sbjct: 512 VLPDLP 517
>UNIPROTKB|F1P1E3 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
EMBL:AADN02043724 IPI:IPI00586665 Ensembl:ENSGALT00000034951
OMA:IVENIKH Uniprot:F1P1E3
Length = 779
Score = 116 (45.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 39/116 (33%), Positives = 55/116 (47%)
Query: 130 EEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKH 189
E +VVG R++ L S D L +SL+RL + +TVD L T +GK VN LRKH
Sbjct: 3 ESVLEVVG---RLQARLAGSADPKK--LLKSLKRLSELPITVDILVETGVGKTVNSLRKH 57
Query: 190 GSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDE 245
+ + A+ L+ WK LV A + + S + + PSP DE
Sbjct: 58 --ELVGDFAKNLVARWKKLVPVSQEADRNNLDSEDCDYERSGSRKRQA-PSPQEDE 110
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 264 GMDDFGNPRNSGE--FIKNRESGRK-PSVE--NQNIAKRKQ-QTPNEPNVLAKD 311
G D G+ + +G K+ S RK PS + N+N A++KQ +TP +PN + D
Sbjct: 440 GEKDQGHSKQNGSKASTKSSSSSRKSPSHKRTNENKAEKKQAETP-KPNRMLID 492
Score = 50 (22.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 14/60 (23%), Positives = 27/60 (45%)
Query: 263 DGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNN-SLQMKRQE 321
+ +D+ R K++ KPS+E N + KQ+ ++ + K+ S +K E
Sbjct: 322 ESVDNHTKKRKHQNSEKSKLGKSKPSLETSNTEREKQKAESDSSSRIKEKGTSGSLKTSE 381
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+ RI L +R ++ + + LR L+ M +T+ L++T +G +VN LRK S +++
Sbjct: 6 EIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEEL 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTP 224
LA++LI+ WK L+D ++ GTP
Sbjct: 65 IALAKSLIKSWKKLLDVSDGKSRNQGRGTP 94
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+ RI L +R ++ + + LR L+ M +T+ L++T +G +VN LRK S +++
Sbjct: 6 EIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEEL 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTP 224
LA++LI+ WK L+D ++ GTP
Sbjct: 65 IALAKSLIKSWKKLLDVSDGKSRDQGRGTP 94
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 30/90 (33%), Positives = 52/90 (57%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+ RI L +R ++ + + LR L+ M +T+ L++T +G +VN LRK S +++
Sbjct: 6 EIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEEL 64
Query: 195 RHLARTLIEGWKDLVDEWVNATKAIAEGTP 224
LA++LI+ WK L+D ++ GTP
Sbjct: 65 IALAKSLIKSWKKLLDVSDGKSRDQGRGTP 94
>UNIPROTKB|E5RJ93 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00974396
ProteinModelPortal:E5RJ93 SMR:E5RJ93 Ensembl:ENST00000518784
ArrayExpress:E5RJ93 Bgee:E5RJ93 Uniprot:E5RJ93
Length = 90
Score = 98 (39.6 bits), Expect = 0.00027, P = 0.00027
Identities = 21/74 (28%), Positives = 46/74 (62%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+R + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLV 209
LA++LI+ WK L+
Sbjct: 64 SLAKSLIKSWKKLL 77
>UNIPROTKB|G3N2S6 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR010684
InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711 PROSITE:PS51319
SMART:SM00509 GO:GO:0016021 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 OMA:WKVHCHR EMBL:DAAA02006428
Ensembl:ENSBTAT00000063789 Uniprot:G3N2S6
Length = 803
Score = 120 (47.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 117 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 176
SSG+ A +T E + V E L+ + L + D L + L++L + +TVD L
Sbjct: 16 SSGEEAAPVTAMAAESALQVVEKLQAR--LATNADPKK--LLKYLKKLSALPITVDILAE 71
Query: 177 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
T +GK VN LRKH + + + AR L+ WK LV
Sbjct: 72 TGVGKTVNSLRKH--EHVGNFARDLVAQWKKLV 102
Score = 49 (22.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 263 DGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNS 314
D D+F P S E + + RK + + I K TP E + D+ S
Sbjct: 419 DSDDEFEKPTMSFESYLSYDQPRK---KKKKIVKTSTTTPGEKGLKKNDSKS 467
Score = 40 (19.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 11/58 (18%), Positives = 26/58 (44%)
Query: 346 QNMGQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQ 403
++ + +D+ KL + ++ P+ + KLK D + V + +Q +Y+
Sbjct: 466 KSTSKNLDSVHKLPKVNENKPEKLPPVGADSAKLKKVPSDVLPVLPDLPLPVIQANYR 523
>UNIPROTKB|Q14241 [details] [associations]
symbol:TCEB3 "Transcription elongation factor B polypeptide
3" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001810
InterPro:IPR003617 InterPro:IPR010684 InterPro:IPR017923
Pfam:PF06881 Pfam:PF08711 PROSITE:PS50181 PROSITE:PS51319
SMART:SM00509 GO:GO:0016021 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0003677 EMBL:CH471134 GO:GO:0006357
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 GO:GO:0008023
Reactome:REACT_1892 HOGENOM:HOG000059565 HOVERGEN:HBG051467
KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG114994
OMA:WKVHCHR EMBL:AK313079 EMBL:DA333869 EMBL:AL031295 EMBL:L47345
EMBL:BC002883 EMBL:AF116729 IPI:IPI00941732 PIR:JC4636
RefSeq:NP_003189.2 UniGene:Hs.15535 PDB:4HFX PDBsum:4HFX
ProteinModelPortal:Q14241 SMR:Q14241 IntAct:Q14241
MINT:MINT-1462212 STRING:Q14241 PhosphoSite:Q14241 DMDM:294862430
PaxDb:Q14241 PeptideAtlas:Q14241 PRIDE:Q14241 DNASU:6924
Ensembl:ENST00000418390 GeneID:6924 KEGG:hsa:6924 UCSC:uc001bho.3
CTD:6924 GeneCards:GC01P024069 H-InvDB:HIX0000251 HGNC:HGNC:11620
HPA:HPA005910 MIM:600786 neXtProt:NX_Q14241 PharmGKB:PA36379
InParanoid:Q14241 OrthoDB:EOG495ZRB GenomeRNAi:6924 NextBio:27089
Bgee:Q14241 Genevestigator:Q14241 GermOnline:ENSG00000011007
Uniprot:Q14241
Length = 798
Score = 116 (45.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 36/99 (36%), Positives = 51/99 (51%)
Query: 117 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 176
SSG+ A +T E + V E L+ + L + D L + L++L + +TVD L
Sbjct: 16 SSGEEAAPVTAMAAESALQVVEKLQAR--LAANPDPKK--LLKYLKKLSTLPITVDILAE 71
Query: 177 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNA 215
T +GK VN LRKH + + AR L+ WK LV NA
Sbjct: 72 TGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNA 108
Score = 53 (23.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 361 KSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVME-L 419
K+ A+ K L +K + D+VQ KL + E A+ AK ++ V+ L
Sbjct: 451 KTSATALGDKGLKKNDSKSTGKNLDSVQ-KLPKVNKTKSEKPAGADLAKLRKVPDVLPVL 509
Query: 420 HDLPKQGL-GNRNP 432
DLP + N P
Sbjct: 510 PDLPLPAIQANYRP 523
>UNIPROTKB|Q86VL0 [details] [associations]
symbol:TCEA2 "TCEA2 protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 SMART:SM00509 GO:GO:0005634 GO:GO:0005813
EMBL:CH471077 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803 KO:K03145
CTD:6919 RefSeq:NP_003186.1 UniGene:Hs.505004 UniGene:Hs.736326
DNASU:6919 GeneID:6919 KEGG:hsa:6919 HGNC:HGNC:11614
GenomeRNAi:6919 NextBio:27067 IPI:IPI00384330 EMBL:BC050623
SMR:Q86VL0 MINT:MINT-1379539 STRING:Q86VL0 Ensembl:ENST00000395053
Uniprot:Q86VL0
Length = 242
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 138 EVLRIKEILHNS-RDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
E+ RI L +S + LR L+ M +T+ L++T +G +VN LRK S +++
Sbjct: 7 EIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVI 66
Query: 196 HLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSP 241
LA++LI+ WK L+D + KA G + S D E P P
Sbjct: 67 ALAKSLIKSWKKLLD--ASDAKARERGRGMPLPTSSRDASEA-PDP 109
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 115 (45.5 bits), Expect = 0.00057, P = 0.00057
Identities = 35/106 (33%), Positives = 54/106 (50%)
Query: 138 EVLRIKEILHNS-RDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
E+ RI L +S + LR L+ M +T+ L++T +G +VN LRK S +++
Sbjct: 7 EIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVI 66
Query: 196 HLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSP 241
LA++LI+ WK L+D + KA G + S D E P P
Sbjct: 67 ALAKSLIKSWKKLLD--ASDAKARERGRGMPLPTSSRDASEA-PDP 109
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 113 (44.8 bits), Expect = 0.00060, P = 0.00060
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D + KA
Sbjct: 4 LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD--ASDAKAR 61
Query: 220 AEGTPDSVNPSVVDEEEGLPSP 241
G + S D E P P
Sbjct: 62 ERGRGMPLPTSSRDASEA-PDP 82
>ZFIN|ZDB-GENE-070705-486 [details] [associations]
symbol:tceanc2 "transcription elongation factor A
(SII) N-terminal and central domain containing 2" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 PROSITE:PS51321 ZFIN:ZDB-GENE-070705-486
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:CR450845 CTD:127428
eggNOG:NOG309610 HOGENOM:HOG000008018 HOVERGEN:HBG058410
OrthoDB:EOG44QT23 IPI:IPI00805701 RefSeq:XP_696087.1
UniGene:Dr.86550 ProteinModelPortal:B0UYI1
Ensembl:ENSDART00000091497 GeneID:567698 KEGG:dre:567698
GeneTree:ENSGT00390000014384 OMA:REVYTEW NextBio:20888801
Bgee:B0UYI1 Uniprot:B0UYI1
Length = 210
Score = 111 (44.1 bits), Expect = 0.00063, P = 0.00063
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 135 VVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSK-Q 193
V+ ++ R K IL ++++ E+L+ L + + LK+T IG VN LRKH +
Sbjct: 37 VIEDIERYKSILELPGQPKENMI-EALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPE 95
Query: 194 IRHLARTLIEGWKDLVDEWVN 214
I+ LA+ + + W+ ++E N
Sbjct: 96 IKSLAKEVYKHWRTFIEEHAN 116
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 138 EVLRIKEILHNS-RD-ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIR 195
E+++ +E L + +D E D L E L+ + +T D LK+T+IGK+V LR H I
Sbjct: 3 EIIKCREQLEKAIKDGEFDKAL-ECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGIS 61
Query: 196 HLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPL 243
++ LI+ WK + E +AT + + S S + PS L
Sbjct: 62 SQSKELIDKWKQDI-EGTSATTTSSSSSSSSSTTSTTTTKTASPSESL 108
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 155 SVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV-DEWV 213
S ++L++L+ +T DTL AT++GK + L KH + I+ +A L+E WK +V +E
Sbjct: 32 SQCIDALKQLKKFPVTYDTLVATQVGKKLRSLAKHPVEDIKSVATDLLEIWKKVVIEETA 91
Query: 214 NATKAIAEGTPDSVNPSVVDEEEGLPSPP 242
A K EGT V + PS P
Sbjct: 92 KAKKT--EGTNGCKEAKVNKMDVEKPSNP 118
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 110 (43.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN LRK + +++
Sbjct: 4 EVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
Score = 44 (20.5 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 6/33 (18%), Positives = 21/33 (63%)
Query: 282 ESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNS 314
E ++P++ +QN + ++++ + NV ++ + +
Sbjct: 88 EKKKEPAISSQNSPEAREESSSSSNVSSRKDET 120
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 23/71 (32%), Positives = 50/71 (70%)
Query: 141 RIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLAR 199
++ +++H + +D + + L+ L+ M ++++TL++T IG +VN +RK S ++++ LA+
Sbjct: 13 KLDKMVH--KKNTDGAI-DLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAK 69
Query: 200 TLIEGWKDLVD 210
+LI+ WK L+D
Sbjct: 70 SLIKAWKKLLD 80
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D ++
Sbjct: 4 LRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQ 63
Query: 220 AEGTP 224
GTP
Sbjct: 64 GRGTP 68
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.130 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 448 432 0.00086 118 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 604 (64 KB)
Total size of DFA: 262 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.93u 0.17s 49.10t Elapsed: 00:00:02
Total cpu time: 48.94u 0.17s 49.11t Elapsed: 00:00:02
Start: Thu May 9 23:18:44 2013 End: Thu May 9 23:18:46 2013