Query 013167
Match_columns 448
No_of_seqs 183 out of 443
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjt_A Transcription elongatio 99.7 3.1E-19 1.1E-23 152.6 2.3 79 136-214 11-91 (103)
2 1pqv_S STP-alpha, transcriptio 99.6 4.3E-15 1.5E-19 147.7 8.4 79 136-215 3-82 (309)
3 2xpp_A IWS1, ECU08_0440; trans 97.7 5.2E-05 1.8E-09 68.4 6.4 70 141-210 65-139 (145)
4 3nfq_A Transcription factor IW 97.4 0.00014 4.8E-09 67.2 5.8 68 142-209 81-153 (170)
5 2b4j_C PC4 and SFRS1 interacti 93.3 0.22 7.4E-06 42.3 7.2 59 152-210 24-84 (98)
6 1z9e_A PC4 and SFRS1 interacti 92.3 0.26 8.9E-06 43.6 6.5 59 152-210 24-84 (127)
7 2q2f_A Selenoprotein S; anti-p 44.8 7.5 0.00026 32.3 1.3 32 385-416 43-85 (89)
8 1ich_A TNF-1, tumor necrosis f 19.2 66 0.0022 27.6 2.8 39 7-53 24-62 (112)
9 1nwd_B GAD, glutamate decarbox 17.8 72 0.0025 20.8 2.0 14 198-211 11-24 (28)
10 1j2m_A CPI-17, 17-kDa PKC-pote 16.1 1.3E+02 0.0043 25.5 3.7 31 137-167 67-97 (99)
No 1
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.74 E-value=3.1e-19 Score=152.58 Aligned_cols=79 Identities=34% Similarity=0.551 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhcCC-CChHHHHHHHHHHhcCcCCHHHHhccCccccccccccC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 013167 136 VGEVLRIKEILHNSRD-ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKH-GSKQIRHLARTLIEGWKDLVDEWV 213 (448)
Q Consensus 136 ~eEV~rIK~~Le~~~d-~se~~llelLr~L~~l~iT~dlLksT~IGkaVnkLRKH-~s~eI~~LAk~LIkkWK~lV~e~~ 213 (448)
++||.+|.+.|+++.+ .+.+.++++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||++||++|.++.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~ 90 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPR 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999998643 56678999999999999999999999999999999999 778999999999999999998643
Q ss_pred h
Q 013167 214 N 214 (448)
Q Consensus 214 ~ 214 (448)
.
T Consensus 91 ~ 91 (103)
T 1wjt_A 91 T 91 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.56 E-value=4.3e-15 Score=147.69 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHH-hcCcCCHHHHhccCccccccccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 013167 136 VGEVLRIKEILHNSRDESDSVLFESLRRL-QLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVN 214 (448)
Q Consensus 136 ~eEV~rIK~~Le~~~d~se~~llelLr~L-~~l~iT~dlLksT~IGkaVnkLRKH~s~eI~~LAk~LIkkWK~lV~e~~~ 214 (448)
++||++|++.|++ ...+.+.++++|++| +.++||+++|++|+||++||+||||.+++|+.+|+.||++||++|..+..
T Consensus 3 ~~el~~~~~~L~k-~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~~v~~~~~ 81 (309)
T 1pqv_S 3 SKEVLVHVKNLEK-NKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKNKR 81 (309)
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4799999999998 346788999999999 99999999999999999999999999999999999999999999987754
Q ss_pred h
Q 013167 215 A 215 (448)
Q Consensus 215 ~ 215 (448)
.
T Consensus 82 ~ 82 (309)
T 1pqv_S 82 S 82 (309)
T ss_pred C
Confidence 4
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.69 E-value=5.2e-05 Score=68.38 Aligned_cols=70 Identities=23% Similarity=0.285 Sum_probs=56.7
Q ss_pred HHHHHHhhcCC---CChHHHHHHHHHHhcCcCCHHHHhccCccccccccccCCCH--HHHHHHHHHHHHHHHHHH
Q 013167 141 RIKEILHNSRD---ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSK--QIRHLARTLIEGWKDLVD 210 (448)
Q Consensus 141 rIK~~Le~~~d---~se~~llelLr~L~~l~iT~dlLksT~IGkaVnkLRKH~s~--eI~~LAk~LIkkWK~lV~ 210 (448)
.|+.=|+-.+| ....---.+|+-|..|||+.+.|+.++||++|..|.||+.+ +++++|+.||.+|...+-
T Consensus 65 ~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~ 139 (145)
T 2xpp_A 65 EIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139 (145)
T ss_dssp HHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHh
Confidence 34455655555 33334466899999999999999999999999999999764 999999999999997763
No 4
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.44 E-value=0.00014 Score=67.17 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHHhhcCC---CChHHHHHHHHHHhcCcCCHHHHhccCccccccccccCCC--HHHHHHHHHHHHHHHHHH
Q 013167 142 IKEILHNSRD---ESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGS--KQIRHLARTLIEGWKDLV 209 (448)
Q Consensus 142 IK~~Le~~~d---~se~~llelLr~L~~l~iT~dlLksT~IGkaVnkLRKH~s--~eI~~LAk~LIkkWK~lV 209 (448)
|+.=|+-.++ ....---.+|+-|..|||+.+.|+.++||++|.-|.||+. .+++.+|..||.+|...+
T Consensus 81 l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI 153 (170)
T 3nfq_A 81 VRIWLEPLPDGSLPSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPI 153 (170)
T ss_dssp HHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHH
Confidence 4445655555 2333346688889999999999999999999999999975 489999999999996554
No 5
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=93.34 E-value=0.22 Score=42.26 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHhcCcCCHHHHh-ccCccccccccccC-CCHHHHHHHHHHHHHHHHHHH
Q 013167 152 ESDSVLFESLRRLQLMALTVDTLK-ATEIGKAVNGLRKH-GSKQIRHLARTLIEGWKDLVD 210 (448)
Q Consensus 152 ~se~~llelLr~L~~l~iT~dlLk-sT~IGkaVnkLRKH-~s~eI~~LAk~LIkkWK~lV~ 210 (448)
.+...++++|..|..|++|.-+|+ .+.+=-++.+||+. .+..|++.|..|+.+.|.++.
T Consensus 24 ~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~kfK~~f~ 84 (98)
T 2b4j_C 24 LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (98)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999665 66788899999877 467999999999999999985
No 6
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=92.34 E-value=0.26 Score=43.58 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhcCcCCHHHHh-ccCccccccccccC-CCHHHHHHHHHHHHHHHHHHH
Q 013167 152 ESDSVLFESLRRLQLMALTVDTLK-ATEIGKAVNGLRKH-GSKQIRHLARTLIEGWKDLVD 210 (448)
Q Consensus 152 ~se~~llelLr~L~~l~iT~dlLk-sT~IGkaVnkLRKH-~s~eI~~LAk~LIkkWK~lV~ 210 (448)
.+...++++|..|..|++|.-+|+ -+.|--++.+||+. .+..|++.|..|+.+.|.++.
T Consensus 24 ~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~ 84 (127)
T 1z9e_A 24 LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999665 66788899999877 467999999999999999995
No 7
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=44.76 E-value=7.5 Score=32.29 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHHHHH-----------HHHHHhhhcceeEE
Q 013167 385 DAVQVKLEATKRKLQESY-----------QLAENAKKQRTIQV 416 (448)
Q Consensus 385 ~~~~~kleaaKRkLqe~Y-----------qeaenaKkqRtIQv 416 (448)
+.-+..|++|++|+||.| ++.|..|+|..|.+
T Consensus 43 v~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeKR~qkIe~ 85 (89)
T 2q2f_A 43 VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668999999999986 35566777766654
No 8
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=19.24 E-value=66 Score=27.60 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=26.9
Q ss_pred ChhhHHHHHhhcCCchHHHHHHHHHHHhcCCchHHHHhhhhHHHHHh
Q 013167 7 SLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLF 53 (448)
Q Consensus 7 ~ld~WR~~fr~ag~di~~~Id~AI~VAA~D~P~elr~RRD~IaErLf 53 (448)
...+|+.|+|.+|.. |+-|..+-.|+|..+ |+...|.|-
T Consensus 24 ~~~~WK~~aRkLGLs-----e~~Id~Ie~~~~r~l---~Eq~yqmLr 62 (112)
T 1ich_A 24 PPLRWKEFVKRLGLS-----DHEIDRLELQNGRCL---REAQYSMLA 62 (112)
T ss_dssp CSTTHHHHHHHHTCC-----HHHHHHHHHHCCSCH---HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-----HHHHHHHHHHCcCCh---HHHHHHHHH
Confidence 357899999999864 677777778888332 344555544
No 9
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=17.77 E-value=72 Score=20.85 Aligned_cols=14 Identities=36% Similarity=0.817 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q 013167 198 ARTLIEGWKDLVDE 211 (448)
Q Consensus 198 Ak~LIkkWK~lV~e 211 (448)
--.+|..||+.|++
T Consensus 11 qlemitawkkfvee 24 (28)
T 1nwd_B 11 QLEMITAWKKFVEE 24 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34789999999975
No 10
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=16.12 E-value=1.3e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHhcC
Q 013167 137 GEVLRIKEILHNSRDESDSVLFESLRRLQLM 167 (448)
Q Consensus 137 eEV~rIK~~Le~~~d~se~~llelLr~L~~l 167 (448)
+-..+|+..|.......++-|-++|.+|+.|
T Consensus 67 eR~~~LqelL~~C~~ptE~FI~eLL~rlkgl 97 (99)
T 1j2m_A 67 ERSRKIQGLLKSCTNPTENFVQELLVKLRGL 97 (99)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4677888889877667888999999999865
Done!