BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013167
(448 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 248/462 (53%), Positives = 302/462 (65%), Gaps = 47/462 (10%)
Query: 5 SGSLDNWRNYFRS-ANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGC 63
SGSLD+WR YFR + DIF IIDHA+MVAA DCP +FK RRD+IAE LF+C++ RC GC
Sbjct: 4 SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63
Query: 64 DRVELAVPSGNEFDDDEEDCKRDGCEFE-----AGGSKESKVNSCRDDHVSNQIVSNFSS 118
D +EL+VP +E + G + AGGSKESK NS R D+ NQIVSN++
Sbjct: 64 DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDN--NQIVSNYTF 121
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
D AEAL+DEIEE S V EV RIKEIL N DE +SVL +SLR L+LM+L VD LK+TE
Sbjct: 122 -DEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTE 180
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAI--AEGTPDSVNPSVVDEEE 236
IGKAVNGLRKH S +IR LA+TLI WK+LVD+WVN TK I AEGTP+S NPSV+DEEE
Sbjct: 181 IGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEE 240
Query: 237 GLPSPPLDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAK 296
PS P D + FT G E+S FFD +D GNPRNS E +RE R+P QNIAK
Sbjct: 241 AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRP----QNIAK 295
Query: 297 RKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNES 356
RK + QM+ Q+A R KPS+ ++ G RP+KQ+ Q++ NE+
Sbjct: 296 RKPE-------------GTQMRIQDAPFRSIKPSS--ATDFDGTRRPVKQSTEQRMKNET 340
Query: 357 KLQQKSDKAAINKKPLNS---------QHNKLKSSDEDAVQVKLEATKRKLQESYQLAEN 407
KS+K I +KP+ + Q KLK D DA K E KRKLQESYQ EN
Sbjct: 341 VSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLDADA---KFEFAKRKLQESYQHHEN 397
Query: 408 AKKQRTIQVMELHDLPKQGLGNRNPQL-RPGNYNRHWANGRR 448
AKKQRTIQV+E+ +PKQG + PQL RPG NR+WANGR+
Sbjct: 398 AKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 200/449 (44%), Positives = 256/449 (57%), Gaps = 60/449 (13%)
Query: 5 SGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGCD 64
S SLD WR YFR + DIF IIDHA+MVAA D PKEFK R DRIAE LF+CK++RC GCD
Sbjct: 7 SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66
Query: 65 RVELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGDIAEA 124
+EL++ +G+E V V +
Sbjct: 67 HLELSI-AGDE------------------------------AAVEIVGVGGGGDRGDSGV 95
Query: 125 LTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVN 184
T E EE S V EV+RI++IL N DE DSVL ESLR+L+ M+++VD LK TEIGKAVN
Sbjct: 96 ATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVN 155
Query: 185 GLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIA--EGTPDSVNPSVVDEEEGLPSPP 242
GLR+H S +I LA+TL WK LVD+W+N + +A EGTP+S+N SV+DEEE PSPP
Sbjct: 156 GLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEEAFPSPP 215
Query: 243 LDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTP 302
D L + G ELSQ D +D GNPR+S E R+S Q+ A R+ +
Sbjct: 216 HD-LDIYAPEPNGFELSQILDCLDCDGNPRHSVESKHERKS--------QSSAGRRPKGT 266
Query: 303 NEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQKS 362
N+ NV+ + N Q +R+EA VRP K S ++ P R KQ+ Q V S +Q+K
Sbjct: 267 NDANVVGRYCNDQQTRREEADVRPMKHS---ATDVVEPKRQTKQSREQMV---SAIQRKP 320
Query: 363 DKAAINKKPL-NSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHD 421
K+ L Q +KLK+ D D+ K E KRKLQESY ENAK+QRTIQV+E
Sbjct: 321 TAVTEQKRKLAGPQQDKLKALDPDS---KFEFAKRKLQESYHQHENAKRQRTIQVLE--T 375
Query: 422 LPKQGLGNRNPQL-RPGN----YNRHWAN 445
+PKQ + PQL RP Y W++
Sbjct: 376 IPKQN-KVQKPQLKRPATRRYIYWYFWSS 403
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 190/458 (41%), Gaps = 129/458 (28%)
Query: 8 LDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLT-RCSGCDRV 66
LD++R+ +A D++ ID A++VA+LD +E K RRD I E+L+ + +C CD
Sbjct: 3 LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 60
Query: 67 ELAVPSGNEFDDDEEDCKRDGCEFEAGGS-KESKVNSCRDDHVSNQIVSNFSSGDIAEAL 125
F GG+ E+ + + V + G + A
Sbjct: 61 -----------------------FGGGGNVTEAAIGRVNNGRVHEETEEEDEEG-VTAAA 96
Query: 126 TDEIEEESQVVGE-----------------VLRIKEILHNSRDESDSVLFESLRRLQLMA 168
+E+ E+S V + ++ IKE L + D S+ L E L+ L+ M
Sbjct: 97 EEEVREKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLEDP-DLSEESLVELLQNLEDMD 155
Query: 169 LTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVN 228
+T L+ T+IG+ VN +RKH S +R LA+ L++ WK+ VDEWV + P +
Sbjct: 156 ITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFNQ------PGDLE 209
Query: 229 PSVVDEEEGLPSPPLDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPS 288
P + +E P + A G + DFG + ++G S
Sbjct: 210 PPSLIADEDSPV----QKALHNGSRQQVP---------DFG-------YSPVPQNGYSSS 249
Query: 289 VENQNIAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNM 348
+N NI EP E RP P +P + P +P + +
Sbjct: 250 SKNSNIT--------EP---------------ERKPRPVAP--QPRRESPSPAKPSRPSP 284
Query: 349 GQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENA 408
Q+ P + +H K D D + +L Q++Y+ AENA
Sbjct: 285 SQQT-----------------IPRDKEH---KEVDFDTARKRL-------QQNYRQAENA 317
Query: 409 KKQRTIQVMELHDLPKQGLGNRNPQLRPGNYN---RHW 443
KKQRTIQVM++HD+PK G P R G + RHW
Sbjct: 318 KKQRTIQVMDIHDIPKPKKGGFFP--RKGGSSQGGRHW 353
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L SR +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R ++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKNTEGAL-DLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI+ WK L+D
Sbjct: 65 VSLAKVLIKNWKRLLD 80
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 138 EVLRIKEILHN--SRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQI 194
E+LRI + L +R +++ L + L++L +++ L+ T IG AVNG+RKH S K++
Sbjct: 6 ELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEV 64
Query: 195 RHLARTLIEGWKDLVD 210
LA+ LI WK L+D
Sbjct: 65 VALAKVLIRNWKQLLD 80
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D
Sbjct: 31 LRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD 81
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D ++
Sbjct: 30 LRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRNQ 89
Query: 220 AEGTP 224
GTP
Sbjct: 90 GRGTP 94
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVDEWVNATKAI 219
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D ++
Sbjct: 30 LRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQ 89
Query: 220 AEGTP 224
GTP
Sbjct: 90 GRGTP 94
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
LR L+ M +T+ L++T +G +VN LRK S +++ LA++LI+ WK L+D
Sbjct: 31 LRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLD 81
>sp|A5PKE4|TEAN2_BOVIN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Bos taurus GN=TCEANC2
PE=2 SV=1
Length = 208
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 119 GDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATE 178
G I + T E + V+ ++ R K +L D+S L E+LR L+ + + LK+T+
Sbjct: 22 GKIYKQATIESLKRVVVIEDIKRWKTMLELP-DQSKENLVEALRELKKKIPSREVLKSTK 80
Query: 179 IGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
IG VN +R+H ++ LAR + W+ +++ VN
Sbjct: 81 IGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHVN 116
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN LRK + +++
Sbjct: 4 EVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 138 EVLRIKEILHNSRDESDSV-LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIR 195
EV+RI + + + ++ + L+ L+ + +T++ L++T IG +VN +RK + +++
Sbjct: 4 EVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVT 63
Query: 196 HLARTLIEGWKDLVD 210
LA++LI+ WK L+D
Sbjct: 64 SLAKSLIKSWKKLLD 78
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 161 LRRLQLMALTVDTLKATEIGKAVNGLRKHGS-KQIRHLARTLIEGWKDLVD 210
L+ L+ + +T++ L++T IG +VN +RK + +++ LA++LI+ WK L+D
Sbjct: 28 LKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 78
>sp|Q96MN5|TEAN2_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Homo sapiens GN=TCEANC2
PE=1 SV=1
Length = 208
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 117 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 176
S G + + T E + VV ++ R K +L D++ L E+L+ L+ + + LK+
Sbjct: 20 SGGKVYKQATIESLKRVVVVEDIKRWKTMLELP-DQTKENLVEALQELKKKIPSREVLKS 78
Query: 177 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214
T IG VN +RKH ++ LAR + WK ++ N
Sbjct: 79 TRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSN 116
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 OS=Rattus
norvegicus GN=Tceb3 PE=1 SV=1
Length = 773
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 169 LTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
+TVD L T +GK VN RKH +Q+ + AR L+ WK LV
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 169 LTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNA 215
+TVD L T +GK VN LRKH + + AR L+ WK LV NA
Sbjct: 64 ITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNA 108
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 OS=Mus musculus
GN=Tceb3 PE=1 SV=3
Length = 773
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 169 LTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
+TVD L T +GK VN RKH +Q+ + AR L+ WK LV
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|B0UYI1|TEAN2_DANRE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Danio rerio GN=tceanc2
PE=3 SV=1
Length = 210
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 157 LFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSK-QIRHLARTLIEGWKDLVDEWVN 214
+ E+L+ L + + LK+T IG VN LRKH +I+ LA+ + + W+ ++E N
Sbjct: 58 MIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVYKHWRTFIEEHAN 116
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 138 EVLRIKEILHNS-RDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRH 196
E+++ +E L + +D E L+ + +T D LK+T+IGK+V LR H I
Sbjct: 3 EIIKCREQLEKAIKDGEFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISS 62
Query: 197 LARTLIEGWK 206
++ LI+ WK
Sbjct: 63 QSKELIDKWK 72
>sp|Q8R2M0|TEAN2_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Mus musculus GN=Tceanc2
PE=2 SV=2
Length = 207
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 135 VVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQI 194
V+ ++ R K +L D++ L +L+ L+ + + L++T IG AVN +R+H ++
Sbjct: 37 VIEDIKRWKTMLELP-DQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEV 95
Query: 195 RHLARTLIEGWKDLVDE 211
LA+ + WK +++
Sbjct: 96 AGLAKEVYTEWKTFIEK 112
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 152 ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLV 209
E + L + +L + + + L+ T IGK VN LRK S ++ A+TL+ WK +V
Sbjct: 23 EDEQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRK-ISGEVGVAAKTLVTKWKAMV 79
>sp|Q5XIC7|TEAN2_RAT Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Rattus norvegicus
GN=Tceanc2 PE=2 SV=1
Length = 207
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 172 DTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVD 210
+ L++T IG AVN +R+H ++ LA+ + WK ++
Sbjct: 73 EVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYTEWKTFIE 111
>sp|Q8TB03|CX038_HUMAN Uncharacterized protein CXorf38 OS=Homo sapiens GN=CXorf38 PE=1
SV=1
Length = 319
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 65 RVELAVPSGNEFDDDEEDCKRDGCEFEAGGS-KESKVNSCRDDHVSNQIVSNFSSGDIAE 123
R+E + S EED +RDGCE E G ES+VN + ++ + + E
Sbjct: 204 RIEQLLTSDWAVHIPEED-QRDGCECEMGTYLSESQVNEIEMQLLKEKLQEIYLQAEEQE 262
Query: 124 ALTDEIEEESQVVGEVLRIKEILHNSRDE 152
L +E+ +VV E LR E L N E
Sbjct: 263 VLPEELSNRLEVVKEFLRNNEDLRNGLTE 291
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 156 VLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQ-IRHLARTLIEGWKDLVDEWVN 214
+ E + L+ +T + L+ T +GK +N +RK S + + A+ L+ W+ L+ E V
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRNWQKLI-EPVT 88
Query: 215 ATKAIAEGTPD 225
+ + G P+
Sbjct: 89 QNEQLVRGIPN 99
>sp|P47138|DPH4_YEAST Diphthamide biosynthesis protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=JJJ3 PE=1 SV=1
Length = 172
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 364 KAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLP 423
K A + LN+ +KL S D V T K+Q++Y++ N K +R + L +
Sbjct: 25 KKAYRNRLLNTHPDKLSKSIHDTVS---NVTINKIQDAYKILSNIKTRREYDRLILENYK 81
Query: 424 KQGLGN 429
+QG N
Sbjct: 82 RQGFHN 87
>sp|B1AJZ9|FHAD1_HUMAN Forkhead-associated domain-containing protein 1 OS=Homo sapiens
GN=FHAD1 PE=2 SV=2
Length = 1412
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 212 WVNATK----AIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTG 251
W NA K ++AEG P +V P+ + EE L DE+ G
Sbjct: 191 WTNAMKLSEKSVAEGIPGAVPPAEIYVEEDLAQQDKDEIILLLG 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,345,339
Number of Sequences: 539616
Number of extensions: 7463817
Number of successful extensions: 23325
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 22710
Number of HSP's gapped (non-prelim): 891
length of query: 448
length of database: 191,569,459
effective HSP length: 121
effective length of query: 327
effective length of database: 126,275,923
effective search space: 41292226821
effective search space used: 41292226821
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)